Query 045124
Match_columns 390
No_of_seqs 147 out of 1592
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 17:41:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.8 1.8E-20 6E-25 188.7 1.4 321 1-381 1-387 (592)
2 2p1m_B Transport inhibitor res 99.8 9.4E-20 3.2E-24 183.4 1.1 195 5-223 2-218 (594)
3 2ast_B S-phase kinase-associat 99.7 1.1E-20 3.9E-25 176.7 -10.0 241 4-278 4-257 (336)
4 4fcg_A Uncharacterized protein 98.9 1.2E-09 4E-14 101.5 7.6 153 108-277 75-238 (328)
5 3ogk_B Coronatine-insensitive 98.8 2.1E-09 7.2E-14 107.7 4.1 264 88-381 114-412 (592)
6 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 3.5E-09 1.2E-13 70.0 3.5 41 4-44 4-44 (53)
7 4fcg_A Uncharacterized protein 98.8 2.3E-09 7.8E-14 99.6 3.1 208 75-318 70-289 (328)
8 2z80_A TOLL-like receptor 2, v 98.7 3E-08 1E-12 92.8 10.2 228 114-380 52-285 (353)
9 2ast_B S-phase kinase-associat 98.7 1.5E-09 5.1E-14 100.8 -1.1 182 108-317 64-258 (336)
10 2z81_A CD282 antigen, TOLL-lik 98.6 8.2E-08 2.8E-12 95.2 10.0 230 114-380 26-259 (549)
11 2ca6_A RAN GTPase-activating p 98.6 1.5E-09 5.1E-14 103.0 -2.9 40 164-203 92-133 (386)
12 2p1m_B Transport inhibitor res 98.6 2.6E-08 8.8E-13 99.8 5.6 110 87-202 106-221 (594)
13 4fmz_A Internalin; leucine ric 98.6 2.8E-08 9.7E-13 92.6 4.8 57 302-380 217-273 (347)
14 3zyi_A Leucine-rich repeat-con 98.6 5E-08 1.7E-12 94.5 6.7 17 302-318 262-278 (452)
15 1h6u_A Internalin H; cell adhe 98.6 2.4E-08 8.3E-13 91.7 4.0 167 114-319 63-230 (308)
16 2o6q_A Variable lymphocyte rec 98.6 2.8E-08 9.6E-13 89.4 4.3 178 114-319 37-218 (270)
17 1h6u_A Internalin H; cell adhe 98.5 4.1E-08 1.4E-12 90.1 4.7 166 114-318 41-207 (308)
18 1o6v_A Internalin A; bacterial 98.5 7.8E-08 2.7E-12 93.5 6.8 75 114-200 90-164 (466)
19 3zyj_A Leucine-rich repeat-con 98.5 1E-07 3.5E-12 92.0 7.5 152 139-318 109-267 (440)
20 1ozn_A Reticulon 4 receptor; N 98.5 1.9E-08 6.5E-13 91.2 2.2 66 137-204 75-141 (285)
21 2id5_A Lingo-1, leucine rich r 98.5 4.4E-08 1.5E-12 95.5 4.7 66 137-204 51-116 (477)
22 3rfs_A Internalin B, repeat mo 98.5 2.9E-08 9.8E-13 89.5 2.2 174 114-318 41-217 (272)
23 1h6t_A Internalin B; cell adhe 98.5 4.8E-08 1.7E-12 88.9 3.1 166 114-318 46-212 (291)
24 1ozn_A Reticulon 4 receptor; N 98.5 2.3E-08 7.7E-13 90.7 0.7 177 114-318 32-213 (285)
25 3o6n_A APL1; leucine-rich repe 98.5 3E-07 1E-11 87.1 8.5 64 138-203 89-152 (390)
26 1o6v_A Internalin A; bacterial 98.5 9.9E-08 3.4E-12 92.8 5.1 187 138-380 86-273 (466)
27 3o6n_A APL1; leucine-rich repe 98.4 4E-08 1.4E-12 93.3 1.4 152 113-278 44-196 (390)
28 1xeu_A Internalin C; cellular 98.4 8.5E-08 2.9E-12 85.9 3.4 146 139-318 38-184 (263)
29 1m9s_A Internalin B; cell inva 98.4 3.8E-08 1.3E-12 98.7 1.1 123 138-277 61-184 (605)
30 4fmz_A Internalin; leucine ric 98.4 3.7E-08 1.3E-12 91.8 0.8 169 113-318 154-323 (347)
31 4ezg_A Putative uncharacterize 98.4 5.9E-08 2E-12 82.9 1.8 63 138-204 62-124 (197)
32 1ogq_A PGIP-2, polygalacturona 98.4 4.3E-08 1.5E-12 90.2 1.1 149 114-278 76-231 (313)
33 1xku_A Decorin; proteoglycan, 98.4 6.8E-08 2.3E-12 89.5 2.1 82 114-204 76-157 (330)
34 3zyj_A Leucine-rich repeat-con 98.4 9.6E-08 3.3E-12 92.2 3.2 176 114-318 112-291 (440)
35 2z62_A TOLL-like receptor 4, v 98.4 1.1E-07 3.7E-12 85.7 2.6 131 114-258 28-160 (276)
36 1ogq_A PGIP-2, polygalacturona 98.4 4.9E-08 1.7E-12 89.9 0.3 152 114-278 50-207 (313)
37 3zyi_A Leucine-rich repeat-con 98.4 1.3E-07 4.5E-12 91.6 3.3 145 114-276 99-250 (452)
38 1h6t_A Internalin B; cell adhe 98.4 1.4E-07 4.7E-12 85.9 3.2 146 140-318 44-190 (291)
39 2z7x_B TOLL-like receptor 1, v 98.4 7.8E-07 2.7E-11 87.6 8.8 242 86-372 220-498 (520)
40 3t6q_A CD180 antigen; protein- 98.4 1.8E-07 6.2E-12 93.9 4.3 233 114-373 325-578 (606)
41 3oja_B Anopheles plasmodium-re 98.4 7E-07 2.4E-11 89.6 8.3 65 137-203 94-158 (597)
42 2id5_A Lingo-1, leucine rich r 98.3 3E-07 1E-11 89.6 4.9 132 137-277 123-257 (477)
43 2ft3_A Biglycan; proteoglycan, 98.3 9.9E-08 3.4E-12 88.4 1.2 82 114-204 78-159 (332)
44 3o53_A Protein LRIM1, AGAP0063 98.3 7.6E-08 2.6E-12 88.7 -0.0 77 114-204 34-111 (317)
45 3m19_A Variable lymphocyte rec 98.3 1.1E-07 3.8E-12 84.5 1.0 126 142-276 35-163 (251)
46 2z66_A Variable lymphocyte rec 98.3 3.6E-08 1.2E-12 90.2 -2.5 181 114-318 52-235 (306)
47 3a79_B TLR6, VLRB.59, TOLL-lik 98.3 1.5E-06 5E-11 86.6 8.9 149 144-318 333-485 (562)
48 2ell_A Acidic leucine-rich nuc 98.3 1.5E-07 5.2E-12 78.1 1.4 109 114-233 24-133 (168)
49 4ezg_A Putative uncharacterize 98.3 3.4E-07 1.1E-11 78.2 3.6 126 113-257 65-191 (197)
50 3vq2_A TLR4, TOLL-like recepto 98.3 1.5E-06 5.3E-11 87.1 8.5 130 114-257 32-163 (606)
51 3rgz_A Protein brassinosteroid 98.3 1.9E-07 6.5E-12 96.6 1.9 150 114-278 100-257 (768)
52 1p9a_G Platelet glycoprotein I 98.3 4.3E-07 1.5E-11 82.6 4.0 198 133-373 24-226 (290)
53 3oja_B Anopheles plasmodium-re 98.3 1.2E-07 4.1E-12 95.3 0.3 150 114-277 51-201 (597)
54 2z81_A CD282 antigen, TOLL-lik 98.3 1.4E-06 4.8E-11 86.3 8.0 210 113-369 309-524 (549)
55 2xwt_C Thyrotropin receptor; s 98.3 6.5E-07 2.2E-11 78.7 5.0 84 115-205 32-118 (239)
56 2o6q_A Variable lymphocyte rec 98.3 3.5E-07 1.2E-11 82.2 3.2 162 132-318 29-193 (270)
57 2z66_A Variable lymphocyte rec 98.3 1.4E-07 4.9E-12 86.2 0.5 177 114-319 28-212 (306)
58 3m19_A Variable lymphocyte rec 98.2 2.5E-07 8.4E-12 82.2 2.0 151 114-278 35-189 (251)
59 1m9s_A Internalin B; cell inva 98.2 2E-07 6.8E-12 93.5 1.5 161 140-318 41-209 (605)
60 1z7x_W Ribonuclease inhibitor; 98.2 1.4E-08 4.7E-13 98.5 -6.9 188 115-318 86-296 (461)
61 3vq2_A TLR4, TOLL-like recepto 98.2 1.8E-07 6.1E-12 93.9 0.6 87 114-204 350-436 (606)
62 1xku_A Decorin; proteoglycan, 98.2 1.2E-06 4.1E-11 80.9 6.2 174 114-319 100-276 (330)
63 3oja_A Leucine-rich immune mol 98.2 4.1E-07 1.4E-11 89.0 3.1 138 115-276 35-177 (487)
64 1wwl_A Monocyte differentiatio 98.2 1.2E-07 4.2E-12 87.1 -0.6 181 109-318 90-286 (312)
65 3rfs_A Internalin B, repeat mo 98.2 2.4E-07 8.1E-12 83.4 1.1 151 113-278 62-215 (272)
66 4eco_A Uncharacterized protein 98.2 5.2E-07 1.8E-11 91.3 3.3 82 115-204 354-445 (636)
67 2z80_A TOLL-like receptor 2, v 98.2 2.7E-07 9.4E-12 86.2 1.0 162 131-318 43-210 (353)
68 1z7x_W Ribonuclease inhibitor; 98.2 3.9E-08 1.3E-12 95.3 -5.1 215 135-376 220-459 (461)
69 2je0_A Acidic leucine-rich nuc 98.2 1E-07 3.5E-12 77.4 -1.8 108 114-232 17-125 (149)
70 2z63_A TOLL-like receptor 4, v 98.2 7.2E-07 2.5E-11 88.7 3.9 143 114-278 282-431 (570)
71 2ca6_A RAN GTPase-activating p 98.2 4.9E-08 1.7E-12 92.5 -4.6 188 114-318 94-315 (386)
72 1p9a_G Platelet glycoprotein I 98.2 1.5E-07 5.1E-12 85.6 -1.2 149 114-278 31-182 (290)
73 3oja_A Leucine-rich immune mol 98.2 5.6E-07 1.9E-11 88.0 2.8 120 140-278 32-154 (487)
74 3t6q_A CD180 antigen; protein- 98.2 1.2E-07 4E-12 95.3 -2.2 81 115-203 255-336 (606)
75 3goz_A Leucine-rich repeat-con 98.2 4.7E-08 1.6E-12 91.9 -4.8 238 114-378 22-287 (362)
76 4glp_A Monocyte differentiatio 98.2 4.9E-07 1.7E-11 82.9 1.9 198 88-318 66-284 (310)
77 3bz5_A Internalin-J, INLJ; leu 98.2 1.2E-06 4E-11 85.0 4.6 17 302-318 208-224 (457)
78 3j0a_A TOLL-like receptor 5; m 98.1 4.4E-06 1.5E-10 87.3 9.1 126 114-257 266-391 (844)
79 3bz5_A Internalin-J, INLJ; leu 98.1 9.4E-07 3.2E-11 85.7 3.7 200 113-380 41-241 (457)
80 4eco_A Uncharacterized protein 98.1 7.1E-07 2.4E-11 90.3 2.8 151 114-279 206-388 (636)
81 3rgz_A Protein brassinosteroid 98.1 1.6E-06 5.6E-11 89.6 5.4 128 139-279 197-329 (768)
82 4ecn_A Leucine-rich repeat pro 98.1 8.6E-07 2.9E-11 92.3 3.2 155 114-279 448-630 (876)
83 3o53_A Protein LRIM1, AGAP0063 98.1 1E-06 3.4E-11 81.1 3.3 120 140-278 32-154 (317)
84 2ell_A Acidic leucine-rich nuc 98.1 6.2E-07 2.1E-11 74.3 1.4 134 142-319 24-160 (168)
85 4glp_A Monocyte differentiatio 98.1 1.5E-06 5.2E-11 79.6 3.0 182 113-318 116-306 (310)
86 2z63_A TOLL-like receptor 4, v 98.0 2.6E-07 8.8E-12 92.0 -2.6 176 114-319 325-507 (570)
87 3v47_A TOLL-like receptor 5B a 98.0 1.5E-06 5.1E-11 83.9 2.8 86 114-204 79-166 (455)
88 2ft3_A Biglycan; proteoglycan, 98.0 2.2E-06 7.5E-11 79.3 3.6 17 302-318 260-276 (332)
89 2xwt_C Thyrotropin receptor; s 98.0 7E-07 2.4E-11 78.5 0.2 129 113-257 54-189 (239)
90 3e6j_A Variable lymphocyte rec 98.0 1.3E-06 4.6E-11 76.3 1.8 135 131-277 31-168 (229)
91 2je0_A Acidic leucine-rich nuc 98.0 7.5E-07 2.6E-11 72.2 0.0 81 142-232 17-100 (149)
92 2ra8_A Uncharacterized protein 98.0 1.5E-06 5.2E-11 81.4 1.5 126 72-201 93-228 (362)
93 3e6j_A Variable lymphocyte rec 98.0 1.8E-06 6.2E-11 75.5 1.9 84 137-223 59-142 (229)
94 2v9t_B SLIT homolog 2 protein 98.0 2.3E-06 7.8E-11 74.4 2.4 135 132-277 24-161 (220)
95 3j0a_A TOLL-like receptor 5; m 98.0 1.5E-05 5.2E-10 83.2 9.1 167 141-318 265-438 (844)
96 1wwl_A Monocyte differentiatio 98.0 6.1E-06 2.1E-10 75.6 5.3 177 114-318 121-308 (312)
97 2e31_A FBS1, F-box only protei 98.0 3.8E-06 1.3E-10 75.5 3.7 37 7-43 49-86 (297)
98 3goz_A Leucine-rich repeat-con 98.0 4.8E-07 1.6E-11 84.9 -2.4 212 88-318 24-265 (362)
99 1ziw_A TOLL-like receptor 3; i 98.0 2.4E-06 8.2E-11 87.0 2.6 84 114-203 381-465 (680)
100 3e4g_A ATP synthase subunit S, 97.9 2.1E-06 7.2E-11 71.3 1.7 97 131-233 50-152 (176)
101 2z62_A TOLL-like receptor 4, v 97.9 2E-06 6.7E-11 77.3 1.3 177 114-319 52-237 (276)
102 2o6s_A Variable lymphocyte rec 97.9 2.8E-06 9.6E-11 72.9 1.8 127 142-277 28-157 (208)
103 1xeu_A Internalin C; cellular 97.9 3E-06 1E-10 75.7 1.9 142 114-279 41-183 (263)
104 4g8a_A TOLL-like receptor 4; l 97.9 2.9E-06 9.8E-11 85.3 1.7 131 114-258 52-184 (635)
105 4ecn_A Leucine-rich repeat pro 97.9 2.8E-06 9.4E-11 88.6 1.3 135 134-279 440-606 (876)
106 2z7x_B TOLL-like receptor 1, v 97.9 4.6E-06 1.6E-10 82.0 2.7 133 133-278 14-148 (520)
107 3l2o_B F-box only protein 4; s 97.9 3.5E-06 1.2E-10 74.9 1.4 35 8-42 4-38 (312)
108 1ds9_A Outer arm dynein; leuci 97.8 1.5E-06 5.1E-11 74.2 -1.0 82 135-223 41-122 (198)
109 3g06_A SSPH2 (leucine-rich rep 97.8 2.3E-05 7.8E-10 78.7 7.5 53 142-204 61-113 (622)
110 2o6s_A Variable lymphocyte rec 97.8 4.3E-06 1.5E-10 71.7 1.8 130 114-257 28-158 (208)
111 2v9t_B SLIT homolog 2 protein 97.8 4E-06 1.4E-10 72.8 1.3 130 114-258 32-163 (220)
112 1ziw_A TOLL-like receptor 3; i 97.8 3.3E-06 1.1E-10 86.0 0.3 64 139-204 70-133 (680)
113 3a79_B TLR6, VLRB.59, TOLL-lik 97.8 8.4E-06 2.9E-10 81.0 3.2 132 133-277 45-178 (562)
114 1a9n_A U2A', U2A'; complex (nu 97.8 1.8E-06 6.3E-11 72.1 -1.4 80 138-223 15-95 (176)
115 3v47_A TOLL-like receptor 5B a 97.7 5.8E-06 2E-10 79.8 0.8 130 141-279 274-406 (455)
116 3v7d_B Cell division control p 97.7 9.8E-06 3.4E-10 78.0 2.1 43 2-44 8-50 (464)
117 3g06_A SSPH2 (leucine-rich rep 97.7 6.3E-05 2.2E-09 75.5 7.6 88 114-223 61-148 (622)
118 2v70_A SLIT-2, SLIT homolog 2 97.7 1.1E-05 3.7E-10 70.0 1.4 127 143-278 33-163 (220)
119 1a9n_A U2A', U2A'; complex (nu 97.6 4.5E-06 1.5E-10 69.7 -1.6 105 114-233 19-126 (176)
120 4g8a_A TOLL-like receptor 4; l 97.6 8.2E-06 2.8E-10 81.9 -0.0 137 130-278 42-183 (635)
121 2xot_A Amphoterin-induced prot 97.6 2.5E-05 8.5E-10 73.1 2.9 134 114-258 39-174 (361)
122 2wfh_A SLIT homolog 2 protein 97.6 2.5E-05 8.5E-10 66.2 2.2 112 133-257 24-136 (193)
123 3cvr_A Invasion plasmid antige 97.5 0.00012 4.1E-09 72.7 7.2 92 141-257 99-190 (571)
124 3e4g_A ATP synthase subunit S, 97.5 1.5E-05 5.3E-10 66.1 0.6 85 164-257 59-149 (176)
125 2ra8_A Uncharacterized protein 97.5 5.4E-05 1.8E-09 70.8 4.1 133 163-317 136-290 (362)
126 2o6r_A Variable lymphocyte rec 97.5 4.3E-05 1.5E-09 63.6 3.1 108 142-258 28-135 (177)
127 1jl5_A Outer protein YOPM; leu 97.5 9.9E-05 3.4E-09 71.3 6.1 117 114-257 131-247 (454)
128 2ovr_B FBW7, F-BOX/WD repeat p 97.5 5.4E-05 1.8E-09 72.5 4.1 41 2-42 12-52 (445)
129 2o6r_A Variable lymphocyte rec 97.5 2.6E-05 9E-10 64.9 1.1 121 144-276 9-132 (177)
130 1p22_A F-BOX/WD-repeat protein 97.4 3.8E-05 1.3E-09 73.4 1.9 41 2-42 4-48 (435)
131 2v70_A SLIT-2, SLIT homolog 2 97.4 4.9E-05 1.7E-09 65.8 1.7 131 114-258 32-164 (220)
132 3un9_A NLR family member X1; l 97.3 9.6E-07 3.3E-11 83.2 -10.5 93 111-204 69-167 (372)
133 1jl5_A Outer protein YOPM; leu 97.3 0.0002 6.8E-09 69.2 5.6 115 142-277 131-246 (454)
134 1dce_A Protein (RAB geranylger 97.3 7.2E-05 2.4E-09 74.4 1.9 97 115-223 442-540 (567)
135 3cvr_A Invasion plasmid antige 97.2 0.00043 1.5E-08 68.7 7.1 133 113-278 99-240 (571)
136 3g39_A Variable lymphocyte rec 97.2 0.00024 8.1E-09 58.7 4.3 94 131-232 21-114 (170)
137 2r9u_A Variable lymphocyte rec 97.2 0.00026 8.8E-09 58.8 4.3 95 131-233 24-118 (174)
138 1w8a_A SLIT protein; signaling 97.2 9.2E-05 3.2E-09 62.6 1.5 115 132-258 21-137 (192)
139 2xot_A Amphoterin-induced prot 97.2 0.00022 7.7E-09 66.5 4.0 130 114-257 64-199 (361)
140 4ay9_X Follicle-stimulating ho 97.2 0.00048 1.6E-08 64.0 6.2 175 114-319 30-215 (350)
141 2r9u_A Variable lymphocyte rec 97.2 0.00015 5E-09 60.3 2.4 103 144-258 14-116 (174)
142 3g39_A Variable lymphocyte rec 97.1 0.00016 5.4E-09 59.8 2.3 104 143-258 10-113 (170)
143 1w8a_A SLIT protein; signaling 97.0 0.00033 1.1E-08 59.0 3.2 107 115-232 30-138 (192)
144 2ifg_A High affinity nerve gro 97.0 0.00018 6.2E-09 66.6 1.6 89 131-223 21-110 (347)
145 1dce_A Protein (RAB geranylger 96.9 0.0003 1E-08 69.9 1.9 85 113-205 462-546 (567)
146 2wfh_A SLIT homolog 2 protein 96.8 0.00082 2.8E-08 56.7 4.3 103 114-223 31-133 (193)
147 4b8c_D Glucose-repressible alc 96.8 0.00012 4.2E-09 74.9 -1.7 68 133-204 238-305 (727)
148 4b8c_D Glucose-repressible alc 96.7 0.00023 7.9E-09 72.9 -0.2 110 135-257 217-326 (727)
149 4ay9_X Follicle-stimulating ho 96.5 0.002 6.8E-08 59.7 4.7 133 131-277 21-163 (350)
150 1ds9_A Outer arm dynein; leuci 96.5 0.00071 2.4E-08 57.2 1.5 104 113-232 47-152 (198)
151 1io0_A Tropomodulin; LRR prote 96.2 0.0006 2E-08 57.2 -0.6 65 139-204 62-135 (185)
152 1io0_A Tropomodulin; LRR prote 96.1 0.00012 4.1E-09 61.5 -5.8 90 114-203 65-162 (185)
153 3sb4_A Hypothetical leucine ri 95.8 0.0028 9.5E-08 58.1 1.9 36 141-177 100-135 (329)
154 2ifg_A High affinity nerve gro 95.4 0.0063 2.1E-07 56.1 2.5 83 114-204 31-115 (347)
155 3un9_A NLR family member X1; l 94.3 0.004 1.4E-07 58.3 -1.9 139 87-233 102-252 (372)
156 4fdw_A Leucine rich hypothetic 93.0 0.019 6.4E-07 54.3 0.1 58 140-201 178-235 (401)
157 3rw6_A Nuclear RNA export fact 92.8 0.017 6E-07 51.1 -0.3 80 114-197 170-256 (267)
158 3sb4_A Hypothetical leucine ri 92.7 0.03 1E-06 51.1 1.1 35 141-175 225-259 (329)
159 3rw6_A Nuclear RNA export fact 91.4 0.08 2.7E-06 46.8 2.2 65 163-232 167-232 (267)
160 1pgv_A TMD-1, tropomodulin TMD 78.3 0.3 1E-05 40.9 -1.0 35 166-201 98-135 (197)
161 3rfe_A Platelet glycoprotein I 76.7 1.7 5.8E-05 33.5 3.1 38 142-179 31-68 (130)
162 1pgv_A TMD-1, tropomodulin TMD 73.5 0.26 8.7E-06 41.3 -2.6 39 166-204 70-110 (197)
163 4fdw_A Leucine rich hypothetic 64.8 4.6 0.00016 37.6 3.7 84 134-223 240-330 (401)
164 4h09_A Hypothetical leucine ri 54.9 4.2 0.00014 37.3 1.5 75 138-223 259-340 (379)
165 4gt6_A Cell surface protein; l 53.8 9.9 0.00034 35.0 3.9 79 138-223 284-364 (394)
166 4fs7_A Uncharacterized protein 46.4 6.9 0.00024 36.1 1.5 79 137-223 292-373 (394)
167 4fs7_A Uncharacterized protein 42.4 11 0.00036 34.8 2.1 60 137-202 315-376 (394)
168 4gt6_A Cell surface protein; l 41.1 18 0.00061 33.2 3.5 77 138-223 307-385 (394)
169 3rfe_A Platelet glycoprotein I 35.3 18 0.00061 27.5 2.0 37 166-204 31-67 (130)
170 2kwv_A RAD30 homolog B, DNA po 31.9 32 0.0011 20.8 2.2 19 5-23 17-35 (48)
171 4h09_A Hypothetical leucine ri 30.4 24 0.00083 32.0 2.5 83 137-223 235-317 (379)
172 2lz0_A Uncharacterized protein 21.9 73 0.0025 22.8 3.2 13 188-200 39-51 (100)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=1.8e-20 Score=188.71 Aligned_cols=321 Identities=14% Similarity=0.101 Sum_probs=159.9
Q ss_pred CCCCCCCcCC----CCChHHHHHHHccC-ChHHHHHHHHhhhchHHhhcccccc-eEEEeeCCCCCCCCCCccchhHHHH
Q 045124 1 MPPRRRNFFY----GLPDDILRHIIACL-PTKNAVGTSLISRQWIDLWTEVEFH-QLALDDSDLLEPDLSPDTIAWSFQE 74 (390)
Q Consensus 1 ~~~~~~D~is----~LPd~iL~~Ils~L-p~~~~~rts~lSrrWr~lw~~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~ 74 (390)
|++++.||++ .||||++.+||+|| +.+|++++++|||||++++... + .+.+... + ..
T Consensus 1 m~~~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~--~~~l~~~~~-~--------------~~ 63 (592)
T 3ogk_B 1 MEDPDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSET--REHVTMALC-Y--------------TA 63 (592)
T ss_dssp -----------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHH--CCEEEESCG-G--------------GS
T ss_pred CCChhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhcc--ccEEEEeec-c--------------cc
Confidence 7788888888 89999999999999 8999999999999999986444 2 2222111 1 01
Q ss_pred HHHHHhcccCCCceeEEEEEEccC---------CChhHHHHHHHHHH--hCCeeEEEEEeccCCCCceecCCCCCcc-CC
Q 045124 75 FVSDILDRVNLLVIRRFYLHCLQS---------YDAEVLRDWVVRGW--TNNVVEVDIRVDNINEDNFLDLPSNLCT-ST 142 (390)
Q Consensus 75 ~v~~~l~~~~~~~l~~l~l~~~~~---------~~~~~~~~wl~~~~--~~~v~~L~L~~~~~~~~~~~~lp~~l~~-c~ 142 (390)
.+..++.+.+. ++.+.+..... ........|+.... .+++++|+|..+... ...+..+.. |+
T Consensus 64 ~~~~~~~~~~~--L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~----~~~~~~l~~~~~ 137 (592)
T 3ogk_B 64 TPDRLSRRFPN--LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS----DLDLDRLAKARA 137 (592)
T ss_dssp CHHHHHHHCTT--CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC----HHHHHHHHHHHG
T ss_pred ChHHHHHhCCC--CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEec----HHHHHHHHHhcc
Confidence 12233333333 67777755221 11222334555433 256777777544110 011111122 33
Q ss_pred c-ccEEEEcCeeecCCC--CCCcccCCcccEEEeeeEEECCC--chHhHhhhcCCccceEEEeceecCCCC--e--eEEE
Q 045124 143 A-LEVLKLQGNITLDPD--PDQRVIFPSLRILHMDVIQLGVS--GHHRDLYRCCPVLDDLYVRGNIAEPLP--F--QFDV 213 (390)
Q Consensus 143 ~-L~~L~L~~~~~~~~~--~~~~~~~~~Lk~L~L~~v~~~~~--~~l~~ll~~cp~Le~L~l~~c~~~~~~--~--~l~i 213 (390)
+ |++|+|.+|...... .....++++|++|+|.++.+.+. ..+..+..+||.|+.|++.++...... . .+..
T Consensus 138 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 3 777777666421100 00112566677777766665431 115556666666666666655442111 0 0111
Q ss_pred EccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeee---------------------------cc--cceeee
Q 045124 214 VSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRE---------------------------NF--FAQYIL 264 (390)
Q Consensus 214 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~---------------------------~~--~~~~~~ 264 (390)
.+++|+.|.+ .+|..... .......|+|+.|.+++ .. .....+
T Consensus 218 ~~~~L~~L~L----~~~~~~~l----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~ 289 (592)
T 3ogk_B 218 NCRSLVSVKV----GDFEILEL----VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF 289 (592)
T ss_dssp HCTTCCEEEC----SSCBGGGG----HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG
T ss_pred hCCCCcEEec----cCccHHHH----HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHH
Confidence 3456666666 44443211 11222344555555442 11 011223
Q ss_pred ccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccccccCCCCCCcccccccCCCccchhhc
Q 045124 265 RNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTVGEAKGEFPDCVQRWEERDVPADCLRN 344 (390)
Q Consensus 265 ~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~w~~~~~~~~c~~~ 344 (390)
.++++|+++++..+. -....+..++..||+|+.|.+...... .. .. .... ...
T Consensus 290 ~~~~~L~~L~Ls~~~-------------l~~~~~~~~~~~~~~L~~L~L~~~~~~---~~-------l~---~~~~-~~~ 342 (592)
T 3ogk_B 290 PFAAQIRKLDLLYAL-------------LETEDHCTLIQKCPNLEVLETRNVIGD---RG-------LE---VLAQ-YCK 342 (592)
T ss_dssp GGGGGCCEEEETTCC-------------CCHHHHHHHHTTCTTCCEEEEEGGGHH---HH-------HH---HHHH-HCT
T ss_pred hhcCCCcEEecCCCc-------------CCHHHHHHHHHhCcCCCEEeccCccCH---HH-------HH---HHHH-hCC
Confidence 445566666654322 124556677888999999988832110 00 00 0101 125
Q ss_pred ccceEEEEe----------cCCchhHHHHHHHHHhcccccceEEEEE
Q 045124 345 CLRGISVRG----------FGGKLHELQVIEYLLKNARVLRRMDIYA 381 (390)
Q Consensus 345 ~Lk~v~i~~----------~~g~~~e~~~~~~ll~~a~~Le~l~i~~ 381 (390)
+|+.+.+.+ +... . -.-+..+.++.++|+.+.+..
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~-~-~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLV-S-QRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCC-C-HHHHHHHHHHCTTCSEEEEEE
T ss_pred CCCEEEeecCccccccccccCcc-C-HHHHHHHHhhCccCeEEEeec
Confidence 799999983 3222 1 122345567889999998843
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=9.4e-20 Score=183.42 Aligned_cols=195 Identities=11% Similarity=0.150 Sum_probs=109.2
Q ss_pred CCCcCCCCChHHHHHHHccCC-hHHHHHHHHhhhchHHhhcccccceEEEeeCCCCCCCCCCccchhHHHHHHHHHhccc
Q 045124 5 RRNFFYGLPDDILRHIIACLP-TKNAVGTSLISRQWIDLWTEVEFHQLALDDSDLLEPDLSPDTIAWSFQEFVSDILDRV 83 (390)
Q Consensus 5 ~~D~is~LPd~iL~~Ils~Lp-~~~~~rts~lSrrWr~lw~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~ 83 (390)
++|+++.|||||+.+||++|| .+|+++++.|||||+++.... +..+++....... ...++.+.
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~-~~~l~~~~~~~~~---------------~~~~~~~~ 65 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWC-RRKVFIGNCYAVS---------------PATVIRRF 65 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHH-CCEEEESSTTSSC---------------HHHHHHHC
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhh-ceEEeeccccccC---------------HHHHHhhC
Confidence 359999999999999999999 999999999999999883221 1344443322210 01122222
Q ss_pred CCCceeEEEEEEccCC---------ChhHHHHHHHHHH--hCCeeEEEEEeccCCCCceecCCCCCc-cCCcccEEEEcC
Q 045124 84 NLLVIRRFYLHCLQSY---------DAEVLRDWVVRGW--TNNVVEVDIRVDNINEDNFLDLPSNLC-TSTALEVLKLQG 151 (390)
Q Consensus 84 ~~~~l~~l~l~~~~~~---------~~~~~~~wl~~~~--~~~v~~L~L~~~~~~~~~~~~lp~~l~-~c~~L~~L~L~~ 151 (390)
+.++.+.+...... ....+..|+.... .+++++|+|..+... ...+..+. .|++|++|+|.+
T Consensus 66 --~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~----~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 66 --PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT----DDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp --TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC----HHHHHHHHHHCTTCCEEEEES
T ss_pred --CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc----HHHHHHHHHhCCCCcEEeCCC
Confidence 23777777764311 1134456776544 357888888654111 11112222 467888888887
Q ss_pred ee-ecC--CCCCCcccCCcccEEEeeeEEECCC--chHhHhhhcCCccceEEEeceec-CC---CCeeEEEEccceeEEE
Q 045124 152 NI-TLD--PDPDQRVIFPSLRILHMDVIQLGVS--GHHRDLYRCCPVLDDLYVRGNIA-EP---LPFQFDVVSTSVRNLN 222 (390)
Q Consensus 152 ~~-~~~--~~~~~~~~~~~Lk~L~L~~v~~~~~--~~l~~ll~~cp~Le~L~l~~c~~-~~---~~~~l~i~~~~L~~L~ 222 (390)
|. +.+ ++ ....++++|++|+|+++.+.+. ..+..+...||+|++|++.+|.. .. +.. +...+|+|++|.
T Consensus 140 ~~~~~~~~l~-~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-l~~~~~~L~~L~ 217 (594)
T 2p1m_B 140 CEGFSTDGLA-AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER-LVTRCPNLKSLK 217 (594)
T ss_dssp CEEEEHHHHH-HHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH-HHHHCTTCCEEE
T ss_pred cCCCCHHHHH-HHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH-HHHhCCCCcEEe
Confidence 73 221 11 0223678888888887776541 23555666778888888877751 00 111 111346777777
Q ss_pred e
Q 045124 223 S 223 (390)
Q Consensus 223 i 223 (390)
+
T Consensus 218 L 218 (594)
T 2p1m_B 218 L 218 (594)
T ss_dssp C
T ss_pred c
Confidence 7
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=1.1e-20 Score=176.67 Aligned_cols=241 Identities=18% Similarity=0.180 Sum_probs=117.7
Q ss_pred CCCCcCCCCChHHHHHHHccCChHHHHHHHHhhhchHHhhccc-ccceEEEeeCCCCCCCCCCccchhHHHHHHHHHhcc
Q 045124 4 RRRNFFYGLPDDILRHIIACLPTKNAVGTSLISRQWIDLWTEV-EFHQLALDDSDLLEPDLSPDTIAWSFQEFVSDILDR 82 (390)
Q Consensus 4 ~~~D~is~LPd~iL~~Ils~Lp~~~~~rts~lSrrWr~lw~~~-~~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 82 (390)
.....++.||||++.+||++|+.+|+++++.|||||+++.... -|..+++....+. . +.+...+..
T Consensus 4 ~~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~---------~----~~~~~~~~~ 70 (336)
T 2ast_B 4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH---------P----DVTGRLLSQ 70 (336)
T ss_dssp ---CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC---------H----HHHHHHHHT
T ss_pred cccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC---------H----HHHHhhhhc
Confidence 3445689999999999999999999999999999999986322 1245555433321 0 122222111
Q ss_pred cCCCceeEEEEEEccCCC-hhHHHHHHHHHHhCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCC
Q 045124 83 VNLLVIRRFYLHCLQSYD-AEVLRDWVVRGWTNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQ 161 (390)
Q Consensus 83 ~~~~~l~~l~l~~~~~~~-~~~~~~wl~~~~~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~ 161 (390)
.++.+.+....... ... .....++++|+|..+.. ....+|..+..|++|++|+|++|.+.+..+..
T Consensus 71 ----~l~~L~l~~n~l~~~~~~------~~~~~~L~~L~L~~~~l---~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 137 (336)
T 2ast_B 71 ----GVIAFRCPRSFMDQPLAE------HFSPFRVQHMDLSNSVI---EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 137 (336)
T ss_dssp ----TCSEEECTTCEECSCCCS------CCCCBCCCEEECTTCEE---CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH
T ss_pred ----cceEEEcCCccccccchh------hccCCCCCEEEccCCCc---CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH
Confidence 13333322111000 000 00124556666543310 01113444455666666666666432111112
Q ss_pred cccCCcccEEEeeeE-EECCCchHhHhhhcCCccceEEEece-ecCC--CCeeEEEEcc-ceeEEEeeeeeccCC--CCC
Q 045124 162 RVIFPSLRILHMDVI-QLGVSGHHRDLYRCCPVLDDLYVRGN-IAEP--LPFQFDVVST-SVRNLNSEFYLEDKH--FDN 234 (390)
Q Consensus 162 ~~~~~~Lk~L~L~~v-~~~~~~~l~~ll~~cp~Le~L~l~~c-~~~~--~~~~l~i~~~-~L~~L~i~~~~~~~~--~~~ 234 (390)
...+++|++|+|+++ .+.+ ..+..++.+||.|++|++.+| ...+ +.. ..-..| +|+.|.+ .+|. +..
T Consensus 138 l~~~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l----~~~~~~~~~ 211 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNL----SGYRKNLQK 211 (336)
T ss_dssp HTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEEC----CSCGGGSCH
T ss_pred HhcCCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEe----CCCcccCCH
Confidence 334666666666666 3332 345566666666666666666 3221 001 111335 6666666 4442 110
Q ss_pred CCCCcceEEEecCccceEEeeeccc----ceeeeccCCcceeEEeeee
Q 045124 235 EDNVSLTFEINTQNLVCLELRENFF----AQYILRNLNLLEKADIGIG 278 (390)
Q Consensus 235 ~~~~~~~~~i~ap~L~~L~~~~~~~----~~~~~~~~~~L~~l~l~~~ 278 (390)
. ......-..|+|+.|+++++.. ....+.++++|+++++..+
T Consensus 212 ~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 212 S--DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp H--HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred H--HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 0 0011122456666666655431 1223455566666666433
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.94 E-value=1.2e-09 Score=101.51 Aligned_cols=153 Identities=16% Similarity=0.134 Sum_probs=96.4
Q ss_pred HHHHHhCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHh
Q 045124 108 VVRGWTNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDL 187 (390)
Q Consensus 108 l~~~~~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~l 187 (390)
+..+...+|++|+|.... ...+|..++.+++|++|+|+++.+..+|. ....+++|++|+|+++.+. .+..-
T Consensus 75 l~~~~~~~l~~L~L~~n~-----l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~---~lp~~ 145 (328)
T 4fcg_A 75 LEDATQPGRVALELRSVP-----LPQFPDQAFRLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLR---ALPAS 145 (328)
T ss_dssp HHHHTSTTCCEEEEESSC-----CSSCCSCGGGGTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCC---CCCGG
T ss_pred HhcccccceeEEEccCCC-----chhcChhhhhCCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccc---cCcHH
Confidence 333444678888886551 23677778888888888888887665552 4567888888888887765 24445
Q ss_pred hhcCCccceEEEeceecCC-CCeeEE--------EEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecc
Q 045124 188 YRCCPVLDDLYVRGNIAEP-LPFQFD--------VVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENF 258 (390)
Q Consensus 188 l~~cp~Le~L~l~~c~~~~-~~~~l~--------i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 258 (390)
+..++.|+.|+|.+|.... +...+. -..++|+.|.+ .++.+... ....-..++|+.|+++++.
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L----~~n~l~~l----p~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL----EWTGIRSL----PASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEE----EEECCCCC----CGGGGGCTTCCEEEEESSC
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEEC----cCCCcCcc----hHhhcCCCCCCEEEccCCC
Confidence 6778888888888875421 111011 13677888888 55544321 1112246678888887753
Q ss_pred cc--eeeeccCCcceeEEeee
Q 045124 259 FA--QYILRNLNLLEKADIGI 277 (390)
Q Consensus 259 ~~--~~~~~~~~~L~~l~l~~ 277 (390)
.. ...+.++++|++++++.
T Consensus 218 l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 218 LSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp CCCCCGGGGGCTTCCEEECTT
T ss_pred CCcCchhhccCCCCCEEECcC
Confidence 21 22466777888777754
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.79 E-value=2.1e-09 Score=107.74 Aligned_cols=264 Identities=9% Similarity=-0.022 Sum_probs=156.2
Q ss_pred eeEEEEEEccCCChhHHHHHHHHHHhCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCC----CCcc
Q 045124 88 IRRFYLHCLQSYDAEVLRDWVVRGWTNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDP----DQRV 163 (390)
Q Consensus 88 l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~----~~~~ 163 (390)
++.+.+.... -.+....|+......++++|+|..+ .. .....++.....|++|++|+|++|.+.+... ....
T Consensus 114 L~~L~L~~~~--i~~~~~~~l~~~~~~~L~~L~L~~~-~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 114 LKSVHFRRMI--VSDLDLDRLAKARADDLETLKLDKC-SG-FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp CCEEEEESCB--CCHHHHHHHHHHHGGGCCEEEEESC-EE-EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCeEEeeccE--ecHHHHHHHHHhccccCcEEECcCC-CC-cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 8888887542 2334456666655567999999765 11 1112233333468999999999997644321 0234
Q ss_pred cCCcccEEEeeeEEEC--CCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeEEEeeeee--------------
Q 045124 164 IFPSLRILHMDVIQLG--VSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYL-------------- 227 (390)
Q Consensus 164 ~~~~Lk~L~L~~v~~~--~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~-------------- 227 (390)
.+++|++|+|++..+. +...+..++.+||.|+.|+|.+|....+.. .-...++|+.|.+..+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH-HHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 7899999999988775 225788888999999999999986532211 11123455555552100
Q ss_pred ---------ccCCCCCCCCCcceEEEecCccceEEeeecccc----eeeeccCCcceeEEeeeeeeeecCCCCccCCCcc
Q 045124 228 ---------EDKHFDNEDNVSLTFEINTQNLVCLELRENFFA----QYILRNLNLLEKADIGIGGVFMCPRGGGFDFDHW 294 (390)
Q Consensus 228 ---------~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~ 294 (390)
..+... ....+.-..++|++|+++++... ...+.++++|+++++... ..
T Consensus 269 ~~~L~~L~l~~~~~~----~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--------------~~ 330 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN----EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--------------IG 330 (592)
T ss_dssp CTTCCEEEETTCCTT----TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--------------GH
T ss_pred cccccccCccccchh----HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--------------cC
Confidence 221110 11122235789999999875421 123578999999998511 12
Q ss_pred HHHHHhhhccCCCccEEEEec-ccccccCCCCCCcc-cccccCCCccchhhcccceEEEEecCCchhHHHHHHHHHhccc
Q 045124 295 SDERISFLPEVYNVNSLALSG-CTVGEAKGEFPDCV-QRWEERDVPADCLRNCLRGISVRGFGGKLHELQVIEYLLKNAR 372 (390)
Q Consensus 295 ~~~l~~lL~~~p~L~~L~l~~-~~~~~~~~~~~~~~-~~w~~~~~~~~c~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~ 372 (390)
...+..+.+.||+|++|.|.. .........+.... .... .... ...+|+.+.+.+-.-+ -.....+.++.+
T Consensus 331 ~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~---~l~~-~~~~L~~L~l~~~~l~---~~~~~~l~~~~~ 403 (592)
T 3ogk_B 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI---ALAQ-GCQELEYMAVYVSDIT---NESLESIGTYLK 403 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH---HHHH-HCTTCSEEEEEESCCC---HHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH---HHHh-hCccCeEEEeecCCcc---HHHHHHHHhhCC
Confidence 467788889999999999994 11111000000000 0000 0011 1367999988432222 233455667789
Q ss_pred ccceEEEEE
Q 045124 373 VLRRMDIYA 381 (390)
Q Consensus 373 ~Le~l~i~~ 381 (390)
+|+.+.+..
T Consensus 404 ~L~~L~l~~ 412 (592)
T 3ogk_B 404 NLCDFRLVL 412 (592)
T ss_dssp SCCEEEEEE
T ss_pred CCcEEEEee
Confidence 999999974
No 6
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.78 E-value=3.5e-09 Score=69.96 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=34.2
Q ss_pred CCCCcCCCCChHHHHHHHccCChHHHHHHHHhhhchHHhhc
Q 045124 4 RRRNFFYGLPDDILRHIIACLPTKNAVGTSLISRQWIDLWT 44 (390)
Q Consensus 4 ~~~D~is~LPd~iL~~Ils~Lp~~~~~rts~lSrrWr~lw~ 44 (390)
...+.++.||+||+.+||++||.+|.++++.|||+|+.+..
T Consensus 4 ~~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp -----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 34568999999999999999999999999999999998654
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.77 E-value=2.3e-09 Score=99.56 Aligned_cols=208 Identities=14% Similarity=0.072 Sum_probs=137.6
Q ss_pred HHHHHhcccCCCceeEEEEEEccCCChhHHHHHHHHHHhCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeee
Q 045124 75 FVSDILDRVNLLVIRRFYLHCLQSYDAEVLRDWVVRGWTNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNIT 154 (390)
Q Consensus 75 ~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~ 154 (390)
.+...+.......+..+.+....... +...+. -...++.|+|..+. ...+|..+..+++|++|+|++|.+
T Consensus 70 ~~~~~l~~~~~~~l~~L~L~~n~l~~---lp~~l~--~l~~L~~L~L~~n~-----l~~lp~~~~~l~~L~~L~Ls~n~l 139 (328)
T 4fcg_A 70 ATADLLEDATQPGRVALELRSVPLPQ---FPDQAF--RLSHLQHMTIDAAG-----LMELPDTMQQFAGLETLTLARNPL 139 (328)
T ss_dssp HHHHHHHHHTSTTCCEEEEESSCCSS---CCSCGG--GGTTCSEEEEESSC-----CCCCCSCGGGGTTCSEEEEESCCC
T ss_pred hhHHHHhcccccceeEEEccCCCchh---cChhhh--hCCCCCEEECCCCC-----ccchhHHHhccCCCCEEECCCCcc
Confidence 33344443333448888887644211 111111 14688999997652 227888888999999999999987
Q ss_pred cCCCCCCcccCCcccEEEeeeEEECCCchHhH---------hhhcCCccceEEEeceecCCCCeeEEEEccceeEEEeee
Q 045124 155 LDPDPDQRVIFPSLRILHMDVIQLGVSGHHRD---------LYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEF 225 (390)
Q Consensus 155 ~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~---------ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~ 225 (390)
..+|. ....+++|++|+|+++.+.+ .+.. .+.+++.|+.|+|.+|....+.. .--..++|+.|.+
T Consensus 140 ~~lp~-~l~~l~~L~~L~L~~n~~~~--~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L-- 213 (328)
T 4fcg_A 140 RALPA-SIASLNRLRELSIRACPELT--ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKI-- 213 (328)
T ss_dssp CCCCG-GGGGCTTCCEEEEEEETTCC--CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG-GGGGCTTCCEEEE--
T ss_pred ccCcH-HHhcCcCCCEEECCCCCCcc--ccChhHhhccchhhhccCCCCCEEECcCCCcCcchH-hhcCCCCCCEEEc--
Confidence 76663 56789999999999986543 2222 23459999999999997643322 1014578999999
Q ss_pred eeccCCCCCCCCCcceEEEecCccceEEeeeccc---ceeeeccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhh
Q 045124 226 YLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF---AQYILRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFL 302 (390)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL 302 (390)
.+|.+... ....-..++|+.|+++++.. ....+.++++|+.+++..+... ..+..-+
T Consensus 214 --~~N~l~~l----~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~--------------~~~p~~~ 273 (328)
T 4fcg_A 214 --RNSPLSAL----GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL--------------LTLPLDI 273 (328)
T ss_dssp --ESSCCCCC----CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC--------------CBCCTTG
T ss_pred --cCCCCCcC----chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch--------------hhcchhh
Confidence 67766432 11122678999999988532 2335778999999998654311 1122236
Q ss_pred ccCCCccEEEEecccc
Q 045124 303 PEVYNVNSLALSGCTV 318 (390)
Q Consensus 303 ~~~p~L~~L~l~~~~~ 318 (390)
..+++|+.|.|+.+..
T Consensus 274 ~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 274 HRLTQLEKLDLRGCVN 289 (328)
T ss_dssp GGCTTCCEEECTTCTT
T ss_pred hcCCCCCEEeCCCCCc
Confidence 7899999999998754
No 8
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.75 E-value=3e-08 Score=92.76 Aligned_cols=228 Identities=14% Similarity=0.067 Sum_probs=136.0
Q ss_pred CCeeEEEEEeccCCCCceecCCC-CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPS-NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~-~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
.++++|++..+. ...+|. .+..+++|++|+|+++.+...++.....+++|++|+|++..+.+ .-...+..++
T Consensus 52 ~~L~~L~l~~n~-----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNR-----ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN--LSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS--CCHHHHTTCT
T ss_pred ccCcEEECCCCc-----CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc--CCHhHhCCCc
Confidence 578888886541 223444 56778999999999987766554456788999999999887764 2234567899
Q ss_pred ccceEEEeceecCCCCe-eEEEEccceeEEEeeeeeccCC-CCCCCCCcceEEEecCccceEEeeecccc---eeeeccC
Q 045124 193 VLDDLYVRGNIAEPLPF-QFDVVSTSVRNLNSEFYLEDKH-FDNEDNVSLTFEINTQNLVCLELRENFFA---QYILRNL 267 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~-~l~i~~~~L~~L~i~~~~~~~~-~~~~~~~~~~~~i~ap~L~~L~~~~~~~~---~~~~~~~ 267 (390)
+|++|++.+|....+.. ..--..++|+.|.+ .++. .... .....-..++|+.|++++.... ...+.++
T Consensus 125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l----~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRV----GNMDTFTKI---QRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEE----EESSSCCEE---CTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred cCCEEECCCCCCcccCchhhhccCCCCcEEEC----CCCcccccc---CHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 99999999887643211 00014578999999 5553 2110 0001124678999999886432 2346778
Q ss_pred CcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccccccCCCCCCcccccccCCCccchhhcccc
Q 045124 268 NLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTVGEAKGEFPDCVQRWEERDVPADCLRNCLR 347 (390)
Q Consensus 268 ~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk 347 (390)
++|++++++.+.. ...-..++..+++|+.|.++.......... . ... . -....++
T Consensus 198 ~~L~~L~l~~n~l--------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~----l~~---~--~~~~~l~ 252 (353)
T 2z80_A 198 QNVSHLILHMKQH--------------ILLLEIFVDVTSSVECLELRDTDLDTFHFS--E----LST---G--ETNSLIK 252 (353)
T ss_dssp SEEEEEEEECSCS--------------TTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------CCCCCC
T ss_pred ccCCeecCCCCcc--------------ccchhhhhhhcccccEEECCCCcccccccc--c----ccc---c--cccchhh
Confidence 8899888864431 011233456789999999998765321000 0 000 0 0123455
Q ss_pred eEEEEecCCchhHHHHHHHHHhcccccceEEEE
Q 045124 348 GISVRGFGGKLHELQVIEYLLKNARVLRRMDIY 380 (390)
Q Consensus 348 ~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i~ 380 (390)
.+.+.+..-+...+.-+-..+.+.++|+.+.+.
T Consensus 253 ~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls 285 (353)
T 2z80_A 253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285 (353)
T ss_dssp EEEEESCBCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred ccccccccccCcchhhhHHHHhcccCCCEEECC
Confidence 555555443333333233344666666666653
No 9
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.68 E-value=1.5e-09 Score=100.81 Aligned_cols=182 Identities=12% Similarity=0.065 Sum_probs=109.7
Q ss_pred HHHHHhCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecC--CCCCCcccCCcccEEEeeeEEECCCchHh
Q 045124 108 VVRGWTNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLD--PDPDQRVIFPSLRILHMDVIQLGVSGHHR 185 (390)
Q Consensus 108 l~~~~~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~--~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~ 185 (390)
+.....++++.+++... .....++.++.+++|++|+|++|.+.. .+ .....+++|++|+|+++.+.+ ...
T Consensus 64 ~~~~~~~~l~~L~l~~n-----~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~--~~~ 135 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRS-----FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQNLSLEGLRLSD--PIV 135 (336)
T ss_dssp HHHHHHTTCSEEECTTC-----EECSCCCSCCCCBCCCEEECTTCEECHHHHH-HHHTTBCCCSEEECTTCBCCH--HHH
T ss_pred HHhhhhccceEEEcCCc-----cccccchhhccCCCCCEEEccCCCcCHHHHH-HHHhhCCCCCEEeCcCcccCH--HHH
Confidence 44444577888887543 122334446678888888888886532 22 134568888888888887653 344
Q ss_pred HhhhcCCccceEEEeceec-CC--CCeeEEEEccceeEEEeeeeeccC-CCCCCCCCcceEEEecC-ccceEEeeecc--
Q 045124 186 DLYRCCPVLDDLYVRGNIA-EP--LPFQFDVVSTSVRNLNSEFYLEDK-HFDNEDNVSLTFEINTQ-NLVCLELRENF-- 258 (390)
Q Consensus 186 ~ll~~cp~Le~L~l~~c~~-~~--~~~~l~i~~~~L~~L~i~~~~~~~-~~~~~~~~~~~~~i~ap-~L~~L~~~~~~-- 258 (390)
..+..||.|++|+|.+|.. .+ +.. +.-..++|+.|.+ .+| ..... +........| +|++|+++++.
T Consensus 136 ~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l----~~~~~l~~~--~~~~~~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 136 NTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNL----SWCFDFTEK--HVQVAVAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp HHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEEC----CCCTTCCHH--HHHHHHHHSCTTCCEEECCSCGGG
T ss_pred HHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcC----CCCCCcChH--HHHHHHHhcccCCCEEEeCCCccc
Confidence 4566788888888888843 21 111 1114578888888 666 44210 0112233567 88888887762
Q ss_pred c----ceeeeccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEeccc
Q 045124 259 F----AQYILRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCT 317 (390)
Q Consensus 259 ~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~ 317 (390)
. ....+.++++|+++++..+..+. ......+..+|+|+.|.|+.+.
T Consensus 209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~-------------~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 209 LQKSDLSTLVRRCPNLVHLDLSDSVMLK-------------NDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp SCHHHHHHHHHHCTTCSEEECTTCTTCC-------------GGGGGGGGGCTTCCEEECTTCT
T ss_pred CCHHHHHHHHhhCCCCCEEeCCCCCcCC-------------HHHHHHHhCCCCCCEeeCCCCC
Confidence 1 12245678888888885443111 1122235667888888888764
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.64 E-value=8.2e-08 Score=95.22 Aligned_cols=230 Identities=14% Similarity=0.068 Sum_probs=139.9
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
..+++|+|..+. -....|..+..+++|++|+|++|.+...++.....+++|++|+|++..+.+ .....+.++++
T Consensus 26 ~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNK----ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS--LSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSC----CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS--CCHHHHTTCTT
T ss_pred CCccEEECcCCc----cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc--cCHHHhccCCC
Confidence 578888886551 122335567778999999999998766665567789999999999988764 33455778999
Q ss_pred cceEEEeceecCCCCe-eEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc---eeeeccCCc
Q 045124 194 LDDLYVRGNIAEPLPF-QFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA---QYILRNLNL 269 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~-~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~---~~~~~~~~~ 269 (390)
|++|++.+|....... ..--..++|+.|.+ .++..... ......-..++|+.|++++.... ...+.++++
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L----~~n~~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI----GNVETFSE--IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEE----EESSSCCE--ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEEC----CCCccccc--cCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 9999999987643211 01114578999999 55542210 00001124678999999886432 234667888
Q ss_pred ceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccccccCCCCCCcccccccCCCccchhhcccceE
Q 045124 270 LEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTVGEAKGEFPDCVQRWEERDVPADCLRNCLRGI 349 (390)
Q Consensus 270 L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v 349 (390)
|++++++.... ...-..+...+++|+.|.++......... .. ..... ...+|+.+
T Consensus 174 L~~L~l~~n~~--------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~-----~~~~~-~~~~L~~L 228 (549)
T 2z81_A 174 IHHLTLHLSES--------------AFLLEIFADILSSVRYLELRDTNLARFQF-----SP-----LPVDE-VSSPMKKL 228 (549)
T ss_dssp EEEEEEECSBS--------------TTHHHHHHHSTTTBSEEEEESCBCTTCCC-----CC-----CSSCC-CCCCCCEE
T ss_pred CceEecccCcc--------------cccchhhHhhcccccEEEccCCccccccc-----cc-----cchhh-hhhcccce
Confidence 88888854321 01122234568999999999875532100 00 00111 13567777
Q ss_pred EEEecCCchhHHHHHHHHHhcccccceEEEE
Q 045124 350 SVRGFGGKLHELQVIEYLLKNARVLRRMDIY 380 (390)
Q Consensus 350 ~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i~ 380 (390)
.+.+-.-+.....-+...+.+.+.|+.+.+.
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred eccccccchhHHHHHHHHhhhhccccccccc
Confidence 7766543333333333344566666666654
No 11
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.62 E-value=1.5e-09 Score=103.04 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=19.3
Q ss_pred cCCcccEEEeeeEEECCCc--hHhHhhhcCCccceEEEecee
Q 045124 164 IFPSLRILHMDVIQLGVSG--HHRDLYRCCPVLDDLYVRGNI 203 (390)
Q Consensus 164 ~~~~Lk~L~L~~v~~~~~~--~l~~ll~~cp~Le~L~l~~c~ 203 (390)
.+++|++|+|+++.+.+.. .+...+..|+.|+.|+|.+|.
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 4455555555555544310 233344455555555555554
No 12
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.61 E-value=2.6e-08 Score=99.77 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=69.3
Q ss_pred ceeEEEEEEccCCChhHHHHHHHHHHhCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCC----CCc
Q 045124 87 VIRRFYLHCLQSYDAEVLRDWVVRGWTNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDP----DQR 162 (390)
Q Consensus 87 ~l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~----~~~ 162 (390)
.++.+.+.... .....+..... ..+++++|+|..+ .. .....++..+..|++|++|+|++|.+.+... ...
T Consensus 106 ~L~~L~L~~~~-~~~~~~~~l~~--~~~~L~~L~L~~~-~~-~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 106 WLEEIRLKRMV-VTDDCLELIAK--SFKNFKVLVLSSC-EG-FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp TCCEEEEESCB-CCHHHHHHHHH--HCTTCCEEEEESC-EE-EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred CCCeEEeeCcE-EcHHHHHHHHH--hCCCCcEEeCCCc-CC-CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 38888887643 22222222111 2468999999754 10 0111234434468999999999887543221 122
Q ss_pred ccCCcccEEEeeeEE--ECCCchHhHhhhcCCccceEEEece
Q 045124 163 VIFPSLRILHMDVIQ--LGVSGHHRDLYRCCPVLDDLYVRGN 202 (390)
Q Consensus 163 ~~~~~Lk~L~L~~v~--~~~~~~l~~ll~~cp~Le~L~l~~c 202 (390)
..+++|++|+|+++. +.. ..+..++.+||+|+.|+|.+|
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~-~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSF-SALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCH-HHHHHHHHHCTTCCEEECCTT
T ss_pred hcCCcCcEEEecccCCcCCH-HHHHHHHHhCCCCcEEecCCC
Confidence 367799999998875 332 667888888999999999887
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.59 E-value=2.8e-08 Score=92.57 Aligned_cols=57 Identities=11% Similarity=0.081 Sum_probs=32.0
Q ss_pred hccCCCccEEEEecccccccCCCCCCcccccccCCCccchhhcccceEEEEecCCchhHHHHHHHHHhcccccceEEEE
Q 045124 302 LPEVYNVNSLALSGCTVGEAKGEFPDCVQRWEERDVPADCLRNCLRGISVRGFGGKLHELQVIEYLLKNARVLRRMDIY 380 (390)
Q Consensus 302 L~~~p~L~~L~l~~~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i~ 380 (390)
+..+++|++|.++...... .. . -....+|+.+.+.+-.-+. + . -+...++|+.+.+.
T Consensus 217 ~~~~~~L~~L~l~~n~l~~-------~~-------~--~~~l~~L~~L~l~~n~l~~--~---~-~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITD-------LS-------P--LANLSQLTWLEIGTNQISD--I---N-AVKDLTKLKMLNVG 273 (347)
T ss_dssp GGGCTTCCEEECCSSCCCC-------CG-------G--GTTCTTCCEEECCSSCCCC--C---G-GGTTCTTCCEEECC
T ss_pred hhcCCcCCEEEccCCccCC-------Cc-------c--hhcCCCCCEEECCCCccCC--C---h-hHhcCCCcCEEEcc
Confidence 5667778887777664321 00 0 1123578888776543221 1 1 24677888888774
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.59 E-value=5e-08 Score=94.51 Aligned_cols=17 Identities=12% Similarity=0.172 Sum_probs=11.0
Q ss_pred hccCCCccEEEEecccc
Q 045124 302 LPEVYNVNSLALSGCTV 318 (390)
Q Consensus 302 L~~~p~L~~L~l~~~~~ 318 (390)
+..+++|+.|.|+....
T Consensus 262 ~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 262 FDGLASLVELNLAHNNL 278 (452)
T ss_dssp TTTCTTCCEEECCSSCC
T ss_pred hcCCCCCCEEECCCCcC
Confidence 45667777777766543
No 15
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.58 E-value=2.4e-08 Score=91.72 Aligned_cols=167 Identities=18% Similarity=0.188 Sum_probs=96.7
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.+++.|+|..+. ...+|+ +..+++|++|+|++|.+...+ ....+++|++|+|+++.+.+ +.. +..++.
T Consensus 63 ~~L~~L~L~~n~-----i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~---~~~-l~~l~~ 130 (308)
T 1h6u_A 63 NNLIGLELKDNQ-----ITDLAP-LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITD---VTP-LAGLSN 130 (308)
T ss_dssp TTCCEEECCSSC-----CCCCGG-GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTSCCCC---CGG-GTTCTT
T ss_pred CCCCEEEccCCc-----CCCChh-HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCCCCCCC---chh-hcCCCC
Confidence 566667665441 122333 555677777777777665554 45567777777777766653 222 566777
Q ss_pred cceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc-eeeeccCCccee
Q 045124 194 LDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA-QYILRNLNLLEK 272 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~-~~~~~~~~~L~~ 272 (390)
|+.|++.+|....... +. ..++|+.|.+ .+|..... .. .-..++|+.|+++++... ...+.++++|++
T Consensus 131 L~~L~l~~n~l~~~~~-l~-~l~~L~~L~l----~~n~l~~~----~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 199 (308)
T 1h6u_A 131 LQVLYLDLNQITNISP-LA-GLTNLQYLSI----GNAQVSDL----TP-LANLSKLTTLKADDNKISDISPLASLPNLIE 199 (308)
T ss_dssp CCEEECCSSCCCCCGG-GG-GCTTCCEEEC----CSSCCCCC----GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCE
T ss_pred CCEEECCCCccCcCcc-cc-CCCCccEEEc----cCCcCCCC----hh-hcCCCCCCEEECCCCccCcChhhcCCCCCCE
Confidence 7777777776543322 11 3466777777 55554322 11 224567777777664321 112566777777
Q ss_pred EEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEeccccc
Q 045124 273 ADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTVG 319 (390)
Q Consensus 273 l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~ 319 (390)
++++.+.. ..+.. +..+|+|+.|.++.....
T Consensus 200 L~L~~N~l---------------~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 200 VHLKNNQI---------------SDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp EECTTSCC---------------CBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred EEccCCcc---------------Ccccc-ccCCCCCCEEEccCCeee
Confidence 77743321 11112 578899999998887653
No 16
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.58 E-value=2.8e-08 Score=89.38 Aligned_cols=178 Identities=16% Similarity=0.107 Sum_probs=105.7
Q ss_pred CCeeEEEEEeccCCCCceecCCC-CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPS-NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~-~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
.++++|+|..+. ...+|+ .+..+++|++|+|+++.+..++...+..+++|++|+|.+..+.. .-...+..++
T Consensus 37 ~~l~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQSNK-----LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA--LPIGVFDQLV 109 (270)
T ss_dssp TTCSEEECCSSC-----CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC--CCTTTTTTCS
T ss_pred CCCCEEECcCCC-----CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc--CCHhHccccc
Confidence 456777775441 123443 45567888888888887766664445678888888888776653 2234566788
Q ss_pred ccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccce---eeeccCCc
Q 045124 193 VLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQ---YILRNLNL 269 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~---~~~~~~~~ 269 (390)
.|+.|++.++.........--..++|+.|.+ .++..... .....-..++|+.|++++..... ..+.++++
T Consensus 110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L----s~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSL----GYNELQSL---PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182 (270)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEEC----CSSCCCCC---CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred CCCEEECCCCccCeeCHHHhCcCcCCCEEEC----CCCcCCcc---CHhHccCCcccceeEecCCcCcEeChhHhccCCC
Confidence 8888888887653322100013467888888 55554321 00111245778888887753211 23566788
Q ss_pred ceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEeccccc
Q 045124 270 LEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTVG 319 (390)
Q Consensus 270 L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~ 319 (390)
|+.++++.+.....+ ...+..+++|+.|.|.+.+..
T Consensus 183 L~~L~L~~N~l~~~~--------------~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVP--------------EGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCCSCCC--------------TTTTTTCTTCCEEECCSSCBC
T ss_pred cCEEECCCCcCCcCC--------------HHHhccccCCCEEEecCCCee
Confidence 888877544211111 123556788888888776553
No 17
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.55 E-value=4.1e-08 Score=90.14 Aligned_cols=166 Identities=12% Similarity=0.044 Sum_probs=119.7
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.++++|++..+. ...+| .+..+++|+.|+|++|.+...+ ....+++|++|+|++..+.+ +. -+..++.
T Consensus 41 ~~L~~L~l~~~~-----i~~l~-~~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~L~~n~l~~---~~-~~~~l~~ 108 (308)
T 1h6u_A 41 DGITTLSAFGTG-----VTTIE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN---VS-AIAGLQS 108 (308)
T ss_dssp HTCCEEECTTSC-----CCCCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC---CG-GGTTCTT
T ss_pred CCcCEEEeeCCC-----ccCch-hhhccCCCCEEEccCCcCCCCh--hHccCCCCCEEEccCCcCCC---ch-hhcCCCC
Confidence 578888885441 12344 4677899999999999887777 47789999999999998875 22 3678999
Q ss_pred cceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc-eeeeccCCccee
Q 045124 194 LDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA-QYILRNLNLLEK 272 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~-~~~~~~~~~L~~ 272 (390)
|+.|++.+|....... + -..++|+.|.+ .++..... .. .-..++|+.|+++++... ...+.++++|+.
T Consensus 109 L~~L~l~~n~l~~~~~-l-~~l~~L~~L~l----~~n~l~~~----~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 177 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTP-L-AGLSNLQVLYL----DLNQITNI----SP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177 (308)
T ss_dssp CCEEECTTSCCCCCGG-G-TTCTTCCEEEC----CSSCCCCC----GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred CCEEECCCCCCCCchh-h-cCCCCCCEEEC----CCCccCcC----cc-ccCCCCccEEEccCCcCCCChhhcCCCCCCE
Confidence 9999999998755443 2 14588999999 67765432 11 226688999999886421 122778999999
Q ss_pred EEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccc
Q 045124 273 ADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 273 l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
++++.+... .+.. +..+|+|+.|.++....
T Consensus 178 L~l~~n~l~---------------~~~~-l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 178 LKADDNKIS---------------DISP-LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp EECCSSCCC---------------CCGG-GGGCTTCCEEECTTSCC
T ss_pred EECCCCccC---------------cChh-hcCCCCCCEEEccCCcc
Confidence 998644311 1111 67899999999988754
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.54 E-value=7.8e-08 Score=93.53 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=45.3
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
..+++|++..+. ...+++ +..+++|++|+|++|.+...+ ....+++|++|+|+++.+.+.. . +..++.
T Consensus 90 ~~L~~L~l~~n~-----l~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~---~-~~~l~~ 157 (466)
T 1o6v_A 90 TKLVDILMNNNQ-----IADITP-LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS---A-LSGLTS 157 (466)
T ss_dssp TTCCEEECCSSC-----CCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCG---G-GTTCTT
T ss_pred ccCCEEECCCCc-----cccChh-hcCCCCCCEEECCCCCCCCCh--HHcCCCCCCEEECCCCccCCCh---h-hccCCc
Confidence 566777775441 122333 556777777777777665555 3567777888888877776422 1 445555
Q ss_pred cceEEEe
Q 045124 194 LDDLYVR 200 (390)
Q Consensus 194 Le~L~l~ 200 (390)
|+.|.+.
T Consensus 158 L~~L~l~ 164 (466)
T 1o6v_A 158 LQQLSFG 164 (466)
T ss_dssp CSEEEEE
T ss_pred ccEeecC
Confidence 5555554
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.54 E-value=1e-07 Score=91.98 Aligned_cols=152 Identities=14% Similarity=0.066 Sum_probs=70.0
Q ss_pred ccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEE----EE
Q 045124 139 CTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFD----VV 214 (390)
Q Consensus 139 ~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~----i~ 214 (390)
..+++|++|+|++|.+...++.....+++|++|+|++..+.. .-...+..++.|+.|+|.+|.. +.. +. -.
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~l~~~~~--l~~-i~~~~~~~ 183 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES--IPSYAFNRIPSLRRLDLGELKR--LSY-ISEGAFEG 183 (440)
T ss_dssp TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE--ECTTTTTTCTTCCEEECCCCTT--CCE-ECTTTTTT
T ss_pred cCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc--cCHHHhhhCcccCEeCCCCCCC--cce-eCcchhhc
Confidence 345555566655555544443334455566666665554432 1122344556666666655432 111 00 02
Q ss_pred ccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc---eeeeccCCcceeEEeeeeeeeecCCCCccCC
Q 045124 215 STSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA---QYILRNLNLLEKADIGIGGVFMCPRGGGFDF 291 (390)
Q Consensus 215 ~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~ 291 (390)
.++|+.|.+ .++..... ......++|+.|+++++... ...+.++++|+++++..+.....
T Consensus 184 l~~L~~L~L----~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------- 246 (440)
T 3zyj_A 184 LSNLRYLNL----AMCNLREI-----PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI-------- 246 (440)
T ss_dssp CSSCCEEEC----TTSCCSSC-----CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE--------
T ss_pred ccccCeecC----CCCcCccc-----cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE--------
Confidence 345666666 44443321 11123455666666554321 12344556666665533221100
Q ss_pred CccHHHHHhhhccCCCccEEEEecccc
Q 045124 292 DHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 292 ~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
....+..+++|+.|.|+....
T Consensus 247 ------~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 247 ------ERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp ------CTTSSTTCTTCCEEECTTSCC
T ss_pred ------ChhhhcCCCCCCEEECCCCCC
Confidence 012244567777777766543
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.54 E-value=1.9e-08 Score=91.16 Aligned_cols=66 Identities=27% Similarity=0.290 Sum_probs=30.3
Q ss_pred CCccCCcccEEEEcCee-ecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceec
Q 045124 137 NLCTSTALEVLKLQGNI-TLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 137 ~l~~c~~L~~L~L~~~~-~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
.+..+++|++|+|+++. +...++.....+++|++|+|.+..+.. .....+..++.|++|++.+|..
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l 141 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE--LGPGLFRGLAALQYLYLQDNAL 141 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECCSSCC
T ss_pred hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE--ECHhHhhCCcCCCEEECCCCcc
Confidence 34444555555555553 333322234445555555555544432 1123344455555555555543
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.53 E-value=4.4e-08 Score=95.51 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=34.3
Q ss_pred CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceec
Q 045124 137 NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 137 ~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
.+..+++|++|+|+++.+...++..+..+++|++|+|++..+.. .-...+.+++.|+.|+|.+|..
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i 116 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL--IPLGVFTGLSNLTKLDISENKI 116 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS--CCTTSSTTCTTCCEEECTTSCC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc--cCcccccCCCCCCEEECCCCcc
Confidence 44455666666666655443333344556666666666554432 1122344566666666665543
No 22
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.50 E-value=2.9e-08 Score=89.46 Aligned_cols=174 Identities=15% Similarity=0.070 Sum_probs=95.8
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
..+++|.+... ...-.+.+..+++|++|+|++|.+...+ ....+++|++|+|+++.+.+ .....+..++.
T Consensus 41 ~~L~~L~l~~~------~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~ 110 (272)
T 3rfs_A 41 NSIDQIIANNS------DIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQS--LPNGVFDKLTN 110 (272)
T ss_dssp TTCCEEECTTS------CCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCC--CCTTTTTTCTT
T ss_pred cceeeeeeCCC------CcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCc--cChhHhcCCcC
Confidence 45666666433 1122234556777777777777665544 55667777777777766653 22344566777
Q ss_pred cceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccce---eeeccCCcc
Q 045124 194 LDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQ---YILRNLNLL 270 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~---~~~~~~~~L 270 (390)
|++|++.+|.........--..++|+.|.+ .+|.+... .....-..++|+.|+++++.... ..+.++++|
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L----~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNL----AHNQLQSL---PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEEC----CSSCCCCC---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEEC----CCCccCcc---CHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 777777777653221100012466777777 55554321 00111245677777777653211 124567777
Q ss_pred eeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccc
Q 045124 271 EKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 271 ~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
+.+++..+..... ....+..+++|+.|.+.....
T Consensus 184 ~~L~L~~N~l~~~--------------~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 184 KDLRLYQNQLKSV--------------PDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CEEECCSSCCSCC--------------CTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCcCCcc--------------CHHHHhCCcCCCEEEccCCCc
Confidence 7777754321110 112355677788887776644
No 23
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.48 E-value=4.8e-08 Score=88.93 Aligned_cols=166 Identities=15% Similarity=0.101 Sum_probs=107.2
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
..++.|++..+. ...+| .+..+++|++|+|++|.+...+ ....+++|+.|+|++..+.+ +.. +..++.
T Consensus 46 ~~L~~L~l~~~~-----i~~~~-~~~~l~~L~~L~L~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~---~~~-l~~l~~ 113 (291)
T 1h6t_A 46 NSIDQIIANNSD-----IKSVQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD---LSS-LKDLKK 113 (291)
T ss_dssp HTCCEEECTTSC-----CCCCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC---GGG-GTTCTT
T ss_pred CcccEEEccCCC-----cccCh-hHhcCCCCCEEEccCCccCCCc--ccccCCCCCEEECCCCcCCC---Chh-hccCCC
Confidence 456777775431 12233 3566788888888888776666 36678888888888877754 333 677888
Q ss_pred cceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc-eeeeccCCccee
Q 045124 194 LDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA-QYILRNLNLLEK 272 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~-~~~~~~~~~L~~ 272 (390)
|+.|++.+|....+.. +. ..++|+.|.+ .+|..... ...-..++|+.|+++++... ...+.++++|+.
T Consensus 114 L~~L~L~~n~i~~~~~-l~-~l~~L~~L~l----~~n~l~~~-----~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~ 182 (291)
T 1h6t_A 114 LKSLSLEHNGISDING-LV-HLPQLESLYL----GNNKITDI-----TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182 (291)
T ss_dssp CCEEECTTSCCCCCGG-GG-GCTTCCEEEC----CSSCCCCC-----GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCE
T ss_pred CCEEECCCCcCCCChh-hc-CCCCCCEEEc----cCCcCCcc-----hhhccCCCCCEEEccCCccccchhhcCCCccCE
Confidence 8888888887654433 21 3577888888 66655421 11225678888888775321 112677888888
Q ss_pred EEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccc
Q 045124 273 ADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 273 l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
++++.+.. ..+. -+..+++|+.|.+++...
T Consensus 183 L~L~~N~i---------------~~l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 183 LYLSKNHI---------------SDLR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EECCSSCC---------------CBCG-GGTTCTTCSEEEEEEEEE
T ss_pred EECCCCcC---------------CCCh-hhccCCCCCEEECcCCcc
Confidence 88854321 1111 266788889888887654
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.47 E-value=2.3e-08 Score=90.68 Aligned_cols=177 Identities=14% Similarity=0.068 Sum_probs=108.9
Q ss_pred CCeeEEEEEeccCCCCceecCC-CCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEE-ECCCchHhHhhhcC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLP-SNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQ-LGVSGHHRDLYRCC 191 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp-~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~-~~~~~~l~~ll~~c 191 (390)
..+++|+|.... ...+| ..+..+++|++|+|+++.+...++.....+++|++|+|++.. +.. .....+..+
T Consensus 32 ~~l~~L~l~~n~-----i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~--~~~~~~~~l 104 (285)
T 1ozn_A 32 AASQRIFLHGNR-----ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS--VDPATFHGL 104 (285)
T ss_dssp TTCSEEECTTSC-----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC--CCTTTTTTC
T ss_pred CCceEEEeeCCc-----CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc--cCHHHhcCC
Confidence 567888875441 12334 345668899999998887655544456778899999998875 432 123456778
Q ss_pred CccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccccee---eeccCC
Q 045124 192 PVLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQY---ILRNLN 268 (390)
Q Consensus 192 p~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~---~~~~~~ 268 (390)
+.|++|++.+|.........--..++|+.|.+ .++..... .....-..++|+.|++++...... .+.+++
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l----~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYL----QDNALQAL---PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC----CSSCCCCC---CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEEC----CCCccccc---CHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence 99999999888763321100013578899998 56654321 001112467888888887543222 356788
Q ss_pred cceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccc
Q 045124 269 LLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 269 ~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
+|+++++..+..... ....+..+|+|+.|.++....
T Consensus 178 ~L~~L~l~~n~l~~~--------------~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHV--------------HPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp TCCEEECCSSCCCEE--------------CTTTTTTCTTCCEEECCSSCC
T ss_pred ccCEEECCCCccccc--------------CHhHccCcccccEeeCCCCcC
Confidence 888888854431110 122355678888888877643
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.47 E-value=3e-07 Score=87.15 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=29.2
Q ss_pred CccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEecee
Q 045124 138 LCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNI 203 (390)
Q Consensus 138 l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~ 203 (390)
+..+++|++|+|+++.+...++.....+++|++|+|++..+.. .-..++..++.|++|++.+|.
T Consensus 89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~ 152 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNN 152 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc--CCHHHhcCCCCCcEEECCCCc
Confidence 3344555555555554444433233445555555555544432 111223445555555555543
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.46 E-value=9.9e-08 Score=92.82 Aligned_cols=187 Identities=17% Similarity=0.091 Sum_probs=87.2
Q ss_pred CccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccc
Q 045124 138 LCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTS 217 (390)
Q Consensus 138 l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~ 217 (390)
+..+++|++|++++|.+...+ ....+++|++|+|+++.+.+ +.. +..++.|+.|++.+|....... + -..++
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~---~~~-~~~l~~L~~L~l~~n~l~~~~~-~-~~l~~ 157 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITD---IDP-LKNLTNLNRLELSSNTISDISA-L-SGLTS 157 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC---CGG-GTTCTTCSEEEEEEEEECCCGG-G-TTCTT
T ss_pred hhccccCCEEECCCCccccCh--hhcCCCCCCEEECCCCCCCC---ChH-HcCCCCCCEEECCCCccCCChh-h-ccCCc
Confidence 444555666666555544444 24455556666665554443 111 4555666666665555433222 1 12345
Q ss_pred eeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc-ceeeeccCCcceeEEeeeeeeeecCCCCccCCCccHH
Q 045124 218 VRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF-AQYILRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSD 296 (390)
Q Consensus 218 L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~ 296 (390)
|+.|.+ .++.... .. .-..++|+.|+++++.. ....+.++++|+.+++..+.. .
T Consensus 158 L~~L~l----~~~~~~~-----~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l---------------~ 212 (466)
T 1o6v_A 158 LQQLSF----GNQVTDL-----KP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI---------------S 212 (466)
T ss_dssp CSEEEE----EESCCCC-----GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC---------------C
T ss_pred ccEeec----CCcccCc-----hh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcc---------------c
Confidence 555555 2211100 01 11345566666555321 112244555666555533210 0
Q ss_pred HHHhhhccCCCccEEEEecccccccCCCCCCcccccccCCCccchhhcccceEEEEecCCchhHHHHHHHHHhcccccce
Q 045124 297 ERISFLPEVYNVNSLALSGCTVGEAKGEFPDCVQRWEERDVPADCLRNCLRGISVRGFGGKLHELQVIEYLLKNARVLRR 376 (390)
Q Consensus 297 ~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~ 376 (390)
.+.. +..+++|+.|.++...... . ... ....+|+.+.+.+-.-.... . +.+.+.|+.
T Consensus 213 ~~~~-~~~l~~L~~L~l~~n~l~~-------~-------~~l--~~l~~L~~L~l~~n~l~~~~-~-----~~~l~~L~~ 269 (466)
T 1o6v_A 213 DITP-LGILTNLDELSLNGNQLKD-------I-------GTL--ASLTNLTDLDLANNQISNLA-P-----LSGLTKLTE 269 (466)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCC-------C-------GGG--GGCTTCSEEECCSSCCCCCG-G-----GTTCTTCSE
T ss_pred cccc-ccccCCCCEEECCCCCccc-------c-------hhh--hcCCCCCEEECCCCccccch-h-----hhcCCCCCE
Confidence 0001 3456677777766653311 0 001 12357888877654321111 0 577888888
Q ss_pred EEEE
Q 045124 377 MDIY 380 (390)
Q Consensus 377 l~i~ 380 (390)
+.+.
T Consensus 270 L~l~ 273 (466)
T 1o6v_A 270 LKLG 273 (466)
T ss_dssp EECC
T ss_pred EECC
Confidence 8774
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.44 E-value=4e-08 Score=93.26 Aligned_cols=152 Identities=18% Similarity=0.159 Sum_probs=103.6
Q ss_pred hCCeeEEEEEeccCCCCceecCCCCCc-cCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcC
Q 045124 113 TNNVVEVDIRVDNINEDNFLDLPSNLC-TSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCC 191 (390)
Q Consensus 113 ~~~v~~L~L~~~~~~~~~~~~lp~~l~-~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~c 191 (390)
-.+++.+++... ....+|..++ .+++|++|+|.++.+...++.....+++|++|+|++..+.. .....+..+
T Consensus 44 l~~l~~l~l~~~-----~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l 116 (390)
T 3o6n_A 44 LNNQKIVTFKNS-----TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY--LPPHVFQNV 116 (390)
T ss_dssp GCCCSEEEEESC-----EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTC
T ss_pred cCCceEEEecCC-----chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc--CCHHHhcCC
Confidence 367788888654 2345676654 47899999999988766654467789999999999887763 234456789
Q ss_pred CccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccceeeeccCCcce
Q 045124 192 PVLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQYILRNLNLLE 271 (390)
Q Consensus 192 p~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~~~~~~~L~ 271 (390)
+.|+.|++.+|....+...+--..++|+.|.+ .++.+... .....-..++|++|++++.......+..+++|+
T Consensus 117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L----~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~ 189 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM----SNNNLERI---EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 189 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC----CSSCCCBC---CTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCS
T ss_pred CCCCEEECCCCccCcCCHHHhcCCCCCcEEEC----CCCccCcc---ChhhccCCCCCCEEECCCCcCCccccccccccc
Confidence 99999999998764332200013578999999 66655321 011122568899999988654445567788888
Q ss_pred eEEeeee
Q 045124 272 KADIGIG 278 (390)
Q Consensus 272 ~l~l~~~ 278 (390)
.+++...
T Consensus 190 ~L~l~~n 196 (390)
T 3o6n_A 190 HANVSYN 196 (390)
T ss_dssp EEECCSS
T ss_pred eeecccc
Confidence 8777543
No 28
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.43 E-value=8.5e-08 Score=85.95 Aligned_cols=146 Identities=19% Similarity=0.175 Sum_probs=92.6
Q ss_pred ccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccce
Q 045124 139 CTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSV 218 (390)
Q Consensus 139 ~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L 218 (390)
..+++|++|++++|.+..++ ....+++|++|+|++..+.+ +.. +..++.|+.|++.+|....+.. +. .++|
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~---~~~-l~~l~~L~~L~L~~N~l~~l~~-~~--~~~L 108 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISD---LSP-LKDLTKLEELSVNRNRLKNLNG-IP--SACL 108 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC---CGG-GTTCSSCCEEECCSSCCSCCTT-CC--CSSC
T ss_pred hhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCC---Chh-hccCCCCCEEECCCCccCCcCc-cc--cCcc
Confidence 44677788888877766665 56677888888888777654 222 6678888888888877655444 22 2778
Q ss_pred eEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc-eeeeccCCcceeEEeeeeeeeecCCCCccCCCccHHH
Q 045124 219 RNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA-QYILRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDE 297 (390)
Q Consensus 219 ~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~ 297 (390)
+.|.+ .+|..... . ..-..++|+.|+++++... ...+..+++|+.++++.+.. ..
T Consensus 109 ~~L~L----~~N~l~~~----~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i---------------~~ 164 (263)
T 1xeu_A 109 SRLFL----DNNELRDT----D-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEI---------------TN 164 (263)
T ss_dssp CEEEC----CSSCCSBS----G-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCC---------------CB
T ss_pred cEEEc----cCCccCCC----h-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcC---------------cc
Confidence 88888 56655432 1 1225677888887765321 22466777888877743321 11
Q ss_pred HHhhhccCCCccEEEEecccc
Q 045124 298 RISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 298 l~~lL~~~p~L~~L~l~~~~~ 318 (390)
+ ..+..+++|+.|.+++...
T Consensus 165 ~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 165 T-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp C-TTSTTCCCCCEEEEEEEEE
T ss_pred h-HHhccCCCCCEEeCCCCcc
Confidence 1 3466778888888877654
No 29
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.43 E-value=3.8e-08 Score=98.73 Aligned_cols=123 Identities=17% Similarity=0.093 Sum_probs=64.9
Q ss_pred CccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccc
Q 045124 138 LCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTS 217 (390)
Q Consensus 138 l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~ 217 (390)
+..+++|+.|+|++|.+..++ ....+++|+.|+|+++.+.+ +. -+..++.|+.|+|.+|....+.. + ...++
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~---l~-~l~~l~~L~~L~Ls~N~l~~l~~-l-~~l~~ 132 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENKIKD---LS-SLKDLKKLKSLSLEHNGISDING-L-VHLPQ 132 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCC---CT-TSTTCTTCCEEECTTSCCCCCGG-G-GGCTT
T ss_pred HccCCCCCEEEeeCCCCCCCh--hhccCCCCCEEECcCCCCCC---Ch-hhccCCCCCEEEecCCCCCCCcc-c-cCCCc
Confidence 455666666666666655554 35566666666666665543 11 24556666666666665543322 1 13456
Q ss_pred eeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc-ceeeeccCCcceeEEeee
Q 045124 218 VRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF-AQYILRNLNLLEKADIGI 277 (390)
Q Consensus 218 L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~-~~~~~~~~~~L~~l~l~~ 277 (390)
|+.|.+ .+|..... ...-..++|+.|+++++.. ....+.++++|+.++++.
T Consensus 133 L~~L~L----s~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 133 LESLYL----GNNKITDI-----TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK 184 (605)
T ss_dssp CSEEEC----CSSCCCCC-----GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred cCEEEC----CCCccCCc-----hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcC
Confidence 666666 45544321 1111445666666655421 111255666666666643
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.42 E-value=3.7e-08 Score=91.82 Aligned_cols=169 Identities=17% Similarity=0.130 Sum_probs=120.7
Q ss_pred hCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 113 TNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 113 ~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
..++++|++..+.. ..++. +..+++|++|++++|.+...+ ....+++|+.|++.+..+.+... +..++
T Consensus 154 l~~L~~L~l~~~~~-----~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~----~~~~~ 221 (347)
T 4fmz_A 154 MTGLNYLTVTESKV-----KDVTP-IANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDITP----VANMT 221 (347)
T ss_dssp CTTCCEEECCSSCC-----CCCGG-GGGCTTCSEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG----GGGCT
T ss_pred CCCCcEEEecCCCc-----CCchh-hccCCCCCEEEccCCcccccc--cccCCCccceeecccCCCCCCch----hhcCC
Confidence 35788998865521 12222 667899999999999877766 47789999999999987765222 77899
Q ss_pred ccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc-eeeeccCCcce
Q 045124 193 VLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA-QYILRNLNLLE 271 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~-~~~~~~~~~L~ 271 (390)
.|++|++.+|....... + ...++|+.|.+ .+|..... ......|+|++|+++++... ...+..+++|+
T Consensus 222 ~L~~L~l~~n~l~~~~~-~-~~l~~L~~L~l----~~n~l~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 290 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP-L-ANLSQLTWLEI----GTNQISDI-----NAVKDLTKLKMLNVGSNQISDISVLNNLSQLN 290 (347)
T ss_dssp TCCEEECCSSCCCCCGG-G-TTCTTCCEEEC----CSSCCCCC-----GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred cCCEEEccCCccCCCcc-h-hcCCCCCEEEC----CCCccCCC-----hhHhcCCCcCEEEccCCccCCChhhcCCCCCC
Confidence 99999999998754432 1 14588999999 67765432 11225689999999886432 23467889999
Q ss_pred eEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccc
Q 045124 272 KADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 272 ~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
+++++.+... ......+..+|+|+.|.+++...
T Consensus 291 ~L~L~~n~l~--------------~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 291 SLFLNNNQLG--------------NEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp EEECCSSCCC--------------GGGHHHHHTCTTCSEEECCSSSC
T ss_pred EEECcCCcCC--------------CcChhHhhccccCCEEEccCCcc
Confidence 9998654311 12334567899999999999855
No 31
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.41 E-value=5.9e-08 Score=82.93 Aligned_cols=63 Identities=8% Similarity=-0.040 Sum_probs=32.7
Q ss_pred CccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceec
Q 045124 138 LCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 138 l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
+..+++|++|++++|.....+ ....+++|++|+|+++.+.+ .....+..+|.|+.|++.+|..
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTS--DKIPNLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBG--GGSCCCTTCTTCCEEECCSSBC
T ss_pred HhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCc--ccChhhcCCCCCCEEEecCCcc
Confidence 445566666666666443333 34455666666666554432 1122244556666666665544
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.41 E-value=4.3e-08 Score=90.21 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=88.3
Q ss_pred CCeeEEEEEe-ccCCCCceecCCCCCccCCcccEEEEcCeeec-CCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcC
Q 045124 114 NNVVEVDIRV-DNINEDNFLDLPSNLCTSTALEVLKLQGNITL-DPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCC 191 (390)
Q Consensus 114 ~~v~~L~L~~-~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~-~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~c 191 (390)
..++.|+|.. . .-...+|..+..+++|++|+|+++.+. ..| .....+++|++|+|++..+.+ .+...+..+
T Consensus 76 ~~L~~L~L~~~n----~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l 148 (313)
T 1ogq_A 76 PYLNFLYIGGIN----NLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSG--TLPPSISSL 148 (313)
T ss_dssp TTCSEEEEEEET----TEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTCCEEECCSSEEES--CCCGGGGGC
T ss_pred CCCCeeeCCCCC----cccccCChhHhcCCCCCEEECcCCeeCCcCC-HHHhCCCCCCEEeCCCCccCC--cCChHHhcC
Confidence 6788888873 3 223356777777888888888888765 333 256678888888888877763 344556678
Q ss_pred CccceEEEeceecC-CCCeeEEEEcc-ceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc---ceeeecc
Q 045124 192 PVLDDLYVRGNIAE-PLPFQFDVVST-SVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF---AQYILRN 266 (390)
Q Consensus 192 p~Le~L~l~~c~~~-~~~~~l~i~~~-~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~---~~~~~~~ 266 (390)
+.|++|++.+|... .....+. ..+ +|+.|.+ .++..... ....+...+|+.|+++++.. ....+.+
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L----~~N~l~~~----~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~ 219 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTI----SRNRLTGK----IPPTFANLNLAFVDLSRNMLEGDASVLFGS 219 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGG-CCCTTCCEEEC----CSSEEEEE----CCGGGGGCCCSEEECCSSEEEECCGGGCCT
T ss_pred CCCCeEECcCCcccCcCCHHHh-hhhhcCcEEEC----cCCeeecc----CChHHhCCcccEEECcCCcccCcCCHHHhc
Confidence 88888888887642 1110010 223 7888888 45443210 00011112377777766432 1233566
Q ss_pred CCcceeEEeeee
Q 045124 267 LNLLEKADIGIG 278 (390)
Q Consensus 267 ~~~L~~l~l~~~ 278 (390)
+++|+.+++..+
T Consensus 220 l~~L~~L~L~~N 231 (313)
T 1ogq_A 220 DKNTQKIHLAKN 231 (313)
T ss_dssp TSCCSEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 777777777543
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.40 E-value=6.8e-08 Score=89.46 Aligned_cols=82 Identities=12% Similarity=0.036 Sum_probs=47.2
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.++++|+|..+. -....|..+..+++|++|+|+++.+..+|. ..+++|++|+|++..+.. .....+..++.
T Consensus 76 ~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~---~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~ 146 (330)
T 1xku_A 76 KNLHTLILINNK----ISKISPGAFAPLVKLERLYLSKNQLKELPE---KMPKTLQELRVHENEITK--VRKSVFNGLNQ 146 (330)
T ss_dssp TTCCEEECCSSC----CCCBCTTTTTTCTTCCEEECCSSCCSBCCS---SCCTTCCEEECCSSCCCB--BCHHHHTTCTT
T ss_pred CCCCEEECCCCc----CCeeCHHHhcCCCCCCEEECCCCcCCccCh---hhcccccEEECCCCcccc--cCHhHhcCCcc
Confidence 567777775441 112225556667777777777776655542 223667777776665542 22334556666
Q ss_pred cceEEEeceec
Q 045124 194 LDDLYVRGNIA 204 (390)
Q Consensus 194 Le~L~l~~c~~ 204 (390)
|+.|++.+|..
T Consensus 147 L~~L~l~~n~l 157 (330)
T 1xku_A 147 MIVVELGTNPL 157 (330)
T ss_dssp CCEEECCSSCC
T ss_pred ccEEECCCCcC
Confidence 66666666543
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.40 E-value=9.6e-08 Score=92.20 Aligned_cols=176 Identities=13% Similarity=0.102 Sum_probs=115.5
Q ss_pred CCeeEEEEEeccCCCCceecCCC-CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPS-NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~-~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
.++++|+|..+. ...+|. .+..+++|+.|+|+++.+...++..+..+++|++|+|.++.... ..-...+.+++
T Consensus 112 ~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~-~i~~~~~~~l~ 185 (440)
T 3zyj_A 112 ANLNTLELFDNR-----LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLS 185 (440)
T ss_dssp SSCCEEECCSSC-----CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-EECTTTTTTCS
T ss_pred ccCCEEECCCCc-----CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc-eeCcchhhccc
Confidence 578888886541 235555 45568999999999998766665567789999999999754332 22233577899
Q ss_pred ccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc---eeeeccCCc
Q 045124 193 VLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA---QYILRNLNL 269 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~---~~~~~~~~~ 269 (390)
.|+.|+|.+|....+.. + ...++|+.|.+ .++.+... .....-..++|+.|.++++... ...+.++++
T Consensus 186 ~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~L----s~N~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIPN-L-TPLIKLDELDL----SGNHLSAI---RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp SCCEEECTTSCCSSCCC-C-TTCSSCCEEEC----TTSCCCEE---CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred ccCeecCCCCcCccccc-c-CCCcccCEEEC----CCCccCcc---ChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 99999999997754443 2 14578999999 66654321 0011125678899988875432 224677888
Q ss_pred ceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccc
Q 045124 270 LEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 270 L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
|++++++.+.....+ ...+..+++|+.|.|++.+.
T Consensus 257 L~~L~L~~N~l~~~~--------------~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 257 LVEINLAHNNLTLLP--------------HDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCEEECTTSCCCCCC--------------TTTTSSCTTCCEEECCSSCE
T ss_pred CCEEECCCCCCCccC--------------hhHhccccCCCEEEcCCCCc
Confidence 998888644311111 12345677788887776654
No 35
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.37 E-value=1.1e-07 Score=85.68 Aligned_cols=131 Identities=16% Similarity=0.126 Sum_probs=74.0
Q ss_pred CCeeEEEEEeccCCCCceecCCC-CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPS-NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~-~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
.++++|++..+. ...+++ .+..+++|++|+|++|.+...++.....+++|++|+|++..+.. .....+..++
T Consensus 28 ~~l~~L~ls~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNP-----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLS 100 (276)
T ss_dssp TTCCEEECTTCC-----CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCT
T ss_pred CCccEEECCCCc-----ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc--cChhhhcCCc
Confidence 456777764431 123333 45567778888887776655543345667778888887766543 1223456677
Q ss_pred ccceEEEeceecCCCCeeEEE-EccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecc
Q 045124 193 VLDDLYVRGNIAEPLPFQFDV-VSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENF 258 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 258 (390)
.|+.|++.+|....... ..+ ..++|+.|.+ .++.+... ......-..++|+.|+++++.
T Consensus 101 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l----~~n~l~~~--~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 101 SLQKLVAVETNLASLEN-FPIGHLKTLKELNV----AHNLIQSF--KLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp TCCEEECTTSCCCCSTT-CCCTTCTTCCEEEC----CSSCCCCC--CCCGGGGGCTTCCEEECCSSC
T ss_pred cccEEECCCCCccccCc-hhcccCCCCCEEEC----cCCcccee--cCchhhccCCCCCEEECCCCC
Confidence 88888877776533322 112 3467777777 55544321 000111234677777776653
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.37 E-value=4.9e-08 Score=89.86 Aligned_cols=152 Identities=17% Similarity=0.186 Sum_probs=81.9
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcC-eeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQG-NITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~-~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
..|++|+|..... .....+|..+..+++|++|+|++ +.+....+.....+++|++|+|++..+.+ .+...+..++
T Consensus 50 ~~l~~L~L~~~~l--~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNL--PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--AIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCC--SSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--ECCGGGGGCT
T ss_pred ceEEEEECCCCCc--cCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--cCCHHHhCCC
Confidence 4567777765411 11225677777777788888874 44432222245677788888887776652 3344456677
Q ss_pred ccceEEEeceecCC-CCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecC-ccceEEeeecccc---eeeeccC
Q 045124 193 VLDDLYVRGNIAEP-LPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQ-NLVCLELRENFFA---QYILRNL 267 (390)
Q Consensus 193 ~Le~L~l~~c~~~~-~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap-~L~~L~~~~~~~~---~~~~~~~ 267 (390)
.|++|++.+|.... ....+ -..++|+.|.+ .++.+... .+..+ ...+ +|+.|++++.... ...+.++
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L----~~N~l~~~--~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSI-SSLPNLVGITF----DGNRISGA--IPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp TCCEEECCSSEEESCCCGGG-GGCTTCCEEEC----CSSCCEEE--CCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred CCCEEeCCCCccCCcCChHH-hcCCCCCeEEC----cCCcccCc--CCHHH-hhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 88888887776531 11101 13467777777 55543210 00011 1223 6777777664321 1233444
Q ss_pred CcceeEEeeee
Q 045124 268 NLLEKADIGIG 278 (390)
Q Consensus 268 ~~L~~l~l~~~ 278 (390)
. |+.++++.+
T Consensus 198 ~-L~~L~Ls~N 207 (313)
T 1ogq_A 198 N-LAFVDLSRN 207 (313)
T ss_dssp C-CSEEECCSS
T ss_pred c-ccEEECcCC
Confidence 4 777766543
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.37 E-value=1.3e-07 Score=91.56 Aligned_cols=145 Identities=15% Similarity=0.052 Sum_probs=77.8
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.++++|+|..+.. ....|..+..+++|+.|+|+++.+...++.....+++|++|+|++..+.. .-...+..+|.
T Consensus 99 ~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~ 172 (452)
T 3zyi_A 99 HHLEVLQLGRNSI----RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES--IPSYAFNRVPS 172 (452)
T ss_dssp TTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE--ECTTTTTTCTT
T ss_pred CCCCEEECCCCcc----CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce--eCHhHHhcCCc
Confidence 5677888765411 12223445567788888888877666664445667888888888776642 12234556777
Q ss_pred cceEEEeceecCCCCeeEEE----EccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc---eeeecc
Q 045124 194 LDDLYVRGNIAEPLPFQFDV----VSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA---QYILRN 266 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~~l~i----~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~---~~~~~~ 266 (390)
|+.|++.+|.. +.. +.. ..++|+.|.+ .++..... .-....++|+.|+++++... ...+.+
T Consensus 173 L~~L~l~~~~~--l~~-i~~~~~~~l~~L~~L~L----~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 240 (452)
T 3zyi_A 173 LMRLDLGELKK--LEY-ISEGAFEGLFNLKYLNL----GMCNIKDM-----PNLTPLVGLEELEMSGNHFPEIRPGSFHG 240 (452)
T ss_dssp CCEEECCCCTT--CCE-ECTTTTTTCTTCCEEEC----TTSCCSSC-----CCCTTCTTCCEEECTTSCCSEECGGGGTT
T ss_pred ccEEeCCCCCC--ccc-cChhhccCCCCCCEEEC----CCCccccc-----ccccccccccEEECcCCcCcccCcccccC
Confidence 77777776543 211 110 2355666666 45544321 11123445555555553221 112344
Q ss_pred CCcceeEEee
Q 045124 267 LNLLEKADIG 276 (390)
Q Consensus 267 ~~~L~~l~l~ 276 (390)
+++|+++++.
T Consensus 241 l~~L~~L~L~ 250 (452)
T 3zyi_A 241 LSSLKKLWVM 250 (452)
T ss_dssp CTTCCEEECT
T ss_pred ccCCCEEEeC
Confidence 4455544443
No 38
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.37 E-value=1.4e-07 Score=85.92 Aligned_cols=146 Identities=14% Similarity=0.133 Sum_probs=107.8
Q ss_pred cCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEcccee
Q 045124 140 TSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVR 219 (390)
Q Consensus 140 ~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~ 219 (390)
.+++|+.|.+.+|.+...+ ....+++|++|+|+++.+.+ +.. +..++.|+.|.+.+|....... + -..++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~---~~~-l~~l~~L~~L~l~~n~l~~~~~-l-~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD---IKP-LANLKNLGWLFLDENKVKDLSS-L-KDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC---CGG-GTTCTTCCEEECCSSCCCCGGG-G-TTCTTCC
T ss_pred hcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCC---Ccc-cccCCCCCEEECCCCcCCCChh-h-ccCCCCC
Confidence 4678999999999887776 67889999999999998865 223 7899999999999998754433 2 1458899
Q ss_pred EEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc-ceeeeccCCcceeEEeeeeeeeecCCCCccCCCccHHHH
Q 045124 220 NLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF-AQYILRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDER 298 (390)
Q Consensus 220 ~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l 298 (390)
.|.+ .+|..... ......++|+.|+++++.. ....+.++++|+.++++.+.. ..+
T Consensus 116 ~L~L----~~n~i~~~-----~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l---------------~~~ 171 (291)
T 1h6t_A 116 SLSL----EHNGISDI-----NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI---------------SDI 171 (291)
T ss_dssp EEEC----TTSCCCCC-----GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC---------------CCC
T ss_pred EEEC----CCCcCCCC-----hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcc---------------ccc
Confidence 9999 77766432 1122568899999988643 123567889999998864421 111
Q ss_pred HhhhccCCCccEEEEecccc
Q 045124 299 ISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 299 ~~lL~~~p~L~~L~l~~~~~ 318 (390)
.. +..+++|+.|.++....
T Consensus 172 ~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 172 VP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp GG-GTTCTTCCEEECCSSCC
T ss_pred hh-hcCCCccCEEECCCCcC
Confidence 12 67899999999988754
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.36 E-value=7.8e-07 Score=87.56 Aligned_cols=242 Identities=12% Similarity=0.080 Sum_probs=129.3
Q ss_pred CceeEEEEEEccCCChhHHHHHHHHHHhCCeeEEEEEeccCCCCceecCCCCC-----ccCCcccEEEE-----------
Q 045124 86 LVIRRFYLHCLQSYDAEVLRDWVVRGWTNNVVEVDIRVDNINEDNFLDLPSNL-----CTSTALEVLKL----------- 149 (390)
Q Consensus 86 ~~l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~L~~~~~~~~~~~~lp~~l-----~~c~~L~~L~L----------- 149 (390)
+.++.+.+..... ....+..+........+++|++..+. -...+|..+ ..+++|+.+++
T Consensus 220 ~~L~~L~l~~~~l-~~~~~~~~~~~~~~~~L~~L~l~~n~----l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~ 294 (520)
T 2z7x_B 220 PKLSNLTLNNIET-TWNSFIRILQLVWHTTVWYFSISNVK----LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294 (520)
T ss_dssp TTCCEEEEEEEEE-EHHHHHHHHHHHHTSSCSEEEEEEEE----EESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHH
T ss_pred cchhhcccccccc-CHHHHHHHHHHhhhCcccEEEeeccc----ccCccccchhhcccccCceeEeccccccceecchhh
Confidence 3467776654331 22333444444445688888887652 112455554 33444444444
Q ss_pred ---------------cCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeE---
Q 045124 150 ---------------QGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQF--- 211 (390)
Q Consensus 150 ---------------~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l--- 211 (390)
+++.+...+ ....+++|++|+|+++.+.+ .+...+..++.|++|++.+|....+.. +
T Consensus 295 ~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~ 369 (520)
T 2z7x_B 295 IYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTD--TVFENCGHLTELETLILQMNQLKELSK-IAEM 369 (520)
T ss_dssp HHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT--TTTTTCCCCSSCCEEECCSSCCCBHHH-HHHH
T ss_pred hhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccCh--hhhhhhccCCCCCEEEccCCccCcccc-chHH
Confidence 443332222 12577888888888877764 233445678888888888887532111 0
Q ss_pred EEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccceeeeccC-CcceeEEeeeeeeeecCCCCccC
Q 045124 212 DVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQYILRNL-NLLEKADIGIGGVFMCPRGGGFD 290 (390)
Q Consensus 212 ~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~f~ 290 (390)
--..++|+.|.+ .++..... .+.......++|+.|+++++.........+ ++|+.++++.+...
T Consensus 370 ~~~l~~L~~L~L----s~N~l~~~--l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~--------- 434 (520)
T 2z7x_B 370 TTQMKSLQQLDI----SQNSVSYD--EKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK--------- 434 (520)
T ss_dssp HTTCTTCCEEEC----CSSCCBCC--GGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC---------
T ss_pred HhhCCCCCEEEC----CCCcCCcc--cccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc---------
Confidence 013477888888 56654320 011122345788888887754322222233 57888877544311
Q ss_pred CCccHHHHHhhhccCCCccEEEEecccccccCCCCCCcccccccCCCccchhhcccceEEEEe--cCCchhHHHHHHHHH
Q 045124 291 FDHWSDERISFLPEVYNVNSLALSGCTVGEAKGEFPDCVQRWEERDVPADCLRNCLRGISVRG--FGGKLHELQVIEYLL 368 (390)
Q Consensus 291 ~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v~i~~--~~g~~~e~~~~~~ll 368 (390)
.+..-+..+|+|+.|.++....... +.. ... ...+|+.+.+.+ +.+......++...+
T Consensus 435 ------~ip~~~~~l~~L~~L~L~~N~l~~l----~~~--------~~~--~l~~L~~L~l~~N~~~c~c~~~~~~~~~~ 494 (520)
T 2z7x_B 435 ------SIPKQVVKLEALQELNVASNQLKSV----PDG--------IFD--RLTSLQKIWLHTNPWDCSCPRIDYLSRWL 494 (520)
T ss_dssp ------CCCGGGGGCTTCCEEECCSSCCCCC----CTT--------TTT--TCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred ------ccchhhhcCCCCCEEECCCCcCCcc----CHH--------Hhc--cCCcccEEECcCCCCcccCCchHHHHHHH
Confidence 1222234788888888888754311 000 011 136788888876 445544456634444
Q ss_pred hccc
Q 045124 369 KNAR 372 (390)
Q Consensus 369 ~~a~ 372 (390)
++..
T Consensus 495 ~~~~ 498 (520)
T 2z7x_B 495 NKNS 498 (520)
T ss_dssp HHTT
T ss_pred Hhcc
Confidence 4443
No 40
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.36 E-value=1.8e-07 Score=93.93 Aligned_cols=233 Identities=16% Similarity=0.110 Sum_probs=134.8
Q ss_pred CCeeEEEEEeccCCCCceecCCCC-CccCCcccEEEEcCeeecCCC--CCCcccCCcccEEEeeeEEECCCchHhHhhhc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSN-LCTSTALEVLKLQGNITLDPD--PDQRVIFPSLRILHMDVIQLGVSGHHRDLYRC 190 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~-l~~c~~L~~L~L~~~~~~~~~--~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~ 190 (390)
..++.|++..+ .....+|.. +..+++|+.|+++++.+...+ +.....+++|++|+|+++.+.+ .....+..
T Consensus 325 ~~L~~L~l~~n----~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~ 398 (606)
T 3t6q_A 325 PSLTHLSIKGN----TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS--LKTEAFKE 398 (606)
T ss_dssp TTCSEEECCSC----SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE--ECTTTTTT
T ss_pred CcCCEEECCCC----CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc--CCHHHhcC
Confidence 67888888654 223345554 566899999999988764432 2256688999999998876542 23445677
Q ss_pred CCccceEEEeceecCCCCeeE-EEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc------eee
Q 045124 191 CPVLDDLYVRGNIAEPLPFQF-DVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA------QYI 263 (390)
Q Consensus 191 cp~Le~L~l~~c~~~~~~~~l-~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~------~~~ 263 (390)
++.|+.|++.+|........- --..++|+.|.+ .+|..... .....-..|+|++|+++++... ...
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l----~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 471 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL----SHSLLDIS---SEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC----TTCCCBTT---CTTTTTTCTTCCEEECTTCBCGGGEECSSCG
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEEC----CCCccCCc---CHHHHhCCCCCCEEECCCCCCCccccccchh
Confidence 899999999888653221100 013478999999 66655321 0111224688899988875421 134
Q ss_pred eccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccccccC-CCCCCccc-----ccccCCC
Q 045124 264 LRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTVGEAK-GEFPDCVQ-----RWEERDV 337 (390)
Q Consensus 264 ~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~-~~~~~~~~-----~w~~~~~ 337 (390)
+.++++|+.++++.+..... ....+..+|+|+.|.|+........ ..|..... ..+....
T Consensus 472 ~~~l~~L~~L~Ls~n~l~~~--------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~ 537 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCDLSSI--------------DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISI 537 (606)
T ss_dssp GGGCTTCCEEECTTSCCCEE--------------CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCC
T ss_pred hccCCCccEEECCCCccCcc--------------ChhhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccc
Confidence 67788888888865432111 0122456677777777766442110 01110000 0011111
Q ss_pred cc-c--hhhcccceEEEEe--cCCchhHHHHHHHHHhcccc
Q 045124 338 PA-D--CLRNCLRGISVRG--FGGKLHELQVIEYLLKNARV 373 (390)
Q Consensus 338 ~~-~--c~~~~Lk~v~i~~--~~g~~~e~~~~~~ll~~a~~ 373 (390)
.+ . ....+|+.+.+.| +.+......|+.++-++...
T Consensus 538 ~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~ 578 (606)
T 3t6q_A 538 ILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQK 578 (606)
T ss_dssp CCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGG
T ss_pred cCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCccc
Confidence 11 1 1236788888876 44666667888888766443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.35 E-value=7e-07 Score=89.62 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=29.0
Q ss_pred CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEecee
Q 045124 137 NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNI 203 (390)
Q Consensus 137 ~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~ 203 (390)
.+..+++|+.|+|++|.+...++..+..+++|++|+|+++.+.. ....++..++.|+.|+|.+|.
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC--CCHHHhccCCCCCEEEeeCCc
Confidence 33344555555555554444433233445555555555444431 112233444555555555443
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.33 E-value=3e-07 Score=89.58 Aligned_cols=132 Identities=13% Similarity=-0.012 Sum_probs=59.2
Q ss_pred CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEcc
Q 045124 137 NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVST 216 (390)
Q Consensus 137 ~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~ 216 (390)
.+..+++|++|+|+++.+...++.....+++|++|+|.++.+.. .....+..++.|+.|+|.++.........--..+
T Consensus 123 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 200 (477)
T 2id5_A 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS--IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200 (477)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS--CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT
T ss_pred HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc--cChhHhcccCCCcEEeCCCCcCcEeChhhcccCc
Confidence 34445555555555554433332244455666666666655542 1223455566666666666543211000001235
Q ss_pred ceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccce---eeeccCCcceeEEeee
Q 045124 217 SVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQ---YILRNLNLLEKADIGI 277 (390)
Q Consensus 217 ~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~---~~~~~~~~L~~l~l~~ 277 (390)
+|+.|.+ .+|..... ........++|++|+++++.... ..+.++++|+.++++.
T Consensus 201 ~L~~L~l----~~~~~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 201 RLKVLEI----SHWPYLDT---MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp TCCEEEE----ECCTTCCE---ECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred ccceeeC----CCCccccc---cCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 5666666 34332110 00000112256666665542211 1245566666666643
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.32 E-value=9.9e-08 Score=88.45 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=50.4
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.++++|+|..+. -....|..+..+++|++|+|+++.+..+|. ..+++|++|+|.+..+.. .....+..++.
T Consensus 78 ~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~L~~L~l~~n~i~~--~~~~~~~~l~~ 148 (332)
T 2ft3_A 78 QHLYALVLVNNK----ISKIHEKAFSPLRKLQKLYISKNHLVEIPP---NLPSSLVELRIHDNRIRK--VPKGVFSGLRN 148 (332)
T ss_dssp TTCCEEECCSSC----CCEECGGGSTTCTTCCEEECCSSCCCSCCS---SCCTTCCEEECCSSCCCC--CCSGGGSSCSS
T ss_pred CCCcEEECCCCc----cCccCHhHhhCcCCCCEEECCCCcCCccCc---cccccCCEEECCCCccCc--cCHhHhCCCcc
Confidence 467777775441 112224455667788888887777665552 123777788777766653 22334566777
Q ss_pred cceEEEeceec
Q 045124 194 LDDLYVRGNIA 204 (390)
Q Consensus 194 Le~L~l~~c~~ 204 (390)
|+.|++.++..
T Consensus 149 L~~L~l~~n~l 159 (332)
T 2ft3_A 149 MNCIEMGGNPL 159 (332)
T ss_dssp CCEEECCSCCC
T ss_pred CCEEECCCCcc
Confidence 77777777654
No 44
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.31 E-value=7.6e-08 Score=88.69 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=40.6
Q ss_pred CCeeEEEEEeccCCCCceecCC-CCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLP-SNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp-~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
.++++|+|..+.. ..++ ..+..+++|++|+|++|.+...+ ....+++|++|+|+++.+.+ +..+|
T Consensus 34 ~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~-------l~~~~ 99 (317)
T 3o53_A 34 WNVKELDLSGNPL-----SQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQE-------LLVGP 99 (317)
T ss_dssp GGCSEEECTTSCC-----CCCCHHHHTTCTTCCEEECTTSCCEEEE--EETTCTTCCEEECCSSEEEE-------EEECT
T ss_pred CCCCEEECcCCcc-----CcCCHHHhhCCCcCCEEECCCCcCCcch--hhhhcCCCCEEECcCCcccc-------ccCCC
Confidence 3566666643311 1122 23445566666666666554333 24556666666666665543 11346
Q ss_pred ccceEEEeceec
Q 045124 193 VLDDLYVRGNIA 204 (390)
Q Consensus 193 ~Le~L~l~~c~~ 204 (390)
.|+.|.+.+|..
T Consensus 100 ~L~~L~l~~n~l 111 (317)
T 3o53_A 100 SIETLHAANNNI 111 (317)
T ss_dssp TCCEEECCSSCC
T ss_pred CcCEEECCCCcc
Confidence 666666666553
No 45
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.30 E-value=1.1e-07 Score=84.46 Aligned_cols=126 Identities=17% Similarity=0.090 Sum_probs=62.7
Q ss_pred CcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeEE
Q 045124 142 TALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNL 221 (390)
Q Consensus 142 ~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L 221 (390)
++|+.|+|+++.+...++.....+++|++|+|++..+.+ .....+..++.|+.|+|.++.........--..++|+.|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc--cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 466667776666555544345566667777776665543 223345566667777766665432211000023566666
Q ss_pred EeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccce---eeeccCCcceeEEee
Q 045124 222 NSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQ---YILRNLNLLEKADIG 276 (390)
Q Consensus 222 ~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~---~~~~~~~~L~~l~l~ 276 (390)
.+ .++.+... .....-..++|+.|++++..... ..+.++++|+.+++.
T Consensus 113 ~L----~~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 113 YL----GGNQLKSL---PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp EC----CSSCCCCC---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred Ec----CCCcCCCc---ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 66 44443211 00001134566666665543211 124455666666664
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.30 E-value=3.6e-08 Score=90.24 Aligned_cols=181 Identities=13% Similarity=0.041 Sum_probs=92.3
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.++++|+|..+.. ......|..+..+++|++|+|+++.+...+. ....+++|++|+|++..+.+ ......+..++.
T Consensus 52 ~~L~~L~L~~n~l--~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~ 127 (306)
T 2z66_A 52 TQLTKLSLSSNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQ-MSEFSVFLSLRN 127 (306)
T ss_dssp TTCSEEECCSSCC--CEEEEEEHHHHSCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEES-STTTTTTTTCTT
T ss_pred ccCCEEECCCCcc--CcccCcccccccccccCEEECCCCccccChh-hcCCCCCCCEEECCCCcccc-cccchhhhhccC
Confidence 4566676654311 1111123344456677777777766544442 34567777777777766653 111134556777
Q ss_pred cceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccce---eeeccCCcc
Q 045124 194 LDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQ---YILRNLNLL 270 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~---~~~~~~~~L 270 (390)
|+.|++.+|.........--..++|+.|.+ .++.+... ......-..++|++|+++++.... ..+.++++|
T Consensus 128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l----~~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKM----AGNSFQEN--FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201 (306)
T ss_dssp CCEEECTTSCCEECSTTTTTTCTTCCEEEC----TTCEEGGG--EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCEEECCCCcCCccchhhcccCcCCCEEEC----CCCccccc--cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence 777777766531110000012366777777 45443210 001111245677777776643211 235567777
Q ss_pred eeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccc
Q 045124 271 EKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 271 ~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
++++++.+.....+ ...+..+++|+.|.++....
T Consensus 202 ~~L~L~~N~l~~~~--------------~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 202 QVLNMSHNNFFSLD--------------TFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CEEECTTSCCSBCC--------------SGGGTTCTTCCEEECTTSCC
T ss_pred CEEECCCCccCccC--------------hhhccCcccCCEeECCCCCC
Confidence 77777433211100 01245677888888777644
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.29 E-value=1.5e-06 Score=86.59 Aligned_cols=149 Identities=10% Similarity=0.051 Sum_probs=76.2
Q ss_pred ccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEE---EEccceeE
Q 045124 144 LEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFD---VVSTSVRN 220 (390)
Q Consensus 144 L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~---i~~~~L~~ 220 (390)
|++|+++++.+...+ ....+++|++|+|++..+.+ .+...+..++.|+.|++.+|....+.. +. -..++|+.
T Consensus 333 L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~ 407 (562)
T 3a79_B 333 IKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTD--SVFQGCSTLKRLQTLILQRNGLKNFFK-VALMTKNMSSLET 407 (562)
T ss_dssp CSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT--TTTTTCCSCSSCCEEECCSSCCCBTTH-HHHTTTTCTTCCE
T ss_pred ceEEEccCCCccccc--CccCCCCceEEECCCCcccc--chhhhhcccCCCCEEECCCCCcCCccc-chhhhcCCCCCCE
Confidence 555555555443222 22466777777777766653 233445667777777777765533221 00 12366777
Q ss_pred EEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccceeeeccC-CcceeEEeeeeeeeecCCCCccCCCccHHHHH
Q 045124 221 LNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQYILRNL-NLLEKADIGIGGVFMCPRGGGFDFDHWSDERI 299 (390)
Q Consensus 221 L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~ 299 (390)
|.+ .++..... .+.......++|+.|+++++......+..+ ++|+.++++.+.... +.
T Consensus 408 L~l----~~N~l~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~---------------ip 466 (562)
T 3a79_B 408 LDV----SLNSLNSH--AYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS---------------IP 466 (562)
T ss_dssp EEC----TTSCCBSC--CSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCC---------------CC
T ss_pred EEC----CCCcCCCc--cChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcc---------------cC
Confidence 777 55544320 011122345677777776654322222333 467777665432111 11
Q ss_pred hhhccCCCccEEEEecccc
Q 045124 300 SFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 300 ~lL~~~p~L~~L~l~~~~~ 318 (390)
.-+..+|+|+.|.++....
T Consensus 467 ~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 467 KDVTHLQALQELNVASNQL 485 (562)
T ss_dssp TTTTSSCCCSEEECCSSCC
T ss_pred hhhcCCCCCCEEECCCCCC
Confidence 1123567777777776544
No 48
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.29 E-value=1.5e-07 Score=78.05 Aligned_cols=109 Identities=16% Similarity=0.046 Sum_probs=72.4
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.++++|++..+.. ....+|..+..+++|+.|+|++|.+...+ ....+++|++|+|+++.+.+ .+..++..+|.
T Consensus 24 ~~L~~L~l~~n~l---~~~~i~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCKS---NDGKIEGLTAEFVNLEFLSLINVGLISVS--NLPKLPKLKKLELSENRIFG--GLDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCSCBC---BTTBCSSCCGGGGGCCEEEEESSCCCCCS--SCCCCSSCCEEEEESCCCCS--CCCHHHHHCTT
T ss_pred ccCCEEECCCCCC---ChhhHHHHHHhCCCCCEEeCcCCCCCChh--hhccCCCCCEEECcCCcCch--HHHHHHhhCCC
Confidence 5678888865411 11256776677888888888888765553 66778888888888888764 25666677888
Q ss_pred cceEEEeceecCCCCe-eEEEEccceeEEEeeeeeccCCCC
Q 045124 194 LDDLYVRGNIAEPLPF-QFDVVSTSVRNLNSEFYLEDKHFD 233 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~-~l~i~~~~L~~L~i~~~~~~~~~~ 233 (390)
|+.|++.+|...+... ..--..++|+.|.+ .++.+.
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l----~~N~l~ 133 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDL----FNCEVT 133 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEEC----CSSGGG
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEe----eCCcCc
Confidence 8888888887644321 00013467777777 555543
No 49
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.29 E-value=3.4e-07 Score=78.16 Aligned_cols=126 Identities=12% Similarity=0.019 Sum_probs=87.0
Q ss_pred hCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 113 TNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 113 ~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
..++++|++..+ ....++.+..+++|++|++++|.+....+.....+++|++|+|+++.+.+ . ....+..++
T Consensus 65 l~~L~~L~l~~n------~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~-~-~~~~l~~l~ 136 (197)
T 4ezg_A 65 AHNIKDLTINNI------HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD-S-ILTKINTLP 136 (197)
T ss_dssp CTTCSEEEEESC------CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG-G-GHHHHTTCS
T ss_pred CCCCCEEEccCC------CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc-H-hHHHHhhCC
Confidence 368899999755 12333456778999999999987754222266789999999999988874 2 345567899
Q ss_pred ccceEEEecee-cCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeec
Q 045124 193 VLDDLYVRGNI-AEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELREN 257 (390)
Q Consensus 193 ~Le~L~l~~c~-~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~ 257 (390)
.|+.|++.+|. ..++.. + -..++|+.|.+ .+|.+... ...-..|+|+.|++++.
T Consensus 137 ~L~~L~L~~n~~i~~~~~-l-~~l~~L~~L~l----~~n~i~~~-----~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDIMP-L-KTLPELKSLNI----QFDGVHDY-----RGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp SCCEEECCSCTBCCCCGG-G-GGCSSCCEEEC----TTBCCCCC-----TTGGGCSSCCEEEECBC
T ss_pred CCCEEEccCCCCccccHh-h-cCCCCCCEEEC----CCCCCcCh-----HHhccCCCCCEEEeeCc
Confidence 99999999997 444332 2 14578999999 67665432 11124566777777664
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.27 E-value=1.5e-06 Score=87.09 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=68.1
Q ss_pred CCeeEEEEEeccCCCCceecCC-CCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLP-SNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp-~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
..+++|+|.... ...++ ..+..+++|++|+|++|.+...++..+..+++|++|+|++..+.. .....+.+++
T Consensus 32 ~~l~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~ 104 (606)
T 3vq2_A 32 SSTKNIDLSFNP-----LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS--FSPGSFSGLT 104 (606)
T ss_dssp TTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC--CCTTSSTTCT
T ss_pred CCcCEEECCCCC-----cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc--cChhhcCCcc
Confidence 456666664431 11233 345566777777777766554443345566777777777665542 2234456677
Q ss_pred ccceEEEeceecCCCCeeEEE-EccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeec
Q 045124 193 VLDDLYVRGNIAEPLPFQFDV-VSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELREN 257 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~ 257 (390)
+|++|++.+|....... ..+ ..++|+.|.+ .++..... ......-..++|+.|+++++
T Consensus 105 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L----~~n~l~~~--~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 105 SLENLVAVETKLASLES-FPIGQLITLKKLNV----AHNFIHSC--KLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp TCCEEECTTSCCCCSSS-SCCTTCTTCCEEEC----CSSCCCCC--CCCGGGGTCTTCCEEECCSS
T ss_pred cCCEEEccCCccccccc-cccCCCCCCCEEeC----CCCcccce--echHhHhhcCCCCEEEccCC
Confidence 77777777765533221 111 3456777777 45543211 00011124566666666654
No 51
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.27 E-value=1.9e-07 Score=96.63 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=92.7
Q ss_pred CCeeEEEEEeccCCCCceecCCC--CCccCCcccEEEEcCeeecCC-CCCCcccCCcccEEEeeeEEECCCchHh--Hhh
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPS--NLCTSTALEVLKLQGNITLDP-DPDQRVIFPSLRILHMDVIQLGVSGHHR--DLY 188 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~--~l~~c~~L~~L~L~~~~~~~~-~~~~~~~~~~Lk~L~L~~v~~~~~~~l~--~ll 188 (390)
.+++.|+|..+ .-...+|. .+..+++|++|+|++|.+... |......+++|++|+|+++.+.+ .... ..+
T Consensus 100 ~~L~~L~Ls~n----~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~ 174 (768)
T 3rgz_A 100 ASLTSLDLSRN----SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG-ANVVGWVLS 174 (768)
T ss_dssp TTCCEEECCSS----EEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEE-ETHHHHHHT
T ss_pred CCCCEEECCCC----cCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCC-cCChhhhhh
Confidence 46777777544 11233555 677788888888888776432 21122578888888888877654 2211 236
Q ss_pred hcCCccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc---eeeec
Q 045124 189 RCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA---QYILR 265 (390)
Q Consensus 189 ~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~---~~~~~ 265 (390)
.+|+.|++|++.+|...+... . -..++|+.|.+ .+|.+... ....-..++|++|+++++... ...+.
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~-~-~~l~~L~~L~L----s~n~l~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 244 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVD-V-SRCVNLEFLDV----SSNNFSTG----IPFLGDCSALQHLDISGNKLSGDFSRAIS 244 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCB-C-TTCTTCCEEEC----CSSCCCSC----CCBCTTCCSCCEEECCSSCCCSCHHHHTT
T ss_pred ccCCCCCEEECCCCcccccCC-c-ccCCcCCEEEC----cCCcCCCC----CcccccCCCCCEEECcCCcCCCcccHHHh
Confidence 788888888888887633222 1 24577888888 66655421 111235677888888775421 23456
Q ss_pred cCCcceeEEeeee
Q 045124 266 NLNLLEKADIGIG 278 (390)
Q Consensus 266 ~~~~L~~l~l~~~ 278 (390)
++++|+++++..+
T Consensus 245 ~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 245 TCTELKLLNISSN 257 (768)
T ss_dssp TCSSCCEEECCSS
T ss_pred cCCCCCEEECCCC
Confidence 7777777777544
No 52
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.27 E-value=4.3e-07 Score=82.57 Aligned_cols=198 Identities=19% Similarity=0.155 Sum_probs=105.9
Q ss_pred cCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEE
Q 045124 133 DLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFD 212 (390)
Q Consensus 133 ~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~ 212 (390)
.+|..+. ++++.|+|+++.+...++.....+++|+.|+|++..+.. +.. ...++.|+.|++.++....+.. .-
T Consensus 24 ~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~-~~~l~~L~~L~Ls~N~l~~l~~-~~ 96 (290)
T 1p9a_G 24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQV-DGTLPVLGTLDLSHNQLQSLPL-LG 96 (290)
T ss_dssp SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE---EEC-CSCCTTCCEEECCSSCCSSCCC-CT
T ss_pred cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc---ccC-CCCCCcCCEEECCCCcCCcCch-hh
Confidence 4555443 567777777776544433345567777777777766543 111 1567777777777776533222 11
Q ss_pred EEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc---eeeeccCCcceeEEeeeeeeeecCCCCcc
Q 045124 213 VVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA---QYILRNLNLLEKADIGIGGVFMCPRGGGF 289 (390)
Q Consensus 213 i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~f 289 (390)
-..++|+.|.+ .++.+... .....-..++|++|.+++.... ...+..+++|+.++++.......+
T Consensus 97 ~~l~~L~~L~l----~~N~l~~l---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----- 164 (290)
T 1p9a_G 97 QTLPALTVLDV----SFNRLTSL---PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP----- 164 (290)
T ss_dssp TTCTTCCEEEC----CSSCCCCC---CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-----
T ss_pred ccCCCCCEEEC----CCCcCccc---CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC-----
Confidence 13466777777 55544321 0011124567777777665321 122456777777777533211111
Q ss_pred CCCccHHHHHhhhccCCCccEEEEecccccccCCCCCCcccccccCCCccchhhcccceEEEEe--cCCchhHHHHHHHH
Q 045124 290 DFDHWSDERISFLPEVYNVNSLALSGCTVGEAKGEFPDCVQRWEERDVPADCLRNCLRGISVRG--FGGKLHELQVIEYL 367 (390)
Q Consensus 290 ~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v~i~~--~~g~~~e~~~~~~l 367 (390)
..++..+++|+.|.++........ .... ...+|+.+.+.| +.....-..|..++
T Consensus 165 ---------~~~~~~l~~L~~L~L~~N~l~~ip-------------~~~~--~~~~L~~l~L~~Np~~C~c~~~~l~~wl 220 (290)
T 1p9a_G 165 ---------AGLLNGLENLDTLLLQENSLYTIP-------------KGFF--GSHLLPFAFLHGNPWLCNCEILYFRRWL 220 (290)
T ss_dssp ---------TTTTTTCTTCCEEECCSSCCCCCC-------------TTTT--TTCCCSEEECCSCCBCCSGGGHHHHHHH
T ss_pred ---------HHHhcCcCCCCEEECCCCcCCccC-------------hhhc--ccccCCeEEeCCCCccCcCccHHHHHHH
Confidence 123456788888888776442100 0011 123577777765 33343445666676
Q ss_pred Hhcccc
Q 045124 368 LKNARV 373 (390)
Q Consensus 368 l~~a~~ 373 (390)
-+++..
T Consensus 221 ~~~~~~ 226 (290)
T 1p9a_G 221 QDNAEN 226 (290)
T ss_dssp HHTGGG
T ss_pred HhCccc
Confidence 665543
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.27 E-value=1.2e-07 Score=95.27 Aligned_cols=150 Identities=18% Similarity=0.163 Sum_probs=102.0
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCc-cCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLC-TSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~-~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
.+++.+++... ....+|+.++ .+++|+.|+|+++.+...++.....+++|++|+|+++.+.. .....+.+++
T Consensus 51 ~~l~~l~l~~~-----~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~ 123 (597)
T 3oja_B 51 NNQKIVTFKNS-----TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY--LPPHVFQNVP 123 (597)
T ss_dssp CCCSEEEESSC-----EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCT
T ss_pred CCceEEEeeCC-----CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC--CCHHHHcCCC
Confidence 56677777433 2345676654 47899999999988766665467789999999999887764 3345667899
Q ss_pred ccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccceeeeccCCccee
Q 045124 193 VLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQYILRNLNLLEK 272 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~~~~~~~L~~ 272 (390)
.|+.|+|.+|....+...+--..++|+.|.+ .+|.+... .....-..++|++|+++++......+..+++|+.
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L----s~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 196 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSM----SNNNLERI---EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 196 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC----CSSCCCBC---CTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSE
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEe----eCCcCCCC---ChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhh
Confidence 9999999998764332100013578999999 66665421 0011225688999999886544455677888888
Q ss_pred EEeee
Q 045124 273 ADIGI 277 (390)
Q Consensus 273 l~l~~ 277 (390)
+++..
T Consensus 197 L~l~~ 201 (597)
T 3oja_B 197 ANVSY 201 (597)
T ss_dssp EECCS
T ss_pred hhccc
Confidence 87754
No 54
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.26 E-value=1.4e-06 Score=86.27 Aligned_cols=210 Identities=15% Similarity=0.119 Sum_probs=131.8
Q ss_pred hCCeeEEEEEeccCCCCceecCCCCCc-cCCcccEEEEcCeeecCC-C--CCCcccCCcccEEEeeeEEECCCchHhHhh
Q 045124 113 TNNVVEVDIRVDNINEDNFLDLPSNLC-TSTALEVLKLQGNITLDP-D--PDQRVIFPSLRILHMDVIQLGVSGHHRDLY 188 (390)
Q Consensus 113 ~~~v~~L~L~~~~~~~~~~~~lp~~l~-~c~~L~~L~L~~~~~~~~-~--~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll 188 (390)
...++.|++..+. ...+|..++ .+++|+.|+|++|.+... | ......+++|++|+|+++.+.+-......+
T Consensus 309 ~~~L~~L~l~~n~-----l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 383 (549)
T 2z81_A 309 LEKVKRITVENSK-----VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383 (549)
T ss_dssp STTCCEEEEESSC-----CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG
T ss_pred cccceEEEeccCc-----cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhh
Confidence 3567788876541 235676664 589999999999876431 1 113467899999999998876412123568
Q ss_pred hcCCccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccceeeeccCC
Q 045124 189 RCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQYILRNLN 268 (390)
Q Consensus 189 ~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~~~~~~ 268 (390)
..++.|+.|++.+|....+.. ..-..++|+.|.+ .+|..... ... ..++|++|+++++... ....+++
T Consensus 384 ~~l~~L~~L~Ls~N~l~~lp~-~~~~~~~L~~L~L----s~N~l~~l---~~~---~~~~L~~L~Ls~N~l~-~~~~~l~ 451 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNL----SSTGIRVV---KTC---IPQTLEVLDVSNNNLD-SFSLFLP 451 (549)
T ss_dssp GGCTTCCEEECTTCCCCCCCS-CCCCCTTCCEEEC----TTSCCSCC---CTT---SCTTCSEEECCSSCCS-CCCCCCT
T ss_pred hcCCCCCEEECCCCCCccCCh-hhcccccccEEEC----CCCCcccc---cch---hcCCceEEECCCCChh-hhcccCC
Confidence 889999999999997654332 1124578999999 67765421 000 1268999999886542 2346889
Q ss_pred cceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccccccCCCCCCcccccccCCCccchhhcccce
Q 045124 269 LLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTVGEAKGEFPDCVQRWEERDVPADCLRNCLRG 348 (390)
Q Consensus 269 ~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~ 348 (390)
+|++++++.+.... +.. ...+|+|+.|.++....... .. ... ....+|+.
T Consensus 452 ~L~~L~Ls~N~l~~---------------ip~-~~~l~~L~~L~Ls~N~l~~~-------~~-----~~~--~~l~~L~~ 501 (549)
T 2z81_A 452 RLQELYISRNKLKT---------------LPD-ASLFPVLLVMKISRNQLKSV-------PD-----GIF--DRLTSLQK 501 (549)
T ss_dssp TCCEEECCSSCCSS---------------CCC-GGGCTTCCEEECCSSCCCCC-------CT-----TGG--GGCTTCCE
T ss_pred hhcEEECCCCccCc---------------CCC-cccCccCCEEecCCCccCCc-------CH-----HHH--hcCcccCE
Confidence 99999986543211 111 23578999999988754210 00 001 12367888
Q ss_pred EEEEe--cCCchhHHHHHHHHHh
Q 045124 349 ISVRG--FGGKLHELQVIEYLLK 369 (390)
Q Consensus 349 v~i~~--~~g~~~e~~~~~~ll~ 369 (390)
+.+.+ +.+....+.+....++
T Consensus 502 L~l~~N~~~~~~~~~~~l~~~l~ 524 (549)
T 2z81_A 502 IWLHTNPWDCSCPRIDYLSRWLN 524 (549)
T ss_dssp EECCSSCBCCCHHHHHHHHHHHH
T ss_pred EEecCCCccCCCccHHHHHHHHH
Confidence 88865 3455444555554443
No 55
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.26 E-value=6.5e-07 Score=78.73 Aligned_cols=84 Identities=8% Similarity=0.083 Sum_probs=48.3
Q ss_pred CeeEEEEEeccCCCCceecCCC-CCccCCcccEEEEcCee-ecCCCCCCcccCCcccEEEeee-EEECCCchHhHhhhcC
Q 045124 115 NVVEVDIRVDNINEDNFLDLPS-NLCTSTALEVLKLQGNI-TLDPDPDQRVIFPSLRILHMDV-IQLGVSGHHRDLYRCC 191 (390)
Q Consensus 115 ~v~~L~L~~~~~~~~~~~~lp~-~l~~c~~L~~L~L~~~~-~~~~~~~~~~~~~~Lk~L~L~~-v~~~~~~~l~~ll~~c 191 (390)
.+++|++.... ...+|+ .+..+++|++|+|+++. +..+++..+..+++|++|+|.+ ..+.. .-...+.++
T Consensus 32 ~l~~L~l~~n~-----l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--i~~~~f~~l 104 (239)
T 2xwt_C 32 STQTLKLIETH-----LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--IDPDALKEL 104 (239)
T ss_dssp TCCEEEEESCC-----CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE--ECTTSEECC
T ss_pred cccEEEEeCCc-----ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE--cCHHHhCCC
Confidence 56667765441 123343 34456777777777774 4444433455677777777776 33321 112345567
Q ss_pred CccceEEEeceecC
Q 045124 192 PVLDDLYVRGNIAE 205 (390)
Q Consensus 192 p~Le~L~l~~c~~~ 205 (390)
+.|+.|++.+|...
T Consensus 105 ~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 105 PLLKFLGIFNTGLK 118 (239)
T ss_dssp TTCCEEEEEEECCC
T ss_pred CCCCEEeCCCCCCc
Confidence 77777777777553
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.26 E-value=3.5e-07 Score=82.16 Aligned_cols=162 Identities=17% Similarity=0.176 Sum_probs=109.3
Q ss_pred ecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeE
Q 045124 132 LDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQF 211 (390)
Q Consensus 132 ~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l 211 (390)
..+|..+. ++|++|+|+++.+...++.....+++|++|+|.+..+.. .-..++..++.|+.|+|.++....+....
T Consensus 29 ~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 104 (270)
T 2o6q_A 29 TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNKLQALPIGV 104 (270)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC--CCTTTTSSCTTCCEEECCSSCCCCCCTTT
T ss_pred CccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe--eChhhhcCCCCCCEEECCCCcCCcCCHhH
Confidence 34565443 689999999998877775567789999999999887753 22345678999999999998764332100
Q ss_pred EEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccce---eeeccCCcceeEEeeeeeeeecCCCCc
Q 045124 212 DVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQ---YILRNLNLLEKADIGIGGVFMCPRGGG 288 (390)
Q Consensus 212 ~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~ 288 (390)
--..++|+.|.+ .++.+... .....-..++|++|++++..... ..+.++++|+++++..+.....+
T Consensus 105 ~~~l~~L~~L~l----~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---- 173 (270)
T 2o6q_A 105 FDQLVNLAELRL----DRNQLKSL---PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP---- 173 (270)
T ss_dssp TTTCSSCCEEEC----CSSCCCCC---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC----
T ss_pred cccccCCCEEEC----CCCccCee---CHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC----
Confidence 013578999999 66655422 01111256899999998864322 23678899999998644311111
Q ss_pred cCCCccHHHHHhhhccCCCccEEEEecccc
Q 045124 289 FDFDHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 289 f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
...+..+++|+.|.|+....
T Consensus 174 ----------~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 174 ----------EGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp ----------TTTTTTCTTCCEEECCSSCC
T ss_pred ----------hhHhccCCCcCEEECCCCcC
Confidence 12356789999999988744
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.25 E-value=1.4e-07 Score=86.22 Aligned_cols=177 Identities=14% Similarity=0.068 Sum_probs=89.4
Q ss_pred CCeeEEEEEeccCCCCceecCCCCC-ccCCcccEEEEcCeeecCCC--CCCcccCCcccEEEeeeEEECCCchHhHhhhc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNL-CTSTALEVLKLQGNITLDPD--PDQRVIFPSLRILHMDVIQLGVSGHHRDLYRC 190 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l-~~c~~L~~L~L~~~~~~~~~--~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~ 190 (390)
.++++|+|..+. ...+|... ..+++|++|+|+++.+.... +.....+++|++|+|++..+.. +..-+..
T Consensus 28 ~~l~~L~L~~n~-----l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~---l~~~~~~ 99 (306)
T 2z66_A 28 SSATRLELESNK-----LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT---MSSNFLG 99 (306)
T ss_dssp TTCCEEECCSSC-----CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE---EEEEEET
T ss_pred CCCCEEECCCCc-----cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc---ChhhcCC
Confidence 456666664331 12445443 34566677766666432210 0123346666777666655432 2222455
Q ss_pred CCccceEEEeceecCCCCe-eEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc----ceeeec
Q 045124 191 CPVLDDLYVRGNIAEPLPF-QFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF----AQYILR 265 (390)
Q Consensus 191 cp~Le~L~l~~c~~~~~~~-~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~----~~~~~~ 265 (390)
++.|+.|++.++....... ..-...++|+.|.+ .++..... .....-..++|++|++++... ....+.
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l----~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 172 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI----SHTHTRVA---FNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEEC----TTSCCEEC---STTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEEC----CCCcCCcc---chhhcccCcCCCEEECCCCccccccchhHHh
Confidence 6777777776665422110 00012356777777 44433210 000111346677777766432 123456
Q ss_pred cCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEeccccc
Q 045124 266 NLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTVG 319 (390)
Q Consensus 266 ~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~ 319 (390)
++++|++++++.+..... ....+..+|+|+.|.++.....
T Consensus 173 ~l~~L~~L~Ls~n~l~~~--------------~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQL--------------SPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp TCTTCCEEECTTSCCCEE--------------CTTTTTTCTTCCEEECTTSCCS
T ss_pred hCcCCCEEECCCCCcCCc--------------CHHHhcCCCCCCEEECCCCccC
Confidence 677777777753321110 1233567899999999887553
No 58
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.25 E-value=2.5e-07 Score=82.20 Aligned_cols=151 Identities=19% Similarity=0.139 Sum_probs=100.5
Q ss_pred CCeeEEEEEeccCCCCceecC-CCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDL-PSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~l-p~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
.+++.|+|..+. ...+ |..+..+++|++|+|+++.+...++.....+++|++|+|++..+.. .....+..++
T Consensus 35 ~~l~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQSTG-----LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS--LPLGVFDHLT 107 (251)
T ss_dssp TTCCEEECTTSC-----CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCT
T ss_pred CCCCEEEccCCC-----cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc--cChhHhcccC
Confidence 467788875441 1223 3356678999999999998777665456789999999999887763 2335667899
Q ss_pred ccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc---eeeeccCCc
Q 045124 193 VLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA---QYILRNLNL 269 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~---~~~~~~~~~ 269 (390)
.|+.|+|.++....+....--..++|+.|.+ .++..... .....-..++|+.|+++++... ...+.++++
T Consensus 108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L----s~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRL----NTNQLQSI---PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC----CSSCCCCC---CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred CCCEEEcCCCcCCCcChhHhccCCcccEEEC----cCCcCCcc---CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence 9999999998764332100013578999999 66655422 0001124588999999886432 124567888
Q ss_pred ceeEEeeee
Q 045124 270 LEKADIGIG 278 (390)
Q Consensus 270 L~~l~l~~~ 278 (390)
|+.+++...
T Consensus 181 L~~L~l~~N 189 (251)
T 3m19_A 181 LQTITLFGN 189 (251)
T ss_dssp CCEEECCSC
T ss_pred CCEEEeeCC
Confidence 888888543
No 59
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.25 E-value=2e-07 Score=93.48 Aligned_cols=161 Identities=12% Similarity=0.080 Sum_probs=109.1
Q ss_pred cCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEcccee
Q 045124 140 TSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVR 219 (390)
Q Consensus 140 ~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~ 219 (390)
..++|+.|.|.++.+..++ ....+++|+.|+|+++.+.+ +.. +..++.|+.|.|.+|....+.. +. ..++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~---~~~-l~~l~~L~~L~Ls~N~l~~l~~-l~-~l~~L~ 112 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD---IKP-LTNLKNLGWLFLDENKIKDLSS-LK-DLKKLK 112 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCC---CGG-GGGCTTCCEEECCSSCCCCCTT-ST-TCTTCC
T ss_pred cCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCC---Chh-hccCCCCCEEECcCCCCCCChh-hc-cCCCCC
Confidence 4578999999999887776 67889999999999988865 222 7899999999999998755443 21 458899
Q ss_pred EEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc-ceeeeccCCcceeEEeeeeeeeec------CCCCccC-C
Q 045124 220 NLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF-AQYILRNLNLLEKADIGIGGVFMC------PRGGGFD-F 291 (390)
Q Consensus 220 ~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~------~~~~~f~-~ 291 (390)
.|.+ .+|.+... ......|+|+.|.++++.. ....+.++++|+.++++.+..... +....++ .
T Consensus 113 ~L~L----s~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 113 SLSL----EHNGISDI-----NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 183 (605)
T ss_dssp EEEC----TTSCCCCC-----GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred EEEe----cCCCCCCC-----ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECc
Confidence 9999 77776432 1123678999999988643 224577899999999975542110 0000000 1
Q ss_pred CccHHHHHhhhccCCCccEEEEecccc
Q 045124 292 DHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 292 ~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
.+....+ .-+..+|+|+.|.|.....
T Consensus 184 ~N~i~~l-~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 184 KNHISDL-RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp SSCCCBC-GGGTTCTTCSEEECCSEEE
T ss_pred CCCCCCC-hHHccCCCCCEEEccCCcC
Confidence 1111112 2366778888888877654
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.24 E-value=1.4e-08 Score=98.51 Aligned_cols=188 Identities=16% Similarity=0.110 Sum_probs=111.5
Q ss_pred CeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCC-----CcccCCcccEEEeeeEEECCC--chHhHh
Q 045124 115 NVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPD-----QRVIFPSLRILHMDVIQLGVS--GHHRDL 187 (390)
Q Consensus 115 ~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~-----~~~~~~~Lk~L~L~~v~~~~~--~~l~~l 187 (390)
++++|+|..+.........+|..+..+++|++|+|++|.+.+.... .....++|++|+|+++.+.+. ..+...
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 6888888655222112235566777889999999998865321100 012356799999999887752 135666
Q ss_pred hhcCCccceEEEeceecCCCCe-eEE----EEccceeEEEeeeeeccCCCCCCCCCc---ceEEEecCccceEEeeeccc
Q 045124 188 YRCCPVLDDLYVRGNIAEPLPF-QFD----VVSTSVRNLNSEFYLEDKHFDNEDNVS---LTFEINTQNLVCLELRENFF 259 (390)
Q Consensus 188 l~~cp~Le~L~l~~c~~~~~~~-~l~----i~~~~L~~L~i~~~~~~~~~~~~~~~~---~~~~i~ap~L~~L~~~~~~~ 259 (390)
+..|+.|++|++.+|...+... .+. -..++|+.|.+ .+|..... +. ....-..++|+.|+++++..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L----~~n~l~~~--~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL----ESCGVTSD--NCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC----TTSCCBTT--HHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc----cCCCCcHH--HHHHHHHHHHhCCCccEEeccCCcC
Confidence 7789999999999886522110 000 01358999999 67765431 00 11112568899999887532
Q ss_pred ce--------eeeccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccc
Q 045124 260 AQ--------YILRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 260 ~~--------~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
.. ....++++|++++++.+.. .......+...+..+|+|+.|.++....
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l----------~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGI----------TAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCC----------CHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCC----------CHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 11 1123578888888854421 0011223555666777777777776543
No 61
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.22 E-value=1.8e-07 Score=93.95 Aligned_cols=87 Identities=11% Similarity=-0.054 Sum_probs=42.8
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
..++.|++..+.. ......|..+..+++|+.|+|++|.+...| .....+++|++|+|.++.+.+ ..-...+..++.
T Consensus 350 ~~L~~L~ls~n~l--~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~ 425 (606)
T 3vq2_A 350 PSLSYLDLSRNAL--SFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKR-VTEFSAFLSLEK 425 (606)
T ss_dssp TTCCEEECCSSCE--EEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEES-TTTTTTTTTCTT
T ss_pred CCCCEEECcCCcc--CCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCC-ccChhhhhcccc
Confidence 4566666643311 001112444445566666666666544333 244456666666666655543 111133445666
Q ss_pred cceEEEeceec
Q 045124 194 LDDLYVRGNIA 204 (390)
Q Consensus 194 Le~L~l~~c~~ 204 (390)
|+.|++.+|..
T Consensus 426 L~~L~l~~n~l 436 (606)
T 3vq2_A 426 LLYLDISYTNT 436 (606)
T ss_dssp CCEEECTTSCC
T ss_pred CCEEECcCCCC
Confidence 66666665543
No 62
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.22 E-value=1.2e-06 Score=80.94 Aligned_cols=174 Identities=13% Similarity=0.121 Sum_probs=109.6
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.+++.|++..+. ...+|..++ ++|++|+++++.+...++.....+++|++|+|.+..+.........+..++.
T Consensus 100 ~~L~~L~Ls~n~-----l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 100 VKLERLYLSKNQ-----LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp TTCCEEECCSSC-----CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred CCCCEEECCCCc-----CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 577888886541 225565554 6888888888876555533356788888888888776532233445677888
Q ss_pred cceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccce---eeeccCCcc
Q 045124 194 LDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQ---YILRNLNLL 270 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~---~~~~~~~~L 270 (390)
|+.|++.+|....+.. ...++|+.|.+ .++..... .....-..++|+.|++++..... ..+.++++|
T Consensus 173 L~~L~l~~n~l~~l~~---~~~~~L~~L~l----~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 173 LSYIRIADTNITTIPQ---GLPPSLTELHL----DGNKITKV---DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp CCEEECCSSCCCSCCS---SCCTTCSEEEC----TTSCCCEE---CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred cCEEECCCCccccCCc---cccccCCEEEC----CCCcCCcc---CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence 8888888887644332 11277888888 56654311 00011145788888887754322 135677888
Q ss_pred eeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEeccccc
Q 045124 271 EKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTVG 319 (390)
Q Consensus 271 ~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~ 319 (390)
++++++.+... .+...+..+|+|+.|.++.....
T Consensus 243 ~~L~L~~N~l~---------------~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 243 RELHLNNNKLV---------------KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp CEEECCSSCCS---------------SCCTTTTTCSSCCEEECCSSCCC
T ss_pred CEEECCCCcCc---------------cCChhhccCCCcCEEECCCCcCC
Confidence 88888544311 12233567899999999887654
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.22 E-value=4.1e-07 Score=88.98 Aligned_cols=138 Identities=17% Similarity=0.184 Sum_probs=70.0
Q ss_pred CeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCcc
Q 045124 115 NVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVL 194 (390)
Q Consensus 115 ~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~L 194 (390)
+++.|+|..+.. ....|..+..+++|++|+|++|.+...+ ....+++|++|+|+++.+.+ +..+|.|
T Consensus 35 ~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~-------l~~~~~L 101 (487)
T 3oja_A 35 NVKELDLSGNPL----SQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQE-------LLVGPSI 101 (487)
T ss_dssp GCCEEECCSSCC----CCCCGGGGTTCTTCCEEECTTSCCEEEE--ECTTCTTCCEEECCSSEEEE-------EEECTTC
T ss_pred CccEEEeeCCcC----CCCCHHHHhCCCCCCEEEeeCCCCCCCc--ccccCCCCCEEEecCCcCCC-------CCCCCCc
Confidence 567777754411 1112234555677777777777654443 25567777777777766653 1123666
Q ss_pred ceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEE-EecCccceEEeeeccccee---ee-ccCCc
Q 045124 195 DDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFE-INTQNLVCLELRENFFAQY---IL-RNLNL 269 (390)
Q Consensus 195 e~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~-i~ap~L~~L~~~~~~~~~~---~~-~~~~~ 269 (390)
+.|++.+|...... .-..++|+.|.+ .++.+... .... ...++|+.|+++++..... .+ .++++
T Consensus 102 ~~L~L~~N~l~~~~---~~~l~~L~~L~L----~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 102 ETLHAANNNISRVS---CSRGQGKKNIYL----ANNKITML----RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp CEEECCSSCCCCEE---ECCCSSCEEEEC----CSSCCCSG----GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred CEEECcCCcCCCCC---ccccCCCCEEEC----CCCCCCCC----CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 77766666543211 112355666666 44443321 1111 1345566666655332111 12 24555
Q ss_pred ceeEEee
Q 045124 270 LEKADIG 276 (390)
Q Consensus 270 L~~l~l~ 276 (390)
|+.++++
T Consensus 171 L~~L~Ls 177 (487)
T 3oja_A 171 LEHLNLQ 177 (487)
T ss_dssp CCEEECT
T ss_pred ccEEecC
Confidence 5555554
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.22 E-value=1.2e-07 Score=87.07 Aligned_cols=181 Identities=17% Similarity=0.131 Sum_probs=113.4
Q ss_pred HHHHhCCeeEEEEEeccCCCCceecCCCCC--ccCCcccEEEEcCeeecCCCCCCcccC-----CcccEEEeeeEEECCC
Q 045124 109 VRGWTNNVVEVDIRVDNINEDNFLDLPSNL--CTSTALEVLKLQGNITLDPDPDQRVIF-----PSLRILHMDVIQLGVS 181 (390)
Q Consensus 109 ~~~~~~~v~~L~L~~~~~~~~~~~~lp~~l--~~c~~L~~L~L~~~~~~~~~~~~~~~~-----~~Lk~L~L~~v~~~~~ 181 (390)
......++++|+|..+. -...+|..+ ..+++|++|+|+++.+...| .....+ ++|++|+|++..+.+
T Consensus 90 ~~~~l~~L~~L~L~~n~----l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~- 163 (312)
T 1wwl_A 90 RVLGISGLQELTLENLE----VTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLN- 163 (312)
T ss_dssp HHHTTSCCCEEEEEEEB----CBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCC-
T ss_pred HhcCcCCccEEEccCCc----ccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCcc-
Confidence 33345789999998762 223566665 56899999999999876654 233444 899999999888764
Q ss_pred chHhHhhhcCCccceEEEeceecCCC----CeeEE-EEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeee
Q 045124 182 GHHRDLYRCCPVLDDLYVRGNIAEPL----PFQFD-VVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRE 256 (390)
Q Consensus 182 ~~l~~ll~~cp~Le~L~l~~c~~~~~----~~~l~-i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~ 256 (390)
.....+..++.|++|++.+|..... .. +. -..++|+.|.+ .++.+.........+.-..++|+.|++++
T Consensus 164 -~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l~~L~~L~L----~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 164 -FSCEQVRVFPALSTLDLSDNPELGERGLISA-LCPLKFPTLQVLAL----RNAGMETPSGVCSALAAARVQLQGLDLSH 237 (312)
T ss_dssp -CCTTTCCCCSSCCEEECCSCTTCHHHHHHHH-SCTTSCTTCCEEEC----TTSCCCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred -chHHHhccCCCCCEEECCCCCcCcchHHHHH-HHhccCCCCCEEEC----CCCcCcchHHHHHHHHhcCCCCCEEECCC
Confidence 2234567899999999999874110 00 10 13478999999 67765421000001111347899999987
Q ss_pred cccce----eeeccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccc
Q 045124 257 NFFAQ----YILRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 257 ~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
..... ..+..+++|+.++++.+.....+ .-+. ++|+.|+++....
T Consensus 238 N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip---------------~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP---------------KGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp SCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC---------------SSCC--SEEEEEECCSSCC
T ss_pred CcCCcccchhhhhhcCCCCEEECCCCccChhh---------------hhcc--CCceEEECCCCCC
Confidence 54311 33456788998888544311111 1111 7888888887654
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.22 E-value=2.4e-07 Score=83.39 Aligned_cols=151 Identities=19% Similarity=0.066 Sum_probs=103.3
Q ss_pred hCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 113 TNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 113 ~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
..+++.|++..+.. .. ++.+..+++|++|+|++|.+...++.....+++|++|+|.++.+.. .....+..++
T Consensus 62 l~~L~~L~l~~n~l-----~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~ 133 (272)
T 3rfs_A 62 LPNVRYLALGGNKL-----HD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS--LPDGVFDKLT 133 (272)
T ss_dssp CTTCCEEECTTSCC-----CC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCT
T ss_pred CCCCcEEECCCCCC-----CC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCc--cCHHHhccCC
Confidence 46888898865421 12 2356778999999999998877765456789999999999887763 3344577899
Q ss_pred ccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc---eeeeccCCc
Q 045124 193 VLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA---QYILRNLNL 269 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~---~~~~~~~~~ 269 (390)
.|+.|++.+|.........--..++|+.|.+ .+|.+... .....-..++|+.|+++++... ...+.++++
T Consensus 134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l----~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDL----SYNQLQSL---PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC----CSSCCCCC---CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred CCCEEECCCCccCccCHHHhccCccCCEEEC----CCCCcCcc---CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 9999999999764322100013578999999 67765432 0111124688999999885432 223678899
Q ss_pred ceeEEeeee
Q 045124 270 LEKADIGIG 278 (390)
Q Consensus 270 L~~l~l~~~ 278 (390)
|+.+++..+
T Consensus 207 L~~L~l~~N 215 (272)
T 3rfs_A 207 LQYIWLHDN 215 (272)
T ss_dssp CCEEECCSS
T ss_pred CCEEEccCC
Confidence 999988543
No 66
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.20 E-value=5.2e-07 Score=91.26 Aligned_cols=82 Identities=11% Similarity=0.165 Sum_probs=43.9
Q ss_pred CeeEEEEEeccCCCCceecCCCCCccCCc-ccEEEEcCeeecCCCCCCcc--cCCcccEEEeeeEEECCCchHhHhhh--
Q 045124 115 NVVEVDIRVDNINEDNFLDLPSNLCTSTA-LEVLKLQGNITLDPDPDQRV--IFPSLRILHMDVIQLGVSGHHRDLYR-- 189 (390)
Q Consensus 115 ~v~~L~L~~~~~~~~~~~~lp~~l~~c~~-L~~L~L~~~~~~~~~~~~~~--~~~~Lk~L~L~~v~~~~~~~l~~ll~-- 189 (390)
++++|++..+ ....+|..+..+++ |++|+|+++.+..+|. ... .+++|++|+|++..+.+ .+..-+.
T Consensus 354 ~L~~L~L~~N-----~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~~ 425 (636)
T 4eco_A 354 KLASLNLAYN-----QITEIPANFCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSVMSAIDFSYNEIGS--VDGKNFDPL 425 (636)
T ss_dssp EESEEECCSS-----EEEECCTTSEEECTTCCEEECCSSCCSSCCS-CCCTTCSSCEEEEECCSSCTTT--TTTCSSCTT
T ss_pred CCCEEECCCC-----ccccccHhhhhhcccCcEEEccCCcCcccch-hhhhcccCccCEEECcCCcCCC--cchhhhccc
Confidence 4555555433 22366777777777 7777777776655552 112 23366666666655542 1111122
Q ss_pred -----cCCccceEEEeceec
Q 045124 190 -----CCPVLDDLYVRGNIA 204 (390)
Q Consensus 190 -----~cp~Le~L~l~~c~~ 204 (390)
.++.|+.|++.+|..
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l 445 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQI 445 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCC
T ss_pred ccccccCCCCCEEECcCCcc
Confidence 445666666665554
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.19 E-value=2.7e-07 Score=86.21 Aligned_cols=162 Identities=18% Similarity=0.122 Sum_probs=111.4
Q ss_pred eecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCee
Q 045124 131 FLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQ 210 (390)
Q Consensus 131 ~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~ 210 (390)
...+|..+. ++|++|+|+++.+...++.....+++|++|+|++..+.+ .....+..++.|++|++.+|....+..
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~- 117 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT--IEEDSFSSLGSLEHLDLSYNYLSNLSS- 117 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCSSCCH-
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc--cCHhhcCCCCCCCEEECCCCcCCcCCH-
Confidence 446676554 589999999998776665457789999999999887653 223457789999999999997644332
Q ss_pred EEE-EccceeEEEeeeeeccCCCCCCCCCcc-eEEEecCccceEEeeecc-cce---eeeccCCcceeEEeeeeeeeecC
Q 045124 211 FDV-VSTSVRNLNSEFYLEDKHFDNEDNVSL-TFEINTQNLVCLELRENF-FAQ---YILRNLNLLEKADIGIGGVFMCP 284 (390)
Q Consensus 211 l~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~-~~~i~ap~L~~L~~~~~~-~~~---~~~~~~~~L~~l~l~~~~~~~~~ 284 (390)
-.+ ..++|+.|.+ .++..... .. ...-..++|++|+++++. ... ..+.++++|+++++..+.....
T Consensus 118 ~~~~~l~~L~~L~L----~~n~l~~l---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~- 189 (353)
T 2z80_A 118 SWFKPLSSLTFLNL----LGNPYKTL---GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY- 189 (353)
T ss_dssp HHHTTCTTCSEEEC----TTCCCSSS---CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-
T ss_pred hHhCCCccCCEEEC----CCCCCccc---CchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-
Confidence 101 3578999999 66665432 01 122367899999998863 212 2467888999998865431111
Q ss_pred CCCccCCCccHHHHHhhhccCCCccEEEEecccc
Q 045124 285 RGGGFDFDHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 285 ~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
....+..+++|+.|.++....
T Consensus 190 -------------~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 190 -------------EPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp -------------CTTTTTTCSEEEEEEEECSCS
T ss_pred -------------CHHHHhccccCCeecCCCCcc
Confidence 122356789999999988643
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.19 E-value=3.9e-08 Score=95.30 Aligned_cols=215 Identities=16% Similarity=0.053 Sum_probs=100.5
Q ss_pred CCCCccCCcccEEEEcCeeecCCC-----CCCcccCCcccEEEeeeEEECCCch---HhHhhhcCCccceEEEeceecCC
Q 045124 135 PSNLCTSTALEVLKLQGNITLDPD-----PDQRVIFPSLRILHMDVIQLGVSGH---HRDLYRCCPVLDDLYVRGNIAEP 206 (390)
Q Consensus 135 p~~l~~c~~L~~L~L~~~~~~~~~-----~~~~~~~~~Lk~L~L~~v~~~~~~~---l~~ll~~cp~Le~L~l~~c~~~~ 206 (390)
+..+..+++|++|+|++|.+.+.. +.....+++|++|+|+++.+.+ .. +...+..|+.|++|++.+|...+
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA-KGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH-HHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH-HHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 333344556666666655432110 0011135566666666655543 22 34444556666666666654311
Q ss_pred CCeeEEE------EccceeEEEeeeeeccCCCCCCCCCc---ceEEEecCccceEEeeecccce---eeec-----cCCc
Q 045124 207 LPFQFDV------VSTSVRNLNSEFYLEDKHFDNEDNVS---LTFEINTQNLVCLELRENFFAQ---YILR-----NLNL 269 (390)
Q Consensus 207 ~~~~l~i------~~~~L~~L~i~~~~~~~~~~~~~~~~---~~~~i~ap~L~~L~~~~~~~~~---~~~~-----~~~~ 269 (390)
... ..+ ..++|+.|.+ .+|.+... +. .......++|+.|+++++.... ..+. ..++
T Consensus 299 ~~~-~~l~~~l~~~~~~L~~L~L----~~n~l~~~--~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 299 EGA-RLLCETLLEPGCQLESLWV----KSCSFTAA--CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp HHH-HHHHHHHTSTTCCCCEEEC----TTSCCBGG--GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred HHH-HHHHHHhccCCccceeeEc----CCCCCchH--HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence 000 000 1146666666 55544321 00 0001123666666666542211 1111 1456
Q ss_pred ceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccccccCCCCCCcccccccCCCccchhhcccceE
Q 045124 270 LEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTVGEAKGEFPDCVQRWEERDVPADCLRNCLRGI 349 (390)
Q Consensus 270 L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v 349 (390)
|++++++.+.. .......+...+..+|+|+.|.+++...... ......+ ..+.. ...|+.+
T Consensus 372 L~~L~L~~n~i----------~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~------~~~~l~~--~l~~~-~~~L~~L 432 (461)
T 1z7x_W 372 LRVLWLADCDV----------SDSSCSSLAATLLANHSLRELDLSNNCLGDA------GILQLVE--SVRQP-GCLLEQL 432 (461)
T ss_dssp CCEEECTTSCC----------CHHHHHHHHHHHHHCCCCCEEECCSSSCCHH------HHHHHHH--HHTST-TCCCCEE
T ss_pred eEEEECCCCCC----------ChhhHHHHHHHHHhCCCccEEECCCCCCCHH------HHHHHHH--HhccC-Ccchhhe
Confidence 66666643310 0111235666677788888888877644210 0000000 01111 2358888
Q ss_pred EEEecCCchhHHHHHHHHHhcccccce
Q 045124 350 SVRGFGGKLHELQVIEYLLKNARVLRR 376 (390)
Q Consensus 350 ~i~~~~g~~~e~~~~~~ll~~a~~Le~ 376 (390)
.+.+......-.+.++.+.+.-|.|+-
T Consensus 433 ~~~~~~~~~~~~~~l~~l~~~~p~l~i 459 (461)
T 1z7x_W 433 VLYDIYWSEEMEDRLQALEKDKPSLRV 459 (461)
T ss_dssp ECTTCCCCHHHHHHHHHHHHHCTTSEE
T ss_pred eecccccCHHHHHHHHHHhccCCCcEe
Confidence 877766665555667777777776654
No 69
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.19 E-value=1e-07 Score=77.40 Aligned_cols=108 Identities=17% Similarity=0.064 Sum_probs=72.2
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.++++|++..+.. ....+|..+..+++|+.|++++|.+...+ ....+++|++|+|++..+.+ .+...+..++.
T Consensus 17 ~~l~~L~l~~n~l---~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRS---NEGKLEGLTDEFEELEFLSTINVGLTSIA--NLPKLNKLKKLELSDNRVSG--GLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCBC---BTTBCCSCCTTCTTCCEEECTTSCCCCCT--TCCCCTTCCEEECCSSCCCS--CTHHHHHHCTT
T ss_pred ccCeEEEccCCcC---ChhHHHHHHhhcCCCcEEECcCCCCCCch--hhhcCCCCCEEECCCCcccc--hHHHHhhhCCC
Confidence 4677777754411 11356776677888999999888766553 66778889999998887764 26667777888
Q ss_pred cceEEEeceecCCCCe-eEEEEccceeEEEeeeeeccCCC
Q 045124 194 LDDLYVRGNIAEPLPF-QFDVVSTSVRNLNSEFYLEDKHF 232 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~-~l~i~~~~L~~L~i~~~~~~~~~ 232 (390)
|+.|++.+|...+... ..--..++|+.|.+ .+|.+
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l----~~N~l 125 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDL----FNCEV 125 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEEC----TTCGG
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeC----cCCcc
Confidence 9999888887643210 00013467777777 55554
No 70
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.18 E-value=7.2e-07 Score=88.70 Aligned_cols=143 Identities=15% Similarity=0.026 Sum_probs=75.7
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.+++.|++..+ ....+|..+..+ +|++|++.+|.+..+| ...+++|++|++.+..+... +.. ..+|.
T Consensus 282 ~~L~~L~l~~~-----~l~~l~~~~~~~-~L~~L~l~~n~~~~l~---~~~l~~L~~L~l~~n~~~~~--~~~--~~~~~ 348 (570)
T 2z63_A 282 TNVSSFSLVSV-----TIERVKDFSYNF-GWQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKGGNA--FSE--VDLPS 348 (570)
T ss_dssp TTCSEEEEESC-----EECSCCBCCSCC-CCSEEEEESCBCSSCC---BCBCSSCCEEEEESCBSCCB--CCC--CBCTT
T ss_pred CcccEEEecCc-----cchhhhhhhccC-CccEEeeccCcccccC---cccccccCEEeCcCCccccc--ccc--ccCCC
Confidence 45666666543 123466666666 7888888777765554 24667777777776654431 111 46777
Q ss_pred cceEEEeceecCCCCeeEE---EEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc----ceeeecc
Q 045124 194 LDDLYVRGNIAEPLPFQFD---VVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF----AQYILRN 266 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~~l~---i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~----~~~~~~~ 266 (390)
|+.|++.+|....... .. ...++|+.|.+ .+|..... .......++|++|+++++.. ....+.+
T Consensus 349 L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~l----~~n~l~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGC-CSQSDFGTTSLKYLDL----SFNGVITM----SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp CCEEECCSSCCBEEEE-EEHHHHTCSCCCEEEC----CSCSEEEE----EEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred CCEEeCcCCccCcccc-ccccccccCccCEEEC----CCCccccc----cccccccCCCCEEEccCCccccccchhhhhc
Confidence 7777777665321100 00 02356777777 45443211 11123556666666655321 1123445
Q ss_pred CCcceeEEeeee
Q 045124 267 LNLLEKADIGIG 278 (390)
Q Consensus 267 ~~~L~~l~l~~~ 278 (390)
+++|+.+++..+
T Consensus 420 l~~L~~L~l~~n 431 (570)
T 2z63_A 420 LRNLIYLDISHT 431 (570)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEeCcCC
Confidence 566666655433
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.17 E-value=4.9e-08 Score=92.52 Aligned_cols=188 Identities=15% Similarity=0.086 Sum_probs=91.3
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCC----cccC---------CcccEEEeeeEEECC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQ----RVIF---------PSLRILHMDVIQLGV 180 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~----~~~~---------~~Lk~L~L~~v~~~~ 180 (390)
.++++|+|..+.........+|..+..+++|++|+|++|.+....... ...+ ++|++|+|+++.+.+
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 466777775542222222235555556677777777776542111000 1112 677777777776653
Q ss_pred CchHh---HhhhcCCccceEEEeceecCCCC-------eeEEEEccceeEEEeeeeeccCCCCCCC-CCcceEEEecCcc
Q 045124 181 SGHHR---DLYRCCPVLDDLYVRGNIAEPLP-------FQFDVVSTSVRNLNSEFYLEDKHFDNED-NVSLTFEINTQNL 249 (390)
Q Consensus 181 ~~~l~---~ll~~cp~Le~L~l~~c~~~~~~-------~~l~i~~~~L~~L~i~~~~~~~~~~~~~-~~~~~~~i~ap~L 249 (390)
..+. ..+..++.|+.|.+.+|...+.. . + ...++|+.|.+ .+|.+.... .......-..|+|
T Consensus 174 -~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~-l-~~~~~L~~L~L----s~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 174 -GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG-L-AYCQELKVLDL----QDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp -GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT-G-GGCTTCCEEEC----CSSCCHHHHHHHHHHHGGGCTTC
T ss_pred -HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH-h-hcCCCccEEEC----cCCCCCcHHHHHHHHHHccCCCc
Confidence 3333 45556777777777776542100 0 0 13456777777 455432000 0000111245667
Q ss_pred ceEEeeecccce-------eee--ccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhh-ccCCCccEEEEecccc
Q 045124 250 VCLELRENFFAQ-------YIL--RNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFL-PEVYNVNSLALSGCTV 318 (390)
Q Consensus 250 ~~L~~~~~~~~~-------~~~--~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL-~~~p~L~~L~l~~~~~ 318 (390)
+.|+++++.... ..+ +++++|+.+++..+... ......+...+ ..+|+|+.|.+++...
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~----------~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE----------LDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB----------HHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC----------HHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 777776543211 112 23666776666433200 00011244444 4467777777766644
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.17 E-value=1.5e-07 Score=85.63 Aligned_cols=149 Identities=18% Similarity=0.092 Sum_probs=77.7
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.+++.|+|..+. -....|..+..+++|+.|+|+++.+...+ ....+++|++|+|++..+.. +...+..++.
T Consensus 31 ~~l~~L~L~~N~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~---l~~~~~~l~~ 101 (290)
T 1p9a_G 31 KDTTILHLSENL----LYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQS---LPLLGQTLPA 101 (290)
T ss_dssp TTCCEEECTTSC----CSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCSS---CCCCTTTCTT
T ss_pred CCCCEEEcCCCc----CCccCHHHhhcCCCCCEEECCCCccCccc--CCCCCCcCCEEECCCCcCCc---CchhhccCCC
Confidence 456666664331 11112334455677777777776655444 23567777777777666542 3344556777
Q ss_pred cceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccce---eeeccCCcc
Q 045124 194 LDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQ---YILRNLNLL 270 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~---~~~~~~~~L 270 (390)
|+.|++.++....+....--..++|+.|.+ .++..... .....-..++|+.|+++++.... ..+.++++|
T Consensus 102 L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L----~~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 102 LTVLDVSFNRLTSLPLGALRGLGELQELYL----KGNELKTL---PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174 (290)
T ss_dssp CCEEECCSSCCCCCCSSTTTTCTTCCEEEC----TTSCCCCC---CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred CCEEECCCCcCcccCHHHHcCCCCCCEEEC----CCCCCCcc---ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence 777777776553221100012356777777 55544321 00111134667777776643211 124556677
Q ss_pred eeEEeeee
Q 045124 271 EKADIGIG 278 (390)
Q Consensus 271 ~~l~l~~~ 278 (390)
+.+++...
T Consensus 175 ~~L~L~~N 182 (290)
T 1p9a_G 175 DTLLLQEN 182 (290)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 77766543
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.17 E-value=5.6e-07 Score=88.04 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=91.6
Q ss_pred cCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEcccee
Q 045124 140 TSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVR 219 (390)
Q Consensus 140 ~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~ 219 (390)
.+++|+.|+|+++.+...++.....+++|++|+|+++.+.+... +..++.|+.|+|++|.... +. ..++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~----l~-~~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQE----LL-VGPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSEEEE----EE-ECTTCC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCcCCC----CC-CCCCcC
Confidence 45699999999998877765567789999999999987764121 7889999999999997532 32 458999
Q ss_pred EEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc---ceeeeccCCcceeEEeeee
Q 045124 220 NLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF---AQYILRNLNLLEKADIGIG 278 (390)
Q Consensus 220 ~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~---~~~~~~~~~~L~~l~l~~~ 278 (390)
.|.+ .+|.+.. ......|+|+.|+++++.. ....+.++++|+.++++.+
T Consensus 103 ~L~L----~~N~l~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 103 TLHA----ANNNISR------VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp EEEC----CSSCCCC------EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS
T ss_pred EEEC----cCCcCCC------CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC
Confidence 9999 7777643 2233568999999988642 2345788999999998654
No 74
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.17 E-value=1.2e-07 Score=95.33 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=42.6
Q ss_pred CeeEEEEEeccCCCCceecCCCC-CccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 115 NVVEVDIRVDNINEDNFLDLPSN-LCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 115 ~v~~L~L~~~~~~~~~~~~lp~~-l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.++.|++..+ ....+|+. +..+++|+.|+|+++.+..+|. ....+++|++|+|.++.+.. .....+..+|.
T Consensus 255 ~L~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~ 326 (606)
T 3t6q_A 255 SVESINLQKH-----YFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFEN--LCQISASNFPS 326 (606)
T ss_dssp EEEEEECTTC-----CCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSB--GGGGCGGGCTT
T ss_pred ceeEEEeecC-----ccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCc--CchhhhhccCc
Confidence 4566665433 11233333 3445666666666665555542 34456666666666665542 22334455666
Q ss_pred cceEEEecee
Q 045124 194 LDDLYVRGNI 203 (390)
Q Consensus 194 Le~L~l~~c~ 203 (390)
|+.|++.+|.
T Consensus 327 L~~L~l~~n~ 336 (606)
T 3t6q_A 327 LTHLSIKGNT 336 (606)
T ss_dssp CSEEECCSCS
T ss_pred CCEEECCCCC
Confidence 6666666654
No 75
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.17 E-value=4.7e-08 Score=91.89 Aligned_cols=238 Identities=15% Similarity=0.062 Sum_probs=129.4
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCC-cccEEEEcCeeecCCCCCCccc-----CCcccEEEeeeEEECCC--chHh
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTST-ALEVLKLQGNITLDPDPDQRVI-----FPSLRILHMDVIQLGVS--GHHR 185 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~-~L~~L~L~~~~~~~~~~~~~~~-----~~~Lk~L~L~~v~~~~~--~~l~ 185 (390)
+++++|+|..+.........+-..+..++ +|++|+|++|.+.+........ +++|++|+|+++.+.+. ..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 46888888655221111111112334456 8999999998765443212223 38999999999888652 3455
Q ss_pred HhhhcC-CccceEEEeceecCCCCeeEEE----E--ccceeEEEeeeeeccCCCCCCCCCcceE---EEec-CccceEEe
Q 045124 186 DLYRCC-PVLDDLYVRGNIAEPLPFQFDV----V--STSVRNLNSEFYLEDKHFDNEDNVSLTF---EINT-QNLVCLEL 254 (390)
Q Consensus 186 ~ll~~c-p~Le~L~l~~c~~~~~~~~l~i----~--~~~L~~L~i~~~~~~~~~~~~~~~~~~~---~i~a-p~L~~L~~ 254 (390)
..+..+ +.|+.|+|.+|...+... -.+ . .++|+.|.+ .+|.+... +...+ .... ++|++|++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~L----s~N~l~~~--~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSS-SEFKQAFSNLPASITSLNL----RGNDLGIK--SSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCH-HHHHHHHTTSCTTCCEEEC----TTSCGGGS--CHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHhCCCCccEEECcCCcCCcHHH-HHHHHHHHhCCCceeEEEc----cCCcCCHH--HHHHHHHHHhcCCccccEeee
Confidence 556666 899999999987643221 001 1 258999999 67765421 11111 0123 38999999
Q ss_pred eeccccee-------eeccC-CcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhcc-CCCccEEEEecccccccCCCC
Q 045124 255 RENFFAQY-------ILRNL-NLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPE-VYNVNSLALSGCTVGEAKGEF 325 (390)
Q Consensus 255 ~~~~~~~~-------~~~~~-~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~-~p~L~~L~l~~~~~~~~~~~~ 325 (390)
+++..... .+... ++|++++++.+.. .......+...+.. .++|+.|.|+.......
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i----------~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~---- 240 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLL----------GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP---- 240 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG----------GGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC----
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC----------ChhHHHHHHHHHhcCCCCceEEECcCCCCCcH----
Confidence 87543111 23445 4888888854321 11123446666666 56999999988754221
Q ss_pred CCcccccccCCCccchhhcccceEEEEecCCchhHHHHHHHHHhcccccceEE
Q 045124 326 PDCVQRWEERDVPADCLRNCLRGISVRGFGGKLHELQVIEYLLKNARVLRRMD 378 (390)
Q Consensus 326 ~~~~~~w~~~~~~~~c~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~ 378 (390)
....... ... ...+|+.+.+.+-.-..-.-+.+..+....+.++++.
T Consensus 241 --~~~~l~~---~~~-~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 241 --SLENLKL---LKD-SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287 (362)
T ss_dssp --CHHHHHH---TTT-TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred --HHHHHHH---HHh-cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence 0000000 001 2366999988765411111223344444444455444
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.16 E-value=4.9e-07 Score=82.90 Aligned_cols=198 Identities=17% Similarity=0.154 Sum_probs=123.6
Q ss_pred eeEEEEEEccCCChhHHHHHHHHHHhCCeeEEEEEeccCCCCceecCCCCC--ccCCcccEEEEcCeeecCCCC----CC
Q 045124 88 IRRFYLHCLQSYDAEVLRDWVVRGWTNNVVEVDIRVDNINEDNFLDLPSNL--CTSTALEVLKLQGNITLDPDP----DQ 161 (390)
Q Consensus 88 l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~L~~~~~~~~~~~~lp~~l--~~c~~L~~L~L~~~~~~~~~~----~~ 161 (390)
++++.+.-.. .....+...........+++|+|..+ .-....|..+ ..+++|++|+|+++.+....+ ..
T Consensus 66 l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n----~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 66 VRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDL----KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESC----CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred eeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCC----EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 5555554322 23445555556555678999999765 2233455555 668899999999987654221 01
Q ss_pred cccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCC---C--CeeEEEEccceeEEEeeeeeccCCCCCCC
Q 045124 162 RVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEP---L--PFQFDVVSTSVRNLNSEFYLEDKHFDNED 236 (390)
Q Consensus 162 ~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~---~--~~~l~i~~~~L~~L~i~~~~~~~~~~~~~ 236 (390)
...+++|++|+|+++.+.. .....+..++.|+.|+|++|.... . .. ..-..++|+.|.+ .+|.....
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~l~~L~~L~L----s~N~l~~l- 212 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPA--FSCEQVRAFPALTSLDLSDNPGLGERGLMAAL-CPHKFPAIQNLAL----RNTGMETP- 212 (310)
T ss_dssp TTBCSCCCEEEEECCSSCC--CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS-CTTSSCCCCSCBC----CSSCCCCH-
T ss_pred hhhccCCCEEEeeCCCcch--hhHHHhccCCCCCEEECCCCCCccchhhhHHH-hhhcCCCCCEEEC----CCCCCCch-
Confidence 2358999999999988753 334566789999999999986421 0 00 0013578999999 67765321
Q ss_pred CCcce----EEEecCccceEEeeecccc---eeeeccC---CcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCC
Q 045124 237 NVSLT----FEINTQNLVCLELRENFFA---QYILRNL---NLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVY 306 (390)
Q Consensus 237 ~~~~~----~~i~ap~L~~L~~~~~~~~---~~~~~~~---~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p 306 (390)
.. +.-..++|++|+++++... +..+..+ ++|++++++.+.....+. -+ ++
T Consensus 213 ---~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~---------------~~--~~ 272 (310)
T 4glp_A 213 ---TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK---------------GL--PA 272 (310)
T ss_dssp ---HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS---------------CC--CS
T ss_pred ---HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh---------------hh--cC
Confidence 11 1125588999999886431 1224444 789999886543211111 01 37
Q ss_pred CccEEEEecccc
Q 045124 307 NVNSLALSGCTV 318 (390)
Q Consensus 307 ~L~~L~l~~~~~ 318 (390)
+|+.|.++....
T Consensus 273 ~L~~L~Ls~N~l 284 (310)
T 4glp_A 273 KLRVLDLSSNRL 284 (310)
T ss_dssp CCSCEECCSCCC
T ss_pred CCCEEECCCCcC
Confidence 899999888754
No 77
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.15 E-value=1.2e-06 Score=85.03 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=12.8
Q ss_pred hccCCCccEEEEecccc
Q 045124 302 LPEVYNVNSLALSGCTV 318 (390)
Q Consensus 302 L~~~p~L~~L~l~~~~~ 318 (390)
+..+|+|+.|.++....
T Consensus 208 l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp CTTCTTCSEEECCSSCC
T ss_pred cccCCCCCEEECcCCcc
Confidence 55678888888877654
No 78
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.15 E-value=4.4e-06 Score=87.30 Aligned_cols=126 Identities=16% Similarity=0.064 Sum_probs=77.0
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.+++.|+|..+ .-....|..+..+++|+.|+|.++.+...++..+..+++|++|+|++..+.. .....+.++|.
T Consensus 266 ~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~ 339 (844)
T 3j0a_A 266 SSVRHLDLSHG----FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE--LYSSNFYGLPK 339 (844)
T ss_dssp SCCCEEECTTC----CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC--CCSCSCSSCTT
T ss_pred CCccEEECCCC----cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc--cCHHHhcCCCC
Confidence 57888888544 1122234455567888888888887655544456678888888888877653 22345667888
Q ss_pred cceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeec
Q 045124 194 LDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELREN 257 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~ 257 (390)
|+.|++.+|.........--..++|+.|.+ .++..... . ..|+|+.|.++++
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L----s~N~l~~i----~----~~~~L~~L~l~~N 391 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDL----RDNALTTI----H----FIPSIPDIFLSGN 391 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEE----ETCCSCCC----S----SCCSCSEEEEESC
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEEC----CCCCCCcc----c----CCCCcchhccCCC
Confidence 888888887653322100013567888888 55554321 1 1556666666554
No 79
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.14 E-value=9.4e-07 Score=85.68 Aligned_cols=200 Identities=15% Similarity=0.036 Sum_probs=136.2
Q ss_pred hCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 113 TNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 113 ~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
...+++|++..... ..+| .+..+++|++|+|++|.+...+ ...+++|++|+|++..+.+ - . +..++
T Consensus 41 l~~L~~L~Ls~n~l-----~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~-~--~--~~~l~ 106 (457)
T 3bz5_A 41 LATLTSLDCHNSSI-----TDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTN-L--D--VTPLT 106 (457)
T ss_dssp HTTCCEEECCSSCC-----CCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC-C--C--CTTCT
T ss_pred cCCCCEEEccCCCc-----ccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCce-e--e--cCCCC
Confidence 36788898865522 2344 5778899999999999876654 5688999999999988875 2 2 67899
Q ss_pred ccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeec-ccceeeeccCCcce
Q 045124 193 VLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELREN-FFAQYILRNLNLLE 271 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~-~~~~~~~~~~~~L~ 271 (390)
.|+.|++.+|....+.. -..++|+.|.+ ..+..... . .-..++|+.|+++++ ......+.++++|+
T Consensus 107 ~L~~L~L~~N~l~~l~~---~~l~~L~~L~l----~~N~l~~l-----~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~ 173 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKLDV---SQNPLLTYLNC----ARNTLTEI-----D-VSHNTQLTELDCHLNKKITKLDVTPQTQLT 173 (457)
T ss_dssp TCCEEECCSSCCSCCCC---TTCTTCCEEEC----TTSCCSCC-----C-CTTCTTCCEEECTTCSCCCCCCCTTCTTCC
T ss_pred cCCEEECCCCcCCeecC---CCCCcCCEEEC----CCCcccee-----c-cccCCcCCEEECCCCCcccccccccCCcCC
Confidence 99999999997644321 14578999999 67765421 1 225788999999876 33344678889999
Q ss_pred eEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccccccCCCCCCcccccccCCCccchhhcccceEEE
Q 045124 272 KADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTVGEAKGEFPDCVQRWEERDVPADCLRNCLRGISV 351 (390)
Q Consensus 272 ~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v~i 351 (390)
.++++.+.. ..+. +..+++|+.|.+........ ... ...+|+.+.+
T Consensus 174 ~L~ls~n~l---------------~~l~--l~~l~~L~~L~l~~N~l~~~---------------~l~--~l~~L~~L~L 219 (457)
T 3bz5_A 174 TLDCSFNKI---------------TELD--VSQNKLLNRLNCDTNNITKL---------------DLN--QNIQLTFLDC 219 (457)
T ss_dssp EEECCSSCC---------------CCCC--CTTCTTCCEEECCSSCCSCC---------------CCT--TCTTCSEEEC
T ss_pred EEECCCCcc---------------ceec--cccCCCCCEEECcCCcCCee---------------ccc--cCCCCCEEEC
Confidence 998854421 1111 56789999999987644210 011 1267888877
Q ss_pred EecCCchhHHHHHHHHHhcccccceEEEE
Q 045124 352 RGFGGKLHELQVIEYLLKNARVLRRMDIY 380 (390)
Q Consensus 352 ~~~~g~~~e~~~~~~ll~~a~~Le~l~i~ 380 (390)
.+-.-+. +. +.+.+.|+.+.+.
T Consensus 220 s~N~l~~--ip-----~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 220 SSNKLTE--ID-----VTPLTQLTYFDCS 241 (457)
T ss_dssp CSSCCSC--CC-----CTTCTTCSEEECC
T ss_pred cCCcccc--cC-----ccccCCCCEEEee
Confidence 6533221 21 5678889888775
No 80
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.14 E-value=7.1e-07 Score=90.30 Aligned_cols=151 Identities=10% Similarity=0.094 Sum_probs=103.4
Q ss_pred CCeeEEEEEeccCCCCceec-----------------CCCCCc--cCCcccEEEEcCeeecCCCCCCcccCCcccEEEee
Q 045124 114 NNVVEVDIRVDNINEDNFLD-----------------LPSNLC--TSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMD 174 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~-----------------lp~~l~--~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~ 174 (390)
..+++|+|..+.. ... +|..+. .+++|++|+|++|.+....+.....+++|++|+|+
T Consensus 206 ~~L~~L~Ls~n~l----~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 206 TKLRQFYMGNSPF----VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp TTCCEEEEESCCC----CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred cCCCEEECcCCcc----ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 5889999976622 111 899998 99999999999997544333467789999999999
Q ss_pred eEE-ECCCchHhHhh------hcCCccceEEEeceecCCCCeeE-EE-EccceeEEEeeeeeccCCCC-CCCCCcceEEE
Q 045124 175 VIQ-LGVSGHHRDLY------RCCPVLDDLYVRGNIAEPLPFQF-DV-VSTSVRNLNSEFYLEDKHFD-NEDNVSLTFEI 244 (390)
Q Consensus 175 ~v~-~~~~~~l~~ll------~~cp~Le~L~l~~c~~~~~~~~l-~i-~~~~L~~L~i~~~~~~~~~~-~~~~~~~~~~i 244 (390)
++. +.+ ..+..-+ ..|+.|+.|++.+|....+.. . .+ ..++|+.|.+ .++.+. .. ...-
T Consensus 282 ~n~~l~~-~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~-~~~l~~l~~L~~L~L----~~N~l~g~i-----p~~~ 350 (636)
T 4eco_A 282 CNRGISG-EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV-ETSLQKMKKLGMLEC----LYNQLEGKL-----PAFG 350 (636)
T ss_dssp TCTTSCH-HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC-HHHHTTCTTCCEEEC----CSCCCEEEC-----CCCE
T ss_pred CCCCCcc-ccchHHHHhhhccccCCCCCEEECCCCcCCccCc-hhhhccCCCCCEEeC----cCCcCccch-----hhhC
Confidence 987 542 1333333 346999999999997643211 0 11 3478999999 666654 21 1233
Q ss_pred ecCccceEEeeecccc--eeeeccCCc-ceeEEeeeee
Q 045124 245 NTQNLVCLELRENFFA--QYILRNLNL-LEKADIGIGG 279 (390)
Q Consensus 245 ~ap~L~~L~~~~~~~~--~~~~~~~~~-L~~l~l~~~~ 279 (390)
..++|+.|+++++... +..+.++++ |++++++.+.
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc
Confidence 6678999999875432 223667788 9988886543
No 81
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.13 E-value=1.6e-06 Score=89.61 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=82.6
Q ss_pred ccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCC-CCeeEEEEccc
Q 045124 139 CTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEP-LPFQFDVVSTS 217 (390)
Q Consensus 139 ~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-~~~~l~i~~~~ 217 (390)
..+++|++|+|++|.+....+ ....+++|++|+|+++.+.+ .+...+..|+.|+.|++.+|.... ... ...++
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~l~~ 270 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG--DFSRAISTCTELKLLNISSNQFVGPIPP---LPLKS 270 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCC-BCTTCCSCCEEECCSSCCCS--CHHHHTTTCSSCCEEECCSSCCEESCCC---CCCTT
T ss_pred ccCCcCCEEECcCCcCCCCCc-ccccCCCCCEEECcCCcCCC--cccHHHhcCCCCCEEECCCCcccCccCc---cccCC
Confidence 567888888888887654333 36678889999998887763 456667888999999998886521 112 14578
Q ss_pred eeEEEeeeeeccCCCCCCCCCcceEEEe-cCccceEEeeeccc---ceeeeccCCcceeEEeeeee
Q 045124 218 VRNLNSEFYLEDKHFDNEDNVSLTFEIN-TQNLVCLELRENFF---AQYILRNLNLLEKADIGIGG 279 (390)
Q Consensus 218 L~~L~i~~~~~~~~~~~~~~~~~~~~i~-ap~L~~L~~~~~~~---~~~~~~~~~~L~~l~l~~~~ 279 (390)
|+.|.+ .+|.+... . ...... .++|++|+++++.. ....+.++++|+++++..+.
T Consensus 271 L~~L~L----~~n~l~~~--i-p~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 271 LQYLSL----AENKFTGE--I-PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp CCEEEC----CSSEEEES--C-CCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred CCEEEC----cCCccCCc--c-CHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 888888 55544210 0 011112 37788888876532 12346677778777776543
No 82
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=8.6e-07 Score=92.35 Aligned_cols=155 Identities=13% Similarity=0.074 Sum_probs=103.9
Q ss_pred CCeeEEEEEeccCCCCc-----ee---------cCCCCCc--cCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEE
Q 045124 114 NNVVEVDIRVDNINEDN-----FL---------DLPSNLC--TSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQ 177 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~-----~~---------~lp~~l~--~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~ 177 (390)
.+++.|+|..+... .. .. .+|..+. .+++|+.|+|++|.+....+.....+++|+.|+|+++.
T Consensus 448 ~~L~~L~Ls~N~Ls-g~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 448 TKLQIIYFANSPFT-YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp TTCCEEEEESCCCC-GGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCEEECcCCcCC-CCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 57899999766221 00 00 2898887 89999999999997543322367789999999999986
Q ss_pred -ECC---CchHhHh---hhcCCccceEEEeceecCCCCeeE-EE-EccceeEEEeeeeeccCCCCCCCCCcceEEEecCc
Q 045124 178 -LGV---SGHHRDL---YRCCPVLDDLYVRGNIAEPLPFQF-DV-VSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQN 248 (390)
Q Consensus 178 -~~~---~~~l~~l---l~~cp~Le~L~l~~c~~~~~~~~l-~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~ 248 (390)
+.+ +..+..+ +..+|.|+.|+|.+|....+.. . .+ ..++|+.|.+ .++.+... ...-..++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~-~~~l~~L~~L~~L~L----s~N~l~~l-----p~~~~L~~ 596 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA-SASLQKMVKLGLLDC----VHNKVRHL-----EAFGTNVK 596 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC-HHHHTTCTTCCEEEC----TTSCCCBC-----CCCCTTSE
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC-hhhhhcCCCCCEEEC----CCCCcccc-----hhhcCCCc
Confidence 542 1223332 3467799999999998642211 0 01 3578999999 67765422 22236788
Q ss_pred cceEEeeecccc--eeeeccCCc-ceeEEeeeee
Q 045124 249 LVCLELRENFFA--QYILRNLNL-LEKADIGIGG 279 (390)
Q Consensus 249 L~~L~~~~~~~~--~~~~~~~~~-L~~l~l~~~~ 279 (390)
|+.|+++++... +..+.++++ |+.++++.+.
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCC
Confidence 999999886432 223667788 9999886543
No 83
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.12 E-value=1e-06 Score=81.10 Aligned_cols=120 Identities=16% Similarity=0.139 Sum_probs=86.2
Q ss_pred cCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEcccee
Q 045124 140 TSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVR 219 (390)
Q Consensus 140 ~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~ 219 (390)
.+++|++|+|+++.+...++.....+++|++|+|++..+.+.. . +..++.|+.|++.+|.... +. ..++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~-~~~l~~L~~L~Ls~n~l~~----l~-~~~~L~ 102 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---D-LESLSTLRTLDLNNNYVQE----LL-VGPSIE 102 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE---E-ETTCTTCCEEECCSSEEEE----EE-ECTTCC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch---h-hhhcCCCCEEECcCCcccc----cc-CCCCcC
Confidence 3579999999999877665445678999999999988775412 2 7789999999999997522 32 458899
Q ss_pred EEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc---ceeeeccCCcceeEEeeee
Q 045124 220 NLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF---AQYILRNLNLLEKADIGIG 278 (390)
Q Consensus 220 ~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~---~~~~~~~~~~L~~l~l~~~ 278 (390)
.|.+ .++.... ......++|+.|++++... ....+.++++|+.++++.+
T Consensus 103 ~L~l----~~n~l~~------~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 103 TLHA----ANNNISR------VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp EEEC----CSSCCSE------EEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred EEEC----CCCccCC------cCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence 9999 6666532 2233567888888877532 1234567788888877543
No 84
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.11 E-value=6.2e-07 Score=74.29 Aligned_cols=134 Identities=17% Similarity=0.060 Sum_probs=82.5
Q ss_pred CcccEEEEcCeeec--CCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCC-CCeeEEEEccce
Q 045124 142 TALEVLKLQGNITL--DPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEP-LPFQFDVVSTSV 218 (390)
Q Consensus 142 ~~L~~L~L~~~~~~--~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-~~~~l~i~~~~L 218 (390)
++|++|+|++|.+. .+|. ....+++|+.|+|.++.+.+ + ..+..++.|+.|++.+|.... ... +.-..++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~---~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLIS---V-SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCC---C-SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCC---h-hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCC
Confidence 67889999888776 5553 34678889999998887764 2 556778888888888887644 222 11125677
Q ss_pred eEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccceeeeccCCcceeEEeeeeeeeecCCCCccCCCccHHHH
Q 045124 219 RNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQYILRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDER 298 (390)
Q Consensus 219 ~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l 298 (390)
+.|.+ .+|.+... . ....+.++++|+.+++..+..... ....
T Consensus 98 ~~L~L----s~N~l~~~----~-------------------~~~~l~~l~~L~~L~l~~N~l~~~-----------~~~~ 139 (168)
T 2ell_A 98 THLNL----SGNKLKDI----S-------------------TLEPLKKLECLKSLDLFNCEVTNL-----------NDYR 139 (168)
T ss_dssp CEEEC----BSSSCCSS----G-------------------GGGGGSSCSCCCEEECCSSGGGTS-----------TTHH
T ss_pred CEEec----cCCccCcc----h-------------------hHHHHhcCCCCCEEEeeCCcCcch-----------HHHH
Confidence 77777 55554321 0 012344556666665543221000 0112
Q ss_pred HhhhccCCCccEEEEeccccc
Q 045124 299 ISFLPEVYNVNSLALSGCTVG 319 (390)
Q Consensus 299 ~~lL~~~p~L~~L~l~~~~~~ 319 (390)
...+..+|+|+.|.+......
T Consensus 140 ~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 140 ESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHHTTCSSCCEETTEETTSC
T ss_pred HHHHHhCccCcEecCCCCChh
Confidence 235778889999988887653
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.05 E-value=1.5e-06 Score=79.59 Aligned_cols=182 Identities=15% Similarity=0.032 Sum_probs=99.8
Q ss_pred hCCeeEEEEEeccCCCCceecCC-CCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHh--Hhhh
Q 045124 113 TNNVVEVDIRVDNINEDNFLDLP-SNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHR--DLYR 189 (390)
Q Consensus 113 ~~~v~~L~L~~~~~~~~~~~~lp-~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~--~ll~ 189 (390)
..++++|+|..+... .....++ ..+..+++|++|+|++|.+...++.....+++|++|+|++..+.+...+. ..+.
T Consensus 116 ~~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 116 GLALSSLRLRNVSWA-TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CBCCSSCEEESCCCS-STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred CCCCCEEEeeccccc-chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 356777887655221 0000011 12235678888888888776665445667888888888877654212222 2235
Q ss_pred cCCccceEEEeceecCCCCeeE----EEEccceeEEEeeeeeccCCCCCCCCCcceEEE--ecCccceEEeeecccceee
Q 045124 190 CCPVLDDLYVRGNIAEPLPFQF----DVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEI--NTQNLVCLELRENFFAQYI 263 (390)
Q Consensus 190 ~cp~Le~L~l~~c~~~~~~~~l----~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i--~ap~L~~L~~~~~~~~~~~ 263 (390)
.+|+|++|+|.+|....+.. . .-..++|+.|.+ .++.+... .+..+.- ..|+|++|+++++......
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~-~~~~l~~~l~~L~~L~L----s~N~l~~~--~p~~~~~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTG-VCAALAAAGVQPHSLDL----SHNSLRAT--VNPSAPRCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHH-HHHHHHHHTCCCSSEEC----TTSCCCCC--CCSCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred cCCCCCEEECCCCCCCchHH-HHHHHHhcCCCCCEEEC----CCCCCCcc--chhhHHhccCcCcCCEEECCCCCCCchh
Confidence 67888888888876532211 1 002367888888 55554321 0011111 1267888888775432111
Q ss_pred eccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccc
Q 045124 264 LRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 264 ~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
-.-.++|++++++.+... .+ ..+..+|+|+.|.+++-..
T Consensus 268 ~~~~~~L~~L~Ls~N~l~---------------~~-~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 268 KGLPAKLRVLDLSSNRLN---------------RA-PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCCSCCSCEECCSCCCC---------------SC-CCTTSCCCCSCEECSSTTT
T ss_pred hhhcCCCCEEECCCCcCC---------------CC-chhhhCCCccEEECcCCCC
Confidence 111367777777543311 11 1245678999999887644
No 86
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.04 E-value=2.6e-07 Score=91.98 Aligned_cols=176 Identities=12% Similarity=0.035 Sum_probs=97.4
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCC--CCCcccCCcccEEEeeeEEECCCchHhHhhhcC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPD--PDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCC 191 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~--~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~c 191 (390)
.+++.|++..+.. ....+. ..+++|+.|++++|.+.... +.....+++|++|+|+++.+.+ +..-+..|
T Consensus 325 ~~L~~L~l~~n~~----~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~l 395 (570)
T 2z63_A 325 KSLKRLTFTSNKG----GNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT---MSSNFLGL 395 (570)
T ss_dssp SSCCEEEEESCBS----CCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE---EEEEEETC
T ss_pred cccCEEeCcCCcc----cccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc---cccccccc
Confidence 5778888865511 112222 56788888888877653321 1134567888888888766543 11115678
Q ss_pred CccceEEEeceecCCCCe-eEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc----ceeeecc
Q 045124 192 PVLDDLYVRGNIAEPLPF-QFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF----AQYILRN 266 (390)
Q Consensus 192 p~Le~L~l~~c~~~~~~~-~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~----~~~~~~~ 266 (390)
+.|+.|++.+|....... ..--..++|+.|.+ .+|..... .....-..++|+.|+++++.. .+..+.+
T Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l----~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI----SHTHTRVA---FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp TTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC----TTSCCEEC---CTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred CCCCEEEccCCccccccchhhhhcCCCCCEEeC----cCCccccc---chhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 888888888776522110 00013467888888 55543211 001112456778887776432 1234667
Q ss_pred CCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEeccccc
Q 045124 267 LNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTVG 319 (390)
Q Consensus 267 ~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~ 319 (390)
+++|+.++++.+..... ....+..+|+|+.|.|+.....
T Consensus 469 l~~L~~L~l~~n~l~~~--------------~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQL--------------SPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp CTTCCEEECTTSCCCEE--------------CTTTTTTCTTCCEEECCSSCCS
T ss_pred ccCCCEEECCCCccccC--------------ChhhhhcccCCCEEeCCCCcCC
Confidence 77788777754321110 0122455677777777666544
No 87
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.04 E-value=1.5e-06 Score=83.91 Aligned_cols=86 Identities=12% Similarity=0.003 Sum_probs=50.0
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecC--CCCCCcccCCcccEEEeeeEEECCCchHhHhhhcC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLD--PDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCC 191 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~--~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~c 191 (390)
.++++|+|..+ .-....|..+..+++|++|+|++|.+.. ........+++|++|+|++..+.+ ..-..++..+
T Consensus 79 ~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l 153 (455)
T 3v47_A 79 SSLIILKLDYN----QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASFFLNM 153 (455)
T ss_dssp TTCCEEECTTC----TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS-CCCCGGGGGC
T ss_pred ccCCEEeCCCC----ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc-cCcccccCCC
Confidence 46677777543 1122235555667777777777776533 111124567777777777766653 2223346667
Q ss_pred CccceEEEeceec
Q 045124 192 PVLDDLYVRGNIA 204 (390)
Q Consensus 192 p~Le~L~l~~c~~ 204 (390)
+.|++|++.+|..
T Consensus 154 ~~L~~L~L~~n~l 166 (455)
T 3v47_A 154 RRFHVLDLTFNKV 166 (455)
T ss_dssp TTCCEEECTTCCB
T ss_pred CcccEEeCCCCcc
Confidence 7777777777654
No 88
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.03 E-value=2.2e-06 Score=79.28 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=11.9
Q ss_pred hccCCCccEEEEecccc
Q 045124 302 LPEVYNVNSLALSGCTV 318 (390)
Q Consensus 302 L~~~p~L~~L~l~~~~~ 318 (390)
+..+|+|+.|.++....
T Consensus 260 l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp GGGCTTCCEEECCSSCC
T ss_pred hhcCccCCEEECCCCCC
Confidence 56677788887776644
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.03 E-value=7e-07 Score=78.52 Aligned_cols=129 Identities=17% Similarity=0.183 Sum_probs=80.6
Q ss_pred hCCeeEEEEEeccCCCCceecCCC-CCccCCcccEEEEcC-eeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhc
Q 045124 113 TNNVVEVDIRVDNINEDNFLDLPS-NLCTSTALEVLKLQG-NITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRC 190 (390)
Q Consensus 113 ~~~v~~L~L~~~~~~~~~~~~lp~-~l~~c~~L~~L~L~~-~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~ 190 (390)
..+++.|++..+ .....+|+ .+..+++|++|+|.+ +.+...++..+..+++|++|+|.+..+.. +.. +..
T Consensus 54 l~~L~~L~l~~n----~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~---lp~-~~~ 125 (239)
T 2xwt_C 54 LPNISRIYVSID----VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM---FPD-LTK 125 (239)
T ss_dssp CTTCCEEEEECC----SSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS---CCC-CTT
T ss_pred CCCCcEEeCCCC----CCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc---ccc-ccc
Confidence 367899999755 11234555 455789999999998 66655554466789999999999998764 333 678
Q ss_pred CCccc---eEEEece-ecCCCCeeEEEEcccee-EEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeec
Q 045124 191 CPVLD---DLYVRGN-IAEPLPFQFDVVSTSVR-NLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELREN 257 (390)
Q Consensus 191 cp~Le---~L~l~~c-~~~~~~~~l~i~~~~L~-~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~ 257 (390)
++.|+ .|++.++ ....+....--..++|+ .|.+ .++.+... ....+..++|+.|++++.
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l----~~n~l~~i----~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL----YNNGFTSV----QGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC----CSCCCCEE----CTTTTTTCEEEEEECTTC
T ss_pred ccccccccEEECCCCcchhhcCcccccchhcceeEEEc----CCCCCccc----CHhhcCCCCCCEEEcCCC
Confidence 88998 9999988 43211100001246777 8888 55543211 000112245666666554
No 90
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.02 E-value=1.3e-06 Score=76.33 Aligned_cols=135 Identities=18% Similarity=0.093 Sum_probs=80.6
Q ss_pred eecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCee
Q 045124 131 FLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQ 210 (390)
Q Consensus 131 ~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~ 210 (390)
...+|..+. ++|+.|+|+++.+...++.....+++|++|+|++..+.. .-...+..++.|+.|+|.+|....+...
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cChhhcccCCCcCEEECCCCcCCccChh
Confidence 344555332 678888888777666554456677888888888776643 2224456778888888887765332210
Q ss_pred EEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccce---eeeccCCcceeEEeee
Q 045124 211 FDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQ---YILRNLNLLEKADIGI 277 (390)
Q Consensus 211 l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~---~~~~~~~~L~~l~l~~ 277 (390)
.--..++|+.|.+ .++.+... .......++|+.|+++++.... ..+..+++|+.+++..
T Consensus 107 ~~~~l~~L~~L~L----s~N~l~~l----p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 107 VFDRLVHLKELFM----CCNKLTEL----PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp TTTTCTTCCEEEC----CSSCCCSC----CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred HhCcchhhCeEec----cCCccccc----CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 0013467888888 55554321 1111355778888887754321 2356778888887743
No 91
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.01 E-value=7.5e-07 Score=72.18 Aligned_cols=81 Identities=15% Similarity=0.079 Sum_probs=54.5
Q ss_pred CcccEEEEcCeeec--CCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCC-CCeeEEEEccce
Q 045124 142 TALEVLKLQGNITL--DPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEP-LPFQFDVVSTSV 218 (390)
Q Consensus 142 ~~L~~L~L~~~~~~--~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-~~~~l~i~~~~L 218 (390)
++|++|++++|.+. ..|. ....+++|+.|+|+++.+.+ - ..+..++.|+.|++.+|.... ... ..-..++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~-~---~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTS-I---ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCC-C---TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCC-c---hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCC
Confidence 67888888888765 4552 44678888888888877764 2 556778888888888887643 222 11125677
Q ss_pred eEEEeeeeeccCCC
Q 045124 219 RNLNSEFYLEDKHF 232 (390)
Q Consensus 219 ~~L~i~~~~~~~~~ 232 (390)
+.|.+ .++.+
T Consensus 91 ~~L~l----s~N~i 100 (149)
T 2je0_A 91 THLNL----SGNKI 100 (149)
T ss_dssp CEEEC----TTSCC
T ss_pred CEEEC----CCCcC
Confidence 77777 55544
No 92
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.98 E-value=1.5e-06 Score=81.39 Aligned_cols=126 Identities=17% Similarity=0.093 Sum_probs=73.8
Q ss_pred HHHHHHHHhcccCCCceeEEEEEEccCC--Ch-hHHHHHHHHH-HhCCeeEEEEEeccCC-----CCceecCCCCCccCC
Q 045124 72 FQEFVSDILDRVNLLVIRRFYLHCLQSY--DA-EVLRDWVVRG-WTNNVVEVDIRVDNIN-----EDNFLDLPSNLCTST 142 (390)
Q Consensus 72 ~~~~v~~~l~~~~~~~l~~l~l~~~~~~--~~-~~~~~wl~~~-~~~~v~~L~L~~~~~~-----~~~~~~lp~~l~~c~ 142 (390)
+.+.+.++|.......++.+.+...... .. ..+..++..+ .-.+++.|.+...... +.....++..+-.++
T Consensus 93 ~~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P 172 (362)
T 2ra8_A 93 GVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMP 172 (362)
T ss_dssp TCCHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCT
T ss_pred HHHHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCC
Confidence 3345555666555555777777743311 11 2344444322 2258899887432110 000112334444578
Q ss_pred cccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhh-cCCccceEEEec
Q 045124 143 ALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYR-CCPVLDDLYVRG 201 (390)
Q Consensus 143 ~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~-~cp~Le~L~l~~ 201 (390)
+|+.|.|.++....++ . ...++|++|.|..+.+.. ..+..+.. .+|+|+.|+|..
T Consensus 173 ~L~~L~L~g~~~l~l~--~-~~~~~L~~L~L~~~~l~~-~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 173 LLNNLKIKGTNNLSIG--K-KPRPNLKSLEIISGGLPD-SVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp TCCEEEEECCBTCBCC--S-CBCTTCSEEEEECSBCCH-HHHHHHHHSBCTTCCEEEEEC
T ss_pred CCcEEEEeCCCCceec--c-ccCCCCcEEEEecCCCCh-HHHHHHHHccCCCCcEEEEec
Confidence 9999999887433444 2 348899999998877764 56666553 689999999864
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.98 E-value=1.8e-06 Score=75.47 Aligned_cols=84 Identities=19% Similarity=0.107 Sum_probs=41.9
Q ss_pred CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEcc
Q 045124 137 NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVST 216 (390)
Q Consensus 137 ~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~ 216 (390)
.+..+++|++|+|+++.+..++...+..+++|+.|+|++..+.. .....+..++.|+.|+|.++....+...+ -..+
T Consensus 59 ~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~ 135 (229)
T 3e6j_A 59 VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV--LPSAVFDRLVHLKELFMCCNKLTELPRGI-ERLT 135 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCSCCTTG-GGCT
T ss_pred HhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc--cChhHhCcchhhCeEeccCCcccccCccc-ccCC
Confidence 34445666666666665544443334456666666666555442 12233445666666666665543221101 1235
Q ss_pred ceeEEEe
Q 045124 217 SVRNLNS 223 (390)
Q Consensus 217 ~L~~L~i 223 (390)
+|+.|.+
T Consensus 136 ~L~~L~L 142 (229)
T 3e6j_A 136 HLTHLAL 142 (229)
T ss_dssp TCSEEEC
T ss_pred CCCEEEC
Confidence 5666666
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.97 E-value=2.3e-06 Score=74.35 Aligned_cols=135 Identities=18% Similarity=0.186 Sum_probs=77.9
Q ss_pred ecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeE
Q 045124 132 LDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQF 211 (390)
Q Consensus 132 ~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l 211 (390)
..+|..+. ++|+.|+|.++.+...++..+..+++|+.|+|++..+.. .....+.+++.|+.|+|.++....+....
T Consensus 24 ~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 99 (220)
T 2v9t_B 24 TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--LAPDAFQGLRSLNSLVLYGNKITELPKSL 99 (220)
T ss_dssp SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--ECTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--cCHHHhhCCcCCCEEECCCCcCCccCHhH
Confidence 44555443 578888888877655554456677888888888776642 22344667788888888887654322100
Q ss_pred EEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc---eeeeccCCcceeEEeee
Q 045124 212 DVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA---QYILRNLNLLEKADIGI 277 (390)
Q Consensus 212 ~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~---~~~~~~~~~L~~l~l~~ 277 (390)
--..++|+.|.+ .++..... .....-..++|+.|+++++... ...+..+++|+.+++..
T Consensus 100 f~~l~~L~~L~L----~~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 100 FEGLFSLQLLLL----NANKINCL---RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp TTTCTTCCEEEC----CSSCCCCC---CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccCCCCCCEEEC----CCCCCCEe---CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 013467788877 55544321 0011113467777777664321 12355667777776643
No 95
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.97 E-value=1.5e-05 Score=83.21 Aligned_cols=167 Identities=13% Similarity=0.070 Sum_probs=99.9
Q ss_pred CCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeE
Q 045124 141 STALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRN 220 (390)
Q Consensus 141 c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~ 220 (390)
+++|+.|+|+++.+...++.....+++|++|+|.+..+.. .....+.+++.|+.|+|.+|.........-...++|+.
T Consensus 265 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK--IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE--ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC--CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 4789999998887655544466788999999999887753 23345678899999999988763331100014578999
Q ss_pred EEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccceeeeccCCcceeEEeeeeeeeecCCCC----c--cC-CCc
Q 045124 221 LNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQYILRNLNLLEKADIGIGGVFMCPRGG----G--FD-FDH 293 (390)
Q Consensus 221 L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~----~--f~-~~~ 293 (390)
|.+ .++..... .....-..++|+.|+++++... .+..+++|+.+.+..+.....+... . +. +.-
T Consensus 343 L~L----~~N~i~~~---~~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 343 IDL----QKNHIAII---QDQTFKFLEKLQTLDLRDNALT--TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413 (844)
T ss_dssp EEC----CSCCCCCC---CSSCSCSCCCCCEEEEETCCSC--CCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCC
T ss_pred EEC----CCCCCCcc---ChhhhcCCCCCCEEECCCCCCC--cccCCCCcchhccCCCCcccccccccccceeecccCcc
Confidence 999 56654321 1112235788999999876431 2334777777777654322221110 0 00 000
Q ss_pred cHHHHHhhhccCCCccEEEEecccc
Q 045124 294 WSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 294 ~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
.......++..+|+|+.|.++....
T Consensus 414 ~~l~~~~~~~~l~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 414 ENLDILYFLLRVPHLQILILNQNRF 438 (844)
T ss_dssp CSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred ccCchhhhhhcCCccceeeCCCCcc
Confidence 0011223355778888888877654
No 96
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.97 E-value=6.1e-06 Score=75.64 Aligned_cols=177 Identities=18% Similarity=0.097 Sum_probs=97.6
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccC-----CcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchH-hHh
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTS-----TALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHH-RDL 187 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c-----~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l-~~l 187 (390)
..+++|+|..+.. ...|..+... ++|++|+|+++.+...++.....+++|++|+|++..+.+...+ ..+
T Consensus 121 ~~L~~L~Ls~N~l-----~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 121 PDLNILNLRNVSW-----ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCCSEEEEESCBC-----SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred CCccEEEccCCCC-----cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 5677777765421 1224333333 6788888888776666544566778888888887654321112 222
Q ss_pred -hhcCCccceEEEeceecCCCCeeEE----EEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccccee
Q 045124 188 -YRCCPVLDDLYVRGNIAEPLPFQFD----VVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQY 262 (390)
Q Consensus 188 -l~~cp~Le~L~l~~c~~~~~~~~l~----i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~ 262 (390)
+..++.|++|++.+|....... +. -..++|+.|.+ .++.+... .........++|++|+++++.....
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~l~~L~~L~L----s~N~l~~~--~~~~~~~~l~~L~~L~Ls~N~l~~i 268 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSG-VCSALAAARVQLQGLDL----SHNSLRDA--AGAPSCDWPSQLNSLNLSFTGLKQV 268 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHH-HHHHHHHTTCCCSEEEC----TTSCCCSS--CCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred HhccCCCCCEEECCCCcCcchHH-HHHHHHhcCCCCCEEEC----CCCcCCcc--cchhhhhhcCCCCEEECCCCccChh
Confidence 2667888888888776532111 10 02267888888 56555431 0001122357788888877543211
Q ss_pred eeccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccc
Q 045124 263 ILRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 263 ~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
.-.-.++|++++++.... ..+.. +..+|+|+.|.+++-..
T Consensus 269 p~~~~~~L~~L~Ls~N~l---------------~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 269 PKGLPAKLSVLDLSYNRL---------------DRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CSSCCSEEEEEECCSSCC---------------CSCCC-TTTSCEEEEEECTTCTT
T ss_pred hhhccCCceEEECCCCCC---------------CCChh-HhhCCCCCEEeccCCCC
Confidence 101116777777753321 11112 55778888888887644
No 97
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.96 E-value=3.8e-06 Score=75.49 Aligned_cols=37 Identities=27% Similarity=0.604 Sum_probs=34.6
Q ss_pred CcCCCCChHHHHHHHccCChHHHH-HHHHhhhchHHhh
Q 045124 7 NFFYGLPDDILRHIIACLPTKNAV-GTSLISRQWIDLW 43 (390)
Q Consensus 7 D~is~LPd~iL~~Ils~Lp~~~~~-rts~lSrrWr~lw 43 (390)
..++.||||||..||++||.++++ +++.|||+|+.+-
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 468899999999999999999999 9999999999874
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.96 E-value=4.8e-07 Score=84.92 Aligned_cols=212 Identities=14% Similarity=0.164 Sum_probs=126.4
Q ss_pred eeEEEEEEccC--CChhHHHHHHHHHHhC-CeeEEEEEeccCCCCceecCCCCCcc-CCcccEEEEcCeeecCCCCCC--
Q 045124 88 IRRFYLHCLQS--YDAEVLRDWVVRGWTN-NVVEVDIRVDNINEDNFLDLPSNLCT-STALEVLKLQGNITLDPDPDQ-- 161 (390)
Q Consensus 88 l~~l~l~~~~~--~~~~~~~~wl~~~~~~-~v~~L~L~~~~~~~~~~~~lp~~l~~-c~~L~~L~L~~~~~~~~~~~~-- 161 (390)
++.+.+..... .....+...+.. .. ++++|+|..+.........+...+.. +++|++|+|++|.+...+...
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFAN--TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHT--CCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHh--CCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 77777755432 112222222211 23 79999997652211111111111122 289999999999875443211
Q ss_pred --cccC-CcccEEEeeeEEECCC--chHhHhhhc-CCccceEEEeceecCCCCeeEEE-----Ec-cceeEEEeeeeecc
Q 045124 162 --RVIF-PSLRILHMDVIQLGVS--GHHRDLYRC-CPVLDDLYVRGNIAEPLPFQFDV-----VS-TSVRNLNSEFYLED 229 (390)
Q Consensus 162 --~~~~-~~Lk~L~L~~v~~~~~--~~l~~ll~~-cp~Le~L~l~~c~~~~~~~~l~i-----~~-~~L~~L~i~~~~~~ 229 (390)
...+ ++|++|+|+++.+.+. ..+...+.. ++.|++|+|.+|...+... -.+ .. ++|+.|.+ .+
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~L----s~ 176 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS-DELIQILAAIPANVNSLNL----RG 176 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH-HHHHHHHHTSCTTCCEEEC----TT
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH-HHHHHHHhcCCccccEeee----cC
Confidence 2234 8999999999998762 234444555 6799999999997643221 001 12 48999999 77
Q ss_pred CCCCCCCCCcce---EEEec-CccceEEeeecccce-------eeecc-CCcceeEEeeeeeeeecCCCCccCCCccHHH
Q 045124 230 KHFDNEDNVSLT---FEINT-QNLVCLELRENFFAQ-------YILRN-LNLLEKADIGIGGVFMCPRGGGFDFDHWSDE 297 (390)
Q Consensus 230 ~~~~~~~~~~~~---~~i~a-p~L~~L~~~~~~~~~-------~~~~~-~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~ 297 (390)
|..... +... ..... ++|+.|+++++.... ..+.. .++|++++++.+.. .......
T Consensus 177 n~l~~~--~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l----------~~~~~~~ 244 (362)
T 3goz_A 177 NNLASK--NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL----------HGPSLEN 244 (362)
T ss_dssp SCGGGS--CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC----------CCCCHHH
T ss_pred CCCchh--hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC----------CcHHHHH
Confidence 766432 1111 11123 599999998864321 12333 45899999865431 1223467
Q ss_pred HHhhhccCCCccEEEEecccc
Q 045124 298 RISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 298 l~~lL~~~p~L~~L~l~~~~~ 318 (390)
+..+++.+++|+.|.++....
T Consensus 245 l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 245 LKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp HHHTTTTTTTCSEEEEEHHHH
T ss_pred HHHHHhcCCCccEEEeccCCc
Confidence 778889999999999999864
No 99
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.96 E-value=2.4e-06 Score=86.96 Aligned_cols=84 Identities=13% Similarity=0.031 Sum_probs=42.6
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeec-CCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITL-DPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~-~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
..++.|++..+ .-....|..+..+++|+.|+|++|.+. ..+......+++|++|+|+++.+.. .....+..||
T Consensus 381 ~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~ 454 (680)
T 1ziw_A 381 SPLHILNLTKN----KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ--LTRNSFALVP 454 (680)
T ss_dssp SCCCEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE--CCTTTTTTCT
T ss_pred CcCceEECCCC----CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce--eChhhhhcCc
Confidence 46677777543 111223444555677777777766543 2332244556666666666654432 1122233455
Q ss_pred ccceEEEecee
Q 045124 193 VLDDLYVRGNI 203 (390)
Q Consensus 193 ~Le~L~l~~c~ 203 (390)
.|+.|.+.+|.
T Consensus 455 ~L~~L~l~~n~ 465 (680)
T 1ziw_A 455 SLQRLMLRRVA 465 (680)
T ss_dssp TCCEEECTTSC
T ss_pred ccccchhcccc
Confidence 55555555543
No 100
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=2.1e-06 Score=71.30 Aligned_cols=97 Identities=7% Similarity=-0.015 Sum_probs=65.0
Q ss_pred eecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhc---CCccceEEEeceec-CC
Q 045124 131 FLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRC---CPVLDDLYVRGNIA-EP 206 (390)
Q Consensus 131 ~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~---cp~Le~L~l~~c~~-~~ 206 (390)
...+|..-...-.|++|+|++|.+.+..-....++++|++|+|++|..-++..+..+-.. |+.|++|+|++|.. .+
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 456676444556899999999875432211345789999999999864444778877663 78999999999864 11
Q ss_pred --CCeeEEEEccceeEEEeeeeeccCCCC
Q 045124 207 --LPFQFDVVSTSVRNLNSEFYLEDKHFD 233 (390)
Q Consensus 207 --~~~~l~i~~~~L~~L~i~~~~~~~~~~ 233 (390)
+.. +. ..++|++|.+ .+|...
T Consensus 130 ~Gl~~-L~-~~~~L~~L~L----~~c~~I 152 (176)
T 3e4g_A 130 KGIIA-LH-HFRNLKYLFL----SDLPGV 152 (176)
T ss_dssp HHHHH-GG-GCTTCCEEEE----ESCTTC
T ss_pred HHHHH-Hh-cCCCCCEEEC----CCCCCC
Confidence 111 21 4577888888 677644
No 101
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.93 E-value=2e-06 Score=77.34 Aligned_cols=177 Identities=12% Similarity=0.016 Sum_probs=105.4
Q ss_pred CCeeEEEEEeccCCCCceecCCC-CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPS-NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~-~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
.++++|++..+. ...+++ .+..+++|++|+|+++.+...++.....+++|++|+|.+..+.. .....+..++
T Consensus 52 ~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~ 124 (276)
T 2z62_A 52 PELQVLDLSRCE-----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS--LENFPIGHLK 124 (276)
T ss_dssp TTCSEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC--STTCCCTTCT
T ss_pred cCCcEEECCCCc-----CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccc--cCchhcccCC
Confidence 578888885441 123333 45667899999999887655554456788999999998877653 1122367789
Q ss_pred ccceEEEeceecCCCC--eeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccc----eEEeeeccccee--ee
Q 045124 193 VLDDLYVRGNIAEPLP--FQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLV----CLELRENFFAQY--IL 264 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~--~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~----~L~~~~~~~~~~--~~ 264 (390)
.|+.|++.++...... . .--..++|+.|.+ .++..... .....-..++|+ +|++++...... ..
T Consensus 125 ~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~L----s~N~l~~~---~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~ 196 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDL----SSNKIQSI---YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196 (276)
T ss_dssp TCCEEECCSSCCCCCCCCG-GGGGCTTCCEEEC----CSSCCCEE---CGGGGHHHHTCTTCCEEEECCSSCCCEECTTS
T ss_pred CCCEEECcCCccceecCch-hhccCCCCCEEEC----CCCCCCcC---CHHHhhhhhhccccceeeecCCCcccccCccc
Confidence 9999999888764321 1 0013478999999 66654311 000001233444 566665432111 12
Q ss_pred ccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEeccccc
Q 045124 265 RNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTVG 319 (390)
Q Consensus 265 ~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~ 319 (390)
....+|++++++.+..... ...++..+++|+.|.|++....
T Consensus 197 ~~~~~L~~L~L~~n~l~~~--------------~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 197 FKEIRLKELALDTNQLKSV--------------PDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCSCCEEEEECCSSCCSCC--------------CTTTTTTCCSCCEEECCSSCBC
T ss_pred cCCCcccEEECCCCceeec--------------CHhHhcccccccEEEccCCccc
Confidence 2334788888754431111 1134578899999999987664
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.91 E-value=2.8e-06 Score=72.91 Aligned_cols=127 Identities=16% Similarity=0.040 Sum_probs=62.0
Q ss_pred CcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeEE
Q 045124 142 TALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNL 221 (390)
Q Consensus 142 ~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L 221 (390)
++|++|+|+++.+...++.....+++|++|+|.+..+.. .....+..++.|+.|+|.+|.........--..++|+.|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS--LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc--cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 356666666665544443334456666666666555442 122334556666666666665422111000123556666
Q ss_pred EeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc---eeeeccCCcceeEEeee
Q 045124 222 NSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA---QYILRNLNLLEKADIGI 277 (390)
Q Consensus 222 ~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~---~~~~~~~~~L~~l~l~~ 277 (390)
.+ .++.+... .....-..++|+.|++++.... ...+.++++|+.+++..
T Consensus 106 ~L----~~N~l~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 106 AL----NTNQLQSL---PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp EC----CSSCCCCC---CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred Ec----CCCcCccc---CHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecC
Confidence 66 44443211 0001113466666666654321 11255677777777743
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.90 E-value=3e-06 Score=75.75 Aligned_cols=142 Identities=16% Similarity=0.078 Sum_probs=74.5
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
..++.|++..+. ...+| .+..+++|+.|+|++|.+...+ ....+++|+.|+|++..+.+ +..+. . +.
T Consensus 41 ~~L~~L~l~~n~-----i~~l~-~l~~l~~L~~L~L~~N~i~~~~--~l~~l~~L~~L~L~~N~l~~---l~~~~-~-~~ 107 (263)
T 1xeu_A 41 SGVQNFNGDNSN-----IQSLA-GMQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKN---LNGIP-S-AC 107 (263)
T ss_dssp TTCSEEECTTSC-----CCCCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCSC---CTTCC-C-SS
T ss_pred CcCcEEECcCCC-----cccch-HHhhCCCCCEEECCCCccCCCh--hhccCCCCCEEECCCCccCC---cCccc-c-Cc
Confidence 455666664331 11233 3455666777777666655555 25566677777776666543 22221 1 66
Q ss_pred cceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc-eeeeccCCccee
Q 045124 194 LDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA-QYILRNLNLLEK 272 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~-~~~~~~~~~L~~ 272 (390)
|+.|++.+|....... +. ..++|+.|.+ .++..... ...-..++|+.|+++++... ...+.++++|+.
T Consensus 108 L~~L~L~~N~l~~~~~-l~-~l~~L~~L~L----s~N~i~~~-----~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~ 176 (263)
T 1xeu_A 108 LSRLFLDNNELRDTDS-LI-HLKNLEILSI----RNNKLKSI-----VMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNW 176 (263)
T ss_dssp CCEEECCSSCCSBSGG-GT-TCTTCCEEEC----TTSCCCBC-----GGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCE
T ss_pred ccEEEccCCccCCChh-hc-CcccccEEEC----CCCcCCCC-----hHHccCCCCCEEECCCCcCcchHHhccCCCCCE
Confidence 6777766665433322 11 3456666666 45544321 11113456666666654321 133556667777
Q ss_pred EEeeeee
Q 045124 273 ADIGIGG 279 (390)
Q Consensus 273 l~l~~~~ 279 (390)
+++....
T Consensus 177 L~l~~N~ 183 (263)
T 1xeu_A 177 IDLTGQK 183 (263)
T ss_dssp EEEEEEE
T ss_pred EeCCCCc
Confidence 7765543
No 104
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.89 E-value=2.9e-06 Score=85.26 Aligned_cols=131 Identities=16% Similarity=0.126 Sum_probs=90.0
Q ss_pred CCeeEEEEEeccCCCCceecCCC-CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPS-NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~-~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
..+++|+|+... -..+|+ .+..+++|++|+|++|.+..+++..+..+++|++|+|++..+.. --...+.+++
T Consensus 52 ~~~~~LdLs~N~-----i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--l~~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNP-----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLS 124 (635)
T ss_dssp TTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECGGGGTTCT
T ss_pred cCCCEEEeeCCC-----CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--CCHHHhcCCC
Confidence 578899986552 234554 56678999999999998766665457789999999999887653 2234678899
Q ss_pred ccceEEEeceecCCCCeeEEE-EccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecc
Q 045124 193 VLDDLYVRGNIAEPLPFQFDV-VSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENF 258 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 258 (390)
+|++|+|.+|....+.. ..+ ..++|+.|.+ ..+.+... ......-..++|++|++++..
T Consensus 125 ~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~L----s~N~l~~~--~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 125 SLQKLVAVETNLASLEN-FPIGHLKTLKELNV----AHNLIQSF--KLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TCCEEECTTSCCCCSTT-CCCTTCTTCCEEEC----CSSCCCCC--CCCGGGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCCCCh-hhhhcCcccCeecc----ccCccccC--CCchhhccchhhhhhcccCcc
Confidence 99999999987644432 112 3578999999 56654321 001112245788888887753
No 105
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.87 E-value=2.8e-06 Score=88.55 Aligned_cols=135 Identities=10% Similarity=0.004 Sum_probs=96.9
Q ss_pred CCCCCccCCcccEEEEcCeeecC------------------CCCCCcc--cCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 134 LPSNLCTSTALEVLKLQGNITLD------------------PDPDQRV--IFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 134 lp~~l~~c~~L~~L~L~~~~~~~------------------~~~~~~~--~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
+|..+..+++|+.|+|+++.+.. +|. ... .+++|+.|+|+++.+. ..+...+..++.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~--~~iP~~l~~L~~ 516 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNM--TQLPDFLYDLPE 516 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTC--CSCCGGGGGCSS
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCC--ccChHHHhCCCC
Confidence 88888899999999999998766 663 334 8999999999998765 345567889999
Q ss_pred cceEEEecee-cCC--CCee---EE---EEccceeEEEeeeeeccCCCCCCCCCcce--EEEecCccceEEeeecccc-e
Q 045124 194 LDDLYVRGNI-AEP--LPFQ---FD---VVSTSVRNLNSEFYLEDKHFDNEDNVSLT--FEINTQNLVCLELRENFFA-Q 261 (390)
Q Consensus 194 Le~L~l~~c~-~~~--~~~~---l~---i~~~~L~~L~i~~~~~~~~~~~~~~~~~~--~~i~ap~L~~L~~~~~~~~-~ 261 (390)
|+.|+|.+|. ... +... +. ...|+|+.|.+ .++.+... .. ..-..++|+.|+++++... .
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L----s~N~L~~i----p~~~~l~~L~~L~~L~Ls~N~l~~l 588 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM----GYNNLEEF----PASASLQKMVKLGLLDCVHNKVRHL 588 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC----CSSCCCBC----CCHHHHTTCTTCCEEECTTSCCCBC
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe----eCCcCCcc----CChhhhhcCCCCCEEECCCCCcccc
Confidence 9999999996 321 1000 00 12358999999 67765421 11 2236788999999885432 2
Q ss_pred eeeccCCcceeEEeeeee
Q 045124 262 YILRNLNLLEKADIGIGG 279 (390)
Q Consensus 262 ~~~~~~~~L~~l~l~~~~ 279 (390)
..+.++++|+.++++.+.
T Consensus 589 p~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 589 EAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp CCCCTTSEESEEECCSSC
T ss_pred hhhcCCCcceEEECcCCc
Confidence 267889999999986543
No 106
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.86 E-value=4.6e-06 Score=82.04 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=88.5
Q ss_pred cCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEE
Q 045124 133 DLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFD 212 (390)
Q Consensus 133 ~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~ 212 (390)
.+|..+. ++|++|+|++|.+...++.....+++|++|+|++..+.+ .....+..++.|++|+|++|....+.. .
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~- 87 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY--LDISVFKFNQELEYLDLSHNKLVKISC-H- 87 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE--EEGGGGTTCTTCCEEECCSSCCCEEEC-C-
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCC--cChHHhhcccCCCEEecCCCceeecCc-c-
Confidence 5666555 788999998887766653345678899999998887753 234557788999999998887543222 1
Q ss_pred EEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccceeeeccCCcc--eeEEeeee
Q 045124 213 VVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQYILRNLNLL--EKADIGIG 278 (390)
Q Consensus 213 i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~~~~~~~L--~~l~l~~~ 278 (390)
..++|+.|.+ .++.+... ......-..++|++|++++.......+..+++| +++++..+
T Consensus 88 -~l~~L~~L~L----~~N~l~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 88 -PTVNLKHLDL----SFNAFDAL--PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp -CCCCCSEEEC----CSSCCSSC--CCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEEC
T ss_pred -ccCCccEEec----cCCccccc--cchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecc
Confidence 4578888888 66665321 000112256788888888865433455666777 77777654
No 107
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.85 E-value=3.5e-06 Score=74.91 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=32.6
Q ss_pred cCCCCChHHHHHHHccCChHHHHHHHHhhhchHHh
Q 045124 8 FFYGLPDDILRHIIACLPTKNAVGTSLISRQWIDL 42 (390)
Q Consensus 8 ~is~LPd~iL~~Ils~Lp~~~~~rts~lSrrWr~l 42 (390)
-|+.||+||+.+|||||+.+|+++.+.+||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999964
No 108
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.85 E-value=1.5e-06 Score=74.15 Aligned_cols=82 Identities=21% Similarity=0.146 Sum_probs=57.1
Q ss_pred CCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEE
Q 045124 135 PSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVV 214 (390)
Q Consensus 135 p~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~ 214 (390)
|..+..+++|+.|+|++|.+..+| ....+++|++|+|+++.+.. +...+..+|.|+.|++.+|....+.. + ..
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~---l~~~~~~~~~L~~L~L~~N~l~~l~~-~-~~ 113 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKK---IENLDAVADTLEELWISYNQIASLSG-I-EK 113 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECS---CSSHHHHHHHCSEEEEEEEECCCHHH-H-HH
T ss_pred hHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccc---ccchhhcCCcCCEEECcCCcCCcCCc-c-cc
Confidence 335666788888888888877766 67778888888888888763 44556667888888888887543221 1 12
Q ss_pred ccceeEEEe
Q 045124 215 STSVRNLNS 223 (390)
Q Consensus 215 ~~~L~~L~i 223 (390)
.++|+.|.+
T Consensus 114 l~~L~~L~l 122 (198)
T 1ds9_A 114 LVNLRVLYM 122 (198)
T ss_dssp HHHSSEEEE
T ss_pred CCCCCEEEC
Confidence 356666666
No 109
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.85 E-value=2.3e-05 Score=78.74 Aligned_cols=53 Identities=23% Similarity=0.142 Sum_probs=25.3
Q ss_pred CcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceec
Q 045124 142 TALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 142 ~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
++|+.|+|++|.+..+| . .+++|++|+|+++.+.. +.. ..++|+.|+|.+|..
T Consensus 61 ~~L~~L~L~~N~l~~lp--~--~l~~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLP--A--LPPELRTLEVSGNQLTS---LPV---LPPGLLELSIFSNPL 113 (622)
T ss_dssp TTCSEEEECSCCCSCCC--C--CCTTCCEEEECSCCCSC---CCC---CCTTCCEEEECSCCC
T ss_pred CCCcEEEecCCCCCCCC--C--cCCCCCEEEcCCCcCCc---CCC---CCCCCCEEECcCCcC
Confidence 45555555555544443 1 34555555555544432 111 345555555555543
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.84 E-value=4.3e-06 Score=71.74 Aligned_cols=130 Identities=18% Similarity=0.158 Sum_probs=79.6
Q ss_pred CCeeEEEEEeccCCCCceecCCCC-CccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSN-LCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~-l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
.++++|++.... ...+|.. +..+++|++|+|+++.+...++.....+++|++|+|++..+.. .....+..++
T Consensus 28 ~~l~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~ 100 (208)
T 2o6s_A 28 AQTTYLDLETNS-----LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS--LPNGVFDKLT 100 (208)
T ss_dssp TTCSEEECCSSC-----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCT
T ss_pred CCCcEEEcCCCc-----cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc--cCHhHhcCcc
Confidence 467777775541 1244444 3467888888888887766664345678888888888776653 2234466788
Q ss_pred ccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeec
Q 045124 193 VLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELREN 257 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~ 257 (390)
.|+.|++.++....+....--..++|+.|.+ .++.+... .....-..++|+.|++++.
T Consensus 101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l----~~N~l~~~---~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRL----YQNQLKSV---PDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC----CSSCCSCC---CTTTTTTCTTCCEEECCSC
T ss_pred CCCEEEcCCCcCcccCHhHhccCCcCCEEEC----CCCcccee---CHHHhccCCCccEEEecCC
Confidence 8888888887653321100013467888888 55554321 0111124577888888775
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.82 E-value=4e-06 Score=72.82 Aligned_cols=130 Identities=15% Similarity=0.113 Sum_probs=88.6
Q ss_pred CCeeEEEEEeccCCCCceecCCC-CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPS-NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~-~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
.++++|+|.... ...+|+ .+..+++|+.|+|+++.+....+..+..+++|++|+|++..+.. .-..++.+++
T Consensus 32 ~~l~~L~l~~n~-----i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNT-----IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSC-----CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC--CCTTTTTTCT
T ss_pred cCCCEEECCCCc-----CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc--cCHhHccCCC
Confidence 567888886542 223444 45567999999999998766544467789999999999887763 2234567899
Q ss_pred ccceEEEeceecCCCCeeEEE-EccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecc
Q 045124 193 VLDDLYVRGNIAEPLPFQFDV-VSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENF 258 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 258 (390)
.|+.|+|.++....... -.+ ..++|+.|.+ .++.+... .....-..++|+.|+++++.
T Consensus 105 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L----~~N~l~~~---~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRV-DAFQDLHNLNLLSL----YDNKLQTI---AKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSSCCCCCCT-TTTTTCTTCCEEEC----CSSCCSCC---CTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCEeCH-HHcCCCCCCCEEEC----CCCcCCEE---CHHHHhCCCCCCEEEeCCCC
Confidence 99999999987643311 001 3478999999 66665432 01111246789999998864
No 112
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.79 E-value=3.3e-06 Score=85.97 Aligned_cols=64 Identities=19% Similarity=0.050 Sum_probs=30.1
Q ss_pred ccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceec
Q 045124 139 CTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 139 ~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
..+++|++|+|++|.+...|+.....+++|++|+|+++.+.. .....+..++.|+.|++.+|..
T Consensus 70 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l 133 (680)
T 1ziw_A 70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK--IKNNPFVKQKNLITLDLSHNGL 133 (680)
T ss_dssp HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCSCTTTTCTTCCEEECCSSCC
T ss_pred hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc--cChhHccccCCCCEEECCCCcc
Confidence 345555555555554444443234455555555555544432 1112234455555555555543
No 113
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.79 E-value=8.4e-06 Score=81.05 Aligned_cols=132 Identities=19% Similarity=0.141 Sum_probs=74.0
Q ss_pred cCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEE
Q 045124 133 DLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFD 212 (390)
Q Consensus 133 ~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~ 212 (390)
.+|..+. ++|++|+|+++.+...++.....+++|++|+|++..+.+ .....+.+++.|++|+|++|....+.. .
T Consensus 45 ~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~- 118 (562)
T 3a79_B 45 HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS--LDFHVFLFNQDLEYLDVSHNRLQNISC-C- 118 (562)
T ss_dssp SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE--ECTTTTTTCTTCCEEECTTSCCCEECS-C-
T ss_pred cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc--CCHHHhCCCCCCCEEECCCCcCCccCc-c-
Confidence 3555443 677777777776655554455667777777777766542 223445667777777777776543332 1
Q ss_pred EEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccceeeeccCCcc--eeEEeee
Q 045124 213 VVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQYILRNLNLL--EKADIGI 277 (390)
Q Consensus 213 i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~~~~~~~L--~~l~l~~ 277 (390)
..++|+.|.+ .++.+... ......-..++|++|++++.......+.++++| ++++++.
T Consensus 119 -~l~~L~~L~L----s~N~l~~l--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 119 -PMASLRHLDL----SFNDFDVL--PVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL 178 (562)
T ss_dssp -CCTTCSEEEC----CSSCCSBC--CCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEE
T ss_pred -ccccCCEEEC----CCCCcccc--CchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeec
Confidence 4566777777 55554321 000111245677777777654322334444444 6665544
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.79 E-value=1.8e-06 Score=72.08 Aligned_cols=80 Identities=13% Similarity=0.020 Sum_probs=49.3
Q ss_pred CccCCcccEEEEcCeeecCCCCCCcccC-CcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEcc
Q 045124 138 LCTSTALEVLKLQGNITLDPDPDQRVIF-PSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVST 216 (390)
Q Consensus 138 l~~c~~L~~L~L~~~~~~~~~~~~~~~~-~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~ 216 (390)
...+.+|++|.|++|.+..++ ....+ ++|+.|+|++..+.+ + .-+..++.|+.|++.+|....+...+.-..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~---~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRK---L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCE---E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred cCCcCCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCc---c-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 345678888888888766654 34443 488888888776653 2 3456778888888877765321110001345
Q ss_pred ceeEEEe
Q 045124 217 SVRNLNS 223 (390)
Q Consensus 217 ~L~~L~i 223 (390)
+|+.|.+
T Consensus 89 ~L~~L~L 95 (176)
T 1a9n_A 89 DLTELIL 95 (176)
T ss_dssp TCCEEEC
T ss_pred CCCEEEC
Confidence 6777777
No 115
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.72 E-value=5.8e-06 Score=79.76 Aligned_cols=130 Identities=14% Similarity=0.060 Sum_probs=87.8
Q ss_pred CCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeE
Q 045124 141 STALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRN 220 (390)
Q Consensus 141 c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~ 220 (390)
+++|+.|+|+++.+...++.....+++|++|+|++..+.+ .....+..++.|+.|+|.+|.........--..++|+.
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK--IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc--cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 4789999999988765554466789999999999887763 23445678999999999998653211100013578999
Q ss_pred EEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccce---eeeccCCcceeEEeeeee
Q 045124 221 LNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQ---YILRNLNLLEKADIGIGG 279 (390)
Q Consensus 221 L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~---~~~~~~~~L~~l~l~~~~ 279 (390)
|.+ .++..... ........|+|++|+++++.... ..+.++++|++++++...
T Consensus 352 L~L----s~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 352 LDL----SYNHIRAL---GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EEC----CSSCCCEE---CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEC----CCCccccc---ChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 999 66654321 00111246899999998864322 235788999999986543
No 116
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.70 E-value=9.8e-06 Score=77.97 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=38.1
Q ss_pred CCCCCCcCCCCChHHHHHHHccCChHHHHHHHHhhhchHHhhc
Q 045124 2 PPRRRNFFYGLPDDILRHIIACLPTKNAVGTSLISRQWIDLWT 44 (390)
Q Consensus 2 ~~~~~D~is~LPd~iL~~Ils~Lp~~~~~rts~lSrrWr~lw~ 44 (390)
|.-..|.|+.||+||+.+||++|+.+++++++.|||+|+++..
T Consensus 8 ~~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 8 DNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp -CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred cccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence 3446799999999999999999999999999999999987643
No 117
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.68 E-value=6.3e-05 Score=75.52 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=50.0
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.+++.|+|..+. ...+|. .+++|++|+|++|.+..+| . .+++|++|+|+++.+.. +.. ..+.
T Consensus 61 ~~L~~L~L~~N~-----l~~lp~---~l~~L~~L~Ls~N~l~~lp--~--~l~~L~~L~Ls~N~l~~---l~~---~l~~ 122 (622)
T 3g06_A 61 AHITTLVIPDNN-----LTSLPA---LPPELRTLEVSGNQLTSLP--V--LPPGLLELSIFSNPLTH---LPA---LPSG 122 (622)
T ss_dssp TTCSEEEECSCC-----CSCCCC---CCTTCCEEEECSCCCSCCC--C--CCTTCCEEEECSCCCCC---CCC---CCTT
T ss_pred CCCcEEEecCCC-----CCCCCC---cCCCCCEEEcCCCcCCcCC--C--CCCCCCEEECcCCcCCC---CCC---CCCC
Confidence 466777775441 123444 3467777777777665555 2 66777777777665543 111 4566
Q ss_pred cceEEEeceecCCCCeeEEEEccceeEEEe
Q 045124 194 LDDLYVRGNIAEPLPFQFDVVSTSVRNLNS 223 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i 223 (390)
|+.|++.+|....+.. ..++|+.|.+
T Consensus 123 L~~L~L~~N~l~~lp~----~l~~L~~L~L 148 (622)
T 3g06_A 123 LCKLWIFGNQLTSLPV----LPPGLQELSV 148 (622)
T ss_dssp CCEEECCSSCCSCCCC----CCTTCCEEEC
T ss_pred cCEEECCCCCCCcCCC----CCCCCCEEEC
Confidence 6666666665433222 2356666666
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.66 E-value=1.1e-05 Score=70.01 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=68.7
Q ss_pred cccEEEEcCeeecCCCC-CCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeEE
Q 045124 143 ALEVLKLQGNITLDPDP-DQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNL 221 (390)
Q Consensus 143 ~L~~L~L~~~~~~~~~~-~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L 221 (390)
.++.|+|+++.+...++ ..+..+++|++|+|++..+.. .....+.+++.|+.|+|.++.........--..++|+.|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~--i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE--ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 45677777766544421 234567777777777665542 112345567777777777766533221000124667777
Q ss_pred EeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc---eeeeccCCcceeEEeeee
Q 045124 222 NSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA---QYILRNLNLLEKADIGIG 278 (390)
Q Consensus 222 ~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~---~~~~~~~~~L~~l~l~~~ 278 (390)
.+ .++.+... ........++|+.|+++++... ...+.++++|+.+++...
T Consensus 111 ~L----s~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 111 ML----RSNRITCV---GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp EC----TTSCCCCB---CTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EC----CCCcCCeE---CHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 77 45544321 0011114567777777664321 234667788888877543
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.62 E-value=4.5e-06 Score=69.66 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=71.0
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccC-CcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTS-TALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c-~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
.++++|++..+.. ..+|. +..+ ++|+.|+|++|.+..++ ....+++|++|+|++..+.. .-..++..+|
T Consensus 19 ~~L~~L~l~~n~l-----~~i~~-~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~ 88 (176)
T 1a9n_A 19 VRDRELDLRGYKI-----PVIEN-LGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICR--IGEGLDQALP 88 (176)
T ss_dssp TSCEEEECTTSCC-----CSCCC-GGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCE--ECSCHHHHCT
T ss_pred CCceEEEeeCCCC-----chhHH-hhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccc--cCcchhhcCC
Confidence 4678888865421 13443 4444 49999999999876554 67789999999999887763 1224557899
Q ss_pred ccceEEEeceecCCCCe--eEEEEccceeEEEeeeeeccCCCC
Q 045124 193 VLDDLYVRGNIAEPLPF--QFDVVSTSVRNLNSEFYLEDKHFD 233 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~--~l~i~~~~L~~L~i~~~~~~~~~~ 233 (390)
.|+.|++.+|....+.. .+. ..++|+.|.+ .++.+.
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~-~l~~L~~L~l----~~N~i~ 126 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLA-SLKSLTYLCI----LRNPVT 126 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGG-GCTTCCEEEC----CSSGGG
T ss_pred CCCEEECCCCcCCcchhhHhhh-cCCCCCEEEe----cCCCCC
Confidence 99999999987643321 011 3467888888 555543
No 120
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.61 E-value=8.2e-06 Score=81.88 Aligned_cols=137 Identities=21% Similarity=0.251 Sum_probs=95.3
Q ss_pred ceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCe
Q 045124 130 NFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPF 209 (390)
Q Consensus 130 ~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~ 209 (390)
....+|..+- +++++|+|+++.+..+++..+.++++|++|+|+++.+.. --...+.+++.|++|+|.+|....+..
T Consensus 42 ~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 42 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp CCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 3445565442 479999999998877776577899999999999987753 123457789999999999997532211
Q ss_pred eEEEEccceeEEEeeeeeccCCCCCCCCCcceE-EEecCccceEEeeecccc----eeeeccCCcceeEEeeee
Q 045124 210 QFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTF-EINTQNLVCLELRENFFA----QYILRNLNLLEKADIGIG 278 (390)
Q Consensus 210 ~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~-~i~ap~L~~L~~~~~~~~----~~~~~~~~~L~~l~l~~~ 278 (390)
..--..++|+.|.+ .++..... ... .-..++|++|++++.... ...+.++++|++++++..
T Consensus 118 ~~f~~L~~L~~L~L----s~N~l~~l----~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 118 GAFSGLSSLQKLVA----VETNLASL----ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp GGGTTCTTCCEEEC----TTSCCCCS----TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred HHhcCCCCCCEEEC----CCCcCCCC----ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 00013478999999 67765432 222 236789999999886431 234678899999988654
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.59 E-value=2.5e-05 Score=73.13 Aligned_cols=134 Identities=17% Similarity=0.092 Sum_probs=78.0
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCc--cCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLC--TSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCC 191 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~--~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~c 191 (390)
..++.|+|..+. ...++...+ .+++|+.|+|+++.+..+++..+..+++|+.|+|++..+.. .....+.++
T Consensus 39 ~~l~~L~Ls~N~-----l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l 111 (361)
T 2xot_A 39 SYTALLDLSHNN-----LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT--LDEFLFSDL 111 (361)
T ss_dssp TTCSEEECCSSC-----CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--ECTTTTTTC
T ss_pred CCCCEEECCCCC-----CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc--CCHHHhCCC
Confidence 346677775441 223444443 67888888888887766554456678888888888776642 223456678
Q ss_pred CccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecc
Q 045124 192 PVLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENF 258 (390)
Q Consensus 192 p~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 258 (390)
+.|+.|+|.+|.........--..++|+.|.+ .++.+.........-....++|+.|+++++.
T Consensus 112 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L----~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL----SQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEEC----CSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred cCCCEEECCCCcccEECHHHhCCcccCCEEEC----CCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 88888888887652210000013467888888 5555442200000001356778888887754
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.55 E-value=2.5e-05 Score=66.25 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=61.8
Q ss_pred cCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEE
Q 045124 133 DLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFD 212 (390)
Q Consensus 133 ~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~ 212 (390)
.+|..+. ++|+.|.|+++.+..+| .....+++|++|+|++..+.. .....+.+++.|+.|+|.++....+.. -.
T Consensus 24 ~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~ 97 (193)
T 2wfh_A 24 VLPKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRIST--LSNQSFSNMTQLLTLILSYNRLRCIPP-RT 97 (193)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCT-TT
T ss_pred cCCCCCC--CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCE--eCHhHccCCCCCCEEECCCCccCEeCH-HH
Confidence 4454332 46777777777665555 245567777777777766653 122345567777777777765432211 00
Q ss_pred E-EccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeec
Q 045124 213 V-VSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELREN 257 (390)
Q Consensus 213 i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~ 257 (390)
+ ..++|+.|.+ .++.+... .....-..++|+.|++.+.
T Consensus 98 f~~l~~L~~L~L----~~N~l~~~---~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 98 FDGLKSLRLLSL----HGNDISVV---PEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TTTCTTCCEEEC----CSSCCCBC---CTTTTTTCTTCCEEECCSS
T ss_pred hCCCCCCCEEEC----CCCCCCee---ChhhhhcCccccEEEeCCC
Confidence 1 2366777777 45544321 0011113567888887765
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.54 E-value=0.00012 Score=72.67 Aligned_cols=92 Identities=22% Similarity=0.227 Sum_probs=45.5
Q ss_pred CCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeE
Q 045124 141 STALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRN 220 (390)
Q Consensus 141 c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~ 220 (390)
+++|++|+|++|.+..+| . -..+|++|+|++..+.. +.. .++.|+.|+|.+|....+.. ..++|+.
T Consensus 99 l~~L~~L~Ls~N~l~~ip--~--l~~~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~ 164 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLP--E--LPASLKHLDVDNNQLTM---LPE---LPALLEYINADNNQLTMLPE----LPTSLEV 164 (571)
T ss_dssp CTTCCEEECCSSCCSCCC--C--CCTTCCEEECCSSCCSC---CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCE
T ss_pred cCCCCEEEccCCCCCCcc--h--hhcCCCEEECCCCcCCC---CCC---cCccccEEeCCCCccCcCCC----cCCCcCE
Confidence 455666666665554444 1 11156666666555442 222 45666666666665433221 2355666
Q ss_pred EEeeeeeccCCCCCCCCCcceEEEecCccceEEeeec
Q 045124 221 LNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELREN 257 (390)
Q Consensus 221 L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~ 257 (390)
|.+ .+|..... .. +. ++|+.|+++++
T Consensus 165 L~L----s~N~L~~l----p~--l~-~~L~~L~Ls~N 190 (571)
T 3cvr_A 165 LSV----RNNQLTFL----PE--LP-ESLEALDVSTN 190 (571)
T ss_dssp EEC----CSSCCSCC----CC--CC-TTCCEEECCSS
T ss_pred EEC----CCCCCCCc----ch--hh-CCCCEEECcCC
Confidence 666 44444321 11 22 56666666554
No 124
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.53 E-value=1.5e-05 Score=66.06 Aligned_cols=85 Identities=8% Similarity=-0.034 Sum_probs=54.8
Q ss_pred cCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceec-CC--CCeeEEE---EccceeEEEeeeeeccCCCCCCCC
Q 045124 164 IFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIA-EP--LPFQFDV---VSTSVRNLNSEFYLEDKHFDNEDN 237 (390)
Q Consensus 164 ~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~-~~--~~~~l~i---~~~~L~~L~i~~~~~~~~~~~~~~ 237 (390)
.-.+|+.|+|+++.+.+ .++..+ ++|+.|++|+|.+|.. .+ +.. +.- .+++|++|++ .+|...+. .
T Consensus 59 ~~~~L~~LDLs~~~Itd-~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~L----s~C~~ITD-~ 130 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMS-IGFDHM-EGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEI----ISCGNVTD-K 130 (176)
T ss_dssp TCCCEEEEEEESCCCCG-GGGGGG-TTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEE----ESCTTCCH-H
T ss_pred CCceEeEEeCcCCCccH-HHHHHh-cCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEc----CCCCcCCH-H
Confidence 34579999999999775 778776 7999999999999975 21 111 111 1357899999 67764332 2
Q ss_pred CcceEEEecCccceEEeeec
Q 045124 238 VSLTFEINTQNLVCLELREN 257 (390)
Q Consensus 238 ~~~~~~i~ap~L~~L~~~~~ 257 (390)
+...+. ..|+|++|+++++
T Consensus 131 Gl~~L~-~~~~L~~L~L~~c 149 (176)
T 3e4g_A 131 GIIALH-HFRNLKYLFLSDL 149 (176)
T ss_dssp HHHHGG-GCTTCCEEEEESC
T ss_pred HHHHHh-cCCCCCEEECCCC
Confidence 222222 3455665555544
No 125
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.51 E-value=5.4e-05 Score=70.80 Aligned_cols=133 Identities=14% Similarity=0.089 Sum_probs=78.3
Q ss_pred ccCCcccEEEeeeEEECC-------CchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCC
Q 045124 163 VIFPSLRILHMDVIQLGV-------SGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNE 235 (390)
Q Consensus 163 ~~~~~Lk~L~L~~v~~~~-------~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~ 235 (390)
..|++|++|.+..+.... ..++..++..+|.||+|.|.+|.+..+.. +..++|++|.+ ..|.....
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~---~~~~~L~~L~L----~~~~l~~~ 208 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK---KPRPNLKSLEI----ISGGLPDS 208 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS---CBCTTCSEEEE----ECSBCCHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc---ccCCCCcEEEE----ecCCCChH
Confidence 356777777776543211 13577888999999999999885433333 34789999999 66654321
Q ss_pred CCCcceEE-EecCccceEEeee--cc--cce------eee--ccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhh
Q 045124 236 DNVSLTFE-INTQNLVCLELRE--NF--FAQ------YIL--RNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFL 302 (390)
Q Consensus 236 ~~~~~~~~-i~ap~L~~L~~~~--~~--~~~------~~~--~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL 302 (390)
....+. ...|+|++|+++. .. +.. ..+ ..+|+|+.+++..+.. .......+.
T Consensus 209 --~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i-------------~~~~~~~la 273 (362)
T 2ra8_A 209 --VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE-------------QNVVVEMFL 273 (362)
T ss_dssp --HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT-------------HHHHHHHHH
T ss_pred --HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC-------------chHHHHHHH
Confidence 111122 1579999998852 11 100 112 3578899888853320 011112222
Q ss_pred --ccCCCccEEEEeccc
Q 045124 303 --PEVYNVNSLALSGCT 317 (390)
Q Consensus 303 --~~~p~L~~L~l~~~~ 317 (390)
..+|+|+.|.|+...
T Consensus 274 ~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 274 ESDILPQLETMDISAGV 290 (362)
T ss_dssp HCSSGGGCSEEECCSSC
T ss_pred hCccCCCCCEEECCCCC
Confidence 257889999986653
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.51 E-value=4.3e-05 Score=63.55 Aligned_cols=108 Identities=16% Similarity=0.075 Sum_probs=62.2
Q ss_pred CcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeEE
Q 045124 142 TALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNL 221 (390)
Q Consensus 142 ~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L 221 (390)
++|++|+++++.+...++.....+++|++|+|++..+.. .....+..++.|+.|++.++.........--..++|+.|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE--eChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 577777777776655554344567777888777766643 223345667778888777776532211000124677777
Q ss_pred EeeeeeccCCCCCCCCCcceEEEecCccceEEeeecc
Q 045124 222 NSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENF 258 (390)
Q Consensus 222 ~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 258 (390)
.+ .++.+... .....-..++|++|+++++.
T Consensus 106 ~l----~~N~l~~~---~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 106 AL----DTNQLKSV---PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp EC----CSSCCSCC---CTTTTTTCTTCCEEECCSSC
T ss_pred EC----cCCcceEe---CHHHhcCCcccCEEEecCCC
Confidence 77 55544321 01111235778888887653
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.51 E-value=9.9e-05 Score=71.31 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=71.0
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.++++|++..+. ...+| .+..+++|++|+++++.+..+|. ..++|++|+|++..+.. +.. +..++.
T Consensus 131 ~~L~~L~L~~n~-----l~~lp-~~~~l~~L~~L~l~~N~l~~lp~----~~~~L~~L~L~~n~l~~---l~~-~~~l~~ 196 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-----LEKLP-ELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEE---LPE-LQNLPF 196 (454)
T ss_dssp TTCCEEECCSSC-----CSSCC-CCTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS---CCC-CTTCTT
T ss_pred CCCCEEECcCCC-----CCCCc-ccCCCCCCCEEECCCCcCcccCC----CcccccEEECcCCcCCc---Ccc-ccCCCC
Confidence 466777775441 12355 46677888888888877655541 23578888888776654 222 567888
Q ss_pred cceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeec
Q 045124 194 LDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELREN 257 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~ 257 (390)
|+.|++.+|....+.. ..++|+.|.+ .+|..... .. ....++|++|++++.
T Consensus 197 L~~L~l~~N~l~~l~~----~~~~L~~L~l----~~n~l~~l----p~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 197 LTAIYADNNSLKKLPD----LPLSLESIVA----GNNILEEL----PE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp CCEEECCSSCCSSCCC----CCTTCCEEEC----CSSCCSSC----CC-CTTCTTCCEEECCSS
T ss_pred CCEEECCCCcCCcCCC----CcCcccEEEC----cCCcCCcc----cc-cCCCCCCCEEECCCC
Confidence 8888888876543322 2357777777 55554321 11 225566777777664
No 128
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.50 E-value=5.4e-05 Score=72.47 Aligned_cols=41 Identities=24% Similarity=0.454 Sum_probs=37.6
Q ss_pred CCCCCCcCCCCChHHHHHHHccCChHHHHHHHHhhhchHHh
Q 045124 2 PPRRRNFFYGLPDDILRHIIACLPTKNAVGTSLISRQWIDL 42 (390)
Q Consensus 2 ~~~~~D~is~LPd~iL~~Ils~Lp~~~~~rts~lSrrWr~l 42 (390)
|.-..|.++.||+|++.+||+||+.+++++++.+||+|+.+
T Consensus 12 ~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred ccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 44567999999999999999999999999999999999873
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.45 E-value=2.6e-05 Score=64.91 Aligned_cols=121 Identities=16% Similarity=0.043 Sum_probs=56.7
Q ss_pred ccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeEEEe
Q 045124 144 LEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNLNS 223 (390)
Q Consensus 144 L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i 223 (390)
.+.+++.++.+..+|. ..+++|++|+|.+..+.. .....+..++.|+.|++.++....+....--..++|+.|.+
T Consensus 9 ~~~l~~~~~~l~~~p~---~~~~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT---GIPSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSSCCT---TCCTTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCccCCC---CCCCCCcEEEeCCCcccE--eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 3455555555444441 223566666666655542 12234455666666666666543221100012356666666
Q ss_pred eeeeccCCCCCCCCCcceEEEecCccceEEeeecccce---eeeccCCcceeEEee
Q 045124 224 EFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQ---YILRNLNLLEKADIG 276 (390)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~---~~~~~~~~L~~l~l~ 276 (390)
.++.+... .....-..++|++|++++..... ..+.++++|+.+++.
T Consensus 84 ----~~N~l~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 84 ----HENKLQSL---PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp ----CSSCCCCC---CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ----CCCCcccc---CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 44443221 00011134566666666543211 123455666666664
No 130
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.43 E-value=3.8e-05 Score=73.42 Aligned_cols=41 Identities=24% Similarity=0.532 Sum_probs=37.3
Q ss_pred CCCCCCcCCCCChH----HHHHHHccCChHHHHHHHHhhhchHHh
Q 045124 2 PPRRRNFFYGLPDD----ILRHIIACLPTKNAVGTSLISRQWIDL 42 (390)
Q Consensus 2 ~~~~~D~is~LPd~----iL~~Ils~Lp~~~~~rts~lSrrWr~l 42 (390)
|.-..|.|+.||+| |+.+||++|+.+++++++.|||+|+++
T Consensus 4 ~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 4 IMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp CCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34567999999999 999999999999999999999999953
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.37 E-value=4.9e-05 Score=65.79 Aligned_cols=131 Identities=15% Similarity=0.092 Sum_probs=87.8
Q ss_pred CCeeEEEEEeccCCCCceecC-CC-CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcC
Q 045124 114 NNVVEVDIRVDNINEDNFLDL-PS-NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCC 191 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~l-p~-~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~c 191 (390)
..+++|+|..+. ...+ |. .+..+++|++|+|+++.+...++..+..+++|++|+|++..+.. .....+.++
T Consensus 32 ~~~~~L~L~~N~-----l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l 104 (220)
T 2v70_A 32 QYTAELRLNNNE-----FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN--VQHKMFKGL 104 (220)
T ss_dssp TTCSEEECCSSC-----CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCGGGGTTC
T ss_pred CCCCEEEcCCCc-----CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc--cCHhHhcCC
Confidence 355777775541 1223 32 34568999999999998766665467789999999999988764 334567789
Q ss_pred CccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecc
Q 045124 192 PVLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENF 258 (390)
Q Consensus 192 p~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 258 (390)
+.|++|+|.++.........-...++|+.|.+ .++.+... .....-..++|+.|+++++.
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L----~~N~l~~~---~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL----YDNQITTV---APGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC----TTSCCCCB---CTTTTTTCTTCCEEECCSCC
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEEC----CCCcCCEE---CHHHhcCCCCCCEEEecCcC
Confidence 99999999998764321100013578999999 66665421 01111246889999998863
No 132
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.32 E-value=9.6e-07 Score=83.18 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=49.9
Q ss_pred HHhCCeeEEEEEeccCCCCceecCCCCCc-cCCcccEEEEcCeeecCCC-CCCcccCCcccEEEeeeEEECCCchHh---
Q 045124 111 GWTNNVVEVDIRVDNINEDNFLDLPSNLC-TSTALEVLKLQGNITLDPD-PDQRVIFPSLRILHMDVIQLGVSGHHR--- 185 (390)
Q Consensus 111 ~~~~~v~~L~L~~~~~~~~~~~~lp~~l~-~c~~L~~L~L~~~~~~~~~-~~~~~~~~~Lk~L~L~~v~~~~~~~l~--- 185 (390)
.+...+++|+|..+.........+...+. .+++|++|+|++|.+.+.. ......+++|++|+|+++.+.+ ....
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~-~~~~~L~ 147 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP-EACKDLR 147 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH-HHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH-HHHHHHH
Confidence 34567788877554221111112222222 2357888888877542210 0012345678888888777764 3332
Q ss_pred Hhh-hcCCccceEEEeceec
Q 045124 186 DLY-RCCPVLDDLYVRGNIA 204 (390)
Q Consensus 186 ~ll-~~cp~Le~L~l~~c~~ 204 (390)
..+ ..++.|++|+|.+|..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l 167 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPL 167 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCC
T ss_pred HHHHhcCCccceeeCCCCCC
Confidence 223 3577788888877764
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.32 E-value=0.0002 Score=69.16 Aligned_cols=115 Identities=18% Similarity=0.127 Sum_probs=54.9
Q ss_pred CcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeEE
Q 045124 142 TALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNL 221 (390)
Q Consensus 142 ~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L 221 (390)
++|++|++++|.+..+| ....+++|++|++++..+.. +.. ..+.|+.|++.+|....+.. + -..++|+.|
T Consensus 131 ~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~---lp~---~~~~L~~L~L~~n~l~~l~~-~-~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKK---LPD---LPPSLEFIAAGNNQLEELPE-L-QNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSC---CCC---CCTTCCEEECCSSCCSSCCC-C-TTCTTCCEE
T ss_pred CCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcCcc---cCC---CcccccEEECcCCcCCcCcc-c-cCCCCCCEE
Confidence 35555555555544444 34455555555555544432 111 12355555555554432222 1 123556666
Q ss_pred EeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc-eeeeccCCcceeEEeee
Q 045124 222 NSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA-QYILRNLNLLEKADIGI 277 (390)
Q Consensus 222 ~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~-~~~~~~~~~L~~l~l~~ 277 (390)
.+ .+|.+.. +.-..++|++|+++++... ...+.++++|++++++.
T Consensus 201 ~l----~~N~l~~-------l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 201 YA----DNNSLKK-------LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 246 (454)
T ss_dssp EC----CSSCCSS-------CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred EC----CCCcCCc-------CCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCC
Confidence 66 4444321 1112246677766664321 11355667777777643
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.28 E-value=7.2e-05 Score=74.38 Aligned_cols=97 Identities=18% Similarity=0.092 Sum_probs=60.4
Q ss_pred CeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCcc
Q 045124 115 NVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVL 194 (390)
Q Consensus 115 ~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~L 194 (390)
.++.|+|..+. ...+|. +..+++|+.|+|++|.+..+|. ....+++|++|+|++..+.+ +. -+..++.|
T Consensus 442 ~L~~L~Ls~n~-----l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~---lp-~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKD-----LTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN---VD-GVANLPRL 510 (567)
T ss_dssp TCSEEECTTSC-----CSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCC---CG-GGTTCSSC
T ss_pred CceEEEecCCC-----CCCCcC-ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCC---Cc-ccCCCCCC
Confidence 46666664431 223555 6667788888888777666653 55677788888887776653 33 45677888
Q ss_pred ceEEEeceecCCCC--eeEEEEccceeEEEe
Q 045124 195 DDLYVRGNIAEPLP--FQFDVVSTSVRNLNS 223 (390)
Q Consensus 195 e~L~l~~c~~~~~~--~~l~i~~~~L~~L~i 223 (390)
+.|+|++|...... ..+ -..++|+.|.+
T Consensus 511 ~~L~Ls~N~l~~~~~p~~l-~~l~~L~~L~L 540 (567)
T 1dce_A 511 QELLLCNNRLQQSAAIQPL-VSCPRLVLLNL 540 (567)
T ss_dssp CEEECCSSCCCSSSTTGGG-GGCTTCCEEEC
T ss_pred cEEECCCCCCCCCCCcHHH-hcCCCCCEEEe
Confidence 88888777654331 101 13466777777
No 135
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.24 E-value=0.00043 Score=68.65 Aligned_cols=133 Identities=18% Similarity=0.145 Sum_probs=93.5
Q ss_pred hCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 113 TNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 113 ~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
..+++.|+|..+.. ..+|. +.. +|++|+|++|.+..+| . .+++|+.|+|++..+.. +.. .++
T Consensus 99 l~~L~~L~Ls~N~l-----~~ip~-l~~--~L~~L~Ls~N~l~~lp--~--~l~~L~~L~Ls~N~l~~---lp~---~l~ 160 (571)
T 3cvr_A 99 PASLEYLDACDNRL-----STLPE-LPA--SLKHLDVDNNQLTMLP--E--LPALLEYINADNNQLTM---LPE---LPT 160 (571)
T ss_dssp CTTCCEEECCSSCC-----SCCCC-CCT--TCCEEECCSSCCSCCC--C--CCTTCCEEECCSSCCSC---CCC---CCT
T ss_pred cCCCCEEEccCCCC-----CCcch-hhc--CCCEEECCCCcCCCCC--C--cCccccEEeCCCCccCc---CCC---cCC
Confidence 36788888865522 23666 433 9999999999887777 3 78999999999988764 222 579
Q ss_pred ccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCcc-------ceEEeeecccc--eee
Q 045124 193 VLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNL-------VCLELRENFFA--QYI 263 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L-------~~L~~~~~~~~--~~~ 263 (390)
.|+.|+|.+|....+.. +. ++|+.|.+ .++.+... .. +. ++| +.|+++++... +..
T Consensus 161 ~L~~L~Ls~N~L~~lp~---l~-~~L~~L~L----s~N~L~~l----p~--~~-~~L~~~~~~L~~L~Ls~N~l~~lp~~ 225 (571)
T 3cvr_A 161 SLEVLSVRNNQLTFLPE---LP-ESLEALDV----STNLLESL----PA--VP-VRNHHSEETEIFFRCRENRITHIPEN 225 (571)
T ss_dssp TCCEEECCSSCCSCCCC---CC-TTCCEEEC----CSSCCSSC----CC--CC---------CCEEEECCSSCCCCCCGG
T ss_pred CcCEEECCCCCCCCcch---hh-CCCCEEEC----cCCCCCch----hh--HH-HhhhcccccceEEecCCCcceecCHH
Confidence 99999999998755544 22 89999999 67766532 11 21 266 99999886432 223
Q ss_pred eccCCcceeEEeeee
Q 045124 264 LRNLNLLEKADIGIG 278 (390)
Q Consensus 264 ~~~~~~L~~l~l~~~ 278 (390)
+.++++|+.++++.+
T Consensus 226 l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 226 ILSLDPTCTIILEDN 240 (571)
T ss_dssp GGGSCTTEEEECCSS
T ss_pred HhcCCCCCEEEeeCC
Confidence 566889999988544
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.23 E-value=0.00024 Score=58.73 Aligned_cols=94 Identities=19% Similarity=0.171 Sum_probs=65.4
Q ss_pred eecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCee
Q 045124 131 FLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQ 210 (390)
Q Consensus 131 ~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~ 210 (390)
...+|..+. ++|+.|+|+++.+...++..+..+++|++|+|++..+.. .-...+..++.|+.|+|.++....+...
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~l~~~~~~ 96 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--LPAGVFDKLTQLTQLSLNDNQLKSIPRG 96 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc--cChhhccCCCCCCEEECCCCccCEeCHH
Confidence 345666553 789999999988877765567788999999999887763 2234567889999999998876432210
Q ss_pred EEEEccceeEEEeeeeeccCCC
Q 045124 211 FDVVSTSVRNLNSEFYLEDKHF 232 (390)
Q Consensus 211 l~i~~~~L~~L~i~~~~~~~~~ 232 (390)
.--..++|+.|.+ .++.+
T Consensus 97 ~~~~l~~L~~L~L----~~N~~ 114 (170)
T 3g39_A 97 AFDNLKSLTHIWL----LNNPW 114 (170)
T ss_dssp TTTTCTTCCEEEC----CSSCB
T ss_pred HhcCCCCCCEEEe----CCCCC
Confidence 0013478999999 55544
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.21 E-value=0.00026 Score=58.82 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=66.0
Q ss_pred eecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCee
Q 045124 131 FLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQ 210 (390)
Q Consensus 131 ~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~ 210 (390)
...+|..+. ++|+.|+|+++.+...++..+..+++|++|+|++..+.. .-..++..++.|+.|+|.++....+...
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~l~~l~~~ 99 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLNDNHLKSIPRG 99 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--cChhHhCCcchhhEEECCCCccceeCHH
Confidence 345666554 789999999988877765567789999999999887764 2234567789999999998876432210
Q ss_pred EEEEccceeEEEeeeeeccCCCC
Q 045124 211 FDVVSTSVRNLNSEFYLEDKHFD 233 (390)
Q Consensus 211 l~i~~~~L~~L~i~~~~~~~~~~ 233 (390)
.--..++|+.|.+ .++.+.
T Consensus 100 ~~~~l~~L~~L~L----~~N~~~ 118 (174)
T 2r9u_A 100 AFDNLKSLTHIYL----YNNPWD 118 (174)
T ss_dssp TTTTCTTCSEEEC----CSSCBC
T ss_pred HhccccCCCEEEe----CCCCcc
Confidence 0013478999999 555543
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.20 E-value=9.2e-05 Score=62.55 Aligned_cols=115 Identities=17% Similarity=0.083 Sum_probs=74.0
Q ss_pred ecCCCCCccCCcccEEEEcCeeecCCCCC-CcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCee
Q 045124 132 LDLPSNLCTSTALEVLKLQGNITLDPDPD-QRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQ 210 (390)
Q Consensus 132 ~~lp~~l~~c~~L~~L~L~~~~~~~~~~~-~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~ 210 (390)
..+|..+.. +|+.|.|+++.+...++. ....+++|++|+|++..+.+ .....+.+++.|+.|+|.++.......
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~- 95 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG--IEPNAFEGASHIQELQLGENKIKEISN- 95 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSCCCCEECS-
T ss_pred CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC--cCHhHcCCcccCCEEECCCCcCCccCH-
Confidence 456665543 888999988877666532 35688899999999887763 234456778999999998887532111
Q ss_pred EEE-EccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecc
Q 045124 211 FDV-VSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENF 258 (390)
Q Consensus 211 l~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 258 (390)
-.+ ..++|+.|.+ .++.+... .....-..++|++|++++..
T Consensus 96 ~~~~~l~~L~~L~L----~~N~l~~~---~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 96 KMFLGLHQLKTLNL----YDNQISCV---MPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SSSTTCTTCCEEEC----CSSCCCEE---CTTSSTTCTTCCEEECTTCC
T ss_pred HHhcCCCCCCEEEC----CCCcCCee---CHHHhhcCCCCCEEEeCCCC
Confidence 001 3478899998 56554311 00111245788999987753
No 139
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.17 E-value=0.00022 Score=66.54 Aligned_cols=130 Identities=16% Similarity=0.128 Sum_probs=85.4
Q ss_pred CCeeEEEEEeccCCCCceecCC-CCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLP-SNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp-~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
.+++.|+|..+. ...++ ..+..+++|+.|+|+++.+..+++..+..+++|++|+|++..+.. .....+..++
T Consensus 64 ~~L~~L~L~~N~-----i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~ 136 (361)
T 2xot_A 64 TNLHSLLLSHNH-----LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV--VDRNAFEDMA 136 (361)
T ss_dssp TTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--ECTTTTTTCT
T ss_pred cccCEEECCCCc-----CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE--ECHHHhCCcc
Confidence 578888886542 22344 346678999999999998766665456789999999999887753 2234567899
Q ss_pred ccceEEEeceecCCCCee-EE--EEccceeEEEeeeeeccCCCCCCCCCcceEEEecCc--cceEEeeec
Q 045124 193 VLDDLYVRGNIAEPLPFQ-FD--VVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQN--LVCLELREN 257 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~-l~--i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~--L~~L~~~~~ 257 (390)
.|+.|+|.+|....+... +. -..++|+.|.+ .++.+... ........|+ |+.|.+.++
T Consensus 137 ~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L----~~N~l~~l---~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL----SSNKLKKL---PLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp TCCEEECCSSCCCSCCGGGTC----CTTCCEEEC----CSSCCCCC---CHHHHHHSCHHHHTTEECCSS
T ss_pred cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC----CCCCCCcc---CHHHhhhccHhhcceEEecCC
Confidence 999999999976543320 10 24688999999 66655421 0001112343 467777764
No 140
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.17 E-value=0.00048 Score=63.95 Aligned_cols=175 Identities=17% Similarity=0.130 Sum_probs=87.5
Q ss_pred CCeeEEEEEeccCCCCceecCCCC-CccCCcccEEEEcCeeecC-CCCCCcccCCcccEEEeeeE-EECCCchHhHhhhc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSN-LCTSTALEVLKLQGNITLD-PDPDQRVIFPSLRILHMDVI-QLGVSGHHRDLYRC 190 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~-l~~c~~L~~L~L~~~~~~~-~~~~~~~~~~~Lk~L~L~~v-~~~~~~~l~~ll~~ 190 (390)
.++++|+|..+. -..+|.. +..+++|++|+|++|.+.. ++...+.++++|+++.+.+. .+. ..-...+..
T Consensus 30 ~~l~~L~Ls~N~-----i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~--~l~~~~f~~ 102 (350)
T 4ay9_X 30 RNAIELRFVLTK-----LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL--YINPEAFQN 102 (350)
T ss_dssp TTCSEEEEESCC-----CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC--EECTTSBCC
T ss_pred CCCCEEEccCCc-----CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc--ccCchhhhh
Confidence 467778776542 2356654 3457888888888776433 33224456666665444332 221 111334667
Q ss_pred CCccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEE-----ecCccceEEeeeccccee--e
Q 045124 191 CPVLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEI-----NTQNLVCLELRENFFAQY--I 263 (390)
Q Consensus 191 cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i-----~ap~L~~L~~~~~~~~~~--~ 263 (390)
++.|+.|.+.++..............++..|.+ .++... ..+.. ....++.|.+++...... .
T Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l----~~~~~i------~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~ 172 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI----QDNINI------HTIERNSFVGLSFESVILWLNKNGIQEIHNS 172 (350)
T ss_dssp CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE----ESCTTC------CEECTTSSTTSBSSCEEEECCSSCCCEECTT
T ss_pred ccccccccccccccccCCchhhcccchhhhhhh----cccccc------ccccccchhhcchhhhhhccccccccCCChh
Confidence 888888888887653222100123455666666 332211 11110 123466666665432111 1
Q ss_pred eccCCcceeEEeeeeeeeecCCCCccCCCccHHHHH-hhhccCCCccEEEEeccccc
Q 045124 264 LRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERI-SFLPEVYNVNSLALSGCTVG 319 (390)
Q Consensus 264 ~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~-~lL~~~p~L~~L~l~~~~~~ 319 (390)
..+.++|+++.+.....+ ..+. ..+..+++|+.|+|+.....
T Consensus 173 ~f~~~~L~~l~l~~~n~l--------------~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 173 AFNGTQLDELNLSDNNNL--------------EELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SSTTEEEEEEECTTCTTC--------------CCCCTTTTTTEECCSEEECTTSCCC
T ss_pred hccccchhHHhhccCCcc--------------cCCCHHHhccCcccchhhcCCCCcC
Confidence 123345555555221110 0011 23567788888888776543
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.17 E-value=0.00015 Score=60.32 Aligned_cols=103 Identities=17% Similarity=0.101 Sum_probs=65.4
Q ss_pred ccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeEEEe
Q 045124 144 LEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNLNS 223 (390)
Q Consensus 144 L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i 223 (390)
-+.++++++.+..+|. . -.++|++|+|++..+.. .....+..++.|+.|+|.++....+....--..++|+.|.+
T Consensus 14 ~~~l~~~~n~l~~iP~--~-~~~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPA--G-IPTDKQRLWLNNNQITK--LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SSEEECCSSCCSSCCS--C-CCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCCCccCC--C-cCCCCcEEEeCCCCccc--cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 3677888777766663 1 23889999998887753 22455677889999999888764332100013478889988
Q ss_pred eeeeccCCCCCCCCCcceEEEecCccceEEeeecc
Q 045124 224 EFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENF 258 (390)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 258 (390)
.++.+... .....-..++|+.|+++++.
T Consensus 89 ----~~N~l~~l---~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 89 ----NDNHLKSI---PRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp ----CSSCCCCC---CTTTTTTCTTCSEEECCSSC
T ss_pred ----CCCcccee---CHHHhccccCCCEEEeCCCC
Confidence 56555321 01112246788888888753
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.14 E-value=0.00016 Score=59.83 Aligned_cols=104 Identities=15% Similarity=0.053 Sum_probs=66.5
Q ss_pred cccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeEEE
Q 045124 143 ALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNLN 222 (390)
Q Consensus 143 ~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~ 222 (390)
+.+.++++++.+..+|. . -.++|++|+|++..+.. .....+.+++.|+.|+|.++....+....--..++|+.|.
T Consensus 10 ~~~~l~~s~n~l~~ip~--~-~~~~l~~L~L~~N~i~~--~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT--G-IPTTTQVLYLYDNQITK--LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp ETTEEECTTSCCSSCCS--C-CCTTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCCcCccCc--c-CCCCCcEEEcCCCcCCc--cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 46788888887777762 2 24888999998877753 2244567788999999988876433210001347888998
Q ss_pred eeeeeccCCCCCCCCCcceEEEecCccceEEeeecc
Q 045124 223 SEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENF 258 (390)
Q Consensus 223 i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 258 (390)
+ .++.+... .....-..++|+.|+++++.
T Consensus 85 L----~~N~l~~~---~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 85 L----NDNQLKSI---PRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp C----CSSCCCCC---CTTTTTTCTTCCEEECCSSC
T ss_pred C----CCCccCEe---CHHHhcCCCCCCEEEeCCCC
Confidence 8 56555322 01112246788888888753
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.00 E-value=0.00033 Score=59.04 Aligned_cols=107 Identities=14% Similarity=0.078 Sum_probs=74.4
Q ss_pred CeeEEEEEeccCCCCceecCCCC--CccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 115 NVVEVDIRVDNINEDNFLDLPSN--LCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 115 ~v~~L~L~~~~~~~~~~~~lp~~--l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
.+++|++.... ...+|+. +...++|++|+|+++.+...++..+..+++|++|+|++..+.+ .....+.+.+
T Consensus 30 ~l~~L~l~~n~-----i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~ 102 (192)
T 1w8a_A 30 HTTELLLNDNE-----LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE--ISNKMFLGLH 102 (192)
T ss_dssp TCSEEECCSCC-----CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE--ECSSSSTTCT
T ss_pred CCCEEECCCCc-----CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCc--cCHHHhcCCC
Confidence 67888886542 2344442 5568999999999998876655567789999999999988764 2234467789
Q ss_pred ccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCC
Q 045124 193 VLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHF 232 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~ 232 (390)
.|+.|+|.++.........--..++|+.|.+ .++.+
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L----~~N~l 138 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNL----ASNPF 138 (192)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEEC----TTCCB
T ss_pred CCCEEECCCCcCCeeCHHHhhcCCCCCEEEe----CCCCc
Confidence 9999999998753211000013478999999 56554
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.99 E-value=0.00018 Score=66.60 Aligned_cols=89 Identities=20% Similarity=0.135 Sum_probs=63.2
Q ss_pred eecCCCCCccCCcccEEEEcC-eeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCe
Q 045124 131 FLDLPSNLCTSTALEVLKLQG-NITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPF 209 (390)
Q Consensus 131 ~~~lp~~l~~c~~L~~L~L~~-~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~ 209 (390)
...+|. +..+++|+.|+|++ +.+..+++..+..+++|+.|+|++..+.. .....+.+++.|+.|+|.++....+..
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--VAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--ECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce--eCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 445787 77788999999986 76665654456788999999999887753 334566789999999999987643321
Q ss_pred eEEEEccceeEEEe
Q 045124 210 QFDVVSTSVRNLNS 223 (390)
Q Consensus 210 ~l~i~~~~L~~L~i 223 (390)
-.+...+|+.|.+
T Consensus 98 -~~~~~~~L~~l~l 110 (347)
T 2ifg_A 98 -KTVQGLSLQELVL 110 (347)
T ss_dssp -TTTCSCCCCEEEC
T ss_pred -HHcccCCceEEEe
Confidence 0012234888888
No 145
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.86 E-value=0.0003 Score=69.85 Aligned_cols=85 Identities=25% Similarity=0.253 Sum_probs=69.4
Q ss_pred hCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 113 TNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 113 ~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
..+++.|+|..+. ...+|..+..+++|+.|+|++|.+..+| ....+++|++|+|++..+.+ -.....+..++
T Consensus 462 l~~L~~L~Ls~N~-----l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~-~~~p~~l~~l~ 533 (567)
T 1dce_A 462 LLLVTHLDLSHNR-----LRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQ-SAAIQPLVSCP 533 (567)
T ss_dssp GTTCCEEECCSSC-----CCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCS-SSTTGGGGGCT
T ss_pred cccCcEeecCccc-----ccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCC-CCCcHHHhcCC
Confidence 3688999997652 2278888889999999999999887777 77889999999999988864 21145678899
Q ss_pred ccceEEEeceecC
Q 045124 193 VLDDLYVRGNIAE 205 (390)
Q Consensus 193 ~Le~L~l~~c~~~ 205 (390)
.|+.|+|.+|...
T Consensus 534 ~L~~L~L~~N~l~ 546 (567)
T 1dce_A 534 RLVLLNLQGNSLC 546 (567)
T ss_dssp TCCEEECTTSGGG
T ss_pred CCCEEEecCCcCC
Confidence 9999999999763
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.85 E-value=0.00082 Score=56.70 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=76.4
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.++++|+|..+. ...+|..+..+++|+.|+|+++.+...++..+..+++|++|+|++..+.. .....+.+++.
T Consensus 31 ~~l~~L~L~~n~-----i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~--i~~~~f~~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDGNQ-----FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC--IPPRTFDGLKS 103 (193)
T ss_dssp TTCCEEECCSSC-----CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTT
T ss_pred CCCCEEECCCCc-----CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE--eCHHHhCCCCC
Confidence 478888886552 23667777788999999999998877775567889999999999988764 22345678999
Q ss_pred cceEEEeceecCCCCeeEEEEccceeEEEe
Q 045124 194 LDDLYVRGNIAEPLPFQFDVVSTSVRNLNS 223 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i 223 (390)
|+.|+|.++....+....--..++|+.|.+
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 104 LRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 999999998764322100013478999999
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.78 E-value=0.00012 Score=74.92 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=30.9
Q ss_pred cCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceec
Q 045124 133 DLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 133 ~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
.+|..++.+++|+.|+|++|.+..+|. ....+++|+.|+|++..+.. +..-+..++.|+.|+|.+|..
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTS---LPAELGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSS---CCSSGGGGTTCSEEECCSSCC
T ss_pred CCChhhcCCCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCc---cChhhcCCCCCCEEECCCCCC
Confidence 344444445555555555554443331 23345555555555444431 222234445555555555443
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.72 E-value=0.00023 Score=72.92 Aligned_cols=110 Identities=15% Similarity=0.002 Sum_probs=68.3
Q ss_pred CCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEE
Q 045124 135 PSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVV 214 (390)
Q Consensus 135 p~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~ 214 (390)
|..+..+++|+.|+|+++.+..+|. ....+++|++|+|++..+.. +..-+..++.|+.|+|++|....+...+ -.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~ 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISA-NIFKYDFLTRLYLNGNSLTE---LPAEIKNLSNLRVLDLSHNRLTSLPAEL-GS 291 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCG-GGGGCCSCSCCBCTTSCCSC---CCGGGGGGTTCCEEECTTSCCSSCCSSG-GG
T ss_pred hhhhccCCCCcEEECCCCCCCCCCh-hhcCCCCCCEEEeeCCcCcc---cChhhhCCCCCCEEeCcCCcCCccChhh-cC
Confidence 4455567888888888887766653 44578888888888877652 3344577888888888888764332101 13
Q ss_pred ccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeec
Q 045124 215 STSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELREN 257 (390)
Q Consensus 215 ~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~ 257 (390)
.++|+.|.+ .++.+... ....-..++|+.|+++++
T Consensus 292 l~~L~~L~L----~~N~l~~l----p~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 292 CFQLKYFYF----FDNMVTTL----PWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp GTTCSEEEC----CSSCCCCC----CSSTTSCTTCCCEECTTS
T ss_pred CCCCCEEEC----CCCCCCcc----ChhhhcCCCccEEeCCCC
Confidence 467888888 56654321 111225677888887764
No 149
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.50 E-value=0.002 Score=59.70 Aligned_cols=133 Identities=12% Similarity=0.077 Sum_probs=80.0
Q ss_pred eecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchH-hHhhhcCCccceEEEeceecCCCCe
Q 045124 131 FLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHH-RDLYRCCPVLDDLYVRGNIAEPLPF 209 (390)
Q Consensus 131 ~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l-~~ll~~cp~Le~L~l~~c~~~~~~~ 209 (390)
...+|..+ .+++++|+|+++.+..+|+..+.++++|++|+|++..+.+ .+ ...+.+++.|.++.+..+.. +..
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~--~i~~~~f~~L~~l~~~l~~~~N~--l~~ 94 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE--VIEADVFSNLPKLHEIRIEKANN--LLY 94 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC--EECTTSBCSCTTCCEEEEEEETT--CCE
T ss_pred CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC--ccChhHhhcchhhhhhhcccCCc--ccc
Confidence 34567655 3589999999998877775567889999999999876542 12 23466788888766655432 222
Q ss_pred eEE----EEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc-ce---eeeccC-CcceeEEeee
Q 045124 210 QFD----VVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF-AQ---YILRNL-NLLEKADIGI 277 (390)
Q Consensus 210 ~l~----i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~-~~---~~~~~~-~~L~~l~l~~ 277 (390)
+. -..++|+.|.+ .++..... .........++..+.+.+... .. ..+..+ ..++.++++.
T Consensus 95 -l~~~~f~~l~~L~~L~l----~~n~l~~~---~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 95 -INPEAFQNLPNLQYLLI----SNTGIKHL---PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp -ECTTSBCCCTTCCEEEE----EEECCSSC---CCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred -cCchhhhhccccccccc----cccccccC---Cchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 11 14578999999 56554321 111223455677777765321 11 122333 3566666643
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.50 E-value=0.00071 Score=57.22 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=77.5
Q ss_pred hCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 113 TNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 113 ~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
...+++|++..+.. ..+| .+..+++|+.|+|++|.+..+|. ....+++|++|+|++..+.+ +. -+..++
T Consensus 47 l~~L~~L~ls~n~l-----~~l~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~---l~-~~~~l~ 115 (198)
T 1ds9_A 47 LKACKHLALSTNNI-----EKIS-SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIAS---LS-GIEKLV 115 (198)
T ss_dssp TTTCSEEECSEEEE-----SCCC-CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCC---HH-HHHHHH
T ss_pred CCCCCEEECCCCCC-----cccc-ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCc---CC-ccccCC
Confidence 46889999976522 2356 67778999999999998877762 34457999999999998875 44 367899
Q ss_pred ccceEEEeceecCCCCeeEE--EEccceeEEEeeeeeccCCC
Q 045124 193 VLDDLYVRGNIAEPLPFQFD--VVSTSVRNLNSEFYLEDKHF 232 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~--i~~~~L~~L~i~~~~~~~~~ 232 (390)
.|+.|++.+|....... +. -..++|+.|.+ .++.+
T Consensus 116 ~L~~L~l~~N~i~~~~~-~~~l~~l~~L~~L~l----~~N~l 152 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGE-IDKLAALDKLEDLLL----AGNPL 152 (198)
T ss_dssp HSSEEEESEEECCCHHH-HHHHTTTTTCSEEEE----CSCHH
T ss_pred CCCEEECCCCcCCchhH-HHHHhcCCCCCEEEe----cCCcc
Confidence 99999999998743221 00 14578999999 66654
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.23 E-value=0.0006 Score=57.19 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=31.9
Q ss_pred ccCCcccEEEEcCeeecCCC----CCCcccCCcccEEEeeeEEECCCch---HhHhhhcCCccceEEE--eceec
Q 045124 139 CTSTALEVLKLQGNITLDPD----PDQRVIFPSLRILHMDVIQLGVSGH---HRDLYRCCPVLDDLYV--RGNIA 204 (390)
Q Consensus 139 ~~c~~L~~L~L~~~~~~~~~----~~~~~~~~~Lk~L~L~~v~~~~~~~---l~~ll~~cp~Le~L~l--~~c~~ 204 (390)
..+++|++|+|++|.+.+.. .......++|++|+|+++.+.+ .. +...+..++.|++|+| .+|..
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~-~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG-SGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH-HHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH-HHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 34455666666665432100 0011234556666666666654 22 3344455666666666 44443
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.06 E-value=0.00012 Score=61.53 Aligned_cols=90 Identities=16% Similarity=0.068 Sum_probs=44.2
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCC----CCCcccCCcccEEEe--eeEEECCC--chHh
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPD----PDQRVIFPSLRILHM--DVIQLGVS--GHHR 185 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~----~~~~~~~~~Lk~L~L--~~v~~~~~--~~l~ 185 (390)
..+++|+|..+..++.....+...+..+++|++|+|++|.+.+.. .......++|++|+| .+..+.+. ..+.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 456666665442221222223333334456666766666542200 002234456667776 55555541 1244
Q ss_pred HhhhcCCccceEEEecee
Q 045124 186 DLYRCCPVLDDLYVRGNI 203 (390)
Q Consensus 186 ~ll~~cp~Le~L~l~~c~ 203 (390)
..+..++.|++|+|.+|.
T Consensus 145 ~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHCSSCCEEECCCSS
T ss_pred HHHHhCCCcCEEeccCCC
Confidence 455566666666666654
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.82 E-value=0.0028 Score=58.15 Aligned_cols=36 Identities=14% Similarity=0.047 Sum_probs=26.5
Q ss_pred CCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEE
Q 045124 141 STALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQ 177 (390)
Q Consensus 141 c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~ 177 (390)
|++|+.|.|.. .+..++...+.+|++|++|+|....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~ 135 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT 135 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC
Confidence 89999999987 4444554467789999999997653
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.36 E-value=0.0063 Score=56.08 Aligned_cols=83 Identities=20% Similarity=0.170 Sum_probs=59.0
Q ss_pred CCeeEEEEEe-ccCCCCceecCCC-CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcC
Q 045124 114 NNVVEVDIRV-DNINEDNFLDLPS-NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCC 191 (390)
Q Consensus 114 ~~v~~L~L~~-~~~~~~~~~~lp~-~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~c 191 (390)
.++++|+|.. + ....+|+ .+..+++|+.|+|+++.+...++..+..+++|+.|+|++..+.. .-..++...
T Consensus 31 ~~L~~L~l~~~n-----~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~~ 103 (347)
T 2ifg_A 31 ENLTELYIENQQ-----HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES--LSWKTVQGL 103 (347)
T ss_dssp SCCSEEECCSCS-----SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC--CCSTTTCSC
T ss_pred CCeeEEEccCCC-----CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce--eCHHHcccC
Confidence 4688888864 3 1234453 45678999999999998766665566789999999999887764 112334444
Q ss_pred CccceEEEeceec
Q 045124 192 PVLDDLYVRGNIA 204 (390)
Q Consensus 192 p~Le~L~l~~c~~ 204 (390)
+ |+.|.|.++..
T Consensus 104 ~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 104 S-LQELVLSGNPL 115 (347)
T ss_dssp C-CCEEECCSSCC
T ss_pred C-ceEEEeeCCCc
Confidence 4 99999988765
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.32 E-value=0.004 Score=58.27 Aligned_cols=139 Identities=16% Similarity=0.082 Sum_probs=83.0
Q ss_pred ceeEEEEEEccCCChhHHHHHHHHHHhCCeeEEEEEeccCCCCceecCCCCC-ccCCcccEEEEcCeeecCCCC----CC
Q 045124 87 VIRRFYLHCLQSYDAEVLRDWVVRGWTNNVVEVDIRVDNINEDNFLDLPSNL-CTSTALEVLKLQGNITLDPDP----DQ 161 (390)
Q Consensus 87 ~l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~L~~~~~~~~~~~~lp~~l-~~c~~L~~L~L~~~~~~~~~~----~~ 161 (390)
.++.+.+..... ....+...... -.++++|+|..+.........+...+ ..+++|++|+|++|.+.+... ..
T Consensus 102 ~L~~L~Ls~n~l-~~~~~~~l~~~--L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 102 ALDEVNLASCQL-DPAGLRTLLPV--FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp CEEEEECTTCCC-CHHHHHHTHHH--HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CceEEEecCCCC-CHHHHHHHHHH--HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 488877755432 22222222111 23789999976632211111221122 235789999999997533110 01
Q ss_pred cccCCcccEEEeeeEEECCC--chHhHhhhcCCccceEEEeceecCCCCeeEEE-----EccceeEEEeeeeeccCCCC
Q 045124 162 RVIFPSLRILHMDVIQLGVS--GHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDV-----VSTSVRNLNSEFYLEDKHFD 233 (390)
Q Consensus 162 ~~~~~~Lk~L~L~~v~~~~~--~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i-----~~~~L~~L~i~~~~~~~~~~ 233 (390)
....++|++|+|+++.+.+. ..+...+..++.|++|+|.+|...+... ..+ ..++|+.|.+ .+|.+.
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~-~~l~~~L~~~~~L~~L~L----s~N~i~ 252 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA-LALARAAREHPSLELLHL----YFNELS 252 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH-HHHHHHHHHCSSCCEEEC----TTSSCC
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH-HHHHHHHHhCCCCCEEec----cCCCCC
Confidence 24678999999999988751 2345567788999999999997632111 001 3488999999 677654
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=92.95 E-value=0.019 Score=54.27 Aligned_cols=58 Identities=9% Similarity=0.077 Sum_probs=26.8
Q ss_pred cCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEec
Q 045124 140 TSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRG 201 (390)
Q Consensus 140 ~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~ 201 (390)
.|.+|+.+.|..+.+..++. ....+.+|+++.|..- +. .--...+.+|+.|+.+.+..
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~-~aF~~~~L~~l~lp~~-l~--~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPA-STFVYAGIEEVLLPVT-LK--EIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TCTTCCEEECTTSCCSEECT-TTTTTCCCSEEECCTT-CC--EECTTTTTTCTTCCCEECCT
T ss_pred CcccCCeeecCCCcceEech-hhEeecccCEEEeCCc-hh--eehhhHhhCCCCCCEEecCC
Confidence 45666666665444333332 1222455555555421 00 00122455677777777654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.83 E-value=0.017 Score=51.12 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=36.9
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCC--cccEEEeeeEEECCC-----chHhH
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFP--SLRILHMDVIQLGVS-----GHHRD 186 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~--~Lk~L~L~~v~~~~~-----~~l~~ 186 (390)
..++.|+|..+.. .....+|..+..+++|+.|+|+++.+.... ....++ +|++|+|.+..+... .-...
T Consensus 170 ~~L~~L~Ls~N~l--~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 170 PELLSLNLSNNRL--YRLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp TTCCEEECTTSCC--CCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred CCCCEEECCCCCC--CCCccchhHHhhCCCCCEEECCCCccCCch--hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 3566666644311 111133333344566666666666544332 222233 566666655544320 11234
Q ss_pred hhhcCCccceE
Q 045124 187 LYRCCPVLDDL 197 (390)
Q Consensus 187 ll~~cp~Le~L 197 (390)
++..+|+|+.|
T Consensus 246 il~~~P~L~~L 256 (267)
T 3rw6_A 246 IRERFPKLLRL 256 (267)
T ss_dssp HHHHCTTCCEE
T ss_pred HHHHCcccCeE
Confidence 55566666655
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=92.73 E-value=0.03 Score=51.13 Aligned_cols=35 Identities=9% Similarity=-0.123 Sum_probs=17.1
Q ss_pred CCcccEEEEcCeeecCCCCCCcccCCcccEEEeee
Q 045124 141 STALEVLKLQGNITLDPDPDQRVIFPSLRILHMDV 175 (390)
Q Consensus 141 c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~ 175 (390)
|++|+.|+|..+.+..++...+.+|++|++|.|..
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence 45555555555443333333444555555555543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=91.38 E-value=0.08 Score=46.83 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=40.7
Q ss_pred ccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEE-EEccceeEEEeeeeeccCCC
Q 045124 163 VIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFD-VVSTSVRNLNSEFYLEDKHF 232 (390)
Q Consensus 163 ~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~-i~~~~L~~L~i~~~~~~~~~ 232 (390)
..+|+|++|+|++..+.+-..+..++..+|.|+.|+|+++...+... +. ....+|+.|.+ .++..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L----~~Npl 232 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWL----DGNSL 232 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEEC----TTSTT
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccCCcceEEc----cCCcC
Confidence 35778888888877776433555666778888888887776643322 11 11116778888 55554
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=78.29 E-value=0.3 Score=40.90 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=15.8
Q ss_pred CcccEEEeeeEEECCCch---HhHhhhcCCccceEEEec
Q 045124 166 PSLRILHMDVIQLGVSGH---HRDLYRCCPVLDDLYVRG 201 (390)
Q Consensus 166 ~~Lk~L~L~~v~~~~~~~---l~~ll~~cp~Le~L~l~~ 201 (390)
+.|++|+|++..+.+ .. +.+.+..-..|++|.|.+
T Consensus 98 ~tL~~L~L~~N~Ig~-~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 98 PSLRVLNVESNFLTP-ELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SSCCEEECCSSBCCH-HHHHHHHHHTTTTCCCSEEECCC
T ss_pred CccCeEecCCCcCCH-HHHHHHHHHHhhCCceeEEECCC
Confidence 445555555555543 22 222233334455555543
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=76.68 E-value=1.7 Score=33.49 Aligned_cols=38 Identities=24% Similarity=0.234 Sum_probs=28.6
Q ss_pred CcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEEC
Q 045124 142 TALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLG 179 (390)
Q Consensus 142 ~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~ 179 (390)
.+|++|+|+++.+..++...+..+++|++|+|.+..+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36888888888877777656677888888888876554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=73.51 E-value=0.26 Score=41.33 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=18.9
Q ss_pred CcccEEEeeeEEECCC--chHhHhhhcCCccceEEEeceec
Q 045124 166 PSLRILHMDVIQLGVS--GHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 166 ~~Lk~L~L~~v~~~~~--~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
..|++|+|+++.+.+. ..+...+..-..|++|+|..+..
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 3444555554444431 23444444555555555555543
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=64.79 E-value=4.6 Score=37.65 Aligned_cols=84 Identities=12% Similarity=0.149 Sum_probs=53.6
Q ss_pred CCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCC--c-hHhHhhhcCCccceEEEeceecCCCCee
Q 045124 134 LPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVS--G-HHRDLYRCCPVLDDLYVRGNIAEPLPFQ 210 (390)
Q Consensus 134 lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~--~-~l~~ll~~cp~Le~L~l~~c~~~~~~~~ 210 (390)
++...|...+|+.+.|.... ..++...+.+|++|+++.|.+...... . --...+.+|+.|+.+.|... +..
T Consensus 240 I~~~aF~~~~L~~i~lp~~i-~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~----i~~- 313 (401)
T 4fdw_A 240 IGQEAFRESGITTVKLPNGV-TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES----IRI- 313 (401)
T ss_dssp ECTTTTTTCCCSEEEEETTC-CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT----CCE-
T ss_pred ccccccccCCccEEEeCCCc-cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc----eEE-
Confidence 44445555789999996543 334434677899999999986543210 0 11345778999999998742 211
Q ss_pred EE----EEccceeEEEe
Q 045124 211 FD----VVSTSVRNLNS 223 (390)
Q Consensus 211 l~----i~~~~L~~L~i 223 (390)
+. -.+++|+.+.+
T Consensus 314 I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 314 LGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp ECTTTTTTCCSCCEEEE
T ss_pred EhhhhhcCCCCccEEEE
Confidence 10 13578999988
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=54.94 E-value=4.2 Score=37.29 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=47.2
Q ss_pred CccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeee--E-EECCCchHhHhhhcCCccceEEEeceecCCCCeeEE--
Q 045124 138 LCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDV--I-QLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFD-- 212 (390)
Q Consensus 138 l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~--v-~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~-- 212 (390)
+..|.+|+.+.+.... ...+...+..|++|+++.+.. + .+. ...+.+|+.|+.+.|-.. +.. +.
T Consensus 259 F~~~~~l~~i~l~~~i-~~i~~~aF~~c~~L~~i~l~~~~i~~I~-----~~aF~~c~~L~~i~lp~~----l~~-I~~~ 327 (379)
T 4h09_A 259 LQNCTALKTLNFYAKV-KTVPYLLCSGCSNLTKVVMDNSAIETLE-----PRVFMDCVKLSSVTLPTA----LKT-IQVY 327 (379)
T ss_dssp TTTCTTCCEEEECCCC-SEECTTTTTTCTTCCEEEECCTTCCEEC-----TTTTTTCTTCCEEECCTT----CCE-ECTT
T ss_pred cceeehhccccccccc-eeccccccccccccccccccccccceeh-----hhhhcCCCCCCEEEcCcc----ccE-EHHH
Confidence 3458899999886542 223333567889999998864 2 222 234678999999988532 111 10
Q ss_pred --EEccceeEEEe
Q 045124 213 --VVSTSVRNLNS 223 (390)
Q Consensus 213 --i~~~~L~~L~i 223 (390)
-.+++|+.+.+
T Consensus 328 aF~~C~~L~~i~i 340 (379)
T 4h09_A 328 AFKNCKALSTISY 340 (379)
T ss_dssp TTTTCTTCCCCCC
T ss_pred HhhCCCCCCEEEE
Confidence 13567887777
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=53.82 E-value=9.9 Score=35.04 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=48.6
Q ss_pred CccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeee-E-EECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEc
Q 045124 138 LCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDV-I-QLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVS 215 (390)
Q Consensus 138 l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~-v-~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~ 215 (390)
+..|.+|+.+.+.... ..++...+.+|++|+++.|.. + .+. ...+.+|..|+++.|-..- ..++..---.+
T Consensus 284 F~~c~~L~~i~l~~~i-~~I~~~aF~~c~~L~~i~lp~~v~~I~-----~~aF~~C~~L~~i~ip~sv-~~I~~~aF~~C 356 (394)
T 4gt6_A 284 FMNCPALQDIEFSSRI-TELPESVFAGCISLKSIDIPEGITQIL-----DDAFAGCEQLERIAIPSSV-TKIPESAFSNC 356 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCEEC-----TTTTTTCTTCCEEEECTTC-CBCCGGGGTTC
T ss_pred cccccccccccCCCcc-cccCceeecCCCCcCEEEeCCcccEeh-----HhHhhCCCCCCEEEECccc-CEEhHhHhhCC
Confidence 4568999999886432 233433667889999998852 2 222 2346789999999985431 11111000146
Q ss_pred cceeEEEe
Q 045124 216 TSVRNLNS 223 (390)
Q Consensus 216 ~~L~~L~i 223 (390)
++|+.+.+
T Consensus 357 ~~L~~i~~ 364 (394)
T 4gt6_A 357 TALNNIEY 364 (394)
T ss_dssp TTCCEEEE
T ss_pred CCCCEEEE
Confidence 88999888
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=46.38 E-value=6.9 Score=36.11 Aligned_cols=79 Identities=13% Similarity=0.203 Sum_probs=49.7
Q ss_pred CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeee-E-EECCCchHhHhhhcCCccceEEEeceec-CCCCeeEEE
Q 045124 137 NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDV-I-QLGVSGHHRDLYRCCPVLDDLYVRGNIA-EPLPFQFDV 213 (390)
Q Consensus 137 ~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~-v-~~~~~~~l~~ll~~cp~Le~L~l~~c~~-~~~~~~l~i 213 (390)
.+..|.+|+.+.+.... ..++...+.+|++|+++.|.. + .+. ...+.+|..|+.+.+-..-- .+-.. + -
T Consensus 292 ~F~~~~~L~~i~l~~~i-~~I~~~aF~~c~~L~~i~lp~~v~~I~-----~~aF~~c~~L~~i~lp~~l~~I~~~a-F-~ 363 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDSV-KFIGEEAFESCTSLVSIDLPYLVEEIG-----KRSFRGCTSLSNINFPLSLRKIGANA-F-Q 363 (394)
T ss_dssp TTTTCTTCCEEEECTTC-CEECTTTTTTCTTCCEECCCTTCCEEC-----TTTTTTCTTCCEECCCTTCCEECTTT-B-T
T ss_pred ccccccccccccccccc-ceechhhhcCCCCCCEEEeCCcccEEh-----HHhccCCCCCCEEEECccccEehHHH-h-h
Confidence 34568999999986542 223333567889999999853 2 121 23467899999998854310 00011 1 1
Q ss_pred EccceeEEEe
Q 045124 214 VSTSVRNLNS 223 (390)
Q Consensus 214 ~~~~L~~L~i 223 (390)
.+++|+.+.+
T Consensus 364 ~C~~L~~i~l 373 (394)
T 4fs7_A 364 GCINLKKVEL 373 (394)
T ss_dssp TCTTCCEEEE
T ss_pred CCCCCCEEEE
Confidence 4688999998
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=42.36 E-value=11 Score=34.83 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=41.6
Q ss_pred CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeee-E-EECCCchHhHhhhcCCccceEEEece
Q 045124 137 NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDV-I-QLGVSGHHRDLYRCCPVLDDLYVRGN 202 (390)
Q Consensus 137 ~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~-v-~~~~~~~l~~ll~~cp~Le~L~l~~c 202 (390)
.+..|.+|+.+.|... +..+....+.+|++|+++.|.. + .+. ...+.+|+.|+++.+-..
T Consensus 315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l~~I~-----~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLSLRKIG-----ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTTCCEEC-----TTTBTTCTTCCEEEEEGG
T ss_pred hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECccccEeh-----HHHhhCCCCCCEEEECCC
Confidence 3456899999999654 2233333677899999998853 2 222 235778999999999654
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=41.13 E-value=18 Score=33.25 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=46.5
Q ss_pred CccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeee-EEECCCchH-hHhhhcCCccceEEEeceecCCCCeeEEEEc
Q 045124 138 LCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDV-IQLGVSGHH-RDLYRCCPVLDDLYVRGNIAEPLPFQFDVVS 215 (390)
Q Consensus 138 l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~-v~~~~~~~l-~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~ 215 (390)
+..|.+|+.+.|.... ..+....+.+|.+|+++.|-. +. .+ ...+.+|++|+.+.+.+..... .. + ..+
T Consensus 307 F~~c~~L~~i~lp~~v-~~I~~~aF~~C~~L~~i~ip~sv~-----~I~~~aF~~C~~L~~i~~~~~~~~~-~~-~-~~~ 377 (394)
T 4gt6_A 307 FAGCISLKSIDIPEGI-TQILDDAFAGCEQLERIAIPSSVT-----KIPESAFSNCTALNNIEYSGSRSQW-NA-I-STD 377 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEEECTTCC-----BCCGGGGTTCTTCCEEEESSCHHHH-HT-C-BCC
T ss_pred ecCCCCcCEEEeCCcc-cEehHhHhhCCCCCCEEEECcccC-----EEhHhHhhCCCCCCEEEECCceeeh-hh-h-hcc
Confidence 3459999999996542 223333677899999999852 21 22 3457889999999998753210 01 1 245
Q ss_pred cceeEEEe
Q 045124 216 TSVRNLNS 223 (390)
Q Consensus 216 ~~L~~L~i 223 (390)
.+|+.+.+
T Consensus 378 ~~L~~i~i 385 (394)
T 4gt6_A 378 SGLQNLPV 385 (394)
T ss_dssp CCC-----
T ss_pred CCCCEEEe
Confidence 67888877
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=35.32 E-value=18 Score=27.53 Aligned_cols=37 Identities=16% Similarity=0.027 Sum_probs=27.5
Q ss_pred CcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceec
Q 045124 166 PSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 166 ~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
++|++|+|++..+.. -=..++...+.|+.|.|.++.+
T Consensus 31 ~~l~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTA--LPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSS--CCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCc--cChhhhhhccccCEEEecCCCe
Confidence 379999999888764 1134567788899999888764
No 170
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=31.88 E-value=32 Score=20.82 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=14.2
Q ss_pred CCCcCCCCChHHHHHHHcc
Q 045124 5 RRNFFYGLPDDILRHIIAC 23 (390)
Q Consensus 5 ~~D~is~LPd~iL~~Ils~ 23 (390)
..+-|+.||.||-..|+|-
T Consensus 17 D~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILSG 35 (48)
T ss_dssp CGGGTTTSCHHHHHHHTTC
T ss_pred CHHHHHHCcHHHHHHHHhc
Confidence 3456888888888888774
No 171
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=30.43 E-value=24 Score=31.98 Aligned_cols=83 Identities=12% Similarity=0.082 Sum_probs=51.0
Q ss_pred CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEcc
Q 045124 137 NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVST 216 (390)
Q Consensus 137 ~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~ 216 (390)
.++.|..|+.+.+-... ..+....+..+.+|+++.+..- +. .--...+.+|+.|+.+.+..+....++...--.++
T Consensus 235 ~f~~~~~L~~i~lp~~v-~~I~~~aF~~~~~l~~i~l~~~-i~--~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 235 AFYGMKALDEIAIPKNV-TSIGSFLLQNCTALKTLNFYAK-VK--TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTCSSCCEEEECTTC-CEECTTTTTTCTTCCEEEECCC-CS--EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccCCccceEEEcCCCc-cEeCccccceeehhcccccccc-ce--eccccccccccccccccccccccceehhhhhcCCC
Confidence 34568999999986552 2233235678899999988531 11 11123567899999999976532111000001468
Q ss_pred ceeEEEe
Q 045124 217 SVRNLNS 223 (390)
Q Consensus 217 ~L~~L~i 223 (390)
+|+++.+
T Consensus 311 ~L~~i~l 317 (379)
T 4h09_A 311 KLSSVTL 317 (379)
T ss_dssp TCCEEEC
T ss_pred CCCEEEc
Confidence 8999998
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.87 E-value=73 Score=22.80 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=6.1
Q ss_pred hhcCCccceEEEe
Q 045124 188 YRCCPVLDDLYVR 200 (390)
Q Consensus 188 l~~cp~Le~L~l~ 200 (390)
+.+|..|+++.+.
T Consensus 39 F~~C~~L~~i~~~ 51 (100)
T 2lz0_A 39 FSGCTALEKLILT 51 (100)
T ss_dssp STTCTTCCCEEEC
T ss_pred HhccCCccEEEEc
Confidence 3345555555443
Done!