Query 045125
Match_columns 342
No_of_seqs 273 out of 1781
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 17:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 100.0 1.2E-45 4E-50 349.5 25.1 228 66-304 37-268 (306)
2 2f2c_A Cyclin homolog, V-cycli 100.0 3E-45 1E-49 338.2 25.0 229 61-303 16-248 (254)
3 2cch_B Cyclin A2, cyclin-A; co 100.0 1E-45 3.5E-50 342.4 21.1 226 62-304 2-229 (260)
4 1g3n_C V-cyclin; cyclin-depend 100.0 2.3E-45 7.8E-50 339.6 22.7 224 68-304 20-249 (257)
5 1f5q_B Gamma herpesvirus cycli 100.0 2.2E-45 7.4E-50 338.4 16.8 219 67-304 21-243 (252)
6 2w96_A G1/S-specific cyclin-D1 100.0 1.8E-44 6.1E-49 336.1 22.5 227 67-304 24-258 (271)
7 2b9r_A Human cyclin B1; cell c 100.0 4.7E-45 1.6E-49 339.7 16.5 224 62-303 2-225 (269)
8 1w98_B Cyclin E, G1/S-specific 100.0 6.2E-43 2.1E-47 327.5 26.3 227 60-302 11-241 (283)
9 2i53_A Cyclin K; cell cycle, t 100.0 5E-34 1.7E-38 263.4 13.7 201 95-304 35-252 (258)
10 2ivx_A Cyclin-T2; transcriptio 100.0 7E-33 2.4E-37 255.7 19.0 193 96-304 26-241 (257)
11 3rgf_B Cyclin-C; protein kinas 100.0 4E-32 1.4E-36 254.4 20.7 189 98-303 40-242 (285)
12 1zp2_A RNA polymerase II holoe 100.0 5.2E-32 1.8E-36 246.8 19.8 187 101-304 28-221 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 5.5E-32 1.9E-36 260.8 11.6 193 96-304 33-248 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 1.3E-29 4.6E-34 241.1 19.2 201 98-304 54-262 (323)
15 1c9b_A General transcription f 99.9 6.4E-25 2.2E-29 196.1 20.7 187 99-303 3-189 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 4.4E-21 1.5E-25 170.2 19.9 187 99-303 7-195 (200)
17 3k7a_M Transcription initiatio 99.7 2.4E-17 8.2E-22 158.0 4.8 183 101-301 126-320 (345)
18 4bbr_M Transcription initiatio 99.2 1.4E-11 4.9E-16 117.7 7.7 182 102-301 127-320 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.2 4E-06 1.4E-10 77.4 9.7 110 104-218 77-187 (293)
20 1ais_B TFB TFIIB, protein (tra 95.4 0.12 4.3E-06 44.4 10.8 89 204-303 11-99 (200)
21 1c9b_A General transcription f 94.4 0.27 9.3E-06 42.5 10.3 88 205-303 8-95 (207)
22 4bbr_M Transcription initiatio 91.9 0.92 3.2E-05 42.7 10.4 86 205-302 129-215 (345)
23 3k7a_M Transcription initiatio 90.2 0.41 1.4E-05 45.0 6.1 87 205-302 129-215 (345)
24 2ivx_A Cyclin-T2; transcriptio 85.6 6 0.0002 35.0 10.6 86 106-196 148-238 (257)
25 2i53_A Cyclin K; cell cycle, t 85.2 4.1 0.00014 36.1 9.3 89 106-197 153-250 (258)
26 3rgf_B Cyclin-C; protein kinas 85.2 1.8 6E-05 39.4 6.9 83 106-197 159-241 (285)
27 1zp2_A RNA polymerase II holoe 81.6 11 0.00037 32.9 10.4 88 206-303 32-127 (235)
28 2pk2_A Cyclin-T1, protein TAT; 80.3 4.5 0.00016 38.0 7.9 86 106-196 155-245 (358)
29 2b9r_A Human cyclin B1; cell c 68.1 41 0.0014 29.8 10.7 55 247-302 74-130 (269)
30 2f2c_A Cyclin homolog, V-cycli 67.7 12 0.00042 32.9 7.1 84 107-196 155-246 (254)
31 1g3n_C V-cyclin; cyclin-depend 64.8 15 0.00051 32.5 7.0 84 106-195 153-245 (257)
32 2cch_B Cyclin A2, cyclin-A; co 59.5 39 0.0013 29.7 8.8 52 251-303 79-132 (260)
33 2w96_A G1/S-specific cyclin-D1 58.6 57 0.002 28.8 9.8 55 249-303 95-150 (271)
34 3g33_B CCND3 protein; Ser/Thr 55.0 23 0.00079 32.3 6.6 68 125-198 196-267 (306)
35 1jkw_A Cyclin H; cell cycle, c 52.2 97 0.0033 28.2 10.4 71 229-301 77-154 (323)
36 1w98_B Cyclin E, G1/S-specific 42.0 1.2E+02 0.0041 26.9 9.2 54 249-303 89-144 (283)
37 3h4c_A Transcription factor TF 34.7 2.2E+02 0.0076 24.5 13.7 109 103-219 14-130 (260)
38 2pmi_B PHO85 cyclin PHO80, ami 29.6 3.1E+02 0.01 24.8 9.6 45 249-294 115-159 (293)
39 3m03_A ORC6, origin recognitio 28.6 1.8E+02 0.0063 21.7 8.0 78 108-194 6-89 (95)
40 1fs1_B SKP1, cyclin A/CDK2-ass 24.8 1.9E+02 0.0064 22.8 6.6 20 146-165 107-126 (141)
41 3m03_A ORC6, origin recognitio 24.0 1.3E+02 0.0046 22.4 5.1 48 252-302 45-92 (95)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-45 Score=349.49 Aligned_cols=228 Identities=20% Similarity=0.306 Sum_probs=198.2
Q ss_pred ChHHHHHHHHHHHcccCCCCchhhhccCCCCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccCCchhh
Q 045125 66 QSDECLALLLEKECHHLPHNDYLKRLRTGDLDLAARQEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPKGKVWM 145 (342)
Q Consensus 66 y~~ei~~~l~~~E~~~~~~~~yl~~~q~~~i~~~~R~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~~~~~~ 145 (342)
|+++|+++|+++|.++.|.++|++.. ++++++.+|..+|+||++|+.+|+++++|+++||+|||||+++..+.+.+
T Consensus 37 ~~~~i~~~l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~--- 112 (306)
T 3g33_B 37 GDQRVLQSLLRLEERYVPRASYFQCV-QREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQ--- 112 (306)
T ss_dssp CHHHHHHHHHHHGGGGSCSSCCTTTS-TTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGG---
T ss_pred chHHHHHHHHHHHHHhCCCcHHHhhc-CccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHH---
Confidence 89999999999999999999999865 45799999999999999999999999999999999999999999887766
Q ss_pred HHHHHHHHHHHHhhhccccCCcccceeeccCCccccHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCCCCCCCC
Q 045125 146 MQLLAVACLSLAAKMEETEVPLCLDLQVGQSKFLFEAKTIQRMELLVLSTLKWRMQAITPFSFLDYFTRKITDDDDDHHQ 225 (342)
Q Consensus 146 lqLlavaCL~IAsK~eE~~~p~~~dl~v~~~~~~~~~~~I~~mE~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~~~~~~~~ 225 (342)
+||+|+||||||+|+||..+|.+.+|. ....+.|++++|++||+.||++|+|+++.|||++||.+|+..++.. .
T Consensus 113 lqLv~~tcL~lAsK~eE~~p~~~~~l~-~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~-----~ 186 (306)
T 3g33_B 113 LQLLGAVCMLLASKLRETTPLTIEKLC-IYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLP-----R 186 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCTTHHH-HHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCC-----T
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHH-HHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCC-----h
Confidence 999999999999999999999999994 4444557999999999999999999999999999999999988765 2
Q ss_pred CcHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHccCCCCcch----HHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 045125 226 TPLRALFCRSIQIITSSIKGIDFLEFKPSEIAAAVAISVTGETKTVVDT----EKAISLLTQHVKKERVLKCIKMMNDSL 301 (342)
Q Consensus 226 ~~~~~l~~~~~~lil~~l~d~~~l~~~PS~IAaAai~~a~~~~~~~~~w----~~~l~~~~~~~~~~~l~~C~~~l~~l~ 301 (342)
.....+...+.+++..++.++.|+.|+||.|||||+++|+...+..+.| .+.|..+ +||++++|.+|++.|.+++
T Consensus 187 ~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~-tg~~~~~l~~c~~~I~~l~ 265 (306)
T 3g33_B 187 DRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGI-TGTEVDCLRACQEQIEAAL 265 (306)
T ss_dssp TTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHH-HCCCHHHHHHHHHHHHHHH
Confidence 2212344455556655667999999999999999999999877754444 5667777 8999999999999999999
Q ss_pred hcC
Q 045125 302 ISG 304 (342)
Q Consensus 302 ~~~ 304 (342)
..+
T Consensus 266 ~~~ 268 (306)
T 3g33_B 266 RES 268 (306)
T ss_dssp HTC
T ss_pred HHH
Confidence 875
No 2
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=3e-45 Score=338.22 Aligned_cols=229 Identities=16% Similarity=0.194 Sum_probs=196.4
Q ss_pred cCCCCChHHHHHHHHHHHcccCCCCchhhhccCCCCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccC
Q 045125 61 LSLPLQSDECLALLLEKECHHLPHNDYLKRLRTGDLDLAARQEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPK 140 (342)
Q Consensus 61 ~~~~~y~~ei~~~l~~~E~~~~~~~~yl~~~q~~~i~~~~R~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~ 140 (342)
..+.+ +||++ |+++|.++.|+++|++.. ++++++++|..+|+||++|+.+|+++++|+|+||+|+|||+++..+++
T Consensus 16 ~l~~~--~~i~~-l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~ 91 (254)
T 2f2c_A 16 TTMKD--PRVLN-NLKLRELLLPKFTSLWEI-QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTK 91 (254)
T ss_dssp HHHTC--HHHHH-HHHHHHTTSCCCSSTTTT-CSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCT
T ss_pred ccccH--HHHHH-HHHHHHhhCCCchhhhhc-CccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCH
Confidence 34444 99999 999999999999999743 568999999999999999999999999999999999999999999988
Q ss_pred CchhhHHHHHHHHHHHHhhhccccCCcccceeeccCCccccHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCCC
Q 045125 141 GKVWMMQLLAVACLSLAAKMEETEVPLCLDLQVGQSKFLFEAKTIQRMELLVLSTLKWRMQAITPFSFLDYFTRKITDDD 220 (342)
Q Consensus 141 ~~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~v~~~~~~~~~~~I~~mE~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~~~ 220 (342)
.+ +||+|+||||||+|+||..+|.+.+| +....+.|++++|.+||+.||++|+|+++.|||++|+.+|++.++.+
T Consensus 92 ~~---lqLv~~acl~iA~K~eE~~~p~~~d~-~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~- 166 (254)
T 2f2c_A 92 KT---LQKIGAACVLIGSKIRTVKPMTVSKL-TYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIP- 166 (254)
T ss_dssp TT---HHHHHHHHHHHHHHHHCSSCCCHHHH-STTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCC-
T ss_pred HH---ccHHHHHHHHHHHHhcccCCCCHHHH-HHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCC-
Confidence 87 99999999999999999999999999 44444567999999999999999999999999999999999998765
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHccCCCCc-ch---HHHHHHHhcCCCHHHHHHHHHH
Q 045125 221 DDHHQTPLRALFCRSIQIITSSIKGIDFLEFKPSEIAAAVAISVTGETKTVV-DT---EKAISLLTQHVKKERVLKCIKM 296 (342)
Q Consensus 221 ~~~~~~~~~~l~~~~~~lil~~l~d~~~l~~~PS~IAaAai~~a~~~~~~~~-~w---~~~l~~~~~~~~~~~l~~C~~~ 296 (342)
......+...+.+++..++.++.|+.|+||.|||||+++|+...+..+ .| .+.+..+ +||++++|.+|++.
T Consensus 167 ----~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~-tg~~~~~l~~c~~~ 241 (254)
T 2f2c_A 167 ----EDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSI-LNFSTNTVRTVKDQ 241 (254)
T ss_dssp ----GGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHH-HTCCHHHHHHHHHH
T ss_pred ----hhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH-HCcCHHHHHHHHHH
Confidence 222122344555666556779999999999999999999997753322 25 7778887 99999999999999
Q ss_pred HHHHHhc
Q 045125 297 MNDSLIS 303 (342)
Q Consensus 297 l~~l~~~ 303 (342)
|.+++..
T Consensus 242 i~~~~~~ 248 (254)
T 2f2c_A 242 VSEAFSL 248 (254)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999865
No 3
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=1e-45 Score=342.42 Aligned_cols=226 Identities=24% Similarity=0.339 Sum_probs=201.1
Q ss_pred CCCCChHHHHHHHHHHHcccCCCCchhhhccCCCCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccCC
Q 045125 62 SLPLQSDECLALLLEKECHHLPHNDYLKRLRTGDLDLAARQEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPKG 141 (342)
Q Consensus 62 ~~~~y~~ei~~~l~~~E~~~~~~~~yl~~~q~~~i~~~~R~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~~ 141 (342)
.+++|.+||+.+|+++|.++.|.++|+++ ++++++++|..+++||++++.+|+++++|+++||+|+|||++..++++.
T Consensus 2 ~~~eY~~di~~~l~~~E~~~~p~~~y~~~--q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~ 79 (260)
T 2cch_B 2 EVPDYHEDIHTYLREMEVKCKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRG 79 (260)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCCCTTGGGG--CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_pred chHhHHHHHHHHHHHHHhhcCCCchhhhc--CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHH
Confidence 36899999999999999999999999986 6789999999999999999999999999999999999999999999877
Q ss_pred chhhHHHHHHHHHHHHhhhccccCCccccee-eccCCccccHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCCC
Q 045125 142 KVWMMQLLAVACLSLAAKMEETEVPLCLDLQ-VGQSKFLFEAKTIQRMELLVLSTLKWRMQAITPFSFLDYFTRKITDDD 220 (342)
Q Consensus 142 ~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~-v~~~~~~~~~~~I~~mE~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~~~ 220 (342)
+ +||+|+||||||+|+||..+|.+.++. +++ ..|++++|.+||+.||++|+|+++.|||++|+.+|+..++.+
T Consensus 80 ~---lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~--~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~- 153 (260)
T 2cch_B 80 K---LQLVGTAAMLLASKFEEIYPPEVAEFVYITD--DTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA- 153 (260)
T ss_dssp H---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT--SSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSC-
T ss_pred H---HhHHHHHHHHHHHHhcccCCCCHHHHHHHHc--CCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCC-
Confidence 6 999999999999999999999999995 554 456999999999999999999999999999999999988754
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCcc-ccccCHHHHHHHHHHHHHccCCCCcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 045125 221 DDHHQTPLRALFCRSIQIITSSIKGID-FLEFKPSEIAAAVAISVTGETKTVVDTEKAISLLTQHVKKERVLKCIKMMND 299 (342)
Q Consensus 221 ~~~~~~~~~~l~~~~~~lil~~l~d~~-~l~~~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~~~~~~~~l~~C~~~l~~ 299 (342)
. ..+...+.+++..++.++. |+.|+||.|||||+++|+...+. +.|.+.+..+ +|+++++|.+|++.|.+
T Consensus 154 ----~---~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~-~g~~~~~i~~~~~~l~~ 224 (260)
T 2cch_B 154 ----N---CKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRK-TGYTLESLKPCLMDLHQ 224 (260)
T ss_dssp ----C---HHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHH-HCCCHHHHHHHHHHHHH
T ss_pred ----h---HHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHH-hCcCHHHHHHHHHHHHH
Confidence 2 1233444444444455888 99999999999999999987666 7899999888 99999999999999999
Q ss_pred HHhcC
Q 045125 300 SLISG 304 (342)
Q Consensus 300 l~~~~ 304 (342)
++...
T Consensus 225 ~~~~~ 229 (260)
T 2cch_B 225 TYLKA 229 (260)
T ss_dssp HHHHG
T ss_pred HHHhc
Confidence 88654
No 4
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.3e-45 Score=339.57 Aligned_cols=224 Identities=17% Similarity=0.178 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHcccCCCCchhhhccCCCCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccCCchhhHH
Q 045125 68 DECLALLLEKECHHLPHNDYLKRLRTGDLDLAARQEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPKGKVWMMQ 147 (342)
Q Consensus 68 ~ei~~~l~~~E~~~~~~~~yl~~~q~~~i~~~~R~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~~~~~~lq 147 (342)
+||+ +|+++|.++.|.++|++.. ++++++++|..+|+||++|+.+|+++++|+|+||+|+|||+++..+++.+ +|
T Consensus 20 ~~i~-~l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~---lq 94 (257)
T 1g3n_C 20 RIFY-NILEIEPRFLTSDSVFGTF-QQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEH---FQ 94 (257)
T ss_dssp HHHH-HHHHHGGGGCCCGGGHHHH-TSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHH---HH
T ss_pred HHHH-HHHHHHHHhCCChhHHHhc-CccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHH---HH
Confidence 8999 9999999999999998654 56899999999999999999999999999999999999999999888766 99
Q ss_pred HHHHHHHHHHhhhccccCCccccee-eccCCccccHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCCCCCCCCC
Q 045125 148 LLAVACLSLAAKMEETEVPLCLDLQ-VGQSKFLFEAKTIQRMELLVLSTLKWRMQAITPFSFLDYFTRKITDDDDDHHQT 226 (342)
Q Consensus 148 LlavaCL~IAsK~eE~~~p~~~dl~-v~~~~~~~~~~~I~~mE~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~~~~~~~~~ 226 (342)
|+|+||||||+|+||..+|.+.++. +++ ..|++++|.+||+.||++|+|+++.|||++||.+|+..++... .
T Consensus 95 Lv~~acl~iA~K~eE~~~p~~~d~~~~~~--~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~-----~ 167 (257)
T 1g3n_C 95 KTGSACLLVASKLRSLTPISTSSLCYAAA--DSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGS-----Q 167 (257)
T ss_dssp HHHHHHHHHHHHHHCSSCCCHHHHHHHTT--TCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSS-----T
T ss_pred HHHHHHHHHHHHHccccCCCHHHHHHHHC--CCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCCh-----h
Confidence 9999999999999999999999995 444 4569999999999999999999999999999999999987652 2
Q ss_pred cHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHccCCCC-----cchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 045125 227 PLRALFCRSIQIITSSIKGIDFLEFKPSEIAAAVAISVTGETKTV-----VDTEKAISLLTQHVKKERVLKCIKMMNDSL 301 (342)
Q Consensus 227 ~~~~l~~~~~~lil~~l~d~~~l~~~PS~IAaAai~~a~~~~~~~-----~~w~~~l~~~~~~~~~~~l~~C~~~l~~l~ 301 (342)
....+...+.+++..++.++.|+.|+||.|||||+++|+...+.. +.|.+.+..+ +|+++++|.+|++.|.+++
T Consensus 168 ~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~-t~~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 168 HLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASI-LGCDVSVLQAAVEQILTSV 246 (257)
T ss_dssp THHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHH-HTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHH-HCcCHHHHHHHHHHHHHHH
Confidence 212334445566655566999999999999999999999776532 4699999988 9999999999999999998
Q ss_pred hcC
Q 045125 302 ISG 304 (342)
Q Consensus 302 ~~~ 304 (342)
..-
T Consensus 247 ~~~ 249 (257)
T 1g3n_C 247 SDF 249 (257)
T ss_dssp HHC
T ss_pred HHC
Confidence 764
No 5
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.2e-45 Score=338.37 Aligned_cols=219 Identities=13% Similarity=0.115 Sum_probs=184.7
Q ss_pred hHHHHHHHHHHHcccCCCCchhhhccCCCCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccCCchhhH
Q 045125 67 SDECLALLLEKECHHLPHNDYLKRLRTGDLDLAARQEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPKGKVWMM 146 (342)
Q Consensus 67 ~~ei~~~l~~~E~~~~~~~~yl~~~q~~~i~~~~R~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~~~~~~l 146 (342)
+++++++|+++|.++.| . .. ++++++++|.++||||++|+.+|+++++|+|+||+|+||||++..+++.+ +
T Consensus 21 ~d~i~~~l~~~E~~~~p--~---~~-q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~---l 91 (252)
T 1f5q_B 21 RQMIYRSEREHDARMVG--V---NV-DQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDREN---Y 91 (252)
T ss_dssp HHHHHHHHHHHHHHHSS--S---SH-HHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGG---H
T ss_pred HHHHHHHHHHHHHHhCc--C---cc-CCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHH---H
Confidence 67999999999999987 1 11 44688899999999999999999999999999999999999999998777 9
Q ss_pred HHHHHHHHHHHhhhccccCCcccceeeccCCccccHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCCCCCCCCC
Q 045125 147 QLLAVACLSLAAKMEETEVPLCLDLQVGQSKFLFEAKTIQRMELLVLSTLKWRMQAITPFSFLDYFTRKITDDDDDHHQT 226 (342)
Q Consensus 147 qLlavaCL~IAsK~eE~~~p~~~dl~v~~~~~~~~~~~I~~mE~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~~~~~~~~~ 226 (342)
||+|+|||+||+|+||..+|.+.++. ....+.|++++|++||+.||++|+|+++.|||++|+++|++.++.. ..
T Consensus 92 qLvg~tcl~iAsK~eE~~p~~~~~l~-~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~-----~~ 165 (252)
T 1f5q_B 92 QSTAAVALHIAGKVRAYMPIKATQLA-YLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAP-----RE 165 (252)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHH-HHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCC-----HH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHH-HHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCC-----cc
Confidence 99999999999999999999999995 4344567999999999999999999999999999999999987654 21
Q ss_pred cHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHccCCCCcch----HHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 045125 227 PLRALFCRSIQIITSSIKGIDFLEFKPSEIAAAVAISVTGETKTVVDT----EKAISLLTQHVKKERVLKCIKMMNDSLI 302 (342)
Q Consensus 227 ~~~~l~~~~~~lil~~l~d~~~l~~~PS~IAaAai~~a~~~~~~~~~w----~~~l~~~~~~~~~~~l~~C~~~l~~l~~ 302 (342)
....+...+.+++..++.|+.|+.|+||.|||||+.++.+.. ..| ...+..+ +||++++|.+|++.|.+++.
T Consensus 166 ~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~---~~~~~~~~~~L~~~-t~~~~~~l~~C~~~i~~~l~ 241 (252)
T 1f5q_B 166 DYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQK---YDYYENRIDGVCKS-LYITKEELHQCCDLVDIAIV 241 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhccC---CCchhhHHHHHHHH-HCcCHHHHHHHHHHHHHHHH
Confidence 112344455556555666999999999999999977766322 233 5557777 99999999999999999885
Q ss_pred cC
Q 045125 303 SG 304 (342)
Q Consensus 303 ~~ 304 (342)
.-
T Consensus 242 ~~ 243 (252)
T 1f5q_B 242 SF 243 (252)
T ss_dssp HC
T ss_pred Hh
Confidence 53
No 6
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=1.8e-44 Score=336.06 Aligned_cols=227 Identities=23% Similarity=0.355 Sum_probs=194.8
Q ss_pred hHHHHHHHHHHHcccCCCCchhhhccCCCCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccCCchhhH
Q 045125 67 SDECLALLLEKECHHLPHNDYLKRLRTGDLDLAARQEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPKGKVWMM 146 (342)
Q Consensus 67 ~~ei~~~l~~~E~~~~~~~~yl~~~q~~~i~~~~R~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~~~~~~l 146 (342)
++|++++|+++|.++.|.++|+... ++++++++|..+++||++++.+|+++++|+++||+|+|||+++.++++.+ +
T Consensus 24 ~~~i~~~l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~---l 99 (271)
T 2w96_A 24 NDRVLRAMLKAEETCAPSVSYFKCV-QKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSR---L 99 (271)
T ss_dssp -CHHHHHHHHHHHHTCCCTTHHHHT-CSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTT---H
T ss_pred HHHHHHHHHHHHHHhCCCchHHHhc-CCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHH---H
Confidence 7799999999999999999999765 46899999999999999999999999999999999999999999998887 9
Q ss_pred HHHHHHHHHHHhhhccccCCcccceeeccCCccccHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCCCCCCCCC
Q 045125 147 QLLAVACLSLAAKMEETEVPLCLDLQVGQSKFLFEAKTIQRMELLVLSTLKWRMQAITPFSFLDYFTRKITDDDDDHHQT 226 (342)
Q Consensus 147 qLlavaCL~IAsK~eE~~~p~~~dl~v~~~~~~~~~~~I~~mE~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~~~~~~~~~ 226 (342)
||+|+||||||+|+||..||.+.++. ....+.|++++|.+||+.||++|+|+++.|||++||.+|+..++.. ..
T Consensus 100 qlv~~acL~iAsK~EE~~p~~~~~~~-~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~-----~~ 173 (271)
T 2w96_A 100 QLLGATCMFVASKMKETIPLTAEKLC-IYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEA-----EE 173 (271)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHH-HHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCC-----HH
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHH-HHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCC-----ch
Confidence 99999999999999999999999994 4444567999999999999999999999999999999999988765 21
Q ss_pred cHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHccCC----CCcc----hHHHHHHHhcCCCHHHHHHHHHHHH
Q 045125 227 PLRALFCRSIQIITSSIKGIDFLEFKPSEIAAAVAISVTGETK----TVVD----TEKAISLLTQHVKKERVLKCIKMMN 298 (342)
Q Consensus 227 ~~~~l~~~~~~lil~~l~d~~~l~~~PS~IAaAai~~a~~~~~----~~~~----w~~~l~~~~~~~~~~~l~~C~~~l~ 298 (342)
....+...+.+++..++.|+.|+.|+||.|||||+++|+...+ ..+. |.+.+..+ +|+++++|.+|++.|.
T Consensus 174 ~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~-~~v~~~~l~~c~~~i~ 252 (271)
T 2w96_A 174 NKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRV-IKCDPDCLRACQEQIE 252 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHH-HTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHH-HCcCHHHHHHHHHHHH
Confidence 1112234455565555669999999999999999999986542 1123 45667777 8999999999999999
Q ss_pred HHHhcC
Q 045125 299 DSLISG 304 (342)
Q Consensus 299 ~l~~~~ 304 (342)
+++..+
T Consensus 253 ~l~~~~ 258 (271)
T 2w96_A 253 ALLESS 258 (271)
T ss_dssp HHHTTT
T ss_pred HHHHHH
Confidence 999875
No 7
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=4.7e-45 Score=339.66 Aligned_cols=224 Identities=20% Similarity=0.283 Sum_probs=197.7
Q ss_pred CCCCChHHHHHHHHHHHcccCCCCchhhhccCCCCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccCC
Q 045125 62 SLPLQSDECLALLLEKECHHLPHNDYLKRLRTGDLDLAARQEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPKG 141 (342)
Q Consensus 62 ~~~~y~~ei~~~l~~~E~~~~~~~~yl~~~q~~~i~~~~R~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~~ 141 (342)
.+.+|.+|||++|+++|.++.|+++|++. + ++++++|..+++||.+++.+|+++++|+++||+|+|||++...+++.
T Consensus 2 ~~~eY~~di~~~l~~~E~~~~~~~~y~~~--q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~ 78 (269)
T 2b9r_A 2 LSSEYVKDIYAYLRQLEAAQAVRPKYLLG--R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKK 78 (269)
T ss_dssp -----CCTTTTTHHHHHHTTCCCTTTTSS--S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGG
T ss_pred ChHHHHHHHHHHHHHHHHhhCCCcccccC--C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHH
Confidence 46899999999999999999999999985 4 89999999999999999999999999999999999999999999887
Q ss_pred chhhHHHHHHHHHHHHhhhccccCCcccceeeccCCccccHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCCCC
Q 045125 142 KVWMMQLLAVACLSLAAKMEETEVPLCLDLQVGQSKFLFEAKTIQRMELLVLSTLKWRMQAITPFSFLDYFTRKITDDDD 221 (342)
Q Consensus 142 ~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~v~~~~~~~~~~~I~~mE~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~~~~ 221 (342)
+ +||+|+||||||+|+||..+|.+.++. ......|++++|.+||+.||++|+|+++.|||++|+.+|+...+.+
T Consensus 79 ~---lqlv~~acL~iA~K~eE~~~p~~~d~~-~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~-- 152 (269)
T 2b9r_A 79 M---LQLVGVTAMFIASKYEEMYPPEIGDFA-FVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVD-- 152 (269)
T ss_dssp G---HHHHHHHHHHHHHHHHCSSCCCHHHHH-HHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCC--
T ss_pred H---hhHHHHHHHHHHHhcccccCccHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCC--
Confidence 7 999999999999999999999999995 3334456999999999999999999999999999999999876543
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHccCCCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 045125 222 DHHQTPLRALFCRSIQIITSSIKGIDFLEFKPSEIAAAVAISVTGETKTVVDTEKAISLLTQHVKKERVLKCIKMMNDSL 301 (342)
Q Consensus 222 ~~~~~~~~~l~~~~~~lil~~l~d~~~l~~~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~~~~~~~~l~~C~~~l~~l~ 301 (342)
..+...+.+++..++.++.|+.|+||.|||||+++|+...+. ..|.+.+..+ +||++++|.+|++.|.+++
T Consensus 153 -------~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~-~~w~~~l~~~-tg~~~~~l~~~~~~l~~~~ 223 (269)
T 2b9r_A 153 -------VEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDN-GEWTPTLQHY-LSYTEESLLPVMQHLAKNV 223 (269)
T ss_dssp -------HHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTC-CCSCTTHHHH-SCCCSSTTTTHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCC-CCCCHHHHHH-HCCCHHHHHHHHHHHHHHH
Confidence 344555666666677799999999999999999999987766 5799999988 9999999999999999987
Q ss_pred hc
Q 045125 302 IS 303 (342)
Q Consensus 302 ~~ 303 (342)
..
T Consensus 224 ~~ 225 (269)
T 2b9r_A 224 VM 225 (269)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=6.2e-43 Score=327.55 Aligned_cols=227 Identities=22% Similarity=0.348 Sum_probs=193.1
Q ss_pred ccCCCCChHHHHHHHHHHHcccCCCCchhhhccCCCCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhcc-Ccc
Q 045125 60 LLSLPLQSDECLALLLEKECHHLPHNDYLKRLRTGDLDLAARQEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSA-YEL 138 (342)
Q Consensus 60 ~~~~~~y~~ei~~~l~~~E~~~~~~~~yl~~~q~~~i~~~~R~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~-~~~ 138 (342)
+..+.+|++||+++|+++|.++.|.++|+++ ++++++++|..+++||++++.+|++.++|+++||+|+|||++. ..+
T Consensus 11 p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~--q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v 88 (283)
T 1w98_B 11 PVLSWANREEVWKIMLNKEKTYLRDQHFLEQ--HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENV 88 (283)
T ss_dssp CCCSSSCHHHHHHHHHHHTTTSCCCTTGGGG--CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCC
T ss_pred cchhhcCHHHHHHHHHHHHHHhCCCchhhcc--CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCC
Confidence 3456899999999999999999999999986 7789999999999999999999999999999999999999998 567
Q ss_pred cCCchhhHHHHHHHHHHHHhhhccccCCcccceeeccCCccccHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCC
Q 045125 139 PKGKVWMMQLLAVACLSLAAKMEETEVPLCLDLQVGQSKFLFEAKTIQRMELLVLSTLKWRMQAITPFSFLDYFTRKITD 218 (342)
Q Consensus 139 ~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~v~~~~~~~~~~~I~~mE~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~ 218 (342)
++.+ +||+|+|||+||+|+||..+|.+.++. ......|++++|.+||+.||++|+|++++|||++||.+|+..++.
T Consensus 89 ~~~~---lqlv~~acL~iA~K~eE~~~p~l~~~~-~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~ 164 (283)
T 1w98_B 89 VKTL---LQLIGISSLFIAAKLEEIYPPKLHQFA-YVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYL 164 (283)
T ss_dssp CGGG---HHHHHHHHHHHHHHHHCSSCCCHHHHH-HTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred CHHH---HHHHHHHHHHHHHHhcccCCCcHHHHH-HHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhcc
Confidence 6555 999999999999999999999999995 333445699999999999999999999999999999999998765
Q ss_pred CCCCC---CCCcHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHccCCCCcchHHHHHHHhcCCCHHHHHHHHH
Q 045125 219 DDDDH---HQTPLRALFCRSIQIITSSIKGIDFLEFKPSEIAAAVAISVTGETKTVVDTEKAISLLTQHVKKERVLKCIK 295 (342)
Q Consensus 219 ~~~~~---~~~~~~~l~~~~~~lil~~l~d~~~l~~~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~~~~~~~~l~~C~~ 295 (342)
.+... .+.. ......+.+++..++.++.|+.|+||.|||||+++|+ |.+.+..+ +||++++|.+|++
T Consensus 165 ~~~~~~~~~~~~-~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~--------~~~~l~~~-tg~~~~~i~~c~~ 234 (283)
T 1w98_B 165 NDLHEVLLPQYP-QQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS--------SSELMQKV-SGYQWCDIENCVK 234 (283)
T ss_dssp CSSCCSSSCCSC-HHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS--------CHHHHHHH-SCCCHHHHHHHHH
T ss_pred CchhhHHHHhhh-HHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH--------ChHHHHHH-hCCCHHHHHHHHH
Confidence 43321 1111 2222334455544556999999999999999999875 46677777 9999999999999
Q ss_pred HHHHHHh
Q 045125 296 MMNDSLI 302 (342)
Q Consensus 296 ~l~~l~~ 302 (342)
.|..++.
T Consensus 235 ~l~~~~~ 241 (283)
T 1w98_B 235 WMVPFAM 241 (283)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988775
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=5e-34 Score=263.42 Aligned_cols=201 Identities=21% Similarity=0.288 Sum_probs=167.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccCCchhhHHHHHHHHHHHHhhhccccCCccccee-e
Q 045125 95 DLDLAARQEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPKGKVWMMQLLAVACLSLAAKMEETEVPLCLDLQ-V 173 (342)
Q Consensus 95 ~i~~~~R~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~-v 173 (342)
+.+..+|..+++||.+++.+|+++++|+++|++|||||+++.++.+.+ +|++|+||||||+|+||. +|.+.++. +
T Consensus 35 ~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~---~qlv~~acL~lA~K~eE~-~~~l~d~~~~ 110 (258)
T 2i53_A 35 ATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFP---RYVTGACCLFLAGKVEET-PKKCKDIIKT 110 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcC---HHHHHHHHHHHHHccccc-cccHHHHHHH
Confidence 466789999999999999999999999999999999999999998877 999999999999999995 78888884 2
Q ss_pred cc---CCccc------cHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhhcc
Q 045125 174 GQ---SKFLF------EAKTIQRMELLVLSTLKWRMQAITPFSFLDYFTRKITDDDDDHHQTPLRALFCRSIQIITSSIK 244 (342)
Q Consensus 174 ~~---~~~~~------~~~~I~~mE~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~~~~~~~~~~~~~l~~~~~~lil~~l~ 244 (342)
+. ....| ++++|++||+.||++|+|+++.|||+.|+.+|++.++.+ ......+...+.+++..++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~-----~~~~~~~~~~A~~l~~~s~~ 185 (258)
T 2i53_A 111 ARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGD-----KNKIQKLVQMAWTFVNDSLC 185 (258)
T ss_dssp HHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSC-----HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCC-----cchHHHHHHHHHHHHHHHHc
Confidence 11 11112 489999999999999999999999999999999988765 21123577778888877788
Q ss_pred CccccccCHHHHHHHHHHHHHccCCC-CcchHHH------HHHHhcCCCHHHHHHHHHHHHHHHhcC
Q 045125 245 GIDFLEFKPSEIAAAVAISVTGETKT-VVDTEKA------ISLLTQHVKKERVLKCIKMMNDSLISG 304 (342)
Q Consensus 245 d~~~l~~~PS~IAaAai~~a~~~~~~-~~~w~~~------l~~~~~~~~~~~l~~C~~~l~~l~~~~ 304 (342)
++.++.|+||.||+||+++|++..+. .++|... +..+.+++++++|.+|++.|.++|...
T Consensus 186 ~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~~ 252 (258)
T 2i53_A 186 TTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQG 252 (258)
T ss_dssp TTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSSS
T ss_pred CCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999976553 2344321 122226899999999999999998774
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=7e-33 Score=255.74 Aligned_cols=193 Identities=20% Similarity=0.201 Sum_probs=162.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccCCchhhHHHHHHHHHHHHhhhccccCCccccee-ec
Q 045125 96 LDLAARQEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPKGKVWMMQLLAVACLSLAAKMEETEVPLCLDLQ-VG 174 (342)
Q Consensus 96 i~~~~R~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~-v~ 174 (342)
....+|..+++||.+++.+|+++++|+++|++|||||++..++.+.+ +|++|+||||||+|+||. +|.+.++. +.
T Consensus 26 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~---~qlv~~acL~lA~K~EE~-p~~l~d~~~~~ 101 (257)
T 2ivx_A 26 KELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFN---KNIISSTALFLAAKVEEQ-ARKLEHVIKVA 101 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhC---HHHHHHHHHHHHhccccC-CcCHHHHHHHH
Confidence 33589999999999999999999999999999999999999998877 999999999999999999 88898884 22
Q ss_pred --------------cCCccccHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHH
Q 045125 175 --------------QSKFLFEAKTIQRMELLVLSTLKWRMQAITPFSFLDYFTRKITDDDDDHHQTPLRALFCRSIQIIT 240 (342)
Q Consensus 175 --------------~~~~~~~~~~I~~mE~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~~~~~~~~~~~~~l~~~~~~lil 240 (342)
+..|.+.+++|++||+.||++|+|++++|||+.||..|++.++.. ..+...+++++.
T Consensus 102 ~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~---------~~~~~~A~~~~~ 172 (257)
T 2ivx_A 102 HACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRAS---------KDLAQTSYFMAT 172 (257)
T ss_dssp HHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCC---------HHHHHHHHHHHH
T ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCC---------cHHHHHHHHHHH
Confidence 223333499999999999999999999999999999999988765 456667777765
Q ss_pred hhcc-CccccccCHHHHHHHHHHHHHccCCCC-------cchHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Q 045125 241 SSIK-GIDFLEFKPSEIAAAVAISVTGETKTV-------VDTEKAISLLTQHVKKERVLKCIKMMNDSLISG 304 (342)
Q Consensus 241 ~~l~-d~~~l~~~PS~IAaAai~~a~~~~~~~-------~~w~~~l~~~~~~~~~~~l~~C~~~l~~l~~~~ 304 (342)
.++. +..++.|+||.||+||+++|+...+.. ..|... +..++++++|.+|++.|.+++...
T Consensus 173 ~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~---~~~~~~~~~l~~~~~~i~~~~~~~ 241 (257)
T 2ivx_A 173 NSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEY---VDPTVTLELLDELTHEFLQILEKT 241 (257)
T ss_dssp HHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGG---TCSSCCHHHHHHHHHHHHHHHHTS
T ss_pred hhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHH---hCCCCCHHHHHHHHHHHHHHHHhC
Confidence 5553 445899999999999999999765431 246543 225799999999999999998654
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=4e-32 Score=254.41 Aligned_cols=189 Identities=18% Similarity=0.194 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccCCchhhHHHHHHHHHHHHhhhccccCCccccee-ec--
Q 045125 98 LAARQEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPKGKVWMMQLLAVACLSLAAKMEETEVPLCLDLQ-VG-- 174 (342)
Q Consensus 98 ~~~R~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~-v~-- 174 (342)
.++|..+++||.+++.+|+++++|+++|++|||||++.+.+.+.+ +|++|+||||||+|+||..+|.+.++. ++
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~---~~lva~acLfLA~K~EE~~~~~~~di~~~~~~ 116 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSID---PVLMAPTCVFLASKVEEFGVVSNTRLIAAATS 116 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSC---HHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcC---HHHHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 478999999999999999999999999999999999999998877 999999999999999999888777774 22
Q ss_pred ----------cCCccccHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhhcc
Q 045125 175 ----------QSKFLFEAKTIQRMELLVLSTLKWRMQAITPFSFLDYFTRKITDDDDDHHQTPLRALFCRSIQIITSSIK 244 (342)
Q Consensus 175 ----------~~~~~~~~~~I~~mE~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~~~~~~~~~~~~~l~~~~~~lil~~l~ 244 (342)
...|.+++++|++||+.||++|+|+++++||+.||..|++.++.. ..+...+++++..++.
T Consensus 117 ~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~---------~~~~~~A~~~l~~sl~ 187 (285)
T 3rgf_B 117 VLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE---------DMLLPLAWRIVNDTYR 187 (285)
T ss_dssp HHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHTT
T ss_pred HHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHc
Confidence 334567999999999999999999999999999999999998754 5677888888877887
Q ss_pred CccccccCHHHHHHHHHHHHHccCCCC-cchHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 045125 245 GIDFLEFKPSEIAAAVAISVTGETKTV-VDTEKAISLLTQHVKKERVLKCIKMMNDSLIS 303 (342)
Q Consensus 245 d~~~l~~~PS~IAaAai~~a~~~~~~~-~~w~~~l~~~~~~~~~~~l~~C~~~l~~l~~~ 303 (342)
+..++.|+||.||+|||++|....+.. ..|.. . .++++++|.+|++.|.+++..
T Consensus 188 t~~~l~~~Ps~IAaAaiylA~~~~~~~~~~W~~----~-~~~~~~~l~~~~~~il~ly~~ 242 (285)
T 3rgf_B 188 TDLCLLYPPFMIALACLHVACVVQQKDARQWFA----E-LSVDMEKILEIIRVILKLYEQ 242 (285)
T ss_dssp SSHHHHSCHHHHHHHHHHHHHHHTTCCCHHHHH----T-SCSCHHHHHHHHHHHHHHHHH
T ss_pred cChhhccCHHHHHHHHHHHHHHHcCCChhhHHH----H-HCCCHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999766542 34533 2 489999999999999999865
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-32 Score=246.84 Aligned_cols=187 Identities=14% Similarity=0.138 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccC-CchhhHHHHHHHHHHHHhhhccccCCccccee-eccC--
Q 045125 101 RQEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPK-GKVWMMQLLAVACLSLAAKMEETEVPLCLDLQ-VGQS-- 176 (342)
Q Consensus 101 R~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~-~~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~-v~~~-- 176 (342)
|..+++||.+++..++++++|+++|++|||||++..++.+ .+ +|++|+||||||+|+||. ++.+.++. ++..
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~---~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~ 103 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFS---LEALVATCIYLSCKVEEC-PVHIRTICNEANDLW 103 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccC---HHHHHHHHHHHHhccccC-cccHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999988 77 999999999999999995 67888885 3322
Q ss_pred --CccccHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhhccCccccccCHH
Q 045125 177 --KFLFEAKTIQRMELLVLSTLKWRMQAITPFSFLDYFTRKITDDDDDHHQTPLRALFCRSIQIITSSIKGIDFLEFKPS 254 (342)
Q Consensus 177 --~~~~~~~~I~~mE~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~~~~~~~~~~~~~l~~~~~~lil~~l~d~~~l~~~PS 254 (342)
.+.+++++|.+||+.||++|+|++.++||+.||..|++.++.. ..+...+.+++..++.+..++.|+||
T Consensus 104 ~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~---------~~~~~~A~~~l~~s~~~~~~l~~~Ps 174 (235)
T 1zp2_A 104 SLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIIN---------QKQLEFAWSIVNDSYASSLCLMAHPH 174 (235)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSC---------HHHHHHHHHHHHHHTTTTGGGTSCHH
T ss_pred cchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHcCCchhccCHH
Confidence 2457999999999999999999999999999999999875433 45677888888778889999999999
Q ss_pred HHHHHHHHHHHccCCCC-cchHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Q 045125 255 EIAAAVAISVTGETKTV-VDTEKAISLLTQHVKKERVLKCIKMMNDSLISG 304 (342)
Q Consensus 255 ~IAaAai~~a~~~~~~~-~~w~~~l~~~~~~~~~~~l~~C~~~l~~l~~~~ 304 (342)
.||+||+++|.+..+.. +.|.. .+ .++++++|.+|++.|.+++...
T Consensus 175 ~IAaAai~lA~~~~~~~~~~~~~---~~-~~~~~~~i~~~~~~i~~ly~~~ 221 (235)
T 1zp2_A 175 QLAYAALLISCCNDENTIPKLLD---LI-KSTDAFKVILCVQRIISIYYFE 221 (235)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHH---HC-CHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhcCCCCCCCcc---hh-hcCCHHHHHHHHHHHHHHHhhC
Confidence 99999999999776542 12332 33 5899999999999999999775
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.97 E-value=5.5e-32 Score=260.80 Aligned_cols=193 Identities=19% Similarity=0.174 Sum_probs=162.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccCCchhhHHHHHHHHHHHHhhhccccCCccccee-ec
Q 045125 96 LDLAARQEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPKGKVWMMQLLAVACLSLAAKMEETEVPLCLDLQ-VG 174 (342)
Q Consensus 96 i~~~~R~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~-v~ 174 (342)
....+|..+++||.+++.+|+++++|+++|++|||||++..++.+.+ +|++|+||||||+|+||. ++.+.++. +.
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~---~qlva~acLfLA~K~EE~-p~~l~d~v~v~ 108 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFP---GNSVAPAALFLAAKVEEQ-PKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccccc---HHHHHHHHHHHHHhhccC-CCCHHHHHHHH
Confidence 44689999999999999999999999999999999999999998877 999999999999999999 78888884 22
Q ss_pred --------------cCCccccHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHH
Q 045125 175 --------------QSKFLFEAKTIQRMELLVLSTLKWRMQAITPFSFLDYFTRKITDDDDDHHQTPLRALFCRSIQIIT 240 (342)
Q Consensus 175 --------------~~~~~~~~~~I~~mE~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~~~~~~~~~~~~~l~~~~~~lil 240 (342)
+..|.+.+++|++||+.||++|+|++.+|||+.||..|+..+... ..+...+++++.
T Consensus 109 ~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~---------~~l~~~A~~ll~ 179 (358)
T 2pk2_A 109 HTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRAS---------KDLAQTSYFMAT 179 (358)
T ss_dssp HHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCC---------HHHHHHHHHHHH
T ss_pred HHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCC---------HHHHHHHHHHHH
Confidence 223433489999999999999999999999999999999988654 456777777776
Q ss_pred hhcc-CccccccCHHHHHHHHHHHHHccCCCC-------cchHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Q 045125 241 SSIK-GIDFLEFKPSEIAAAVAISVTGETKTV-------VDTEKAISLLTQHVKKERVLKCIKMMNDSLISG 304 (342)
Q Consensus 241 ~~l~-d~~~l~~~PS~IAaAai~~a~~~~~~~-------~~w~~~l~~~~~~~~~~~l~~C~~~l~~l~~~~ 304 (342)
.++. ...++.|+||.||+|||++|+...+.. ..|... +-.++++++|.+|++.|.+++...
T Consensus 180 ~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~---~~~~vt~~~l~~i~~~il~~y~~~ 248 (358)
T 2pk2_A 180 NSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEY---VDATVTLELLDELTHEFLQILEKT 248 (358)
T ss_dssp HHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTT---SCSSCCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHH---HhccCCHHHHHHHHHHHHHHHHhC
Confidence 6654 334899999999999999999765531 246543 214799999999999999988554
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.97 E-value=1.3e-29 Score=241.14 Aligned_cols=201 Identities=14% Similarity=0.146 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHhccCcccCCchhhHHHHHHHHHHHHhhhccccCCccccee-ec
Q 045125 98 LAARQEAVDWIAKVHSHFG--FGPLCSYLTINYLDRFLSAYELPKGKVWMMQLLAVACLSLAAKMEETEVPLCLDLQ-VG 174 (342)
Q Consensus 98 ~~~R~~~vdWi~~v~~~~~--l~~~T~~lAv~~lDRfLs~~~~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~-v~ 174 (342)
..+|...++||.+++.+|+ ++++|+++|++|||||++..++.+.+ +|++|+||||||+|+||. ++.+.++. +.
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~---~~lva~acLfLA~K~EE~-~~~l~d~v~~~ 129 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYH---PRIIMLTCAFLACKVDEF-NVSSPQFVGNL 129 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcC---HHHHHHHHHHHHHhhhcC-CCCHHHHHHHh
Confidence 4678999999999999999 99999999999999999999998877 999999999999999998 57788884 22
Q ss_pred cCC---ccccHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhhccCcccccc
Q 045125 175 QSK---FLFEAKTIQRMELLVLSTLKWRMQAITPFSFLDYFTRKITDDDDDHHQTPLRALFCRSIQIITSSIKGIDFLEF 251 (342)
Q Consensus 175 ~~~---~~~~~~~I~~mE~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~~~~~~~~~~~~~l~~~~~~lil~~l~d~~~l~~ 251 (342)
... ..+++++|++||+.||++|+|++.++||+.||..|+..+...-.. ...+ ..+...+++++..++.+..++.|
T Consensus 130 ~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~-~~~~-~~l~~~A~~~l~~sl~t~~~l~~ 207 (323)
T 1jkw_A 130 RESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI-LENP-EILRKTADDFLNRIALTDAYLLY 207 (323)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTT-CCCH-HHHHHHHHHHHHHHTTSTHHHHS
T ss_pred ccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhcc-CCCH-HHHHHHHHHHHHHHHhccHHHcC
Confidence 111 135789999999999999999999999999999999765210000 0122 45677788888777778889999
Q ss_pred CHHHHHHHHHHHHHccCCC-CcchHHHHHHH-hcCCCHHHHHHHHHHHHHHHhcC
Q 045125 252 KPSEIAAAVAISVTGETKT-VVDTEKAISLL-TQHVKKERVLKCIKMMNDSLISG 304 (342)
Q Consensus 252 ~PS~IAaAai~~a~~~~~~-~~~w~~~l~~~-~~~~~~~~l~~C~~~l~~l~~~~ 304 (342)
+||.||+||+++|....+. .+.|...+... .++++.++|.+|++.|..++...
T Consensus 208 ~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~ 262 (323)
T 1jkw_A 208 TPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKY 262 (323)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHHcc
Confidence 9999999999999976654 25787764322 14679999999999999998764
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.93 E-value=6.4e-25 Score=196.07 Aligned_cols=187 Identities=17% Similarity=0.158 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccCCchhhHHHHHHHHHHHHhhhccccCCcccceeeccCCc
Q 045125 99 AARQEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPKGKVWMMQLLAVACLSLAAKMEETEVPLCLDLQVGQSKF 178 (342)
Q Consensus 99 ~~R~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~v~~~~~ 178 (342)
+.+....+||.+++..+++++.|+.+|+.|++||+....+...+ .+++++||||||+|+||. ++.+.++ +...+
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~---~~~v~aaclylAcK~ee~-p~~l~di-~~~~~- 76 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRA---NDAIASACLYIACRQEGV-PRTFKEI-CAVSR- 76 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHH-HHTSS-
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCC---HHHHHHHHHHHHHHhcCC-CCCHHHH-HHHHC-
Confidence 34678899999999999999999999999999999999888777 999999999999999998 7888888 44433
Q ss_pred cccHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhhccCccccccCHHHHHH
Q 045125 179 LFEAKTIQRMELLVLSTLKWRMQAITPFSFLDYFTRKITDDDDDHHQTPLRALFCRSIQIITSSIKGIDFLEFKPSEIAA 258 (342)
Q Consensus 179 ~~~~~~I~~mE~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~~~~~~~~~~~~~l~~~~~~lil~~l~d~~~l~~~PS~IAa 258 (342)
++.++|.++|+.||+.|+|++..++|+.||..|...++.+ ..+...+.+++..+..+.-++.++|+.||+
T Consensus 77 -~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~---------~~~~~~A~~i~~~~~~~~l~~g~~P~~IAa 146 (207)
T 1c9b_A 77 -ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLP---------KQVQMAATHIARKAVELDLVPGRSPISVAA 146 (207)
T ss_dssp -SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHTTCSTTCCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHHHHcCccCCCChHHHHH
Confidence 5899999999999999999999999999999999998766 345555666665555566678999999999
Q ss_pred HHHHHHHccCCCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 045125 259 AVAISVTGETKTVVDTEKAISLLTQHVKKERVLKCIKMMNDSLIS 303 (342)
Q Consensus 259 Aai~~a~~~~~~~~~w~~~l~~~~~~~~~~~l~~C~~~l~~l~~~ 303 (342)
||+++|.+..+. +.|.+.+... .++++..|.+|++.|.+....
T Consensus 147 AaiylA~~~~~~-~~~~~~i~~~-~~v~~~tI~~~~~~l~~~l~~ 189 (207)
T 1c9b_A 147 AAIYMASQASAE-KRTQKEIGDI-AGVADVTIRQSYRLIYPRAPD 189 (207)
T ss_dssp HHHHHHHHTSSS-CCCHHHHHHH-HTCCHHHHHHHHHHHGGGHHH
T ss_pred HHHHHHHHHHCC-CCCHHHHHHH-hCCCHHHHHHHHHHHHHHHHH
Confidence 999999987765 6677788877 899999999999998775533
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.87 E-value=4.4e-21 Score=170.20 Aligned_cols=187 Identities=12% Similarity=0.121 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccCCchhhHHHHHHHHHHHHhhhccccCCcccceeeccCCc
Q 045125 99 AARQEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPKGKVWMMQLLAVACLSLAAKMEETEVPLCLDLQVGQSKF 178 (342)
Q Consensus 99 ~~R~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~v~~~~~ 178 (342)
+......++|.+++..+++++.+...|..|++||+....+...+ .+.++++|+++|+|.||. +..+.|+. ...+
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~---~~~vaaAclylAcr~~~~-p~~l~di~-~~~~- 80 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRS---IESVMAACVYAACRLLKV-PRTLDEIA-DIAR- 80 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCC---HHHHHHHHHHHHHHHHTC-CCCHHHHH-HHTT-
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCC---HHHHHHHHHHHHHHHcCC-CCCHHHHH-HHHC-
Confidence 44668899999999999999999999999999999998887666 999999999999999995 78888884 3333
Q ss_pred cccHHHHHHHHHHHHHHcCCcccc--CChHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhhccCccccccCHHHH
Q 045125 179 LFEAKTIQRMELLVLSTLKWRMQA--ITPFSFLDYFTRKITDDDDDHHQTPLRALFCRSIQIITSSIKGIDFLEFKPSEI 256 (342)
Q Consensus 179 ~~~~~~I~~mE~~IL~~L~w~l~~--pTp~~Fl~~fl~~~~~~~~~~~~~~~~~l~~~~~~lil~~l~d~~~l~~~PS~I 256 (342)
++..+|.++++.|++.|+|++.. ++|..||..|...++.+ ..+...+++++..+..+..+..++|+.|
T Consensus 81 -v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~---------~~v~~~A~~i~~~~~~~~~~~gr~P~~i 150 (200)
T 1ais_B 81 -VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLS---------EKVRRRAIEILDEAYKRGLTSGKSPAGL 150 (200)
T ss_dssp -SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCC---------HHHHHHHHHHHHHHHHTTCCTTSCHHHH
T ss_pred -CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHHcCcccCCCHHHH
Confidence 58999999999999999999999 99999999999999876 4567777787776666777889999999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 045125 257 AAAVAISVTGETKTVVDTEKAISLLTQHVKKERVLKCIKMMNDSLIS 303 (342)
Q Consensus 257 AaAai~~a~~~~~~~~~w~~~l~~~~~~~~~~~l~~C~~~l~~l~~~ 303 (342)
||||+++|++..+. +.|.+.+... +++++..|.+|++.|.+.+..
T Consensus 151 AaAaly~A~~~~~~-~~t~~ei~~~-~~vs~~ti~~~~~~l~~~l~~ 195 (200)
T 1ais_B 151 VAAALYIASLLEGE-KRTQREVAEV-ARVTEVTVRNRYKELVEKLKI 195 (200)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHH-HTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC-CCCHHHHHHH-hCCCHHHHHHHHHHHHHHcCC
Confidence 99999999987776 6688888888 899999999999999987654
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.4e-17 Score=157.97 Aligned_cols=183 Identities=9% Similarity=0.025 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccCCchhhHHHHHHHHHHHHhhhccccCCcccceeeccCCccc
Q 045125 101 RQEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPKGKVWMMQLLAVACLSLAAKMEETEVPLCLDLQVGQSKFLF 180 (342)
Q Consensus 101 R~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~v~~~~~~~ 180 (342)
...+...|..++..++++..+.-.|..||.|++....+...+ .+.+++||||||+|.|+. |..+.++ ....+ +
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~---~~~vaaAclyiAcR~e~~-prtl~ei-~~~~~--v 198 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEV-ARTFKEI-QSLIH--V 198 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCC---SHHHHTTTTTTTSBTTBS-SCCHHHH-HHSSS--C
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCc---HHHHHHHHHHHHHHHcCC-CccHHHH-HHHHC--C
Confidence 457788899999999999999999999999999998887766 899999999999999887 6788888 33333 5
Q ss_pred cHHHHHHHHHHHHHHcC------------CccccCChHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhhccCccc
Q 045125 181 EAKTIQRMELLVLSTLK------------WRMQAITPFSFLDYFTRKITDDDDDHHQTPLRALFCRSIQIITSSIKGIDF 248 (342)
Q Consensus 181 ~~~~I~~mE~~IL~~L~------------w~l~~pTp~~Fl~~fl~~~~~~~~~~~~~~~~~l~~~~~~lil~~l~d~~~ 248 (342)
++++|.++++.|++.|+ +.+..++|..||..|...++.. ..+...+++++..+..+.-+
T Consensus 199 ~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~---------~~v~~~A~~i~~~~~~~~l~ 269 (345)
T 3k7a_M 199 KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLP---------MQVTTSAEYTAKKCKEIKEI 269 (345)
T ss_dssp CSHHHHHHHHHHHHHHTCC-------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHHhchh
Confidence 88999999999999999 9999999999999999998776 34556667776666666667
Q ss_pred cccCHHHHHHHHHHHHHccCCCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 045125 249 LEFKPSEIAAAVAISVTGETKTVVDTEKAISLLTQHVKKERVLKCIKMMNDSL 301 (342)
Q Consensus 249 l~~~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~~~~~~~~l~~C~~~l~~l~ 301 (342)
..++|+.||||||++|....+. ..|.+.+... .++++..|+.+++.|.+..
T Consensus 270 ~Gr~P~~IAaAaIylAa~~~~~-~~t~~eIa~~-~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 270 AGKSPITIAVVSIYLNILLFQI-PITAAKVGQT-LQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp -----------------------------------------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHH-HCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999977655 5577778777 8999999999999988765
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.22 E-value=1.4e-11 Score=117.66 Aligned_cols=182 Identities=10% Similarity=0.043 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccCCchhhHHHHHHHHHHHHhhhccccCCcccceeeccCCcccc
Q 045125 102 QEAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPKGKVWMMQLLAVACLSLAAKMEETEVPLCLDLQVGQSKFLFE 181 (342)
Q Consensus 102 ~~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~v~~~~~~~~ 181 (342)
......|.+++..++++..+.-.|..++.++.....+.... ...++++|+|+|+|.++. |..+.++. ...+ .+
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs---~e~vaAAclYiACR~~~~-prtl~eI~-~~~~--v~ 199 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEV-ARTFKEIQ-SLIH--VK 199 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCC---HHHHHHHHHHHHHHHTCC-BCCHHHHH-HHHT--CC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCC---HHHHHHHHHHHHHHhcCC-CccHHHHH-HHhC--CC
Confidence 45566788999999999999999999999999987776666 899999999999999986 56677764 2222 47
Q ss_pred HHHHHHHHHHHHHHcCCc------------cccCChHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhhccCcccc
Q 045125 182 AKTIQRMELLVLSTLKWR------------MQAITPFSFLDYFTRKITDDDDDHHQTPLRALFCRSIQIITSSIKGIDFL 249 (342)
Q Consensus 182 ~~~I~~mE~~IL~~L~w~------------l~~pTp~~Fl~~fl~~~~~~~~~~~~~~~~~l~~~~~~lil~~l~d~~~l 249 (342)
+++|-+..+.|.+.|+.. +...+|..|+..|...++.. ..+...+.+++..+..+.-..
T Consensus 200 ~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~---------~~v~~~A~~i~~~~~~~~i~~ 270 (345)
T 4bbr_M 200 TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLP---------MQVTTSAEYTAKKCKEIKEIA 270 (345)
T ss_dssp TTHHHHHHHHHHHCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCc---------HHHHHHHHHHHHHHHhccccc
Confidence 889999999999999974 67789999999999988776 234445555554444344456
Q ss_pred ccCHHHHHHHHHHHHHccCCCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 045125 250 EFKPSEIAAAVAISVTGETKTVVDTEKAISLLTQHVKKERVLKCIKMMNDSL 301 (342)
Q Consensus 250 ~~~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~~~~~~~~l~~C~~~l~~l~ 301 (342)
.-+|+.||||||++|....+. ..-.+.+... .++++.-|+..++.|.+..
T Consensus 271 GR~P~~IAAAaIylAa~l~g~-~~t~~eIa~v-~~Vse~TIr~rykel~~~~ 320 (345)
T 4bbr_M 271 GKSPITIAVVSIYLNILLFQI-PITAAKVGQT-LQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp ----------------------------------------------------
T ss_pred CCChHHHHHHHHHHHHHHhCC-CCCHHHHHHH-HCCCHHHHHHHHHHHHHHH
Confidence 789999999999999976554 3344556666 7888888888887776554
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.23 E-value=4e-06 Score=77.37 Aligned_cols=110 Identities=8% Similarity=0.061 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccCCchhhHHHHHHHHHHHHhhhccccCCccccee-eccCCccccH
Q 045125 104 AVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPKGKVWMMQLLAVACLSLAAKMEETEVPLCLDLQ-VGQSKFLFEA 182 (342)
Q Consensus 104 ~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~-v~~~~~~~~~ 182 (342)
+-+|+..+..+-++++.++-.|+.|+||+......-...++..+-+-++||.+|+|+-+.....-.... + + .++.
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV--g--Gisl 152 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV--G--GVRC 152 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH--H--TSCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc--c--CcCH
Confidence 456888999999999999999999999998754322222455788889999999999665545444543 3 2 2589
Q ss_pred HHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCC
Q 045125 183 KTIQRMELLVLSTLKWRMQAITPFSFLDYFTRKITD 218 (342)
Q Consensus 183 ~~I~~mE~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~ 218 (342)
+++-+||+..|..|+|++.+. +..|..+++.....
T Consensus 153 ~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~~~ 187 (293)
T 2pmi_B 153 HELNILENDFLKRVNYRIIPR-DHNITLCSIEQKQK 187 (293)
T ss_dssp HHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHHhhc
Confidence 999999999999999999665 55677777665443
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=95.39 E-value=0.12 Score=44.41 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=65.7
Q ss_pred ChHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHccCCCCcchHHHHHHHhc
Q 045125 204 TPFSFLDYFTRKITDDDDDHHQTPLRALFCRSIQIITSSIKGIDFLEFKPSEIAAAVAISVTGETKTVVDTEKAISLLTQ 283 (342)
Q Consensus 204 Tp~~Fl~~fl~~~~~~~~~~~~~~~~~l~~~~~~lil~~l~d~~~l~~~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~~ 283 (342)
..+.+|..+...++.. ..+...+..+.-.......+-..+|-.+|+||+++|++..+. +.-.+.+... +
T Consensus 11 ~a~~~I~~~~~~L~L~---------~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~-p~~l~di~~~-~ 79 (200)
T 1ais_B 11 FALSELDRITAQLKLP---------RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKV-PRTLDEIADI-A 79 (200)
T ss_dssp HHHHHHHHHHHHHTCC---------HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTC-CCCHHHHHHH-T
T ss_pred HHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCC-CCCHHHHHHH-H
Confidence 4567888888888776 555666666654444233345689999999999999987765 4445556666 7
Q ss_pred CCCHHHHHHHHHHHHHHHhc
Q 045125 284 HVKKERVLKCIKMMNDSLIS 303 (342)
Q Consensus 284 ~~~~~~l~~C~~~l~~l~~~ 303 (342)
+++..+|..++..|.+.+..
T Consensus 80 ~v~~~~i~~~~~~l~~~L~~ 99 (200)
T 1ais_B 80 RVDKKEIGRSYRFIARNLNL 99 (200)
T ss_dssp TSCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999886543
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=94.41 E-value=0.27 Score=42.48 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHccCCCCcchHHHHHHHhcC
Q 045125 205 PFSFLDYFTRKITDDDDDHHQTPLRALFCRSIQIITSSIKGIDFLEFKPSEIAAAVAISVTGETKTVVDTEKAISLLTQH 284 (342)
Q Consensus 205 p~~Fl~~fl~~~~~~~~~~~~~~~~~l~~~~~~lil~~l~d~~~l~~~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~~~ 284 (342)
.+.+|..+...++.. +.....+..+....+....+-.++|-.||+||+++|++..+. +.-.+.+... ++
T Consensus 8 a~~~I~~~~~~L~L~---------~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~-~~ 76 (207)
T 1c9b_A 8 AFKEITTMADRINLP---------RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAV-SR 76 (207)
T ss_dssp HHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHT-SS
T ss_pred HHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHH-HC
Confidence 456777777777765 445555555554444344567799999999999999987766 4444555555 78
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 045125 285 VKKERVLKCIKMMNDSLIS 303 (342)
Q Consensus 285 ~~~~~l~~C~~~l~~l~~~ 303 (342)
++..+|..+...|.+.+..
T Consensus 77 ~~~~~i~~~~~~ll~~L~~ 95 (207)
T 1c9b_A 77 ISKKEIGRCFKLILKALET 95 (207)
T ss_dssp SCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHCC
Confidence 9999999999888776543
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=91.90 E-value=0.92 Score=42.67 Aligned_cols=86 Identities=16% Similarity=0.068 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhhccCccc-cccCHHHHHHHHHHHHHccCCCCcchHHHHHHHhc
Q 045125 205 PFSFLDYFTRKITDDDDDHHQTPLRALFCRSIQIITSSIKGIDF-LEFKPSEIAAAVAISVTGETKTVVDTEKAISLLTQ 283 (342)
Q Consensus 205 p~~Fl~~fl~~~~~~~~~~~~~~~~~l~~~~~~lil~~l~d~~~-l~~~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~~ 283 (342)
.+..|..+...++.. ..+...+.++.-... +..+ -..+...|||||+++|++..+. +.....+..+ +
T Consensus 129 a~~~I~~~~~~L~Lp---------~~v~d~A~~lyk~a~-~~~~~rGrs~e~vaAAclYiACR~~~~-prtl~eI~~~-~ 196 (345)
T 4bbr_M 129 AFAKITMLCDAAELP---------KIVKDCAKEAYKLCH-DEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSL-I 196 (345)
T ss_dssp HHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHT-TCTTTTTCCHHHHHHHHHHHHHHHTCC-BCCHHHHHHH-H
T ss_pred HHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHH-hcCCccCCCHHHHHHHHHHHHHHhcCC-CccHHHHHHH-h
Confidence 345556666676666 566677777665555 5554 4577889999999999998776 5555666666 7
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 045125 284 HVKKERVLKCIKMMNDSLI 302 (342)
Q Consensus 284 ~~~~~~l~~C~~~l~~l~~ 302 (342)
++++.+|..++..|.+.+.
T Consensus 197 ~v~~keigr~~k~l~~~L~ 215 (345)
T 4bbr_M 197 HVKTKEFGKTLNIMKNILR 215 (345)
T ss_dssp TCCTTHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHHhC
Confidence 9999999999999987554
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=90.22 E-value=0.41 Score=45.03 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHccCCCCcchHHHHHHHhcC
Q 045125 205 PFSFLDYFTRKITDDDDDHHQTPLRALFCRSIQIITSSIKGIDFLEFKPSEIAAAVAISVTGETKTVVDTEKAISLLTQH 284 (342)
Q Consensus 205 p~~Fl~~fl~~~~~~~~~~~~~~~~~l~~~~~~lil~~l~d~~~l~~~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~~~ 284 (342)
.+.+|+.+...++.. +.+...+..+.-.......+-..+.-.|||||+++|++..+. +.-.+.+... ++
T Consensus 129 a~~~I~~~~~~L~Lp---------~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~-~~ 197 (345)
T 3k7a_M 129 AFAKITMLCDAAELP---------KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSL-IH 197 (345)
T ss_dssp HHHHHHHHHHHTTCC---------HHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHS-SS
T ss_pred HHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHH-HC
Confidence 346667777777666 566666666665555233345678899999999999987766 5555566666 79
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 045125 285 VKKERVLKCIKMMNDSLI 302 (342)
Q Consensus 285 ~~~~~l~~C~~~l~~l~~ 302 (342)
+++.+|..|+..|.+.+.
T Consensus 198 v~~keIgr~~~~l~~~L~ 215 (345)
T 3k7a_M 198 VKTKEFGKTLNIMKNILR 215 (345)
T ss_dssp CCSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999988765
No 24
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=85.58 E-value=6 Score=35.03 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHhc-cCcccCCchhhHHHHHHHHHHHHhhhccccCCcccc---ee-eccCCccc
Q 045125 106 DWIAKVHSHFGFGPLCSYLTINYLDRFLS-AYELPKGKVWMMQLLAVACLSLAAKMEETEVPLCLD---LQ-VGQSKFLF 180 (342)
Q Consensus 106 dWi~~v~~~~~l~~~T~~lAv~~lDRfLs-~~~~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~d---l~-v~~~~~~~ 180 (342)
+++......++.+.++..+|..++..-+. ..-.-... ...+|++|+++|+++-....|...+ .. .-.. .+
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~---Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~--~~ 222 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYK---PTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDP--TV 222 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSC---HHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCS--SC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCC---HHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCC--CC
Confidence 35556667778888888888888855442 22233444 7899999999999996654443211 10 1111 25
Q ss_pred cHHHHHHHHHHHHHHc
Q 045125 181 EAKTIQRMELLVLSTL 196 (342)
Q Consensus 181 ~~~~I~~mE~~IL~~L 196 (342)
+.++|...-..|+..+
T Consensus 223 ~~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 223 TLELLDELTHEFLQIL 238 (257)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8899999888888764
No 25
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=85.18 E-value=4.1 Score=36.06 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCCCh----hHHHHHHHHHHHHhccCcccCCchhhHHHHHHHHHHHHhhhccccCCcccc-e---e-eccC
Q 045125 106 DWIAKVHSHFGFGP----LCSYLTINYLDRFLSAYELPKGKVWMMQLLAVACLSLAAKMEETEVPLCLD-L---Q-VGQS 176 (342)
Q Consensus 106 dWi~~v~~~~~l~~----~T~~lAv~~lDRfLs~~~~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~d-l---~-v~~~ 176 (342)
+++......++.+. +...+|..+++.-+.....-... ...+|+||+++|+++-....|.... . . ...-
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~---Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~ 229 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWE---PEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF 229 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSC---HHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccC---hHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh
Confidence 45666667777766 56777888888776655555555 7799999999999996553332111 0 0 0100
Q ss_pred CccccHHHHHHHHHHHHHHcC
Q 045125 177 KFLFEAKTIQRMELLVLSTLK 197 (342)
Q Consensus 177 ~~~~~~~~I~~mE~~IL~~L~ 197 (342)
.-.++.++|...-..|++...
T Consensus 230 ~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 230 VQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp SSSCCHHHHHHHHHHHHTTTS
T ss_pred ccCCCHHHHHHHHHHHHHHHh
Confidence 013589999998888887654
No 26
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=85.16 E-value=1.8 Score=39.44 Aligned_cols=83 Identities=11% Similarity=0.118 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHhccCcccCCchhhHHHHHHHHHHHHhhhccccCCcccceeeccCCccccHHHH
Q 045125 106 DWIAKVHSHFGFGPLCSYLTINYLDRFLSAYELPKGKVWMMQLLAVACLSLAAKMEETEVPLCLDLQVGQSKFLFEAKTI 185 (342)
Q Consensus 106 dWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~v~~~~~~~~~~~I 185 (342)
+++......++.+.++..+|..++..-+.....-... ...+|++|+++|+++.....+. . ... ..++.++|
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~---Ps~IAaAaiylA~~~~~~~~~~---W-~~~--~~~~~~~l 229 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYP---PFMIALACLHVACVVQQKDARQ---W-FAE--LSVDMEKI 229 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSC---HHHHHHHHHHHHHHHTTCCCHH---H-HHT--SCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccC---HHHHHHHHHHHHHHHcCCChhh---H-HHH--HCCCHHHH
Confidence 4566667777888888899999988876554444444 7789999999999986543211 1 111 23588899
Q ss_pred HHHHHHHHHHcC
Q 045125 186 QRMELLVLSTLK 197 (342)
Q Consensus 186 ~~mE~~IL~~L~ 197 (342)
..+-..|++...
T Consensus 230 ~~~~~~il~ly~ 241 (285)
T 3rgf_B 230 LEIIRVILKLYE 241 (285)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887644
No 27
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=81.57 E-value=11 Score=32.90 Aligned_cols=88 Identities=8% Similarity=0.084 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhhccCccccc-cCHHHHHHHHHHHHHccCCCCcchHHHHHHHhc-
Q 045125 206 FSFLDYFTRKITDDDDDHHQTPLRALFCRSIQIITSSIKGIDFLE-FKPSEIAAAVAISVTGETKTVVDTEKAISLLTQ- 283 (342)
Q Consensus 206 ~~Fl~~fl~~~~~~~~~~~~~~~~~l~~~~~~lil~~l~d~~~l~-~~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~~- 283 (342)
.++|......++.. ......+..++...+....+.. +.|-.||+||+++|++......... .+.....
T Consensus 32 ~~~i~~v~~~l~L~---------~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~-d~~~~~~~ 101 (235)
T 1zp2_A 32 WKVVQTFGDRLRLR---------QRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIR-TICNEAND 101 (235)
T ss_dssp HHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHH-HHHHHHHT
T ss_pred HHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHH-HHHHHHHH
Confidence 34555555555544 3334444444333332345667 8999999999999998665533332 2222211
Q ss_pred ------CCCHHHHHHHHHHHHHHHhc
Q 045125 284 ------HVKKERVLKCIKMMNDSLIS 303 (342)
Q Consensus 284 ------~~~~~~l~~C~~~l~~l~~~ 303 (342)
.++.++|..+-..|.+.+.-
T Consensus 102 ~~~~~~~~~~~~I~~~E~~iL~~L~f 127 (235)
T 1zp2_A 102 LWSLKVKLSRSNISEIEFEIISVLDA 127 (235)
T ss_dssp TCCCSSCCCHHHHHHHHHHHHHHTTT
T ss_pred HccchhhccHHHHHHHHHHHHHHCCC
Confidence 57899999998888776543
No 28
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=80.34 E-value=4.5 Score=38.05 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=57.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHhccCc-ccCCchhhHHHHHHHHHHHHhhhccccCCcccc---ee-eccCCccc
Q 045125 106 DWIAKVHSHFGFGPLCSYLTINYLDRFLSAYE-LPKGKVWMMQLLAVACLSLAAKMEETEVPLCLD---LQ-VGQSKFLF 180 (342)
Q Consensus 106 dWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~-~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~d---l~-v~~~~~~~ 180 (342)
+||......++.+.++..+|..++..-+.... .-... ...+|++|+++|+++-....|...+ .. +-.. .+
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~---Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~--~v 229 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYT---PPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDA--TV 229 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSC---HHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCS--SC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccC---HHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhc--cC
Confidence 35566667778888888889888866553222 33444 7899999999999997654443211 10 1111 24
Q ss_pred cHHHHHHHHHHHHHHc
Q 045125 181 EAKTIQRMELLVLSTL 196 (342)
Q Consensus 181 ~~~~I~~mE~~IL~~L 196 (342)
+.++|...-..|+..+
T Consensus 230 t~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 230 TLELLDELTHEFLQIL 245 (358)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8899999999888876
No 29
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=68.11 E-value=41 Score=29.79 Aligned_cols=55 Identities=4% Similarity=-0.055 Sum_probs=37.6
Q ss_pred cccccCHHHHHHHHHHHHHccCCCCcchHHHHHHHhc--CCCHHHHHHHHHHHHHHHh
Q 045125 247 DFLEFKPSEIAAAVAISVTGETKTVVDTEKAISLLTQ--HVKKERVLKCIKMMNDSLI 302 (342)
Q Consensus 247 ~~l~~~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~~--~~~~~~l~~C~~~l~~l~~ 302 (342)
.+....+-.+|+||+++|.+.....+.--+.+..+ + .|++++|.++-..|.+.+.
T Consensus 74 ~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~-~~~~~~~~eI~~mE~~IL~~L~ 130 (269)
T 2b9r_A 74 SVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFV-TDNTYTKHQIRQMEMKILRALN 130 (269)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TCSSSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHH-hcCCCCHHHHHHHHHHHHHHcC
Confidence 34556788899999999998644422223334444 4 3899999999888777654
No 30
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=67.73 E-value=12 Score=32.94 Aligned_cols=84 Identities=11% Similarity=0.047 Sum_probs=49.0
Q ss_pred HHHHHHHHhCCChhHH----HHHHHHHHHHhccCcccCCchhhHHHHHHHHHHHHhhhccccCCc----ccceeeccCCc
Q 045125 107 WIAKVHSHFGFGPLCS----YLTINYLDRFLSAYELPKGKVWMMQLLAVACLSLAAKMEETEVPL----CLDLQVGQSKF 178 (342)
Q Consensus 107 Wi~~v~~~~~l~~~T~----~lAv~~lDRfLs~~~~~~~~~~~lqLlavaCL~IAsK~eE~~~p~----~~dl~v~~~~~ 178 (342)
|+......++.+.++. ..|..+++.-+.....-... ...+|++|+++|.+.....+.. ...+ ....+
T Consensus 155 fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~---PS~iAaAai~la~~~~~~~~~~w~~~~~~l-~~~tg- 229 (254)
T 2f2c_A 155 FLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLS---PGLICAGGLLTTIETDNTNCRPWTCYLEDL-SSILN- 229 (254)
T ss_dssp SHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSC---HHHHHHHHHHHHHHTTCCSSCCTHHHHHHH-HHHHT-
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccC---HHHHHHHHHHHHHHhcCCCCCChHHHHHHH-HHHHC-
Confidence 4444555666665542 34566666555444444555 7789999999999995222111 2333 22223
Q ss_pred cccHHHHHHHHHHHHHHc
Q 045125 179 LFEAKTIQRMELLVLSTL 196 (342)
Q Consensus 179 ~~~~~~I~~mE~~IL~~L 196 (342)
++.++|...=..|.+.+
T Consensus 230 -~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 230 -FSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp -CCHHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHHH
Confidence 47888887766666543
No 31
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=64.80 E-value=15 Score=32.45 Aligned_cols=84 Identities=10% Similarity=-0.027 Sum_probs=47.9
Q ss_pred HHHHHHHHHhCCChhH----HHHHHHHHHHHhccCcccCCchhhHHHHHHHHHHHHhhhccccC-----CcccceeeccC
Q 045125 106 DWIAKVHSHFGFGPLC----SYLTINYLDRFLSAYELPKGKVWMMQLLAVACLSLAAKMEETEV-----PLCLDLQVGQS 176 (342)
Q Consensus 106 dWi~~v~~~~~l~~~T----~~lAv~~lDRfLs~~~~~~~~~~~lqLlavaCL~IAsK~eE~~~-----p~~~dl~v~~~ 176 (342)
+|+......++.+.++ ..+|-.+++.-+.....-... ...+|++|+++|.+.-...+ +-...+ ....
T Consensus 153 ~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~---PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l-~~~t 228 (257)
T 1g3n_C 153 DVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLP---ASIISAAGCALLVPANVIPQDTHSGGVVPQL-ASIL 228 (257)
T ss_dssp HHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSC---HHHHHHHHHHHHCCGGGSCC-----CHHHHH-HHHH
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcC---HHHHHHHHHHHHHHHhCCCcccchhhHHHHH-HHHH
Confidence 4455555566665544 234555666555444444444 67899999999999865321 112222 1122
Q ss_pred CccccHHHHHHHHHHHHHH
Q 045125 177 KFLFEAKTIQRMELLVLST 195 (342)
Q Consensus 177 ~~~~~~~~I~~mE~~IL~~ 195 (342)
+ ++.++|...=..|.+.
T Consensus 229 ~--~~~~~l~~c~~~i~~l 245 (257)
T 1g3n_C 229 G--CDVSVLQAAVEQILTS 245 (257)
T ss_dssp T--CCHHHHHHHHHHHHHH
T ss_pred C--cCHHHHHHHHHHHHHH
Confidence 2 4777887766666554
No 32
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=59.54 E-value=39 Score=29.74 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=35.3
Q ss_pred cCHHHHHHHHHHHHHccCCCCcchHHHHHHHhc--CCCHHHHHHHHHHHHHHHhc
Q 045125 251 FKPSEIAAAVAISVTGETKTVVDTEKAISLLTQ--HVKKERVLKCIKMMNDSLIS 303 (342)
Q Consensus 251 ~~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~~--~~~~~~l~~C~~~l~~l~~~ 303 (342)
.+.-.+|+||+++|.+.....+.-.+.+..+ + .+++++|..+-..|.+.+.-
T Consensus 79 ~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i-~~~~~~~~~i~~mE~~iL~~L~~ 132 (260)
T 2cch_B 79 GKLQLVGTAAMLLASKFEEIYPPEVAEFVYI-TDDTYTKKQVLRMEHLVLKVLTF 132 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTSSSCHHHHHHHHHHHHHHTTT
T ss_pred HHHhHHHHHHHHHHHHhcccCCCCHHHHHHH-HcCCcCHHHHHHHHHHHHHHcCC
Confidence 4456789999999998655423233344444 4 48999999998888776543
No 33
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=58.55 E-value=57 Score=28.80 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=36.3
Q ss_pred cccCHHHHHHHHHHHHHccCCCCcchHHHHHHHh-cCCCHHHHHHHHHHHHHHHhc
Q 045125 249 LEFKPSEIAAAVAISVTGETKTVVDTEKAISLLT-QHVKKERVLKCIKMMNDSLIS 303 (342)
Q Consensus 249 l~~~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~-~~~~~~~l~~C~~~l~~l~~~ 303 (342)
...++-.+|+||+++|.+.....+.--+.+..+. ..|++++|..+-..|.+.+.-
T Consensus 95 ~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~ 150 (271)
T 2w96_A 95 KKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKW 150 (271)
T ss_dssp CTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCC
Confidence 3456788899999999986544222223333331 238999999998887776543
No 34
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=55.04 E-value=23 Score=32.28 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=39.3
Q ss_pred HHHHHHHHhccCcccCCchhhHHHHHHHHHHHHhhhccccCCcc----cceeeccCCccccHHHHHHHHHHHHHHcCC
Q 045125 125 TINYLDRFLSAYELPKGKVWMMQLLAVACLSLAAKMEETEVPLC----LDLQVGQSKFLFEAKTIQRMELLVLSTLKW 198 (342)
Q Consensus 125 Av~~lDRfLs~~~~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~----~dl~v~~~~~~~~~~~I~~mE~~IL~~L~w 198 (342)
|-++++.-+....+-... ...+|++|+++|.+.-+..++.. ..| ....+ ++.++|...-..|+..+.=
T Consensus 196 a~~~l~lsl~d~~~l~~~---PS~IAaAai~lA~~~l~~~~~w~~~w~~~L-~~~tg--~~~~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 196 AQTFLALCATDYTFAMYP---PSMIATGSIGAAVQGLGACSMSGDELTELL-AGITG--TEVDCLRACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHCGGGTTSC---HHHHHHHHHHHHHHTCC---CCHHHHHHHH-HHHHT--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhccCC---HHHHHHHHHHHHHHHhcCCCCchhhHHHHH-HHHHC--CCHHHHHHHHHHHHHHHHH
Confidence 444444444433444444 67899999999999876543221 222 12222 4888888877777776653
No 35
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=52.21 E-value=97 Score=28.24 Aligned_cols=71 Identities=13% Similarity=0.104 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhccCccccccCHHHHHHHHHHHHHccCCCCcchHHHHHHHhcCCC-------HHHHHHHHHHHHHHH
Q 045125 229 RALFCRSIQIITSSIKGIDFLEFKPSEIAAAVAISVTGETKTVVDTEKAISLLTQHVK-------KERVLKCIKMMNDSL 301 (342)
Q Consensus 229 ~~l~~~~~~lil~~l~d~~~l~~~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~~~~~-------~~~l~~C~~~l~~l~ 301 (342)
......+..++...+....+..+.|-.||+||+++|++.-........ +... ...+ .++|..+-..|.+-+
T Consensus 77 ~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d-~v~~-~~~~p~~~~~~~~~Il~~E~~iL~~L 154 (323)
T 1jkw_A 77 RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQ-FVGN-LRESPLGQEKALEQILEYELLLIQQL 154 (323)
T ss_dssp HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHH-HGGG-SSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHH-HHHH-hccChhhhHHHHHHHHHHHHHHHHHC
Confidence 344445555554444455677899999999999999986555222221 1111 2223 466766666655544
No 36
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=42.03 E-value=1.2e+02 Score=26.92 Aligned_cols=54 Identities=7% Similarity=-0.007 Sum_probs=37.1
Q ss_pred cccCHHHHHHHHHHHHHccCCCCcchHHHHHHHhc--CCCHHHHHHHHHHHHHHHhc
Q 045125 249 LEFKPSEIAAAVAISVTGETKTVVDTEKAISLLTQ--HVKKERVLKCIKMMNDSLIS 303 (342)
Q Consensus 249 l~~~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~~--~~~~~~l~~C~~~l~~l~~~ 303 (342)
.....-.+|+||+++|.+.....+.--+.+..+ + .|++++|.++-..|.+.+.-
T Consensus 89 ~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i-~~~~~~~~ei~~mE~~IL~~L~~ 144 (283)
T 1w98_B 89 VKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYV-TDGACSGDEILTMELMIMKALKW 144 (283)
T ss_dssp CGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHT-TTTSSCHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH-HcCCCCHHHHHHHHHHHHHHcCC
Confidence 345677889999999998654423223334444 3 48999999998888776643
No 37
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=34.72 E-value=2.2e+02 Score=24.52 Aligned_cols=109 Identities=13% Similarity=0.122 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHhccCc---ccCCchhhHHHHHHHHHHHHhhhccccCCcccceeeccCCcc
Q 045125 103 EAVDWIAKVHSHFGFGPLCSYLTINYLDRFLSAYE---LPKGKVWMMQLLAVACLSLAAKMEETEVPLCLDLQVGQSKFL 179 (342)
Q Consensus 103 ~~vdWi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~---~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~v~~~~~~ 179 (342)
.+.+-|+.++++-+++..++--||.+--+|..... .--.+ .|-+|++|+.||+----. |..+.++.+-+...
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~---q~dVAAAc~miAae~~~~-PiplaE~r~lD~sL- 88 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVER---QPDVAAACLMIAAEEAQQ-PLPLAEVRCLDSSL- 88 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHCTTC-
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccc---cHHHHHHHHHHHHHHcCC-CccHHHHHHHhhhh-
Confidence 45666789999999999999999999999886432 22233 789999999999965444 44455553222222
Q ss_pred ccHHHHHHHHHHHHHHcCCc-----cccCChHHHHHHHHHHcCCC
Q 045125 180 FEAKTIQRMELLVLSTLKWR-----MQAITPFSFLDYFTRKITDD 219 (342)
Q Consensus 180 ~~~~~I~~mE~~IL~~L~w~-----l~~pTp~~Fl~~fl~~~~~~ 219 (342)
..-++.+. .|++.|+-. |...-.-..|.+|+.+++..
T Consensus 89 -~Dvelrr~--Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq 130 (260)
T 3h4c_A 89 -GDVELRRA--DIVRELHLEDSERRLRDTFADNLLVKYILKLGLQ 130 (260)
T ss_dssp -CCHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred -hHHHHHHH--HHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccc
Confidence 22233333 456666532 22222334566777777665
No 38
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=29.65 E-value=3.1e+02 Score=24.80 Aligned_cols=45 Identities=7% Similarity=-0.065 Sum_probs=27.9
Q ss_pred cccCHHHHHHHHHHHHHccCCCCcchHHHHHHHhcCCCHHHHHHHH
Q 045125 249 LEFKPSEIAAAVAISVTGETKTVVDTEKAISLLTQHVKKERVLKCI 294 (342)
Q Consensus 249 l~~~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~~~~~~~~l~~C~ 294 (342)
.....--+-++|+++|.+...+..-+++.+..+ .|++.+++..-=
T Consensus 115 ~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV-gGisl~ELN~LE 159 (293)
T 2pmi_B 115 NSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV-GGVRCHELNILE 159 (293)
T ss_dssp STTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-HTSCHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhccccccChhHhhhc-cCcCHHHHHHHH
Confidence 345566677777888887766644455555555 566655555443
No 39
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=28.63 E-value=1.8e+02 Score=21.66 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=51.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHhccC------cccCCchhhHHHHHHHHHHHHhhhccccCCcccceeeccCCcccc
Q 045125 108 IAKVHSHFGFGPLCSYLTINYLDRFLSAY------ELPKGKVWMMQLLAVACLSLAAKMEETEVPLCLDLQVGQSKFLFE 181 (342)
Q Consensus 108 i~~v~~~~~l~~~T~~lAv~~lDRfLs~~------~~~~~~~~~lqLlavaCL~IAsK~eE~~~p~~~dl~v~~~~~~~~ 181 (342)
+.+++..||+.. ..-.|-.+|++|=..- .++-.+ -....+|+|.|+|.--..+++.+= +.-++ .+
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~----P~f~aaA~~~acr~~K~kVdK~KL--~~~s~--lk 76 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSR----PLFTSAALLSACKILKLKVDKNKM--VATSG--VK 76 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTS----HHHHHHHHHHHHHHTTCCCCHHHH--HHTTC--BC
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccc----cHHHHHHHHHHHHHHccCCCHHHH--HHHHC--CC
Confidence 346788888766 6667789999997543 223333 367889999999998877664432 22222 26
Q ss_pred HHHHHHHHHHHHH
Q 045125 182 AKTIQRMELLVLS 194 (342)
Q Consensus 182 ~~~I~~mE~~IL~ 194 (342)
+.++.+.+..+-+
T Consensus 77 ~~~f~~l~~~~e~ 89 (95)
T 3m03_A 77 KAIFDRLCKQLEK 89 (95)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776665543
No 40
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=24.82 E-value=1.9e+02 Score=22.76 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhccccC
Q 045125 146 MQLLAVACLSLAAKMEETEV 165 (342)
Q Consensus 146 lqLlavaCL~IAsK~eE~~~ 165 (342)
-.|+-++|-++|.++....+
T Consensus 107 ~~Lldl~c~~vA~~ikgkt~ 126 (141)
T 1fs1_B 107 KGLLDVTCKTVANMIKGKTP 126 (141)
T ss_dssp HHHHHHHHHHHHHHHTTCCH
T ss_pred hHHHHHHHHHHHHHHcCCCH
Confidence 35888899999999876543
No 41
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=24.04 E-value=1.3e+02 Score=22.41 Aligned_cols=48 Identities=23% Similarity=0.134 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHccCCCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 045125 252 KPSEIAAAVAISVTGETKTVVDTEKAISLLTQHVKKERVLKCIKMMNDSLI 302 (342)
Q Consensus 252 ~PS~IAaAai~~a~~~~~~~~~w~~~l~~~~~~~~~~~l~~C~~~l~~l~~ 302 (342)
+|-- ++||++.+++.....++-.+ |..+ +++.+.+...-...+.++..
T Consensus 45 ~P~f-~aaA~~~acr~~K~kVdK~K-L~~~-s~lk~~~f~~l~~~~e~~~~ 92 (95)
T 3m03_A 45 RPLF-TSAALLSACKILKLKVDKNK-MVAT-SGVKKAIFDRLCKQLEKIGQ 92 (95)
T ss_dssp SHHH-HHHHHHHHHHHTTCCCCHHH-HHHT-TCBCHHHHHHHHHHHHHHHT
T ss_pred ccHH-HHHHHHHHHHHHccCCCHHH-HHHH-HCCCHHHHHHHHHHHHHHHH
Confidence 3444 56667778877666566544 4445 79999999998888887754
Done!