Query 045129
Match_columns 136
No_of_seqs 106 out of 669
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 10:08:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02519 Auxin_inducible: Auxi 100.0 2.6E-36 5.7E-41 218.7 8.3 96 1-96 1-100 (100)
2 PLN03090 auxin-responsive fami 100.0 1.6E-34 3.4E-39 211.6 7.9 67 29-95 36-103 (104)
3 PLN03219 uncharacterized prote 100.0 4.4E-32 9.6E-37 199.7 8.8 89 3-95 13-105 (108)
4 PLN03220 uncharacterized prote 100.0 1.2E-31 2.6E-36 196.6 7.2 67 27-93 29-101 (105)
5 PF02214 BTB_2: BTB/POZ domain 87.1 0.69 1.5E-05 31.6 2.9 54 45-98 7-63 (94)
6 PRK02899 adaptor protein; Prov 86.5 0.5 1.1E-05 37.8 2.2 25 57-81 38-62 (197)
7 PRK02315 adaptor protein; Prov 82.4 0.9 2E-05 37.1 2.0 25 57-81 38-62 (233)
8 PF05389 MecA: Negative regula 78.8 0.64 1.4E-05 37.1 0.0 25 57-81 38-62 (220)
9 cd05992 PB1 The PB1 domain is 77.2 16 0.00034 23.9 6.4 53 41-97 7-70 (81)
10 PF00651 BTB: BTB/POZ domain; 70.9 16 0.00035 24.5 5.4 57 38-98 13-74 (111)
11 smart00666 PB1 PB1 domain. Pho 70.2 9 0.0002 25.2 3.9 52 41-97 8-70 (81)
12 cd06407 PB1_NLP A PB1 domain i 51.9 27 0.00059 24.2 3.8 49 39-91 5-65 (82)
13 PF14317 YcxB: YcxB-like prote 51.3 24 0.00051 21.3 3.1 33 33-65 27-59 (62)
14 PF11822 DUF3342: Domain of un 47.3 36 0.00077 29.7 4.6 52 45-99 13-69 (317)
15 PF00564 PB1: PB1 domain; Int 45.8 73 0.0016 20.7 5.1 50 43-97 10-71 (84)
16 cd06397 PB1_UP1 Uncharacterize 45.4 72 0.0016 22.8 5.1 52 41-97 7-69 (82)
17 PF02209 VHP: Villin headpiece 45.1 13 0.00027 22.6 1.1 19 54-72 1-19 (36)
18 cd06396 PB1_NBR1 The PB1 domai 45.0 1E+02 0.0022 21.8 5.8 56 39-97 5-69 (81)
19 smart00153 VHP Villin headpiec 40.7 18 0.00039 21.8 1.3 18 54-71 1-18 (36)
20 PF08948 DUF1859: Domain of un 40.5 13 0.00029 28.0 0.9 28 34-61 86-123 (126)
21 PF12058 DUF3539: Protein of u 40.1 7.2 0.00016 28.2 -0.6 14 53-66 4-17 (88)
22 COG1759 5-formaminoimidazole-4 34.9 20 0.00044 31.7 1.2 77 30-108 87-198 (361)
23 COG4862 MecA Negative regulato 34.5 26 0.00056 29.3 1.7 27 56-82 37-63 (224)
24 PF06849 DUF1246: Protein of u 33.8 2.3 5E-05 32.4 -4.2 23 30-52 67-92 (124)
25 cd06398 PB1_Joka2 The PB1 doma 31.3 91 0.002 22.1 3.9 53 41-93 7-72 (91)
26 cd04395 RhoGAP_ARHGAP21 RhoGAP 31.2 1E+02 0.0022 23.9 4.5 42 58-99 19-60 (196)
27 PF11834 DUF3354: Domain of un 30.5 35 0.00075 23.3 1.6 23 46-74 20-42 (69)
28 KOG4407 Predicted Rho GTPase-a 30.4 1.4E+02 0.0031 31.5 6.3 60 31-98 1151-1215(1973)
29 cd04751 Commd3 COMM_Domain con 30.2 47 0.001 23.5 2.3 30 76-106 64-93 (95)
30 PRK13277 5-formaminoimidazole- 28.2 28 0.0006 30.9 0.9 26 30-57 87-115 (366)
31 cd04404 RhoGAP-p50rhoGAP RhoGA 25.7 1.2E+02 0.0026 23.4 4.1 41 60-101 27-67 (195)
32 cd06401 PB1_TFG The PB1 domain 25.1 1.3E+02 0.0029 21.3 3.8 31 39-72 5-35 (81)
33 PF07429 Glyco_transf_56: 4-al 25.0 1.1E+02 0.0024 27.2 4.1 63 32-97 180-265 (360)
34 TIGR02527 dot_icm_IcmQ Dot/Icm 24.1 42 0.0009 27.2 1.2 43 2-44 78-126 (182)
35 PF02100 ODC_AZ: Ornithine dec 22.1 54 0.0012 23.9 1.4 32 44-75 23-58 (108)
36 cd06404 PB1_aPKC PB1 domain is 21.9 1.8E+02 0.0039 20.8 3.9 38 40-81 6-43 (83)
37 PF05194 UreE_C: UreE urease a 21.7 1.1E+02 0.0024 20.9 2.8 30 33-67 22-51 (87)
38 PRK10308 3-methyl-adenine DNA 20.8 2.7E+02 0.0059 23.3 5.5 61 35-95 45-121 (283)
39 PRK02797 4-alpha-L-fucosyltran 20.2 1.9E+02 0.0041 25.4 4.5 63 32-97 141-226 (322)
40 cd06410 PB1_UP2 Uncharacterize 20.1 2E+02 0.0043 20.6 4.0 33 39-75 17-50 (97)
No 1
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=2.6e-36 Score=218.72 Aligned_cols=96 Identities=33% Similarity=0.647 Sum_probs=79.3
Q ss_pred ChhhhHHhhhcccCccccCCccC---CCCCCccccccCCcEEEEecc-CeeeeecccccCchhhHHHHhhhhhhhccCCC
Q 045129 1 MASKWEIFAVIKRKGISLPNNEA---GLVNGTAQLAYKGHFVVYTTD-QARFLIPLEYLSKRIFREPLKLSEVEFGLEID 76 (136)
Q Consensus 1 makkWqk~aa~~rkr~s~~~~~~---~~~~~~~~~vpkG~~~VyVGe-~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~~~ 76 (136)
|++||++.+..++.......... ..+.++..++|+||||||||+ ++||+||++|||||+|++||++|||||||+++
T Consensus 1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~ 80 (100)
T PF02519_consen 1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQD 80 (100)
T ss_pred CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCC
Confidence 88999988777655333222111 111222478999999999997 99999999999999999999999999999999
Q ss_pred CCeeecCCHHHHHHHHHHHh
Q 045129 77 GPITLPCDASFMEYVILFLQ 96 (136)
Q Consensus 77 G~L~iPCd~~~Fe~vl~~i~ 96 (136)
|+|+||||+++|++++|+|+
T Consensus 81 G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 81 GPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred CcEEeeCCHHHHHHHHHHhC
Confidence 99999999999999999985
No 2
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=211.64 Aligned_cols=67 Identities=28% Similarity=0.626 Sum_probs=64.6
Q ss_pred ccccccCCcEEEEecc-CeeeeecccccCchhhHHHHhhhhhhhccCCCCCeeecCCHHHHHHHHHHH
Q 045129 29 TAQLAYKGHFVVYTTD-QARFLIPLEYLSKRIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFL 95 (136)
Q Consensus 29 ~~~~vpkG~~~VyVGe-~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~~~G~L~iPCd~~~Fe~vl~~i 95 (136)
.+.+|||||||||||+ ++||+||++|||||+|++||++|||||||+++|+|+||||+++|++++|+|
T Consensus 36 ~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 36 LPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI 103 (104)
T ss_pred CCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence 4678999999999997 689999999999999999999999999999999999999999999999998
No 3
>PLN03219 uncharacterized protein; Provisional
Probab=99.97 E-value=4.4e-32 Score=199.72 Aligned_cols=89 Identities=30% Similarity=0.528 Sum_probs=74.0
Q ss_pred hhhHHhhhcccCccccCCccCCCCCCccccccCCcEEEEecc---CeeeeecccccCchhhHHHHhhhhhhhccCC-CCC
Q 045129 3 SKWEIFAVIKRKGISLPNNEAGLVNGTAQLAYKGHFVVYTTD---QARFLIPLEYLSKRIFREPLKLSEVEFGLEI-DGP 78 (136)
Q Consensus 3 kkWqk~aa~~rkr~s~~~~~~~~~~~~~~~vpkG~~~VyVGe---~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~~-~G~ 78 (136)
+-||.+...+|+..+-+.. +++++.+|||||||||||+ ++||+||++|||||+|++||++|||||||++ +|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~----~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~ 88 (108)
T PLN03219 13 QIFKSQSMRNKNGSSSPSS----STTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGG 88 (108)
T ss_pred HHHHHHHHhcccCCCCCcc----CCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCC
Confidence 4577666666665442222 2345689999999999996 7999999999999999999999999999997 699
Q ss_pred eeecCCHHHHHHHHHHH
Q 045129 79 ITLPCDASFMEYVILFL 95 (136)
Q Consensus 79 L~iPCd~~~Fe~vl~~i 95 (136)
|+||||++.|++++..-
T Consensus 89 L~IPCd~~~F~~ll~~~ 105 (108)
T PLN03219 89 LTIPCREESFLHLITSH 105 (108)
T ss_pred EEEeCCHHHHHHHHHhh
Confidence 99999999999998653
No 4
>PLN03220 uncharacterized protein; Provisional
Probab=99.97 E-value=1.2e-31 Score=196.56 Aligned_cols=67 Identities=31% Similarity=0.631 Sum_probs=62.7
Q ss_pred CCccccccCCcEEEEecc-----CeeeeecccccCchhhHHHHhhhhhhhccCC-CCCeeecCCHHHHHHHHH
Q 045129 27 NGTAQLAYKGHFVVYTTD-----QARFLIPLEYLSKRIFREPLKLSEVEFGLEI-DGPITLPCDASFMEYVIL 93 (136)
Q Consensus 27 ~~~~~~vpkG~~~VyVGe-----~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~~-~G~L~iPCd~~~Fe~vl~ 93 (136)
++++.+|||||||||||+ ++||+||++|||||+|++||++|||||||++ +|+|+||||++.|++++.
T Consensus 29 ~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~ 101 (105)
T PLN03220 29 SSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA 101 (105)
T ss_pred ccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence 445789999999999996 6999999999999999999999999999998 699999999999999984
No 5
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=87.08 E-value=0.69 Score=31.57 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=41.5
Q ss_pred CeeeeecccccC-c--hhhHHHHhhhhhhhccCCCCCeeecCCHHHHHHHHHHHhcC
Q 045129 45 QARFLIPLEYLS-K--RIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRG 98 (136)
Q Consensus 45 ~~RFvVp~~yLn-h--p~F~~LL~~aeeEfG~~~~G~L~iPCd~~~Fe~vl~~i~~~ 98 (136)
+++|.++.+.|. + ..|..++........-+.+|.+-|-+|...|++|+..++.+
T Consensus 7 G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~ 63 (94)
T PF02214_consen 7 GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG 63 (94)
T ss_dssp TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence 678888888877 4 47888888653333334579999999999999999999984
No 6
>PRK02899 adaptor protein; Provisional
Probab=86.52 E-value=0.5 Score=37.84 Aligned_cols=25 Identities=36% Similarity=0.813 Sum_probs=21.9
Q ss_pred chhhHHHHhhhhhhhccCCCCCeee
Q 045129 57 KRIFREPLKLSEVEFGLEIDGPITL 81 (136)
Q Consensus 57 hp~F~~LL~~aeeEfG~~~~G~L~i 81 (136)
+-+|.++|++|..|+||..+|||+|
T Consensus 38 e~lF~~mm~Ea~~e~~F~~~~pl~~ 62 (197)
T PRK02899 38 HQLFRDMMQEANKELGFEADGPIAV 62 (197)
T ss_pred HHHHHHHHHHhhhccCcccCCeEEE
Confidence 4578888999999999999999963
No 7
>PRK02315 adaptor protein; Provisional
Probab=82.42 E-value=0.9 Score=37.13 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=22.6
Q ss_pred chhhHHHHhhhhhhhccCCCCCeee
Q 045129 57 KRIFREPLKLSEVEFGLEIDGPITL 81 (136)
Q Consensus 57 hp~F~~LL~~aeeEfG~~~~G~L~i 81 (136)
+-+|.++|+++..|+||..+|||+|
T Consensus 38 e~fF~~mm~Ea~~e~~F~~~~pl~~ 62 (233)
T PRK02315 38 EEFFYSMMDEVDEEDDFADEGPLWF 62 (233)
T ss_pred HHHHHHHHHHhccccCcccCCeEEE
Confidence 4689999999999999999999964
No 8
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=78.81 E-value=0.64 Score=37.10 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=0.0
Q ss_pred chhhHHHHhhhhhhhccCCCCCeee
Q 045129 57 KRIFREPLKLSEVEFGLEIDGPITL 81 (136)
Q Consensus 57 hp~F~~LL~~aeeEfG~~~~G~L~i 81 (136)
+-+|.++|++|.+|+||..+|||++
T Consensus 38 e~fF~~ileea~~e~~F~~~~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFENDGPLTF 62 (220)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHhccccCcccCCeEEE
Confidence 5789999999999999999999975
No 9
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=77.15 E-value=16 Score=23.87 Aligned_cols=53 Identities=26% Similarity=0.370 Sum_probs=39.4
Q ss_pred EeccCeeeeecccccCchhhHHHHhhhhhhhccC----------CCCCe-eecCCHHHHHHHHHHHhc
Q 045129 41 YTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLE----------IDGPI-TLPCDASFMEYVILFLQR 97 (136)
Q Consensus 41 yVGe~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~----------~~G~L-~iPCd~~~Fe~vl~~i~~ 97 (136)
|-|+.+||.+|- .++.|.+|..+..+.|++. .+|-+ +|-++ +.|+.++....+
T Consensus 7 ~~~~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~~~ 70 (81)
T cd05992 7 YGGEIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEARR 70 (81)
T ss_pred ecCCCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHHhh
Confidence 446889999997 8899999999999999885 24544 45454 577777777654
No 10
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=70.92 E-value=16 Score=24.48 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=41.2
Q ss_pred EEEEeccCeeeeeccccc--CchhhHHHHhhhhhhhccCCCC--Ceeec-CCHHHHHHHHHHHhcC
Q 045129 38 FVVYTTDQARFLIPLEYL--SKRIFREPLKLSEVEFGLEIDG--PITLP-CDASFMEYVILFLQRG 98 (136)
Q Consensus 38 ~~VyVGe~~RFvVp~~yL--nhp~F~~LL~~aeeEfG~~~~G--~L~iP-Cd~~~Fe~vl~~i~~~ 98 (136)
+.+.||++++|-+.-..| ..|.|+.+++.. +....+ .+.++ ++...|+.++..+-.+
T Consensus 13 ~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~ 74 (111)
T PF00651_consen 13 VTIRVGDGKTFYVHKNILAARSPYFRNLFEGS----KFKESTVPEISLPDVSPEAFEAFLEYMYTG 74 (111)
T ss_dssp EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTT----TSTTSSEEEEEETTSCHHHHHHHHHHHHHS
T ss_pred EEEEECCCEEEeechhhhhccchhhhhccccc----ccccccccccccccccccccccccccccCC
Confidence 345566688888888777 569999999988 212233 45555 8899999999998755
No 11
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=70.20 E-value=9 Score=25.25 Aligned_cols=52 Identities=25% Similarity=0.359 Sum_probs=37.9
Q ss_pred EeccCeeeeecccccCchhhHHHHhhhhhhhccC----------CCC-CeeecCCHHHHHHHHHHHhc
Q 045129 41 YTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLE----------IDG-PITLPCDASFMEYVILFLQR 97 (136)
Q Consensus 41 yVGe~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~----------~~G-~L~iPCd~~~Fe~vl~~i~~ 97 (136)
|-|+.+||.+|- ...|.+|..+..+.|+.. .+| .++|.++. .++.++.+...
T Consensus 8 ~~~~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~~~~~~ 70 (81)
T smart00666 8 YGGETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAIEEYDS 70 (81)
T ss_pred ECCEEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHHHHHHH
Confidence 445789999985 788999999999999874 245 56788865 56666666553
No 12
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=51.85 E-value=27 Score=24.21 Aligned_cols=49 Identities=27% Similarity=0.411 Sum_probs=34.2
Q ss_pred EEEeccCeeeeecccccCchhhHHHHhhhhhhhccCC------------CCCeeecCCHHHHHHH
Q 045129 39 VVYTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLEI------------DGPITLPCDASFMEYV 91 (136)
Q Consensus 39 ~VyVGe~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~~------------~G~L~iPCd~~~Fe~v 91 (136)
+.|-||..||-+|. ..-|.+|.++-.+-|+++. +.++.|-||.++=|.+
T Consensus 5 ~~~~~d~~r~~l~~----~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai 65 (82)
T cd06407 5 ATYGEEKIRFRLPP----SWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECI 65 (82)
T ss_pred EEeCCeEEEEEcCC----CCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHH
Confidence 34556789999885 3469999999988887643 2445677887665543
No 13
>PF14317 YcxB: YcxB-like protein
Probab=51.33 E-value=24 Score=21.29 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=25.8
Q ss_pred ccCCcEEEEeccCeeeeecccccCchhhHHHHh
Q 045129 33 AYKGHFVVYTTDQARFLIPLEYLSKRIFREPLK 65 (136)
Q Consensus 33 vpkG~~~VyVGe~~RFvVp~~yLnhp~F~~LL~ 65 (136)
.-+.++-+|+++..-++||-+.++.-...++.+
T Consensus 27 e~~~~~~l~~~~~~~~~iPk~~f~~~e~~~f~~ 59 (62)
T PF14317_consen 27 ETKDYFYLYLGKNQAFIIPKRAFSEEEKEEFRE 59 (62)
T ss_pred EeCCEEEEEECCCeEEEEEHHHCCHhHHHHHHH
Confidence 456788889999999999999998555555544
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=47.29 E-value=36 Score=29.71 Aligned_cols=52 Identities=21% Similarity=0.420 Sum_probs=40.2
Q ss_pred CeeeeecccccC--chhhHHHHhh---hhhhhccCCCCCeeecCCHHHHHHHHHHHhcCC
Q 045129 45 QARFLIPLEYLS--KRIFREPLKL---SEVEFGLEIDGPITLPCDASFMEYVILFLQRGG 99 (136)
Q Consensus 45 ~~RFvVp~~yLn--hp~F~~LL~~---aeeEfG~~~~G~L~iPCd~~~Fe~vl~~i~~~~ 99 (136)
.+=|..|...|- ...|++.|.. ..++. .+=.|.+-||+..|+.++..+++..
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~---~~idisVhCDv~iF~WLm~yv~~~~ 69 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRW---EEIDISVHCDVHIFEWLMRYVKGEP 69 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcC---CCcceEEecChhHHHHHHHHhhcCC
Confidence 577999998884 5779999965 33332 2356889999999999999998843
No 15
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=45.77 E-value=73 Score=20.75 Aligned_cols=50 Identities=26% Similarity=0.318 Sum_probs=32.5
Q ss_pred ccCee-eeecccccCchhhHHHHhhhhhhhccC----------CCCCe-eecCCHHHHHHHHHHHhc
Q 045129 43 TDQAR-FLIPLEYLSKRIFREPLKLSEVEFGLE----------IDGPI-TLPCDASFMEYVILFLQR 97 (136)
Q Consensus 43 Ge~~R-FvVp~~yLnhp~F~~LL~~aeeEfG~~----------~~G~L-~iPCd~~~Fe~vl~~i~~ 97 (136)
|+.+| +.+| ..+.|.+|..+.++.||.. .+|-+ +|.++. .|+..+....+
T Consensus 10 ~~~~~~~~~~----~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~-Dl~~a~~~~~~ 71 (84)
T PF00564_consen 10 GDIRRIISLP----SDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDE-DLQEAIEQAKE 71 (84)
T ss_dssp TEEEEEEEEC----STSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHH-HHHHHHHHHHH
T ss_pred CeeEEEEEcC----CCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHH-HHHHHHHHHHh
Confidence 45555 4443 5679999999999999983 45644 555554 45555555543
No 16
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=45.44 E-value=72 Score=22.82 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=36.1
Q ss_pred EeccCeeeeecccccCchhhHHHHhhhhhhhccC----------CC-CCeeecCCHHHHHHHHHHHhc
Q 045129 41 YTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLE----------ID-GPITLPCDASFMEYVILFLQR 97 (136)
Q Consensus 41 yVGe~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~----------~~-G~L~iPCd~~~Fe~vl~~i~~ 97 (136)
|-|+.+||..|. -|.+.+|-++.+.=|-+. .| ..|+|.=+.++.+ +.....+
T Consensus 7 ~~g~~RRf~~~~----~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d-~~~~~~~ 69 (82)
T cd06397 7 FLGDTRRIVFPD----IPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQD-FYRLSHR 69 (82)
T ss_pred eCCceEEEecCC----CccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHH-HHHhccc
Confidence 457899999998 899999999998877665 24 3556665555444 4444433
No 17
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=45.11 E-value=13 Score=22.57 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=15.4
Q ss_pred ccCchhhHHHHhhhhhhhc
Q 045129 54 YLSKRIFREPLKLSEVEFG 72 (136)
Q Consensus 54 yLnhp~F~~LL~~aeeEfG 72 (136)
||+...|.+++.++.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7899999999999999983
No 18
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=44.97 E-value=1e+02 Score=21.78 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=39.5
Q ss_pred EEEeccCeeeeecccccCchhhHHHHhhhhhhhccC---------CCCCeeecCCHHHHHHHHHHHhc
Q 045129 39 VVYTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLE---------IDGPITLPCDASFMEYVILFLQR 97 (136)
Q Consensus 39 ~VyVGe~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~---------~~G~L~iPCd~~~Fe~vl~~i~~ 97 (136)
+-|-||..||.++- -.++.|.+|..+.+.-|+++ .+-+++|.|++++=| .+.+.++
T Consensus 5 aty~~d~~rf~~~~--~~~~~~~~L~~ev~~rf~l~~f~lKYlDde~e~v~lssd~eLeE-~~rl~~~ 69 (81)
T cd06396 5 VTYNGESQSFLVSD--SENTTWASVEAMVKVSFGLNDIQIKYVDEENEEVSVNSQGEYEE-ALKSAVR 69 (81)
T ss_pred EEECCeEEEEEecC--CCCCCHHHHHHHHHHHhCCCcceeEEEcCCCCEEEEEchhhHHH-HHHHHHh
Confidence 34567899999883 22568999999999999865 235778999876544 4444444
No 19
>smart00153 VHP Villin headpiece domain.
Probab=40.75 E-value=18 Score=21.81 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=16.7
Q ss_pred ccCchhhHHHHhhhhhhh
Q 045129 54 YLSKRIFREPLKLSEVEF 71 (136)
Q Consensus 54 yLnhp~F~~LL~~aeeEf 71 (136)
||+.-.|+.++.++.+||
T Consensus 1 yLsdeeF~~vfgmsr~eF 18 (36)
T smart00153 1 YLSDEDFEEVFGMTREEF 18 (36)
T ss_pred CCCHHHHHHHHCCCHHHH
Confidence 789999999999999998
No 20
>PF08948 DUF1859: Domain of unknown function (DUF1859); InterPro: IPR015043 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the N terminus of bacteriophage spike proteins []. ; PDB: 1W8X_N.
Probab=40.54 E-value=13 Score=28.03 Aligned_cols=28 Identities=25% Similarity=0.545 Sum_probs=9.0
Q ss_pred cCCcEEEEeccCeeee----------ecccccCchhhH
Q 045129 34 YKGHFVVYTTDQARFL----------IPLEYLSKRIFR 61 (136)
Q Consensus 34 pkG~~~VyVGe~~RFv----------Vp~~yLnhp~F~ 61 (136)
..|+||+.|-.+.+|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T PF08948_consen 86 KQGYFPLLVPGRAKFVVRHTGSGKKSVPMFFLNFTIAQ 123 (126)
T ss_dssp --SS--EEE--SSSSEEEEEEEESS----S--------
T ss_pred CcccceeeccchhhhhhhhccCCCcceeeEEEeceeee
Confidence 5799999997766666 688888887643
No 21
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=40.11 E-value=7.2 Score=28.22 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=10.2
Q ss_pred cccCchhhHHHHhh
Q 045129 53 EYLSKRIFREPLKL 66 (136)
Q Consensus 53 ~yLnhp~F~~LL~~ 66 (136)
.|||||.|.-|-.-
T Consensus 4 ~YLNHPtFGlLy~V 17 (88)
T PF12058_consen 4 TYLNHPTFGLLYRV 17 (88)
T ss_dssp -EEEETTTEEEEEE
T ss_pred ccccCCccchheee
Confidence 59999999776543
No 22
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=34.89 E-value=20 Score=31.75 Aligned_cols=77 Identities=21% Similarity=0.372 Sum_probs=44.4
Q ss_pred cccccCCcEEEEec-c--CeeeeecccccCc----------hhhHHHHhhhhh----hhcc--CCCCCe-----------
Q 045129 30 AQLAYKGHFVVYTT-D--QARFLIPLEYLSK----------RIFREPLKLSEV----EFGL--EIDGPI----------- 79 (136)
Q Consensus 30 ~~~vpkG~~~VyVG-e--~~RFvVp~~yLnh----------p~F~~LL~~aee----EfG~--~~~G~L----------- 79 (136)
..-+|.|.|++||| | -..|.||+ +++ -.-..||++|.= .|-= +.||+.
T Consensus 87 ~I~IP~gSfv~Y~G~d~ie~~~~vP~--fGnR~lLrwE~~~~~~~~lLekAgi~~P~~~~~PeeIdr~VIVK~pgAkggR 164 (361)
T COG1759 87 AIFIPHGSFVAYVGYDGIENEFEVPM--FGNRELLRWEEDRKLEYKLLEKAGLRIPKKYKSPEEIDRPVIVKLPGAKGGR 164 (361)
T ss_pred eEEecCCceEEEecchhhhhcccCcc--cccHhHhhhhcchhhHHHHHHHcCCCCCcccCChHHcCCceEEecCCccCCc
Confidence 46799999999999 4 36677773 332 233578887731 2210 123333
Q ss_pred --eecCCHHHHHH-HHHHHhcCCc--hhHHHHHH
Q 045129 80 --TLPCDASFMEY-VILFLQRGGD--KNVETFLL 108 (136)
Q Consensus 80 --~iPCd~~~Fe~-vl~~i~~~~~--~~~~~~~l 108 (136)
-+.=+-..|.. +-.+++++.- .|++.|-+
T Consensus 165 GyFiA~s~eef~ek~e~l~~~gvi~~edlkna~I 198 (361)
T COG1759 165 GYFIASSPEEFYEKAERLLKRGVITEEDLKNARI 198 (361)
T ss_pred eEEEEcCHHHHHHHHHHHHHcCCcchhhhhhcee
Confidence 34455566654 4466666543 66666544
No 23
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=34.54 E-value=26 Score=29.26 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=24.3
Q ss_pred CchhhHHHHhhhhhhhccCCCCCeeec
Q 045129 56 SKRIFREPLKLSEVEFGLEIDGPITLP 82 (136)
Q Consensus 56 nhp~F~~LL~~aeeEfG~~~~G~L~iP 82 (136)
.|-+|.++++++.+|-+|..+|||.|-
T Consensus 37 ~EE~F~~mMdEl~~ee~F~~~GpL~iq 63 (224)
T COG4862 37 TEELFYEMMDELNLEEDFKDEGPLWIQ 63 (224)
T ss_pred HHHHHHHHHHhcCCccccccCCceEEE
Confidence 478999999999999999999999863
No 24
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=33.83 E-value=2.3 Score=32.43 Aligned_cols=23 Identities=35% Similarity=0.704 Sum_probs=13.7
Q ss_pred cccccCCcEEEEec-c--Ceeeeecc
Q 045129 30 AQLAYKGHFVVYTT-D--QARFLIPL 52 (136)
Q Consensus 30 ~~~vpkG~~~VyVG-e--~~RFvVp~ 52 (136)
..-||.|-|++|+| | .++|.||+
T Consensus 67 ~I~VPhgSfv~Y~G~d~ie~~~~vP~ 92 (124)
T PF06849_consen 67 AIFVPHGSFVAYVGYDRIENEFKVPI 92 (124)
T ss_dssp EEE--BTTHHHHH-HHHHHHT-SS-E
T ss_pred eEEecCCCeeEeecHHHHhhcCCCCe
Confidence 46799999999999 4 35577773
No 25
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=31.26 E-value=91 Score=22.07 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=35.3
Q ss_pred EeccCeeeeecccc-cCchhhHHHHhhhhhhhccCC-----------CCC-eeecCCHHHHHHHHH
Q 045129 41 YTTDQARFLIPLEY-LSKRIFREPLKLSEVEFGLEI-----------DGP-ITLPCDASFMEYVIL 93 (136)
Q Consensus 41 yVGe~~RFvVp~~y-Lnhp~F~~LL~~aeeEfG~~~-----------~G~-L~iPCd~~~Fe~vl~ 93 (136)
|=|+-+||-+|.+= -.+.-|..|.++-++-|.... +|- ++|-||.++-+-+-.
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~ 72 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQY 72 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHH
Confidence 33578999999640 114578888888888776653 344 468888776665543
No 26
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=31.19 E-value=1e+02 Score=23.89 Aligned_cols=42 Identities=24% Similarity=0.199 Sum_probs=34.9
Q ss_pred hhhHHHHhhhhhhhccCCCCCeeecCCHHHHHHHHHHHhcCC
Q 045129 58 RIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGG 99 (136)
Q Consensus 58 p~F~~LL~~aeeEfG~~~~G~L~iPCd~~~Fe~vl~~i~~~~ 99 (136)
|.|.+..-..-++.|.+.+|--++|.+...-+.+...++++.
T Consensus 19 P~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~ 60 (196)
T cd04395 19 PLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGG 60 (196)
T ss_pred ChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCC
Confidence 555555555667889999999999999999999999999875
No 27
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=30.45 E-value=35 Score=23.29 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=18.9
Q ss_pred eeeeecccccCchhhHHHHhhhhhhhccC
Q 045129 46 ARFLIPLEYLSKRIFREPLKLSEVEFGLE 74 (136)
Q Consensus 46 ~RFvVp~~yLnhp~F~~LL~~aeeEfG~~ 74 (136)
+=+.+| -.+.+||+.|++.||+.
T Consensus 20 Kvi~lP------~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 20 KVIWLP------DSLEELLKIASEKFGFS 42 (69)
T ss_pred EEEEcC------ccHHHHHHHHHHHhCCC
Confidence 445566 57999999999999995
No 28
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=30.42 E-value=1.4e+02 Score=31.53 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=46.5
Q ss_pred ccccCCcEEEEecc-----CeeeeecccccCchhhHHHHhhhhhhhccCCCCCeeecCCHHHHHHHHHHHhcC
Q 045129 31 QLAYKGHFVVYTTD-----QARFLIPLEYLSKRIFREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRG 98 (136)
Q Consensus 31 ~~vpkG~~~VyVGe-----~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~~~G~L~iPCd~~~Fe~vl~~i~~~ 98 (136)
...|-|.|=|-.-| -.||| |++.+.--..-|+||++--|.-+||=.-...-.+-..+.+.
T Consensus 1151 a~~~~~~~GVrl~dCP~~~~n~yV--------P~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~ 1215 (1973)
T KOG4407|consen 1151 AGAPQPVLGVRLADCPTGSCNDYV--------PMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNR 1215 (1973)
T ss_pred ccCcCcccccccccCCcccccccc--------hHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhcc
Confidence 34566666666543 46665 88888888899999999999999999988877777777665
No 29
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=30.16 E-value=47 Score=23.47 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=23.2
Q ss_pred CCCeeecCCHHHHHHHHHHHhcCCchhHHHH
Q 045129 76 DGPITLPCDASFMEYVILFLQRGGDKNVETF 106 (136)
Q Consensus 76 ~G~L~iPCd~~~Fe~vl~~i~~~~~~~~~~~ 106 (136)
..++.+-|+++.|.+++.-|+ +..+.+|++
T Consensus 64 ~~~i~f~c~~e~L~~Li~~Lk-~A~~~~e~~ 93 (95)
T cd04751 64 KPDINFTCTLEQLQDLVNKLK-DAAKNIERA 93 (95)
T ss_pred cceEEEEeCHHHHHHHHHHHH-HHHHHHHHh
Confidence 458999999999999999995 334555543
No 30
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=28.15 E-value=28 Score=30.88 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=19.8
Q ss_pred cccccCCcEEEEec-c--CeeeeecccccCc
Q 045129 30 AQLAYKGHFVVYTT-D--QARFLIPLEYLSK 57 (136)
Q Consensus 30 ~~~vpkG~~~VyVG-e--~~RFvVp~~yLnh 57 (136)
...||.|-|++||| | ...|-|| ++++
T Consensus 87 ~i~iPh~sf~~y~g~~~ie~~~~vp--~fGn 115 (366)
T PRK13277 87 AIFVPNRSFAVYVGYDAIENEFKVP--IFGN 115 (366)
T ss_pred eEEecCCCeEEEecHHHHhhcCCCC--cccC
Confidence 46799999999999 4 2478888 4444
No 31
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=25.67 E-value=1.2e+02 Score=23.36 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=32.8
Q ss_pred hHHHHhhhhhhhccCCCCCeeecCCHHHHHHHHHHHhcCCch
Q 045129 60 FREPLKLSEVEFGLEIDGPITLPCDASFMEYVILFLQRGGDK 101 (136)
Q Consensus 60 F~~LL~~aeeEfG~~~~G~L~iPCd~~~Fe~vl~~i~~~~~~ 101 (136)
+..+++-.++ .|.+.+|--+++-+....+.+...++++..-
T Consensus 27 l~~~i~~l~~-~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~ 67 (195)
T cd04404 27 VRETVEYLQA-HALTTEGIFRRSANTQVVKEVQQKYNMGEPV 67 (195)
T ss_pred HHHHHHHHHH-cCCCCCCeeeCCCcHHHHHHHHHHHhCCCCC
Confidence 3455555544 7999999999999999999999999886543
No 32
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=25.08 E-value=1.3e+02 Score=21.32 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=20.9
Q ss_pred EEEeccCeeeeecccccCchhhHHHHhhhhhhhc
Q 045129 39 VVYTTDQARFLIPLEYLSKRIFREPLKLSEVEFG 72 (136)
Q Consensus 39 ~VyVGe~~RFvVp~~yLnhp~F~~LL~~aeeEfG 72 (136)
+||-||-+||-+|.. .=.|.+|.++....|.
T Consensus 5 ~~~g~DiR~~~~~~~---~~t~~~L~~~v~~~F~ 35 (81)
T cd06401 5 AQLGDDIRRIPIHNE---DITYDELLLMMQRVFR 35 (81)
T ss_pred EEeCCeEEEEeccCc---cccHHHHHHHHHHHhc
Confidence 355567788777642 1268888888887776
No 33
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=24.99 E-value=1.1e+02 Score=27.23 Aligned_cols=63 Identities=16% Similarity=0.342 Sum_probs=43.0
Q ss_pred cccCCcEEEEec---------------------cCeeeeeccccc--CchhhHHHHhhhhhhhccCCCCCeeecCCHHHH
Q 045129 32 LAYKGHFVVYTT---------------------DQARFLIPLEYL--SKRIFREPLKLSEVEFGLEIDGPITLPCDASFM 88 (136)
Q Consensus 32 ~vpkG~~~VyVG---------------------e~~RFvVp~~yL--nhp~F~~LL~~aeeEfG~~~~G~L~iPCd~~~F 88 (136)
..++|-+.|.|| +..|++||++|= |.....++.+.+++-||- +-+.+-=+---|
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~---~~~~iL~e~mpf 256 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGA---ENFQILTEFMPF 256 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCc---cceeEhhhhCCH
Confidence 345677888876 248999999996 456777777778878874 334444445556
Q ss_pred HHHHHHHhc
Q 045129 89 EYVILFLQR 97 (136)
Q Consensus 89 e~vl~~i~~ 97 (136)
+..+.+|++
T Consensus 257 ~eYl~lL~~ 265 (360)
T PF07429_consen 257 DEYLALLSR 265 (360)
T ss_pred HHHHHHHHh
Confidence 677776654
No 34
>TIGR02527 dot_icm_IcmQ Dot/Icm secretion system protein IcmQ. Members of this protein family are the IcmQ component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This protein was shown to be essential for translocation (PubMed:15661013).
Probab=24.05 E-value=42 Score=27.23 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=28.0
Q ss_pred hhhhHH-hhhcccCccccCCccCCCC-----CCccccccCCcEEEEecc
Q 045129 2 ASKWEI-FAVIKRKGISLPNNEAGLV-----NGTAQLAYKGHFVVYTTD 44 (136)
Q Consensus 2 akkWqk-~aa~~rkr~s~~~~~~~~~-----~~~~~~vpkG~~~VyVGe 44 (136)
.++|++ +|++-|--+|.|==.++.| -+....+.+.||+|||-.
T Consensus 78 lqsWerilanLprqmisRPIYanE~dvk~~IksKenk~NEAYVaiyI~q 126 (182)
T TIGR02527 78 LKQWAKILASLERQMIGRPIYADEADAKAAIKQKENKLNEACVAIAIDQ 126 (182)
T ss_pred HHHHHHHHHhChhhhhCCCCcCCHHHHHHHHHhhhccccceEEEEEEch
Confidence 368997 6777776666443223333 123467899999999964
No 35
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=22.11 E-value=54 Score=23.85 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=17.6
Q ss_pred cCeeee-ecccc---cCchhhHHHHhhhhhhhccCC
Q 045129 44 DQARFL-IPLEY---LSKRIFREPLKLSEVEFGLEI 75 (136)
Q Consensus 44 e~~RFv-Vp~~y---Lnhp~F~~LL~~aeeEfG~~~ 75 (136)
++.=|| +|-.. ..-.-|..||+.|||.+|.++
T Consensus 23 ~~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~ 58 (108)
T PF02100_consen 23 ERTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH 58 (108)
T ss_dssp TTEEEEE-SS---SS--SHHHHHHHHHHHHHH----
T ss_pred CCEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE
Confidence 344455 45433 345789999999999998654
No 36
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=21.94 E-value=1.8e+02 Score=20.77 Aligned_cols=38 Identities=21% Similarity=0.098 Sum_probs=29.2
Q ss_pred EEeccCeeeeecccccCchhhHHHHhhhhhhhccCCCCCeee
Q 045129 40 VYTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLEIDGPITL 81 (136)
Q Consensus 40 VyVGe~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~~~G~L~i 81 (136)
-|-||--++-++. ...|.+|.++-++-|.|..++++++
T Consensus 6 ~y~gdi~it~~d~----~~s~e~L~~~v~~~c~~~~~q~ft~ 43 (83)
T cd06404 6 AYNGDIMITSIDP----SISLEELCNEVRDMCRFHNDQPFTL 43 (83)
T ss_pred EecCcEEEEEcCC----CcCHHHHHHHHHHHhCCCCCCcEEE
Confidence 3556655555554 4569999999999999998888876
No 37
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=21.71 E-value=1.1e+02 Score=20.93 Aligned_cols=30 Identities=13% Similarity=0.381 Sum_probs=18.4
Q ss_pred ccCCcEEEEeccCeeeeecccccCchhhHHHHhhh
Q 045129 33 AYKGHFVVYTTDQARFLIPLEYLSKRIFREPLKLS 67 (136)
Q Consensus 33 vpkG~~~VyVGe~~RFvVp~~yLnhp~F~~LL~~a 67 (136)
+-.=|+|+++++. ++.|| ..+.+.+||++.
T Consensus 22 iGNrH~p~~i~~~-~l~v~----~d~~l~~~L~~l 51 (87)
T PF05194_consen 22 IGNRHWPLFIEED-ELYVP----YDHVLEELLRKL 51 (87)
T ss_dssp HHHTT--EEEETT-EEEEE------HHHHHHHHHT
T ss_pred HcCCccceEEcCC-EEEec----CcHHHHHHHHHC
Confidence 3455889999877 77777 566667777764
No 38
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=20.78 E-value=2.7e+02 Score=23.30 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=39.9
Q ss_pred CCcEEEEec-cCeeeeecccccCchhhHHHHhhhhhhhccCCC---------------CCeeecCCHHHHHHHHHHH
Q 045129 35 KGHFVVYTT-DQARFLIPLEYLSKRIFREPLKLSEVEFGLEID---------------GPITLPCDASFMEYVILFL 95 (136)
Q Consensus 35 kG~~~VyVG-e~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~~~---------------G~L~iPCd~~~Fe~vl~~i 95 (136)
.|+|.|.-. ++.++.+.+..-.-+....++.....-||++.| -+|++|...+.||.+++.|
T Consensus 45 ~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~aI 121 (283)
T PRK10308 45 RGVVTVIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRAI 121 (283)
T ss_pred cEEEEEEEcCCCceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHH
Confidence 445544443 244555555543335555677777777776654 4689999999999998876
No 39
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=20.21 E-value=1.9e+02 Score=25.43 Aligned_cols=63 Identities=11% Similarity=0.264 Sum_probs=43.4
Q ss_pred cccCCcEEEEecc---------------------Ceeeeecccc--cCchhhHHHHhhhhhhhccCCCCCeeecCCHHHH
Q 045129 32 LAYKGHFVVYTTD---------------------QARFLIPLEY--LSKRIFREPLKLSEVEFGLEIDGPITLPCDASFM 88 (136)
Q Consensus 32 ~vpkG~~~VyVGe---------------------~~RFvVp~~y--Lnhp~F~~LL~~aeeEfG~~~~G~L~iPCd~~~F 88 (136)
..+++-+.|.||. .-|++||++| =|..-..+..+.+++-||- +-+++-=+---|
T Consensus 141 ~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~---~~~~~L~e~l~f 217 (322)
T PRK02797 141 RQRAGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGA---ENFQILTEKLPF 217 (322)
T ss_pred ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCc---ccEEehhhhCCH
Confidence 4467789999872 2599999999 5655666666666777763 345555566667
Q ss_pred HHHHHHHhc
Q 045129 89 EYVILFLQR 97 (136)
Q Consensus 89 e~vl~~i~~ 97 (136)
+..+.+|.+
T Consensus 218 ~eYl~lL~~ 226 (322)
T PRK02797 218 DDYLALLRQ 226 (322)
T ss_pred HHHHHHHHh
Confidence 777777654
No 40
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=20.14 E-value=2e+02 Score=20.57 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=23.2
Q ss_pred EEEec-cCeeeeecccccCchhhHHHHhhhhhhhccCC
Q 045129 39 VVYTT-DQARFLIPLEYLSKRIFREPLKLSEVEFGLEI 75 (136)
Q Consensus 39 ~VyVG-e~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~~ 75 (136)
.=||| +.+-..|+-. -.|.+|..+..+.++...
T Consensus 17 l~Y~GG~tr~i~V~r~----~s~~el~~kl~~~~~~~~ 50 (97)
T cd06410 17 LRYVGGETRIVSVDRS----ISFKELVSKLSELFGAGV 50 (97)
T ss_pred EEEcCCceEEEEEcCC----CCHHHHHHHHHHHhCCCC
Confidence 35887 5666667755 467778888888876654
Done!