Query 045129
Match_columns 136
No_of_seqs 106 out of 669
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 17:48:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 69.4 19 0.00065 24.5 6.8 62 36-99 6-72 (107)
2 2nz0_B Potassium voltage-gated 68.4 13 0.00043 27.2 5.9 63 34-99 33-97 (140)
3 2vkp_A BTB/POZ domain-containi 64.0 14 0.00048 24.0 5.0 57 39-99 12-74 (109)
4 1und_A Advillin, P92; actin bi 54.9 4.6 0.00016 23.8 1.1 19 53-71 1-19 (37)
5 1s1g_A Potassium voltage-gated 52.0 19 0.00066 25.6 4.3 63 34-99 11-75 (124)
6 1vd2_A Protein kinase C, IOTA 46.9 17 0.00058 24.9 3.2 35 43-81 15-49 (89)
7 2vpk_A Myoneurin; transcriptio 44.3 45 0.0015 21.9 5.0 52 40-99 27-83 (116)
8 2xko_C PIPX, global nitrogen r 41.4 4.4 0.00015 28.4 -0.5 15 52-66 4-18 (89)
9 1w8x_N Protein P31, protein C, 40.8 9.6 0.00033 27.8 1.2 28 34-61 86-123 (126)
10 1r29_A B-cell lymphoma 6 prote 40.4 48 0.0016 22.1 4.7 55 40-99 34-92 (127)
11 2al3_A TUG long isoform; TUG U 38.2 32 0.0011 23.8 3.5 37 37-75 11-47 (90)
12 3qli_A Coenzyme A transferase; 38.2 13 0.00044 32.3 1.8 43 30-73 401-454 (455)
13 1z3x_A Putative cytidyltransfe 35.6 4.4 0.00015 32.7 -1.5 30 31-61 208-237 (238)
14 3drx_A BTB/POZ domain-containi 35.2 55 0.0019 25.4 4.8 63 35-99 11-78 (202)
15 3ga1_A Nucleus accumbens-assoc 34.7 65 0.0022 21.6 4.7 52 39-98 37-92 (129)
16 1o51_A Hypothetical protein TM 33.6 32 0.0011 24.2 3.0 26 38-69 16-41 (114)
17 1yu8_X Villin; alpha helix, 3- 32.0 17 0.00057 23.9 1.2 19 53-71 31-49 (67)
18 1qzp_A Dematin; villin headpie 30.9 14 0.0005 24.2 0.7 19 53-71 32-50 (68)
19 2if5_A Zinc finger and BTB dom 30.6 93 0.0032 20.3 4.9 56 40-99 30-88 (120)
20 1ujs_A Actin-binding LIM prote 30.5 19 0.00066 24.9 1.3 20 53-72 46-65 (88)
21 3n5b_B ASR0485 protein; PII, P 29.9 8.9 0.0003 27.8 -0.5 32 29-67 11-42 (112)
22 2bkf_A Zinc-finger protein NBR 28.8 1.3E+02 0.0046 20.5 5.4 51 40-92 12-71 (87)
23 1y6i_A Mg-chelatase cofactor G 28.3 7 0.00024 31.4 -1.4 29 31-61 200-229 (233)
24 2k6m_S Supervillin; SVHP, HP, 28.1 18 0.00063 23.6 0.8 20 53-72 31-50 (67)
25 2dcl_A Hypothetical UPF0166 pr 25.7 44 0.0015 24.0 2.6 27 37-69 11-37 (127)
26 3ohu_A Transcription regulator 25.6 89 0.0031 20.6 4.1 54 39-98 36-93 (125)
27 2i46_A Adrenocortical dysplasi 25.2 45 0.0015 25.3 2.6 52 31-85 46-100 (161)
28 1dd4_C 50S ribosomal protein L 24.9 44 0.0015 19.7 2.0 21 59-79 17-37 (40)
29 2ccq_A P97, peptide N-glycanas 24.0 1E+02 0.0034 21.1 4.1 43 55-97 46-97 (99)
30 4ajy_C Transcription elongatio 23.9 1.3E+02 0.0046 19.5 4.7 53 43-96 9-63 (97)
31 1wj6_A KIAA0049 protein, RSGI 23.2 1.5E+02 0.0052 20.9 4.9 51 40-92 20-79 (101)
32 3b84_A Zinc finger and BTB dom 23.1 1.5E+02 0.0052 19.4 4.9 52 40-99 29-83 (119)
33 1zav_U 50S ribosomal protein L 22.7 41 0.0014 18.7 1.5 13 60-72 18-30 (30)
34 2ppi_A Gigaxonin; BTB domain, 21.7 1.8E+02 0.0062 20.0 5.2 58 40-99 52-112 (144)
35 3kvt_A Potassium channel prote 21.3 39 0.0013 23.6 1.5 60 36-99 5-68 (115)
36 1eak_A 72 kDa type IV collagen 21.1 1.2E+02 0.004 26.1 4.8 50 66-120 21-75 (421)
37 3htm_A Speckle-type POZ protei 20.4 1.4E+02 0.0049 20.4 4.4 58 38-99 37-97 (172)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=69.40 E-value=19 Score=24.49 Aligned_cols=62 Identities=13% Similarity=0.209 Sum_probs=44.8
Q ss_pred CcEEEEeccCeeeeecccccC-ch--hhHHHHhhhhhhhc--cCCCCCeeecCCHHHHHHHHHHHhcCC
Q 045129 36 GHFVVYTTDQARFLIPLEYLS-KR--IFREPLKLSEVEFG--LEIDGPITLPCDASFMEYVILFLQRGG 99 (136)
Q Consensus 36 G~~~VyVGe~~RFvVp~~yLn-hp--~F~~LL~~aeeEfG--~~~~G~L~iPCd~~~Fe~vl~~i~~~~ 99 (136)
..+.+-|| +++|.+..+-|. +| .|..|.... .++. .+.+|.+-|-.|...|++|+..++.+.
T Consensus 6 ~~v~LNVG-G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~ 72 (107)
T 3drz_A 6 KWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 72 (107)
T ss_dssp CEEEEEET-TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSC
T ss_pred CEEEEEEC-CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCe
Confidence 45677787 788998877765 33 566665422 1232 346799999999999999999998763
No 2
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=68.36 E-value=13 Score=27.20 Aligned_cols=63 Identities=19% Similarity=0.125 Sum_probs=43.2
Q ss_pred cCCcEEEEeccCeeeeecccccC-chhhHHHHhhhhhhhccC-CCCCeeecCCHHHHHHHHHHHhcCC
Q 045129 34 YKGHFVVYTTDQARFLIPLEYLS-KRIFREPLKLSEVEFGLE-IDGPITLPCDASFMEYVILFLQRGG 99 (136)
Q Consensus 34 pkG~~~VyVGe~~RFvVp~~yLn-hp~F~~LL~~aeeEfG~~-~~G~L~iPCd~~~Fe~vl~~i~~~~ 99 (136)
....+.+-|| +.||.+..+-|. +|- .+|..++...-++ .+|.+-|-.|-..|++||..++.+.
T Consensus 33 ~~~~V~LNVG-G~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~ 97 (140)
T 2nz0_B 33 QDELIVLNVS-GRRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 97 (140)
T ss_dssp CCCEEEEEET-TEEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSS
T ss_pred CCCEEEEEEC-CEEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCC
Confidence 4556777777 677887766552 332 2333343333343 5799999999999999999998864
No 3
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=63.97 E-value=14 Score=23.99 Aligned_cols=57 Identities=9% Similarity=0.068 Sum_probs=40.8
Q ss_pred EEEecc---Ceeeeeccccc--CchhhHHHHhhhhhhhccCCCCCeeec-CCHHHHHHHHHHHhcCC
Q 045129 39 VVYTTD---QARFLIPLEYL--SKRIFREPLKLSEVEFGLEIDGPITLP-CDASFMEYVILFLQRGG 99 (136)
Q Consensus 39 ~VyVGe---~~RFvVp~~yL--nhp~F~~LL~~aeeEfG~~~~G~L~iP-Cd~~~Fe~vl~~i~~~~ 99 (136)
.+.||+ .++|-+.-..| ..|.|+.++...-.|- . ..|.|| .+...|+.++..+-.+.
T Consensus 12 ~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~ 74 (109)
T 2vkp_A 12 HFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDE 74 (109)
T ss_dssp EEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCC
T ss_pred EEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCC
Confidence 455665 38898888887 5899999997654442 2 678887 69999999999988754
No 4
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=54.95 E-value=4.6 Score=23.78 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=17.3
Q ss_pred cccCchhhHHHHhhhhhhh
Q 045129 53 EYLSKRIFREPLKLSEVEF 71 (136)
Q Consensus 53 ~yLnhp~F~~LL~~aeeEf 71 (136)
.||+...|.+++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999998
No 5
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=52.04 E-value=19 Score=25.57 Aligned_cols=63 Identities=19% Similarity=0.125 Sum_probs=43.0
Q ss_pred cCCcEEEEeccCeeeeecccccC-chhhHHHHhhhhhhhccC-CCCCeeecCCHHHHHHHHHHHhcCC
Q 045129 34 YKGHFVVYTTDQARFLIPLEYLS-KRIFREPLKLSEVEFGLE-IDGPITLPCDASFMEYVILFLQRGG 99 (136)
Q Consensus 34 pkG~~~VyVGe~~RFvVp~~yLn-hp~F~~LL~~aeeEfG~~-~~G~L~iPCd~~~Fe~vl~~i~~~~ 99 (136)
....+.+-|| +.||.+..+-|. .|- .+|..++...-++ .+|.+-|-.|...|++||..++.+.
T Consensus 11 ~~~~V~LNVG-G~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~ 75 (124)
T 1s1g_A 11 QDELIVLNVS-GRRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 75 (124)
T ss_dssp -CCEEEEEET-TEEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEeC-CEEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhcCC
Confidence 4456777777 778888776653 231 2333343333333 5799999999999999999998864
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=46.89 E-value=17 Score=24.89 Aligned_cols=35 Identities=9% Similarity=-0.082 Sum_probs=27.8
Q ss_pred ccCeeeeecccccCchhhHHHHhhhhhhhccCCCCCeee
Q 045129 43 TDQARFLIPLEYLSKRIFREPLKLSEVEFGLEIDGPITL 81 (136)
Q Consensus 43 Ge~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~~~G~L~i 81 (136)
||-.||-||. ...|.+|.++..+-|++..+.++++
T Consensus 15 gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 15 GDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp SCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred CeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 6778888886 4689999999999999865555544
No 7
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=44.32 E-value=45 Score=21.89 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=39.2
Q ss_pred EEeccCeeeeeccccc--CchhhHHHHhhhhhhhccCCCCCeeec---CCHHHHHHHHHHHhcCC
Q 045129 40 VYTTDQARFLIPLEYL--SKRIFREPLKLSEVEFGLEIDGPITLP---CDASFMEYVILFLQRGG 99 (136)
Q Consensus 40 VyVGe~~RFvVp~~yL--nhp~F~~LL~~aeeEfG~~~~G~L~iP---Cd~~~Fe~vl~~i~~~~ 99 (136)
+.|| .++|-+.-..| ..|.|+.++... .++.+.|+ .+...|+.++..+-.+.
T Consensus 27 l~v~-~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~ 83 (116)
T 2vpk_A 27 IVIG-EFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGT 83 (116)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSC
T ss_pred EEEC-CEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCC
Confidence 3444 46777776666 579999998764 35778887 79999999999988753
No 8
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=41.37 E-value=4.4 Score=28.35 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=11.2
Q ss_pred ccccCchhhHHHHhh
Q 045129 52 LEYLSKRIFREPLKL 66 (136)
Q Consensus 52 ~~yLnhp~F~~LL~~ 66 (136)
-.|||||.|.-|-.-
T Consensus 4 E~YLNHPtFGlLy~V 18 (89)
T 2xko_C 4 ENYLNHPTFGLLYQI 18 (89)
T ss_dssp CCEEEETTTEEEEEE
T ss_pred cccccCCccchhhee
Confidence 359999999776543
No 9
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=40.80 E-value=9.6 Score=27.75 Aligned_cols=28 Identities=29% Similarity=0.559 Sum_probs=19.1
Q ss_pred cCCcEEEEeccCeeee----------ecccccCchhhH
Q 045129 34 YKGHFVVYTTDQARFL----------IPLEYLSKRIFR 61 (136)
Q Consensus 34 pkG~~~VyVGe~~RFv----------Vp~~yLnhp~F~ 61 (136)
..|+||+.|-.+.+|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLVPGRAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEECCSSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CcccceeeccchhhhhhhhhcCCCcceeeEEEeceeee
Confidence 5799999997766666 688899988643
No 10
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=40.41 E-value=48 Score=22.10 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=41.5
Q ss_pred EEeccCeeeeeccccc--CchhhHHHHhhhhhhhccCCCCCeee-c-CCHHHHHHHHHHHhcCC
Q 045129 40 VYTTDQARFLIPLEYL--SKRIFREPLKLSEVEFGLEIDGPITL-P-CDASFMEYVILFLQRGG 99 (136)
Q Consensus 40 VyVGe~~RFvVp~~yL--nhp~F~~LL~~aeeEfG~~~~G~L~i-P-Cd~~~Fe~vl~~i~~~~ 99 (136)
+.|| .++|-+.-..| ..|.|+.++...-.| ....|.| + .+...|+.++..+-.+.
T Consensus 34 l~v~-~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 34 IVVS-REQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSR 92 (127)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred EEEC-CEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 3444 46777776666 689999999875555 4678999 4 78999999999987653
No 11
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=38.20 E-value=32 Score=23.78 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=28.4
Q ss_pred cEEEEeccCeeeeecccccCchhhHHHHhhhhhhhccCC
Q 045129 37 HFVVYTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLEI 75 (136)
Q Consensus 37 ~~~VyVGe~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~~ 75 (136)
+|.|.--+.+|+.|++ -..-.+.++|++|-+.|||+.
T Consensus 11 ~v~Vl~~n~rr~~VKv--tp~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKV--TPSTVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp CEEEECTTSCEEEECC--CTTSBHHHHHHHHHHHTTCCG
T ss_pred EEEEEcCCCcEEEEEE--CCCCCHHHHHHHHHHHhCCCh
Confidence 3444445789999998 344578899999999999974
No 12
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=38.16 E-value=13 Score=32.31 Aligned_cols=43 Identities=21% Similarity=0.179 Sum_probs=31.1
Q ss_pred cccccCCcEEEEecc-----------CeeeeecccccCchhhHHHHhhhhhhhcc
Q 045129 30 AQLAYKGHFVVYTTD-----------QARFLIPLEYLSKRIFREPLKLSEVEFGL 73 (136)
Q Consensus 30 ~~~vpkG~~~VyVGe-----------~~RFvVp~~yLnhp~F~~LL~~aeeEfG~ 73 (136)
+.+.+++++-+.|-| ++|-.-=+. +.||.||+.|.+.+++.|+
T Consensus 401 ~vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 401 PVTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp SCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred CcccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 456688888887743 344443344 8999999999998888764
No 13
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=35.60 E-value=4.4 Score=32.74 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=19.9
Q ss_pred ccccCCcEEEEeccCeeeeecccccCchhhH
Q 045129 31 QLAYKGHFVVYTTDQARFLIPLEYLSKRIFR 61 (136)
Q Consensus 31 ~~vpkG~~~VyVGe~~RFvVp~~yLnhp~F~ 61 (136)
..+|+||+|+.- .-+=.-+=.++|+||.|.
T Consensus 208 l~AP~GHLP~~~-~lrGv~l~~~ll~hpa~~ 237 (238)
T 1z3x_A 208 LSAPRGHLPLTN-QLRGVQVLNALLNHPAWT 237 (238)
T ss_dssp TTSCTTCCSCCC-CTTCSHHHHHHHTCGGGG
T ss_pred CCCCCCCCCcCc-ccccHHHHHHHHcCcccc
Confidence 468999999854 212222445689999873
No 14
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=35.21 E-value=55 Score=25.45 Aligned_cols=63 Identities=13% Similarity=0.218 Sum_probs=44.7
Q ss_pred CCcEEEEeccCeeeeecccccCc-h--hhHHHHhhhhhhhc--cCCCCCeeecCCHHHHHHHHHHHhcCC
Q 045129 35 KGHFVVYTTDQARFLIPLEYLSK-R--IFREPLKLSEVEFG--LEIDGPITLPCDASFMEYVILFLQRGG 99 (136)
Q Consensus 35 kG~~~VyVGe~~RFvVp~~yLnh-p--~F~~LL~~aeeEfG--~~~~G~L~iPCd~~~Fe~vl~~i~~~~ 99 (136)
...+.+-|| +.||.+..+-|.. | .|..|...- .++. .+.+|.+-|-.|...|++||..++.+.
T Consensus 11 ~~~V~LNVG-G~~F~Tt~sTL~r~PdS~L~~lfs~~-~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~ 78 (202)
T 3drx_A 11 SKWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 78 (202)
T ss_dssp CCEEEEEET-TEEEEEETTGGGSCTTSSTHHHHSCC-CC----BCTTCCEEECSCSTTHHHHHHHHHHSC
T ss_pred CCEEEEEEC-CEEEEEeHHHHhCCCcchHHHHhcCc-cccCcccCCCccEEecCChHHHHHHHHHhcCCc
Confidence 456777888 6899998877753 4 566664321 1232 346799999999999999999998653
No 15
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=34.67 E-value=65 Score=21.62 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=38.9
Q ss_pred EEEeccCeeeeecccccC--chhhHHHHhhhhhhhccCCCCCeeec--CCHHHHHHHHHHHhcC
Q 045129 39 VVYTTDQARFLIPLEYLS--KRIFREPLKLSEVEFGLEIDGPITLP--CDASFMEYVILFLQRG 98 (136)
Q Consensus 39 ~VyVGe~~RFvVp~~yLn--hp~F~~LL~~aeeEfG~~~~G~L~iP--Cd~~~Fe~vl~~i~~~ 98 (136)
.+.|| .++|-+.-..|. .|.|+.++... ....|.|| .+.+.|+.++..+-.+
T Consensus 37 ~l~v~-~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg 92 (129)
T 3ga1_A 37 SVVVK-GHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTG 92 (129)
T ss_dssp EEEET-TEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred EEEEC-CEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCC
Confidence 34444 566666655554 69999998765 56788996 8999999999998764
No 16
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=33.59 E-value=32 Score=24.21 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=22.8
Q ss_pred EEEEeccCeeeeecccccCchhhHHHHhhhhh
Q 045129 38 FVVYTTDQARFLIPLEYLSKRIFREPLKLSEV 69 (136)
Q Consensus 38 ~~VyVGe~~RFvVp~~yLnhp~F~~LL~~aee 69 (136)
+-+|+||..|+- +.|+...|++.+++
T Consensus 16 Lriy~~E~~~~~------g~pL~~~Iv~~~~~ 41 (114)
T 1o51_A 16 LKIYLGEKDKHS------GKPLFEYLVKRAYE 41 (114)
T ss_dssp EEEEEETTCEET------TEEHHHHHHHHHHH
T ss_pred EEEEECCccccC------CeEHHHHHHHHHHH
Confidence 678999988874 78999999999988
No 17
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=32.01 E-value=17 Score=23.91 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=18.2
Q ss_pred cccCchhhHHHHhhhhhhh
Q 045129 53 EYLSKRIFREPLKLSEVEF 71 (136)
Q Consensus 53 ~yLnhp~F~~LL~~aeeEf 71 (136)
.||+.-.|.+++.|+.+||
T Consensus 31 ~yLsdedF~~vFgms~~eF 49 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hcCCHHHHHHHHCcCHHHH
Confidence 6999999999999999998
No 18
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=30.92 E-value=14 Score=24.15 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=18.1
Q ss_pred cccCchhhHHHHhhhhhhh
Q 045129 53 EYLSKRIFREPLKLSEVEF 71 (136)
Q Consensus 53 ~yLnhp~F~~LL~~aeeEf 71 (136)
.||+.-.|.+++.|+.+||
T Consensus 32 ~yLsdedF~~vFgmsr~eF 50 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 6999999999999999998
No 19
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=30.61 E-value=93 Score=20.34 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=38.6
Q ss_pred EEeccCeeeeeccccc--CchhhHHHHhhhhhhhccCCCCCeeec-CCHHHHHHHHHHHhcCC
Q 045129 40 VYTTDQARFLIPLEYL--SKRIFREPLKLSEVEFGLEIDGPITLP-CDASFMEYVILFLQRGG 99 (136)
Q Consensus 40 VyVGe~~RFvVp~~yL--nhp~F~~LL~~aeeEfG~~~~G~L~iP-Cd~~~Fe~vl~~i~~~~ 99 (136)
+.|| .++|-+.-..| ..|.|+.++...-.| .....|.|+ .+...|+.++..+-.+.
T Consensus 30 l~v~-~~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~ 88 (120)
T 2if5_A 30 ILVE-GREFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTAT 88 (120)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred EEEC-CEEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCC
Confidence 3344 56777776666 479999999754333 245678888 68999999999987654
No 20
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=30.52 E-value=19 Score=24.86 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.6
Q ss_pred cccCchhhHHHHhhhhhhhc
Q 045129 53 EYLSKRIFREPLKLSEVEFG 72 (136)
Q Consensus 53 ~yLnhp~F~~LL~~aeeEfG 72 (136)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 21
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=29.85 E-value=8.9 Score=27.81 Aligned_cols=32 Identities=9% Similarity=0.205 Sum_probs=11.9
Q ss_pred ccccccCCcEEEEeccCeeeeecccccCchhhHHHHhhh
Q 045129 29 TAQLAYKGHFVVYTTDQARFLIPLEYLSKRIFREPLKLS 67 (136)
Q Consensus 29 ~~~~vpkG~~~VyVGe~~RFvVp~~yLnhp~F~~LL~~a 67 (136)
++..||+|..--=+. .-.|||||.|.-|-.-+
T Consensus 11 ~~~~~~~~~~~~~ms-------~E~YLNHPTFGLLyrVc 42 (112)
T 3n5b_B 11 SSGLVPRGSHMNPEN-------SETYINHPTWGLLYRIC 42 (112)
T ss_dssp ----------------------CCCEEEETTTEEEEEEE
T ss_pred cCCcccCCccCCCcc-------hhhhccCCccchheeee
Confidence 356788885422111 22399999998775443
No 22
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=28.79 E-value=1.3e+02 Score=20.54 Aligned_cols=51 Identities=12% Similarity=0.293 Sum_probs=37.4
Q ss_pred EEeccCeeeeecccccCchhhHHHHhhhhhhhccC--------C-CCCeeecCCHHHHHHHH
Q 045129 40 VYTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLE--------I-DGPITLPCDASFMEYVI 92 (136)
Q Consensus 40 VyVGe~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~--------~-~G~L~iPCd~~~Fe~vl 92 (136)
-|.||.+||.| +++..+.|.+|-.+...-||+. . +-.|+|.=+.+..|-+-
T Consensus 12 ~f~ge~~rf~v--s~~~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq~E~eEAlk 71 (87)
T 2bkf_A 12 TFKNEIQSFLV--SDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALK 71 (87)
T ss_dssp EETTEEEEEEE--SCGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHHHH
T ss_pred EEcCCeeEEEe--ccCCCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecHHHHHHHHH
Confidence 46688999976 5899999999999999999964 2 34566766555444433
No 23
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=28.29 E-value=7 Score=31.39 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=20.0
Q ss_pred ccccCCcEEEEecc-CeeeeecccccCchhhH
Q 045129 31 QLAYKGHFVVYTTD-QARFLIPLEYLSKRIFR 61 (136)
Q Consensus 31 ~~vpkG~~~VyVGe-~~RFvVp~~yLnhp~F~ 61 (136)
..+|+||+|+.-.= +-| +=-++|+||.|.
T Consensus 200 l~AP~GHLP~~~~lrG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 200 LSAPQGHLPLLNQLRGVR--VAESLYRHPVWS 229 (233)
T ss_dssp TTSCTTCCSCCCCTTCTH--HHHHHHTSTHHH
T ss_pred CCCCCCCCCCccccchHH--HHHHHHCCcccc
Confidence 46899999986521 222 445789999884
No 24
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=28.05 E-value=18 Score=23.64 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=18.6
Q ss_pred cccCchhhHHHHhhhhhhhc
Q 045129 53 EYLSKRIFREPLKLSEVEFG 72 (136)
Q Consensus 53 ~yLnhp~F~~LL~~aeeEfG 72 (136)
.||+.-.|.+++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 25
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=25.68 E-value=44 Score=23.98 Aligned_cols=27 Identities=4% Similarity=0.273 Sum_probs=23.9
Q ss_pred cEEEEeccCeeeeecccccCchhhHHHHhhhhh
Q 045129 37 HFVVYTTDQARFLIPLEYLSKRIFREPLKLSEV 69 (136)
Q Consensus 37 ~~~VyVGe~~RFvVp~~yLnhp~F~~LL~~aee 69 (136)
.+-+|+|+..|+ =+.|+...|++.+.+
T Consensus 11 ~LrIy~~E~d~~------~g~pL~~~Iv~~a~~ 37 (127)
T 2dcl_A 11 RLRIYIGENDKW------EGRPLYKVIVEKLRE 37 (127)
T ss_dssp EEEEEEETTCEE------TTEEHHHHHHHHHHH
T ss_pred EEEEEEcccccc------CCcCHHHHHHHHHHH
Confidence 588999998887 388999999999988
No 26
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=25.57 E-value=89 Score=20.64 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=38.7
Q ss_pred EEEeccCeeeeecccccC--chhhHHHHhhhhhhhccCCCCCeeec--CCHHHHHHHHHHHhcC
Q 045129 39 VVYTTDQARFLIPLEYLS--KRIFREPLKLSEVEFGLEIDGPITLP--CDASFMEYVILFLQRG 98 (136)
Q Consensus 39 ~VyVGe~~RFvVp~~yLn--hp~F~~LL~~aeeEfG~~~~G~L~iP--Cd~~~Fe~vl~~i~~~ 98 (136)
.+.|| .++|-+.-..|. .|.|+.++.....| ...|.|| .+...|+.++..+-.+
T Consensus 36 ~l~v~-~~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~~~i~l~~~~~~~~f~~~l~~iYtg 93 (125)
T 3ohu_A 36 TLIVE-RKEFRAHRAVLAACSEYFWQALVGQTKN-----DLVVSLPEEVTARGFGPLLQFAYTA 93 (125)
T ss_dssp EEEET-TEEEEECHHHHHHHBHHHHHHHTTCCCS-----SCEEECCTTCCHHHHHHHHHHHTTS
T ss_pred EEEEC-CEEEechHHHHHHcCHHHHHHhcCCCCC-----CcEEEeCCCCCHHHHHHHHHhHcCC
Confidence 34444 456666655554 69999999765333 5678887 7999999999999765
No 27
>2i46_A Adrenocortical dysplasia protein homolog; TPP1, OB fold, POT1 binding, protein binding; 2.70A {Homo sapiens}
Probab=25.21 E-value=45 Score=25.28 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=31.9
Q ss_pred ccccCCcEEEEeccCeeeeecccccCchhhHHHHhhhhhhhccCC-CCCeeec--CCH
Q 045129 31 QLAYKGHFVVYTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLEI-DGPITLP--CDA 85 (136)
Q Consensus 31 ~~vpkG~~~VyVGe~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~~-~G~L~iP--Cd~ 85 (136)
.+.+.---++.|.|+.-++ ++|-.+.-...++.-|+||||.. +|.|-|- |++
T Consensus 46 pdt~~v~A~llvSDgthsv---rclvTrEA~~~sdwEEk~Fgfr~~egrlllLqd~~V 100 (161)
T 2i46_A 46 PDTSDVGATLLVSDGTHSV---RCLVTREALDTSDWEEKEFGFRGTEGRLLLLQDCGV 100 (161)
T ss_dssp CCCTTSCEEEEEECSSCEE---EEEECHHHHHTSCCTTSCSSCTTCTTEEEEEEEEEE
T ss_pred CCCCCceeEEEEcCCceEE---EEEecHHHhhhhhhhhhhcCcccccceEEEEecCCE
Confidence 4555555667787754332 23334444555566688999995 8888763 554
No 28
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=24.85 E-value=44 Score=19.71 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=15.5
Q ss_pred hhHHHHhhhhhhhccCCCCCe
Q 045129 59 IFREPLKLSEVEFGLEIDGPI 79 (136)
Q Consensus 59 ~F~~LL~~aeeEfG~~~~G~L 79 (136)
...+|.+..||+||.....|.
T Consensus 17 E~~eLvk~leekfGVsaaa~v 37 (40)
T 1dd4_C 17 ELAELVKKLEDKFGVTAAAPV 37 (40)
T ss_dssp HHHHHHHHHHHHTCCCSCC--
T ss_pred HHHHHHHHHHHHHCCCccccc
Confidence 346899999999999865543
No 29
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=23.95 E-value=1e+02 Score=21.08 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=29.9
Q ss_pred cCchhhHHHHhhhh------hhhccCC-CCCeeec--CCHHHHHHHHHHHhc
Q 045129 55 LSKRIFREPLKLSE------VEFGLEI-DGPITLP--CDASFMEYVILFLQR 97 (136)
Q Consensus 55 Lnhp~F~~LL~~ae------eEfG~~~-~G~L~iP--Cd~~~Fe~vl~~i~~ 97 (136)
+++|.|++-+-..+ +..||.. ++.+.+| .+....+++...|..
T Consensus 46 ~~N~~f~~~v~~~~G~~e~L~a~GF~~~~~~l~lp~~~~~~~l~~~~d~l~~ 97 (99)
T 2ccq_A 46 IGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIAI 97 (99)
T ss_dssp TTCHHHHHHTTTSTTHHHHHHHHTCEECSSEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHhcCCccHHHHHHHccceeCCCeeecCCCCCHHHHHHHHHHHHh
Confidence 66888888665442 2569984 6779997 677777777766654
No 30
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=23.92 E-value=1.3e+02 Score=19.55 Aligned_cols=53 Identities=11% Similarity=0.236 Sum_probs=36.6
Q ss_pred ccCeeeeeccccc-CchhhHHHHhhhhhhhccCCCCCeeec-CCHHHHHHHHHHHh
Q 045129 43 TDQARFLIPLEYL-SKRIFREPLKLSEVEFGLEIDGPITLP-CDASFMEYVILFLQ 96 (136)
Q Consensus 43 Ge~~RFvVp~~yL-nhp~F~~LL~~aeeEfG~~~~G~L~iP-Cd~~~Fe~vl~~i~ 96 (136)
.|++.|.|+-.-. ..+.|+.+|+... .+.-..+++|.|| -+...++.|+....
T Consensus 9 sDg~~F~v~r~vA~~S~~ik~m~~~~~-~~~E~~~~~I~l~~V~~~iL~kViey~~ 63 (97)
T 4ajy_C 9 SDGHEFIVKREHALTSGTIKAMLSGPG-QFAENETNEVNFREIPSHVLSKVCMYFT 63 (97)
T ss_dssp TTCCEEEEEHHHHTTSHHHHHHHCCC---------CEEECTTSCHHHHHHHHHHHH
T ss_pred cCCcEEEecHHHHHHhHHHHHHHHhCC-CccccCCCceECCCCCHHHHHHHHHHHH
Confidence 4788999987653 4789999987521 0111246889988 78999999998887
No 31
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=23.23 E-value=1.5e+02 Score=20.87 Aligned_cols=51 Identities=12% Similarity=0.293 Sum_probs=37.1
Q ss_pred EEeccCeeeeecccccCchhhHHHHhhhhhhhccC--------C-CCCeeecCCHHHHHHHH
Q 045129 40 VYTTDQARFLIPLEYLSKRIFREPLKLSEVEFGLE--------I-DGPITLPCDASFMEYVI 92 (136)
Q Consensus 40 VyVGe~~RFvVp~~yLnhp~F~~LL~~aeeEfG~~--------~-~G~L~iPCd~~~Fe~vl 92 (136)
-|.||.+||.| +++..+.|.+|-.+...-||+. . +-.|+|.=+.+..|.+-
T Consensus 20 ~f~ge~~rF~V--s~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD~V~i~Sq~E~eEAlk 79 (101)
T 1wj6_A 20 TFKNEIQSFLV--SDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALK 79 (101)
T ss_dssp EETTEEEEEEE--SCTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSCEECCCSHHHHHHHHH
T ss_pred EEcCCeeEEEe--cCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCEEEEecHHHHHHHHH
Confidence 46689999976 5899999999999999999964 2 34556665554444433
No 32
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=23.13 E-value=1.5e+02 Score=19.41 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=37.9
Q ss_pred EEeccCeeeeeccccc--CchhhHHHHhhhhhhhccCCCCCeeec-CCHHHHHHHHHHHhcCC
Q 045129 40 VYTTDQARFLIPLEYL--SKRIFREPLKLSEVEFGLEIDGPITLP-CDASFMEYVILFLQRGG 99 (136)
Q Consensus 40 VyVGe~~RFvVp~~yL--nhp~F~~LL~~aeeEfG~~~~G~L~iP-Cd~~~Fe~vl~~i~~~~ 99 (136)
+.|| .++|-+.-..| ..|.|+.++.... .+.|.|| .+...|+.++..+-.+.
T Consensus 29 l~v~-~~~f~aHk~vLaa~S~yF~~~f~~~~-------~~~i~l~~~~~~~f~~ll~~iYtg~ 83 (119)
T 3b84_A 29 LDVG-GLVFKAHWSVLACCSHFFQSLYGDGS-------GGSVVLPAGFAEIFGLLLDFFYTGH 83 (119)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHTTTT-------CCCEEECGGGHHHHHHHHHHHHHSC
T ss_pred EEEC-CEEEEeeHHHHhhcCHHHHHHHCCCC-------CCeEEeCCCCHHHHHHHHHHHcCCC
Confidence 3344 46677766666 4799999987532 5788998 66889999999987653
No 33
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=22.73 E-value=41 Score=18.66 Aligned_cols=13 Identities=38% Similarity=0.488 Sum_probs=10.8
Q ss_pred hHHHHhhhhhhhc
Q 045129 60 FREPLKLSEVEFG 72 (136)
Q Consensus 60 F~~LL~~aeeEfG 72 (136)
..+|.+..||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888899997
No 34
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=21.67 E-value=1.8e+02 Score=19.97 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=39.5
Q ss_pred EEeccCeeeeeccccc--CchhhHHHHhhhhhhhccCCCCCeeec-CCHHHHHHHHHHHhcCC
Q 045129 40 VYTTDQARFLIPLEYL--SKRIFREPLKLSEVEFGLEIDGPITLP-CDASFMEYVILFLQRGG 99 (136)
Q Consensus 40 VyVGe~~RFvVp~~yL--nhp~F~~LL~~aeeEfG~~~~G~L~iP-Cd~~~Fe~vl~~i~~~~ 99 (136)
+.|| .++|-+.-..| ..|.|+.++...-.|- -.....|.|+ .+...|+.++..+-.+.
T Consensus 52 l~v~-~~~f~aHk~vLaa~S~yF~~mf~~~~~e~-e~~~~~I~l~~v~~~~f~~lL~fiYtg~ 112 (144)
T 2ppi_A 52 LVLD-GEEIPVQKNILAAASPYIRTKLNYNPPKD-DGSTYKIELEGISVMVMREILDYIFSGQ 112 (144)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHHHCC------CCCEEECCSSCHHHHHHHHHHHTTSC
T ss_pred EEEC-CEEEehHHHHHHHcCHHHHHHHcCCCccc-cCCCcEEEeCCCCHHHHHHHHHHHhCCC
Confidence 3344 56777776666 4799999997532210 0235678887 58999999999998654
No 35
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=21.31 E-value=39 Score=23.60 Aligned_cols=60 Identities=7% Similarity=0.039 Sum_probs=39.6
Q ss_pred CcEEEEeccCeeeeecccccC-ch--hhHHHHhhhhhhhccC-CCCCeeecCCHHHHHHHHHHHhcCC
Q 045129 36 GHFVVYTTDQARFLIPLEYLS-KR--IFREPLKLSEVEFGLE-IDGPITLPCDASFMEYVILFLQRGG 99 (136)
Q Consensus 36 G~~~VyVGe~~RFvVp~~yLn-hp--~F~~LL~~aeeEfG~~-~~G~L~iPCd~~~Fe~vl~~i~~~~ 99 (136)
..+.+-|| +.||....+-|. +| .+..|... -..++ .+|.+-|--|...|++|+..++.+.
T Consensus 5 ~~V~LNVG-G~~f~T~~~TL~~~P~s~L~~l~~~---~~~~~~~~g~~FiDRdp~~F~~ILnylR~G~ 68 (115)
T 3kvt_A 5 NRVIINVG-GIRHETYKATLKKIPATRLSRLTEG---MLNYDPVLNEYFFDRHPGVFAQIINYYRSGK 68 (115)
T ss_dssp CEEEEEET-TEEEEEEHHHHTTSCSSTTTTCCTT---STTEETTTTEEEECSCTTTHHHHHHHHHHSC
T ss_pred CEEEEEEC-CEEEEecHHHHhcCCCccHHHHhcC---CCCCCCCCCcEEEecChHHHHHHHHHhcCCC
Confidence 35667777 778888765554 22 22233221 12233 5789999999999999999998753
No 36
>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A
Probab=21.11 E-value=1.2e+02 Score=26.12 Aligned_cols=50 Identities=4% Similarity=-0.013 Sum_probs=38.0
Q ss_pred hhhhh-hccCCCCCeeecCCHHHHHHHHHHHhcC----CchhHHHHHHhhhccCCCCCCc
Q 045129 66 LSEVE-FGLEIDGPITLPCDASFMEYVILFLQRG----GDKNVETFLLMSVVTSCDSSQS 120 (136)
Q Consensus 66 ~aeeE-fG~~~~G~L~iPCd~~~Fe~vl~~i~~~----~~~~~~~~~l~~~~~~~c~~~~ 120 (136)
.--+. |||-.+.. ....++..|+.+++- .+-.++.+.|.-|.++||.+.-
T Consensus 21 ~yL~~~yGyl~~~~-----~~~~~~~Ai~~~Q~f~gL~vTG~LD~~T~~~M~~PRCGvpD 75 (421)
T 1eak_A 21 QYLNTFYGCPKESC-----NLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPD 75 (421)
T ss_dssp HHHHHHTCCCSSCC-----CHHHHHHHHHHHHHHSSCCCCCSCCHHHHHHHTSCBCSSCS
T ss_pred HHHHHhcCCCCCCC-----chHHHHHHHHHHHHHcCCCCCCccCHHHHHHhcCCCCCCCC
Confidence 33345 89976543 778888888888873 5778888999999999998743
No 37
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=20.38 E-value=1.4e+02 Score=20.37 Aligned_cols=58 Identities=10% Similarity=0.204 Sum_probs=41.6
Q ss_pred EEEEeccCeeeeeccccc--CchhhHHHHhhhhhhhccCCCCCeeec-CCHHHHHHHHHHHhcCC
Q 045129 38 FVVYTTDQARFLIPLEYL--SKRIFREPLKLSEVEFGLEIDGPITLP-CDASFMEYVILFLQRGG 99 (136)
Q Consensus 38 ~~VyVGe~~RFvVp~~yL--nhp~F~~LL~~aeeEfG~~~~G~L~iP-Cd~~~Fe~vl~~i~~~~ 99 (136)
+.+.|| .++|-+.-..| ..|.|+.++...-.| .....|.|| .+...|+.++..+-.+.
T Consensus 37 v~l~v~-~~~~~~Hk~iL~~~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~~l~~~Yt~~ 97 (172)
T 3htm_A 37 CCLCVA-GQEFQAHKAILAARSPVFSAMFEHEMEE---SKKNRVEINDVEPEVFKEMMCFIYTGK 97 (172)
T ss_dssp EEEEET-TEEEEECHHHHHHHCHHHHHHHHSCCCG---GGTTEEEECSSCHHHHHHHHHHHHHSC
T ss_pred eEEEEC-CEEEEeeHHHHHHcCHHHHHHHccCccc---cCCCeEEecCCCHHHHHHHHHHHhCCC
Confidence 344554 56788877776 479999999853222 234678887 68999999999988664
Done!