AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>045131
ATVALECKESEGGEVVYSREVVSDQSGTYKIPIEGCHAKLCQVRLVKSPKPECSEIVADG
LSSARIDLTPSVGSDPELIRYANDLGFMKKESLPECAKVLEEMFIHG
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT1G29140 AT1G29140 AT1G29140	protein from Arabidopsis thaliana	2.3e-14
BLAST match view associations BLAST with AT5G45880 AT5G45880 AT5G45880	protein from Arabidopsis thaliana	9.1e-13
BLAST match view associations BLAST with SAH7 SAH7 SAH7 AT4G08685	protein from Arabidopsis thaliana	1.9e-12
BLAST match view associations BLAST with AT4G18596 AT4G18596 AT4G18596	protein from Arabidopsis thaliana	3.9e-12
BLAST match view associations BLAST with AT1G78040 AT1G78040 AT1G78040	protein from Arabidopsis thaliana	7.4e-11
BLAST match view associations BLAST with AT5G10130 AT5G10130 AT5G10130	protein from Arabidopsis thaliana	2.6e-06
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045131
        (107 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2030022 - symbol:AT1G29140 "AT1G29140" species...   184  2.3e-14   1
TAIR|locus:2152440 - symbol:AT5G45880 "AT5G45880" species...   169  9.1e-13   1
TAIR|locus:505006434 - symbol:SAH7 "AT4G08685" species:37...   166  1.9e-12   1
TAIR|locus:505006496 - symbol:AT4G18596 "AT4G18596" speci...   163  3.9e-12   1
TAIR|locus:2029456 - symbol:AT1G78040 "AT1G78040" species...   151  7.4e-11   1
TAIR|locus:2184103 - symbol:AT5G10130 "AT5G10130" species...   108  2.6e-06   1


>TAIR|locus:2030022 [details] [associations]
            symbol:AT1G29140 "AT1G29140" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0048046 "apoplast"
            evidence=IDA] [GO:0009827 "plant-type cell wall modification"
            evidence=RCA] [GO:0009860 "pollen tube growth" evidence=RCA]
            EMBL:CP002684 GO:GO:0048046 EMBL:AC021043 InterPro:IPR006041
            Pfam:PF01190 HOGENOM:HOG000240768 ProtClustDB:CLSN2679677
            IPI:IPI00539684 PIR:H86413 RefSeq:NP_174209.1 UniGene:At.40798
            PRIDE:Q9LP44 ProMEX:Q9LP44 EnsemblPlants:AT1G29140.1 GeneID:839788
            KEGG:ath:AT1G29140 TAIR:At1g29140 InParanoid:Q9LP44 OMA:DNRGAEE
            PhylomeDB:Q9LP44 Genevestigator:Q9LP44 Uniprot:Q9LP44
        Length = 171

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 41/108 (37%), Positives = 63/108 (58%)

Query:     1 ATVALECKESEGGEVVYSREVVSDQSGTYKIPIEGCHAK-LCQVRLVKSPKPECSEIVAD 59
             A V LECK  E   V  ++E V+D +G Y++ + G H + +C++ L++SP PEC ++   
Sbjct:    58 AKVKLECKGRENQTVTLTKEAVTDNAGNYQMEVMGDHEEEVCEIVLLQSPDPECGDVNNQ 117

Query:    60 GL--SSARIDLTPSVGSDPELIRYANDLGFMKKESLPECAKVLEEMFI 105
                 ++ARI LT + G      R  N LGFM+K  L EC +V +E+ I
Sbjct:   118 EFLRNAARISLTANDGIVSNETRTINPLGFMRKTPLAECPQVFKELGI 165


>TAIR|locus:2152440 [details] [associations]
            symbol:AT5G45880 "AT5G45880" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0005615 "extracellular
            space" evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR006040 PROSITE:PS00925 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0005615 InterPro:IPR006041
            Pfam:PF01190 EMBL:BT030614 EMBL:AK175848 IPI:IPI00538774
            RefSeq:NP_568650.1 UniGene:At.27756 STRING:Q680L9 PaxDb:Q680L9
            PRIDE:Q680L9 EnsemblPlants:AT5G45880.1 GeneID:834628
            KEGG:ath:AT5G45880 TAIR:At5g45880 eggNOG:NOG306215
            HOGENOM:HOG000240768 InParanoid:Q680L9 OMA:HEEDICQ PhylomeDB:Q680L9
            ProtClustDB:CLSN2679677 ArrayExpress:Q680L9 Genevestigator:Q680L9
            Uniprot:Q680L9
        Length = 174

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 36/108 (33%), Positives = 62/108 (57%)

Query:     1 ATVALECKESEGGEVVYSREVVSDQSGTYKIPIEGCHAK-LCQVRLVKSPKPECSEIVAD 59
             A V LEC+    G +  ++E V+D++G+YK+ + G H + +C++ LV+SP   CS++  +
Sbjct:    61 AKVKLECRSRTNGTITLTKEAVTDKTGSYKMEVTGDHEEEVCELVLVQSPDSGCSDVSTE 120

Query:    60 GL--SSARIDLTPSVGSDPELIRYANDLGFMKKESLPECAKVLEEMFI 105
                 ++A+I LT + G      R  N LGFM +  L +C    +E+ I
Sbjct:   121 AYLRNAAKISLTANDGIVSHETRIVNPLGFMVQTPLADCPAAFKELGI 168


>TAIR|locus:505006434 [details] [associations]
            symbol:SAH7 "AT4G08685" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0006816 "calcium ion
            transport" evidence=RCA] [GO:0007030 "Golgi organization"
            evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
            [GO:0019344 "cysteine biosynthetic process" evidence=RCA]
            [GO:0042546 "cell wall biogenesis" evidence=RCA] EMBL:CP002687
            InterPro:IPR006041 Pfam:PF01190 UniGene:At.48833 UniGene:At.71122
            HOGENOM:HOG000240768 EMBL:AY074534 EMBL:AY114069 EMBL:AY085717
            EMBL:AK228554 EMBL:AJ133639 IPI:IPI00537198 RefSeq:NP_567338.1
            STRING:Q9SZY5 EnsemblPlants:AT4G08685.1 GeneID:826435
            KEGG:ath:AT4G08685 TAIR:At4g08685 InParanoid:Q9SZY5 OMA:HEHELCE
            PhylomeDB:Q9SZY5 ProtClustDB:CLSN2689379 ArrayExpress:Q9SZY5
            Genevestigator:Q9SZY5 Uniprot:Q9SZY5
        Length = 159

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 38/104 (36%), Positives = 60/104 (57%)

Query:     1 ATVALECKESEGGEVVYSREVVSDQSGTYKIPIEGCH-AKLCQVRLVKSPKPECSEIVAD 59
             A V LECK+    E+ YS E  +D +G+YKI +   H  + C   LV+S +  CS  V+ 
Sbjct:    53 AVVRLECKDRRTMELTYSHEARTDSTGSYKILVNEDHDEQFCDAMLVRSSQLRCSN-VSP 111

Query:    60 GLSSARIDLTP--SVGSDPELIRYANDLGFMKKESLPECAKVLE 101
             G   AR+ LT    + SD    R+AN++GF++  ++P CA +++
Sbjct:   112 GHDRARVTLTRFNGIASDD---RFANNMGFLRDAAMPGCADIMK 152


>TAIR|locus:505006496 [details] [associations]
            symbol:AT4G18596 "AT4G18596" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0005615 "extracellular
            space" evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR006040 PROSITE:PS00925 GO:GO:0005615 EMBL:CP002687
            InterPro:IPR006041 Pfam:PF01190 UniGene:At.27729
            ProtClustDB:CLSN2679677 EMBL:BT011668 EMBL:AK221500 IPI:IPI00541567
            RefSeq:NP_567562.1 UniGene:At.32885 STRING:Q6NMJ2 PRIDE:Q6NMJ2
            EnsemblPlants:AT4G18596.1 GeneID:827593 KEGG:ath:AT4G18596
            TAIR:At4g18596 InParanoid:Q6NMJ2 OMA:QEEICEV PhylomeDB:Q6NMJ2
            Genevestigator:Q6NMJ2 Uniprot:Q6NMJ2
        Length = 172

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 36/108 (33%), Positives = 61/108 (56%)

Query:     1 ATVALECKESEGGEVVYSREVVSDQSGTYKIPIEGCHAK-LCQVRLVKSPKPECSEIVAD 59
             A V LEC+    G V  ++E V+D++G+Y++ + G H + +C++ LV+SP   CS++  +
Sbjct:    59 AKVKLECRSRTNGTVTLTKEAVTDKTGSYRMEVTGDHEEEVCELVLVESPDSGCSDVSKE 118

Query:    60 GL--SSARIDLTPSVGSDPELIRYANDLGFMKKESLPECAKVLEEMFI 105
                 ++A+I LT + G      R  N LGFM +    EC    +E+ I
Sbjct:   119 AYLRNAAKISLTANDGIVSHETRIVNPLGFMVQTPSAECPAAFKELGI 166


>TAIR|locus:2029456 [details] [associations]
            symbol:AT1G78040 "AT1G78040" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0019344 "cysteine
            biosynthetic process" evidence=RCA] EMBL:CP002684
            InterPro:IPR010916 PROSITE:PS00430 InterPro:IPR006041 Pfam:PF01190
            HOGENOM:HOG000240768 UniGene:At.25076 EMBL:AY086214 EMBL:BT004592
            EMBL:AK227504 IPI:IPI00539016 RefSeq:NP_001077838.1
            RefSeq:NP_177927.1 UniGene:At.68115 STRING:Q8LD45 PRIDE:Q8LD45
            EnsemblPlants:AT1G78040.1 EnsemblPlants:AT1G78040.2 GeneID:844139
            KEGG:ath:AT1G78040 TAIR:At1g78040 OMA:DEICDVR PhylomeDB:Q8LD45
            ProtClustDB:CLSN2679479 Genevestigator:Q8LD45 Uniprot:Q8LD45
        Length = 171

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 38/106 (35%), Positives = 59/106 (55%)

Query:     1 ATVALECKESEGGEVVYSREVVSDQSGTYKIPIEGCHA-KLCQVRLVKSPKPECSEIVAD 59
             ATV L CK+ +  E VY+ + VSD+ G YK  +   H  ++C V LVKS    CS+I   
Sbjct:    57 ATVKLSCKDRKTMEEVYTDKAVSDKEGKYKFIVHDDHRDQMCDVLLVKSSDKTCSKISV- 115

Query:    60 GLSSARIDLTPSVGSDPELIRYANDLGFMKKESLPECAKVLEEMFI 105
             G   +R+ L    G   + IR+AN++GF K+ S   C+ + ++  +
Sbjct:   116 GREKSRVILNHYSGIASQ-IRHANNMGFEKEVSDVFCSALFQKYMV 160


>TAIR|locus:2184103 [details] [associations]
            symbol:AT5G10130 "AT5G10130" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0005615 "extracellular
            space" evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR006040 PROSITE:PS00925 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0005615 EMBL:AL356332
            InterPro:IPR006041 Pfam:PF01190 HOGENOM:HOG000240768 EMBL:BT010846
            EMBL:BT012613 IPI:IPI00527436 PIR:T50017 RefSeq:NP_196575.1
            UniGene:At.32413 PaxDb:Q9LX15 PRIDE:Q9LX15
            EnsemblPlants:AT5G10130.1 GeneID:830877 KEGG:ath:AT5G10130
            TAIR:At5g10130 eggNOG:NOG304723 OMA:GFETIAT PhylomeDB:Q9LX15
            ProtClustDB:CLSN2914900 Genevestigator:Q9LX15 Uniprot:Q9LX15
        Length = 164

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 35/109 (32%), Positives = 49/109 (44%)

Query:     1 ATVALECKESEGGEVVYSREVVSDQSGTYKIPIEGCHA-KLCQVRLVKSPKPECSEIVAD 59
             A V + CK+    +       V+   G YK+ + G    + C   LV SP   C E  AD
Sbjct:    54 ARVRIVCKDRVTLKSELVGVAVTGPDGKYKVAVRGDRQDQQCLAELVHSPLSRCQE--AD 111

Query:    60 -GLSSARIDLTPSVGSDPELIRYANDLGFMKKESLPECAKVLEEMFIHG 107
              G S+A + LT S G+      YAN +GF + E L  CA + +     G
Sbjct:   112 PGRSTATVILTRSNGA-ASTRHYANAMGFFRDEPLRGCAALRKRYLADG 159


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.133   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      107       107   0.00091  102 3  11 23  0.49    30
                                                     29  0.40    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  521 (55 KB)
  Total size of DFA:  111 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.54u 0.15s 12.69t   Elapsed:  00:00:01
  Total cpu time:  12.54u 0.15s 12.69t   Elapsed:  00:00:01
  Start:  Sat May 11 02:57:04 2013   End:  Sat May 11 02:57:05 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
