Query 045131
Match_columns 107
No_of_seqs 103 out of 128
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 17:50:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bp3_A Filamin A; structural p 78.2 3.6 0.00012 26.1 4.5 30 3-34 49-78 (97)
2 2ds4_A Tripartite motif protei 75.1 5.5 0.00019 25.4 4.8 30 3-34 65-94 (113)
3 2w0p_A Filamin-A; alternative 74.9 3.9 0.00013 25.8 4.0 30 3-34 46-75 (94)
4 2k9u_A Gamma filamin; cytoskel 72.1 6.6 0.00022 25.9 4.7 34 3-38 61-96 (119)
5 3rgh_A Filamin-A; cell adhesio 70.4 7.7 0.00026 24.8 4.6 30 3-34 53-82 (100)
6 2ee6_A Filamin-B; beta-sandwic 69.6 4.5 0.00015 26.1 3.3 30 3-34 54-83 (105)
7 2dia_A Filamin-B; beta-sandwic 68.5 9.2 0.00031 24.8 4.7 30 3-34 56-85 (113)
8 2di8_A Filamin-B; beta-sandwic 68.1 3.5 0.00012 27.1 2.6 30 3-34 54-83 (111)
9 2eea_A Filamin-B; beta-sandwic 67.7 5.1 0.00017 26.2 3.3 30 3-34 64-93 (115)
10 2dic_A Filamin-B; beta-sandwic 67.2 3.2 0.00011 26.9 2.2 29 4-34 55-83 (105)
11 2di9_A Filamin-B; beta-sandwic 65.9 8.6 0.00029 25.8 4.3 34 3-38 74-109 (131)
12 2e9j_A Filamin-B; beta-sandwic 65.4 13 0.00043 24.4 5.0 28 5-34 70-97 (119)
13 2d7o_A Filamin-C; beta-sandwic 63.7 4 0.00014 26.8 2.2 29 4-34 55-83 (111)
14 2eec_A Filamin-B; beta-sandwic 57.5 6.9 0.00024 26.3 2.6 29 3-34 64-92 (125)
15 3uaf_A TTR-52; beta barrel/san 57.3 6.5 0.00022 26.7 2.4 17 18-34 41-57 (117)
16 2nqc_A Filamin-C; immunoglobul 56.7 9.8 0.00034 26.2 3.3 29 3-34 88-116 (138)
17 4akz_A Type IV secretion syste 54.5 2.3 7.8E-05 28.7 -0.3 25 64-88 104-129 (138)
18 2dj4_A Filamin-B; beta-sandwic 53.8 11 0.00037 24.3 3.0 28 5-34 59-86 (108)
19 3cnk_A Filamin-A; FLNA24, X-RA 53.7 14 0.00047 22.8 3.4 19 16-34 55-73 (89)
20 1v05_A Filamin C; actin-bindin 53.5 21 0.00072 22.2 4.3 28 5-34 53-80 (96)
21 2k7p_A Filamin-A; IG-like, ABP 53.3 20 0.00069 25.3 4.6 29 4-34 141-169 (188)
22 2k7q_A Filamin-A; IG-like, ABP 52.2 20 0.00069 25.1 4.4 30 3-34 140-169 (191)
23 2cc3_A Protein VIRB8; secretio 51.5 3.7 0.00013 28.3 0.4 25 63-88 107-131 (150)
24 3e8v_A Possible transglutamina 50.7 36 0.0012 21.9 5.1 31 1-33 18-48 (82)
25 1xkp_C Chaperone protein YSCB; 50.0 5.3 0.00018 28.6 1.0 30 22-51 18-50 (143)
26 2bhm_A Type IV secretion syste 47.3 4 0.00014 28.2 0.0 26 63-88 124-150 (164)
27 2dmb_A Filamin-B; beta-sandwic 47.3 16 0.00053 24.4 3.0 27 6-34 60-86 (124)
28 2j3s_A Filamin-A; cytoskeleton 46.7 32 0.0011 25.6 5.0 30 3-34 240-269 (288)
29 3kcp_A Cellulosomal-scaffoldin 45.8 10 0.00035 30.2 2.2 15 20-34 192-207 (321)
30 2j3s_A Filamin-A; cytoskeleton 45.5 27 0.00093 26.0 4.5 30 3-34 49-78 (288)
31 2d7m_A Filamin-C; beta-sandwic 45.2 18 0.00061 23.5 3.0 27 6-34 61-87 (115)
32 2d7n_A Filamin-C; beta-sandwic 38.7 36 0.0012 21.7 3.6 19 16-34 47-65 (93)
33 1miu_A BRCA2, breast cancer ty 37.8 10 0.00036 33.3 1.1 59 26-90 267-341 (738)
34 4ank_A Transthyretin; hormone 36.3 48 0.0016 23.3 4.2 28 2-30 49-76 (147)
35 2hbp_A Cytoskeleton assembly c 33.6 12 0.00039 23.7 0.6 13 21-33 7-19 (68)
36 2di7_A BK158_1; beta-sandwich, 30.6 13 0.00045 25.3 0.5 30 3-34 73-103 (124)
37 2kyw_A Adhesion exoprotein; st 29.7 61 0.0021 21.0 3.5 56 18-74 24-80 (87)
38 1qfh_A Protein (gelation facto 26.8 1.1E+02 0.0036 21.5 4.8 19 16-34 159-177 (212)
39 2dib_A Filamin-B; beta-sandwic 26.6 50 0.0017 21.5 2.8 20 16-35 82-101 (128)
40 3irp_X URO-adherence factor A; 26.6 81 0.0028 25.5 4.6 27 1-32 332-358 (429)
41 1wlh_A Gelation factor; ABP-12 26.5 34 0.0012 25.5 2.2 34 3-38 55-90 (311)
42 1qfh_A Protein (gelation facto 25.5 79 0.0027 22.2 4.0 29 4-34 59-87 (212)
43 3iwv_A 5-hydroxyisourate hydro 25.2 93 0.0032 21.7 4.1 28 2-29 45-72 (138)
44 4b7l_A Filamin-B; structural p 24.1 84 0.0029 24.4 4.2 19 16-34 314-332 (347)
45 2dlg_A Filamin-B; beta-sandwic 23.4 60 0.0021 20.9 2.7 22 13-34 53-74 (102)
46 2d7p_A Filamin-C; beta-sandwic 22.4 56 0.0019 21.2 2.4 22 13-34 63-84 (112)
47 3sd2_A Putative member of DUF3 21.0 1.8E+02 0.0062 19.3 4.7 18 2-19 46-63 (101)
No 1
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=78.21 E-value=3.6 Score=26.07 Aligned_cols=30 Identities=20% Similarity=0.491 Sum_probs=23.0
Q ss_pred EEEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 3 VALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
+.++|.+...| +|.+.-+-.+.|.|.|.|.
T Consensus 49 ~~~~v~d~~dG--ty~v~Y~p~~~G~y~i~V~ 78 (97)
T 2bp3_A 49 AEISCTDNQDG--TCSVSYLPVLPGDYSILVK 78 (97)
T ss_dssp CEEEEEECSSS--EEEEEEECSSCEEEEEEEE
T ss_pred CEEEEEECCCC--EEEEEEEeCCCCcEEEEEE
Confidence 45678886555 7777777888899998877
No 2
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.05 E-value=5.5 Score=25.37 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=18.9
Q ss_pred EEEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 3 VALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
|.+++.|...| +|.+.-+-.+.|.|.|.|.
T Consensus 65 ~~~~v~D~~dG--ty~v~y~p~~~G~y~i~V~ 94 (113)
T 2ds4_A 65 VRTMVQDNKDG--TYYISYTPKEPGVYTVWVC 94 (113)
T ss_dssp CEEEEECCSSS--EEEEEEECSSSEEEEEEEE
T ss_pred eEEEEEECCCC--EEEEEEEeCCCeEEEEEEE
Confidence 34556665444 6666666677777777765
No 3
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A
Probab=74.95 E-value=3.9 Score=25.79 Aligned_cols=30 Identities=13% Similarity=0.429 Sum_probs=21.4
Q ss_pred EEEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 3 VALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
+.++|+|...| +|.+.-+-.+.|.|.|.|.
T Consensus 46 ~~~~v~d~~dG--ty~v~Y~p~~~G~y~I~V~ 75 (94)
T 2w0p_A 46 AEISFEDRKDG--SCGVAYVVQEPGDYEVSVK 75 (94)
T ss_dssp CEEEEEECTTS--CEEEEEECSSCEEEEEEEE
T ss_pred CeEEEEECCCC--EEEEEEEECCCceEEEEEE
Confidence 45677776555 5667777778888888876
No 4
>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=72.12 E-value=6.6 Score=25.89 Aligned_cols=34 Identities=18% Similarity=0.410 Sum_probs=25.2
Q ss_pred EEEEeecCCCCceEEEEEEEcCCCeeEEEEec--CCCc
Q 045131 3 VALECKESEGGEVVYSREVVSDQSGTYKIPIE--GCHA 38 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~--~dh~ 38 (107)
+.++|.|...| +|.+.-+-.+.|.|.|.|. +.|.
T Consensus 61 ~~~~v~d~~dG--ty~v~Y~p~~~G~y~I~V~~~g~~I 96 (119)
T 2k9u_A 61 AEIAFEDRKDG--SCGVSYVVQEPGDYEVSIKFNDEHI 96 (119)
T ss_dssp CEEEEECCSSS--EEEEEEECCSSEEEEEEEEETSCBC
T ss_pred CeEEEEECCCC--EEEEEEEECCCceEEEEEEECCEEC
Confidence 45678876555 7777778888999999877 4554
No 5
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=70.42 E-value=7.7 Score=24.81 Aligned_cols=30 Identities=13% Similarity=0.276 Sum_probs=19.3
Q ss_pred EEEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 3 VALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
|.++++|...| +|.+.-+-.+.|.|.|.|.
T Consensus 53 ~~~~v~d~~dG--ty~V~Y~p~~~G~y~i~V~ 82 (100)
T 3rgh_A 53 AEVYIQDHGDG--THTITYIPLCPGAYTVTIK 82 (100)
T ss_dssp CEEEEEECSSS--EEEEEEECCSSEEEEEEEE
T ss_pred eEEEEEeCCCC--EEEEEEEeCCCeeEEEEEE
Confidence 44555665444 6666666777777777765
No 6
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.57 E-value=4.5 Score=26.10 Aligned_cols=30 Identities=13% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 3 VALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
+.++|.|...| +|.+.-+-.+.|.|.|.|.
T Consensus 54 ~~v~v~d~~dG--ty~v~Y~p~~~G~y~I~V~ 83 (105)
T 2ee6_A 54 AEITFDDHKNG--SCGVSYIAQEPGNYEVSIK 83 (105)
T ss_dssp EEEEECCCCSS--CCCEEEEESSCEEEEEEEE
T ss_pred CEEEEEECCCC--EEEEEEEECCCceEEEEEE
Confidence 45677776555 4555555667799998877
No 7
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=68.47 E-value=9.2 Score=24.81 Aligned_cols=30 Identities=17% Similarity=0.438 Sum_probs=21.2
Q ss_pred EEEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 3 VALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
|.++++|...| +|.+.-+-.+.|.|.|.|.
T Consensus 56 ~~~~v~d~~dG--ty~v~Y~p~~~G~y~i~V~ 85 (113)
T 2dia_A 56 AEVSIQNNKDG--TYAVTYVPLTAGMYTLTMK 85 (113)
T ss_dssp CEEEEEECTTS--EEEEEEECSSCEEEEEEEE
T ss_pred eeEEEEECCCC--EEEEEEEeCCCccEEEEEE
Confidence 44556665444 7777777888888888877
No 8
>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=68.05 E-value=3.5 Score=27.07 Aligned_cols=30 Identities=17% Similarity=0.354 Sum_probs=22.3
Q ss_pred EEEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 3 VALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
|.++|.|...| +|.+.-+-.+.|.|.|.|.
T Consensus 54 ~~~~v~d~~dG--ty~v~Y~p~~~G~y~I~V~ 83 (111)
T 2di8_A 54 VDIQTEDLEDG--TCKVSYFPTVPGVYIVSTK 83 (111)
T ss_dssp CCEECCBCTTS--CEEEEECCCSCSEEEEEEE
T ss_pred ceEEEEECCCC--EEEEEEEeCCCeEEEEEEE
Confidence 45678876555 6777777788899998877
No 9
>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.72 E-value=5.1 Score=26.23 Aligned_cols=30 Identities=17% Similarity=0.482 Sum_probs=21.5
Q ss_pred EEEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 3 VALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
+.++|.|...| +|.+.-+-.+.|.|.|.|.
T Consensus 64 ~~~~v~d~~dG--ty~v~Y~p~~~G~y~I~V~ 93 (115)
T 2eea_A 64 AEISCIDNKDG--TCTVTYLPTLPGDYSILVK 93 (115)
T ss_dssp CEECCBCCSSS--EEEEEEECSSCSCEEEEEE
T ss_pred ceEEEEECCCC--EEEEEEEeCCCeeEEEEEE
Confidence 34567776555 6777777788888888876
No 10
>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=67.21 E-value=3.2 Score=26.86 Aligned_cols=29 Identities=24% Similarity=0.596 Sum_probs=20.2
Q ss_pred EEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 4 ALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 4 ~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
.++|++...| +|.+.-+-.+.|.|.|.|.
T Consensus 55 ~~~v~d~~dG--ty~v~Y~p~~~G~y~I~V~ 83 (105)
T 2dic_A 55 KINCRDNKDG--SCSAEYIPFAPGDYDVNIT 83 (105)
T ss_dssp CCEEEECSSS--CEEEEECCSSCEEEEEEEE
T ss_pred eEEEEECCCC--eEEEEEEeCCCeEEEEEEE
Confidence 4567775545 5666666777888888876
No 11
>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=65.86 E-value=8.6 Score=25.83 Aligned_cols=34 Identities=24% Similarity=0.480 Sum_probs=24.9
Q ss_pred EEEEeecCCCCceEEEEEEEcCCCeeEEEEec--CCCc
Q 045131 3 VALECKESEGGEVVYSREVVSDQSGTYKIPIE--GCHA 38 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~--~dh~ 38 (107)
+.++|+|...| +|.+.-+-.+.|.|.|.|. +.|.
T Consensus 74 ~~~~v~d~~dG--ty~v~Y~p~~~G~y~I~V~~~g~~I 109 (131)
T 2di9_A 74 AKIECSDNGDG--TCSVSYLPTKPGEYFVNILFEEVHI 109 (131)
T ss_dssp CEEEEEECSSS--EEEEEEECSSSSEEEEEEEESSCBC
T ss_pred ceEEEEECCCC--EEEEEEEeCCCeeEEEEEEECCEEC
Confidence 45678876555 7777788888899998877 4453
No 12
>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.41 E-value=13 Score=24.40 Aligned_cols=28 Identities=21% Similarity=0.516 Sum_probs=18.8
Q ss_pred EEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 5 LECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 5 leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
++..+...| +|.+.-+-.+.|.|.|.|.
T Consensus 70 ~~v~d~~dG--ty~v~Y~p~~~G~y~i~V~ 97 (119)
T 2e9j_A 70 AIVHDNKDG--TYAVTYIPDKTGRYMIGVT 97 (119)
T ss_dssp EEEEECCSS--EEEEEECCCSCSEEEECCE
T ss_pred EEEEECCCC--EEEEEEEeCCCEEEEEEEE
Confidence 444554334 6777777788888888766
No 13
>2d7o_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=63.73 E-value=4 Score=26.75 Aligned_cols=29 Identities=21% Similarity=0.562 Sum_probs=22.5
Q ss_pred EEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 4 ALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 4 ~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
.++|.|...| +|.+.-+-.+.|.|.|.|.
T Consensus 55 ~~~v~d~~dG--ty~V~Y~p~~~G~y~I~V~ 83 (111)
T 2d7o_A 55 EITCKDNKDG--TCTVSYLPTAPGDYSIIVR 83 (111)
T ss_dssp CBCCCCCSSS--EEEEEECCSSCEEEEEECB
T ss_pred eEEEEECCCC--EEEEEEEeCCCeEEEEEEE
Confidence 4577776555 7888888888899999987
No 14
>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.53 E-value=6.9 Score=26.31 Aligned_cols=29 Identities=28% Similarity=0.619 Sum_probs=20.0
Q ss_pred EEEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 3 VALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
+.++|.+...| |.+.-+-.+.|.|.|.|.
T Consensus 64 ~~~~~~d~~dG---y~V~Y~P~~~G~y~I~V~ 92 (125)
T 2eec_A 64 VKMDCQETPEG---YKVMYTPMAPGNYLISVK 92 (125)
T ss_dssp CCCEEEECSSS---EEEEECCSSCEEEEEEEE
T ss_pred CcceeEECCCC---EEEEEEcCCCeEEEEEEE
Confidence 34567775444 666777778888888876
No 15
>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}
Probab=57.32 E-value=6.5 Score=26.72 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=14.1
Q ss_pred EEEEEcCCCeeEEEEec
Q 045131 18 SREVVSDQSGTYKIPIE 34 (107)
Q Consensus 18 ~~e~~TD~~G~y~i~v~ 34 (107)
-.++.||++|.|.|.=.
T Consensus 41 l~~~~Td~~G~F~l~G~ 57 (117)
T 3uaf_A 41 MGRTWSDRNGNFQVTGC 57 (117)
T ss_dssp EEEEECCTTSEEEEEEE
T ss_pred heeeEECCCCEEEEEEE
Confidence 35789999999999844
No 16
>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A
Probab=56.70 E-value=9.8 Score=26.20 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=18.7
Q ss_pred EEEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 3 VALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
+.++|.+...| |.+.-+--+.|.|.|.|.
T Consensus 88 ~~~~~~d~~dG---y~V~YtP~~~G~y~I~Vk 116 (138)
T 2nqc_A 88 VQLDCRECPEG---HVVTYTPMAPGNYLIAIK 116 (138)
T ss_dssp CEEEEEEETTE---EEEEEECCSCEEEEEEEE
T ss_pred CeeeEEECCCc---EEEEEEcCCCEEEEEEEE
Confidence 35566664333 666666777777777766
No 17
>4akz_A Type IV secretion system protein VIRB8; transport protein; 2.25A {Brucella suis} PDB: 4aky_A
Probab=54.49 E-value=2.3 Score=28.74 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=15.0
Q ss_pred eeEEeecCC-CCCCCceeeecCCCcc
Q 045131 64 ARIDLTPSV-GSDPELIRYANDLGFM 88 (107)
Q Consensus 64 a~V~Lt~nn-Gi~s~~~R~aN~lgF~ 88 (107)
|.|.....+ -+.++..|..|||||.
T Consensus 104 atlty~y~~~~~~~e~~r~~NPlGF~ 129 (138)
T 4akz_A 104 ATIGYQYVNPSLMSESARLTNPLGFN 129 (138)
T ss_dssp EEEEEEECCGGGSCHHHHTTCTTCEE
T ss_pred EEEEEEEecCCCCCHHHHhhCCCceE
Confidence 444443322 3334357999999996
No 18
>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=53.83 E-value=11 Score=24.29 Aligned_cols=28 Identities=14% Similarity=0.374 Sum_probs=18.7
Q ss_pred EEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 5 LECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 5 leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
+++.|...| +|.+.-+-.+.|.|.|.|.
T Consensus 59 ~~v~d~~dG--ty~v~Y~p~~~G~y~i~V~ 86 (108)
T 2dj4_A 59 VNVVDNGDG--THTVTYTPSQEGPYMVSVK 86 (108)
T ss_dssp CCCEECSSS--EEEEEECCSSCEEEEEEEE
T ss_pred eEEEECCCC--EEEEEEEeCCCeeEEEEEE
Confidence 344554334 6777777778888888876
No 19
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}
Probab=53.71 E-value=14 Score=22.79 Aligned_cols=19 Identities=21% Similarity=0.524 Sum_probs=11.5
Q ss_pred EEEEEEEcCCCeeEEEEec
Q 045131 16 VYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 16 ~~~~e~~TD~~G~y~i~v~ 34 (107)
+|.+.-+-.+.|.|.|.|.
T Consensus 55 ty~v~Y~p~~~G~y~i~V~ 73 (89)
T 3cnk_A 55 LYSVSYLLKDKGEYTLVVK 73 (89)
T ss_dssp EEEEEEECCSCEEEEEEEE
T ss_pred EEEEEEEECCCccEEEEEE
Confidence 5555555666666666655
No 20
>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A
Probab=53.53 E-value=21 Score=22.21 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=18.0
Q ss_pred EEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 5 LECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 5 leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
+++++...| +|.+.-+-.+.|.|.|.|.
T Consensus 53 ~~v~d~~dG--ty~v~Y~p~~~G~y~i~V~ 80 (96)
T 1v05_A 53 VYVKHMGNR--VYNVTYTVKEKGDYILIVK 80 (96)
T ss_dssp EEEEECSTT--EEEEEEECSSCEEEEEEEE
T ss_pred EEEEeCCCC--EEEEEEEeCCCEEEEEEEE
Confidence 344554444 6666667777788887766
No 21
>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}
Probab=53.34 E-value=20 Score=25.26 Aligned_cols=29 Identities=21% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 4 ALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 4 ~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
.++|.+...| +|.+.-+-...|.|.|.|.
T Consensus 141 ~~~~~d~~dG--ty~v~Y~p~~~G~y~i~V~ 169 (188)
T 2k7p_A 141 EISCTDNQDG--TCSVSYLPVLPGDYSILVK 169 (188)
T ss_dssp EEEEEECTTS--EEEEEEECCSSEEEEEEEE
T ss_pred eEEEEECCCC--EEEEEEEeCCCEEEEEEEE
Confidence 4567776555 6666667777788888876
No 22
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}
Probab=52.22 E-value=20 Score=25.11 Aligned_cols=30 Identities=23% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 3 VALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
+.++|.+...| +|.+.-+-.+.|.|.|.|.
T Consensus 140 ~~~~v~d~~dG--ty~v~Y~p~~~G~y~i~V~ 169 (191)
T 2k7q_A 140 VDINTEDLEDG--TCRVTYCPTEPGNYIINIK 169 (191)
T ss_dssp EEEEEEECTTS--CEEEEEEESSCEEEEEEEE
T ss_pred ceEEEEECCCC--EEEEEEEeCCCceEEEEEE
Confidence 45677776555 3444555566788888776
No 23
>2cc3_A Protein VIRB8; secretion system, type IV secretion system, consurf; 2.2A {Agrobacterium tumefaciens} SCOP: d.17.4.26
Probab=51.49 E-value=3.7 Score=28.25 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=16.2
Q ss_pred eeeEEeecCCCCCCCceeeecCCCcc
Q 045131 63 SARIDLTPSVGSDPELIRYANDLGFM 88 (107)
Q Consensus 63 ~a~V~Lt~nnGi~s~~~R~aN~lgF~ 88 (107)
.|.|...-.+-+.. ..|..|||||.
T Consensus 107 ~Atvt~~~~~~~~~-~~r~~NPlGf~ 131 (150)
T 2cc3_A 107 TATVRYEKVTSLPG-RLRLTNPGGLV 131 (150)
T ss_dssp EEEEEEEECSCCCH-HHHTTCTTCEE
T ss_pred EEEEEEEecCCCCH-HHHhhCCCceE
Confidence 56564433222544 68999999996
No 24
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=50.73 E-value=36 Score=21.89 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=20.2
Q ss_pred CeEEEEeecCCCCceEEEEEEEcCCCeeEEEEe
Q 045131 1 ATVALECKESEGGEVVYSREVVSDQSGTYKIPI 33 (107)
Q Consensus 1 A~V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v 33 (107)
|+|.++=-|. .+.--...-.||++|.+.+..
T Consensus 18 A~Vefe~yNy--ae~~~~~~~~TD~~G~~s~~~ 48 (82)
T 3e8v_A 18 ATVEFKVYNY--AEFYTVATKHTDRSGHASLTA 48 (82)
T ss_dssp CEEEEEEEET--TEEEEEEEEECCTTSEEEEEC
T ss_pred CEEEEEEEEc--hheeEEEEEEECCCceEEEEE
Confidence 4555555553 222234567899999999987
No 25
>1xkp_C Chaperone protein YSCB; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: d.198.1.1
Probab=49.99 E-value=5.3 Score=28.57 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=20.7
Q ss_pred EcCCCeeEEEEecCCCc---ceeEEEEeeCCCc
Q 045131 22 VSDQSGTYKIPIEGCHA---KLCQVRLVKSPKP 51 (107)
Q Consensus 22 ~TD~~G~y~i~v~~dh~---~~C~V~LvsSP~~ 51 (107)
+-|.+|.|.|+||+.-- +-=.-.|.+||.+
T Consensus 18 VAd~qG~Y~l~iD~~~L~l~qq~sellleTpL~ 50 (143)
T 1xkp_C 18 VADXQGVYRLTIDXHLVMLAPHGSELVLRTPID 50 (143)
T ss_dssp CCCTTSCEEEEETTEEEEEEEETTEEEEEEECC
T ss_pred cccCCCceEEEeeeeEEEeeccCCEEEEeccCc
Confidence 57999999999998632 2223345666664
No 26
>2bhm_A Type IV secretion system protein VIRB8; bacterial protein, bacterial type IV secretion; 2.4A {Brucella melitensis biovar suis} SCOP: d.17.4.26
Probab=47.34 E-value=4 Score=28.21 Aligned_cols=26 Identities=35% Similarity=0.267 Sum_probs=15.6
Q ss_pred eeeEEeecCCCC-CCCceeeecCCCcc
Q 045131 63 SARIDLTPSVGS-DPELIRYANDLGFM 88 (107)
Q Consensus 63 ~a~V~Lt~nnGi-~s~~~R~aN~lgF~ 88 (107)
.|.|...-.+-. .++..|..|||||.
T Consensus 124 ~Atvt~~~~~~~~~~~~~~~~NPlGf~ 150 (164)
T 2bhm_A 124 IATIGYQYVNPSLMSESARLTNPLGFN 150 (164)
T ss_dssp EEEEEEEECCGGGSCHHHHTTCTTCEE
T ss_pred EEEEEEEeCCCccCCHHHHhhCCCceE
Confidence 455544433222 23267999999996
No 27
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=47.27 E-value=16 Score=24.44 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=18.1
Q ss_pred EeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 6 ECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 6 eCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
+..+...| +|.+.-+-.+.|.|.|.|.
T Consensus 60 ~v~d~~dG--ty~V~Y~p~~~G~y~I~V~ 86 (124)
T 2dmb_A 60 DVIENEDG--TYDIFYTAAKPGTYVIYVR 86 (124)
T ss_dssp EEEECTTS--CEEEEEECSSCEEEEEEEE
T ss_pred EEEeCCCC--EEEEEEEcCCCEEEEEEEE
Confidence 44444334 5777777778888888876
No 28
>2j3s_A Filamin-A; cytoskeleton, phosphorylation, structural protein; 2.5A {Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB: 2e9i_A
Probab=46.71 E-value=32 Score=25.58 Aligned_cols=30 Identities=13% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 3 VALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
+.++|.|+..| +|.+.-+-.+.|.|.|.|.
T Consensus 240 ~~~~~~d~~dG--t~~v~y~p~~~G~y~i~V~ 269 (288)
T 2j3s_A 240 AEISFEDRKDG--SCGVAYVVQEPGDYEVSVK 269 (288)
T ss_dssp EEEEEEECTTS--EEEEEEEESSCEEEEEEEE
T ss_pred cceeEEECCCC--EEEEEEEcCCCeeEEEEEE
Confidence 45677776666 5556666677788888876
No 29
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B
Probab=45.75 E-value=10 Score=30.24 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=12.7
Q ss_pred EEEcCCCeeEEEE-ec
Q 045131 20 EVVSDQSGTYKIP-IE 34 (107)
Q Consensus 20 e~~TD~~G~y~i~-v~ 34 (107)
.++||++|+|.|. |+
T Consensus 192 sa~tD~~G~f~I~~vp 207 (321)
T 3kcp_A 192 YAVTDANGYFEITGVP 207 (321)
T ss_dssp EEECCTTSEEEEEEEC
T ss_pred eeEECCCceEEEeccC
Confidence 7899999999985 44
No 30
>2j3s_A Filamin-A; cytoskeleton, phosphorylation, structural protein; 2.5A {Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB: 2e9i_A
Probab=45.54 E-value=27 Score=25.98 Aligned_cols=30 Identities=23% Similarity=0.425 Sum_probs=24.2
Q ss_pred EEEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 3 VALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
|.++|.|...| +|.+.-+-.+.|.|.|.|.
T Consensus 49 ~~~~~~d~~dG--ty~v~y~p~~~G~y~i~V~ 78 (288)
T 2j3s_A 49 VDINTEDLEDG--TCRVTYCPTEPGNYIINIK 78 (288)
T ss_dssp CEEEEEECTTS--EEEEEEECSSCEEEEEEEE
T ss_pred ceeEEEECCCC--EEEEEEECCCCeEEEEEEE
Confidence 56788886555 7788888889999999987
No 31
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=45.19 E-value=18 Score=23.46 Aligned_cols=27 Identities=30% Similarity=0.619 Sum_probs=17.5
Q ss_pred EeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 6 ECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 6 eCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
+.+|...| +|.+.-+-.+.|.|.|.|.
T Consensus 61 ~v~d~~dG--ty~v~Y~p~~~G~y~i~V~ 87 (115)
T 2d7m_A 61 NIRDNGDG--TYTVSYLPDMSGRYTITIK 87 (115)
T ss_dssp EEEECSSS--CEEEEECCCSCEEEEEEEE
T ss_pred EEEECCCC--EEEEEEEeCCCceEEEEEE
Confidence 34443333 6777777777888887766
No 32
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=38.65 E-value=36 Score=21.69 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=13.5
Q ss_pred EEEEEEEcCCCeeEEEEec
Q 045131 16 VYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 16 ~~~~e~~TD~~G~y~i~v~ 34 (107)
+|.+.-+-.+.|.|.|.|.
T Consensus 47 tY~v~ytP~e~G~h~v~V~ 65 (93)
T 2d7n_A 47 TITVRYAPTEKGLHQMGIK 65 (93)
T ss_dssp CEEEEECCSSCEEEEEEEE
T ss_pred EEEEEEEccCCEEEEEEEE
Confidence 5777777777777776655
No 33
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=37.83 E-value=10 Score=33.32 Aligned_cols=59 Identities=24% Similarity=0.407 Sum_probs=40.8
Q ss_pred CeeEEEEecCC---------------Cc-ceeEEEEeeCCCccCcccccCCCceeeEEeecCCCCCCCceeeecCCCccc
Q 045131 26 SGTYKIPIEGC---------------HA-KLCQVRLVKSPKPECSEIVADGLSSARIDLTPSVGSDPELIRYANDLGFMK 89 (107)
Q Consensus 26 ~G~y~i~v~~d---------------h~-~~C~V~LvsSP~~~C~~~~~~~r~~a~V~Lt~nnGi~s~~~R~aN~lgF~~ 89 (107)
+|||.|...-| +. -+|-+.|+.|++ .|.-+.. .+...+.| +-|++. ..|..-.|||.+
T Consensus 267 DGWY~IkA~lD~~L~~~l~~GkI~vGqKL~I~GA~L~g~~~-~~~PLEa--~~s~~L~L-~~NsTR--rA~W~~kLGf~~ 340 (738)
T 1miu_A 267 DGWYAVRAQLDPPLMALVKSGKLTVGQKIITQGAELVGSPD-ACAPLEA--PDSLRLKI-SANSTR--PARWHSRLGFFR 340 (738)
T ss_dssp CSSCEECCCCCHHHHHHHHTTCSCSSCBCCCSSBCEESCCS-CCCTTSC--CSSCEECC-CGGGCC--CBCSSCCSEECS
T ss_pred cCcEEEEEEeCHHHHHHHHcCCccCCceEEEECceeccCCC-CCCCccC--CCceEEEE-eeccEe--ccccccccCccc
Confidence 69999986543 23 899999999874 4766654 22333344 557764 377788999998
Q ss_pred c
Q 045131 90 K 90 (107)
Q Consensus 90 ~ 90 (107)
+
T Consensus 341 ~ 341 (738)
T 1miu_A 341 D 341 (738)
T ss_dssp C
T ss_pred C
Confidence 7
No 34
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=36.33 E-value=48 Score=23.34 Aligned_cols=28 Identities=14% Similarity=-0.005 Sum_probs=20.5
Q ss_pred eEEEEeecCCCCceEEEEEEEcCCCeeEE
Q 045131 2 TVALECKESEGGEVVYSREVVSDQSGTYK 30 (107)
Q Consensus 2 ~V~leCk~~~~~~v~~~~e~~TD~~G~y~ 30 (107)
.|+|.=.+ ..++-+.-.+++||++|.-.
T Consensus 49 ~V~L~~~~-~~~~~~~l~~~~Td~DGR~~ 76 (147)
T 4ank_A 49 AVHVFRKA-ADDTWEPFASGKTSESGELH 76 (147)
T ss_dssp EEEEEEEC-TTSCEEEEEEEECCTTSEEC
T ss_pred EEEEEEEC-CCCCeEEEEEEEeCCCCCCC
Confidence 46666555 45667778899999999864
No 35
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=33.64 E-value=12 Score=23.66 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=11.0
Q ss_pred EEcCCCeeEEEEe
Q 045131 21 VVSDQSGTYKIPI 33 (107)
Q Consensus 21 ~~TD~~G~y~i~v 33 (107)
-.||.+|.|+|+-
T Consensus 7 tWtDrtG~F~VeA 19 (68)
T 2hbp_A 7 LWVDRSGTFKVDA 19 (68)
T ss_dssp EEEBSSSCCEEEE
T ss_pred EEEcCCCCeEEEE
Confidence 3799999999974
No 36
>2di7_A BK158_1; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.57 E-value=13 Score=25.25 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=15.9
Q ss_pred EEEEeecCCCCceEEEEEE-EcCCCeeEEEEec
Q 045131 3 VALECKESEGGEVVYSREV-VSDQSGTYKIPIE 34 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~-~TD~~G~y~i~v~ 34 (107)
|.++|.|+..| +|.+.- .-..-|.|.|.|.
T Consensus 73 i~~~v~Dn~DG--sy~v~Yr~~~~~g~~~I~V~ 103 (124)
T 2di7_A 73 VGVQVLDRKDG--SFIVRYRMYASYKNLKVEIK 103 (124)
T ss_dssp CCCEEECCSSS--CCEEECCCCSCCSCCEEEEE
T ss_pred eeeEEEECCCC--eEEEEEECCCCCCCEEEEEE
Confidence 44566665444 444444 2344566666655
No 37
>2kyw_A Adhesion exoprotein; structural genomics, northeast structural genomics consortiu GFT, PSI-2, protein structure initiative; NMR {Pediococcus pentosaceus}
Probab=29.69 E-value=61 Score=21.00 Aligned_cols=56 Identities=18% Similarity=0.083 Sum_probs=35.2
Q ss_pred EEEEEcCCCeeEEEEecCCCc-ceeEEEEeeCCCccCcccccCCCceeeEEeecCCCC
Q 045131 18 SREVVSDQSGTYKIPIEGCHA-KLCQVRLVKSPKPECSEIVADGLSSARIDLTPSVGS 74 (107)
Q Consensus 18 ~~e~~TD~~G~y~i~v~~dh~-~~C~V~LvsSP~~~C~~~~~~~r~~a~V~Lt~nnGi 74 (107)
++.|+||++=.+.|++|+-.+ -.=.--.|||.-..-.+.-. ..++..|.+.-..|+
T Consensus 24 tvsGKTDEtVk~~i~iPdgYE~Vggd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (87)
T 2kyw_A 24 TVTGKTDDSTTYTVTIPDGYEYVGTDGGVVSSDGKTVTITFA-ADDSDNVVIHLKHGL 80 (87)
T ss_dssp EEEECTTCEEEEECCCCTTEEEEEEESSEECTTSSEEEEECC-SSSCCCEEEEEEECC
T ss_pred EEecccCCeeeeccccCCCceEEcCCCCEEecCCCEEEEEEe-ecCCCCEEEEeecCc
Confidence 789999999999999996554 22233356664443333333 455666666555555
No 38
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin, ABP- 120; 2.20A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10
Probab=26.76 E-value=1.1e+02 Score=21.50 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=9.4
Q ss_pred EEEEEEEcCCCeeEEEEec
Q 045131 16 VYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 16 ~~~~e~~TD~~G~y~i~v~ 34 (107)
+|.+.-+-...|.|.|.|.
T Consensus 159 ty~v~y~p~~~G~y~v~V~ 177 (212)
T 1qfh_A 159 TYTAAYSLVGNGRFSTGVK 177 (212)
T ss_dssp EEEEEEEEESSEEEEEEEE
T ss_pred EEEEEEEcCCCEEEEEEEE
Confidence 4444444455555555544
No 39
>2dib_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=26.60 E-value=50 Score=21.53 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=15.6
Q ss_pred EEEEEEEcCCCeeEEEEecC
Q 045131 16 VYSREVVSDQSGTYKIPIEG 35 (107)
Q Consensus 16 ~~~~e~~TD~~G~y~i~v~~ 35 (107)
+|.+.-+--+.|.|.|.|.-
T Consensus 82 ty~v~Y~p~~~G~~~i~V~~ 101 (128)
T 2dib_A 82 TYQVEYTPFEKGLHVVEVTY 101 (128)
T ss_dssp EEEEEECCSSCSEEEEEEBS
T ss_pred EEEEEEEeCCCEeEEEEEEE
Confidence 77777778888888888774
No 40
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X
Probab=26.57 E-value=81 Score=25.54 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=19.6
Q ss_pred CeEEEEeecCCCCceEEEEEEEcCCCeeEEEE
Q 045131 1 ATVALECKESEGGEVVYSREVVSDQSGTYKIP 32 (107)
Q Consensus 1 A~V~leCk~~~~~~v~~~~e~~TD~~G~y~i~ 32 (107)
|+|.|. + .+|.+. ...+||++|.|.+.
T Consensus 332 v~v~L~--d-~~G~~v--~tttTd~~G~Y~F~ 358 (429)
T 3irp_X 332 ITVNLL--D-PTGIRL--ATTTTDITGHYNFD 358 (429)
T ss_dssp CEEEEE--C-TTSCEE--EEEECCTTSEEEEE
T ss_pred eEEEEE--c-CCCCEE--EEEEeCCCCeEEeC
Confidence 456664 5 356654 67899999999966
No 41
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain, structural protein; 2.80A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A
Probab=26.55 E-value=34 Score=25.48 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=24.2
Q ss_pred EEEEeecCCCCceEEEEEEEcCCCeeEEEEec--CCCc
Q 045131 3 VALECKESEGGEVVYSREVVSDQSGTYKIPIE--GCHA 38 (107)
Q Consensus 3 V~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~--~dh~ 38 (107)
+.++|.+...| +|.++-+-.+.|.|.|.|. +.|.
T Consensus 55 ~~~~~~d~~dG--~y~v~y~p~~~G~~~i~v~~~~~~i 90 (311)
T 1wlh_A 55 VDPVMVDNGDG--TYDVEFEPKEAGDYVINLTLDGDNV 90 (311)
T ss_dssp CCCBCCCCSSS--EEEEEECCCSCSEEEEEEEESSSBC
T ss_pred cEEEEEECCCC--EEEEEEEccCccceEEEEEECCEEC
Confidence 34567765555 7788888888999998876 5554
No 42
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin, ABP- 120; 2.20A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10
Probab=25.52 E-value=79 Score=22.16 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=20.5
Q ss_pred EEEeecCCCCceEEEEEEEcCCCeeEEEEec
Q 045131 4 ALECKESEGGEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 4 ~leCk~~~~~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
..++.+...| +|.+.-+-.+.|.|.|.|.
T Consensus 59 ~~~v~d~~dG--ty~v~y~p~~~G~~~i~V~ 87 (212)
T 1qfh_A 59 DAKVTDNNDG--TYGVVYDAPVEGNYNVNVT 87 (212)
T ss_dssp CCEEEECSSS--EEEEEECCCSSEEEEEEEE
T ss_pred eeEEEECCCc--EEEEEEECcCcEEEEEEEE
Confidence 3344554444 7888888888899988877
No 43
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A
Probab=25.20 E-value=93 Score=21.72 Aligned_cols=28 Identities=11% Similarity=0.130 Sum_probs=18.9
Q ss_pred eEEEEeecCCCCceEEEEEEEcCCCeeE
Q 045131 2 TVALECKESEGGEVVYSREVVSDQSGTY 29 (107)
Q Consensus 2 ~V~leCk~~~~~~v~~~~e~~TD~~G~y 29 (107)
.|+|+=.+-..+.-+.-.+++||++|.-
T Consensus 45 ~V~L~~~~~~~~~w~~l~~~~Tn~DGR~ 72 (138)
T 3iwv_A 45 TIVLHRLDPVSSAWNILTTGITNDDGRC 72 (138)
T ss_dssp EEEEEEECSSSCCEEEEEEEECCTTSCC
T ss_pred EEEEEEECCCCCCcEEEEEEecCCCCCc
Confidence 4777755422245667789999998854
No 44
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=24.14 E-value=84 Score=24.40 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=9.7
Q ss_pred EEEEEEEcCCCeeEEEEec
Q 045131 16 VYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 16 ~~~~e~~TD~~G~y~i~v~ 34 (107)
+|.++-+--+.|.|.|.|.
T Consensus 314 ty~v~y~P~~~G~~~I~V~ 332 (347)
T 4b7l_A 314 TYSVEYLPKVTGLHKVTVL 332 (347)
T ss_dssp EEEEEECCCSSSEEEEEEE
T ss_pred EEEEEEEECCCEeEEEEEE
Confidence 4444444555555555544
No 45
>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=23.38 E-value=60 Score=20.86 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=16.2
Q ss_pred CceEEEEEEEcCCCeeEEEEec
Q 045131 13 GEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 13 ~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
+.-+|.+..+-.+.|.|.|.|.
T Consensus 53 ~dGty~v~ytP~e~G~h~v~V~ 74 (102)
T 2dlg_A 53 GKNSHCVRFVPQEMGVHTVSVK 74 (102)
T ss_dssp SSSEEEEEBCCCTTCEEEEEEE
T ss_pred CCCEEEEEEEecCCEeEEEEEE
Confidence 3447777778888888887766
No 46
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A
Probab=22.35 E-value=56 Score=21.23 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=15.4
Q ss_pred CceEEEEEEEcCCCeeEEEEec
Q 045131 13 GEVVYSREVVSDQSGTYKIPIE 34 (107)
Q Consensus 13 ~~v~~~~e~~TD~~G~y~i~v~ 34 (107)
+.-+|.+..+-.+.|.|.|.|.
T Consensus 63 ~~gty~v~ytP~~~G~h~v~V~ 84 (112)
T 2d7p_A 63 DSDKHTIRFIPHENGVHSIDVK 84 (112)
T ss_dssp BTTEEEEEECCSSCEEEEEEEE
T ss_pred CCCeEEEEEEcCCCEeEEEEEE
Confidence 3446777777777788877765
No 47
>3sd2_A Putative member of DUF3244 protein family; immunoglobulin-like beta-sandwich, structural genomics, JOIN for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron}
Probab=20.98 E-value=1.8e+02 Score=19.28 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=13.0
Q ss_pred eEEEEeecCCCCceEEEE
Q 045131 2 TVALECKESEGGEVVYSR 19 (107)
Q Consensus 2 ~V~leCk~~~~~~v~~~~ 19 (107)
.|.+.=.|..+|+++|+.
T Consensus 46 ~vTItItNe~TG~~VYs~ 63 (101)
T 3sd2_A 46 YAIITVTNKATGEIVHSK 63 (101)
T ss_dssp CEEEEEEETTTCCEEEEE
T ss_pred cEEEEEEECCCCcEEEEE
Confidence 456666776689999884
Done!