BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045134
         (529 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IML|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From
           Burkholderia Pseudomallei
 pdb|3IML|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase From
           Burkholderia Pseudomallei
 pdb|3IML|C Chain C, Crystal Structure Of S-Adenosylmethionine Synthetase From
           Burkholderia Pseudomallei
 pdb|3IML|D Chain D, Crystal Structure Of S-Adenosylmethionine Synthetase From
           Burkholderia Pseudomallei
          Length = 399

 Score = 33.5 bits (75), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 15/79 (18%)

Query: 153 ISGVLATQALL---YAIGLGKGAIPTAAAINWVLKDGIGYLSKIMLSNFGR-HFDVNPKG 208
           ++  LA++AL+   YAIG+ +   PT+  +N     G G +S   ++   R HFD+ PKG
Sbjct: 294 VAAGLASRALIQVSYAIGVAE---PTSVMVNTF---GTGRVSDETITKLVREHFDLRPKG 347

Query: 209 WRLFADLL-----ENAAFG 222
                DLL     + AA+G
Sbjct: 348 IIQMLDLLRPIYEKTAAYG 366


>pdb|2FN0|A Chain A, Crystal Structure Of Yersinia Enterocolitica Salicylate
           Synthase (Irp9)
 pdb|2FN0|B Chain B, Crystal Structure Of Yersinia Enterocolitica Salicylate
           Synthase (Irp9)
 pdb|2FN1|A Chain A, Crystal Structures Of Yersinia Enterocolitica Salicylate
           Synthase (Irp9) In Complex With The Reaction Products
           Salicylate And Pyruvate
 pdb|2FN1|B Chain B, Crystal Structures Of Yersinia Enterocolitica Salicylate
           Synthase (Irp9) In Complex With The Reaction Products
           Salicylate And Pyruvate
          Length = 437

 Score = 29.3 bits (64), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 447 MLKSLFQASYLYWLERNAGIVATST 471
           +L+S+FQ S   W++  AGI+A ST
Sbjct: 392 VLRSVFQDSQRCWIQAGAGIIAQST 416


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,707,318
Number of Sequences: 62578
Number of extensions: 511467
Number of successful extensions: 1078
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1075
Number of HSP's gapped (non-prelim): 4
length of query: 529
length of database: 14,973,337
effective HSP length: 103
effective length of query: 426
effective length of database: 8,527,803
effective search space: 3632844078
effective search space used: 3632844078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)