Query 045134
Match_columns 529
No_of_seqs 185 out of 268
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 17:52:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ytv_M V1AR, vasopressin V1A r 24.8 23 0.0008 29.6 1.1 11 2-12 5-15 (84)
2 1uoy_A Bubble protein; exudate 12.6 76 0.0026 24.7 1.3 17 69-85 31-47 (64)
3 3hvz_A Uncharacterized protein 11.3 1.2E+02 0.004 24.5 2.2 32 418-451 2-33 (78)
4 3si5_X Protein CASC5; BUBR1-bl 9.8 1.1E+02 0.0039 19.7 1.2 13 489-501 10-22 (24)
5 2ebm_A RWD domain-containing p 5.6 1.9E+02 0.0064 24.4 1.1 17 120-137 58-74 (128)
6 1whv_A Poly(A)-specific ribonu 5.5 4.4E+02 0.015 22.6 3.2 39 411-450 30-68 (100)
7 2dg7_A Putative transcriptiona 5.4 1.7E+02 0.0058 25.1 0.7 21 251-271 36-56 (195)
8 3cjd_A Transcriptional regulat 5.2 2.3E+02 0.008 24.6 1.5 21 251-271 41-61 (198)
9 2nrg_A Intrinsic membrane prot 5.2 4E+02 0.014 22.1 2.7 28 198-226 7-34 (82)
10 2hdc_A Protein (transcription 4.6 3.6E+02 0.012 22.7 2.1 23 481-505 25-47 (97)
No 1
>1ytv_M V1AR, vasopressin V1A receptor; GPCR, fusion protein, maltose- binding protein, sugar binding protein, hormone receptor; HET: MAL; 1.80A {Homo sapiens}
Probab=24.77 E-value=23 Score=29.60 Aligned_cols=11 Identities=91% Similarity=1.081 Sum_probs=5.5
Q ss_pred CCCCCCCCCCC
Q 045134 2 NNNNNNNNNNP 12 (529)
Q Consensus 2 ~~~~~~~~~~~ 12 (529)
||||||||||-
T Consensus 5 ~~~~~~~~~~M 15 (84)
T 1ytv_M 5 NNNNNNNNNNL 15 (84)
T ss_pred ccCCCCccccc
Confidence 44555555553
No 2
>1uoy_A Bubble protein; exudate protein, sulfur phasing, potential killer toxin; 1.5A {Penicillium brevicompactum} SCOP: g.3.19.1
Probab=12.58 E-value=76 Score=24.74 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=15.1
Q ss_pred CccceeeeeCCcccccc
Q 045134 69 EYDAVWEVKGSKRTKLI 85 (529)
Q Consensus 69 ~~~~~~~~~~~~~~~l~ 85 (529)
++.+|-|-||||||++-
T Consensus 31 drtgvvecrggkwteiq 47 (64)
T 1uoy_A 31 DRTGVVECKGGKWTEVQ 47 (64)
T ss_dssp TSSEEEEEETTEEEEEE
T ss_pred cccceEEecCCceEEee
Confidence 68899999999999863
No 3
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=11.27 E-value=1.2e+02 Score=24.51 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=20.6
Q ss_pred hccccCCeEEEecCCeEEEEeCCCCChHHHHHHH
Q 045134 418 SLYEDEGYILTEHGGKFCVVLKESALPQDMLKSL 451 (529)
Q Consensus 418 ~lf~~EkYlL~~~~~~i~VvLk~~At~~DvLkA~ 451 (529)
++|.+|-|+.++.. .+ +.|.+|+|+.|+.++.
T Consensus 2 ~l~~~~i~v~tP~G-~~-~~lp~GaT~~D~A~~I 33 (78)
T 3hvz_A 2 DLAPEEVFVFTPKG-DV-ISLPIGSTVIDFAYAI 33 (78)
T ss_dssp ----CEEEEECTTS-CE-EEEETTCBHHHHHHHH
T ss_pred CCcCceEEEECCCC-CE-EEecCCCCHHHHHHHh
Confidence 46777777766543 33 5689999999987665
No 4
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=9.85 E-value=1.1e+02 Score=19.75 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=10.6
Q ss_pred HHhHHHHHHhhHh
Q 045134 489 QREFNHVKSDSAS 501 (529)
Q Consensus 489 ~~~F~~Fl~~L~~ 501 (529)
.-+|++|+++|+-
T Consensus 10 KinfndFIKRLK~ 22 (24)
T 3si5_X 10 KIDFNDFIKRLKT 22 (26)
T ss_pred hccHHHHHHHHhc
Confidence 4589999999874
No 5
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=5.63 E-value=1.9e+02 Score=24.43 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=12.8
Q ss_pred HHHhccCCCCCCCCCccc
Q 045134 120 FVQFMLPEGFPDSVTSDY 137 (529)
Q Consensus 120 l~~~FLP~GYP~SVs~dY 137 (529)
...+-+|.+||+ +.|.+
T Consensus 58 ~L~v~~p~~YP~-~~P~i 74 (128)
T 2ebm_A 58 TLKFTYSEKYPD-EAPLY 74 (128)
T ss_dssp EEEEECCSSTTT-SCCEE
T ss_pred EEEEEeCCCCCC-CCceE
Confidence 357889999999 45654
No 6
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=5.46 E-value=4.4e+02 Score=22.59 Aligned_cols=39 Identities=21% Similarity=0.104 Sum_probs=29.0
Q ss_pred hhHHHHHhccccCCeEEEecCCeEEEEeCCCCChHHHHHH
Q 045134 411 EDAHALFSLYEDEGYILTEHGGKFCVVLKESALPQDMLKS 450 (529)
Q Consensus 411 ~~l~~Ll~lf~~EkYlL~~~~~~i~VvLk~~At~~DvLkA 450 (529)
.|+..|+.-|. -=+|=|.++..++|+|++.....++|++
T Consensus 30 ~DI~~lFs~fg-gv~I~WidDTsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 30 SDLYQLFSAFG-NIQISWIDDTSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp HHHHHHHTTTC-SCCCEEEETTEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHhhccC-CEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 57777888775 5566788999999999966665555554
No 7
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=5.41 E-value=1.7e+02 Score=25.09 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=17.1
Q ss_pred Hhhhhhhhhhhccccccchhh
Q 045134 251 IQASTRSCFYAGFAARRNFAE 271 (529)
Q Consensus 251 a~~aTRa~i~~hFA~~~NlaD 271 (529)
.++.+|++||.||.-.+.|-.
T Consensus 36 ~agvs~~t~Y~~F~sK~~Ll~ 56 (195)
T 2dg7_A 36 RAGLTRRSYFRYFPDKREVLF 56 (195)
T ss_dssp HTTCCHHHHHHHCSSTTGGGT
T ss_pred HhCCCHHHHHHHcCCHHHHHH
Confidence 456899999999988877754
No 8
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=5.23 E-value=2.3e+02 Score=24.64 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=16.5
Q ss_pred Hhhhhhhhhhhccccccchhh
Q 045134 251 IQASTRSCFYAGFAARRNFAE 271 (529)
Q Consensus 251 a~~aTRa~i~~hFA~~~NlaD 271 (529)
.++.+|++||.||.-.+.|-+
T Consensus 41 ~agvs~~t~Y~hF~~Ke~Ll~ 61 (198)
T 3cjd_A 41 QADCAVGAIYTHFQDLNALTL 61 (198)
T ss_dssp HHTSCHHHHHHHCSSHHHHHH
T ss_pred HhCCCccHHHHHhCCHHHHHH
Confidence 456899999999987766654
No 9
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=5.20 E-value=4e+02 Score=22.09 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=20.1
Q ss_pred ccCcCcCCCccchhhHHHHHHHHHHHHhh
Q 045134 198 FGRHFDVNPKGWRLFADLLENAAFGLEML 226 (529)
Q Consensus 198 ~G~~fD~d~K~WRl~AD~lnd~a~~LEll 226 (529)
|...||.++|. ||.+|++....=+.-..
T Consensus 7 f~dyL~~~~k~-rLr~wi~~qMlKGAG~A 34 (82)
T 2nrg_A 7 FNDHLNTNPKT-NLRLWVAFQMMKGAGWA 34 (82)
T ss_dssp GGSSSCCCHHH-HHHHHHHHHHTHHHHTH
T ss_pred hhhhcccCcch-hHHHHHHHHHHhcccHH
Confidence 56788888888 99999986654444333
No 10
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=4.61 E-value=3.6e+02 Score=22.68 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHhhHhCCcc
Q 045134 481 LEISLDYVQREFNHVKSDSASVGWV 505 (529)
Q Consensus 481 le~Sl~~~~~~F~~Fl~~L~~~GW~ 505 (529)
|.+-++++.+.|+-|... ..||+
T Consensus 25 L~eIY~~i~~~fpyyr~~--~~gWq 47 (97)
T 2hdc_A 25 LSGICEFISNRFPYYREK--FPAWQ 47 (97)
T ss_dssp HHHHHHHHHHHCHHHHHH--CSSHH
T ss_pred HHHHHHHHHHhchhhccC--Cccee
Done!