Query 045134
Match_columns 529
No_of_seqs 185 out of 268
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 17:53:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045134.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045134hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d7ya3 d.87.1.1 (A:309-405) N 18.2 28 0.0021 26.9 2.3 35 325-359 53-87 (97)
2 d1q1ra3 d.87.1.1 (A:320-422) P 13.1 46 0.0034 25.9 2.3 36 325-360 51-86 (103)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 11.6 4.3E+02 0.032 22.7 12.5 25 206-230 88-112 (447)
4 d1uoya_ g.3.19.1 (A:) Bubble p 11.2 42 0.003 24.4 1.3 18 68-85 30-47 (64)
5 d2iu5a1 a.4.1.9 (A:1-71) Trans 9.8 55 0.004 23.3 1.6 21 251-271 35-55 (71)
6 d1vi0a1 a.4.1.9 (A:6-77) Hypot 9.4 56 0.004 23.1 1.5 22 251-272 30-51 (72)
7 d3etja2 c.30.1.1 (A:1-78) N5-c 8.6 53 0.0039 24.8 1.1 21 186-206 8-34 (78)
8 d2fbqa1 a.4.1.9 (A:2-80) Trans 8.4 63 0.0046 23.2 1.5 20 252-271 34-53 (79)
9 d1pb6a1 a.4.1.9 (A:14-85) Hypo 7.6 56 0.0041 23.3 0.8 21 251-271 33-53 (72)
10 d2sqca1 a.102.4.2 (A:8-36,A:30 7.5 4.2E+02 0.031 23.9 7.5 62 109-185 4-65 (352)
No 1
>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Probab=18.20 E-value=28 Score=26.88 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=30.5
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCCCChhhhhcc
Q 045134 325 QSIELRTLNPYRASLVFSEYLLSGQAPPVKEVNDE 359 (529)
Q Consensus 325 r~v~l~TLN~~R~~iv~~~~l~~g~vpsp~evn~~ 359 (529)
|.+-.-++|+.|-....+..++.|..|+++++.+.
T Consensus 53 ~lvgv~~vn~~~~~~~~rrli~~~~~~~~~~LaD~ 87 (97)
T d1d7ya3 53 RIVGATCVNNARDFAPLRRLLAVGAKPDRAALADP 87 (97)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHTTCCCCHHHHHSS
T ss_pred EEEEEEEeCCHHHHHHHHHHHHCCCCCCHHHhcCC
Confidence 45566789999999999999999999999998763
No 2
>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}
Probab=13.08 E-value=46 Score=25.92 Aligned_cols=36 Identities=11% Similarity=0.023 Sum_probs=31.0
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCCCChhhhhccC
Q 045134 325 QSIELRTLNPYRASLVFSEYLLSGQAPPVKEVNDEE 360 (529)
Q Consensus 325 r~v~l~TLN~~R~~iv~~~~l~~g~vpsp~evn~~E 360 (529)
+.+..-++|+.|-..+.+..++.+..|+++++.+.+
T Consensus 51 ~lvav~~vn~~~~~~~~r~li~~~~~~~~~~L~D~~ 86 (103)
T d1q1ra3 51 RVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGDES 86 (103)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHTTCCCCHHHHTCTT
T ss_pred eEEEEEEeCCHHHHHHHHHHHHCCCCcCHHHhcCCC
Confidence 456678999999999999999999999999887643
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=11.62 E-value=4.3e+02 Score=22.72 Aligned_cols=25 Identities=16% Similarity=0.091 Sum_probs=16.2
Q ss_pred CccchhhHHHHHHHHHHHHhhhccC
Q 045134 206 PKGWRLFADLLENAAFGLEMLTPAF 230 (529)
Q Consensus 206 ~K~WRl~AD~lnd~a~~LElltP~f 230 (529)
.|+.-+.+-++.-+++.+=...|.+
T Consensus 88 ~r~~~~~~~~~~~~~~~~~~~~~~~ 112 (447)
T d1pw4a_ 88 PRVFLPAGLILAAAVMLFMGFVPWA 112 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred chHHHHHHHHHHHHHHhhccccchh
Confidence 3566667777777777766555543
No 4
>d1uoya_ g.3.19.1 (A:) Bubble protein {Penicillium brevicompactum [TaxId: 5074]}
Probab=11.22 E-value=42 Score=24.43 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=15.4
Q ss_pred cCccceeeeeCCcccccc
Q 045134 68 KEYDAVWEVKGSKRTKLI 85 (529)
Q Consensus 68 ~~~~~~~~~~~~~~~~l~ 85 (529)
-++.+|=|-||||||++-
T Consensus 30 cdrtg~VECrgGkWTEiq 47 (64)
T d1uoya_ 30 CDRTGVVECKGGKWTEVQ 47 (64)
T ss_dssp TTSSEEEEEETTEEEEEE
T ss_pred ccccceEEecCCceEEee
Confidence 367899999999999863
No 5
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=9.82 E-value=55 Score=23.27 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=16.0
Q ss_pred Hhhhhhhhhhhccccccchhh
Q 045134 251 IQASTRSCFYAGFAARRNFAE 271 (529)
Q Consensus 251 a~~aTRa~i~~hFA~~~NlaD 271 (529)
.++.+|+++|.||.-...|-+
T Consensus 35 ~agvs~~t~Y~~F~~k~~l~~ 55 (71)
T d2iu5a1 35 TAKIRRQTFYNYFQNQEELLS 55 (71)
T ss_dssp HHTSCGGGGGGTCSSHHHHHH
T ss_pred HhCccccHHHHHcCCHHHHHH
Confidence 346899999999987666544
No 6
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=9.38 E-value=56 Score=23.11 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=17.0
Q ss_pred Hhhhhhhhhhhccccccchhhh
Q 045134 251 IQASTRSCFYAGFAARRNFAEV 272 (529)
Q Consensus 251 a~~aTRa~i~~hFA~~~NlaDV 272 (529)
.++.+|++|+.||.-.++|-.=
T Consensus 30 ~agvs~~~~y~~F~~K~~L~~~ 51 (72)
T d1vi0a1 30 QAGVADGTIYLYFKNKEDILIS 51 (72)
T ss_dssp HHTSCHHHHHHHCSSHHHHHHH
T ss_pred HHCcCHHHHHHHCcCHHHHHHH
Confidence 3468999999999977776543
No 7
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}
Probab=8.65 E-value=53 Score=24.77 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=15.0
Q ss_pred hhhHHHHHHH--h-hcc---CcCcCCC
Q 045134 186 GIGYLSKIML--S-NFG---RHFDVNP 206 (529)
Q Consensus 186 G~G~lg~Ilf--a-~~G---~~fD~d~ 206 (529)
|-|+||+++. + ++| .-+|+++
T Consensus 8 G~GQLgrMl~~Aa~~LG~~v~vldp~~ 34 (78)
T d3etja2 8 GNGQLGRMLRQAGEPLGIAVWPVGLDA 34 (78)
T ss_dssp BCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred cCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 6799999995 3 678 3456554
No 8
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.45 E-value=63 Score=23.22 Aligned_cols=20 Identities=5% Similarity=0.184 Sum_probs=16.0
Q ss_pred hhhhhhhhhhccccccchhh
Q 045134 252 QASTRSCFYAGFAARRNFAE 271 (529)
Q Consensus 252 ~~aTRa~i~~hFA~~~NlaD 271 (529)
.+.+|++|+.||.-.+.|-.
T Consensus 34 agvs~~s~y~~F~~K~~l~~ 53 (79)
T d2fbqa1 34 AGVNLAAVNYHFGSKKALIQ 53 (79)
T ss_dssp HTSCHHHHHHHTCSHHHHHH
T ss_pred HCcChhHHHHHCcCHHHHHH
Confidence 46899999999987776644
No 9
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=7.63 E-value=56 Score=23.32 Aligned_cols=21 Identities=5% Similarity=0.162 Sum_probs=15.8
Q ss_pred Hhhhhhhhhhhccccccchhh
Q 045134 251 IQASTRSCFYAGFAARRNFAE 271 (529)
Q Consensus 251 a~~aTRa~i~~hFA~~~NlaD 271 (529)
..+.++++++.||.-.+.|-.
T Consensus 33 ~agvs~~t~y~~F~~K~~l~~ 53 (72)
T d1pb6a1 33 LAGVSKTNLLYYFPSKEALYI 53 (72)
T ss_dssp HTTSCHHHHHHHSSSHHHHHH
T ss_pred HhCCChHHHHHHCcCHHHHHH
Confidence 346789999999976666543
No 10
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}
Probab=7.55 E-value=4.2e+02 Score=23.90 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHHHhccCCCCCCCCCccchhhhhhHHHHHHHHHhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh
Q 045134 109 VNKLWDECRELFVQFMLPEGFPDSVTSDYLNYSLWRSVQGVASQISGVLATQALLYAIGLGKGAIPTAAAINWVLKD 185 (529)
Q Consensus 109 ~~~~~~~~~~~l~~~FLP~GYP~SVs~dYl~Y~~w~~lq~f~ssi~gvLsTqAlL~avGVG~~A~p~AAal~WVLKD 185 (529)
+.+..+|-.++|++.=-|+|+= ..++.. ++||+ .|++|||+.+ |+-+.-..+.=++.|+++-
T Consensus 4 ~~~~i~rav~~L~~~q~~dG~w---~~~~~s-~vwdT----------ala~~Al~ea-G~~~~~~~l~ka~~~L~~~ 65 (352)
T d2sqca1 4 YARTLDRAVEYLLSCQKDEGYW---WGPLIS-PVWDT----------GLAVLALRAA-GLPADHDRLVKAGEWLLDR 65 (352)
T ss_dssp HHHHHHHHHHHHHHHCCTTSCC---CCCECC-HHHHH----------HHHHHHHHHT-TCCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCce---eCCCCC-cHHHH----------HHHHHHHHHc-CCCCCcHHHHHHHHHHHHh
Confidence 3567778888898888999962 122222 67875 5788998776 6643333455678888763
Done!