BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045137
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MMO|G Chain G, Crystal Structure Of A Bacterial Non-Haem Iron Hydroxylase
That Catalyses The Biological Oxidation Of Methane
pdb|1MMO|H Chain H, Crystal Structure Of A Bacterial Non-Haem Iron Hydroxylase
That Catalyses The Biological Oxidation Of Methane
pdb|1MTY|G Chain G, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
pdb|1MTY|H Chain H, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
Length = 162
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 43/120 (35%), Gaps = 30/120 (25%)
Query: 206 MEEIISVGKIAENPEM-----MGHISPFENLKSLDLSYL----------PELKSIFWKPL 250
+ +I V + + EM M H +PF N LD YL LK+ + +
Sbjct: 13 VNKIAHVNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEV 72
Query: 251 PFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFRSCFQP 310
F H G A L N+AK++ WE E I FR ++P
Sbjct: 73 DFRHKTAFGEDAKSVLDGTVAKMNAAKDK---------------WEAEKIHIGFRQAYKP 117
>pdb|1FZ4|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ4|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ5|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ5|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ7|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9
M Ethanol
pdb|1FZ7|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9
M Ethanol
pdb|1FYZ|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FYZ|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FZ0|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ0|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ1|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ1|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ2|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ2|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ3|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2
(0.1 M Pipes)
pdb|1FZ3|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2
(0.1 M Pipes)
pdb|1FZ6|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ6|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ8|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Dibromomethane
pdb|1FZ8|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Dibromomethane
pdb|1FZ9|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Iodoethane
pdb|1FZ9|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Iodoethane
pdb|1FZH|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZH|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZI|E Chain E, Methane Monooxygenase Hydroxylase, Form I Pressurized With
Xenon Gas
pdb|1FZI|F Chain F, Methane Monooxygenase Hydroxylase, Form I Pressurized With
Xenon Gas
pdb|1XU5|E Chain E, Soluble Methane Monooxygenase Hydroxylase-phenol Soaked
pdb|1XU5|F Chain F, Soluble Methane Monooxygenase Hydroxylase-phenol Soaked
pdb|1XVB|E Chain E, Soluble Methane Monooxygenase Hydroxylase: 6-Bromohexanol
Soaked Structure
pdb|1XVB|F Chain F, Soluble Methane Monooxygenase Hydroxylase: 6-Bromohexanol
Soaked Structure
pdb|1XVC|E Chain E, Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol
Soaked Structure
pdb|1XVC|F Chain F, Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol
Soaked Structure
pdb|1XVD|E Chain E, Soluble Methane Monooxygenase Hydroxylase: 4-Fluorophenol
Soaked Structure
pdb|1XVD|F Chain F, Soluble Methane Monooxygenase Hydroxylase: 4-Fluorophenol
Soaked Structure
pdb|1XVE|E Chain E, Soluble Methane Monooxygenase Hydroxylase: 3-bromo-3-
Butenol Soaked Structure
pdb|1XVE|F Chain F, Soluble Methane Monooxygenase Hydroxylase: 3-bromo-3-
Butenol Soaked Structure
pdb|1XVF|E Chain E, Soluble Methane Monooxygenase Hydroxylase: Chloropropanol
Soaked Structure
pdb|1XVF|F Chain F, Soluble Methane Monooxygenase Hydroxylase: Chloropropanol
Soaked Structure
pdb|1XVG|E Chain E, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol
Soaked Structure
pdb|1XVG|F Chain F, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol
Soaked Structure
pdb|1XU3|E Chain E, Soluble Methane Monooxygenase Hydroxylase-Soaked With
Bromophenol
pdb|1XU3|F Chain F, Soluble Methane Monooxygenase Hydroxylase-Soaked With
Bromophenol
pdb|4GAM|C Chain C, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|H Chain H, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|M Chain M, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|R Chain R, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
Length = 170
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 25/99 (25%)
Query: 222 MGHISPFENLKSLDLSYL----------PELKSIFWKPLPFTHLKEMGVRACDQLRKLPL 271
M H +PF N LD YL LK+ + + F H G A L
Sbjct: 37 MDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVA 96
Query: 272 DSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFRSCFQP 310
N+AK++ WE E I FR ++P
Sbjct: 97 KMNAAKDK---------------WEAEKIHIGFRQAYKP 120
>pdb|1XMF|E Chain E, Structure Of Mn(Ii)-Soaked Apo Methane Monooxygenase
Hydroxylase Crystals From M. Capsulatus (Bath)
pdb|1XMF|F Chain F, Structure Of Mn(Ii)-Soaked Apo Methane Monooxygenase
Hydroxylase Crystals From M. Capsulatus (Bath)
pdb|1XMG|E Chain E, Crystal Structure Of Apo Methane Monooxygenase Hydroxylase
From M. Capsulatus (Bath)
pdb|1XMG|F Chain F, Crystal Structure Of Apo Methane Monooxygenase Hydroxylase
From M. Capsulatus (Bath)
pdb|1XMH|E Chain E, Structure Of Co(Ii) Reconstituted Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
pdb|1XMH|F Chain F, Structure Of Co(Ii) Reconstituted Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
Length = 169
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 25/99 (25%)
Query: 222 MGHISPFENLKSLDLSYL----------PELKSIFWKPLPFTHLKEMGVRACDQLRKLPL 271
M H +PF N LD YL LK+ + + F H G A L
Sbjct: 36 MDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVA 95
Query: 272 DSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFRSCFQP 310
N+AK++ WE E I FR ++P
Sbjct: 96 KMNAAKDK---------------WEAEKIHIGFRQAYKP 119
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 23/98 (23%)
Query: 103 LSSNKLKSCIRSLY--------LYLTGDKKSIIDATAFTDLNHLNELWI----------- 143
L SNKL S + LYL +K + A F +L +L LW+
Sbjct: 44 LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG 103
Query: 144 --DNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYS 179
D + L EL++D ++ K P VF SL +T S
Sbjct: 104 VFDQLVNLAELRLDRNQL--KSLPPRVFDSLTKLTYLS 139
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 254 HLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNRLQWEDE 298
H+KE ++ ++ K+P S+SA+ VIR DW L W DE
Sbjct: 25 HVKETALKELNRYEKIP--SSSAESS--VIRNYIDWLVALPWTDE 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,441,350
Number of Sequences: 62578
Number of extensions: 316560
Number of successful extensions: 597
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 9
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)