Query 045137
Match_columns 312
No_of_seqs 131 out of 1731
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 10:12:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.7 3.9E-17 8.4E-22 164.9 12.8 240 2-272 616-912 (1153)
2 PLN00113 leucine-rich repeat r 99.7 9.3E-17 2E-21 160.9 11.2 171 2-204 145-319 (968)
3 PLN00113 leucine-rich repeat r 99.6 5.5E-16 1.2E-20 155.4 10.7 232 1-264 168-415 (968)
4 KOG4658 Apoptotic ATPase [Sign 99.6 4.7E-16 1E-20 150.7 6.4 292 1-304 575-883 (889)
5 KOG0444 Cytoskeletal regulator 99.6 3.9E-17 8.4E-22 146.9 -3.2 236 2-270 108-379 (1255)
6 PLN03210 Resistant to P. syrin 99.6 2.8E-14 6E-19 144.4 13.9 47 224-271 797-843 (1153)
7 KOG4194 Membrane glycoprotein 99.5 5.4E-16 1.2E-20 138.4 -1.2 244 2-276 154-438 (873)
8 KOG4194 Membrane glycoprotein 99.5 8.9E-15 1.9E-19 130.8 3.8 246 2-283 83-346 (873)
9 KOG0444 Cytoskeletal regulator 99.5 1.4E-15 3.1E-20 136.9 -1.4 234 2-257 131-390 (1255)
10 KOG0472 Leucine-rich repeat pr 99.3 2.7E-13 5.7E-18 116.5 -0.7 95 168-264 433-539 (565)
11 KOG0617 Ras suppressor protein 99.3 1.3E-13 2.8E-18 105.5 -3.7 153 17-204 30-184 (264)
12 PRK15387 E3 ubiquitin-protein 99.3 2.7E-11 5.9E-16 115.8 10.4 53 2-61 206-258 (788)
13 KOG0472 Leucine-rich repeat pr 99.2 5.4E-14 1.2E-18 120.7 -9.3 240 2-276 50-297 (565)
14 KOG4658 Apoptotic ATPase [Sign 99.2 1E-11 2.2E-16 120.9 3.8 219 9-268 559-785 (889)
15 KOG0618 Serine/threonine phosp 99.2 1.4E-12 3E-17 122.5 -3.7 55 1-57 245-299 (1081)
16 PRK15387 E3 ubiquitin-protein 99.1 1.4E-10 3E-15 111.0 7.9 220 2-264 227-456 (788)
17 PRK15370 E3 ubiquitin-protein 99.1 1.1E-10 2.3E-15 112.1 6.2 53 2-60 183-235 (754)
18 KOG4237 Extracellular matrix p 99.1 1.4E-11 3.1E-16 105.7 -1.6 62 2-64 72-135 (498)
19 PRK15370 E3 ubiquitin-protein 99.0 6.8E-10 1.5E-14 106.7 8.9 203 2-272 204-406 (754)
20 cd00116 LRR_RI Leucine-rich re 99.0 1.8E-10 3.9E-15 101.1 3.2 180 2-204 3-204 (319)
21 KOG0617 Ras suppressor protein 99.0 1.9E-11 4.1E-16 93.7 -4.1 153 2-191 38-194 (264)
22 KOG0618 Serine/threonine phosp 99.0 2E-11 4.3E-16 114.8 -5.0 208 2-241 269-488 (1081)
23 cd00116 LRR_RI Leucine-rich re 98.9 3.6E-10 7.8E-15 99.2 1.9 226 2-263 28-288 (319)
24 KOG3207 Beta-tubulin folding c 98.8 7.1E-10 1.5E-14 96.6 0.5 188 17-239 118-311 (505)
25 KOG1259 Nischarin, modulator o 98.8 1.6E-09 3.5E-14 90.4 1.5 121 2-146 289-409 (490)
26 KOG2120 SCF ubiquitin ligase, 98.8 3.5E-10 7.6E-15 94.0 -2.8 202 20-256 185-390 (419)
27 PF13855 LRR_8: Leucine rich r 98.8 3.4E-09 7.4E-14 68.9 1.9 55 2-57 6-61 (61)
28 KOG4341 F-box protein containi 98.8 4.1E-10 8.8E-15 97.6 -3.3 139 112-268 270-416 (483)
29 KOG4237 Extracellular matrix p 98.7 4.8E-10 1E-14 96.5 -3.2 50 7-60 56-106 (498)
30 PF14580 LRR_9: Leucine-rich r 98.7 8.3E-09 1.8E-13 81.5 3.3 75 4-99 4-79 (175)
31 PF14580 LRR_9: Leucine-rich r 98.7 2.3E-09 5E-14 84.7 0.1 125 1-146 23-150 (175)
32 KOG2120 SCF ubiquitin ligase, 98.7 2.8E-10 6E-15 94.6 -5.4 183 45-264 185-374 (419)
33 KOG0532 Leucine-rich repeat (L 98.7 2.9E-09 6.3E-14 95.7 -0.5 162 3-203 104-270 (722)
34 KOG3207 Beta-tubulin folding c 98.6 1.5E-08 3.2E-13 88.5 2.4 175 3-205 127-313 (505)
35 COG4886 Leucine-rich repeat (L 98.5 6.9E-08 1.5E-12 87.5 3.4 169 2-206 121-290 (394)
36 KOG4341 F-box protein containi 98.5 8.7E-09 1.9E-13 89.5 -2.5 145 111-270 295-443 (483)
37 PF13855 LRR_8: Leucine rich r 98.4 2.6E-07 5.7E-12 59.9 3.4 60 20-95 1-60 (61)
38 COG4886 Leucine-rich repeat (L 98.3 6.2E-07 1.3E-11 81.2 5.6 188 2-240 98-288 (394)
39 KOG0532 Leucine-rich repeat (L 98.3 2.5E-08 5.3E-13 89.9 -4.9 165 2-205 80-246 (722)
40 PF12799 LRR_4: Leucine Rich r 98.1 1.7E-06 3.8E-11 51.7 2.4 39 20-60 1-39 (44)
41 PF12799 LRR_4: Leucine Rich r 98.1 3E-06 6.6E-11 50.7 3.4 37 1-38 5-41 (44)
42 KOG0531 Protein phosphatase 1, 98.1 7.3E-07 1.6E-11 81.2 -0.5 53 2-57 100-152 (414)
43 KOG1259 Nischarin, modulator o 98.0 1.2E-06 2.5E-11 73.6 0.1 102 17-145 281-383 (490)
44 PLN03150 hypothetical protein; 98.0 1.3E-05 2.8E-10 76.7 6.0 77 2-95 423-501 (623)
45 KOG0531 Protein phosphatase 1, 97.9 8.4E-07 1.8E-11 80.8 -2.2 119 3-146 78-196 (414)
46 KOG1909 Ran GTPase-activating 97.9 2.2E-06 4.7E-11 73.2 0.0 202 17-240 89-309 (382)
47 KOG1859 Leucine-rich repeat pr 97.8 1.3E-06 2.8E-11 81.3 -3.6 120 3-146 170-289 (1096)
48 KOG3665 ZYG-1-like serine/thre 97.7 1.5E-05 3.3E-10 76.4 2.0 107 20-145 122-229 (699)
49 KOG1644 U2-associated snRNP A' 97.7 3.6E-05 7.7E-10 61.1 3.7 54 3-58 48-101 (233)
50 KOG2982 Uncharacterized conser 97.7 1E-05 2.2E-10 68.0 0.5 41 168-209 222-265 (418)
51 KOG1909 Ran GTPase-activating 97.6 9.3E-06 2E-10 69.4 -1.0 233 1-264 34-309 (382)
52 KOG1947 Leucine rich repeat pr 97.6 5.3E-06 1.1E-10 76.9 -2.8 123 18-151 186-310 (482)
53 PRK15386 type III secretion pr 97.5 0.00032 7E-09 62.6 7.1 36 17-57 49-84 (426)
54 KOG1859 Leucine-rich repeat pr 97.5 8.8E-06 1.9E-10 76.0 -2.8 99 1-120 191-289 (1096)
55 PLN03150 hypothetical protein; 97.5 0.00018 3.9E-09 69.0 5.7 57 1-58 446-503 (623)
56 KOG3665 ZYG-1-like serine/thre 97.4 7.7E-05 1.7E-09 71.7 2.7 124 1-145 126-259 (699)
57 PRK15386 type III secretion pr 97.4 0.00092 2E-08 59.8 8.9 48 2-55 57-104 (426)
58 KOG2982 Uncharacterized conser 97.2 0.00018 3.9E-09 60.6 1.8 21 224-244 244-264 (418)
59 KOG1644 U2-associated snRNP A' 97.2 0.00087 1.9E-08 53.4 5.5 125 2-146 24-150 (233)
60 KOG1947 Leucine rich repeat pr 97.2 9E-05 1.9E-09 68.7 -0.3 118 14-146 208-331 (482)
61 KOG2123 Uncharacterized conser 96.7 0.00025 5.3E-09 59.3 -1.3 76 2-95 24-99 (388)
62 KOG2123 Uncharacterized conser 96.6 0.00013 2.9E-09 60.8 -3.3 85 44-150 18-102 (388)
63 KOG3864 Uncharacterized conser 96.5 0.00015 3.3E-09 57.6 -3.7 87 138-245 103-192 (221)
64 KOG4579 Leucine-rich repeat (L 96.3 0.00089 1.9E-08 50.1 -0.2 80 1-97 31-113 (177)
65 KOG4579 Leucine-rich repeat (L 96.1 0.00094 2E-08 50.0 -0.9 57 2-60 58-115 (177)
66 PF00560 LRR_1: Leucine Rich R 96.0 0.0025 5.5E-08 31.7 0.5 21 21-43 1-21 (22)
67 KOG2739 Leucine-rich acidic nu 95.7 0.0028 6.1E-08 52.5 0.1 37 17-56 40-76 (260)
68 KOG2739 Leucine-rich acidic nu 95.6 0.0065 1.4E-07 50.4 1.7 64 16-94 61-126 (260)
69 PF00560 LRR_1: Leucine Rich R 95.2 0.0035 7.6E-08 31.2 -0.6 19 1-19 4-22 (22)
70 smart00370 LRR Leucine-rich re 95.1 0.02 4.4E-07 29.6 2.1 23 19-42 1-23 (26)
71 smart00369 LRR_TYP Leucine-ric 95.1 0.02 4.4E-07 29.6 2.1 23 19-42 1-23 (26)
72 KOG3864 Uncharacterized conser 95.1 0.0063 1.4E-07 48.6 0.1 35 136-179 151-185 (221)
73 PF13504 LRR_7: Leucine rich r 94.7 0.021 4.6E-07 26.3 1.3 16 21-37 2-17 (17)
74 COG5238 RNA1 Ran GTPase-activa 93.1 0.035 7.6E-07 46.7 0.7 55 2-57 35-104 (388)
75 COG5238 RNA1 Ran GTPase-activa 92.9 0.22 4.7E-06 42.1 5.0 180 15-205 87-284 (388)
76 PF13306 LRR_5: Leucine rich r 92.1 0.28 6E-06 36.4 4.5 40 14-55 6-45 (129)
77 PF13306 LRR_5: Leucine rich r 89.2 2.7 5.9E-05 30.9 7.6 31 168-200 33-65 (129)
78 smart00367 LRR_CC Leucine-rich 87.9 0.33 7.1E-06 25.0 1.2 17 252-268 1-17 (26)
79 KOG0473 Leucine-rich repeat pr 86.6 0.066 1.4E-06 44.0 -2.8 55 2-58 70-124 (326)
80 smart00365 LRR_SD22 Leucine-ri 77.9 2 4.4E-05 22.2 1.7 16 19-35 1-16 (26)
81 smart00364 LRR_BAC Leucine-ric 74.6 2.3 4.9E-05 22.0 1.3 18 20-38 2-19 (26)
82 PF13516 LRR_6: Leucine Rich r 73.9 1.7 3.8E-05 21.6 0.8 13 45-57 2-14 (24)
83 KOG0473 Leucine-rich repeat pr 70.7 0.12 2.6E-06 42.6 -6.0 48 9-58 30-78 (326)
84 smart00368 LRR_RI Leucine rich 66.7 4.7 0.0001 21.0 1.6 11 20-30 2-12 (28)
85 KOG3763 mRNA export factor TAP 41.2 11 0.00025 35.2 0.7 83 168-261 216-309 (585)
86 TIGR00864 PCC polycystin catio 40.0 21 0.00046 40.1 2.5 29 3-31 1-30 (2740)
87 TIGR00864 PCC polycystin catio 36.0 27 0.00058 39.4 2.5 32 26-58 1-32 (2740)
88 smart00446 LRRcap occurring C- 21.7 45 0.00097 17.2 0.6 15 40-54 8-22 (26)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=3.9e-17 Score=164.93 Aligned_cols=240 Identities=20% Similarity=0.233 Sum_probs=144.2
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccc-cccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGG-FIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
|+++++.+..+|.+++.+++|++|+|+++..+..+|. ++.+++|++|++.+|.. ..+| ..+
T Consensus 616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp----------------~si 677 (1153)
T PLN03210 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELP----------------SSI 677 (1153)
T ss_pred EECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccc----------------hhh
Confidence 6777888888888888888888888888766777775 78888888888887654 3333 233
Q ss_pred cCCCCceEEEEEec-ChhhHHHHhhcc-----------------cccccceEEEEeecCCCccccchhh-----------
Q 045137 81 LGLKYLEVLELTLG-SYHALQILLSSN-----------------KLKSCIRSLYLYLTGDKKSIIDATA----------- 131 (312)
Q Consensus 81 ~~L~~L~~l~l~~~-~~~~~~~l~~l~-----------------~l~~~L~~L~l~~~~~~~~~~~~~~----------- 131 (312)
..+++|+.|+++.+ ....++...+++ ....+|+.|++.+.... .++..
T Consensus 678 ~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~---~lP~~~~l~~L~~L~l 754 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE---EFPSNLRLENLDELIL 754 (1153)
T ss_pred hccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc---cccccccccccccccc
Confidence 34444444444321 111111111111 00113333433332110 00000
Q ss_pred -------------------hcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCCccCCC
Q 045137 132 -------------------FTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFA 192 (312)
Q Consensus 132 -------------------l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l 192 (312)
...+++|+.|++++|..+..++.... .+++|+.|++++|..+..+|....+
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~----------~L~~L~~L~Ls~C~~L~~LP~~~~L 824 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ----------NLHKLEHLEIENCINLETLPTGINL 824 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh----------CCCCCCEEECCCCCCcCeeCCCCCc
Confidence 00112444455544433333332211 6788888888888778777755578
Q ss_pred CCCceEEEeeccccceecccC--------ccccCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCC
Q 045137 193 PNLKSLSLFKCRAMEEIISVG--------KIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACD 264 (312)
Q Consensus 193 ~~L~~L~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 264 (312)
++|++|++++|..+..+.... ....+..++.....+++|+.|++.+|++++.++.....+++|+.+++++|.
T Consensus 825 ~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 825 ESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 888888888887655432110 001112333356678899999999999999988878889999999999999
Q ss_pred CCCCCCCC
Q 045137 265 QLRKLPLD 272 (312)
Q Consensus 265 ~L~~l~~~ 272 (312)
+|+.++..
T Consensus 905 ~L~~~~l~ 912 (1153)
T PLN03210 905 ALTEASWN 912 (1153)
T ss_pred ccccccCC
Confidence 99876653
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.69 E-value=9.3e-17 Score=160.94 Aligned_cols=171 Identities=17% Similarity=0.185 Sum_probs=96.8
Q ss_pred cccCCCCCc-cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIR-ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
|+|++|.+. .+|.+++.+++|++|++++|.....+|.. ++++++|++|++++|.+.. ..+..+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~---------------~~p~~l 208 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVG---------------QIPREL 208 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcC---------------cCChHH
Confidence 566666665 56777777777777777777333345654 7777777777777776642 334556
Q ss_pred cCCCCceEEEEEecChh--hHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137 81 LGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE 158 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 158 (312)
..+++|+.++++.+... ....+.+++ +|+.|++.++.... ..+..++.+++|++|+++++.-...++ ..+.
T Consensus 209 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~----~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~ 281 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLT----SLNHLDLVYNNLTG--PIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIF 281 (968)
T ss_pred cCcCCccEEECcCCccCCcCChhHhcCC----CCCEEECcCceecc--ccChhHhCCCCCCEEECcCCeeeccCc-hhHh
Confidence 66667777766654332 223445555 66677666553211 222456666677777766542211111 1111
Q ss_pred cccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeecc
Q 045137 159 IVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCR 204 (312)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~ 204 (312)
.+++|++|++++|.....+| .+..+++|++|++.+|.
T Consensus 282 ---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 282 ---------SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred ---------hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 45666666666662222344 45556666666665554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.65 E-value=5.5e-16 Score=155.38 Aligned_cols=232 Identities=19% Similarity=0.150 Sum_probs=126.2
Q ss_pred CcccCCCCCc-cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 1 LLDISHTTIR-ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 1 ~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
+|+|++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.. ..+..
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~---------------~~p~~ 231 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSG---------------EIPYE 231 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCC---------------cCChh
Confidence 4789999876 78899999999999999999444457776 8999999999999988752 33445
Q ss_pred ccCCCCceEEEEEecChh--hHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecc
Q 045137 80 LLGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT 157 (312)
Q Consensus 80 l~~L~~L~~l~l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 157 (312)
+..+++|+.|+++.+... ....+.+++ +|+.|++.++.... ..+..+..+++|++|+++++. +.......+
T Consensus 232 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~----~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~ 304 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLK----NLQYLFLYQNKLSG--PIPPSIFSLQKLISLDLSDNS-LSGEIPELV 304 (968)
T ss_pred HhcCCCCCEEECcCceeccccChhHhCCC----CCCEEECcCCeeec--cCchhHhhccCcCEEECcCCe-eccCCChhH
Confidence 566666777766654332 222444555 56666666543211 122345556666666666542 221111111
Q ss_pred ccccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccC-ccccC-----------CCCCCC
Q 045137 158 EIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVG-KIAEN-----------PEMMGH 224 (312)
Q Consensus 158 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~-----------~~~~~~ 224 (312)
. .+++|+.|++++|.....+| .+..+++|+.|++++|.....+.... ....+ ......
T Consensus 305 ~---------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 305 I---------QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred c---------CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 1 44555555555552222233 34445555555555443321110000 00000 000012
Q ss_pred CccCCCcCeeeccccccccccccCCcCCCCccEEEecCCC
Q 045137 225 ISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACD 264 (312)
Q Consensus 225 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 264 (312)
...+++|+.|.+.++.-...++.....+++|+.|++.+|.
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 2234556666666543222333334567778888877764
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.62 E-value=4.7e-16 Score=150.69 Aligned_cols=292 Identities=32% Similarity=0.468 Sum_probs=190.9
Q ss_pred CcccCCC-CCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCC-c----------c
Q 045137 1 LLDISHT-TIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPED-S----------V 68 (312)
Q Consensus 1 ~L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~-~----------~ 68 (312)
+||||+| .+.++|++|+.|.+||||+++++ .+.++|.+ +++++.|++|++..+........+.. . .
T Consensus 575 VLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 575 VLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred EEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 4799977 67899999999999999999999 89999998 99999999999987765432211100 0 0
Q ss_pred ccCCccchhhhccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcC
Q 045137 69 LFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIE 148 (312)
Q Consensus 69 ~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 148 (312)
....+.....++..|++|+.+.+..........+..+..+....+.+.+.+ .........+..+.+|+.|.+.+|..
T Consensus 653 ~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~---~~~~~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 653 ALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG---CSKRTLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred ccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc---cccceeecccccccCcceEEEEcCCC
Confidence 011233444455555555555554333322233333332222333333322 12223336778889999999998865
Q ss_pred cceeeeeccccccccCCCCc-ccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCcc
Q 045137 149 LEELKIDYTEIVRKRREPFV-FHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISP 227 (312)
Q Consensus 149 l~~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (312)
.+... .+... .... . |+++..+.+.+|+..+++.|....|+|++|.+..|...+++++...... ........
T Consensus 730 ~e~~~-~~~~~---~~~~-~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~--~l~~~i~~ 802 (889)
T KOG4658|consen 730 SEIVI-EWEES---LIVL-LCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL--ELKELILP 802 (889)
T ss_pred chhhc-ccccc---cchh-hhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh--hcccEEec
Confidence 43221 11100 0000 2 6788888889998888877888899999999999999999877543321 11112455
Q ss_pred CCCcCee-eccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCcccccc--ceEeeehH-hhhhhccccchhhhhc
Q 045137 228 FENLKSL-DLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKER--KFVIRGEE-DWWNRLQWEDEATQIA 303 (312)
Q Consensus 228 ~~~L~~L-~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~--l~~i~~~~-~~~~~~~~~~~~~~~~ 303 (312)
|+.+..+ .+.+.+.+..+......+++|+.+.+..||++..+|......... -..+.+++ +|-+.+.|++++|...
T Consensus 803 f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 882 (889)
T KOG4658|consen 803 FNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLR 882 (889)
T ss_pred ccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhh
Confidence 6667777 577777777777666678889999999999999999865544322 33444444 4556699999999877
Q ss_pred c
Q 045137 304 F 304 (312)
Q Consensus 304 ~ 304 (312)
|
T Consensus 883 ~ 883 (889)
T KOG4658|consen 883 F 883 (889)
T ss_pred c
Confidence 6
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.59 E-value=3.9e-17 Score=146.87 Aligned_cols=236 Identities=20% Similarity=0.214 Sum_probs=128.6
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
||||+|++.+.|.++..-+++.+|||++| .|..||..++-++..|-.|++++|.+..+| ..+.
T Consensus 108 lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LP----------------PQ~R 170 (1255)
T KOG0444|consen 108 LDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLP----------------PQIR 170 (1255)
T ss_pred eecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcC----------------HHHH
Confidence 67888888888888888888888888888 788888887788888888888888776544 3444
Q ss_pred CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEe------------------
Q 045137 82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWI------------------ 143 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l------------------ 143 (312)
.|.+|++|.++.+....++ +..++.+. +|+.|.+++..+ +...++.++..+.+|+.+++
T Consensus 171 RL~~LqtL~Ls~NPL~hfQ-LrQLPsmt-sL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~L 247 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQ-LRQLPSMT-SLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNL 247 (1255)
T ss_pred HHhhhhhhhcCCChhhHHH-HhcCccch-hhhhhhcccccc-hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhh
Confidence 5555566666655543332 22233111 333344443322 22233344444444444444
Q ss_pred -----ccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccCcc--
Q 045137 144 -----DNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVGKI-- 215 (312)
Q Consensus 144 -----~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~-- 215 (312)
+++ .++.+....- ...+|..|+++.| .++.+| .+-++++|+.|...++...-+-+++..+
T Consensus 248 rrLNLS~N-~iteL~~~~~----------~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 248 RRLNLSGN-KITELNMTEG----------EWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred heeccCcC-ceeeeeccHH----------HHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 433 3333332221 3455666666665 555555 5556677777766555432222221100
Q ss_pred c----------cCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCC
Q 045137 216 A----------ENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLP 270 (312)
Q Consensus 216 ~----------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~ 270 (312)
. .+.-++..+.-|++|+.|.+.. +.|-.++....-++.|+.|++...++|..-|
T Consensus 316 ~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 0 0000011223344555555533 3455555555567777777777777777433
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.57 E-value=2.8e-14 Score=144.43 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=30.6
Q ss_pred CCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCC
Q 045137 224 HISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPL 271 (312)
Q Consensus 224 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 271 (312)
..+.+++|+.|++.+|..++.++... .+++|+.|++++|.+++.+|.
T Consensus 797 si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 797 SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence 34556777777777777776665443 466777777777776665553
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.54 E-value=5.4e-16 Score=138.41 Aligned_cols=244 Identities=18% Similarity=0.201 Sum_probs=125.1
Q ss_pred cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
||||-|.|+++| .+|..=.++++|+|++| .|+.+..+.|..+.+|.+|.++.|.+..+| +..+
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp---------------~r~F 217 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLP---------------QRSF 217 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccC---------------HHHh
Confidence 567777777766 55555567777777777 677666666777777777777777665533 3334
Q ss_pred cCCCCceEEEEEecChh-----hHHHHhhcccc---c--------------ccceEEEEeecCCCccccchhhhcCcccc
Q 045137 81 LGLKYLEVLELTLGSYH-----ALQILLSSNKL---K--------------SCIRSLYLYLTGDKKSIIDATAFTDLNHL 138 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~-----~~~~l~~l~~l---~--------------~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 138 (312)
++|++|+.|++..+.+. .|+++..+..+ + ..+++|++.... ...+.. ..+.++..|
T Consensus 218 k~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~-g~lfgLt~L 295 (873)
T KOG4194|consen 218 KRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNE-GWLFGLTSL 295 (873)
T ss_pred hhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch-hhhhhc-ccccccchh
Confidence 44555555554433321 22222211111 0 133333333221 111111 234455666
Q ss_pred ceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceeccc----
Q 045137 139 NELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISV---- 212 (312)
Q Consensus 139 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~---- 212 (312)
+.|+++.+ .+..+...... ++++|+.|+|++| .++.++ .+..+..|+.|.++++......-+.
T Consensus 296 ~~L~lS~N-aI~rih~d~Ws---------ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l 364 (873)
T KOG4194|consen 296 EQLDLSYN-AIQRIHIDSWS---------FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL 364 (873)
T ss_pred hhhccchh-hhheeecchhh---------hcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh
Confidence 66666643 45555444333 6677777777776 666554 3444555555555444321000000
Q ss_pred Cccc---------cC--CCCCCCCccCCCcCeeeccccccccccccC-CcCCCCccEEEecCCCCCCCCCCCCccc
Q 045137 213 GKIA---------EN--PEMMGHISPFENLKSLDLSYLPELKSIFWK-PLPFTHLKEMGVRACDQLRKLPLDSNSA 276 (312)
Q Consensus 213 ~~~~---------~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~~ 276 (312)
.... ++ ......-.+++.|+.|.+.+ ++++.++.. +..++.||.|++.+ ..+.++....+..
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEP 438 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeeccccccc
Confidence 0000 00 00001223478888888877 467777644 44577888888877 3455555554444
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.50 E-value=8.9e-15 Score=130.76 Aligned_cols=246 Identities=21% Similarity=0.193 Sum_probs=151.2
Q ss_pred cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
||+|+|.+.++. ++|.++++|+.+++.+| .+..+|.. ..-..+|+.|++.+|.+.. ..-+.+
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f-~~~sghl~~L~L~~N~I~s---------------v~se~L 145 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRF-GHESGHLEKLDLRHNLISS---------------VTSEEL 145 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccc-cccccceeEEeeecccccc---------------ccHHHH
Confidence 789999998874 88899999999999999 89999984 5556679999999998854 444567
Q ss_pred cCCCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137 81 LGLKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE 158 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 158 (312)
..+.-|+.++++.+.+..++ .+.+.. ++++|++...+ ++.... ..+..+.+|..|.++.+ .++.++...++
T Consensus 146 ~~l~alrslDLSrN~is~i~~~sfp~~~----ni~~L~La~N~-It~l~~-~~F~~lnsL~tlkLsrN-rittLp~r~Fk 218 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISEIPKPSFPAKV----NIKKLNLASNR-ITTLET-GHFDSLNSLLTLKLSRN-RITTLPQRSFK 218 (873)
T ss_pred HhHhhhhhhhhhhchhhcccCCCCCCCC----CceEEeecccc-cccccc-ccccccchheeeecccC-cccccCHHHhh
Confidence 77777888888766554443 222323 77888777643 333333 45566667777777754 66666666554
Q ss_pred cccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceeccc----CccccC-------C-CCCCC
Q 045137 159 IVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISV----GKIAEN-------P-EMMGH 224 (312)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~-------~-~~~~~ 224 (312)
.+++|+.|+|..| .++-+. .+.++++|+.|++..+.....--+. .....+ . .....
T Consensus 219 ---------~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 219 ---------RLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred ---------hcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence 5777777777766 555543 4556777777776655422111000 000000 0 00012
Q ss_pred CccCCCcCeeeccccccccccccCC-cCCCCccEEEecCCCCCCCCCCCCccccccceEe
Q 045137 225 ISPFENLKSLDLSYLPELKSIFWKP-LPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVI 283 (312)
Q Consensus 225 ~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i 283 (312)
.-++.+|++|++++. .+..+.... .-+++|+.|++++ .++++++.+.......+++.
T Consensus 289 lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred ccccchhhhhccchh-hhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhh
Confidence 334556666666653 344443332 2256777777776 56777776666554444443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.50 E-value=1.4e-15 Score=136.92 Aligned_cols=234 Identities=18% Similarity=0.115 Sum_probs=151.3
Q ss_pred cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccC----CCC---ccccC--
Q 045137 2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEA----PED---SVLFG-- 71 (312)
Q Consensus 2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~----~~~---~~~~~-- 71 (312)
|+||+|+|..+| +-|-+|.-|-+|||++| .+..+|+. +.++.+|++|.+++|.+.-+... ... +-+.+
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence 789999999999 66779999999999999 89999998 99999999999999876432110 000 01111
Q ss_pred -CccchhhhccCCCCceEEEEEecChhhHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCc
Q 045137 72 -GGEVLIQELLGLKYLEVLELTLGSYHALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIEL 149 (312)
Q Consensus 72 -~~~~~~~~l~~L~~L~~l~l~~~~~~~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 149 (312)
.....+..+..|.+|+.++++.++...++ .+.+++ +|++|++++... +... ...+...+|++|+++.+ ++
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~----~LrrLNLS~N~i-teL~--~~~~~W~~lEtLNlSrN-QL 280 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR----NLRRLNLSGNKI-TELN--MTEGEWENLETLNLSRN-QL 280 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh----hhheeccCcCce-eeee--ccHHHHhhhhhhccccc-hh
Confidence 12334455666778888888877665554 456677 888998887532 2222 24455678999999975 77
Q ss_pred ceeeeeccccccccCCCCcccccceEeecCCCCcc--cCC-ccCCCCCCceEEEeeccccceeccc-C--------cc--
Q 045137 150 EELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLK--DST-FLAFAPNLKSLSLFKCRAMEEIISV-G--------KI-- 215 (312)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~-~l~~l~~L~~L~l~~~~~~~~~~~~-~--------~~-- 215 (312)
..++.... .+++|+.|++.+| ++. .+| -+|++.+|+.++..++. ++.+... . ..
T Consensus 281 t~LP~avc----------KL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 281 TVLPDAVC----------KLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred ccchHHHh----------hhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccc
Confidence 77775555 7899999999888 443 366 46666666655554432 1111000 0 00
Q ss_pred ccCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccE
Q 045137 216 AENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKE 257 (312)
Q Consensus 216 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 257 (312)
..+-.++..+..++-|+.|++...++|---+....+-..|+-
T Consensus 349 NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lef 390 (1255)
T KOG0444|consen 349 NRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEF 390 (1255)
T ss_pred cceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhccee
Confidence 000011235677899999999999888544433333344443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.30 E-value=2.7e-13 Score=116.47 Aligned_cols=95 Identities=17% Similarity=0.097 Sum_probs=65.4
Q ss_pred cccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccC----------ccccCCCCCC-CCccCCCcCeee
Q 045137 168 VFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVG----------KIAENPEMMG-HISPFENLKSLD 235 (312)
Q Consensus 168 ~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~----------~~~~~~~~~~-~~~~~~~L~~L~ 235 (312)
.+++|+.|+++++ .+.++| .++.+-.|+.|+|+.+..-..+-... .......+.. ....+.+|..|+
T Consensus 433 ~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLD 511 (565)
T KOG0472|consen 433 QLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLD 511 (565)
T ss_pred hhhcceeeecccc-hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceec
Confidence 7888999999888 777788 77788889999988764322211100 0000011111 356678888888
Q ss_pred ccccccccccccCCcCCCCccEEEecCCC
Q 045137 236 LSYLPELKSIFWKPLPFTHLKEMGVRACD 264 (312)
Q Consensus 236 l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 264 (312)
+.+ ..+..++...+.+.+|++|++.+.+
T Consensus 512 L~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 512 LQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cCC-CchhhCChhhccccceeEEEecCCc
Confidence 877 5788898889999999999998854
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.27 E-value=1.3e-13 Score=105.47 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=68.9
Q ss_pred hCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecCh
Q 045137 17 KLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 96 (312)
Q Consensus 17 ~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~ 96 (312)
-.+.+.+.|.|++| .+..+|++ |..+.+|+.|++.+|++.++| ..+..+++|+.+++..+..
T Consensus 30 f~~s~ITrLtLSHN-Kl~~vppn-ia~l~nlevln~~nnqie~lp----------------~~issl~klr~lnvgmnrl 91 (264)
T KOG0617|consen 30 FNMSNITRLTLSHN-KLTVVPPN-IAELKNLEVLNLSNNQIEELP----------------TSISSLPKLRILNVGMNRL 91 (264)
T ss_pred cchhhhhhhhcccC-ceeecCCc-HHHhhhhhhhhcccchhhhcC----------------hhhhhchhhhheecchhhh
Confidence 34445555555665 55555555 556666666666555554322 3334444455554443322
Q ss_pred hhHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceE
Q 045137 97 HALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLV 175 (312)
Q Consensus 97 ~~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L 175 (312)
...+ .+..++ .|+.|++.+..- .....+..+..|..|+.|++++. ..+.++...- .+.+|+.|
T Consensus 92 ~~lprgfgs~p----~levldltynnl-~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg----------~lt~lqil 155 (264)
T KOG0617|consen 92 NILPRGFGSFP----ALEVLDLTYNNL-NENSLPGNFFYMTTLRALYLGDN-DFEILPPDVG----------KLTNLQIL 155 (264)
T ss_pred hcCccccCCCc----hhhhhhcccccc-ccccCCcchhHHHHHHHHHhcCC-CcccCChhhh----------hhcceeEE
Confidence 1111 222222 233333332211 11111122333445555555543 3444433322 45555555
Q ss_pred eecCCCCcccCC-ccCCCCCCceEEEeecc
Q 045137 176 TIYSCHKLKDST-FLAFAPNLKSLSLFKCR 204 (312)
Q Consensus 176 ~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~ 204 (312)
.++++ ++-.+| .++.+..|+.|+|.++.
T Consensus 156 ~lrdn-dll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 156 SLRDN-DLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred eeccC-chhhCcHHHHHHHHHHHHhcccce
Confidence 55555 333444 55555566666655554
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.26 E-value=2.7e-11 Score=115.75 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=43.4
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY 61 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~ 61 (312)
|+++++.++.+|..+. .+|+.|++.+| .++.+|.. +++|++|++++|.+..+|
T Consensus 206 LdLs~~~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~l----p~~Lk~LdLs~N~LtsLP 258 (788)
T PRK15387 206 LNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPAL----PPELRTLEVSGNQLTSLP 258 (788)
T ss_pred EEcCCCCCCcCCcchh--cCCCEEEccCC-cCCCCCCC----CCCCcEEEecCCccCccc
Confidence 6889999999998775 48999999998 78888863 578999999998887654
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.21 E-value=5.4e-14 Score=120.68 Aligned_cols=240 Identities=21% Similarity=0.184 Sum_probs=116.4
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccC-------Ccc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFG-------GGE 74 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-------~~~ 74 (312)
|.+++|.+..+...+.+|..|.+|++++| .+..+|+. ++.+..++.++.++|++.++|.++....... ...
T Consensus 50 lils~N~l~~l~~dl~nL~~l~vl~~~~n-~l~~lp~a-ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~ 127 (565)
T KOG0472|consen 50 LILSHNDLEVLREDLKNLACLTVLNVHDN-KLSQLPAA-IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK 127 (565)
T ss_pred hhhccCchhhccHhhhcccceeEEEeccc-hhhhCCHH-HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee
Confidence 45667777777667777777777777777 66677765 7777777777777777665554332221110 011
Q ss_pred chhhhccCCCCceEEEEEecChhhHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceee
Q 045137 75 VLIQELLGLKYLEVLELTLGSYHALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELK 153 (312)
Q Consensus 75 ~~~~~l~~L~~L~~l~l~~~~~~~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~ 153 (312)
..+..++.+-.++.++...+...+.+ .+.++. .+..+.+.+. .....++..-.|+.|+.|+..++ .++.++
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~----~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP 199 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS----KLSKLDLEGN---KLKALPENHIAMKRLKHLDCNSN-LLETLP 199 (565)
T ss_pred ecCchHHHHhhhhhhhccccccccCchHHHHHH----HHHHhhcccc---chhhCCHHHHHHHHHHhcccchh-hhhcCC
Confidence 11222222222332222222221111 222222 1222222211 11111122222445555554332 333333
Q ss_pred eeccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCe
Q 045137 154 IDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKS 233 (312)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 233 (312)
.+.- .+.+|..|++..+ ++..+|.++++..|+++++..+.. +.+ +. .....++++..
T Consensus 200 ~~lg----------~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~i-~~l-pa----------e~~~~L~~l~v 256 (565)
T KOG0472|consen 200 PELG----------GLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQI-EML-PA----------EHLKHLNSLLV 256 (565)
T ss_pred hhhc----------chhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccHH-Hhh-HH----------HHhccccccee
Confidence 2221 4555666666665 555566666666666666544432 211 10 13345566666
Q ss_pred eeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccc
Q 045137 234 LDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSA 276 (312)
Q Consensus 234 L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~ 276 (312)
|++.+ .++++.+++..-+.+|+.|++++ ..++.+|....+.
T Consensus 257 LDLRd-Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl 297 (565)
T KOG0472|consen 257 LDLRD-NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL 297 (565)
T ss_pred eeccc-cccccCchHHHHhhhhhhhcccC-CccccCCcccccc
Confidence 66666 35666666655566666666665 3555555544433
No 14
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.19 E-value=1e-11 Score=120.85 Aligned_cols=219 Identities=24% Similarity=0.290 Sum_probs=123.1
Q ss_pred Ccccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCce
Q 045137 9 IRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLE 87 (312)
Q Consensus 9 i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 87 (312)
+..++ +.|..++.|++|||++|..+..+|.. |+.+-+||+|+++++.+..+ +.++++|+.|.
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~L----------------P~~l~~Lk~L~ 621 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHL----------------PSGLGNLKKLI 621 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCcccc----------------chHHHHHHhhh
Confidence 55666 44889999999999999899999998 99999999999999988754 45667777777
Q ss_pred EEEEEecCh-hhHHHH-hhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCC
Q 045137 88 VLELTLGSY-HALQIL-LSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRRE 165 (312)
Q Consensus 88 ~l~l~~~~~-~~~~~l-~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 165 (312)
.|++...+. ..++.. ..+. +||.|.+.......+......+..+.+|+.+.+..... . +.....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~----~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~-~~e~l~-------- 687 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQ----SLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-L-LLEDLL-------- 687 (889)
T ss_pred eeccccccccccccchhhhcc----cccEEEeeccccccchhhHHhhhcccchhhheeecchh-H-hHhhhh--------
Confidence 777765432 122222 2244 77777777544223333334555666666666653322 0 000001
Q ss_pred CCcccccc----eEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCc-cCCCcCeeeccccc
Q 045137 166 PFVFHSLH----LVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHIS-PFENLKSLDLSYLP 240 (312)
Q Consensus 166 ~~~~~~L~----~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 240 (312)
...+|. .+.+.+|...+....++.+.+|++|.|.+|...+..+..... .... .|+++..+...+|.
T Consensus 688 --~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~-------~~~~~~f~~l~~~~~~~~~ 758 (889)
T KOG4658|consen 688 --GMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES-------LIVLLCFPNLSKVSILNCH 758 (889)
T ss_pred --hhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccc-------cchhhhHHHHHHHHhhccc
Confidence 222222 233333323333446677778888888777664432210000 0111 24445554444554
Q ss_pred cccccccCCcCCCCccEEEecCCCCCCC
Q 045137 241 ELKSIFWKPLPFTHLKEMGVRACDQLRK 268 (312)
Q Consensus 241 ~l~~~~~~~~~~~~L~~L~i~~c~~L~~ 268 (312)
.++..... .-.|+|++|.+..|+.+.+
T Consensus 759 ~~r~l~~~-~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 759 MLRDLTWL-LFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred cccccchh-hccCcccEEEEeccccccc
Confidence 44443221 2245555555555555444
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.16 E-value=1.4e-12 Score=122.45 Aligned_cols=55 Identities=33% Similarity=0.425 Sum_probs=34.3
Q ss_pred CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccc
Q 045137 1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGG 57 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~ 57 (312)
|+++|+|.++.+|+.++.+.+|+.+++.+| .+..+|.. +..+.+|+.|.+..|.+
T Consensus 245 ~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~r-i~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 245 YLDISHNNLSNLPEWIGACANLEALNANHN-RLVALPLR-ISRITSLVSLSAAYNEL 299 (1081)
T ss_pred eeecchhhhhcchHHHHhcccceEecccch-hHHhhHHH-HhhhhhHHHHHhhhhhh
Confidence 456677777777777777777777777766 55555544 55555555555555444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.12 E-value=1.4e-10 Score=110.97 Aligned_cols=220 Identities=17% Similarity=0.109 Sum_probs=114.8
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
|++++|+++.+|. ..++|++|++++| .+..+|.. .++|+.|++.+|.+..+|..+..+.........+..+.
T Consensus 227 L~L~~N~Lt~LP~---lp~~Lk~LdLs~N-~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP 298 (788)
T PRK15387 227 LVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPVL----PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLP 298 (788)
T ss_pred EEccCCcCCCCCC---CCCCCcEEEecCC-ccCcccCc----ccccceeeccCCchhhhhhchhhcCEEECcCCcccccc
Confidence 6788899999985 3689999999999 88888753 36788888888877665432111110000000111111
Q ss_pred -CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc-
Q 045137 82 -GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI- 159 (312)
Q Consensus 82 -~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~- 159 (312)
.+++|+.|+++.+....++.+ ...|+.|.+.++.... + +. ...+|++|+++++ .+..++......
T Consensus 299 ~~p~~L~~LdLS~N~L~~Lp~l------p~~L~~L~Ls~N~L~~---L-P~--lp~~Lq~LdLS~N-~Ls~LP~lp~~L~ 365 (788)
T PRK15387 299 VLPPGLQELSVSDNQLASLPAL------PSELCKLWAYNNQLTS---L-PT--LPSGLQELSVSDN-QLASLPTLPSELY 365 (788)
T ss_pred ccccccceeECCCCccccCCCC------cccccccccccCcccc---c-cc--cccccceEecCCC-ccCCCCCCCcccc
Confidence 124577777766554433221 1145555555432111 1 00 1136777777654 444332110000
Q ss_pred --------ccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCc
Q 045137 160 --------VRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENL 231 (312)
Q Consensus 160 --------~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 231 (312)
....+. ...+|+.|++++| .+..+|.. .++|+.|++++|.. ..+ + ..+.+|
T Consensus 366 ~L~Ls~N~L~~LP~--l~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~L-ssI-P--------------~l~~~L 424 (788)
T PRK15387 366 KLWAYNNRLTSLPA--LPSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNRL-TSL-P--------------MLPSGL 424 (788)
T ss_pred eehhhccccccCcc--cccccceEEecCC-cccCCCCc--ccCCCEEEccCCcC-CCC-C--------------cchhhh
Confidence 000111 2235556666655 44444422 24566666665542 211 1 112456
Q ss_pred CeeeccccccccccccCCcCCCCccEEEecCCC
Q 045137 232 KSLDLSYLPELKSIFWKPLPFTHLKEMGVRACD 264 (312)
Q Consensus 232 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 264 (312)
+.|+++++ .++.++.....+++|+.+++++++
T Consensus 425 ~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 425 LSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 77777663 566666666677888888887753
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.10 E-value=1.1e-10 Score=112.10 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=27.5
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccccc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF 60 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~ 60 (312)
|+++++.++.+|..+. ++|+.|+|++| .+..+|.. +. .+|++|++++|.+..+
T Consensus 183 L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~-l~--~nL~~L~Ls~N~LtsL 235 (754)
T PRK15370 183 LRLKILGLTTIPACIP--EQITTLILDNN-ELKSLPEN-LQ--GNIKTLYANSNQLTSI 235 (754)
T ss_pred EEeCCCCcCcCCcccc--cCCcEEEecCC-CCCcCChh-hc--cCCCEEECCCCccccC
Confidence 3455555555554332 35556666665 55555554 21 3555666655555443
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.05 E-value=1.4e-11 Score=105.73 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=53.6
Q ss_pred cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEec-ccccccccCC
Q 045137 2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLG-TGGFIFYEAP 64 (312)
Q Consensus 2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~-~~~~~~~~~~ 64 (312)
++|.-|.|+.|| +.|+.+++|+.|||++| .|..|.+++|.++++|..|-+.+ |.++.+|...
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred EEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 567889999998 88999999999999999 89999888899999998888877 8888776543
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.04 E-value=6.8e-10 Score=106.65 Aligned_cols=203 Identities=19% Similarity=0.191 Sum_probs=138.8
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
|+|++|.++.+|..+. .+|++|++++| .+..+|.. +. .+|+.|++++|.+..+|. .+.
T Consensus 204 L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~-l~--~~L~~L~Ls~N~L~~LP~----------------~l~ 261 (754)
T PRK15370 204 LILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPAT-LP--DTIQEMELSINRITELPE----------------RLP 261 (754)
T ss_pred EEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChh-hh--ccccEEECcCCccCcCCh----------------hHh
Confidence 7889999999997665 59999999999 78889876 43 479999999998876542 111
Q ss_pred CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137 82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR 161 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 161 (312)
.+|+.|+++.+....++. .+ ..+|+.|+++++.-.. ++..+ .++|+.|+++++ .+..++..
T Consensus 262 --s~L~~L~Ls~N~L~~LP~--~l---~~sL~~L~Ls~N~Lt~---LP~~l--p~sL~~L~Ls~N-~Lt~LP~~------ 322 (754)
T PRK15370 262 --SALQSLDLFHNKISCLPE--NL---PEELRYLSVYDNSIRT---LPAHL--PSGITHLNVQSN-SLTALPET------ 322 (754)
T ss_pred --CCCCEEECcCCccCcccc--cc---CCCCcEEECCCCcccc---Ccccc--hhhHHHHHhcCC-ccccCCcc------
Confidence 367888888776654442 11 1278899988763221 11111 246888888865 55544321
Q ss_pred ccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccc
Q 045137 162 KRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPE 241 (312)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 241 (312)
.+++|+.|++++| .++.+|. .-.++|+.|++++|.. ..+ + ....+.|++|+++++ .
T Consensus 323 ------l~~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~Ls~N~L-~~L-P-------------~~lp~~L~~LdLs~N-~ 378 (754)
T PRK15370 323 ------LPPGLKTLEAGEN-ALTSLPA-SLPPELQVLDVSKNQI-TVL-P-------------ETLPPTITTLDVSRN-A 378 (754)
T ss_pred ------ccccceeccccCC-ccccCCh-hhcCcccEEECCCCCC-CcC-C-------------hhhcCCcCEEECCCC-c
Confidence 4578999999998 6777772 1137999999998864 322 1 112368999999986 5
Q ss_pred ccccccCCcCCCCccEEEecCCCCCCCCCCC
Q 045137 242 LKSIFWKPLPFTHLKEMGVRACDQLRKLPLD 272 (312)
Q Consensus 242 l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~ 272 (312)
+..++... .+.|+.|+++++ +|+.+|..
T Consensus 379 Lt~LP~~l--~~sL~~LdLs~N-~L~~LP~s 406 (754)
T PRK15370 379 LTNLPENL--PAALQIMQASRN-NLVRLPES 406 (754)
T ss_pred CCCCCHhH--HHHHHHHhhccC-CcccCchh
Confidence 66665432 246888999884 77887754
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=1.8e-10 Score=101.06 Aligned_cols=180 Identities=20% Similarity=0.125 Sum_probs=84.4
Q ss_pred cccCCCCCc--cccHHhhCCCCCcEEecCCCCCcc-----ccCchhhhccccccEEEEecccccccccCCCCccccCCcc
Q 045137 2 LDISHTTIR--ELPEELKLLVNLKCLNLRWTGALI-----RIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGE 74 (312)
Q Consensus 2 L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~-----~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 74 (312)
|+|.++.++ ..+.-+..+.+|+.|++++| .+. .++.. +...++|+++++.++.+...+.. ..
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~---------~~ 71 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRG---------LQ 71 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchH---------HH
Confidence 455555553 34455566666777777777 442 23332 45556677777666544310000 01
Q ss_pred chhhhccCCCCceEEEEEecChh--hHHHHhhcccccccceEEEEeecCCCc--cccchhhhcCc-cccceEEeccCcCc
Q 045137 75 VLIQELLGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGDKK--SIIDATAFTDL-NHLNELWIDNGIEL 149 (312)
Q Consensus 75 ~~~~~l~~L~~L~~l~l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~~~--~~~~~~~l~~l-~~L~~L~l~~~~~l 149 (312)
.....+..+.+|+.++++.+... ....+..+... .+|++|+++++.... ...+...+..+ ++|+.|++++|. +
T Consensus 72 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l 149 (319)
T cd00116 72 SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-L 149 (319)
T ss_pred HHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-C
Confidence 22234445666666666644332 11222222211 136666666653221 01111334444 566777776653 2
Q ss_pred ceeee----eccccccccCCCCcccccceEeecCCCCccc--CC----ccCCCCCCceEEEeecc
Q 045137 150 EELKI----DYTEIVRKRREPFVFHSLHLVTIYSCHKLKD--ST----FLAFAPNLKSLSLFKCR 204 (312)
Q Consensus 150 ~~l~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~----~l~~l~~L~~L~l~~~~ 204 (312)
..... ..+. .+++|++|++++| .+.+ ++ .+..+++|++|++++|.
T Consensus 150 ~~~~~~~~~~~~~---------~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 150 EGASCEALAKALR---------ANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred CchHHHHHHHHHH---------hCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 21100 0111 3456666666666 4432 11 23334566666666664
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.96 E-value=1.9e-11 Score=93.71 Aligned_cols=153 Identities=25% Similarity=0.300 Sum_probs=115.7
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
|.||+|.++.+|..|..|++|+.|++.+| .+..+|.+ ++.+++|++|++.-|... ..+.+++
T Consensus 38 LtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~-issl~klr~lnvgmnrl~----------------~lprgfg 99 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTS-ISSLPKLRILNVGMNRLN----------------ILPRGFG 99 (264)
T ss_pred hhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChh-hhhchhhhheecchhhhh----------------cCccccC
Confidence 57899999999999999999999999999 99999998 999999999999988765 4567778
Q ss_pred CCCCceEEEEEecChh--hHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137 82 GLKYLEVLELTLGSYH--ALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE 158 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~--~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 158 (312)
.++-|+++++..+... .++ .+..+. .|+.|++++. ....++..++++.+|+-|.+.+. .+-.++.+.-
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~----tlralyl~dn---dfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig- 170 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMT----TLRALYLGDN---DFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIG- 170 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHH----HHHHHHhcCC---CcccCChhhhhhcceeEEeeccC-chhhCcHHHH-
Confidence 8888999998866442 122 233333 4555655543 44555578888999999998876 4444443332
Q ss_pred cccccCCCCcccccceEeecCCCCcccCC-ccCC
Q 045137 159 IVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAF 191 (312)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~ 191 (312)
.+.+|++|++.++ +++-+| .++.
T Consensus 171 ---------~lt~lrelhiqgn-rl~vlppel~~ 194 (264)
T KOG0617|consen 171 ---------DLTRLRELHIQGN-RLTVLPPELAN 194 (264)
T ss_pred ---------HHHHHHHHhcccc-eeeecChhhhh
Confidence 6889999999998 777766 4443
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.95 E-value=2e-11 Score=114.81 Aligned_cols=208 Identities=22% Similarity=0.199 Sum_probs=142.0
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCcccc--CCccchhhh
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLF--GGGEVLIQE 79 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 79 (312)
++..+|.+..+|..+....+|++|.+..| .+.++|+. ..+++.|++|++..|.+..+|..+...... .........
T Consensus 269 l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 269 LNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred ecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence 56678899999999999999999999999 89999986 788999999999999998777532111100 000000001
Q ss_pred ccC--------CCCceEEEEEec--ChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCc
Q 045137 80 LLG--------LKYLEVLELTLG--SYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIEL 149 (312)
Q Consensus 80 l~~--------L~~L~~l~l~~~--~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 149 (312)
+.. +..|+.|++..+ +...++.+...+ +||.|++++..-.. +.- ..+.++..|+.|+++++ .+
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~----hLKVLhLsyNrL~~-fpa-s~~~kle~LeeL~LSGN-kL 419 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK----HLKVLHLSYNRLNS-FPA-SKLRKLEELEELNLSGN-KL 419 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCcccccchhhhcccc----ceeeeeeccccccc-CCH-HHHhchHHhHHHhcccc-hh
Confidence 111 112333333322 223566666666 88888888764322 222 57788888999999986 67
Q ss_pred ceeeeeccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCC
Q 045137 150 EELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFE 229 (312)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (312)
+.++.... .+..|+.|...+| .+..+|.+..++.|+.++++.+. +....... .... |
T Consensus 420 ~~Lp~tva----------~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~-L~~~~l~~----------~~p~-p 476 (1081)
T KOG0618|consen 420 TTLPDTVA----------NLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSCNN-LSEVTLPE----------ALPS-P 476 (1081)
T ss_pred hhhhHHHH----------hhhhhHHHhhcCC-ceeechhhhhcCcceEEecccch-hhhhhhhh----------hCCC-c
Confidence 77774443 7889999988888 78888988899999999997665 34332111 1111 8
Q ss_pred CcCeeecccccc
Q 045137 230 NLKSLDLSYLPE 241 (312)
Q Consensus 230 ~L~~L~l~~~~~ 241 (312)
+|++|+++|...
T Consensus 477 ~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 477 NLKYLDLSGNTR 488 (1081)
T ss_pred ccceeeccCCcc
Confidence 999999998764
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=3.6e-10 Score=99.17 Aligned_cols=226 Identities=20% Similarity=0.106 Sum_probs=139.4
Q ss_pred cccCCCCC-----ccccHHhhCCCCCcEEecCCCCCccc-------cCchhhhccccccEEEEecccccccccCCCCccc
Q 045137 2 LDISHTTI-----RELPEELKLLVNLKCLNLRWTGALIR-------IPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVL 69 (312)
Q Consensus 2 L~Ls~~~i-----~~lp~~i~~L~~L~~L~L~~~~~~~~-------lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 69 (312)
|+++++.+ ..+++.+...++|++|+++++ .+.. ++. .+..+++|+.|++++|.+..
T Consensus 28 l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~---------- 95 (319)
T cd00116 28 LRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQ-GLTKGCGLQELDLSDNALGP---------- 95 (319)
T ss_pred EeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHH-HHHhcCceeEEEccCCCCCh----------
Confidence 67888887 346677888899999999998 5542 223 36778899999999988752
Q ss_pred cCCccchhhhccCC---CCceEEEEEecChh--hHH----HHhhc-ccccccceEEEEeecCCCc--cccchhhhcCccc
Q 045137 70 FGGGEVLIQELLGL---KYLEVLELTLGSYH--ALQ----ILLSS-NKLKSCIRSLYLYLTGDKK--SIIDATAFTDLNH 137 (312)
Q Consensus 70 ~~~~~~~~~~l~~L---~~L~~l~l~~~~~~--~~~----~l~~l-~~l~~~L~~L~l~~~~~~~--~~~~~~~l~~l~~ 137 (312)
.....+..+ ++|+.++++.+... ... .+..+ + +|+.|++.++.... ...+...+..+++
T Consensus 96 -----~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~----~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 166 (319)
T cd00116 96 -----DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP----ALEKLVLGRNRLEGASCEALAKALRANRD 166 (319)
T ss_pred -----hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCC----CceEEEcCCCcCCchHHHHHHHHHHhCCC
Confidence 122222223 45999999866543 111 23333 3 88999999875432 1223345666778
Q ss_pred cceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCccc-----CC-ccCCCCCCceEEEeeccccceecc
Q 045137 138 LNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKD-----ST-FLAFAPNLKSLSLFKCRAMEEIIS 211 (312)
Q Consensus 138 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~-~l~~l~~L~~L~l~~~~~~~~~~~ 211 (312)
|++|+++++ .+..-...... .....+++|++|++++| .+.+ +. .+..+++|++|++++|......+.
T Consensus 167 L~~L~l~~n-~l~~~~~~~l~-----~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 167 LKELNLANN-GIGDAGIRALA-----EGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred cCEEECcCC-CCchHHHHHHH-----HHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 999999976 34321111110 00004569999999998 5543 22 456789999999999864321110
Q ss_pred cCccccCCCCCCCCccCCCcCeeeccccccccc-----cccCCcCCCCccEEEecCC
Q 045137 212 VGKIAENPEMMGHISPFENLKSLDLSYLPELKS-----IFWKPLPFTHLKEMGVRAC 263 (312)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~i~~c 263 (312)
.... ......+.|++|.+.+|. ++. +......+++|+.++++++
T Consensus 240 -~l~~------~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 240 -ALAS------ALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred -HHHH------HHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 0000 001134789999999873 431 2122344688999999875
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=7.1e-10 Score=96.59 Aligned_cols=188 Identities=15% Similarity=0.086 Sum_probs=126.3
Q ss_pred hCCCCCcEEecCCCCCccccCc-hhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecC
Q 045137 17 KLLVNLKCLNLRWTGALIRIPR-GLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS 95 (312)
Q Consensus 17 ~~L~~L~~L~L~~~~~~~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~ 95 (312)
+++++|+...|+++ .+...+. ++...|++++.|+++.|-+..+- .....++.|++|+.|+++-+.
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~-------------~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWF-------------PVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHH-------------HHHHHHHhcccchhccccccc
Confidence 56888999999988 6666553 45788999999999998776532 555667788889888888665
Q ss_pred hhhHHH---HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCccccc
Q 045137 96 YHALQI---LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSL 172 (312)
Q Consensus 96 ~~~~~~---l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L 172 (312)
...+.+ -..++ +++.|.+..|.- ....+...+..+|+|+.|++..+..... ...... .+..|
T Consensus 184 l~~~~~s~~~~~l~----~lK~L~l~~CGl-s~k~V~~~~~~fPsl~~L~L~~N~~~~~-~~~~~~---------i~~~L 248 (505)
T KOG3207|consen 184 LSNFISSNTTLLLS----HLKQLVLNSCGL-SWKDVQWILLTFPSLEVLYLEANEIILI-KATSTK---------ILQTL 248 (505)
T ss_pred ccCCccccchhhhh----hhheEEeccCCC-CHHHHHHHHHhCCcHHHhhhhcccccce-ecchhh---------hhhHH
Confidence 433221 11233 788999998844 4566656777889999999987642211 111122 67889
Q ss_pred ceEeecCCCCccc--CCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccc
Q 045137 173 HLVTIYSCHKLKD--STFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYL 239 (312)
Q Consensus 173 ~~L~l~~~~~l~~--l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 239 (312)
+.|+|+++..+.. ++..+.+|.|+.|.+..|..-....+.. +.......||+|++|.+...
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~------~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV------ESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCc------cchhhhcccccceeeecccC
Confidence 9999999844432 3467789999999988875433221110 11123467899999988774
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=1.6e-09 Score=90.36 Aligned_cols=121 Identities=20% Similarity=0.225 Sum_probs=88.3
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
||||+|.|+.+.++++-+++++.|++++| .+..+.. +..+++|++|++++|.+.. ..+.=.
T Consensus 289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~Ls~----------------~~Gwh~ 349 (490)
T KOG1259|consen 289 LDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNLLAE----------------CVGWHL 349 (490)
T ss_pred ccccccchhhhhhhhhhccceeEEecccc-ceeeehh--hhhcccceEeecccchhHh----------------hhhhHh
Confidence 68899999999888899999999999998 7777766 8888999999999887642 112223
Q ss_pred CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137 82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG 146 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 146 (312)
+|-|+++|.+..+....+..+.++. +|..|++.+.+... ......++++|.|+.+.+.++
T Consensus 350 KLGNIKtL~La~N~iE~LSGL~KLY----SLvnLDl~~N~Ie~-ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETLSGLRKLY----SLVNLDLSSNQIEE-LDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhcCEeeeehhhhhHhhhhhhHhhh----hheeccccccchhh-HHHhcccccccHHHHHhhcCC
Confidence 5667778888777777777777776 67777777653322 222367777888877777764
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.5e-10 Score=94.03 Aligned_cols=202 Identities=18% Similarity=0.078 Sum_probs=125.1
Q ss_pred CCCcEEecCCCCCcccc-CchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhh
Q 045137 20 VNLKCLNLRWTGALIRI-PRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA 98 (312)
Q Consensus 20 ~~L~~L~L~~~~~~~~l-p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~ 98 (312)
.+|++|||++. .++.- --+++..|.+|+.|.+.++.+. ......+.+-.+|+.++++.+....
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~Ld---------------D~I~~~iAkN~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLD---------------DPIVNTIAKNSNLVRLNLSMCSGFT 248 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccC---------------cHHHHHHhccccceeeccccccccc
Confidence 36899999988 55532 1234688899999999988773 3555667777888889988554322
Q ss_pred HHHHhhcccccccceEEEEeecCCCccccchhhhc-CccccceEEeccCcCcceeeeeccccccccCCCCcccccceEee
Q 045137 99 LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFT-DLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTI 177 (312)
Q Consensus 99 ~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l 177 (312)
-....-+-..+..|..|+++.|...... +.-.+. --++|..|++++|.. .+....... +.. .+|+|.+||+
T Consensus 249 ~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rr--nl~~sh~~t---L~~--rcp~l~~LDL 320 (419)
T KOG2120|consen 249 ENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRR--NLQKSHLST---LVR--RCPNLVHLDL 320 (419)
T ss_pred hhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHh--hhhhhHHHH---HHH--hCCceeeecc
Confidence 2222222122227888888888543322 211111 124788889988632 122111110 000 6899999999
Q ss_pred cCCCCccc--CCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCc
Q 045137 178 YSCHKLKD--STFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHL 255 (312)
Q Consensus 178 ~~~~~l~~--l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L 255 (312)
++|-.+++ +-.+.+++.|++|+++.|..+.- +.....+..|.|.+|++.+|-.=+.+......+++|
T Consensus 321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p-----------~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~l 389 (419)
T KOG2120|consen 321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIP-----------ETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHL 389 (419)
T ss_pred ccccccCchHHHHHHhcchheeeehhhhcCCCh-----------HHeeeeccCcceEEEEeccccCchHHHHHHHhCccc
Confidence 99866766 23677899999999999976432 222356778999999998876433333323345554
Q ss_pred c
Q 045137 256 K 256 (312)
Q Consensus 256 ~ 256 (312)
+
T Consensus 390 k 390 (419)
T KOG2120|consen 390 K 390 (419)
T ss_pred c
Confidence 3
No 27
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=3.4e-09 Score=68.91 Aligned_cols=55 Identities=31% Similarity=0.485 Sum_probs=43.7
Q ss_pred cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccc
Q 045137 2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGG 57 (312)
Q Consensus 2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~ 57 (312)
|++++|.++.+| ..|..+++|++|++++| .+..++++++.++++|++|++++|.+
T Consensus 6 L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 6 LDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp EEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred EECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 677888888887 67788888888888888 77888777788888888888887753
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.76 E-value=4.1e-10 Score=97.55 Aligned_cols=139 Identities=15% Similarity=0.162 Sum_probs=61.3
Q ss_pred ceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC--cc
Q 045137 112 IRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST--FL 189 (312)
Q Consensus 112 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l 189 (312)
+.++++..|...++......-.....|+.|..++|.+..+..+..+.. +.++|+.|.+..|+++++.. .+
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~--------~~~~L~~l~l~~c~~fsd~~ft~l 341 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ--------HCHNLQVLELSGCQQFSDRGFTML 341 (483)
T ss_pred hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc--------CCCceEEEeccccchhhhhhhhhh
Confidence 334444444444444433333344455555555555444333333322 45566666666665554432 22
Q ss_pred CC-CCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccccccc-----cCCcCCCCccEEEecCC
Q 045137 190 AF-APNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIF-----WKPLPFTHLKEMGVRAC 263 (312)
Q Consensus 190 ~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-----~~~~~~~~L~~L~i~~c 263 (312)
+. .+.|+.+++.+|....+. .+..-...++.|+.+.++.|...++-. ........|+.+.+.+|
T Consensus 342 ~rn~~~Le~l~~e~~~~~~d~----------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~ 411 (483)
T KOG4341|consen 342 GRNCPHLERLDLEECGLITDG----------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNC 411 (483)
T ss_pred hcCChhhhhhcccccceehhh----------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCC
Confidence 22 455555555555443332 111122344555555555444433331 11223444555555555
Q ss_pred CCCCC
Q 045137 264 DQLRK 268 (312)
Q Consensus 264 ~~L~~ 268 (312)
|.+.+
T Consensus 412 p~i~d 416 (483)
T KOG4341|consen 412 PLITD 416 (483)
T ss_pred CCchH
Confidence 54443
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.74 E-value=4.8e-10 Score=96.47 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=40.0
Q ss_pred CCCccccHHhhCCC-CCcEEecCCCCCccccCchhhhccccccEEEEeccccccc
Q 045137 7 TTIRELPEELKLLV-NLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF 60 (312)
Q Consensus 7 ~~i~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~ 60 (312)
..++++|. +|+ .-..++|..| .|+.||+++|+.+++|+.|++++|.+..+
T Consensus 56 ~GL~eVP~---~LP~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I 106 (498)
T KOG4237|consen 56 KGLTEVPA---NLPPETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFI 106 (498)
T ss_pred CCcccCcc---cCCCcceEEEeccC-CcccCChhhccchhhhceecccccchhhc
Confidence 34555553 333 4566789999 99999999999999999999999998764
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.72 E-value=8.3e-09 Score=81.53 Aligned_cols=75 Identities=23% Similarity=0.348 Sum_probs=15.2
Q ss_pred cCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhh-ccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137 4 ISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLIS-KFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG 82 (312)
Q Consensus 4 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (312)
|+.+.|...| .+.+..+++.|+|++| .|..+.. ++ .+.+|+.|++++|.+. .+.++..
T Consensus 4 lt~~~i~~~~-~~~n~~~~~~L~L~~n-~I~~Ie~--L~~~l~~L~~L~Ls~N~I~-----------------~l~~l~~ 62 (175)
T PF14580_consen 4 LTANMIEQIA-QYNNPVKLRELNLRGN-QISTIEN--LGATLDKLEVLDLSNNQIT-----------------KLEGLPG 62 (175)
T ss_dssp ----------------------------------S----TT-TT--EEE-TTS--S-------------------TT---
T ss_pred cccccccccc-cccccccccccccccc-ccccccc--hhhhhcCCCEEECCCCCCc-----------------cccCccC
Confidence 4445555554 3455567888888888 7777754 55 5778888888888773 3556677
Q ss_pred CCCceEEEEEecChhhH
Q 045137 83 LKYLEVLELTLGSYHAL 99 (312)
Q Consensus 83 L~~L~~l~l~~~~~~~~ 99 (312)
+.+|+.|+++.+....+
T Consensus 63 L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 63 LPRLKTLDLSNNRISSI 79 (175)
T ss_dssp -TT--EEE--SS---S-
T ss_pred hhhhhhcccCCCCCCcc
Confidence 77777777776665444
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.72 E-value=2.3e-09 Score=84.70 Aligned_cols=125 Identities=19% Similarity=0.136 Sum_probs=42.9
Q ss_pred CcccCCCCCccccHHhh-CCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 1 LLDISHTTIRELPEELK-LLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
+|+|++|.|+.+. .++ .+.+|+.|++++| .+..++. +..+++|++|++++|.+..+ ...
T Consensus 23 ~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N~I~~i----------------~~~ 82 (175)
T PF14580_consen 23 ELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNNRISSI----------------SEG 82 (175)
T ss_dssp --------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-----------------CHH
T ss_pred ccccccccccccc-chhhhhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCCCCCcc----------------ccc
Confidence 4789999999884 676 6899999999999 8999875 89999999999999988531 122
Q ss_pred c-cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCcccc-chhhhcCccccceEEeccC
Q 045137 80 L-LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSII-DATAFTDLNHLNELWIDNG 146 (312)
Q Consensus 80 l-~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~ 146 (312)
+ ..+++|+.|+++.+....+.++..+..+. +|+.|++.+.+-..... -...+..+|+|+.|+-...
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~-~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLP-KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-T-T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCC-CcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 3 35778888888766554433333322211 56666666543221111 1134555666666655443
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.8e-10 Score=94.62 Aligned_cols=183 Identities=16% Similarity=0.088 Sum_probs=127.4
Q ss_pred ccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChh--hHHHHhhcccccccceEEEEeecCC
Q 045137 45 SRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGD 122 (312)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~ 122 (312)
..||++|++...++. ......+..+.+|+.+++...... ....+.+-. +|+.|+++.|.+
T Consensus 185 sRlq~lDLS~s~it~--------------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~----~L~~lnlsm~sG 246 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITV--------------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNS----NLVRLNLSMCSG 246 (419)
T ss_pred hhhHHhhcchhheeH--------------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccc----cceeeccccccc
Confidence 469999999887752 234445566667776666544332 233455555 899999999988
Q ss_pred CccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCccc---CC-ccCCCCCCceE
Q 045137 123 KKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKD---ST-FLAFAPNLKSL 198 (312)
Q Consensus 123 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---l~-~l~~l~~L~~L 198 (312)
.+.......+.++..|.+|++++|......--.... + --++|+.|++++|.+.-. +. ....+|+|..|
T Consensus 247 ~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~-------h-ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 247 FTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA-------H-ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred cchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh-------h-hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 887777678888999999999998544332111111 1 458999999999844322 22 23458999999
Q ss_pred EEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccccccc-cCCcCCCCccEEEecCCC
Q 045137 199 SLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIF-WKPLPFTHLKEMGVRACD 264 (312)
Q Consensus 199 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~i~~c~ 264 (312)
++++|-.+.+... .....|+.|++|.++.|..+-.-. ......|.|..|++.+|-
T Consensus 319 DLSD~v~l~~~~~-----------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 319 DLSDSVMLKNDCF-----------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccccccCchHH-----------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 9999877665311 134578999999999997654322 346789999999998874
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.68 E-value=2.9e-09 Score=95.74 Aligned_cols=162 Identities=22% Similarity=0.231 Sum_probs=105.3
Q ss_pred ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137 3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG 82 (312)
Q Consensus 3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (312)
.|+.|.+..+|..+++|..|++|||+.| .+..+|.+ +..|+ |+.|.+++|++. ..+..++.
T Consensus 104 iLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~-lC~lp-Lkvli~sNNkl~----------------~lp~~ig~ 164 (722)
T KOG0532|consen 104 ILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDG-LCDLP-LKVLIVSNNKLT----------------SLPEEIGL 164 (722)
T ss_pred HHHhccceecchhhhhhhHHHHhhhccc-hhhcCChh-hhcCc-ceeEEEecCccc----------------cCCccccc
Confidence 3455556666666666666666666666 56666665 55555 666666666655 33445556
Q ss_pred CCCceEEEEEecChhhHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137 83 LKYLEVLELTLGSYHALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR 161 (312)
Q Consensus 83 L~~L~~l~l~~~~~~~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 161 (312)
+.+|..++.+.+....++ .+..+. .++.|.+.. .....++..+..+ .|..|+++ |+.+..+++.+.
T Consensus 165 ~~tl~~ld~s~nei~slpsql~~l~----slr~l~vrR---n~l~~lp~El~~L-pLi~lDfS-cNkis~iPv~fr---- 231 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQSLPSQLGYLT----SLRDLNVRR---NHLEDLPEELCSL-PLIRLDFS-CNKISYLPVDFR---- 231 (722)
T ss_pred chhHHHhhhhhhhhhhchHHhhhHH----HHHHHHHhh---hhhhhCCHHHhCC-ceeeeecc-cCceeecchhhh----
Confidence 667777777777665544 455555 455554443 2334444555554 47889997 668888888877
Q ss_pred ccCCCCcccccceEeecCCCCcccCC----ccCCCCCCceEEEeec
Q 045137 162 KRREPFVFHSLHLVTIYSCHKLKDST----FLAFAPNLKSLSLFKC 203 (312)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~l~~l~----~l~~l~~L~~L~l~~~ 203 (312)
.+..|++|.|.+| -++..| ..|...-.|+|++..|
T Consensus 232 ------~m~~Lq~l~LenN-PLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 232 ------KMRHLQVLQLENN-PLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ------hhhhheeeeeccC-CCCCChHHHHhccceeeeeeecchhc
Confidence 7899999999888 455544 4566777888888887
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.5e-08 Score=88.49 Aligned_cols=175 Identities=15% Similarity=0.065 Sum_probs=115.1
Q ss_pred ccCCCCCcccc--HHhhCCCCCcEEecCCCCCccccC--chhhhccccccEEEEecccccccccCCCCccccCCccchhh
Q 045137 3 DISHTTIRELP--EELKLLVNLKCLNLRWTGALIRIP--RGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQ 78 (312)
Q Consensus 3 ~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp--~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (312)
.|..+.|...+ +....+++++.|||++| -+...- .++...+++|+.|+++.|.+... ..-.
T Consensus 127 sLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~--------------~~s~ 191 (505)
T KOG3207|consen 127 SLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNF--------------ISSN 191 (505)
T ss_pred eecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCC--------------cccc
Confidence 45666777776 46778999999999999 665432 24568899999999999987531 1111
Q ss_pred hccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137 79 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE 158 (312)
Q Consensus 79 ~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 158 (312)
.-..+.+|+.|.++.++.. ..+........+++..|++........... .-.-+..|++|++++++.+..-......
T Consensus 192 ~~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred chhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecc--hhhhhhHHhhccccCCcccccccccccc
Confidence 1225677888888866553 333333333333788888887643332222 2334567899999986443322112222
Q ss_pred cccccCCCCcccccceEeecCCCCcccCC--cc------CCCCCCceEEEeeccc
Q 045137 159 IVRKRREPFVFHSLHLVTIYSCHKLKDST--FL------AFAPNLKSLSLFKCRA 205 (312)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l------~~l~~L~~L~l~~~~~ 205 (312)
.+++|..|.++.| .+.++. .. ..+|+|++|.+..++.
T Consensus 269 ---------~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 269 ---------TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ---------cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcc
Confidence 7899999999998 777753 33 3489999999998875
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.50 E-value=6.9e-08 Score=87.45 Aligned_cols=169 Identities=22% Similarity=0.245 Sum_probs=90.2
Q ss_pred cccCCCCCccccHHhhCCC-CCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIRELPEELKLLV-NLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
|++.++.++++|...+.+. +|+.|++++| .+..+|.. ++.+++|+.|++++|.+..++ ...
T Consensus 121 L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~----------------~~~ 182 (394)
T COG4886 121 LDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFNDLSDLP----------------KLL 182 (394)
T ss_pred EecCCcccccCccccccchhhccccccccc-chhhhhhh-hhccccccccccCCchhhhhh----------------hhh
Confidence 4555666666666666664 6666666666 66666533 666666666666666654322 111
Q ss_pred cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137 81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV 160 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 160 (312)
..+.+|+.++++.+....++...... ..|+.+.+.+.. .......+..+.++..+.+.+. .+... .....
T Consensus 183 ~~~~~L~~L~ls~N~i~~l~~~~~~~---~~L~~l~~~~N~---~~~~~~~~~~~~~l~~l~l~~n-~~~~~-~~~~~-- 252 (394)
T COG4886 183 SNLSNLNNLDLSGNKISDLPPEIELL---SALEELDLSNNS---IIELLSSLSNLKNLSGLELSNN-KLEDL-PESIG-- 252 (394)
T ss_pred hhhhhhhheeccCCccccCchhhhhh---hhhhhhhhcCCc---ceecchhhhhcccccccccCCc-eeeec-cchhc--
Confidence 14455556666655554444332111 035555555432 1122234444555555554332 22221 12221
Q ss_pred cccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeecccc
Q 045137 161 RKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAM 206 (312)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~ 206 (312)
.+++++.|++++| .+.+++.++.+.+++.|+++++...
T Consensus 253 -------~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 253 -------NLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred -------cccccceeccccc-cccccccccccCccCEEeccCcccc
Confidence 5666777777777 6666666777777777777766543
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.49 E-value=8.7e-09 Score=89.46 Aligned_cols=145 Identities=14% Similarity=0.199 Sum_probs=108.7
Q ss_pred cceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccC--C-
Q 045137 111 CIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDS--T- 187 (312)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~- 187 (312)
.++.+..+++...++..+.......++|+.|-+.+|..+.+.+.....- +++.|+.+++.+|....+- .
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r--------n~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR--------NCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc--------CChhhhhhcccccceehhhhHhh
Confidence 6788888888776666664555567899999999998888777665542 7899999999999665552 3
Q ss_pred ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccccccccC-CcCCCCccEEEecCCCCC
Q 045137 188 FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWK-PLPFTHLKEMGVRACDQL 266 (312)
Q Consensus 188 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L 266 (312)
.-.++|.|+.|.++.|..+++. +.. .......+...|+.+++.+|+.+++-..+ ...++.||.+++.+|...
T Consensus 367 ls~~C~~lr~lslshce~itD~-gi~------~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDE-GIR------HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hccCCchhccCChhhhhhhhhh-hhh------hhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 3445899999999999887775 211 11124456778999999999988887655 456889999999999877
Q ss_pred CCCC
Q 045137 267 RKLP 270 (312)
Q Consensus 267 ~~l~ 270 (312)
..=+
T Consensus 440 tk~~ 443 (483)
T KOG4341|consen 440 TKEA 443 (483)
T ss_pred hhhh
Confidence 6533
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.6e-07 Score=59.95 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=51.1
Q ss_pred CCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecC
Q 045137 20 VNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS 95 (312)
Q Consensus 20 ~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~ 95 (312)
++|++|++++| .+..+|++++.++++|++|++++|.+.. .....+..+++|+.++++.+.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~---------------i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTS---------------IPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESE---------------EETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCc---------------cCHHHHcCCCCCCEEeCcCCc
Confidence 57999999999 9999999889999999999999999865 334567888889988886543
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.35 E-value=6.2e-07 Score=81.21 Aligned_cols=188 Identities=26% Similarity=0.244 Sum_probs=130.2
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccc-cccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFS-RLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
++++.+.+..-+..+..+..++.|++.++ .+.++++. ...+. +|+.|++++|.+.. .+..+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~-~~~~~~nL~~L~l~~N~i~~----------------l~~~~ 159 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPL-IGLLKSNLKELDLSDNKIES----------------LPSPL 159 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCc-ccccCccc-cccchhhcccccccccchhh----------------hhhhh
Confidence 34555555444466777889999999999 89999885 67774 99999999998753 22567
Q ss_pred cCCCCceEEEEEecChhhHHHHh-hcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc
Q 045137 81 LGLKYLEVLELTLGSYHALQILL-SSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI 159 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~~l~-~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 159 (312)
..+++|+.|++..+....++... ..+ .++.|++++.. ...++..+..+..|++|.+.+....+.+. ...
T Consensus 160 ~~l~~L~~L~l~~N~l~~l~~~~~~~~----~L~~L~ls~N~---i~~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~- 229 (394)
T COG4886 160 RNLPNLKNLDLSFNDLSDLPKLLSNLS----NLNNLDLSGNK---ISDLPPEIELLSALEELDLSNNSIIELLS--SLS- 229 (394)
T ss_pred hccccccccccCCchhhhhhhhhhhhh----hhhheeccCCc---cccCchhhhhhhhhhhhhhcCCcceecch--hhh-
Confidence 88889999999988887777655 556 78888888652 22222233455568899998753222221 111
Q ss_pred ccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccc
Q 045137 160 VRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSY 238 (312)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 238 (312)
.+.++..+.+.++ .+..++ .++.++++++|+++++.. .++. ..+.+.+++.+++++
T Consensus 230 --------~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n~i-~~i~-------------~~~~~~~l~~L~~s~ 286 (394)
T COG4886 230 --------NLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQI-SSIS-------------SLGSLTNLRELDLSG 286 (394)
T ss_pred --------hcccccccccCCc-eeeeccchhccccccceeccccccc-cccc-------------cccccCccCEEeccC
Confidence 6777888887776 555544 778889999999988754 3331 245677888888877
Q ss_pred cc
Q 045137 239 LP 240 (312)
Q Consensus 239 ~~ 240 (312)
..
T Consensus 287 n~ 288 (394)
T COG4886 287 NS 288 (394)
T ss_pred cc
Confidence 43
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.28 E-value=2.5e-08 Score=89.91 Aligned_cols=165 Identities=21% Similarity=0.175 Sum_probs=125.4
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
.||+.|...++|.++..+..|..+.|+.| .++.+|.. +.++..|.+|+++.|.+.-+|. .+.
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~----------------~lC 141 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEA-ICNLEALTFLDLSSNQLSHLPD----------------GLC 141 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhc-cceecchh-hhhhhHHHHhhhccchhhcCCh----------------hhh
Confidence 57899999999999999999999999999 89999986 9999999999999998875443 222
Q ss_pred CCCCceEEEEEecChhhHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137 82 GLKYLEVLELTLGSYHALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV 160 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 160 (312)
.|. |+.+-++.+....++ ++.... .+..|+.+.+.. ...++.++.+..|+.|.+... .+..++.+.
T Consensus 142 ~lp-Lkvli~sNNkl~~lp~~ig~~~----tl~~ld~s~nei---~slpsql~~l~slr~l~vrRn-~l~~lp~El---- 208 (722)
T KOG0532|consen 142 DLP-LKVLIVSNNKLTSLPEEIGLLP----TLAHLDVSKNEI---QSLPSQLGYLTSLRDLNVRRN-HLEDLPEEL---- 208 (722)
T ss_pred cCc-ceeEEEecCccccCCcccccch----hHHHhhhhhhhh---hhchHHhhhHHHHHHHHHhhh-hhhhCCHHH----
Confidence 222 677777777665554 333333 667777776633 334467888888998888865 555555433
Q ss_pred cccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccc
Q 045137 161 RKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRA 205 (312)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~ 205 (312)
..-.|..||++.| ++..+| .+-+|..|++|-|++|+.
T Consensus 209 -------~~LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 209 -------CSLPLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred -------hCCceeeeecccC-ceeecchhhhhhhhheeeeeccCCC
Confidence 2345788898887 899999 788999999999998874
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=1.7e-06 Score=51.73 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=26.0
Q ss_pred CCCcEEecCCCCCccccCchhhhccccccEEEEeccccccc
Q 045137 20 VNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF 60 (312)
Q Consensus 20 ~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~ 60 (312)
++|++|++++| .+.++|+. +++|++|++|++++|.+..+
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~-l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE-LSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH-GTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCC-CCcccCch-HhCCCCCCEEEecCCCCCCC
Confidence 46777777777 67777765 77777777777777776543
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=3e-06 Score=50.68 Aligned_cols=37 Identities=41% Similarity=0.529 Sum_probs=32.2
Q ss_pred CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCc
Q 045137 1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPR 38 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 38 (312)
+|++++|+|+++|..+++|++|++|++++| .+.+++.
T Consensus 5 ~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 5 ELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp EEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred EEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 478999999999988999999999999999 7777654
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=7.3e-07 Score=81.22 Aligned_cols=53 Identities=26% Similarity=0.439 Sum_probs=25.0
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGG 57 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~ 57 (312)
|++.+|.|..+...+..+++|++|++++| .|+.+.. +..++.|+.|++.+|.+
T Consensus 100 l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 100 LDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKELNLSGNLI 152 (414)
T ss_pred eeccccchhhcccchhhhhcchheecccc-ccccccc--hhhccchhhheeccCcc
Confidence 34444444444322444555555555555 4444443 44444455555555444
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.01 E-value=1.2e-06 Score=73.56 Aligned_cols=102 Identities=20% Similarity=0.136 Sum_probs=65.5
Q ss_pred hCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecCh
Q 045137 17 KLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 96 (312)
Q Consensus 17 ~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~ 96 (312)
.-.+.|+.+||++| .|+.+..+ +.-+|.++.|+++.|.+. .+.++..|.+|..|+++.+..
T Consensus 281 dTWq~LtelDLS~N-~I~~iDES-vKL~Pkir~L~lS~N~i~-----------------~v~nLa~L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 281 DTWQELTELDLSGN-LITQIDES-VKLAPKLRRLILSQNRIR-----------------TVQNLAELPQLQLLDLSGNLL 341 (490)
T ss_pred chHhhhhhcccccc-chhhhhhh-hhhccceeEEecccccee-----------------eehhhhhcccceEeecccchh
Confidence 33477888888888 78877776 677788888888888773 355677788888888887766
Q ss_pred hhHHHH-hhcccccccceEEEEeecCCCccccchhhhcCccccceEEecc
Q 045137 97 HALQIL-LSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDN 145 (312)
Q Consensus 97 ~~~~~l-~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 145 (312)
.....+ .++. +++.|.+.... .... +.++.+-+|..|++++
T Consensus 342 s~~~Gwh~KLG----NIKtL~La~N~---iE~L-SGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 342 AECVGWHLKLG----NIKTLKLAQNK---IETL-SGLRKLYSLVNLDLSS 383 (490)
T ss_pred HhhhhhHhhhc----CEeeeehhhhh---Hhhh-hhhHhhhhheeccccc
Confidence 555544 2333 66676665421 1111 3344444555555554
No 44
>PLN03150 hypothetical protein; Provisional
Probab=97.96 E-value=1.3e-05 Score=76.69 Aligned_cols=77 Identities=23% Similarity=0.319 Sum_probs=55.8
Q ss_pred cccCCCCCc-cccHHhhCCCCCcEEecCCCCCcc-ccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 2 LDISHTTIR-ELPEELKLLVNLKCLNLRWTGALI-RIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 2 L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~-~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
|+|++|.+. .+|..++.|++|++|+|++| .+. .+|.. ++.+++|+.|++++|.+.. ..+..
T Consensus 423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~LdLs~N~lsg---------------~iP~~ 485 (623)
T PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLDLSYNSFNG---------------SIPES 485 (623)
T ss_pred EECCCCCccccCCHHHhCCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEECCCCCCCC---------------CCchH
Confidence 567777775 67788888888888888888 444 56765 7888888888888887743 44556
Q ss_pred ccCCCCceEEEEEecC
Q 045137 80 LLGLKYLEVLELTLGS 95 (312)
Q Consensus 80 l~~L~~L~~l~l~~~~ 95 (312)
+..+.+|+.|+++.+.
T Consensus 486 l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 486 LGQLTSLRILNLNGNS 501 (623)
T ss_pred HhcCCCCCEEECcCCc
Confidence 6677777777776553
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.94 E-value=8.4e-07 Score=80.85 Aligned_cols=119 Identities=21% Similarity=0.192 Sum_probs=86.0
Q ss_pred ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137 3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG 82 (312)
Q Consensus 3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (312)
+++.|.|.++-..+..+++|..|++.+| .+..+... +..|++|++|++++|.+ ..+..+..
T Consensus 78 ~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~-l~~~~~L~~L~ls~N~I-----------------~~i~~l~~ 138 (414)
T KOG0531|consen 78 NLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENL-LSSLVNLQVLDLSFNKI-----------------TKLEGLST 138 (414)
T ss_pred ccchhhhhhhhcccccccceeeeecccc-chhhcccc-hhhhhcchheecccccc-----------------ccccchhh
Confidence 4556666664455788999999999999 88888764 78899999999999988 44566777
Q ss_pred CCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137 83 LKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG 146 (312)
Q Consensus 83 L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 146 (312)
+..|+.|++..+.+..+..+..+. .++.++++++........ . +..+..++.+.+.++
T Consensus 139 l~~L~~L~l~~N~i~~~~~~~~l~----~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDISGLESLK----SLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGN 196 (414)
T ss_pred ccchhhheeccCcchhccCCccch----hhhcccCCcchhhhhhhh-h-hhhccchHHHhccCC
Confidence 777888888888887777666666 677777776532221110 1 456667777777754
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.92 E-value=2.2e-06 Score=73.24 Aligned_cols=202 Identities=15% Similarity=0.052 Sum_probs=117.6
Q ss_pred hCCCCCcEEecCCCCCcc-ccCc---hhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEE
Q 045137 17 KLLVNLKCLNLRWTGALI-RIPR---GLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELT 92 (312)
Q Consensus 17 ~~L~~L~~L~L~~~~~~~-~lp~---~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~ 92 (312)
-..++|++||||+|. ++ .-++ ..+..+..|++|++.+|.+....-+. +.-+............-.+|+++.+.
T Consensus 89 ~~~~~L~~ldLSDNA-~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~--l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNA-FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGR--LGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred hcCCceeEeeccccc-cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHH--HHHHHHHHHHHhccCCCcceEEEEee
Confidence 345699999999994 33 2222 24677899999999999885321100 00000000122334445678888887
Q ss_pred ecChhh-----H-HHHhhcccccccceEEEEeecCCC--ccccchhhhcCccccceEEeccCcCcceeeeeccccccccC
Q 045137 93 LGSYHA-----L-QILLSSNKLKSCIRSLYLYLTGDK--KSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRR 164 (312)
Q Consensus 93 ~~~~~~-----~-~~l~~l~~l~~~L~~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 164 (312)
.|+... . ..+...+ .|+.+.+...... ........+..+++|+.|++.++. ++.-+..... ...
T Consensus 166 rNrlen~ga~~~A~~~~~~~----~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~La--kaL- 237 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHP----TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALA--KAL- 237 (382)
T ss_pred ccccccccHHHHHHHHHhcc----ccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHH--HHh-
Confidence 664421 1 1233333 6777777754221 122333678888999999999753 2211111110 001
Q ss_pred CCCcccccceEeecCCCCcccCC-------ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecc
Q 045137 165 EPFVFHSLHLVTIYSCHKLKDST-------FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLS 237 (312)
Q Consensus 165 ~~~~~~~L~~L~l~~~~~l~~l~-------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 237 (312)
+ .+++|+.|++++| .+.+-. .-...|.|+.|.+.+|..-.+... .+..+...-|.|+.|.+.
T Consensus 238 -~-s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~--------~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 238 -S-SWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL--------ALAACMAEKPDLEKLNLN 306 (382)
T ss_pred -c-ccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH--------HHHHHHhcchhhHHhcCC
Confidence 1 6789999999999 776521 223479999999998876544321 111133447899999998
Q ss_pred ccc
Q 045137 238 YLP 240 (312)
Q Consensus 238 ~~~ 240 (312)
++.
T Consensus 307 gN~ 309 (382)
T KOG1909|consen 307 GNR 309 (382)
T ss_pred ccc
Confidence 863
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=1.3e-06 Score=81.27 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=76.7
Q ss_pred ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137 3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG 82 (312)
Q Consensus 3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (312)
+.++|.+..+.+++.-++.|+.|||++| .+..+.. +..|++|++||++.|.+..+|. -....
T Consensus 170 ~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~~--Lr~l~~LkhLDlsyN~L~~vp~---------------l~~~g 231 (1096)
T KOG1859|consen 170 SFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVDN--LRRLPKLKHLDLSYNCLRHVPQ---------------LSMVG 231 (1096)
T ss_pred hcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhHH--HHhcccccccccccchhccccc---------------cchhh
Confidence 4567777777777777888888888888 5655542 7778888888888777654321 11111
Q ss_pred CCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137 83 LKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG 146 (312)
Q Consensus 83 L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 146 (312)
. .|..|.++.|....+.++.+++ +|+.|++++.-....... .-+..+..|+.|++.++
T Consensus 232 c-~L~~L~lrnN~l~tL~gie~Lk----sL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 232 C-KLQLLNLRNNALTTLRGIENLK----SLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred h-hheeeeecccHHHhhhhHHhhh----hhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCC
Confidence 2 2677777777777777777777 777777776422222222 44455556666676663
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=1.5e-05 Score=76.40 Aligned_cols=107 Identities=16% Similarity=0.041 Sum_probs=54.8
Q ss_pred CCCcEEecCCCCCccccCchhh-hccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhh
Q 045137 20 VNLKCLNLRWTGALIRIPRGLI-SKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA 98 (312)
Q Consensus 20 ~~L~~L~L~~~~~~~~lp~~~i-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~ 98 (312)
.+|++|++++...+..-.+..+ ..+|+|+.|.+.+-.+. .........++++|..|||+......
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~--------------~~dF~~lc~sFpNL~sLDIS~TnI~n 187 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD--------------NDDFSQLCASFPNLRSLDISGTNISN 187 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec--------------chhHHHHhhccCccceeecCCCCccC
Confidence 4666666665533322211112 33566666666654442 11233444556666666666555555
Q ss_pred HHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEecc
Q 045137 99 LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDN 145 (312)
Q Consensus 99 ~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 145 (312)
+.++.+++ +|+.|.+.+.+-.....+ ..+..+++|+.|+++.
T Consensus 188 l~GIS~Lk----nLq~L~mrnLe~e~~~~l-~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 188 LSGISRLK----NLQVLSMRNLEFESYQDL-IDLFNLKKLRVLDISR 229 (699)
T ss_pred cHHHhccc----cHHHHhccCCCCCchhhH-HHHhcccCCCeeeccc
Confidence 55555555 566665555543333333 4555566666666654
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.71 E-value=3.6e-05 Score=61.14 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=25.3
Q ss_pred ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccc
Q 045137 3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF 58 (312)
Q Consensus 3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~ 58 (312)
||++|.+..++ .+-.+++|.+|.+++| .|..|.+..-..+++|+.|.+.+|++.
T Consensus 48 DLtdNdl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 48 DLTDNDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccccchhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchh
Confidence 44444444432 2334555555555555 444444442233444555555555444
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=1e-05 Score=67.95 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=24.9
Q ss_pred cccccceEeecCCCCccc---CCccCCCCCCceEEEeecccccee
Q 045137 168 VFHSLHLVTIYSCHKLKD---STFLAFAPNLKSLSLFKCRAMEEI 209 (312)
Q Consensus 168 ~~~~L~~L~l~~~~~l~~---l~~l~~l~~L~~L~l~~~~~~~~~ 209 (312)
.+|.+..|.++.+ ++.+ +..+..+|+|.-|++.+++.++..
T Consensus 222 ~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 222 PFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 4555556666655 4444 235666777777777776655443
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.60 E-value=9.3e-06 Score=69.44 Aligned_cols=233 Identities=17% Similarity=0.060 Sum_probs=144.6
Q ss_pred CcccCCCCCc-----cccHHhhCCCCCcEEecCCCCCccc----cCc------hhhhccccccEEEEecccccccccCCC
Q 045137 1 LLDISHTTIR-----ELPEELKLLVNLKCLNLRWTGALIR----IPR------GLISKFSRLRVLRMLGTGGFIFYEAPE 65 (312)
Q Consensus 1 ~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~----lp~------~~i~~l~~L~~L~l~~~~~~~~~~~~~ 65 (312)
+++||||.+. .+.+.+.+.++|+..++++- ..+. +|+ .++..+++|++|++++|=+..-.
T Consensus 34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g---- 108 (382)
T KOG1909|consen 34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG---- 108 (382)
T ss_pred EEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc----
Confidence 4789999984 36677888999999999876 4332 343 23556789999999998774211
Q ss_pred CccccCCccchhhhccCCCCceEEEEEecChhhH---------HHH--hhcccccccceEEEEeecCCC--ccccchhhh
Q 045137 66 DSVLFGGGEVLIQELLGLKYLEVLELTLGSYHAL---------QIL--LSSNKLKSCIRSLYLYLTGDK--KSIIDATAF 132 (312)
Q Consensus 66 ~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~---------~~l--~~l~~l~~~L~~L~l~~~~~~--~~~~~~~~l 132 (312)
....-.-+.+...|+.|.++.++.... .++ .+.......||.+.....+-. ....+...+
T Consensus 109 -------~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 109 -------IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred -------hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 112223456677788888876654211 111 112222236777766654322 222333567
Q ss_pred cCccccceEEeccCcCcceeee----eccccccccCCCCcccccceEeecCCCCccc-----CC-ccCCCCCCceEEEee
Q 045137 133 TDLNHLNELWIDNGIELEELKI----DYTEIVRKRREPFVFHSLHLVTIYSCHKLKD-----ST-FLAFAPNLKSLSLFK 202 (312)
Q Consensus 133 ~~l~~L~~L~l~~~~~l~~l~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~-~l~~l~~L~~L~l~~ 202 (312)
+..+.|+.+.+..+ .+..-+. ..+. .+++|+.|+|.+| ..+. +. .+..+|+|+.|++.+
T Consensus 182 ~~~~~leevr~~qN-~I~~eG~~al~eal~---------~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQN-GIRPEGVTALAEALE---------HCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred HhccccceEEEecc-cccCchhHHHHHHHH---------hCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccc
Confidence 77789999988754 3332222 1222 8999999999998 4433 11 566689999999999
Q ss_pred ccccceecccCccccCCCCCCCCccCCCcCeeeccccccccc-----cccCCcCCCCccEEEecCCC
Q 045137 203 CRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKS-----IFWKPLPFTHLKEMGVRACD 264 (312)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~i~~c~ 264 (312)
|..-..- ... ...+-....|.|+.|.+.++. ++. +.......|.|+.|.+++|.
T Consensus 251 cll~~~G--a~a-----~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 251 CLLENEG--AIA-----FVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccc--HHH-----HHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 9643321 000 001123458999999998863 322 11224458999999999874
No 52
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.60 E-value=5.3e-06 Score=76.95 Aligned_cols=123 Identities=17% Similarity=0.004 Sum_probs=73.2
Q ss_pred CCCCCcEEecCCCCCccccC-chhhhccccccEEEEecc-cccccccCCCCccccCCccchhhhccCCCCceEEEEEecC
Q 045137 18 LLVNLKCLNLRWTGALIRIP-RGLISKFSRLRVLRMLGT-GGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS 95 (312)
Q Consensus 18 ~L~~L~~L~L~~~~~~~~lp-~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~ 95 (312)
..++|+.|.+.++..+.... ..+...+++|+.|++.++ ...... ..........+++|+.+++....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----------~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS-----------PLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc-----------hhHhhhhhhhcCCcCccchhhhh
Confidence 46888888888887666532 123677888999988873 221100 10112233445667777766444
Q ss_pred hhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcce
Q 045137 96 YHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEE 151 (312)
Q Consensus 96 ~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 151 (312)
......+..+...+.+|+.|.+..|...++..+......+++|++|+++.|..+.+
T Consensus 255 ~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 255 LVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred ccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 22222333333323478888877776666666656667777888888888766533
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.49 E-value=0.00032 Score=62.64 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=24.9
Q ss_pred hCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccc
Q 045137 17 KLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGG 57 (312)
Q Consensus 17 ~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~ 57 (312)
..+.++++|++++| .+..+|. + ..+|+.|.+.+|..
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~--L--P~sLtsL~Lsnc~n 84 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV--L--PNELTEITIENCNN 84 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC--C--CCCCcEEEccCCCC
Confidence 44678888888888 7777773 2 23588888877544
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.49 E-value=8.8e-06 Score=75.96 Aligned_cols=99 Identities=22% Similarity=0.277 Sum_probs=74.5
Q ss_pred CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
.||||+|++.+.- .+..+++|++|||++| .++.+|.--...+. |+.|.+++|-. ..+.++
T Consensus 191 ~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l-----------------~tL~gi 250 (1096)
T KOG1859|consen 191 SLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNAL-----------------TTLRGI 250 (1096)
T ss_pred hhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHH-----------------HhhhhH
Confidence 3799999999884 8999999999999999 89988863245555 99999999976 557788
Q ss_pred cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeec
Q 045137 81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLT 120 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~ 120 (312)
.+|++|+.|+++.|-...+.++.-+..+. .|+.|.+.+.
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeGN 289 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEGN 289 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcCC
Confidence 88999999999877655444444333222 4566665543
No 55
>PLN03150 hypothetical protein; Provisional
Probab=97.47 E-value=0.00018 Score=68.98 Aligned_cols=57 Identities=25% Similarity=0.466 Sum_probs=50.0
Q ss_pred CcccCCCCCc-cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccc
Q 045137 1 LLDISHTTIR-ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF 58 (312)
Q Consensus 1 ~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~ 58 (312)
+|+|++|.+. .+|..++.+++|++|+|++|.....+|.. +++|++|++|++++|.+.
T Consensus 446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGNSLS 503 (623)
T ss_pred EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECcCCccc
Confidence 3789999997 89999999999999999999444467776 999999999999999875
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=7.7e-05 Score=71.67 Aligned_cols=124 Identities=23% Similarity=0.188 Sum_probs=63.4
Q ss_pred CcccCCCCCc--cccHHhh-CCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchh
Q 045137 1 LLDISHTTIR--ELPEELK-LLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLI 77 (312)
Q Consensus 1 ~L~Ls~~~i~--~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (312)
+||++|...- .=|..++ -||.|+.|.+++-.....=-.....+++||..||++++++ ..+
T Consensus 126 ~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-----------------~nl 188 (699)
T KOG3665|consen 126 HLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-----------------SNL 188 (699)
T ss_pred hcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-----------------cCc
Confidence 3566665432 1234444 4677777777765221111112245667777777777766 334
Q ss_pred hhccCCCCceEEEEEe---cChhhHHHHhhcccccccceEEEEeecCCCccccch----hhhcCccccceEEecc
Q 045137 78 QELLGLKYLEVLELTL---GSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDA----TAFTDLNHLNELWIDN 145 (312)
Q Consensus 78 ~~l~~L~~L~~l~l~~---~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~----~~l~~l~~L~~L~l~~ 145 (312)
.+++.|++|++|.+.. .....+..+.+++ +|+.|+++.........+. +.-..+|+|+.|+.++
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~----~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK----KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHhccccHHHHhccCCCCCchhhHHHHhccc----CCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 5566666666655542 2223444556666 6777777754322222111 1222356666666664
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.41 E-value=0.00092 Score=59.79 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=26.5
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGT 55 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~ 55 (312)
|+++++.+..+|. --.+|+.|++++|..+..+|.. + .++|++|++.+|
T Consensus 57 L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~C 104 (426)
T PRK15386 57 LYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHC 104 (426)
T ss_pred EEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCc
Confidence 5566666666651 1224666666666555555543 2 245666666665
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.00018 Score=60.62 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=11.9
Q ss_pred CCccCCCcCeeeccccccccc
Q 045137 224 HISPFENLKSLDLSYLPELKS 244 (312)
Q Consensus 224 ~~~~~~~L~~L~l~~~~~l~~ 244 (312)
....|+.|..|.+.+.|-...
T Consensus 244 ~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 244 ALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred HHcCCchhheeeccCCccccc
Confidence 345566666666666554333
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.18 E-value=0.00087 Score=53.43 Aligned_cols=125 Identities=18% Similarity=0.077 Sum_probs=74.7
Q ss_pred cccCCCCCccccHHhh-CCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIRELPEELK-LLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
++|++.++..+.. .+ -+.....+||++| .+..++. +..+++|.+|.+.+|.+..+ ...--
T Consensus 24 ~~LR~lkip~ien-lg~~~d~~d~iDLtdN-dl~~l~~--lp~l~rL~tLll~nNrIt~I---------------~p~L~ 84 (233)
T KOG1644|consen 24 LDLRGLKIPVIEN-LGATLDQFDAIDLTDN-DLRKLDN--LPHLPRLHTLLLNNNRITRI---------------DPDLD 84 (233)
T ss_pred cccccccccchhh-ccccccccceeccccc-chhhccc--CCCccccceEEecCCcceee---------------ccchh
Confidence 4555555543321 22 3467788999999 7887776 88899999999999988652 22223
Q ss_pred cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccc-cchhhhcCccccceEEeccC
Q 045137 81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSI-IDATAFTDLNHLNELWIDNG 146 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~ 146 (312)
..+++|..|.+..+....+.++..+..+. .|+.|.+-+....... +-.-.+..+|+|+.|++..-
T Consensus 85 ~~~p~l~~L~LtnNsi~~l~dl~pLa~~p-~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 85 TFLPNLKTLILTNNSIQELGDLDPLASCP-KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhccccceEEecCcchhhhhhcchhccCC-ccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 34566777777766655544444333222 5666666554322111 11134566777777777653
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.15 E-value=9e-05 Score=68.72 Aligned_cols=118 Identities=21% Similarity=0.070 Sum_probs=71.3
Q ss_pred HHhhCCCCCcEEecCC-CCCccccC---chhhhccccccEEEEeccc-ccccccCCCCccccCCccchhhhccC-CCCce
Q 045137 14 EELKLLVNLKCLNLRW-TGALIRIP---RGLISKFSRLRVLRMLGTG-GFIFYEAPEDSVLFGGGEVLIQELLG-LKYLE 87 (312)
Q Consensus 14 ~~i~~L~~L~~L~L~~-~~~~~~lp---~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~ 87 (312)
......++|+.|++++ +..+...+ ......+++|+.|++..+. +.. ..+..+.. +++|+
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd---------------~~l~~l~~~c~~L~ 272 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD---------------IGLSALASRCPNLE 272 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc---------------hhHHHHHhhCCCcc
Confidence 4556789999999987 32322222 2235667899999999887 332 33444333 56777
Q ss_pred EEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137 88 VLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG 146 (312)
Q Consensus 88 ~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 146 (312)
.+.+..........+......+..|++|++++|....+..+......+++|+.|.+..+
T Consensus 273 ~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 273 TLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred eEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 77754333223334444433344799999999877655544444555666666655443
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.00025 Score=59.29 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=60.0
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
|+.=|+.++++ +-..+++-|++|.|+-| .|+.+.+ +..|++|+.|++..|.+. ....+..|.
T Consensus 24 LNcwg~~L~DI-sic~kMp~lEVLsLSvN-kIssL~p--l~rCtrLkElYLRkN~I~--------------sldEL~YLk 85 (388)
T KOG2123|consen 24 LNCWGCGLDDI-SICEKMPLLEVLSLSVN-KISSLAP--LQRCTRLKELYLRKNCIE--------------SLDELEYLK 85 (388)
T ss_pred hcccCCCccHH-HHHHhcccceeEEeecc-ccccchh--HHHHHHHHHHHHHhcccc--------------cHHHHHHHh
Confidence 45556677777 45678999999999999 8888877 899999999999998886 336677788
Q ss_pred CCCCceEEEEEecC
Q 045137 82 GLKYLEVLELTLGS 95 (312)
Q Consensus 82 ~L~~L~~l~l~~~~ 95 (312)
+|++|+.|.+.-+.
T Consensus 86 nlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 86 NLPSLRTLWLDENP 99 (388)
T ss_pred cCchhhhHhhccCC
Confidence 88888888776543
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.00013 Score=60.84 Aligned_cols=85 Identities=24% Similarity=0.306 Sum_probs=52.8
Q ss_pred cccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCC
Q 045137 44 FSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDK 123 (312)
Q Consensus 44 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~ 123 (312)
+.+.+.|++.+|.+ ..+..+..+..|++|.++.+.+.++..+.... .|+.|++... .+
T Consensus 18 l~~vkKLNcwg~~L-----------------~DIsic~kMp~lEVLsLSvNkIssL~pl~rCt----rLkElYLRkN-~I 75 (388)
T KOG2123|consen 18 LENVKKLNCWGCGL-----------------DDISICEKMPLLEVLSLSVNKISSLAPLQRCT----RLKELYLRKN-CI 75 (388)
T ss_pred HHHhhhhcccCCCc-----------------cHHHHHHhcccceeEEeeccccccchhHHHHH----HHHHHHHHhc-cc
Confidence 45566666666655 44556667777777777777776666666655 5666655543 22
Q ss_pred ccccchhhhcCccccceEEeccCcCcc
Q 045137 124 KSIIDATAFTDLNHLNELWIDNGIELE 150 (312)
Q Consensus 124 ~~~~~~~~l~~l~~L~~L~l~~~~~l~ 150 (312)
.+......+.++++|+.|.+..+....
T Consensus 76 ~sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 76 ESLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred ccHHHHHHHhcCchhhhHhhccCCccc
Confidence 333333667777777777777654433
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00015 Score=57.59 Aligned_cols=87 Identities=18% Similarity=0.324 Sum_probs=48.9
Q ss_pred cceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCccc--CCccCC-CCCCceEEEeeccccceecccCc
Q 045137 138 LNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKD--STFLAF-APNLKSLSLFKCRAMEEIISVGK 214 (312)
Q Consensus 138 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~l~~-l~~L~~L~l~~~~~~~~~~~~~~ 214 (312)
++.++-+++ .+...+.+.+. .++.++.|.+.+|..+.+ +..+++ .|+|+.|+|++|+.+++- +
T Consensus 103 IeaVDAsds-~I~~eGle~L~---------~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-G--- 168 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEGLEHLR---------DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-G--- 168 (221)
T ss_pred EEEEecCCc-hHHHHHHHHHh---------ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-H---
Confidence 444444443 34444444444 566666667777766655 223333 567777777777666653 1
Q ss_pred cccCCCCCCCCccCCCcCeeecccccccccc
Q 045137 215 IAENPEMMGHISPFENLKSLDLSYLPELKSI 245 (312)
Q Consensus 215 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 245 (312)
-.++..|++|+.|.+.+++.....
T Consensus 169 -------L~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 169 -------LACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred -------HHHHHHhhhhHHHHhcCchhhhch
Confidence 124556677777777666654443
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.31 E-value=0.00089 Score=50.14 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=57.6
Q ss_pred CcccCCCCCccccHH---hhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchh
Q 045137 1 LLDISHTTIRELPEE---LKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLI 77 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~---i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (312)
+++||.+.+.-++.. +....+|+..+|++| .++.+|+.+..+.+.++.|++.+|.+.++|
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvP---------------- 93 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVP---------------- 93 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhch----------------
Confidence 367888877655544 456677777899999 888888886677788999999998887544
Q ss_pred hhccCCCCceEEEEEecChh
Q 045137 78 QELLGLKYLEVLELTLGSYH 97 (312)
Q Consensus 78 ~~l~~L~~L~~l~l~~~~~~ 97 (312)
.++..++-|+.++++.+...
T Consensus 94 eE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 94 EELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred HHHhhhHHhhhcccccCccc
Confidence 33555666677777766553
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.14 E-value=0.00094 Score=50.02 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=49.1
Q ss_pred cccCCCCCccccHHhh-CCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccccc
Q 045137 2 LDISHTTIRELPEELK-LLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF 60 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~ 60 (312)
.+|++|.+.++|+.|. +++-++.||+++| .+.++|.+ +..|+.|+.|+++.|.+...
T Consensus 58 i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N~l~~~ 115 (177)
T KOG4579|consen 58 ISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFNPLNAE 115 (177)
T ss_pred EecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccCccccc
Confidence 4789999999996665 6679999999999 89999998 99999999999999988643
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.96 E-value=0.0025 Score=31.68 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=13.5
Q ss_pred CCcEEecCCCCCccccCchhhhc
Q 045137 21 NLKCLNLRWTGALIRIPRGLISK 43 (312)
Q Consensus 21 ~L~~L~L~~~~~~~~lp~~~i~~ 43 (312)
+|++||+++| .++.+|++ +++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~-~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS-FSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTT-TTT
T ss_pred CccEEECCCC-cCEeCChh-hcC
Confidence 4667777777 66666665 544
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.72 E-value=0.0028 Score=52.52 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=20.2
Q ss_pred hCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccc
Q 045137 17 KLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTG 56 (312)
Q Consensus 17 ~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~ 56 (312)
..+.+|++|.+.++ .+..+-. +..|++|+.|.++.|.
T Consensus 40 d~~~~le~ls~~n~-gltt~~~--~P~Lp~LkkL~lsdn~ 76 (260)
T KOG2739|consen 40 DEFVELELLSVINV-GLTTLTN--FPKLPKLKKLELSDNY 76 (260)
T ss_pred ccccchhhhhhhcc-ceeeccc--CCCcchhhhhcccCCc
Confidence 34555555555555 3333322 4556677777777663
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.59 E-value=0.0065 Score=50.42 Aligned_cols=64 Identities=23% Similarity=0.106 Sum_probs=44.1
Q ss_pred hhCCCCCcEEecCCC--CCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEe
Q 045137 16 LKLLVNLKCLNLRWT--GALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTL 93 (312)
Q Consensus 16 i~~L~~L~~L~L~~~--~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~ 93 (312)
+=.|++|++|.++.| +....++.- ..++++|++|++++|++.. ...+..+..+++|..|++..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~--------------lstl~pl~~l~nL~~Ldl~n 125 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKD--------------LSTLRPLKELENLKSLDLFN 125 (260)
T ss_pred CCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccc--------------ccccchhhhhcchhhhhccc
Confidence 446889999999999 434445553 5667999999999998852 24445555556666666553
Q ss_pred c
Q 045137 94 G 94 (312)
Q Consensus 94 ~ 94 (312)
+
T Consensus 126 ~ 126 (260)
T KOG2739|consen 126 C 126 (260)
T ss_pred C
Confidence 3
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.22 E-value=0.0035 Score=31.16 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=15.7
Q ss_pred CcccCCCCCccccHHhhCC
Q 045137 1 LLDISHTTIRELPEELKLL 19 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~~L 19 (312)
+|||++|.++.+|.+|++|
T Consensus 4 ~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 4 YLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp EEEETSSEESEEGTTTTT-
T ss_pred EEECCCCcCEeCChhhcCC
Confidence 5899999999999877764
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.06 E-value=0.02 Score=29.58 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=18.2
Q ss_pred CCCCcEEecCCCCCccccCchhhh
Q 045137 19 LVNLKCLNLRWTGALIRIPRGLIS 42 (312)
Q Consensus 19 L~~L~~L~L~~~~~~~~lp~~~i~ 42 (312)
|++|++|+|++| .+..+|++++.
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHcc
Confidence 567888999988 88888887553
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.06 E-value=0.02 Score=29.58 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=18.2
Q ss_pred CCCCcEEecCCCCCccccCchhhh
Q 045137 19 LVNLKCLNLRWTGALIRIPRGLIS 42 (312)
Q Consensus 19 L~~L~~L~L~~~~~~~~lp~~~i~ 42 (312)
|++|++|+|++| .+..+|++++.
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHcc
Confidence 567888999988 88888887553
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=0.0063 Score=48.65 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=19.1
Q ss_pred cccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecC
Q 045137 136 NHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYS 179 (312)
Q Consensus 136 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 179 (312)
++|+.|+|++|..+++-++..+. .+++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~---------~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLL---------KLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHH---------HhhhhHHHHhcC
Confidence 45566666666555555544443 455555555544
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.70 E-value=0.021 Score=26.31 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=7.5
Q ss_pred CCcEEecCCCCCccccC
Q 045137 21 NLKCLNLRWTGALIRIP 37 (312)
Q Consensus 21 ~L~~L~L~~~~~~~~lp 37 (312)
+|+.|++++| .+..+|
T Consensus 2 ~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCC-CCCCCc
Confidence 5666666666 455544
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.09 E-value=0.035 Score=46.66 Aligned_cols=55 Identities=24% Similarity=0.220 Sum_probs=27.4
Q ss_pred cccCCCCCc-----cccHHhhCCCCCcEEecCCCCCccc----cCc------hhhhccccccEEEEecccc
Q 045137 2 LDISHTTIR-----ELPEELKLLVNLKCLNLRWTGALIR----IPR------GLISKFSRLRVLRMLGTGG 57 (312)
Q Consensus 2 L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~----lp~------~~i~~l~~L~~L~l~~~~~ 57 (312)
++||||.|. .+..-|.+-++|+..+++.- +.+. ++. .++.+|++|+..+++.|-+
T Consensus 35 vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred EeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 467777663 23344455556666665544 2221 111 1244556666666665544
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.87 E-value=0.22 Score=42.07 Aligned_cols=180 Identities=14% Similarity=0.017 Sum_probs=96.2
Q ss_pred HhhCCCCCcEEecCCCCCccccCc---hhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEE
Q 045137 15 ELKLLVNLKCLNLRWTGALIRIPR---GLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLEL 91 (312)
Q Consensus 15 ~i~~L~~L~~L~L~~~~~~~~lp~---~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l 91 (312)
.+-++++|+..+|+.|..-...|+ ..|+.-.+|.||.+.+|.+..+.-+ ++.-+............-+.|++..+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~--rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGG--RIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchh--HHHHHHHHHHHHhhhccCCCceEEEe
Confidence 356789999999999954334444 2457778999999999987532100 00000000011122333456777777
Q ss_pred EecChhhHH--HHh-hcccccccceEEEEeecCCCccccc----hhhhcCccccceEEeccCcCcceeeeeccccccccC
Q 045137 92 TLGSYHALQ--ILL-SSNKLKSCIRSLYLYLTGDKKSIID----ATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRR 164 (312)
Q Consensus 92 ~~~~~~~~~--~l~-~l~~l~~~L~~L~l~~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 164 (312)
..++....+ .+. .+... .+|+.+.+.... +....+ ...+..+.+|+.|++.++. .+-.+..... ...+
T Consensus 165 grNRlengs~~~~a~~l~sh-~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La--~al~ 239 (388)
T COG5238 165 GRNRLENGSKELSAALLESH-ENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLA--DALC 239 (388)
T ss_pred ccchhccCcHHHHHHHHHhh-cCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHH--HHhc
Confidence 655443211 111 11111 267777777642 222211 1345556788899998752 2221111111 0010
Q ss_pred CCCcccccceEeecCCCCcccC--C----ccC--CCCCCceEEEeeccc
Q 045137 165 EPFVFHSLHLVTIYSCHKLKDS--T----FLA--FAPNLKSLSLFKCRA 205 (312)
Q Consensus 165 ~~~~~~~L~~L~l~~~~~l~~l--~----~l~--~l~~L~~L~l~~~~~ 205 (312)
.++.|+.|.+.+| .++.- . .+. ..|+|..|...++..
T Consensus 240 ---~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 240 ---EWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred ---ccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 5677999999999 55441 1 111 268888888776643
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.13 E-value=0.28 Score=36.40 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=20.7
Q ss_pred HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecc
Q 045137 14 EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGT 55 (312)
Q Consensus 14 ~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~ 55 (312)
..|....+|+.+.+.. .+..++..++..+++|+.+.+.++
T Consensus 6 ~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~ 45 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN 45 (129)
T ss_dssp TTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST
T ss_pred HHHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc
Confidence 3456666777777763 456676666777777777777653
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.18 E-value=2.7 Score=30.91 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=12.5
Q ss_pred cccccceEeecCCCCcccCC--ccCCCCCCceEEE
Q 045137 168 VFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSL 200 (312)
Q Consensus 168 ~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l 200 (312)
.+.+|+.+.+.+. +..++ .+.++++|+.+.+
T Consensus 33 ~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 33 NCTSLKSINFPNN--LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp T-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEE
T ss_pred ccccccccccccc--ccccceeeeecccccccccc
Confidence 4445555555442 33333 3444555555555
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.86 E-value=0.33 Score=24.98 Aligned_cols=17 Identities=18% Similarity=0.610 Sum_probs=12.6
Q ss_pred CCCccEEEecCCCCCCC
Q 045137 252 FTHLKEMGVRACDQLRK 268 (312)
Q Consensus 252 ~~~L~~L~i~~c~~L~~ 268 (312)
+++|+.|++++|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46778888888877765
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.60 E-value=0.066 Score=44.03 Aligned_cols=55 Identities=20% Similarity=0.125 Sum_probs=39.0
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF 58 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~ 58 (312)
||+|.|.|..+|+.++.+..++.++++.| .....|.+ +++.+++++++..++.+.
T Consensus 70 l~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 70 LDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-ccccCCcchhhhccCcch
Confidence 56666777777777777777777777777 66777776 777777777777766543
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.93 E-value=2 Score=22.18 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=10.1
Q ss_pred CCCCcEEecCCCCCccc
Q 045137 19 LVNLKCLNLRWTGALIR 35 (312)
Q Consensus 19 L~~L~~L~L~~~~~~~~ 35 (312)
+++|+.|++++| .|+.
T Consensus 1 L~~L~~L~L~~N-kI~~ 16 (26)
T smart00365 1 LTNLEELDLSQN-KIKK 16 (26)
T ss_pred CCccCEEECCCC-ccce
Confidence 456777777777 4443
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.56 E-value=2.3 Score=21.98 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=12.6
Q ss_pred CCCcEEecCCCCCccccCc
Q 045137 20 VNLKCLNLRWTGALIRIPR 38 (312)
Q Consensus 20 ~~L~~L~L~~~~~~~~lp~ 38 (312)
.+|+.|++++| .++.+|.
T Consensus 2 ~~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNN-QLTSLPE 19 (26)
T ss_pred cccceeecCCC-ccccCcc
Confidence 35777777777 6777765
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=73.86 E-value=1.7 Score=21.59 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=5.0
Q ss_pred ccccEEEEecccc
Q 045137 45 SRLRVLRMLGTGG 57 (312)
Q Consensus 45 ~~L~~L~l~~~~~ 57 (312)
++|++|++++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3444444444443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=70.65 E-value=0.12 Score=42.61 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=27.5
Q ss_pred Ccccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccc
Q 045137 9 IRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF 58 (312)
Q Consensus 9 i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~ 58 (312)
++++| .+|..+..-+.||++.| .+..+... ++.+..|..|+++.+.+.
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~-r~vn~~~n-~s~~t~~~rl~~sknq~~ 78 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSN-RLVNLGKN-FSILTRLVRLDLSKNQIK 78 (326)
T ss_pred hcccchhhhhccceeeeehhhhh-HHHhhccc-hHHHHHHHHHhccHhhHh
Confidence 34455 55566666666666666 44445444 555666666666655543
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.73 E-value=4.7 Score=21.04 Aligned_cols=11 Identities=27% Similarity=0.295 Sum_probs=7.0
Q ss_pred CCCcEEecCCC
Q 045137 20 VNLKCLNLRWT 30 (312)
Q Consensus 20 ~~L~~L~L~~~ 30 (312)
++|++|+|++|
T Consensus 2 ~~L~~LdL~~N 12 (28)
T smart00368 2 PSLRELDLSNN 12 (28)
T ss_pred CccCEEECCCC
Confidence 45666666666
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.23 E-value=11 Score=35.19 Aligned_cols=83 Identities=19% Similarity=0.087 Sum_probs=51.1
Q ss_pred cccccceEeecCCCCcccCCc---cC-CCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccccc
Q 045137 168 VFHSLHLVTIYSCHKLKDSTF---LA-FAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELK 243 (312)
Q Consensus 168 ~~~~L~~L~l~~~~~l~~l~~---l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 243 (312)
.++.+..+.+++| ++.++.. +. ..|+|+.|+|+++...-.. +.+........|++|-+.|.|-.+
T Consensus 216 n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~----------~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISS----------ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcc----------hhhhhhhcCCCHHHeeecCCcccc
Confidence 6788888888888 6666542 22 3699999999887322211 111233445667888888876554
Q ss_pred ccccC-------CcCCCCccEEEec
Q 045137 244 SIFWK-------PLPFTHLKEMGVR 261 (312)
Q Consensus 244 ~~~~~-------~~~~~~L~~L~i~ 261 (312)
+.... ...||+|..|+=.
T Consensus 285 tf~~~s~yv~~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 285 TFSDRSEYVSAIRELFPKLLRLDGV 309 (585)
T ss_pred chhhhHHHHHHHHHhcchheeecCc
Confidence 44332 1248888777633
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=39.97 E-value=21 Score=40.14 Aligned_cols=29 Identities=28% Similarity=0.265 Sum_probs=25.8
Q ss_pred ccCCCCCcccc-HHhhCCCCCcEEecCCCC
Q 045137 3 DISHTTIRELP-EELKLLVNLKCLNLRWTG 31 (312)
Q Consensus 3 ~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~ 31 (312)
||++|+|..|| ..|..|.+|+.|+|++|-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNP 30 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNP 30 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCc
Confidence 68999999998 778899999999999884
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=35.96 E-value=27 Score=39.41 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=28.6
Q ss_pred ecCCCCCccccCchhhhccccccEEEEeccccc
Q 045137 26 NLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF 58 (312)
Q Consensus 26 ~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~ 58 (312)
||++| .|..||.+.|..+++|+.|+|.+|.+.
T Consensus 1 DLSnN-~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNN-KISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCC-cCCccChHHhccCCCceEEEeeCCccc
Confidence 68899 999999999999999999999987653
No 88
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=21.69 E-value=45 Score=17.23 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=10.6
Q ss_pred hhhccccccEEEEec
Q 045137 40 LISKFSRLRVLRMLG 54 (312)
Q Consensus 40 ~i~~l~~L~~L~l~~ 54 (312)
++..+++|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 467788888887643
Done!