Query 045137
Match_columns 312
No_of_seqs 131 out of 1731
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 17:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 1.3E-21 4.5E-26 171.2 16.0 140 132-296 179-319 (328)
2 2id5_A Lingo-1, leucine rich r 99.8 4.9E-20 1.7E-24 169.4 16.0 256 1-288 60-330 (477)
3 3zyi_A Leucine-rich repeat-con 99.8 3.9E-20 1.3E-24 168.9 13.5 241 4-292 61-304 (452)
4 3zyj_A Leucine-rich repeat-con 99.8 4.9E-20 1.7E-24 167.7 13.8 241 4-292 50-293 (440)
5 4fcg_A Uncharacterized protein 99.8 2.5E-19 8.6E-24 156.7 12.7 214 1-262 85-310 (328)
6 3v47_A TOLL-like receptor 5B a 99.8 6.4E-19 2.2E-23 160.8 15.5 273 1-292 34-409 (455)
7 1xku_A Decorin; proteoglycan, 99.8 1E-18 3.5E-23 152.9 16.2 222 2-274 57-283 (330)
8 3zyi_A Leucine-rich repeat-con 99.8 3.7E-19 1.3E-23 162.4 13.1 217 1-264 79-301 (452)
9 3o6n_A APL1; leucine-rich repe 99.8 6E-19 2.1E-23 157.9 13.9 258 1-292 73-353 (390)
10 3zyj_A Leucine-rich repeat-con 99.8 6E-19 2E-23 160.5 13.7 217 1-264 68-290 (440)
11 2z80_A TOLL-like receptor 2, v 99.8 1.1E-19 3.6E-24 160.7 8.0 247 2-290 57-313 (353)
12 2id5_A Lingo-1, leucine rich r 99.8 1.9E-18 6.4E-23 158.8 14.6 250 1-285 36-303 (477)
13 4fmz_A Internalin; leucine ric 99.8 1.4E-18 4.6E-23 153.1 12.7 36 168-204 219-254 (347)
14 4fmz_A Internalin; leucine ric 99.8 1.7E-18 5.9E-23 152.4 12.9 241 1-284 92-339 (347)
15 2z66_A Variable lymphocyte rec 99.8 8.4E-19 2.9E-23 151.8 9.8 241 2-288 12-258 (306)
16 2ft3_A Biglycan; proteoglycan, 99.8 2.8E-18 9.6E-23 150.3 12.6 108 168-290 191-306 (332)
17 3oja_B Anopheles plasmodium-re 99.8 1.7E-18 5.9E-23 163.4 11.8 62 225-291 297-358 (597)
18 2z66_A Variable lymphocyte rec 99.8 1.9E-18 6.4E-23 149.6 10.3 216 1-264 32-259 (306)
19 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-18 4.1E-23 151.5 9.1 222 2-272 55-287 (313)
20 1ozn_A Reticulon 4 receptor; N 99.7 6.1E-18 2.1E-22 144.9 12.0 215 2-264 16-236 (285)
21 1o6v_A Internalin A; bacterial 99.7 3.8E-17 1.3E-21 149.7 17.7 111 168-286 219-339 (466)
22 3t6q_A CD180 antigen; protein- 99.7 5.2E-18 1.8E-22 160.3 12.2 185 2-205 259-461 (606)
23 3oja_B Anopheles plasmodium-re 99.7 6.5E-18 2.2E-22 159.4 12.5 62 1-63 79-141 (597)
24 1o6v_A Internalin A; bacterial 99.7 3.1E-17 1.1E-21 150.2 16.3 252 2-286 73-361 (466)
25 3t6q_A CD180 antigen; protein- 99.7 1.6E-17 5.5E-22 156.9 13.9 176 14-205 246-437 (606)
26 1ogq_A PGIP-2, polygalacturona 99.7 1.2E-18 4.2E-23 151.4 5.5 224 1-271 80-309 (313)
27 1xku_A Decorin; proteoglycan, 99.7 2E-17 6.9E-22 144.7 13.2 238 2-291 36-276 (330)
28 2xwt_C Thyrotropin receptor; s 99.7 1.1E-17 3.6E-22 139.7 10.6 211 5-266 19-239 (239)
29 3o6n_A APL1; leucine-rich repe 99.7 1.5E-17 5.1E-22 148.9 11.8 245 2-286 50-326 (390)
30 3o53_A Protein LRIM1, AGAP0063 99.7 1.3E-17 4.6E-22 145.0 11.1 109 131-263 139-247 (317)
31 3v47_A TOLL-like receptor 5B a 99.7 2.7E-17 9.2E-22 150.0 13.0 239 1-264 58-406 (455)
32 4eco_A Uncharacterized protein 99.7 2E-17 6.7E-22 157.2 12.5 241 6-286 192-496 (636)
33 3vq2_A TLR4, TOLL-like recepto 99.7 4.1E-17 1.4E-21 154.2 13.9 94 1-95 60-164 (606)
34 2z7x_B TOLL-like receptor 1, v 99.7 3.4E-16 1.2E-20 145.2 19.8 113 1-121 25-149 (520)
35 1h6u_A Internalin H; cell adhe 99.7 1.7E-17 5.8E-22 143.8 10.2 207 5-270 27-233 (308)
36 3vq2_A TLR4, TOLL-like recepto 99.7 7.1E-18 2.4E-22 159.4 8.3 239 2-292 290-559 (606)
37 3j0a_A TOLL-like receptor 5; m 99.7 4.9E-17 1.7E-21 159.3 14.1 117 1-121 28-159 (844)
38 3oja_A Leucine-rich immune mol 99.7 3.2E-17 1.1E-21 150.9 11.4 209 2-264 39-248 (487)
39 1ozn_A Reticulon 4 receptor; N 99.7 2.1E-17 7.1E-22 141.6 9.4 195 1-240 36-236 (285)
40 3bz5_A Internalin-J, INLJ; leu 99.7 9.8E-17 3.4E-21 146.4 14.2 157 1-204 46-202 (457)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4.3E-16 1.5E-20 146.0 18.8 146 133-292 350-511 (562)
42 4eco_A Uncharacterized protein 99.7 5.8E-17 2E-21 154.0 12.7 141 132-293 453-602 (636)
43 2ft3_A Biglycan; proteoglycan, 99.7 4.6E-17 1.6E-21 142.5 10.7 238 2-292 38-278 (332)
44 2z7x_B TOLL-like receptor 1, v 99.7 3.2E-16 1.1E-20 145.4 17.0 144 133-290 321-480 (520)
45 4ecn_A Leucine-rich repeat pro 99.7 1.7E-17 6E-22 161.4 8.6 253 1-286 452-761 (876)
46 2z81_A CD282 antigen, TOLL-lik 99.7 6.2E-17 2.1E-21 151.1 11.9 115 2-121 31-159 (549)
47 2xwt_C Thyrotropin receptor; s 99.7 1.7E-16 5.6E-21 132.4 13.0 198 1-241 35-238 (239)
48 2z80_A TOLL-like receptor 2, v 99.7 4.7E-17 1.6E-21 143.7 9.9 223 1-264 80-312 (353)
49 2z62_A TOLL-like receptor 4, v 99.7 5.1E-17 1.7E-21 138.5 9.7 209 5-262 15-233 (276)
50 2o6q_A Variable lymphocyte rec 99.7 8.9E-17 3E-21 136.6 10.9 77 2-96 21-97 (270)
51 3o53_A Protein LRIM1, AGAP0063 99.7 3.9E-17 1.3E-21 142.1 8.1 231 3-291 16-250 (317)
52 4ay9_X Follicle-stimulating ho 99.7 2E-16 6.9E-21 139.5 12.8 225 4-261 16-254 (350)
53 1h6u_A Internalin H; cell adhe 99.7 1.5E-16 5E-21 137.9 11.3 187 1-244 45-231 (308)
54 3rgz_A Protein brassinosteroid 99.7 1.5E-16 5.2E-21 154.3 12.4 252 2-273 399-724 (768)
55 4ecn_A Leucine-rich repeat pro 99.7 2.8E-16 9.6E-21 153.0 13.9 248 2-292 553-841 (876)
56 2z63_A TOLL-like receptor 4, v 99.7 1.7E-16 5.8E-21 148.7 11.6 248 11-292 273-532 (570)
57 3rgz_A Protein brassinosteroid 99.7 2.4E-16 8.2E-21 152.9 13.0 172 1-205 372-550 (768)
58 4g8a_A TOLL-like receptor 4; l 99.7 2.9E-16 9.9E-21 148.7 13.1 116 1-121 56-184 (635)
59 1ziw_A TOLL-like receptor 3; i 99.7 1.5E-16 5E-21 152.4 11.1 257 15-292 324-623 (680)
60 2o6q_A Variable lymphocyte rec 99.7 1.5E-16 5.2E-21 135.2 9.3 79 1-95 41-120 (270)
61 1ziw_A TOLL-like receptor 3; i 99.7 8.9E-16 3.1E-20 146.9 15.6 187 1-205 53-284 (680)
62 2ast_B S-phase kinase-associat 99.7 3.1E-17 1.1E-21 143.7 5.1 172 3-204 76-258 (336)
63 3bz5_A Internalin-J, INLJ; leu 99.7 2.3E-16 7.8E-21 144.0 10.5 171 1-205 68-245 (457)
64 2z63_A TOLL-like receptor 4, v 99.7 3.5E-16 1.2E-20 146.6 12.0 131 1-153 32-165 (570)
65 3j0a_A TOLL-like receptor 5; m 99.7 1.7E-15 5.7E-20 148.5 16.7 94 2-96 53-160 (844)
66 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 9.5E-15 3.2E-19 136.8 20.1 114 1-120 56-179 (562)
67 3oja_A Leucine-rich immune mol 99.6 3.5E-16 1.2E-20 144.0 9.6 225 9-291 19-250 (487)
68 2z81_A CD282 antigen, TOLL-lik 99.6 2.8E-16 9.7E-21 146.6 9.0 168 3-203 11-182 (549)
69 4ay9_X Follicle-stimulating ho 99.6 2.6E-15 8.8E-20 132.4 14.4 220 23-284 12-252 (350)
70 2ast_B S-phase kinase-associat 99.6 9.7E-17 3.3E-21 140.5 5.1 220 2-263 52-282 (336)
71 1wwl_A Monocyte differentiatio 99.6 2E-16 6.8E-21 137.3 6.9 241 2-291 48-309 (312)
72 3rfs_A Internalin B, repeat mo 99.6 3.9E-16 1.3E-20 132.8 8.4 215 3-274 25-243 (272)
73 1h6t_A Internalin B; cell adhe 99.6 9.7E-16 3.3E-20 131.7 10.4 182 3-240 30-211 (291)
74 2z62_A TOLL-like receptor 4, v 99.6 2E-15 6.9E-20 128.6 12.3 218 24-291 11-237 (276)
75 1wwl_A Monocyte differentiatio 99.6 5.1E-16 1.8E-20 134.7 8.5 216 2-263 68-306 (312)
76 1p9a_G Platelet glycoprotein I 99.6 1.3E-15 4.6E-20 130.7 10.7 54 2-58 15-68 (290)
77 3rfs_A Internalin B, repeat mo 99.6 4.2E-16 1.4E-20 132.6 7.2 155 79-263 58-215 (272)
78 1jl5_A Outer protein YOPM; leu 99.6 3.2E-16 1.1E-20 142.9 6.3 239 1-271 15-274 (454)
79 1m9s_A Internalin B; cell inva 99.6 2.1E-15 7.2E-20 141.8 10.8 165 1-207 47-211 (605)
80 1p9a_G Platelet glycoprotein I 99.6 2.4E-15 8.1E-20 129.1 10.2 200 15-264 5-206 (290)
81 3g06_A SSPH2 (leucine-rich rep 99.6 5.3E-15 1.8E-19 139.4 12.7 53 2-61 45-97 (622)
82 1h6t_A Internalin B; cell adhe 99.6 4.6E-15 1.6E-19 127.4 10.6 164 2-207 51-214 (291)
83 3m19_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 125.6 8.4 146 2-204 19-166 (251)
84 1m9s_A Internalin B; cell inva 99.5 1E-14 3.5E-19 137.1 9.7 182 3-240 27-208 (605)
85 3g06_A SSPH2 (leucine-rich rep 99.5 3.4E-14 1.2E-18 133.9 13.1 221 1-264 65-295 (622)
86 4g8a_A TOLL-like receptor 4; l 99.5 4.6E-14 1.6E-18 133.5 14.0 111 168-292 467-581 (635)
87 1xeu_A Internalin C; cellular 99.5 1.6E-14 5.6E-19 122.1 9.1 163 2-207 24-186 (263)
88 4glp_A Monocyte differentiatio 99.5 1.3E-14 4.3E-19 125.8 8.4 201 18-263 89-304 (310)
89 1jl5_A Outer protein YOPM; leu 99.5 5.2E-14 1.8E-18 128.3 12.4 129 2-146 116-247 (454)
90 4ezg_A Putative uncharacterize 99.5 3E-14 1E-18 115.2 9.3 149 17-203 41-191 (197)
91 3goz_A Leucine-rich repeat-con 99.5 2.2E-15 7.6E-20 133.4 2.4 58 1-59 2-65 (362)
92 4ezg_A Putative uncharacterize 99.5 4.2E-14 1.4E-18 114.3 9.5 145 1-184 48-194 (197)
93 2ca6_A RAN GTPase-activating p 99.5 4E-15 1.4E-19 132.9 3.7 226 2-264 37-314 (386)
94 4glp_A Monocyte differentiatio 99.5 4E-14 1.4E-18 122.6 7.2 197 1-240 95-305 (310)
95 3m19_A Variable lymphocyte rec 99.4 1.1E-13 3.8E-18 116.1 7.6 151 1-206 39-192 (251)
96 2o6s_A Variable lymphocyte rec 99.4 3.7E-13 1.3E-17 109.6 9.9 146 2-204 12-159 (208)
97 2v9t_B SLIT homolog 2 protein 99.4 5.4E-13 1.9E-17 109.7 9.8 147 2-205 16-164 (220)
98 1z7x_W Ribonuclease inhibitor; 99.4 7.4E-14 2.5E-18 127.3 3.1 195 2-204 8-238 (461)
99 3goz_A Leucine-rich repeat-con 99.4 2.2E-13 7.4E-18 120.6 5.9 237 1-264 26-295 (362)
100 3ogk_B Coronatine-insensitive 99.4 4E-13 1.4E-17 126.3 7.6 41 226-268 485-527 (592)
101 2ca6_A RAN GTPase-activating p 99.4 1.4E-13 4.8E-18 122.8 4.1 200 1-240 64-314 (386)
102 2o6s_A Variable lymphocyte rec 99.4 2.6E-13 8.9E-18 110.5 4.8 146 1-206 32-178 (208)
103 2xot_A Amphoterin-induced prot 99.4 2.6E-13 8.8E-18 120.1 4.8 172 2-205 23-201 (361)
104 1z7x_W Ribonuclease inhibitor; 99.4 3.8E-14 1.3E-18 129.3 -0.7 195 2-204 61-295 (461)
105 2v70_A SLIT-2, SLIT homolog 2 99.4 3E-12 1E-16 105.2 10.3 148 2-206 16-166 (220)
106 3ogk_B Coronatine-insensitive 99.3 1E-12 3.6E-17 123.5 7.0 211 13-264 263-499 (592)
107 1xeu_A Internalin C; cellular 99.3 1.6E-12 5.3E-17 109.9 7.3 144 1-187 45-188 (263)
108 3e6j_A Variable lymphocyte rec 99.3 1.8E-12 6.1E-17 107.2 7.1 146 2-205 24-171 (229)
109 3cvr_A Invasion plasmid antige 99.3 3.7E-12 1.3E-16 118.7 8.7 180 21-263 60-240 (571)
110 1dce_A Protein (RAB geranylger 99.3 7.5E-15 2.6E-19 137.2 -9.5 208 17-259 346-566 (567)
111 1dce_A Protein (RAB geranylger 99.2 2.1E-13 7.2E-18 127.4 -3.8 86 168-270 461-549 (567)
112 3cvr_A Invasion plasmid antige 99.2 1.4E-11 4.8E-16 114.8 7.4 172 1-240 63-241 (571)
113 2xot_A Amphoterin-induced prot 99.2 5.9E-12 2E-16 111.3 4.1 148 1-180 43-199 (361)
114 3e6j_A Variable lymphocyte rec 99.2 2.1E-11 7.1E-16 100.8 6.6 125 1-180 44-169 (229)
115 2ell_A Acidic leucine-rich nuc 99.2 6.4E-11 2.2E-15 92.8 8.2 131 17-205 21-159 (168)
116 2p1m_B Transport inhibitor res 99.2 6.9E-12 2.3E-16 117.9 2.3 209 12-265 281-518 (594)
117 2v9t_B SLIT homolog 2 protein 99.1 3.7E-11 1.3E-15 98.6 5.8 125 2-180 37-162 (220)
118 2v70_A SLIT-2, SLIT homolog 2 99.1 2.8E-11 9.4E-16 99.4 4.7 126 1-180 36-163 (220)
119 2p1m_B Transport inhibitor res 99.1 1.2E-11 3.9E-16 116.4 2.8 223 2-265 216-493 (594)
120 2ell_A Acidic leucine-rich nuc 99.1 3.5E-11 1.2E-15 94.3 3.7 131 1-187 28-163 (168)
121 2je0_A Acidic leucine-rich nuc 99.1 3.8E-11 1.3E-15 92.2 3.6 128 18-179 15-149 (149)
122 1ds9_A Outer arm dynein; leuci 99.1 2.1E-11 7.2E-16 98.4 1.9 90 8-120 36-125 (198)
123 3sb4_A Hypothetical leucine ri 99.0 1.5E-10 5.1E-15 100.9 5.8 49 11-61 83-140 (329)
124 2wfh_A SLIT homolog 2 protein 99.0 1.5E-10 5E-15 93.0 4.7 120 2-146 15-136 (193)
125 1w8a_A SLIT protein; signaling 99.0 1.5E-10 5E-15 92.9 4.7 124 2-181 13-137 (192)
126 2wfh_A SLIT homolog 2 protein 99.0 2.6E-10 8.7E-15 91.6 5.9 122 23-180 13-136 (193)
127 2je0_A Acidic leucine-rich nuc 99.0 1.8E-10 6.2E-15 88.3 4.7 121 2-144 22-148 (149)
128 2o6r_A Variable lymphocyte rec 98.9 1E-09 3.5E-14 86.7 6.2 123 2-180 12-134 (177)
129 1a9n_A U2A', U2A'; complex (nu 98.9 5.8E-10 2E-14 88.1 4.2 131 15-180 14-150 (176)
130 1a9n_A U2A', U2A'; complex (nu 98.9 6.8E-10 2.3E-14 87.6 3.7 120 2-147 24-151 (176)
131 4b8c_D Glucose-repressible alc 98.8 2.6E-10 8.9E-15 109.7 -0.3 116 6-146 210-326 (727)
132 2o6r_A Variable lymphocyte rec 98.8 1.9E-09 6.4E-14 85.1 4.2 79 1-95 32-111 (177)
133 3g39_A Variable lymphocyte rec 98.8 3.5E-09 1.2E-13 83.1 5.5 98 2-121 14-113 (170)
134 1w8a_A SLIT protein; signaling 98.8 1.5E-09 5.1E-14 87.0 3.2 79 1-95 33-113 (192)
135 3g39_A Variable lymphocyte rec 98.8 2.3E-09 7.9E-14 84.1 3.8 78 2-95 35-113 (170)
136 2r9u_A Variable lymphocyte rec 98.8 4.6E-09 1.6E-13 82.8 5.4 98 2-121 17-116 (174)
137 2r9u_A Variable lymphocyte rec 98.8 2.3E-09 7.8E-14 84.5 3.6 56 2-58 38-94 (174)
138 1ds9_A Outer arm dynein; leuci 98.8 2.9E-10 9.8E-15 91.6 -1.9 96 1-120 52-150 (198)
139 3sb4_A Hypothetical leucine ri 98.7 1.7E-07 5.7E-12 81.5 13.9 214 2-258 106-326 (329)
140 4fdw_A Leucine rich hypothetic 98.7 6.1E-07 2.1E-11 80.1 15.6 133 136-297 248-393 (401)
141 4b8c_D Glucose-repressible alc 98.6 7.3E-09 2.5E-13 99.6 2.4 97 2-120 229-326 (727)
142 3e4g_A ATP synthase subunit S, 98.6 2E-08 6.9E-13 78.4 4.1 37 171-207 115-153 (176)
143 4fdw_A Leucine rich hypothetic 98.6 6.9E-07 2.4E-11 79.8 13.2 222 8-285 123-352 (401)
144 2ifg_A High affinity nerve gro 98.5 6E-08 2E-12 84.9 4.5 98 2-120 13-113 (347)
145 3e4g_A ATP synthase subunit S, 98.4 5.1E-07 1.8E-11 70.5 7.3 99 36-151 53-154 (176)
146 3un9_A NLR family member X1; l 98.4 6E-08 2.1E-12 85.8 0.9 160 19-205 71-251 (372)
147 3un9_A NLR family member X1; l 98.4 3.6E-08 1.2E-12 87.2 -0.5 174 44-245 71-254 (372)
148 2ifg_A High affinity nerve gro 98.3 3.8E-07 1.3E-11 79.7 5.2 79 1-96 35-115 (347)
149 2ra8_A Uncharacterized protein 98.2 2.1E-06 7.3E-11 75.4 6.3 15 41-55 168-182 (362)
150 2ra8_A Uncharacterized protein 97.8 2.4E-05 8.4E-10 68.6 6.1 63 11-92 163-227 (362)
151 3rw6_A Nuclear RNA export fact 97.7 3E-05 1E-09 64.9 5.2 79 2-96 148-232 (267)
152 3rw6_A Nuclear RNA export fact 97.4 9.7E-05 3.3E-09 61.8 4.1 55 1-58 174-233 (267)
153 1io0_A Tropomodulin; LRR prote 97.3 0.00015 5.2E-09 57.2 4.0 119 12-146 28-161 (185)
154 4fs7_A Uncharacterized protein 97.3 0.003 1E-07 55.8 12.2 39 15-55 157-195 (394)
155 1io0_A Tropomodulin; LRR prote 97.2 0.00022 7.4E-09 56.3 3.2 123 40-184 31-164 (185)
156 3rfe_A Platelet glycoprotein I 97.1 0.00043 1.5E-08 51.2 4.2 54 2-58 13-68 (130)
157 4fs7_A Uncharacterized protein 97.1 0.0021 7E-08 56.9 9.0 45 9-55 59-104 (394)
158 4gt6_A Cell surface protein; l 97.0 0.011 3.9E-07 52.1 13.6 43 9-53 102-145 (394)
159 4gt6_A Cell surface protein; l 96.4 0.065 2.2E-06 47.2 13.4 47 9-55 75-124 (394)
160 4h09_A Hypothetical leucine ri 96.2 0.088 3E-06 45.9 13.4 34 18-53 44-77 (379)
161 3rfe_A Platelet glycoprotein I 93.6 0.034 1.2E-06 40.8 2.4 31 1-31 35-66 (130)
162 4h09_A Hypothetical leucine ri 93.0 0.41 1.4E-05 41.6 8.8 61 130-202 280-342 (379)
163 1pgv_A TMD-1, tropomodulin TMD 91.4 0.18 6.2E-06 39.7 4.0 118 16-145 37-166 (197)
164 1pgv_A TMD-1, tropomodulin TMD 87.2 0.32 1.1E-05 38.3 2.6 89 42-145 38-135 (197)
165 2lz0_A Uncharacterized protein 80.6 1.5 5.1E-05 30.2 3.4 49 5-55 4-53 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.3e-21 Score=171.25 Aligned_cols=140 Identities=19% Similarity=0.226 Sum_probs=97.3
Q ss_pred hcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceec
Q 045137 132 FTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEII 210 (312)
Q Consensus 132 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~ 210 (312)
+..+++|++|+++++ .+..++.. +. .+++|++|++++| .+..+| .++.+++|++|++++|.....+.
T Consensus 179 ~~~l~~L~~L~L~~n-~l~~lp~~-l~---------~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWT-GIRSLPAS-IA---------NLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYP 246 (328)
T ss_dssp EEESTTCCEEEEEEE-CCCCCCGG-GG---------GCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred hccCCCCCEEECcCC-CcCcchHh-hc---------CCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhH
Confidence 455778888888875 45544432 22 6788888888888 666665 67778888888888876655432
Q ss_pred ccCccccCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhh
Q 045137 211 SVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWW 290 (312)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~ 290 (312)
.....+++|++|++++|.....++.....+++|+.|++++|..+..+|...... ..++.+..+.+..
T Consensus 247 ------------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 247 ------------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQ 313 (328)
T ss_dssp ------------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEEECCGGGS
T ss_pred ------------HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc-cCceEEeCCHHHH
Confidence 144567888888888887777777667778888888888888888888655555 6677777776666
Q ss_pred hhcccc
Q 045137 291 NRLQWE 296 (312)
Q Consensus 291 ~~~~~~ 296 (312)
..+.+.
T Consensus 314 ~~l~~~ 319 (328)
T 4fcg_A 314 AQLDQH 319 (328)
T ss_dssp CC----
T ss_pred HHHhhh
Confidence 555443
No 2
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=4.9e-20 Score=169.36 Aligned_cols=256 Identities=19% Similarity=0.152 Sum_probs=166.4
Q ss_pred CcccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccccccc-CCCCcc------ccC-
Q 045137 1 LLDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYE-APEDSV------LFG- 71 (312)
Q Consensus 1 ~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~~------~~~- 71 (312)
+|+|++|.+..+ |..|+++++|++|+|++| .+..+|.+++.++++|++|++++|.+..++. .+.... ...
T Consensus 60 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 60 ELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred EEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence 378899999877 688999999999999999 8888888778999999999999998865432 111110 000
Q ss_pred -CccchhhhccCCCCceEEEEEecChhhH--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcC
Q 045137 72 -GGEVLIQELLGLKYLEVLELTLGSYHAL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIE 148 (312)
Q Consensus 72 -~~~~~~~~l~~L~~L~~l~l~~~~~~~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 148 (312)
........+..+.+|+.|+++.+....+ ..+..++ +|+.|++.++.... .. ...+..+++|++|+++++..
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~----~L~~L~l~~n~i~~-~~-~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH----GLIVLRLRHLNINA-IR-DYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCT----TCCEEEEESCCCCE-EC-TTCSCSCTTCCEEEEECCTT
T ss_pred ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccC----CCcEEeCCCCcCcE-eC-hhhcccCcccceeeCCCCcc
Confidence 0112223455566666666665544322 2344455 66777776653222 11 13566667777777776655
Q ss_pred cceeeeeccccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCc
Q 045137 149 LEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHIS 226 (312)
Q Consensus 149 l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (312)
...++.... ...+|+.|++++| .+..++ .+..+++|+.|++++|... .+.. ....
T Consensus 213 ~~~~~~~~~----------~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~-----------~~~~ 269 (477)
T 2id5_A 213 LDTMTPNCL----------YGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEG-----------SMLH 269 (477)
T ss_dssp CCEECTTTT----------TTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCCC-EECT-----------TSCT
T ss_pred ccccCcccc----------cCccccEEECcCC-cccccCHHHhcCccccCeeECCCCcCC-ccCh-----------hhcc
Confidence 554443333 4458888888888 677776 5778888999988887643 3211 1345
Q ss_pred cCCCcCeeecccccccccccc-CCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHh
Q 045137 227 PFENLKSLDLSYLPELKSIFW-KPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEED 288 (312)
Q Consensus 227 ~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~ 288 (312)
.+++|++|.++++ .+..+.. ....+++|+.|+++++ +++.++........+++.+....|
T Consensus 270 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 270 ELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp TCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred ccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 6788999999886 4555533 3567889999999886 777777655444466666653333
No 3
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=3.9e-20 Score=168.92 Aligned_cols=241 Identities=20% Similarity=0.183 Sum_probs=158.0
Q ss_pred cCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCC
Q 045137 4 ISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGL 83 (312)
Q Consensus 4 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 83 (312)
.+++.++.+|.++. ++|++|+|++| .+..+++..+.++++|++|++++|.+.. .....+..+
T Consensus 61 c~~~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~---------------~~~~~~~~l 122 (452)
T 3zyi_A 61 CTRRGLSEVPQGIP--SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQ---------------IEVGAFNGL 122 (452)
T ss_dssp CCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCE---------------ECTTTTTTC
T ss_pred ECCCCcCccCCCCC--CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCC---------------cChhhccCc
Confidence 34556667775443 57788888887 6777655557788888888888777653 333456667
Q ss_pred CCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137 84 KYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR 161 (312)
Q Consensus 84 ~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 161 (312)
.+|+.|+++.+....++ .+..++ +|+.|+++++... .... ..+..+++|++|++++++.++.+....+.
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~----~L~~L~L~~N~l~-~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~--- 193 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLS----KLRELWLRNNPIE-SIPS-YAFNRVPSLMRLDLGELKKLEYISEGAFE--- 193 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCT----TCCEEECCSCCCC-EECT-TTTTTCTTCCEEECCCCTTCCEECTTTTT---
T ss_pred ccCCEEECCCCcCCccChhhhcccC----CCCEEECCCCCcc-eeCH-hHHhcCCcccEEeCCCCCCccccChhhcc---
Confidence 77777777766544332 233444 6777777765432 2211 45677788888888877777766655444
Q ss_pred ccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccc
Q 045137 162 KRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPE 241 (312)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 241 (312)
.+++|++|++++| .+..+|.+..+++|++|++++|...... + .....+++|++|.++++ .
T Consensus 194 ------~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~-~-----------~~~~~l~~L~~L~L~~n-~ 253 (452)
T 3zyi_A 194 ------GLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIR-P-----------GSFHGLSSLKKLWVMNS-Q 253 (452)
T ss_dssp ------TCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSEEC-G-----------GGGTTCTTCCEEECTTS-C
T ss_pred ------CCCCCCEEECCCC-cccccccccccccccEEECcCCcCcccC-c-----------ccccCccCCCEEEeCCC-c
Confidence 6788888888888 7777777778888888888877543322 1 13356678888888775 4
Q ss_pred ccccccC-CcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhhh
Q 045137 242 LKSIFWK-PLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNR 292 (312)
Q Consensus 242 l~~~~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~~ 292 (312)
+..+... ...+++|+.|+++++ +++.+|........+++.+....|-|.+
T Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 254 VSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCcCC
Confidence 5555433 456788888888875 7777776655555666666544444443
No 4
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=4.9e-20 Score=167.71 Aligned_cols=241 Identities=20% Similarity=0.209 Sum_probs=153.5
Q ss_pred cCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCC
Q 045137 4 ISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGL 83 (312)
Q Consensus 4 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 83 (312)
.++..++.+|.++. +++++|+|++| .+..++...+.++++|++|++++|.+.. .....+..+
T Consensus 50 c~~~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~---------------i~~~~~~~l 111 (440)
T 3zyj_A 50 CVRKNLREVPDGIS--TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRT---------------IEIGAFNGL 111 (440)
T ss_dssp CCSCCCSSCCSCCC--TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCE---------------ECGGGGTTC
T ss_pred eCCCCcCcCCCCCC--CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCc---------------cChhhccCC
Confidence 34556667775544 57777777777 6777665557777777777777776643 333456667
Q ss_pred CCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137 84 KYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR 161 (312)
Q Consensus 84 ~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 161 (312)
.+|+.|+++.+....++ .+..++ +|+.|+++++... .... ..+..+++|++|++++++.+..+....+.
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~----~L~~L~L~~N~i~-~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~--- 182 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLS----KLKELWLRNNPIE-SIPS-YAFNRIPSLRRLDLGELKRLSYISEGAFE--- 182 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCS----SCCEEECCSCCCC-EECT-TTTTTCTTCCEEECCCCTTCCEECTTTTT---
T ss_pred ccCCEEECCCCcCCeeCHhHhhccc----cCceeeCCCCccc-ccCH-HHhhhCcccCEeCCCCCCCcceeCcchhh---
Confidence 77777777766544332 234444 6777777765322 1111 35667778888888876666666554443
Q ss_pred ccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccc
Q 045137 162 KRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPE 241 (312)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 241 (312)
.+++|++|++++| .++.+|.+..+++|++|++++|.. ..+.+ .....+++|++|.++++ .
T Consensus 183 ------~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~-----------~~~~~l~~L~~L~L~~n-~ 242 (440)
T 3zyj_A 183 ------GLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHL-SAIRP-----------GSFQGLMHLQKLWMIQS-Q 242 (440)
T ss_dssp ------TCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCC-CEECT-----------TTTTTCTTCCEEECTTC-C
T ss_pred ------cccccCeecCCCC-cCccccccCCCcccCEEECCCCcc-CccCh-----------hhhccCccCCEEECCCC-c
Confidence 6778888888887 777777777788888888877753 33211 13456677888888775 4
Q ss_pred ccccccC-CcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhhh
Q 045137 242 LKSIFWK-PLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNR 292 (312)
Q Consensus 242 l~~~~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~~ 292 (312)
++.+... ...+++|+.|+++++ +++.+|........+++.+....|-|.+
T Consensus 243 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 243 IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred eeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCccC
Confidence 5555433 456778888888775 6777776655544666666544444443
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=2.5e-19 Score=156.73 Aligned_cols=214 Identities=20% Similarity=0.227 Sum_probs=172.7
Q ss_pred CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
+|+|++|.+..+|..++++++|++|+|++| .+..+|.. ++++++|++|++++|.+.. .+..+
T Consensus 85 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~-~~~l~~L~~L~Ls~n~l~~----------------lp~~l 146 (328)
T 4fcg_A 85 ALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDT-MQQFAGLETLTLARNPLRA----------------LPASI 146 (328)
T ss_dssp EEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSC-GGGGTTCSEEEEESCCCCC----------------CCGGG
T ss_pred EEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHH-HhccCCCCEEECCCCcccc----------------CcHHH
Confidence 378999999999999999999999999999 78899987 8999999999999998863 24457
Q ss_pred cCCCCceEEEEEecCh-hhHH-HH---------hhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCc
Q 045137 81 LGLKYLEVLELTLGSY-HALQ-IL---------LSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIEL 149 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~-~~~~-~l---------~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 149 (312)
..+++|+.|+++.+.. ..++ .+ ..++ +|+.|+++++... .++..+..+++|++|+++++ .+
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~----~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~N-~l 218 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV----NLQSLRLEWTGIR---SLPASIANLQNLKSLKIRNS-PL 218 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEEST----TCCEEEEEEECCC---CCCGGGGGCTTCCEEEEESS-CC
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCC----CCCEEECcCCCcC---cchHhhcCCCCCCEEEccCC-CC
Confidence 7889999999987532 1222 11 1244 8999999987543 34457889999999999987 55
Q ss_pred ceeeeeccccccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccC
Q 045137 150 EELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPF 228 (312)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (312)
..++.... .+++|++|++++|.....+| .++.+++|++|++++|.....+. .....+
T Consensus 219 ~~l~~~l~----------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p------------~~~~~l 276 (328)
T 4fcg_A 219 SALGPAIH----------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP------------LDIHRL 276 (328)
T ss_dssp CCCCGGGG----------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC------------TTGGGC
T ss_pred CcCchhhc----------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc------------hhhhcC
Confidence 55443322 78999999999996777777 78899999999999987765542 245778
Q ss_pred CCcCeeeccccccccccccCCcCCCCccEEEecC
Q 045137 229 ENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRA 262 (312)
Q Consensus 229 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 262 (312)
++|++|++++|+.++.++.....+++|+.+.+..
T Consensus 277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 9999999999999999988888999999998764
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=6.4e-19 Score=160.82 Aligned_cols=273 Identities=18% Similarity=0.138 Sum_probs=149.8
Q ss_pred CcccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccccc-ccCCCCccc------cCC
Q 045137 1 LLDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF-YEAPEDSVL------FGG 72 (312)
Q Consensus 1 ~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~-~~~~~~~~~------~~~ 72 (312)
+|+|++|.+..+ |..|+++++|++|++++|.....+++..+.++++|++|++++|.+..+ |..+..... .+-
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 113 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC
Confidence 478999999877 688999999999999999433467766689999999999999988654 222222110 000
Q ss_pred --ccchhhh--ccCCCCceEEEEEecChhhHH--H-HhhcccccccceEEEEeecCCCccccc-hh--------------
Q 045137 73 --GEVLIQE--LLGLKYLEVLELTLGSYHALQ--I-LLSSNKLKSCIRSLYLYLTGDKKSIID-AT-------------- 130 (312)
Q Consensus 73 --~~~~~~~--l~~L~~L~~l~l~~~~~~~~~--~-l~~l~~l~~~L~~L~l~~~~~~~~~~~-~~-------------- 130 (312)
....+.. +..+++|+.|+++.+...... . +.+++ +|+.|+++++........ ..
T Consensus 114 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~----~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR----RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT----TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC----cccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 1111222 555666666666655433221 1 33444 566666654421111000 00
Q ss_pred -----------------hhcCccccceEEeccCcC----------------cceeeee----------------------
Q 045137 131 -----------------AFTDLNHLNELWIDNGIE----------------LEELKID---------------------- 155 (312)
Q Consensus 131 -----------------~l~~l~~L~~L~l~~~~~----------------l~~l~~~---------------------- 155 (312)
.+..+++|++|+++++.- ++.+...
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 011224555555554411 0000000
Q ss_pred --------------ccccccccC-CCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccccceecccCccccC
Q 045137 156 --------------YTEIVRKRR-EPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAMEEIISVGKIAEN 218 (312)
Q Consensus 156 --------------~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 218 (312)
........+ ....+++|++|++++| .+..+ + .++.+++|++|++++|.. ..+.+
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~------- 340 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFL-GSIDS------- 340 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CEECG-------
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCcc-CCcCh-------
Confidence 000000000 0113455555555555 34333 2 445555566665555533 22111
Q ss_pred CCCCCCCccCCCcCeeeccccccccccc-cCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhhh
Q 045137 219 PEMMGHISPFENLKSLDLSYLPELKSIF-WKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNR 292 (312)
Q Consensus 219 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~~ 292 (312)
.....+++|++|+++++ .++.+. .....+++|+.|+++++ +++.+|........+++.+....+.|.+
T Consensus 341 ----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 341 ----RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp ----GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ----hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCccc
Confidence 13456789999999886 466653 34667999999999985 7888887665555777777644444433
No 7
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=1e-18 Score=152.94 Aligned_cols=222 Identities=18% Similarity=0.145 Sum_probs=160.2
Q ss_pred cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
|+|++|.++.+| ..|+.+++|++|++++| .+..+++..++.+++|++|++++|.+..+|.+ +
T Consensus 57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~----------------~ 119 (330)
T 1xku_A 57 LDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEK----------------M 119 (330)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS----------------C
T ss_pred EECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccChh----------------h
Confidence 678888888776 46888888888888888 77777444488888888888888877654421 1
Q ss_pred cCCCCceEEEEEecChhh--HHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137 81 LGLKYLEVLELTLGSYHA--LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE 158 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~--~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 158 (312)
.++|+.++++.+.... ...+..++ +|+.|+++++...........+..+++|++|+++++ .+..++..
T Consensus 120 --~~~L~~L~l~~n~l~~~~~~~~~~l~----~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~--- 189 (330)
T 1xku_A 120 --PKTLQELRVHENEITKVRKSVFNGLN----QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG--- 189 (330)
T ss_dssp --CTTCCEEECCSSCCCBBCHHHHTTCT----TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS---
T ss_pred --cccccEEECCCCcccccCHhHhcCCc----cccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcc---
Confidence 1577888887664432 23455666 788888887654332233357788889999999876 45443321
Q ss_pred cccccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeec
Q 045137 159 IVRKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDL 236 (312)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 236 (312)
.+++|++|++++| .+..+ + .+..+++|++|++++|...... + .....+++|++|++
T Consensus 190 ---------~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~-----------~~~~~l~~L~~L~L 247 (330)
T 1xku_A 190 ---------LPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVD-N-----------GSLANTPHLRELHL 247 (330)
T ss_dssp ---------CCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEEC-T-----------TTGGGSTTCCEEEC
T ss_pred ---------ccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCceeC-h-----------hhccCCCCCCEEEC
Confidence 4589999999998 66665 3 6888999999999988643322 1 13456899999999
Q ss_pred cccccccccccCCcCCCCccEEEecCCCCCCCCCCCCc
Q 045137 237 SYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSN 274 (312)
Q Consensus 237 ~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~ 274 (312)
+++ .+..++.....+++|+.|+++++ +++.++....
T Consensus 248 ~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f 283 (330)
T 1xku_A 248 NNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDF 283 (330)
T ss_dssp CSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSS
T ss_pred CCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhc
Confidence 996 57777767778999999999985 6888776555
No 8
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=3.7e-19 Score=162.42 Aligned_cols=217 Identities=16% Similarity=0.152 Sum_probs=168.1
Q ss_pred CcccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 1 LLDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 1 ~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
+|+|++|.|..+ |..|+++++|++|+|++| .+..+++..+.++++|++|++++|.+..+ ....
T Consensus 79 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~ 142 (452)
T 3zyi_A 79 YLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVI---------------PSGA 142 (452)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBC---------------CTTT
T ss_pred EEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCcc---------------Chhh
Confidence 478999999987 488999999999999999 88888877799999999999999988653 2344
Q ss_pred ccCCCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecc
Q 045137 80 LLGLKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT 157 (312)
Q Consensus 80 l~~L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 157 (312)
+..+++|+.|+++.+....++ .+.+++ +|+.|++.++........ ..+..+++|++|+++++ .+..++ .+
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~----~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~--~~ 214 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVP----SLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMC-NIKDMP--NL 214 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCT----TCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTS-CCSSCC--CC
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCC----cccEEeCCCCCCccccCh-hhccCCCCCCEEECCCC-cccccc--cc
Confidence 677889999999877665433 345566 899999998765554443 56888999999999976 555443 22
Q ss_pred ccccccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeee
Q 045137 158 EIVRKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLD 235 (312)
Q Consensus 158 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 235 (312)
. .+++|+.|++++| .+..+ + .+..+++|+.|++++|...... + .....+++|++|+
T Consensus 215 ~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~-----------~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 215 T---------PLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIE-R-----------NAFDGLASLVELN 272 (452)
T ss_dssp T---------TCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSCCCEEC-T-----------TTTTTCTTCCEEE
T ss_pred c---------ccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCcCceEC-H-----------HHhcCCCCCCEEE
Confidence 2 7899999999999 66665 4 7888999999999988643322 1 1346679999999
Q ss_pred ccccccccccccC-CcCCCCccEEEecCCC
Q 045137 236 LSYLPELKSIFWK-PLPFTHLKEMGVRACD 264 (312)
Q Consensus 236 l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 264 (312)
++++ .++.+... ...+++|+.|++.+++
T Consensus 273 L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 273 LAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 9986 67766654 4568899999988654
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=6e-19 Score=157.95 Aligned_cols=258 Identities=14% Similarity=0.099 Sum_probs=137.9
Q ss_pred CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCC-CCcc------ccC-
Q 045137 1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAP-EDSV------LFG- 71 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~-~~~~------~~~- 71 (312)
+|+|++|.+..+| ..|+.+++|++|++++| .+..+++..++++++|++|++++|.+..+|.++ .... ..+
T Consensus 73 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC
Confidence 3788889888876 58889999999999998 788887766889999999999998887655332 1110 000
Q ss_pred -CccchhhhccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcc
Q 045137 72 -GGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELE 150 (312)
Q Consensus 72 -~~~~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 150 (312)
........+..+++|+.|+++.+....+ .+..++ .|+.|++.+... ..+...++|++|+++++ .+.
T Consensus 152 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~----~L~~L~l~~n~l-------~~~~~~~~L~~L~l~~n-~l~ 218 (390)
T 3o6n_A 152 NLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIP----SLFHANVSYNLL-------STLAIPIAVEELDASHN-SIN 218 (390)
T ss_dssp CCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCT----TCSEEECCSSCC-------SEEECCSSCSEEECCSS-CCC
T ss_pred ccCccChhhccCCCCCCEEECCCCcCCcc-cccccc----ccceeecccccc-------cccCCCCcceEEECCCC-eee
Confidence 0111122244444555555544332221 112222 333333332211 01111223444444332 222
Q ss_pred eeeeecc-----------ccccccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccccceecccCcccc
Q 045137 151 ELKIDYT-----------EIVRKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAMEEIISVGKIAE 217 (312)
Q Consensus 151 ~l~~~~~-----------~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 217 (312)
.++.... .... .+....+++|++|++++| .+..+ + .++.+++|++|++++|.... +
T Consensus 219 ~~~~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~-------- 287 (390)
T 3o6n_A 219 VVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVA-L-------- 287 (390)
T ss_dssp EEECCCCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSCCCE-E--------
T ss_pred eccccccccccEEECCCCCCcc-cHHHcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCcCcc-c--------
Confidence 2111000 0000 000004556666666665 44443 2 45556666666666554322 1
Q ss_pred CCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhhh
Q 045137 218 NPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNR 292 (312)
Q Consensus 218 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~~ 292 (312)
......+++|++|+++++ .+..++.....+++|+.|+++++ +++.++.... ..++.+....+.|.+
T Consensus 288 ----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~---~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 288 ----NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTH---HTLKNLTLSHNDWDC 353 (390)
T ss_dssp ----ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCCCTT---CCCSEEECCSSCEEH
T ss_pred ----CcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-ccceeCchhh---ccCCEEEcCCCCccc
Confidence 113356788899988886 56666655667889999999886 4777764332 456666544444443
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=6e-19 Score=160.51 Aligned_cols=217 Identities=18% Similarity=0.181 Sum_probs=168.2
Q ss_pred CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
+|+|++|.+..++ ..|+++++|++|+|++| .+..++++.+.++++|++|++++|.+..+ ....
T Consensus 68 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~ 131 (440)
T 3zyj_A 68 LLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTI---------------PNGA 131 (440)
T ss_dssp EEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSC---------------CTTT
T ss_pred EEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCee---------------CHhH
Confidence 3789999999886 88999999999999999 89998877799999999999999988643 2345
Q ss_pred ccCCCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecc
Q 045137 80 LLGLKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT 157 (312)
Q Consensus 80 l~~L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 157 (312)
+..+++|+.|+++.+....++ .+..++ +|+.|++.++........ ..+..+++|++|+++++ .+..++ .+
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~----~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~--~~ 203 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAFNRIP----SLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMC-NLREIP--NL 203 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTTTTCT----TCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTS-CCSSCC--CC
T ss_pred hhccccCceeeCCCCcccccCHHHhhhCc----ccCEeCCCCCCCcceeCc-chhhcccccCeecCCCC-cCcccc--cc
Confidence 778889999999877654433 345556 899999988655544433 56888999999999987 555443 12
Q ss_pred ccccccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeee
Q 045137 158 EIVRKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLD 235 (312)
Q Consensus 158 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 235 (312)
. .+++|+.|++++| .+..+ + .+..+++|+.|++++|... .+.+ .....+++|++|+
T Consensus 204 ~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-----------~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 204 T---------PLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIER-----------NAFDNLQSLVEIN 261 (440)
T ss_dssp T---------TCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCC-EECT-----------TSSTTCTTCCEEE
T ss_pred C---------CCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCcee-EECh-----------hhhcCCCCCCEEE
Confidence 2 7899999999999 77775 3 7888999999999988643 3311 1345678999999
Q ss_pred ccccccccccccC-CcCCCCccEEEecCCC
Q 045137 236 LSYLPELKSIFWK-PLPFTHLKEMGVRACD 264 (312)
Q Consensus 236 l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 264 (312)
++++ .++.+... ...+++|+.|++.+.+
T Consensus 262 L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 262 LAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 9986 67776654 4568999999987643
No 11
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=160.71 Aligned_cols=247 Identities=17% Similarity=0.123 Sum_probs=110.2
Q ss_pred cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
|++++|.++.+| ..|+.+++|++|++++| .+..+++..+.++++|++|++++|.+..+ ....+
T Consensus 57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------~~~~~ 120 (353)
T 2z80_A 57 LDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNL---------------SSSWF 120 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSC---------------CHHHH
T ss_pred EECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcC---------------CHhHh
Confidence 445555555444 24555555555555555 44444433355555555555555544321 11224
Q ss_pred cCCCCceEEEEEecChhhHHH---HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecc
Q 045137 81 LGLKYLEVLELTLGSYHALQI---LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT 157 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~~---l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 157 (312)
..+++|+.|+++.+....++. +..++ +|+.|+++++........ ..+..+++|++|+++++ .+.......+
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~----~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~l 194 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLT----KLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDAS-DLQSYEPKSL 194 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCT----TCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEET-TCCEECTTTT
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCC----CCcEEECCCCccccccCH-HHccCCCCCCEEECCCC-CcCccCHHHH
Confidence 445555555554443332221 22333 455555555422121111 34445555555555544 2333322222
Q ss_pred ccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeee
Q 045137 158 EIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLD 235 (312)
Q Consensus 158 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 235 (312)
. .+++|++|++++| .+..++ .++.+++|++|++++|......... .......+.++.+.
T Consensus 195 ~---------~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---------l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 195 K---------SIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSE---------LSTGETNSLIKKFT 255 (353)
T ss_dssp T---------TCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------CCCCCCEEE
T ss_pred h---------ccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCccccccccc---------cccccccchhhccc
Confidence 2 4555556666555 344433 2233556666666555432211000 00111223344444
Q ss_pred ccccc----cccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhh
Q 045137 236 LSYLP----ELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWW 290 (312)
Q Consensus 236 l~~~~----~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~ 290 (312)
+.++. .+..++.....+++|+.|+++++ +++.+|........+++.+....|-|
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 43321 01112222345778888888775 67777765543335666665443333
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=158.79 Aligned_cols=250 Identities=18% Similarity=0.181 Sum_probs=138.2
Q ss_pred CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
+|+|++|.++.++ ..|+++++|++|+|++| .+..+++..+.++++|++|++++|.+..++.+ .
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------~ 99 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG---------------V 99 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTT---------------S
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcc---------------c
Confidence 3789999999885 78999999999999999 88888666699999999999999988765432 2
Q ss_pred ccCCCCceEEEEEecChhhH--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecc
Q 045137 80 LLGLKYLEVLELTLGSYHAL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYT 157 (312)
Q Consensus 80 l~~L~~L~~l~l~~~~~~~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 157 (312)
+..+++|+.|+++.+..... ..+..++ +|+.|++.++.... .. ...+..+++|++|+++++ .+..+....+
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~----~L~~L~l~~n~l~~-~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~l 172 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVILLDYMFQDLY----NLKSLEVGDNDLVY-IS-HRAFSGLNSLEQLTLEKC-NLTSIPTEAL 172 (477)
T ss_dssp STTCTTCCEEECTTSCCCEECTTTTTTCT----TCCEEEECCTTCCE-EC-TTSSTTCTTCCEEEEESC-CCSSCCHHHH
T ss_pred ccCCCCCCEEECCCCccccCChhHccccc----cCCEEECCCCccce-eC-hhhccCCCCCCEEECCCC-cCcccChhHh
Confidence 34445555555544332211 1222333 45555555432111 11 123444455555555543 3333322222
Q ss_pred ccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCcc-----------ccCCCCC-C
Q 045137 158 EIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKI-----------AENPEMM-G 223 (312)
Q Consensus 158 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~-----------~~~~~~~-~ 223 (312)
. .+++|+.|++++| .+..++ .+..+++|++|++++|.....+...... ..+..+. .
T Consensus 173 ~---------~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 242 (477)
T 2id5_A 173 S---------HLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242 (477)
T ss_dssp T---------TCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH
T ss_pred c---------ccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH
Confidence 2 3444444444444 333322 3344444444444444332222110000 0000000 1
Q ss_pred CCccCCCcCeeeccccccccccccC-CcCCCCccEEEecCCCCCCCCCCCCccccccceEeee
Q 045137 224 HISPFENLKSLDLSYLPELKSIFWK-PLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRG 285 (312)
Q Consensus 224 ~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~ 285 (312)
....+++|++|+++++. +..+... ...+++|+.|+++++ +++.++........+++.+..
T Consensus 243 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp HHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEEC
T ss_pred HhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEEC
Confidence 23567888888888863 5555443 556888999998875 566655444444455665543
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=1.4e-18 Score=153.09 Aligned_cols=36 Identities=22% Similarity=0.141 Sum_probs=19.7
Q ss_pred cccccceEeecCCCCcccCCccCCCCCCceEEEeecc
Q 045137 168 VFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCR 204 (312)
Q Consensus 168 ~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~ 204 (312)
.+++|++|++++| .+..++.+..+++|++|++++|.
T Consensus 219 ~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 219 NMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTNQ 254 (347)
T ss_dssp GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred cCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCCc
Confidence 4455555555555 44444445555555555555553
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=1.7e-18 Score=152.42 Aligned_cols=241 Identities=17% Similarity=0.144 Sum_probs=154.5
Q ss_pred CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCc------cccCCcc
Q 045137 1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDS------VLFGGGE 74 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~~~~~ 74 (312)
+|++++|.+..+| .++.+++|++|++++| .+..++. +..+++|++|++++|........+... ...+...
T Consensus 92 ~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 92 NLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV 167 (347)
T ss_dssp EEECCSSCCCCCG-GGTTCTTCSEEECTTS-CCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC
T ss_pred EEEccCCcccCch-HHcCCCcCCEEECcCC-cccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc
Confidence 3788899888886 6899999999999999 7887776 888899999999888543211111110 0001111
Q ss_pred chhhhccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeee
Q 045137 75 VLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKI 154 (312)
Q Consensus 75 ~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~ 154 (312)
.....+..+++|+.++++.+....+..+..++ +|+.+++.++.... . ..+..+++|++|+++++ .+..+..
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~----~L~~L~l~~n~l~~---~-~~~~~~~~L~~L~l~~n-~l~~~~~ 238 (347)
T 4fmz_A 168 KDVTPIANLTDLYSLSLNYNQIEDISPLASLT----SLHYFTAYVNQITD---I-TPVANMTRLNSLKIGNN-KITDLSP 238 (347)
T ss_dssp CCCGGGGGCTTCSEEECTTSCCCCCGGGGGCT----TCCEEECCSSCCCC---C-GGGGGCTTCCEEECCSS-CCCCCGG
T ss_pred CCchhhccCCCCCEEEccCCcccccccccCCC----ccceeecccCCCCC---C-chhhcCCcCCEEEccCC-ccCCCcc
Confidence 11222445555666665544443333344444 56666655542211 1 12566777888888766 3443332
Q ss_pred eccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCee
Q 045137 155 DYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSL 234 (312)
Q Consensus 155 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 234 (312)
.. .+++|++|++++| .+..++.+..+++|++|++++|.. ..+ + ....+++|++|
T Consensus 239 --~~---------~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~-~------------~~~~l~~L~~L 292 (347)
T 4fmz_A 239 --LA---------NLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQI-SDI-S------------VLNNLSQLNSL 292 (347)
T ss_dssp --GT---------TCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCC-G------------GGGGCTTCSEE
T ss_pred --hh---------cCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCcc-CCC-h------------hhcCCCCCCEE
Confidence 22 7899999999999 788888888999999999998854 332 1 34678999999
Q ss_pred eccccccccccc-cCCcCCCCccEEEecCCCCCCCCCCCCccccccceEee
Q 045137 235 DLSYLPELKSIF-WKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIR 284 (312)
Q Consensus 235 ~l~~~~~l~~~~-~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~ 284 (312)
+++++. +.... .....+++|+.|++++|+ ++.++. ......++.+.
T Consensus 293 ~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~ 339 (347)
T 4fmz_A 293 FLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP--LASLSKMDSAD 339 (347)
T ss_dssp ECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCCGG--GGGCTTCSEES
T ss_pred ECcCCc-CCCcChhHhhccccCCEEEccCCc-cccccC--hhhhhccceee
Confidence 999974 44443 235678999999999985 666544 22224555543
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=8.4e-19 Score=151.81 Aligned_cols=241 Identities=15% Similarity=0.154 Sum_probs=149.2
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
++.+++.++.+|.++. ++|++|++++| .+..+|.+++.++++|++|++++|.+...+ .....+.
T Consensus 12 l~c~~~~l~~ip~~~~--~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-------------~~~~~~~ 75 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKG-------------CCSQSDF 75 (306)
T ss_dssp EECCSSCCSSCCSCCC--TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEE-------------EEEHHHH
T ss_pred EEcCCCCcccCCCCCC--CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCccc-------------Ccccccc
Confidence 4566777888886443 68888888888 788888876788888888888888775321 1133444
Q ss_pred CCCCceEEEEEecChhhHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137 82 GLKYLEVLELTLGSYHALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV 160 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 160 (312)
.+.+|+.|+++.+....++ .+..++ +|+.|+++++... .......+..+++|++|+++++ .+.......+.
T Consensus 76 ~~~~L~~L~Ls~n~i~~l~~~~~~l~----~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-- 147 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVITMSSNFLGLE----QLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFN-- 147 (306)
T ss_dssp SCSCCCEEECCSCSEEEEEEEEETCT----TCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTT--
T ss_pred cccccCEEECCCCccccChhhcCCCC----CCCEEECCCCccc-ccccchhhhhccCCCEEECCCC-cCCccchhhcc--
Confidence 5777888887766543322 233444 6778877754221 1111135677788888888865 34333323232
Q ss_pred cccCCCCcccccceEeecCCCCccc--CC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecc
Q 045137 161 RKRREPFVFHSLHLVTIYSCHKLKD--ST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLS 237 (312)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~~l~~--l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 237 (312)
.+++|++|++++| .+.. +| .++.+++|++|++++|.... ..+ .....+++|++|+++
T Consensus 148 -------~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-----------~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 148 -------GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSP-----------TAFNSLSSLQVLNMS 207 (306)
T ss_dssp -------TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCE-ECT-----------TTTTTCTTCCEEECT
T ss_pred -------cCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCCcCC-cCH-----------HHhcCCCCCCEEECC
Confidence 6788888888887 5543 44 67778888888888775432 211 133566788888887
Q ss_pred cccccccccc-CCcCCCCccEEEecCCCCCCCCCCCCcc-ccccceEeeehHh
Q 045137 238 YLPELKSIFW-KPLPFTHLKEMGVRACDQLRKLPLDSNS-AKERKFVIRGEED 288 (312)
Q Consensus 238 ~~~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~~~~~-~~~~l~~i~~~~~ 288 (312)
++ .+..+.. ....+++|+.|+++++ +++..+..... .+.+++.+....+
T Consensus 208 ~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 208 HN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TS-CCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CC-ccCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCC
Confidence 75 3544433 2455788888888876 45443332222 2235665543333
No 16
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=2.8e-18 Score=150.30 Aligned_cols=108 Identities=14% Similarity=0.025 Sum_probs=73.7
Q ss_pred cccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccccccc
Q 045137 168 VFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSI 245 (312)
Q Consensus 168 ~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 245 (312)
.+++|++|++++| .+..++ .+..+++|++|++++|...... + .....+++|++|+++++ .++.+
T Consensus 191 ~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~-----------~~~~~l~~L~~L~L~~N-~l~~l 256 (332)
T 2ft3_A 191 LPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIE-N-----------GSLSFLPTLRELHLDNN-KLSRV 256 (332)
T ss_dssp SCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-T-----------TGGGGCTTCCEEECCSS-CCCBC
T ss_pred ccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCC-h-----------hHhhCCCCCCEEECCCC-cCeec
Confidence 3468888888888 666654 5777888888888887543221 1 13457789999999886 57777
Q ss_pred ccCCcCCCCccEEEecCCCCCCCCCCCCccc------cccceEeeehHhhh
Q 045137 246 FWKPLPFTHLKEMGVRACDQLRKLPLDSNSA------KERKFVIRGEEDWW 290 (312)
Q Consensus 246 ~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~------~~~l~~i~~~~~~~ 290 (312)
+.....+++|+.|+++++ +++.++...... ...++.+....+.|
T Consensus 257 p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcc
Confidence 776778999999999985 677777554432 23455555444333
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.7e-18 Score=163.38 Aligned_cols=62 Identities=21% Similarity=0.248 Sum_probs=39.4
Q ss_pred CccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhh
Q 045137 225 ISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN 291 (312)
Q Consensus 225 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~ 291 (312)
...+++|+.|+++++ .+..++.....+++|+.|++++| .++.++.... ..++.+....|.|.
T Consensus 297 ~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 297 GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTH---HTLKNLTLSHNDWD 358 (597)
T ss_dssp SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCCCTT---CCCSEEECCSSCEE
T ss_pred cccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CCCCcChhhc---CCCCEEEeeCCCCC
Confidence 345778888888775 45566555566788888888885 4666664333 45666654444443
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=1.9e-18 Score=149.61 Aligned_cols=216 Identities=18% Similarity=0.210 Sum_probs=158.7
Q ss_pred CcccCCCCCccccHH-hhCCCCCcEEecCCCCCcccc---CchhhhccccccEEEEecccccccccCCCCccccCCccch
Q 045137 1 LLDISHTTIRELPEE-LKLLVNLKCLNLRWTGALIRI---PRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVL 76 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~l---p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 76 (312)
+|+|++|.++.+|.+ |+++++|++|++++| .+..+ +.. +..+++|++|++++|.+..+
T Consensus 32 ~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l---------------- 93 (306)
T 2z66_A 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFNGVITM---------------- 93 (306)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSCSEEEE----------------
T ss_pred EEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCCccccC----------------
Confidence 378999999999854 799999999999999 77655 444 77899999999999988643
Q ss_pred hhhccCCCCceEEEEEecChhhHH---HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcce-e
Q 045137 77 IQELLGLKYLEVLELTLGSYHALQ---ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEE-L 152 (312)
Q Consensus 77 ~~~l~~L~~L~~l~l~~~~~~~~~---~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~-l 152 (312)
...+..+++|+.|+++.+...... .+..++ +|+.|+++++.... .....+..+++|++|+++++ .+.. .
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~----~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n-~l~~~~ 166 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR----NLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGN-SFQENF 166 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTTTTTTTTCT----TCCEEECTTSCCEE--CSTTTTTTCTTCCEEECTTC-EEGGGE
T ss_pred hhhcCCCCCCCEEECCCCcccccccchhhhhcc----CCCEEECCCCcCCc--cchhhcccCcCCCEEECCCC-cccccc
Confidence 234677889999998766544332 345555 89999988764321 22256788899999999986 3433 2
Q ss_pred eeeccccccccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCC
Q 045137 153 KIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFEN 230 (312)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (312)
....+. .+++|++|++++| .+..+ + .++.+++|++|++++|...... . .....+++
T Consensus 167 ~~~~~~---------~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~-----------~~~~~l~~ 224 (306)
T 2z66_A 167 LPDIFT---------ELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-T-----------FPYKCLNS 224 (306)
T ss_dssp ECSCCT---------TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCC-S-----------GGGTTCTT
T ss_pred chhHHh---------hCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccC-h-----------hhccCccc
Confidence 233333 7899999999999 67775 4 7888999999999988643322 1 12356899
Q ss_pred cCeeeccccccccccc-cCCcCC-CCccEEEecCCC
Q 045137 231 LKSLDLSYLPELKSIF-WKPLPF-THLKEMGVRACD 264 (312)
Q Consensus 231 L~~L~l~~~~~l~~~~-~~~~~~-~~L~~L~i~~c~ 264 (312)
|++|+++++. +.... .....+ ++|+.|++++++
T Consensus 225 L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 225 LQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCC
Confidence 9999999974 54443 334556 489999998754
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=1.2e-18 Score=151.46 Aligned_cols=222 Identities=17% Similarity=0.159 Sum_probs=163.1
Q ss_pred cccCCCCCc---cccHHhhCCCCCcEEecCC-CCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchh
Q 045137 2 LDISHTTIR---ELPEELKLLVNLKCLNLRW-TGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLI 77 (312)
Q Consensus 2 L~Ls~~~i~---~lp~~i~~L~~L~~L~L~~-~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (312)
|+|+++.+. .+|..|+++++|++|++++ |.....+|.. ++++++|++|++++|.+.. ..+
T Consensus 55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~---------------~~p 118 (313)
T 1ogq_A 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSG---------------AIP 118 (313)
T ss_dssp EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEE---------------ECC
T ss_pred EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCC---------------cCC
Confidence 688999987 6899999999999999995 6344467776 9999999999999998853 445
Q ss_pred hhccCCCCceEEEEEecChh--hHHHHhhcccccccceEEEEeecCCCccccchhhhcCcc-ccceEEeccCcCcceeee
Q 045137 78 QELLGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLN-HLNELWIDNGIELEELKI 154 (312)
Q Consensus 78 ~~l~~L~~L~~l~l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~ 154 (312)
..+..+++|+.|+++.+... ....+..++ +|+.|++.++... ..++..+..++ +|++|+++++ .+.....
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~----~L~~L~L~~N~l~--~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~ 191 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLP----NLVGITFDGNRIS--GAIPDSYGSFSKLFTSMTISRN-RLTGKIP 191 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCT----TCCEEECCSSCCE--EECCGGGGCCCTTCCEEECCSS-EEEEECC
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCC----CCCeEECcCCccc--CcCCHHHhhhhhcCcEEECcCC-eeeccCC
Confidence 56788899999999877554 223456666 8999999876432 12335777777 8999999976 4443333
Q ss_pred eccccccccCCCCcccccceEeecCCCCccc-CC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcC
Q 045137 155 DYTEIVRKRREPFVFHSLHLVTIYSCHKLKD-ST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLK 232 (312)
Q Consensus 155 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 232 (312)
..+. .+. |+.|++++| .+.. .+ .++.+++|++|++++|.....+ + ....+++|+
T Consensus 192 ~~~~---------~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~------------~~~~l~~L~ 247 (313)
T 1ogq_A 192 PTFA---------NLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSLAFDL-G------------KVGLSKNLN 247 (313)
T ss_dssp GGGG---------GCC-CSEEECCSS-EEEECCGGGCCTTSCCSEEECCSSEECCBG-G------------GCCCCTTCC
T ss_pred hHHh---------CCc-ccEEECcCC-cccCcCCHHHhcCCCCCEEECCCCceeeec-C------------cccccCCCC
Confidence 3332 444 999999998 6654 44 6788999999999988653322 2 235678999
Q ss_pred eeecccccccc-ccccCCcCCCCccEEEecCCCCCC-CCCCC
Q 045137 233 SLDLSYLPELK-SIFWKPLPFTHLKEMGVRACDQLR-KLPLD 272 (312)
Q Consensus 233 ~L~l~~~~~l~-~~~~~~~~~~~L~~L~i~~c~~L~-~l~~~ 272 (312)
+|+++++. +. .++.....+++|+.|+++++. ++ .+|..
T Consensus 248 ~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~ 287 (313)
T 1ogq_A 248 GLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNN-LCGEIPQG 287 (313)
T ss_dssp EEECCSSC-CEECCCGGGGGCTTCCEEECCSSE-EEEECCCS
T ss_pred EEECcCCc-ccCcCChHHhcCcCCCEEECcCCc-ccccCCCC
Confidence 99999864 44 455556778999999999874 44 56654
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=6.1e-18 Score=144.91 Aligned_cols=215 Identities=15% Similarity=0.163 Sum_probs=155.7
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
++.+++.++.+|.++ .++|++|++++| .+..+++..+.++++|++|++++|.+.. .....+.
T Consensus 16 ~~c~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~---------------~~~~~~~ 77 (285)
T 1ozn_A 16 TSCPQQGLQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLAR---------------IDAAAFT 77 (285)
T ss_dssp EECCSSCCSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCE---------------ECTTTTT
T ss_pred EEcCcCCcccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccce---------------eCHhhcC
Confidence 466778888998644 579999999999 8888887778999999999999998854 3345677
Q ss_pred CCCCceEEEEEecC-hhhH--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137 82 GLKYLEVLELTLGS-YHAL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE 158 (312)
Q Consensus 82 ~L~~L~~l~l~~~~-~~~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 158 (312)
.+++|+.++++.+. ...+ ..+..++ +|+.|++.++.... . .+..+..+++|++|+++++ .+..+....+.
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~----~L~~L~l~~n~l~~-~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 150 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLG----RLHTLHLDRCGLQE-L-GPGLFRGLAALQYLYLQDN-ALQALPDDTFR 150 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCT----TCCEEECTTSCCCC-C-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCc----CCCEEECCCCcCCE-E-CHhHhhCCcCCCEEECCCC-cccccCHhHhc
Confidence 78899999998764 3322 2344555 78888888764322 1 1246777889999999876 55555444333
Q ss_pred cccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeec
Q 045137 159 IVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDL 236 (312)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 236 (312)
.+++|++|++++| .++.++ .++.+++|++|++++|...... + .....+++|++|++
T Consensus 151 ---------~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-----------~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 151 ---------DLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVH-P-----------HAFRDLGRLMTLYL 208 (285)
T ss_dssp ---------TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEEC-T-----------TTTTTCTTCCEEEC
T ss_pred ---------cCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccC-H-----------hHccCcccccEeeC
Confidence 6889999999988 777765 4778899999999888643321 1 13456788999999
Q ss_pred cccccccccccC-CcCCCCccEEEecCCC
Q 045137 237 SYLPELKSIFWK-PLPFTHLKEMGVRACD 264 (312)
Q Consensus 237 ~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 264 (312)
+++ .++.+... ...+++|+.|++++++
T Consensus 209 ~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 209 FAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 886 46555433 4568888888888754
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.75 E-value=3.8e-17 Score=149.66 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=51.3
Q ss_pred cccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccc----------cCCCCCCCCccCCCcCeeecc
Q 045137 168 VFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIA----------ENPEMMGHISPFENLKSLDLS 237 (312)
Q Consensus 168 ~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~L~~L~l~ 237 (312)
.+++|+.|++++| .+..++.+..+++|++|++++|...... +..... .+.... ....+++|++|+++
T Consensus 219 ~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 219 ILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELN 295 (466)
T ss_dssp GCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECC
T ss_pred ccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCCccccch-hhhcCCCCCEEECCCCccCccc-cccCCCccCeEEcC
Confidence 4455555555555 4444455555555555555555322111 100000 000000 13445666666666
Q ss_pred ccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeeh
Q 045137 238 YLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGE 286 (312)
Q Consensus 238 ~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~ 286 (312)
++ .++.+.. ...+++|+.|++++| +++.++. .....+++.+...
T Consensus 296 ~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 296 EN-QLEDISP-ISNLKNLTYLTLYFN-NISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp SS-CCSCCGG-GGGCTTCSEEECCSS-CCSCCGG--GGGCTTCCEEECC
T ss_pred CC-cccCchh-hcCCCCCCEEECcCC-cCCCchh--hccCccCCEeECC
Confidence 64 3443332 445677777777776 4444432 1222555555433
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.75 E-value=5.2e-18 Score=160.28 Aligned_cols=185 Identities=19% Similarity=0.188 Sum_probs=102.5
Q ss_pred cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccccccc-CCCCcc------ccCC-
Q 045137 2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYE-APEDSV------LFGG- 72 (312)
Q Consensus 2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~~------~~~~- 72 (312)
|++++|.+..++ ..|+.+++|++|++++| .+..+|.+ +.++++|++|++++|.+..++. .+.... ..+.
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence 577788887776 45788888888888888 77778776 7888888888888887765421 111110 0000
Q ss_pred --ccchhhhccCCCCceEEEEEecChhhH----HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137 73 --GEVLIQELLGLKYLEVLELTLGSYHAL----QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG 146 (312)
Q Consensus 73 --~~~~~~~l~~L~~L~~l~l~~~~~~~~----~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 146 (312)
.......+..+++|+.++++.+..... ..+..++ +|+.|+++++... .. .+..+..+++|++|+++++
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~----~L~~L~l~~n~l~-~~-~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS----HLQSLNLSYNEPL-SL-KTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT----TCCEEECCSCSCE-EE-CTTTTTTCTTCSEEECTTC
T ss_pred cccccchhhhhccCcCCEEECCCCccccccCcchhcccCC----CCCEEECCCCcCC-cC-CHHHhcCCccCCeEECCCC
Confidence 011122345556666666654433221 1233444 5666666654321 11 1134555666666666654
Q ss_pred cCcceee-eeccccccccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccc
Q 045137 147 IELEELK-IDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRA 205 (312)
Q Consensus 147 ~~l~~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~ 205 (312)
.+.... ...+. .+++|+.|++++| .+... + .++.+++|++|++++|..
T Consensus 411 -~l~~~~~~~~~~---------~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 411 -RLKVKDAQSPFQ---------NLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp -CEECCTTCCTTT---------TCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred -cCCCcccchhhh---------CcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 222211 11121 5667777777776 44443 3 466677777777776654
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=6.5e-18 Score=159.44 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=48.8
Q ss_pred CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccC
Q 045137 1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEA 63 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 63 (312)
+|+|++|.+..+| ..|+.+++|++|+|++| .+..+|+..++++++|++|++++|.+..+|..
T Consensus 79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 141 (597)
T 3oja_B 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141 (597)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred EEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHH
Confidence 3678888888776 57888888888888888 77777776678888888888888887765543
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=3.1e-17 Score=150.24 Aligned_cols=252 Identities=15% Similarity=0.144 Sum_probs=120.0
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccc------cCCccc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVL------FGGGEV 75 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~------~~~~~~ 75 (312)
|+|++|.+..+|. ++.+++|++|++++| .+..+++ ++++++|++|++++|.+..++. +..... .+....
T Consensus 73 L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~ 147 (466)
T 1o6v_A 73 INFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTIS 147 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEEC
T ss_pred EECCCCccCCchh-hhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccC
Confidence 5666666666654 666666666666666 5555554 5566666666666655544331 111000 000001
Q ss_pred hhhh---------------------ccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcC
Q 045137 76 LIQE---------------------LLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTD 134 (312)
Q Consensus 76 ~~~~---------------------l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~ 134 (312)
.+.. +..+++|+.++++.+....+..+..++ +|+.|++.++..... ..++.
T Consensus 148 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~----~L~~L~l~~n~l~~~----~~~~~ 219 (466)
T 1o6v_A 148 DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT----NLESLIATNNQISDI----TPLGI 219 (466)
T ss_dssp CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT----TCSEEECCSSCCCCC----GGGGG
T ss_pred CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCC----CCCEEEecCCccccc----ccccc
Confidence 1112 333444444444433332222333333 444554444321111 11333
Q ss_pred ccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCc
Q 045137 135 LNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGK 214 (312)
Q Consensus 135 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 214 (312)
+++|++|+++++ .+..+ ..+. .+++|+.|++++| .+..++.+..+++|++|++++|...... +...
T Consensus 220 l~~L~~L~l~~n-~l~~~--~~l~---------~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~ 285 (466)
T 1o6v_A 220 LTNLDELSLNGN-QLKDI--GTLA---------SLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISNIS-PLAG 285 (466)
T ss_dssp CTTCCEEECCSS-CCCCC--GGGG---------GCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTT
T ss_pred cCCCCEEECCCC-Ccccc--hhhh---------cCCCCCEEECCCC-ccccchhhhcCCCCCEEECCCCccCccc-cccC
Confidence 445555555543 22221 1111 4455555555555 4444444445555555555544321111 1000
Q ss_pred cc----------cCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEee
Q 045137 215 IA----------ENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIR 284 (312)
Q Consensus 215 ~~----------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~ 284 (312)
.. .+... .....+++|++|+++++ .+..+.. ...+++|+.|++++| +++.++. .....+++.+.
T Consensus 286 l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~ 359 (466)
T 1o6v_A 286 LTALTNLELNENQLEDI-SPISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDVSS--LANLTNINWLS 359 (466)
T ss_dssp CTTCSEEECCSSCCSCC-GGGGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEE
T ss_pred CCccCeEEcCCCcccCc-hhhcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCchh--hccCCCCCEEe
Confidence 00 00000 12567899999999997 4555543 567999999999997 6666642 22225566655
Q ss_pred eh
Q 045137 285 GE 286 (312)
Q Consensus 285 ~~ 286 (312)
..
T Consensus 360 l~ 361 (466)
T 1o6v_A 360 AG 361 (466)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.74 E-value=1.6e-17 Score=156.94 Aligned_cols=176 Identities=18% Similarity=0.097 Sum_probs=100.7
Q ss_pred HHhhCCC--CCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccc------cCC--ccchhhhccCC
Q 045137 14 EELKLLV--NLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVL------FGG--GEVLIQELLGL 83 (312)
Q Consensus 14 ~~i~~L~--~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~------~~~--~~~~~~~l~~L 83 (312)
..+..+. +|++|++++| .+..+++..++++++|++|++++|.+..+|..+..... .+. .......+..+
T Consensus 246 ~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp GGGGGGGGSEEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred hHhchhhcCceeEEEeecC-ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence 4444444 8999999999 88898888799999999999999998876654432211 000 11112344455
Q ss_pred CCceEEEEEecChh-hH--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137 84 KYLEVLELTLGSYH-AL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV 160 (312)
Q Consensus 84 ~~L~~l~l~~~~~~-~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 160 (312)
++|+.++++.+... .+ ..+..++ +|+.|+++++...........+..+++|++|+++++ .+..+....+.
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~----~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-- 397 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLE----NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFK-- 397 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCT----TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTT--
T ss_pred CcCCEEECCCCCcccccchhhhhccC----cCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhc--
Confidence 55555555543221 00 1123333 555666555433222211234555666666666654 33333322222
Q ss_pred cccCCCCcccccceEeecCCCCcccC-C--ccCCCCCCceEEEeeccc
Q 045137 161 RKRREPFVFHSLHLVTIYSCHKLKDS-T--FLAFAPNLKSLSLFKCRA 205 (312)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~~l~~l-~--~l~~l~~L~~L~l~~~~~ 205 (312)
.+++|++|++++| .+... + .+..+++|++|++++|..
T Consensus 398 -------~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 398 -------ECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp -------TCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred -------CCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCcc
Confidence 5677777777777 44432 2 366677777777777654
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=1.2e-18 Score=151.37 Aligned_cols=224 Identities=17% Similarity=0.114 Sum_probs=163.6
Q ss_pred CcccCC-CCCc-cccHHhhCCCCCcEEecCCCCCcc-ccCchhhhccccccEEEEecccccccccCCCCccccCCccchh
Q 045137 1 LLDISH-TTIR-ELPEELKLLVNLKCLNLRWTGALI-RIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLI 77 (312)
Q Consensus 1 ~L~Ls~-~~i~-~lp~~i~~L~~L~~L~L~~~~~~~-~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (312)
+|+|++ |.+. .+|..|+++++|++|++++| .+. .+|.. +.++++|++|++++|.+.. ..+
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~---------------~~p 142 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYNALSG---------------TLP 142 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSSEEES---------------CCC
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHH-HhCCCCCCEEeCCCCccCC---------------cCC
Confidence 367884 7776 78999999999999999999 666 67775 9999999999999998853 445
Q ss_pred hhccCCCCceEEEEEecChh-hH-HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeee
Q 045137 78 QELLGLKYLEVLELTLGSYH-AL-QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKID 155 (312)
Q Consensus 78 ~~l~~L~~L~~l~l~~~~~~-~~-~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 155 (312)
..+..+++|+.|+++.+... .+ ..+..+. ..|+.|+++++... ...+..+..++ |++|+++++ .+......
T Consensus 143 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~---~~L~~L~L~~N~l~--~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~ 215 (313)
T 1ogq_A 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFS---KLFTSMTISRNRLT--GKIPPTFANLN-LAFVDLSRN-MLEGDASV 215 (313)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGCCC---TTCCEEECCSSEEE--EECCGGGGGCC-CSEEECCSS-EEEECCGG
T ss_pred hHHhcCCCCCeEECcCCcccCcCCHHHhhhh---hcCcEEECcCCeee--ccCChHHhCCc-ccEEECcCC-cccCcCCH
Confidence 66788899999999877653 22 2333332 26888988865321 12335666666 999999976 44443333
Q ss_pred ccccccccCCCCcccccceEeecCCCCcc-cCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCee
Q 045137 156 YTEIVRKRREPFVFHSLHLVTIYSCHKLK-DSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSL 234 (312)
Q Consensus 156 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 234 (312)
.+. .+++|+.|++++| .+. .++.+..+++|++|++++|.....+ + .....+++|++|
T Consensus 216 ~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p-----------~~l~~l~~L~~L 273 (313)
T 1ogq_A 216 LFG---------SDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTL-P-----------QGLTQLKFLHSL 273 (313)
T ss_dssp GCC---------TTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECC-C-----------GGGGGCTTCCEE
T ss_pred HHh---------cCCCCCEEECCCC-ceeeecCcccccCCCCEEECcCCcccCcC-C-----------hHHhcCcCCCEE
Confidence 333 7899999999999 555 4567788999999999998754332 2 245678999999
Q ss_pred eccccccccccccCCcCCCCccEEEecCCCCCCCCCC
Q 045137 235 DLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPL 271 (312)
Q Consensus 235 ~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 271 (312)
+++++. +.........+++|+.+++.+.+.+...|.
T Consensus 274 ~Ls~N~-l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 274 NVSFNN-LCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp ECCSSE-EEEECCCSTTGGGSCGGGTCSSSEEESTTS
T ss_pred ECcCCc-ccccCCCCccccccChHHhcCCCCccCCCC
Confidence 999974 543333346788888888888877766554
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=2e-17 Score=144.68 Aligned_cols=238 Identities=16% Similarity=0.191 Sum_probs=172.3
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
++++++.+..+|..+. ++|++|++++| .+..+++..++++++|++|++++|.+.. ..+..+.
T Consensus 36 l~~~~~~l~~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~~~ 97 (330)
T 1xku_A 36 VQCSDLGLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISK---------------ISPGAFA 97 (330)
T ss_dssp EECTTSCCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCC---------------BCTTTTT
T ss_pred EEecCCCccccCccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCe---------------eCHHHhc
Confidence 5678888889986554 79999999999 8999888669999999999999998854 3356678
Q ss_pred CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcce--eeeecccc
Q 045137 82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEE--LKIDYTEI 159 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~~~~~ 159 (312)
.+++|+.|+++.+....++.- ...+|+.|++.++... .. ....+..+++|++|+++++ .+.. .....+.
T Consensus 98 ~l~~L~~L~Ls~n~l~~l~~~-----~~~~L~~L~l~~n~l~-~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~- 168 (330)
T 1xku_A 98 PLVKLERLYLSKNQLKELPEK-----MPKTLQELRVHENEIT-KV-RKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQ- 168 (330)
T ss_dssp TCTTCCEEECCSSCCSBCCSS-----CCTTCCEEECCSSCCC-BB-CHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGG-
T ss_pred CCCCCCEEECCCCcCCccChh-----hcccccEEECCCCccc-cc-CHhHhcCCccccEEECCCC-cCCccCcChhhcc-
Confidence 889999999987765433321 1138999999876432 22 1246888999999999976 3432 2222232
Q ss_pred ccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccc
Q 045137 160 VRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYL 239 (312)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 239 (312)
.+++|++|++++| .+..+|.. ..++|++|++++|.. ....+ .....+++|++|+++++
T Consensus 169 --------~l~~L~~L~l~~n-~l~~l~~~-~~~~L~~L~l~~n~l-~~~~~-----------~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 169 --------GMKKLSYIRIADT-NITTIPQG-LPPSLTELHLDGNKI-TKVDA-----------ASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp --------GCTTCCEEECCSS-CCCSCCSS-CCTTCSEEECTTSCC-CEECT-----------GGGTTCTTCCEEECCSS
T ss_pred --------CCCCcCEEECCCC-ccccCCcc-ccccCCEEECCCCcC-CccCH-----------HHhcCCCCCCEEECCCC
Confidence 7899999999999 77777632 238999999998864 33211 13457799999999986
Q ss_pred cccccccc-CCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhh
Q 045137 240 PELKSIFW-KPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN 291 (312)
Q Consensus 240 ~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~ 291 (312)
.++.+.. ....+++|+.|++++| +++.+|...... ..++.+....+-..
T Consensus 227 -~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l-~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 227 -SISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADH-KYIQVVYLHNNNIS 276 (330)
T ss_dssp -CCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTC-SSCCEEECCSSCCC
T ss_pred -cCceeChhhccCCCCCCEEECCCC-cCccCChhhccC-CCcCEEECCCCcCC
Confidence 4666554 3567899999999997 788888754433 66666654443333
No 28
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=1.1e-17 Score=139.73 Aligned_cols=211 Identities=17% Similarity=0.150 Sum_probs=143.6
Q ss_pred CCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccc-ccccccCCCCccccCCccchhhhccCC
Q 045137 5 SHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTG-GFIFYEAPEDSVLFGGGEVLIQELLGL 83 (312)
Q Consensus 5 s~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L 83 (312)
++..++.+|. +. .+|++|++++| .+..+|+..+.++++|++|++++|. +.. .....+..+
T Consensus 19 ~c~~l~~ip~-~~--~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~---------------i~~~~f~~l 79 (239)
T 2xwt_C 19 TCKDIQRIPS-LP--PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQ---------------LESHSFYNL 79 (239)
T ss_dssp EECSCSSCCC-CC--TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCE---------------ECTTTEESC
T ss_pred EccCccccCC-CC--CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcce---------------eCHhHcCCC
Confidence 3445677776 33 38888889888 7888887668888889999998886 643 223356777
Q ss_pred CCceEEEEEe-cChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccc---eEEeccCcCcceeeeecc
Q 045137 84 KYLEVLELTL-GSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLN---ELWIDNGIELEELKIDYT 157 (312)
Q Consensus 84 ~~L~~l~l~~-~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~---~L~l~~~~~l~~l~~~~~ 157 (312)
++|+.++++. +....++ .+..++ +|+.|++.++.-.. + +.+..+++|+ +|+++++..++.++...+
T Consensus 80 ~~L~~L~l~~~n~l~~i~~~~f~~l~----~L~~L~l~~n~l~~---l-p~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~ 151 (239)
T 2xwt_C 80 SKVTHIEIRNTRNLTYIDPDALKELP----LLKFLGIFNTGLKM---F-PDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151 (239)
T ss_dssp TTCCEEEEEEETTCCEECTTSEECCT----TCCEEEEEEECCCS---C-CCCTTCCBCCSEEEEEEESCTTCCEECTTTT
T ss_pred cCCcEEECCCCCCeeEcCHHHhCCCC----CCCEEeCCCCCCcc---c-cccccccccccccEEECCCCcchhhcCcccc
Confidence 8888888886 6554333 234455 78888888774322 2 2255666666 899987646666665444
Q ss_pred ccccccCCCCcccccc-eEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccC-CCcCee
Q 045137 158 EIVRKRREPFVFHSLH-LVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPF-ENLKSL 234 (312)
Q Consensus 158 ~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L 234 (312)
. .+++|+ .|++++| .+..+| .....++|++|++++|..+..+.. .....+ ++|++|
T Consensus 152 ~---------~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-----------~~~~~l~~~L~~L 210 (239)
T 2xwt_C 152 Q---------GLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-----------DAFGGVYSGPSLL 210 (239)
T ss_dssp T---------TTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECT-----------TTTTTCSBCCSEE
T ss_pred c---------chhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCH-----------HHhhccccCCcEE
Confidence 3 788999 9999888 677766 222338899999988854454422 123455 889999
Q ss_pred eccccccccccccCCcCCCCccEEEecCCCCC
Q 045137 235 DLSYLPELKSIFWKPLPFTHLKEMGVRACDQL 266 (312)
Q Consensus 235 ~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L 266 (312)
+++++ .++.++.. .+++|+.|++.++..|
T Consensus 211 ~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 211 DVSQT-SVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp ECTTC-CCCCCCCT--TCTTCSEEECTTC---
T ss_pred ECCCC-ccccCChh--HhccCceeeccCccCC
Confidence 99884 57766543 7889999999887654
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.73 E-value=1.5e-17 Score=148.89 Aligned_cols=245 Identities=17% Similarity=0.171 Sum_probs=160.6
Q ss_pred cccCCCCCccccHH-hhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIRELPEE-LKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
|+++++.+..+|.. ++.+++|++|++++| .+..+++..+..+++|++|++++|.+..++ ...+
T Consensus 50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------~~~~ 113 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLP---------------PHVF 113 (390)
T ss_dssp EEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCC---------------TTTT
T ss_pred EEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCC---------------HHHh
Confidence 67888889999854 799999999999999 888888766999999999999999886532 3345
Q ss_pred cCCCCceEEEEEecChhhHHH--HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137 81 LGLKYLEVLELTLGSYHALQI--LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE 158 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~~--l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 158 (312)
..+++|+.|+++.+....++. +..++ +|+.|+++++.... .. ...+..+++|++|+++++ .+..++.....
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~----~L~~L~L~~n~l~~-~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~ 186 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTP----KLTTLSMSNNNLER-IE-DDTFQATTSLQNLQLSSN-RLTHVDLSLIP 186 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCT----TCCEEECCSSCCCB-CC-TTTTSSCTTCCEEECCSS-CCSBCCGGGCT
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCC----CCcEEECCCCccCc-cC-hhhccCCCCCCEEECCCC-cCCcccccccc
Confidence 566667777776555443332 23444 66677666543221 11 134556666666666654 22222111110
Q ss_pred c-----------------------------ccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeecccccee
Q 045137 159 I-----------------------------VRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEI 209 (312)
Q Consensus 159 ~-----------------------------~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~ 209 (312)
. ....+.. .+++|+.|++++| .+.+.++++.+++|++|++++|......
T Consensus 187 ~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~l~~~~ 264 (390)
T 3o6n_A 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNELEKIM 264 (390)
T ss_dssp TCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCEEE
T ss_pred ccceeecccccccccCCCCcceEEECCCCeeeecccc-ccccccEEECCCC-CCcccHHHcCCCCccEEECCCCcCCCcC
Confidence 0 0001111 3457778888777 6666777888888899988887643322
Q ss_pred cccCccccCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeeh
Q 045137 210 ISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGE 286 (312)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~ 286 (312)
+ .....+++|++|+++++ .++.+......+++|+.|++++| +++.+|..... ..+++.+...
T Consensus 265 -~-----------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-l~~L~~L~L~ 326 (390)
T 3o6n_A 265 -Y-----------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQ-FDRLENLYLD 326 (390)
T ss_dssp -S-----------GGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHH-HTTCSEEECC
T ss_pred -h-----------hHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccc-cCcCCEEECC
Confidence 1 13456789999999985 67777766777999999999997 67777654322 2556665543
No 30
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=1.3e-17 Score=145.05 Aligned_cols=109 Identities=12% Similarity=0.005 Sum_probs=54.6
Q ss_pred hhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceec
Q 045137 131 AFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEII 210 (312)
Q Consensus 131 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~ 210 (312)
.+..+++|++|+++++ .+..+....+.. .+++|++|++++| .++.++....+++|++|++++|... .+.
T Consensus 139 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~--------~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~ 207 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLN-EIDTVNFAELAA--------SSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLA-FMG 207 (317)
T ss_dssp CTGGGSSEEEEECTTS-CCCEEEGGGGGG--------GTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCCC-EEC
T ss_pred hhhccCCCCEEECCCC-CCCcccHHHHhh--------ccCcCCEEECCCC-cCcccccccccccCCEEECCCCcCC-cch
Confidence 3444555666666544 344333222210 3456666666665 4555554444666666666655432 221
Q ss_pred ccCccccCCCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCC
Q 045137 211 SVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRAC 263 (312)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 263 (312)
+ ....+++|++|+++++ .++.++.....+++|+.|+++++
T Consensus 208 ~------------~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 208 P------------EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp G------------GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred h------------hhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCC
Confidence 1 1234556666666654 45555444445566666666554
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.72 E-value=2.7e-17 Score=150.02 Aligned_cols=239 Identities=18% Similarity=0.189 Sum_probs=151.3
Q ss_pred CcccCCCCCc-ccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccc-cccC--CCCcc------c
Q 045137 1 LLDISHTTIR-ELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFI-FYEA--PEDSV------L 69 (312)
Q Consensus 1 ~L~Ls~~~i~-~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~-~~~~--~~~~~------~ 69 (312)
+|+|++|.+. .+| ..|+.+++|++|++++| .+..+++..++++++|++|++++|.+.. .+.. +.... .
T Consensus 58 ~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 136 (455)
T 3v47_A 58 FLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136 (455)
T ss_dssp EEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEEC
T ss_pred EEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEEC
Confidence 3678888775 554 67888899999999888 6776644458888889999888888764 2222 22211 1
Q ss_pred cCC--ccchhhh-ccCCCCceEEEEEecChhhH--HHHhhcc------------------------------cccccceE
Q 045137 70 FGG--GEVLIQE-LLGLKYLEVLELTLGSYHAL--QILLSSN------------------------------KLKSCIRS 114 (312)
Q Consensus 70 ~~~--~~~~~~~-l~~L~~L~~l~l~~~~~~~~--~~l~~l~------------------------------~l~~~L~~ 114 (312)
.+- ....+.. +..+++|+.++++.+..... ..+..+. .-..+|+.
T Consensus 137 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~ 216 (455)
T 3v47_A 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216 (455)
T ss_dssp CSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEE
T ss_pred CCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeee
Confidence 111 1111222 67889999999876543211 1111110 00014555
Q ss_pred EEEeecCCCcc-------------------------------------------------------------ccchhhhc
Q 045137 115 LYLYLTGDKKS-------------------------------------------------------------IIDATAFT 133 (312)
Q Consensus 115 L~l~~~~~~~~-------------------------------------------------------------~~~~~~l~ 133 (312)
|+++++..... ...+..+.
T Consensus 217 L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 296 (455)
T 3v47_A 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296 (455)
T ss_dssp EECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT
T ss_pred EecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcc
Confidence 55554421100 00112355
Q ss_pred CccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecc
Q 045137 134 DLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIIS 211 (312)
Q Consensus 134 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~ 211 (312)
.+++|++|+++++ .+..+....+. .+++|++|++++| .+..++ .++.+++|++|++++|.. ....+
T Consensus 297 ~l~~L~~L~Ls~n-~l~~~~~~~~~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~ 364 (455)
T 3v47_A 297 HFTDLEQLTLAQN-EINKIDDNAFW---------GLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHI-RALGD 364 (455)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTT---------TCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCC-CEECT
T ss_pred cCCCCCEEECCCC-cccccChhHhc---------CcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcc-cccCh
Confidence 5667777777655 44444333333 7899999999999 677753 678899999999999865 33312
Q ss_pred cCccccCCCCCCCCccCCCcCeeeccccccccccccC-CcCCCCccEEEecCCC
Q 045137 212 VGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWK-PLPFTHLKEMGVRACD 264 (312)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 264 (312)
.....+++|++|+++++ .++.++.. ...+++|+.|++++++
T Consensus 365 -----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 365 -----------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp -----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -----------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 24467899999999995 67777654 4678999999999864
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.72 E-value=2e-17 Score=157.21 Aligned_cols=241 Identities=12% Similarity=0.072 Sum_probs=157.4
Q ss_pred CCCCccccHHhhCCCCCcEEecCCCCCccc------------------cCchhhh--ccccccEEEEecccccccccCCC
Q 045137 6 HTTIRELPEELKLLVNLKCLNLRWTGALIR------------------IPRGLIS--KFSRLRVLRMLGTGGFIFYEAPE 65 (312)
Q Consensus 6 ~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~------------------lp~~~i~--~l~~L~~L~l~~~~~~~~~~~~~ 65 (312)
+|.++.+|.+|+++++|++|+|++| .+.. +|.. ++ ++++|++|++++|.+..
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~------ 263 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLT------ 263 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCS------
T ss_pred cCCCccCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCc------
Confidence 5677789999999999999999999 6777 8987 88 99999999999998743
Q ss_pred CccccCCccchhhhccCCCCceEEEEEecC-hhh--H-HHHhhc------ccccccceEEEEeecCCCccccchh--hhc
Q 045137 66 DSVLFGGGEVLIQELLGLKYLEVLELTLGS-YHA--L-QILLSS------NKLKSCIRSLYLYLTGDKKSIIDAT--AFT 133 (312)
Q Consensus 66 ~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~-~~~--~-~~l~~l------~~l~~~L~~L~l~~~~~~~~~~~~~--~l~ 133 (312)
..+..+..+++|+.|+++.+. ... + ..+.++ + +|+.|++.++.-. .++. .++
T Consensus 264 ---------~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~----~L~~L~L~~n~l~---~ip~~~~l~ 327 (636)
T 4eco_A 264 ---------KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE----KIQIIYIGYNNLK---TFPVETSLQ 327 (636)
T ss_dssp ---------SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG----TCCEEECCSSCCS---SCCCHHHHT
T ss_pred ---------cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC----CCCEEECCCCcCC---ccCchhhhc
Confidence 455678888999999998775 432 3 345444 5 7889998876433 3434 688
Q ss_pred CccccceEEeccCcCcc-eeeeeccccccccCCCCcccccceEeecCCCCcccCC-ccCCCCC-CceEEEeeccccceec
Q 045137 134 DLNHLNELWIDNGIELE-ELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPN-LKSLSLFKCRAMEEII 210 (312)
Q Consensus 134 ~l~~L~~L~l~~~~~l~-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~-L~~L~l~~~~~~~~~~ 210 (312)
.+++|++|+++++ .+. .++ . +. .+++|+.|++++| .+..+| .++.+++ |++|++++|... .+.
T Consensus 328 ~l~~L~~L~L~~N-~l~g~ip-~-~~---------~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp 393 (636)
T 4eco_A 328 KMKKLGMLECLYN-QLEGKLP-A-FG---------SEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLK-YIP 393 (636)
T ss_dssp TCTTCCEEECCSC-CCEEECC-C-CE---------EEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSCCS-SCC
T ss_pred cCCCCCEEeCcCC-cCccchh-h-hC---------CCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCcCc-ccc
Confidence 8889999999876 444 444 2 22 5566666666666 455555 4555666 666666665432 211
Q ss_pred ccCcccc-------------CC-CCCCCCc-------cCCCcCeeeccccccccccccCC-cCCCCccEEEecCCCCCCC
Q 045137 211 SVGKIAE-------------NP-EMMGHIS-------PFENLKSLDLSYLPELKSIFWKP-LPFTHLKEMGVRACDQLRK 268 (312)
Q Consensus 211 ~~~~~~~-------------~~-~~~~~~~-------~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~i~~c~~L~~ 268 (312)
....... +. ....... .+++|++|+++++ .++.++... ..+++|+.|+++++ +++.
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~ 471 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTE 471 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSB
T ss_pred hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCC
Confidence 1000000 00 0000111 4457888888775 455554432 34788889998885 5667
Q ss_pred CCCCCccccc-------cceEeeeh
Q 045137 269 LPLDSNSAKE-------RKFVIRGE 286 (312)
Q Consensus 269 l~~~~~~~~~-------~l~~i~~~ 286 (312)
+|........ +++.+...
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECC
T ss_pred cCHHHhccccccccccCCccEEECc
Confidence 7776655422 56666543
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=4.1e-17 Score=154.16 Aligned_cols=94 Identities=18% Similarity=0.099 Sum_probs=64.3
Q ss_pred CcccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccc-cCCCCccc------cCC
Q 045137 1 LLDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY-EAPEDSVL------FGG 72 (312)
Q Consensus 1 ~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~-~~~~~~~~------~~~ 72 (312)
+|+|++|.++.+ |..|+++++|++|++++| .+..+++..++++++|++|++++|.+..++ ..+..... .+.
T Consensus 60 ~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 138 (606)
T 3vq2_A 60 WLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS
T ss_pred EEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC
Confidence 368888888877 467888899999999888 677775545888888888888888876655 22322211 111
Q ss_pred ---ccchhhhccCCCCceEEEEEecC
Q 045137 73 ---GEVLIQELLGLKYLEVLELTLGS 95 (312)
Q Consensus 73 ---~~~~~~~l~~L~~L~~l~l~~~~ 95 (312)
....+..+..+++|+.|+++.+.
T Consensus 139 ~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 139 FIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred cccceechHhHhhcCCCCEEEccCCc
Confidence 11234567777888888877554
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.72 E-value=3.4e-16 Score=145.18 Aligned_cols=113 Identities=18% Similarity=0.152 Sum_probs=83.0
Q ss_pred CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCcc------ccCC-
Q 045137 1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSV------LFGG- 72 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~------~~~~- 72 (312)
+|+|++|.+..++ ..|+.+++|++|++++| .+..+++..++++++|++|++++|.+..+|.. ... ..+-
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNA 101 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSC
T ss_pred EEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCc
Confidence 3788999998776 78999999999999999 78887555589999999999999998887765 111 1111
Q ss_pred --ccchhhhccCCCCceEEEEEecChhhHHHHhhcccccccc--eEEEEeecC
Q 045137 73 --GEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCI--RSLYLYLTG 121 (312)
Q Consensus 73 --~~~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L--~~L~l~~~~ 121 (312)
....+..++.+++|+.|+++.+.... ..+..++ .+ +.|++.++.
T Consensus 102 l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~----~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 102 FDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIA----HLNISKVLLVLGE 149 (520)
T ss_dssp CSSCCCCGGGGGCTTCCEEEEEESSCCG-GGGGGGT----TSCEEEEEEEECT
T ss_pred cccccchhhhccCCcceEEEecCcccch-hhccccc----cceeeEEEeeccc
Confidence 11234678888999999998876543 3445555 45 888887753
No 35
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=1.7e-17 Score=143.81 Aligned_cols=207 Identities=16% Similarity=0.171 Sum_probs=127.6
Q ss_pred CCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCC
Q 045137 5 SHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLK 84 (312)
Q Consensus 5 s~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 84 (312)
..+.+..+. .+..+++|++|++++| .+..+|. +..+++|++|++++|.+..+ ..+..++
T Consensus 27 ~~~~~~~~~-~~~~l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n~i~~~-----------------~~~~~l~ 85 (308)
T 1h6u_A 27 GKSNVTDTV-TQADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDNQITDL-----------------APLKNLT 85 (308)
T ss_dssp TCSSTTSEE-CHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCC-----------------GGGTTCC
T ss_pred CCCCcCcee-cHHHcCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCCcCCCC-----------------hhHccCC
Confidence 334444432 3456777777777777 6666663 77777777777777766431 1166677
Q ss_pred CceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccC
Q 045137 85 YLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRR 164 (312)
Q Consensus 85 ~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 164 (312)
+|+.|+++.+....++.+..++ +|+.|+++++.-.. + ..+..+++|++|+++++ .+..+.. +.
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~l~----~L~~L~l~~n~l~~---~-~~l~~l~~L~~L~l~~n-~l~~~~~--l~------ 148 (308)
T 1h6u_A 86 KITELELSGNPLKNVSAIAGLQ----SIKTLDLTSTQITD---V-TPLAGLSNLQVLYLDLN-QITNISP--LA------ 148 (308)
T ss_dssp SCCEEECCSCCCSCCGGGTTCT----TCCEEECTTSCCCC---C-GGGTTCTTCCEEECCSS-CCCCCGG--GG------
T ss_pred CCCEEEccCCcCCCchhhcCCC----CCCEEECCCCCCCC---c-hhhcCCCCCCEEECCCC-ccCcCcc--cc------
Confidence 7777777766555555555555 67777777653221 2 33667777777777765 4443322 22
Q ss_pred CCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccccc
Q 045137 165 EPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKS 244 (312)
Q Consensus 165 ~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 244 (312)
.+++|++|++++| .+.+++.+..+++|+.|++++|.. ..+. ....+++|++|+++++ .+..
T Consensus 149 ---~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l-~~~~-------------~l~~l~~L~~L~L~~N-~l~~ 209 (308)
T 1h6u_A 149 ---GLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNKI-SDIS-------------PLASLPNLIEVHLKNN-QISD 209 (308)
T ss_dssp ---GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCCG-------------GGGGCTTCCEEECTTS-CCCB
T ss_pred ---CCCCccEEEccCC-cCCCChhhcCCCCCCEEECCCCcc-CcCh-------------hhcCCCCCCEEEccCC-ccCc
Confidence 6677777877777 666666677777788887777653 2221 1345677777777775 4555
Q ss_pred cccCCcCCCCccEEEecCCCCCCCCC
Q 045137 245 IFWKPLPFTHLKEMGVRACDQLRKLP 270 (312)
Q Consensus 245 ~~~~~~~~~~L~~L~i~~c~~L~~l~ 270 (312)
+. ....+++|+.|++++++ ++..|
T Consensus 210 ~~-~l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 210 VS-PLANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp CG-GGTTCTTCCEEEEEEEE-EECCC
T ss_pred cc-cccCCCCCCEEEccCCe-eecCC
Confidence 44 24567777777777643 44433
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=7.1e-18 Score=159.36 Aligned_cols=239 Identities=18% Similarity=0.133 Sum_probs=143.5
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
|+++++.+..+| ++..+++|++|++++| .+..+|. + .+++|++|++++|.... + ..+.
T Consensus 290 L~l~~~~~~~l~-~l~~~~~L~~L~l~~n-~l~~lp~--~-~l~~L~~L~l~~n~~~~-~----------------~~~~ 347 (606)
T 3vq2_A 290 MSLAGVSIKYLE-DVPKHFKWQSLSIIRC-QLKQFPT--L-DLPFLKSLTLTMNKGSI-S----------------FKKV 347 (606)
T ss_dssp EEEESCCCCCCC-CCCTTCCCSEEEEESC-CCSSCCC--C-CCSSCCEEEEESCSSCE-E----------------CCCC
T ss_pred EEecCccchhhh-hccccccCCEEEcccc-cCccccc--C-CCCccceeeccCCcCcc-c----------------hhhc
Confidence 678888898888 8889999999999999 6788884 6 88999999999884432 0 0233
Q ss_pred CCCCceEEEEEecChhh----HHHHhhcccccccceEEEEeecC-----------------------CCccccchhhhcC
Q 045137 82 GLKYLEVLELTLGSYHA----LQILLSSNKLKSCIRSLYLYLTG-----------------------DKKSIIDATAFTD 134 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~----~~~l~~l~~l~~~L~~L~l~~~~-----------------------~~~~~~~~~~l~~ 134 (312)
.+++|+.++++.+.... ...+..++ +|+.|+++++. ...... ...+..
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~----~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~ 422 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTN----SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE-FSAFLS 422 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCS----CCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTT-TTTTTT
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCC----cccEeECCCCccccchhhccCCCCCCeeECCCCccCCccC-hhhhhc
Confidence 44455555554333221 12233333 44444444332 111110 023444
Q ss_pred ccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCccc--CC-ccCCCCCCceEEEeeccccceecc
Q 045137 135 LNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKD--ST-FLAFAPNLKSLSLFKCRAMEEIIS 211 (312)
Q Consensus 135 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~-~l~~l~~L~~L~l~~~~~~~~~~~ 211 (312)
+++|++|+++++ .+.......+. .+++|++|++++| .+.. +| .++.+++|++|++++|...... +
T Consensus 423 l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~ 490 (606)
T 3vq2_A 423 LEKLLYLDISYT-NTKIDFDGIFL---------GLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-W 490 (606)
T ss_dssp CTTCCEEECTTS-CCEECCTTTTT---------TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEEC-T
T ss_pred cccCCEEECcCC-CCCccchhhhc---------CCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCcCCccC-h
Confidence 555555555544 22222212221 5667777777776 4443 34 5666777777777766433221 1
Q ss_pred cCccccCCCCCCCCccCCCcCeeecccccccccc-ccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhh
Q 045137 212 VGKIAENPEMMGHISPFENLKSLDLSYLPELKSI-FWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWW 290 (312)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~ 290 (312)
.....+++|++|+++++ .+..+ +.....+++|+.|++++| +++.+|......+.+++.+....|.|
T Consensus 491 -----------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 491 -----------GVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp -----------TTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred -----------hhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 23467889999999987 45555 344677899999999997 58888887444434577776555555
Q ss_pred hh
Q 045137 291 NR 292 (312)
Q Consensus 291 ~~ 292 (312)
.+
T Consensus 558 ~c 559 (606)
T 3vq2_A 558 AC 559 (606)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.71 E-value=4.9e-17 Score=159.34 Aligned_cols=117 Identities=18% Similarity=0.227 Sum_probs=81.8
Q ss_pred CcccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccccc-ccCCCCcccc------CC
Q 045137 1 LLDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIF-YEAPEDSVLF------GG 72 (312)
Q Consensus 1 ~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~------~~ 72 (312)
+|+|++|.|+.+ |..|+++++|++|+|++|..+..++++.++++++|++|++++|.+..+ |..+...... ..
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence 378888988876 578889999999999988666777666688899999999988888765 3344333111 11
Q ss_pred --ccchhhh--ccCCCCceEEEEEecChhhH---HHHhhcccccccceEEEEeecC
Q 045137 73 --GEVLIQE--LLGLKYLEVLELTLGSYHAL---QILLSSNKLKSCIRSLYLYLTG 121 (312)
Q Consensus 73 --~~~~~~~--l~~L~~L~~l~l~~~~~~~~---~~l~~l~~l~~~L~~L~l~~~~ 121 (312)
....+.. +..+++|+.|+++.+..... ..+.+++ +|+.|+++++.
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~----~L~~L~Ls~N~ 159 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN----SLKSIDFSSNQ 159 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS----SCCEEEEESSC
T ss_pred CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC----CCCEEECCCCc
Confidence 1112222 77888899999987765432 3456667 88899988764
No 38
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=3.2e-17 Score=150.91 Aligned_cols=209 Identities=14% Similarity=0.073 Sum_probs=103.6
Q ss_pred cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
|+|++|.+..++ ..|+.+++|++|+|++| .+..+++ ++.+++|++|++++|.+..++
T Consensus 39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~------------------- 96 (487)
T 3oja_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQELL------------------- 96 (487)
T ss_dssp EECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSSEEEEEE-------------------
T ss_pred EEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCCcCCCCC-------------------
Confidence 445555554442 44555555555555555 3443333 445555555555555443211
Q ss_pred cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137 81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV 160 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 160 (312)
..++|+.|+++.+....+.. ..++ +|+.|+++++...... +..+..+++|++|+++++ .+.......+..
T Consensus 97 -~~~~L~~L~L~~N~l~~~~~-~~l~----~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~- 166 (487)
T 3oja_A 97 -VGPSIETLHAANNNISRVSC-SRGQ----GKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLN-EIDTVNFAELAA- 166 (487)
T ss_dssp -ECTTCCEEECCSSCCCCEEE-CCCS----SCEEEECCSSCCCSGG--GBCGGGGSSEEEEECTTS-CCCEEEGGGGGG-
T ss_pred -CCCCcCEEECcCCcCCCCCc-cccC----CCCEEECCCCCCCCCC--chhhcCCCCCCEEECCCC-CCCCcChHHHhh-
Confidence 12444555544333221110 1122 5566666554322111 124455666666666654 444433322210
Q ss_pred cccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccc
Q 045137 161 RKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLP 240 (312)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 240 (312)
.+++|+.|++++| .+..++....+++|++|++++|... .+.+ ....+++|+.|+++++
T Consensus 167 -------~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N~l~-~~~~------------~~~~l~~L~~L~Ls~N- 224 (487)
T 3oja_A 167 -------SSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLA-FMGP------------EFQSAAGVTWISLRNN- 224 (487)
T ss_dssp -------GTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCCC-EECG------------GGGGGTTCSEEECTTS-
T ss_pred -------hCCcccEEecCCC-ccccccccccCCCCCEEECCCCCCC-CCCH------------hHcCCCCccEEEecCC-
Confidence 3566777777766 5555555555667777777666432 2211 2345566777777664
Q ss_pred cccccccCCcCCCCccEEEecCCC
Q 045137 241 ELKSIFWKPLPFTHLKEMGVRACD 264 (312)
Q Consensus 241 ~l~~~~~~~~~~~~L~~L~i~~c~ 264 (312)
.+..++.....+++|+.|++++++
T Consensus 225 ~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 225 KLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CCCEECTTCCCCTTCCEEECTTCC
T ss_pred cCcccchhhccCCCCCEEEcCCCC
Confidence 455555555556667777766653
No 39
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=2.1e-17 Score=141.61 Aligned_cols=195 Identities=20% Similarity=0.238 Sum_probs=148.5
Q ss_pred CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccc-ccccccCCCCccccCCccchhh
Q 045137 1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTG-GFIFYEAPEDSVLFGGGEVLIQ 78 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (312)
+|++++|.++.+| ..|+.+++|++|++++| .+..+++..+.++++|++|++++|. +.. ....
T Consensus 36 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~---------------~~~~ 99 (285)
T 1ozn_A 36 RIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRS---------------VDPA 99 (285)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCC---------------CCTT
T ss_pred EEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccc---------------cCHH
Confidence 3789999999887 67999999999999999 8888865569999999999999997 543 3345
Q ss_pred hccCCCCceEEEEEecChhhH--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeec
Q 045137 79 ELLGLKYLEVLELTLGSYHAL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDY 156 (312)
Q Consensus 79 ~l~~L~~L~~l~l~~~~~~~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 156 (312)
.+..+++|+.|+++.+....+ ..+..++ +|+.|+++++... .... ..+..+++|++|+++++ .+..++...
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----~L~~L~l~~n~l~-~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~ 172 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLA----ALQYLYLQDNALQ-ALPD-DTFRDLGNLTHLFLHGN-RISSVPERA 172 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCT----TCCEEECCSSCCC-CCCT-TTTTTCTTCCEEECCSS-CCCEECTTT
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCc----CCCEEECCCCccc-ccCH-hHhccCCCccEEECCCC-cccccCHHH
Confidence 677888999999986655433 2345556 8999999876432 2221 45788999999999976 666665544
Q ss_pred cccccccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCee
Q 045137 157 TEIVRKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSL 234 (312)
Q Consensus 157 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 234 (312)
+. .+++|++|++++| .+..+ + .++.+++|++|++++|...... . .....+++|++|
T Consensus 173 ~~---------~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-----------~~~~~l~~L~~L 230 (285)
T 1ozn_A 173 FR---------GLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALP-T-----------EALAPLRALQYL 230 (285)
T ss_dssp TT---------TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCC-H-----------HHHTTCTTCCEE
T ss_pred hc---------CccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcCCcCC-H-----------HHcccCcccCEE
Confidence 43 7899999999999 66664 4 7888999999999998643321 1 123567899999
Q ss_pred eccccc
Q 045137 235 DLSYLP 240 (312)
Q Consensus 235 ~l~~~~ 240 (312)
++++++
T Consensus 231 ~l~~N~ 236 (285)
T 1ozn_A 231 RLNDNP 236 (285)
T ss_dssp ECCSSC
T ss_pred eccCCC
Confidence 998865
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=9.8e-17 Score=146.44 Aligned_cols=157 Identities=14% Similarity=0.078 Sum_probs=98.9
Q ss_pred CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
+|++++|.++.+| +++.+++|++|++++| .+..+| ++.+++|++|++++|.+..+ .+
T Consensus 46 ~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~l~~~------------------~~ 102 (457)
T 3bz5_A 46 SLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNKLTNL------------------DV 102 (457)
T ss_dssp EEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCC------------------CC
T ss_pred EEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCCCcee------------------ec
Confidence 3678888888887 6888888888888888 677774 77888888888888877531 15
Q ss_pred cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137 81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV 160 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 160 (312)
..+++|+.|+++.+....++ +..++ +|+.|+++++.-.. + .++.+++|++|+++++.....+. +.
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~-~~~l~----~L~~L~l~~N~l~~---l--~l~~l~~L~~L~l~~n~~~~~~~---~~-- 167 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD-VSQNP----LLTYLNCARNTLTE---I--DVSHNTQLTELDCHLNKKITKLD---VT-- 167 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC-CTTCT----TCCEEECTTSCCSC---C--CCTTCTTCCEEECTTCSCCCCCC---CT--
T ss_pred CCCCcCCEEECCCCcCCeec-CCCCC----cCCEEECCCCccce---e--ccccCCcCCEEECCCCCcccccc---cc--
Confidence 56677777777766544332 44444 67777766543221 1 24556667777776654333331 11
Q ss_pred cccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeecc
Q 045137 161 RKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCR 204 (312)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~ 204 (312)
.+++|+.|++++| .++.++ ++.+++|+.|++++|.
T Consensus 168 -------~l~~L~~L~ls~n-~l~~l~-l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 168 -------PQTQLTTLDCSFN-KITELD-VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp -------TCTTCCEEECCSS-CCCCCC-CTTCTTCCEEECCSSC
T ss_pred -------cCCcCCEEECCCC-ccceec-cccCCCCCEEECcCCc
Confidence 4566666666665 555554 5555666666665553
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.71 E-value=4.3e-16 Score=146.00 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=86.6
Q ss_pred cCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC----ccCCCCCCceEEEeeccccce
Q 045137 133 TDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST----FLAFAPNLKSLSLFKCRAMEE 208 (312)
Q Consensus 133 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~----~l~~l~~L~~L~l~~~~~~~~ 208 (312)
..+++|++|+++++ .+.......+. .+++|+.|++++| .++.++ .++.+++|++|++++|.....
T Consensus 350 ~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 350 PSPSSFTFLNFTQN-VFTDSVFQGCS---------TLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTCC---------SCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred cCCCCceEEECCCC-ccccchhhhhc---------ccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 56678888888876 33332222222 5667777777776 555443 355667777777766654321
Q ss_pred ecccCccccCCCC-----------CCCCccC-CCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccc
Q 045137 209 IISVGKIAENPEM-----------MGHISPF-ENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSA 276 (312)
Q Consensus 209 ~~~~~~~~~~~~~-----------~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~ 276 (312)
+.. .....++.+ ......+ ++|++|+++++ .++.++.....+++|+.|+++++ +++.+|......
T Consensus 419 ~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~ 495 (562)
T 3a79_B 419 AYD-RTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDR 495 (562)
T ss_dssp CSS-CCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTT
T ss_pred cCh-hhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhc
Confidence 111 000000000 0011223 68999999886 68888777678999999999985 788898874444
Q ss_pred cccceEeeehHhhhhh
Q 045137 277 KERKFVIRGEEDWWNR 292 (312)
Q Consensus 277 ~~~l~~i~~~~~~~~~ 292 (312)
..+++.+....|.|.+
T Consensus 496 l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CTTCCCEECCSCCBCC
T ss_pred CCCCCEEEecCCCcCC
Confidence 4667777644444443
No 42
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=5.8e-17 Score=153.97 Aligned_cols=141 Identities=12% Similarity=0.013 Sum_probs=84.8
Q ss_pred hcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC-ccC--CCCCCceEEEeeccccce
Q 045137 132 FTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLA--FAPNLKSLSLFKCRAMEE 208 (312)
Q Consensus 132 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~--~l~~L~~L~l~~~~~~~~ 208 (312)
+..+++|++|+++++ .+..++....... .+....+++|+.|++++| .+..+| .+. .+++|++|++++|....
T Consensus 453 ~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~--~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~- 527 (636)
T 4eco_A 453 FSTGSPLSSINLMGN-MLTEIPKNSLKDE--NENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSK- 527 (636)
T ss_dssp HHTTCCCSEEECCSS-CCSBCCSSSSEET--TEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred HccCCCCCEEECCCC-CCCCcCHHHhccc--cccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCCCC-
Confidence 344566667776654 3443333222100 000001238888888888 666777 454 78888888888876433
Q ss_pred ecccCccccCCCCCCCCccCCCcCeeeccc------cccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceE
Q 045137 209 IISVGKIAENPEMMGHISPFENLKSLDLSY------LPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFV 282 (312)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~ 282 (312)
+ + .....+++|++|++++ +.-...++.....+++|+.|++++| ++..+|.... ..++.
T Consensus 528 i-p-----------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~---~~L~~ 591 (636)
T 4eco_A 528 F-P-----------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKIT---PNISV 591 (636)
T ss_dssp C-C-----------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC---TTCCE
T ss_pred c-C-----------hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHhHh---CcCCE
Confidence 2 1 2445678889988854 3223344445667888999999886 4577877533 56777
Q ss_pred eeehHhhhhhc
Q 045137 283 IRGEEDWWNRL 293 (312)
Q Consensus 283 i~~~~~~~~~~ 293 (312)
+....+-+.++
T Consensus 592 L~Ls~N~l~~~ 602 (636)
T 4eco_A 592 LDIKDNPNISI 602 (636)
T ss_dssp EECCSCTTCEE
T ss_pred EECcCCCCccc
Confidence 66555545443
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.70 E-value=4.6e-17 Score=142.52 Aligned_cols=238 Identities=14% Similarity=0.150 Sum_probs=166.9
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
++++++.+..+|..+. ++|++|++++| .+..+++..+.++++|++|++++|.+.. .....+.
T Consensus 38 l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~~~ 99 (332)
T 2ft3_A 38 VQCSDLGLKAVPKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISK---------------IHEKAFS 99 (332)
T ss_dssp EECCSSCCSSCCSCCC--TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCE---------------ECGGGST
T ss_pred EECCCCCccccCCCCC--CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCc---------------cCHhHhh
Confidence 5678888888887663 78999999999 7888876668999999999999998754 3346678
Q ss_pred CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcce--eeeecccc
Q 045137 82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEE--LKIDYTEI 159 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~~~~~ 159 (312)
.+++|+.|+++.+....++... ..+|+.|++.++... .... ..+..+++|++|+++++ .++. .....+.
T Consensus 100 ~l~~L~~L~L~~n~l~~l~~~~-----~~~L~~L~l~~n~i~-~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~- 170 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLVEIPPNL-----PSSLVELRIHDNRIR-KVPK-GVFSGLRNMNCIEMGGN-PLENSGFEPGAFD- 170 (332)
T ss_dssp TCTTCCEEECCSSCCCSCCSSC-----CTTCCEEECCSSCCC-CCCS-GGGSSCSSCCEEECCSC-CCBGGGSCTTSSC-
T ss_pred CcCCCCEEECCCCcCCccCccc-----cccCCEEECCCCccC-ccCH-hHhCCCccCCEEECCCC-ccccCCCCccccc-
Confidence 8889999999877654333211 127899998876432 2221 45788899999999876 4432 1112221
Q ss_pred ccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccc
Q 045137 160 VRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYL 239 (312)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 239 (312)
.+ +|++|++++| .+..+|.. ..++|++|++++|...... + .....+++|++|+++++
T Consensus 171 --------~l-~L~~L~l~~n-~l~~l~~~-~~~~L~~L~l~~n~i~~~~-~-----------~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 171 --------GL-KLNYLRISEA-KLTGIPKD-LPETLNELHLDHNKIQAIE-L-----------EDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp --------SC-CCSCCBCCSS-BCSSCCSS-SCSSCSCCBCCSSCCCCCC-T-----------TSSTTCTTCSCCBCCSS
T ss_pred --------CC-ccCEEECcCC-CCCccCcc-ccCCCCEEECCCCcCCccC-H-----------HHhcCCCCCCEEECCCC
Confidence 34 8999999998 67777631 2379999999888643221 1 24467799999999986
Q ss_pred cccccccc-CCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhhh
Q 045137 240 PELKSIFW-KPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNR 292 (312)
Q Consensus 240 ~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~~ 292 (312)
.+..+.. ....+++|+.|+++++ +++.+|...... .+++.+....+...+
T Consensus 228 -~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l-~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 228 -QIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDL-KLLQVVYLHTNNITK 278 (332)
T ss_dssp -CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGC-TTCCEEECCSSCCCB
T ss_pred -cCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcC-ccCCEEECCCCCCCc
Confidence 5666554 3567999999999986 788888764333 667777655443333
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=3.2e-16 Score=145.36 Aligned_cols=144 Identities=17% Similarity=0.175 Sum_probs=85.5
Q ss_pred cCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccC---C-ccCCCCCCceEEEeeccccce
Q 045137 133 TDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDS---T-FLAFAPNLKSLSLFKCRAMEE 208 (312)
Q Consensus 133 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l---~-~l~~l~~L~~L~l~~~~~~~~ 208 (312)
..+++|++|+++++ .+.......+. .+++|+.|++++| .+..+ | .++.+++|++|++++|.....
T Consensus 321 ~~l~~L~~L~Ls~n-~l~~~~~~~~~---------~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 321 SKISPFLHLDFSNN-LLTDTVFENCG---------HLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTCC---------CCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred hhCCcccEEEeECC-ccChhhhhhhc---------cCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 56778888888876 33332222222 5677777777777 55542 2 366677777777776654331
Q ss_pred ecccCccccCCCCC-----------CCCccC-CCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccc
Q 045137 209 IISVGKIAENPEMM-----------GHISPF-ENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSA 276 (312)
Q Consensus 209 ~~~~~~~~~~~~~~-----------~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~ 276 (312)
+.. .....++.+. .....+ ++|++|+++++ .++.++.....+++|+.|++++| +++.+|......
T Consensus 390 l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~ 466 (520)
T 2z7x_B 390 EKK-GDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDR 466 (520)
T ss_dssp GGG-CSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred ccc-chhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhcc
Confidence 211 0000000000 001122 68999999886 57777766668999999999997 788898874444
Q ss_pred cccceEeeehHhhh
Q 045137 277 KERKFVIRGEEDWW 290 (312)
Q Consensus 277 ~~~l~~i~~~~~~~ 290 (312)
..+++.+....|.|
T Consensus 467 l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 467 LTSLQKIWLHTNPW 480 (520)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CCcccEEECcCCCC
Confidence 46677765443333
No 45
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.7e-17 Score=161.42 Aligned_cols=253 Identities=14% Similarity=0.076 Sum_probs=151.5
Q ss_pred CcccCCCCCcc------------------ccHHhh--CCCCCcEEecCCCCCccccCchhhhccccccEEEEeccc-ccc
Q 045137 1 LLDISHTTIRE------------------LPEELK--LLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTG-GFI 59 (312)
Q Consensus 1 ~L~Ls~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~-~~~ 59 (312)
+|+|++|.++. +|.+++ ++++|++|+|++|.....+|.. ++++++|++|++++|. +..
T Consensus 452 ~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg 530 (876)
T 4ecn_A 452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISA 530 (876)
T ss_dssp EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCH
T ss_pred EEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCccc
Confidence 37889999987 998887 9999999999999667778876 9999999999999997 642
Q ss_pred --cccCCCCccccCCccchhh-hccCCCCceEEEEEecChhhHH---HHhhcccccccceEEEEeecCCCccccchhhhc
Q 045137 60 --FYEAPEDSVLFGGGEVLIQ-ELLGLKYLEVLELTLGSYHALQ---ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFT 133 (312)
Q Consensus 60 --~~~~~~~~~~~~~~~~~~~-~l~~L~~L~~l~l~~~~~~~~~---~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~ 133 (312)
+|.++ ..+. .+..+++|+.|+++.+....++ .+.+++ +|+.|+++++... .+ +.+.
T Consensus 531 ~~iP~~i----------~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~----~L~~L~Ls~N~l~---~l-p~~~ 592 (876)
T 4ecn_A 531 AQLKADW----------TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV----KLGLLDCVHNKVR---HL-EAFG 592 (876)
T ss_dssp HHHHHHH----------HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCT----TCCEEECTTSCCC---BC-CCCC
T ss_pred ccchHHH----------HhhhhcccccCCccEEEeeCCcCCccCChhhhhcCC----CCCEEECCCCCcc---cc-hhhc
Confidence 33211 1111 2334557788887766554443 355555 6777777765432 33 2667
Q ss_pred CccccceEEeccCcCcceeeeeccccccccCCCCcccc-cceEeecCCCCcccCC-ccCCC--CCCceEEEeecccccee
Q 045137 134 DLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHS-LHLVTIYSCHKLKDST-FLAFA--PNLKSLSLFKCRAMEEI 209 (312)
Q Consensus 134 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~l~-~l~~l--~~L~~L~l~~~~~~~~~ 209 (312)
.+++|+.|+++++ .+..++.... .+++ |+.|++++| .+..+| .+..+ ++|+.|++++|.....+
T Consensus 593 ~L~~L~~L~Ls~N-~l~~lp~~l~----------~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 593 TNVKLTDLKLDYN-QIEEIPEDFC----------AFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp TTSEESEEECCSS-CCSCCCTTSC----------EECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred CCCcceEEECcCC-ccccchHHHh----------hccccCCEEECcCC-CCCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence 7777788887765 3443332222 5566 777777777 455665 33333 33777777666543221
Q ss_pred cccC-cc---------------ccCCCCCCC-CccCCCcCeeeccccccccccccCCcC--------CCCccEEEecCCC
Q 045137 210 ISVG-KI---------------AENPEMMGH-ISPFENLKSLDLSYLPELKSIFWKPLP--------FTHLKEMGVRACD 264 (312)
Q Consensus 210 ~~~~-~~---------------~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~--------~~~L~~L~i~~c~ 264 (312)
.... .. ..+..+... ...+++|+.|+++++ .+..++..... +++|+.|++++|
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N- 738 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN- 738 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-
T ss_pred ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-
Confidence 0000 00 000000001 124567777777775 45555443222 227888888876
Q ss_pred CCCCCCCCCc-cccccceEeeeh
Q 045137 265 QLRKLPLDSN-SAKERKFVIRGE 286 (312)
Q Consensus 265 ~L~~l~~~~~-~~~~~l~~i~~~ 286 (312)
+++.+|.... ...++++.+...
T Consensus 739 ~L~~lp~~l~~~~l~~L~~L~Ls 761 (876)
T 4ecn_A 739 KLTSLSDDFRATTLPYLSNMDVS 761 (876)
T ss_dssp CCCCCCGGGSTTTCTTCCEEECC
T ss_pred CCccchHHhhhccCCCcCEEEeC
Confidence 6767775443 122566666543
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.70 E-value=6.2e-17 Score=151.08 Aligned_cols=115 Identities=16% Similarity=0.141 Sum_probs=64.5
Q ss_pred cccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccC-CCCcc------ccCC-
Q 045137 2 LDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEA-PEDSV------LFGG- 72 (312)
Q Consensus 2 L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~-~~~~~------~~~~- 72 (312)
|+|++|.++.+ |..|+.+++|++|++++| .+..+++..++++++|++|++++|.+..++.+ +.... ..+-
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence 56777777655 356777777777777777 66666554567777777777777766554432 21110 0000
Q ss_pred --ccchhhhccCCCCceEEEEEecC-hhhH--HHHhhcccccccceEEEEeecC
Q 045137 73 --GEVLIQELLGLKYLEVLELTLGS-YHAL--QILLSSNKLKSCIRSLYLYLTG 121 (312)
Q Consensus 73 --~~~~~~~l~~L~~L~~l~l~~~~-~~~~--~~l~~l~~l~~~L~~L~l~~~~ 121 (312)
....+..+..+++|+.|+++.+. ...+ ..+..++ +|+.|++.++.
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~----~L~~L~L~~n~ 159 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT----SLNELEIKALS 159 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC----EEEEEEEEETT
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhccc----ccCeeeccCCc
Confidence 11122345667777777777654 2222 2344444 66777776653
No 47
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=1.7e-16 Score=132.45 Aligned_cols=198 Identities=15% Similarity=0.055 Sum_probs=140.3
Q ss_pred CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEec-ccccccccCCCCccccCCccchhh
Q 045137 1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLG-TGGFIFYEAPEDSVLFGGGEVLIQ 78 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (312)
+|++++|.++.+| ..|+.+++|++|++++|..+..+++..+.++++|++|++++ |.+.. ....
T Consensus 35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~---------------i~~~ 99 (239)
T 2xwt_C 35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY---------------IDPD 99 (239)
T ss_dssp EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE---------------ECTT
T ss_pred EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE---------------cCHH
Confidence 3688899999887 47889999999999999338888876688999999999988 77754 2234
Q ss_pred hccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccc-eEEeccCcCcceeeeecc
Q 045137 79 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLN-ELWIDNGIELEELKIDYT 157 (312)
Q Consensus 79 ~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~l~~l~~~~~ 157 (312)
.+..+++|+.++++.+....++.+..+..+. .++.|+++++........ ..+..+++|+ +|+++++ .++.++...+
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~-~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n-~l~~i~~~~~ 176 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTD-IFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNN-GFTSVQGYAF 176 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCCCTTCCBCC-SEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSC-CCCEECTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccccccccccc-cccEEECCCCcchhhcCc-ccccchhcceeEEEcCCC-CCcccCHhhc
Confidence 5677888999998877665555555555222 133888887623333322 4577888899 9999865 5665554444
Q ss_pred ccccccCCCCcccccceEeecCCCCcccCC--ccCCC-CCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCee
Q 045137 158 EIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFA-PNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSL 234 (312)
Q Consensus 158 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 234 (312)
..++|++|++++|..++.++ .+..+ ++|+.|+++++.. ..+ ....|++|+.|
T Consensus 177 ----------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l--------------~~~~~~~L~~L 231 (239)
T 2xwt_C 177 ----------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TAL--------------PSKGLEHLKEL 231 (239)
T ss_dssp ----------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCC--------------CCTTCTTCSEE
T ss_pred ----------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-ccC--------------ChhHhccCcee
Confidence 33789999999985577765 56778 8999999988754 332 12367889998
Q ss_pred ecccccc
Q 045137 235 DLSYLPE 241 (312)
Q Consensus 235 ~l~~~~~ 241 (312)
.+.++..
T Consensus 232 ~l~~~~~ 238 (239)
T 2xwt_C 232 IARNTWT 238 (239)
T ss_dssp ECTTC--
T ss_pred eccCccC
Confidence 8877643
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=4.7e-17 Score=143.69 Aligned_cols=223 Identities=15% Similarity=0.174 Sum_probs=163.4
Q ss_pred CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
+|++++|.++.++ ..|+.+++|++|++++| .+..+|..+++++++|++|++++|.+..++. ...
T Consensus 80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--------------~~~ 144 (353)
T 2z80_A 80 ALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE--------------TSL 144 (353)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCS--------------SCS
T ss_pred EEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCc--------------hhh
Confidence 3789999999875 77999999999999999 8999998878999999999999998864321 135
Q ss_pred ccCCCCceEEEEEecC-hhhH--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeec
Q 045137 80 LLGLKYLEVLELTLGS-YHAL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDY 156 (312)
Q Consensus 80 l~~L~~L~~l~l~~~~-~~~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 156 (312)
+..+++|+.++++.+. ...+ ..+..++ +|+.|+++++..... .+..+..+++|++|+++++ .+..++...
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~----~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~~~~ 217 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLT----FLEELEIDASDLQSY--EPKSLKSIQNVSHLILHMK-QHILLLEIF 217 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCC----EEEEEEEEETTCCEE--CTTTTTTCSEEEEEEEECS-CSTTHHHHH
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCC----CCCEEECCCCCcCcc--CHHHHhccccCCeecCCCC-ccccchhhh
Confidence 6778899999998763 3222 2455566 899999998753322 2357888999999999976 455544333
Q ss_pred cccccccCCCCcccccceEeecCCCCcccCC-----ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCc
Q 045137 157 TEIVRKRREPFVFHSLHLVTIYSCHKLKDST-----FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENL 231 (312)
Q Consensus 157 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 231 (312)
.. .+++|+.|++++| .+..++ .....+.++.+++.++......+. .+......+++|
T Consensus 218 ~~---------~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~--------~l~~~l~~l~~L 279 (353)
T 2z80_A 218 VD---------VTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF--------QVMKLLNQISGL 279 (353)
T ss_dssp HH---------HTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHH--------HHHHHHHTCTTC
T ss_pred hh---------hcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchh--------hhHHHHhcccCC
Confidence 32 5799999999999 666543 233467888888887754322110 011134568999
Q ss_pred CeeeccccccccccccCC-cCCCCccEEEecCCC
Q 045137 232 KSLDLSYLPELKSIFWKP-LPFTHLKEMGVRACD 264 (312)
Q Consensus 232 ~~L~l~~~~~l~~~~~~~-~~~~~L~~L~i~~c~ 264 (312)
++|+++++ .++.++... ..+++|+.|++++++
T Consensus 280 ~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 280 LELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 99999996 677777664 678999999999874
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=5.1e-17 Score=138.52 Aligned_cols=209 Identities=20% Similarity=0.135 Sum_probs=127.2
Q ss_pred CCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCC
Q 045137 5 SHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLK 84 (312)
Q Consensus 5 s~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 84 (312)
++..+..+|..+. ++|++|++++| .+..++...+.++++|++|++++|.+.. .....+..++
T Consensus 15 ~~~~l~~ip~~l~--~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~ 76 (276)
T 2z62_A 15 MELNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQT---------------IEDGAYQSLS 76 (276)
T ss_dssp TTSCCSSCCSSSC--TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCE---------------ECTTTTTTCT
T ss_pred cCCCccccCCCCC--CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCc---------------cCHHHccCCc
Confidence 3445566665443 46777888777 6777766557777788888887776643 2233456667
Q ss_pred CceEEEEEecChhhH--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceee-eecccccc
Q 045137 85 YLEVLELTLGSYHAL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELK-IDYTEIVR 161 (312)
Q Consensus 85 ~L~~l~l~~~~~~~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~ 161 (312)
+|+.|+++.+..... ..+..++ +|+.|++.++....... ..+..+++|++|+++++ .+..+. ...+.
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~----~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~--- 146 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALGAFSGLS----SLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHN-LIQSFKLPEYFS--- 146 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCT----TCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSS-CCCCCCCCGGGG---
T ss_pred CCCEEECCCCccCccChhhhcCCc----cccEEECCCCCccccCc--hhcccCCCCCEEECcCC-ccceecCchhhc---
Confidence 777777765543322 2344445 67777777653322111 24667788888888865 444432 22232
Q ss_pred ccCCCCcccccceEeecCCCCcccCC--ccCCCCCCc----eEEEeeccccceecccCccccCCCCCCCCccCCCcCeee
Q 045137 162 KRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLK----SLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLD 235 (312)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 235 (312)
.+++|++|++++| .+..++ .+..+++|+ +|+++++... .+.. ......+|++|+
T Consensus 147 ------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~-~~~~------------~~~~~~~L~~L~ 206 (276)
T 2z62_A 147 ------NLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP------------GAFKEIRLKELA 206 (276)
T ss_dssp ------GCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEECCSSCCC-EECT------------TSSCSCCEEEEE
T ss_pred ------cCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeecCCCccc-ccCc------------cccCCCcccEEE
Confidence 6788888888888 666644 444555555 6777776532 2211 112234788888
Q ss_pred ccccccccccccC-CcCCCCccEEEecC
Q 045137 236 LSYLPELKSIFWK-PLPFTHLKEMGVRA 262 (312)
Q Consensus 236 l~~~~~l~~~~~~-~~~~~~L~~L~i~~ 262 (312)
++++ .++.+... ...+++|+.|++++
T Consensus 207 L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 207 LDTN-QLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CCSS-CCSCCCTTTTTTCCSCCEEECCS
T ss_pred CCCC-ceeecCHhHhcccccccEEEccC
Confidence 8875 46666654 35688888888875
No 50
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=8.9e-17 Score=136.63 Aligned_cols=77 Identities=22% Similarity=0.284 Sum_probs=57.4
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
++++++.++.+|..+. ++|++|++++| .+..+++..+.++++|++|++++|.+..++ ...+.
T Consensus 21 l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~---------------~~~~~ 82 (270)
T 2o6q_A 21 VDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLP---------------AGIFK 82 (270)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCC---------------TTTTS
T ss_pred EEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeC---------------hhhhc
Confidence 5778888888886554 68899999999 788888766889999999999988875422 23345
Q ss_pred CCCCceEEEEEecCh
Q 045137 82 GLKYLEVLELTLGSY 96 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~ 96 (312)
.+++|+.|+++.+..
T Consensus 83 ~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 83 ELKNLETLWVTDNKL 97 (270)
T ss_dssp SCTTCCEEECCSSCC
T ss_pred CCCCCCEEECCCCcC
Confidence 667777777765543
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=3.9e-17 Score=142.15 Aligned_cols=231 Identities=15% Similarity=0.100 Sum_probs=167.8
Q ss_pred ccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 3 DISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 3 ~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
+++.+.+...+ ..+..+++|++|++++| .+..+++..+.++++|++|++++|.+... ..+.
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~ 77 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYET-----------------LDLE 77 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEE-----------------EEET
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcc-----------------hhhh
Confidence 45666666554 45567889999999999 88888876699999999999999988531 1277
Q ss_pred CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137 82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR 161 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 161 (312)
.+++|+.|+++.+....++ ..+ .|+.|+++++...... ...+++|++|+++++ .+..+....+.
T Consensus 78 ~l~~L~~L~Ls~n~l~~l~---~~~----~L~~L~l~~n~l~~~~-----~~~~~~L~~L~l~~N-~l~~~~~~~~~--- 141 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQELL---VGP----SIETLHAANNNISRVS-----CSRGQGKKNIYLANN-KITMLRDLDEG--- 141 (317)
T ss_dssp TCTTCCEEECCSSEEEEEE---ECT----TCCEEECCSSCCSEEE-----ECCCSSCEEEECCSS-CCCSGGGBCTG---
T ss_pred hcCCCCEEECcCCcccccc---CCC----CcCEEECCCCccCCcC-----ccccCCCCEEECCCC-CCCCccchhhh---
Confidence 8899999999877553322 223 7899998876432221 223678999999976 55554433333
Q ss_pred ccCCCCcccccceEeecCCCCcccCC--cc-CCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccc
Q 045137 162 KRREPFVFHSLHLVTIYSCHKLKDST--FL-AFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSY 238 (312)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~l~~l~--~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 238 (312)
.+++|++|++++| .+..++ .+ ..+++|++|++++|...... ....+++|++|++++
T Consensus 142 ------~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 142 ------CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------------GQVVFAKLKTLDLSS 200 (317)
T ss_dssp ------GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------------CCCCCTTCCEEECCS
T ss_pred ------ccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCcccc--------------cccccccCCEEECCC
Confidence 7899999999999 676643 34 46899999999998743321 223489999999999
Q ss_pred cccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhh
Q 045137 239 LPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN 291 (312)
Q Consensus 239 ~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~ 291 (312)
+ .++.++.....+++|+.|+++++ +++.+|...... .+++.+....+-|.
T Consensus 201 N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l-~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 201 N-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFS-QNLEHFDLRGNGFH 250 (317)
T ss_dssp S-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCC-TTCCEEECTTCCCB
T ss_pred C-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcC-CCCCEEEccCCCcc
Confidence 6 67777766778999999999996 788888654333 67777765444443
No 52
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=2e-16 Score=139.53 Aligned_cols=225 Identities=17% Similarity=0.139 Sum_probs=133.7
Q ss_pred cCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccc-cccCC-CCcccc---------CC
Q 045137 4 ISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFI-FYEAP-EDSVLF---------GG 72 (312)
Q Consensus 4 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~-~~~~~-~~~~~~---------~~ 72 (312)
-++++++++|.++ .+++++|+|++| .++.+|+++|.++++|++|++++|.+.+ ++.+. ...... ..
T Consensus 16 C~~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 16 CQESKVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EESTTCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred ecCCCCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 3556677777655 357778888877 7777777667778888888887777643 33221 111000 00
Q ss_pred ccchhhhccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCc-cccceEEeccCcCcce
Q 045137 73 GEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDL-NHLNELWIDNGIELEE 151 (312)
Q Consensus 73 ~~~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~ 151 (312)
.......+..+++|+.++++.+....++........ .+..+.+.+......... ..+..+ ..++.|+++++ .++.
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~l~~l~l~~~~~i~~l~~-~~f~~~~~~l~~L~L~~N-~i~~ 168 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL--QKVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKN-GIQE 168 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS--SCEEEEEESCTTCCEECT-TSSTTSBSSCEEEECCSS-CCCE
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccc--hhhhhhhccccccccccc-cchhhcchhhhhhccccc-cccC
Confidence 112234456677777777776655443322222211 455566655433333322 233333 35667777754 5665
Q ss_pred eeeeccccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCC
Q 045137 152 LKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFE 229 (312)
Q Consensus 152 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (312)
++...+ ...+|+.+++.++..++.+| .++.+++|+.|++++|. ++.+ ....|.
T Consensus 169 i~~~~f----------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~l--------------p~~~~~ 223 (350)
T 4ay9_X 169 IHNSAF----------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSL--------------PSYGLE 223 (350)
T ss_dssp ECTTSS----------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCC--------------CSSSCT
T ss_pred CChhhc----------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCcc--------------Chhhhc
Confidence 554433 45678888887765777776 46778888888888775 3333 224567
Q ss_pred CcCeeeccccccccccccCCcCCCCccEEEec
Q 045137 230 NLKSLDLSYLPELKSIFWKPLPFTHLKEMGVR 261 (312)
Q Consensus 230 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~ 261 (312)
+|++|.+.++.+++.++ ....+++|+.+++.
T Consensus 224 ~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 224 NLKKLRARSTYNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp TCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred cchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence 77888777777777765 34567788887765
No 53
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=1.5e-16 Score=137.90 Aligned_cols=187 Identities=20% Similarity=0.242 Sum_probs=150.6
Q ss_pred CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
+|+++++.+..+| +++.+++|++|++++| .+..+++ +..+++|++|++++|.+.. +..+
T Consensus 45 ~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~-----------------~~~~ 103 (308)
T 1h6u_A 45 TLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKN-----------------VSAI 103 (308)
T ss_dssp EEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSC-----------------CGGG
T ss_pred EEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCC-----------------chhh
Confidence 3788999999997 7999999999999999 8888887 9999999999999998753 3467
Q ss_pred cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137 81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV 160 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 160 (312)
..+++|+.|+++.+....++.+..++ +|+.|+++++.... + ..+..+++|++|+++++ .+..+.. +.
T Consensus 104 ~~l~~L~~L~l~~n~l~~~~~l~~l~----~L~~L~l~~n~l~~---~-~~l~~l~~L~~L~l~~n-~l~~~~~--l~-- 170 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITDVTPLAGLS----NLQVLYLDLNQITN---I-SPLAGLTNLQYLSIGNA-QVSDLTP--LA-- 170 (308)
T ss_dssp TTCTTCCEEECTTSCCCCCGGGTTCT----TCCEEECCSSCCCC---C-GGGGGCTTCCEEECCSS-CCCCCGG--GT--
T ss_pred cCCCCCCEEECCCCCCCCchhhcCCC----CCCEEECCCCccCc---C-ccccCCCCccEEEccCC-cCCCChh--hc--
Confidence 88899999999887766666666777 89999998864322 2 23778899999999987 5554432 32
Q ss_pred cccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccc
Q 045137 161 RKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLP 240 (312)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 240 (312)
.+++|+.|++++| .+..++.+..+++|++|++++|...... ....+++|++|++++++
T Consensus 171 -------~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~~--------------~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 171 -------NLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQISDVS--------------PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -------TCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSCCCBCG--------------GGTTCTTCCEEEEEEEE
T ss_pred -------CCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCCccCccc--------------cccCCCCCCEEEccCCe
Confidence 7899999999999 7888888899999999999998643321 23678999999999864
Q ss_pred cccc
Q 045137 241 ELKS 244 (312)
Q Consensus 241 ~l~~ 244 (312)
+..
T Consensus 229 -i~~ 231 (308)
T 1h6u_A 229 -ITN 231 (308)
T ss_dssp -EEC
T ss_pred -eec
Confidence 443
No 54
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.68 E-value=1.5e-16 Score=154.33 Aligned_cols=252 Identities=15% Similarity=0.017 Sum_probs=156.7
Q ss_pred cccCCCCCc-cccHHhhCCCCCcEEecCCCCCcc-ccCchhhhccccccEEEEeccccc-ccccCCCCcc------ccC-
Q 045137 2 LDISHTTIR-ELPEELKLLVNLKCLNLRWTGALI-RIPRGLISKFSRLRVLRMLGTGGF-IFYEAPEDSV------LFG- 71 (312)
Q Consensus 2 L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~-~lp~~~i~~l~~L~~L~l~~~~~~-~~~~~~~~~~------~~~- 71 (312)
|++++|.+. .+|..++.+++|++|++++| .+. .+|.. ++++++|++|++.+|.+. .+|..+.... ...
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFN-YLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCC-cccCcccHH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 566777766 56777777777777777777 444 34544 777777777777777665 2232222110 000
Q ss_pred -CccchhhhccCCCCceEEEEEecChh-h-HHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcC
Q 045137 72 -GGEVLIQELLGLKYLEVLELTLGSYH-A-LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIE 148 (312)
Q Consensus 72 -~~~~~~~~l~~L~~L~~l~l~~~~~~-~-~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 148 (312)
.....+..+..+++|+.++++.+... . ...+..++ +|+.|+++++... ..++..+..+++|+.|+++++.-
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~----~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE----NLAILKLSNNSFS--GNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT----TCCEEECCSSCCE--EECCGGGGGCTTCCEEECCSSEE
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC----CCCEEECCCCccc--CcCCHHHcCCCCCCEEECCCCcc
Confidence 02234455677778888888766543 2 22455555 7888888876432 22335777888888888887632
Q ss_pred cceeeeeccccc------------------------------------------------------------cccCCCCc
Q 045137 149 LEELKIDYTEIV------------------------------------------------------------RKRREPFV 168 (312)
Q Consensus 149 l~~l~~~~~~~~------------------------------------------------------------~~~~~~~~ 168 (312)
...++....... ........
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 222221111000 00011114
Q ss_pred ccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccccccccc
Q 045137 169 FHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFW 247 (312)
Q Consensus 169 ~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 247 (312)
+++|+.|++++|.....+| .++.+++|+.|++++|.....+ + ...+.+++|+.|+++++.--..++.
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p-----------~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI-P-----------DEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC-C-----------GGGGGCTTCCEEECCSSCCEECCCG
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC-C-----------hHHhCCCCCCEEECCCCcccCcCCh
Confidence 6789999999993333577 7888999999999988754443 2 2557789999999999754445666
Q ss_pred CCcCCCCccEEEecCCCCCCCCCCCC
Q 045137 248 KPLPFTHLKEMGVRACDQLRKLPLDS 273 (312)
Q Consensus 248 ~~~~~~~L~~L~i~~c~~L~~l~~~~ 273 (312)
....++.|+.|+++++.--..+|...
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred HHhCCCCCCEEECcCCcccccCCCch
Confidence 67789999999999874333466543
No 55
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=2.8e-16 Score=152.96 Aligned_cols=248 Identities=10% Similarity=0.054 Sum_probs=130.6
Q ss_pred cccCCCCCccccH--HhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 2 LDISHTTIRELPE--ELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 2 L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
|+|++|.+..+|. .|+++++|++|+|++| .+..+| . ++++++|++|++++|.+..+| ..
T Consensus 553 L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L~~L~Ls~N~l~~lp----------------~~ 613 (876)
T 4ecn_A 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKLTDLKLDYNQIEEIP----------------ED 613 (876)
T ss_dssp EECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEESEEECCSSCCSCCC----------------TT
T ss_pred EEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCCcceEEECcCCccccch----------------HH
Confidence 4555555555555 5555555555555555 444555 2 555555555555555554333 23
Q ss_pred ccCCCC-ceEEEEEecChhhHHHHh-hcc--------------------------c-ccccceEEEEeecCCCccccch-
Q 045137 80 LLGLKY-LEVLELTLGSYHALQILL-SSN--------------------------K-LKSCIRSLYLYLTGDKKSIIDA- 129 (312)
Q Consensus 80 l~~L~~-L~~l~l~~~~~~~~~~l~-~l~--------------------------~-l~~~L~~L~l~~~~~~~~~~~~- 129 (312)
+..+.+ |+.|+++.+....++... ... . -..+|+.|+++++... .++
T Consensus 614 l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~---~lp~ 690 (876)
T 4ecn_A 614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ---KFPT 690 (876)
T ss_dssp SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC---SCCH
T ss_pred HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC---ccCH
Confidence 444444 555555544332222110 000 0 0013445555443221 111
Q ss_pred hhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC-ccC--CCCCCceEEEeecccc
Q 045137 130 TAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLA--FAPNLKSLSLFKCRAM 206 (312)
Q Consensus 130 ~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~--~l~~L~~L~l~~~~~~ 206 (312)
..+..+++|+.|+++++ .+..++...... ..+....+++|+.|++++| .+..+| .+. .+++|+.|++++|...
T Consensus 691 ~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~--~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~ 766 (876)
T 4ecn_A 691 ELFATGSPISTIILSNN-LMTSIPENSLKP--KDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFS 766 (876)
T ss_dssp HHHHTTCCCSEEECCSC-CCSCCCTTSSSC--TTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred HHHccCCCCCEEECCCC-cCCccChHHhcc--ccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCCC
Confidence 22335566677777654 444333222110 0000002348888888888 677777 554 7888888888887543
Q ss_pred ceecccCccccCCCCCCCCccCCCcCeeeccccc------cccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccc
Q 045137 207 EEIISVGKIAENPEMMGHISPFENLKSLDLSYLP------ELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERK 280 (312)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l 280 (312)
. + + .....+++|+.|++++++ -...++.....+++|+.|++++| ++..+|.... .++
T Consensus 767 ~-l-p-----------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l~---~~L 829 (876)
T 4ecn_A 767 S-F-P-----------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLT---PQL 829 (876)
T ss_dssp S-C-C-----------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC---SSS
T ss_pred c-c-c-----------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHhhc---CCC
Confidence 3 2 1 244577888888887632 23334445667888999999887 4577887643 356
Q ss_pred eEeeehHhhhhh
Q 045137 281 FVIRGEEDWWNR 292 (312)
Q Consensus 281 ~~i~~~~~~~~~ 292 (312)
+.+....|-+..
T Consensus 830 ~~LdLs~N~l~~ 841 (876)
T 4ecn_A 830 YILDIADNPNIS 841 (876)
T ss_dssp CEEECCSCTTCE
T ss_pred CEEECCCCCCCc
Confidence 666544444433
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=148.69 Aligned_cols=248 Identities=16% Similarity=0.135 Sum_probs=150.6
Q ss_pred cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCC-c---cccCCccchhhhccCCCCc
Q 045137 11 ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPED-S---VLFGGGEVLIQELLGLKYL 86 (312)
Q Consensus 11 ~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~-~---~~~~~~~~~~~~l~~L~~L 86 (312)
.+|..++.+++|++|++++| .+..+|.. +..+ +|++|++.+|.+..+|..... + ...+...........+++|
T Consensus 273 ~~~~~~~~l~~L~~L~l~~~-~l~~l~~~-~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L 349 (570)
T 2z63_A 273 DIIDLFNCLTNVSSFSLVSV-TIERVKDF-SYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349 (570)
T ss_dssp CSTTTTGGGTTCSEEEEESC-EECSCCBC-CSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTC
T ss_pred hchhhhcCcCcccEEEecCc-cchhhhhh-hccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCC
Confidence 45677788888888888888 67778776 6667 888888888877654431100 0 0000000000011455666
Q ss_pred eEEEEEecChhh----HHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeee-ecccccc
Q 045137 87 EVLELTLGSYHA----LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKI-DYTEIVR 161 (312)
Q Consensus 87 ~~l~l~~~~~~~----~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~ 161 (312)
+.++++.+.... ...+..++ +|+.|+++++... .....+..+++|++|+++++ .+..... ..+.
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~----~L~~L~l~~n~l~---~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~--- 418 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTT----SLKYLDLSFNGVI---TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFL--- 418 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCS----CCCEEECCSCSEE---EEEEEEETCTTCCEEECTTS-EEESCTTSCTTT---
T ss_pred CEEeCcCCccCccccccccccccC----ccCEEECCCCccc---cccccccccCCCCEEEccCC-ccccccchhhhh---
Confidence 666666544321 12344445 6667766654321 11123566677777777764 2222211 1122
Q ss_pred ccCCCCcccccceEeecCCCCccc-CC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccc
Q 045137 162 KRREPFVFHSLHLVTIYSCHKLKD-ST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYL 239 (312)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~l~~-l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 239 (312)
.+++|++|++++| .+.. .+ .+..+++|++|++.+|......++ .....+++|++|+++++
T Consensus 419 ------~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-----------~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 419 ------SLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-----------DIFTELRNLTFLDLSQC 480 (570)
T ss_dssp ------TCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-----------SCCTTCTTCCEEECTTS
T ss_pred ------cCCCCCEEeCcCC-cccccchhhhhcCCcCcEEECcCCcCccccch-----------hhhhcccCCCEEECCCC
Confidence 6788888888888 4444 44 677788888888888864322212 24567899999999997
Q ss_pred cccccc-ccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhhh
Q 045137 240 PELKSI-FWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWNR 292 (312)
Q Consensus 240 ~~l~~~-~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~~ 292 (312)
.++.+ +.....+++|+.|++++| +++.++........+++.+....+.|.+
T Consensus 481 -~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 481 -QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 46555 344667899999999997 7888876655555777777655544443
No 57
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.67 E-value=2.4e-16 Score=152.92 Aligned_cols=172 Identities=19% Similarity=0.109 Sum_probs=122.0
Q ss_pred CcccCCCCCc-cccHHhhC--CCCCcEEecCCCCCcc-ccCchhhhccccccEEEEecccccccccCCCCccccCCccch
Q 045137 1 LLDISHTTIR-ELPEELKL--LVNLKCLNLRWTGALI-RIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVL 76 (312)
Q Consensus 1 ~L~Ls~~~i~-~lp~~i~~--L~~L~~L~L~~~~~~~-~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 76 (312)
+|++++|.+. .+|..+.. +++|++|++++| .+. .+|.. ++++++|++|++++|.+.. ..
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~---------------~~ 434 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPT-LSNCSELVSLHLSFNYLSG---------------TI 434 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSS-EEEEECCGG-GGGCTTCCEEECCSSEEES---------------CC
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCC-ccccccCHH-HhcCCCCCEEECcCCcccC---------------cc
Confidence 3789999886 57777777 899999999999 565 56765 9999999999999998853 44
Q ss_pred hhhccCCCCceEEEEEecChh--hHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeee
Q 045137 77 IQELLGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKI 154 (312)
Q Consensus 77 ~~~l~~L~~L~~l~l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~ 154 (312)
+..+..+++|+.++++.+... ....+..++ +|+.|++.++..... .+..+..+++|++|+++++. +.....
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~----~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~L~~N~-l~~~~p 507 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK----TLETLILDFNDLTGE--IPSGLSNCTNLNWISLSNNR-LTGEIP 507 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT----TCCEEECCSSCCCSC--CCGGGGGCTTCCEEECCSSC-CCSCCC
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCC----CceEEEecCCcccCc--CCHHHhcCCCCCEEEccCCc-cCCcCC
Confidence 556777788888888766543 222445555 788888887643222 23567778888888888763 432222
Q ss_pred eccccccccCCCCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccc
Q 045137 155 DYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRA 205 (312)
Q Consensus 155 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~ 205 (312)
.++. .+++|++|++++|.....+| .++.+++|+.|++++|..
T Consensus 508 ~~~~---------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 508 KWIG---------RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp GGGG---------GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred hHHh---------cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 3333 67888888888883333466 677788888888877754
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=2.9e-16 Score=148.67 Aligned_cols=116 Identities=17% Similarity=0.137 Sum_probs=84.0
Q ss_pred CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCC-CCccc------cCC
Q 045137 1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAP-EDSVL------FGG 72 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~-~~~~~------~~~ 72 (312)
+||||+|.|+.+| .+|+++++|++|+|++| .+..+|+++|.++++|++|++++|.+..+|.+. ..... ..-
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence 4899999999997 67999999999999999 899998888999999999999999988876542 22211 111
Q ss_pred --ccchhhhccCCCCceEEEEEecChhhH---HHHhhcccccccceEEEEeecC
Q 045137 73 --GEVLIQELLGLKYLEVLELTLGSYHAL---QILLSSNKLKSCIRSLYLYLTG 121 (312)
Q Consensus 73 --~~~~~~~l~~L~~L~~l~l~~~~~~~~---~~l~~l~~l~~~L~~L~l~~~~ 121 (312)
.......++.+++|+.|+++.+....+ ..+..++ .|+.|+++++.
T Consensus 135 ~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~----~L~~L~L~~N~ 184 (635)
T 4g8a_A 135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT----NLEHLDLSSNK 184 (635)
T ss_dssp CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT----TCCEEECCSSC
T ss_pred cCCCCChhhhhcCcccCeeccccCccccCCCchhhccch----hhhhhcccCcc
Confidence 111122366778888888876654322 2344555 78888887654
No 59
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.67 E-value=1.5e-16 Score=152.41 Aligned_cols=257 Identities=15% Similarity=0.096 Sum_probs=127.4
Q ss_pred HhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccc--ccccCCCC---------ccccC--Cccchhhhcc
Q 045137 15 ELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF--IFYEAPED---------SVLFG--GGEVLIQELL 81 (312)
Q Consensus 15 ~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~--~~~~~~~~---------~~~~~--~~~~~~~~l~ 81 (312)
.|+.+++|++|++++| .+..+++..+.++++|++|++++|.+. .++..... +...+ ........+.
T Consensus 324 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 6778888888888888 677776666788888888888776532 22111100 00010 1122234566
Q ss_pred CCCCceEEEEEecChhh-H--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCccee--eeec
Q 045137 82 GLKYLEVLELTLGSYHA-L--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEEL--KIDY 156 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~-~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l--~~~~ 156 (312)
.+.+|+.++++.+.... + ..+..++ +|+.|+++++... .. ....+..+++|++|+++++. +..+ ....
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~----~L~~L~Ls~n~l~-~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~ 475 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLE----NIFEIYLSYNKYL-QL-TRNSFALVPSLQRLMLRRVA-LKNVDSSPSP 475 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCT----TCCEEECCSCSEE-EC-CTTTTTTCTTCCEEECTTSC-CBCTTCSSCT
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcc----cccEEecCCCCcc-ee-ChhhhhcCcccccchhcccc-ccccccCCcc
Confidence 77788888877654421 1 2344445 6777777665311 11 11344455556666655432 2111 0011
Q ss_pred cccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCc-------c------------
Q 045137 157 TEIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGK-------I------------ 215 (312)
Q Consensus 157 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~-------~------------ 215 (312)
+. .+++|+.|++++| .++.++ .++.+++|++|++++|...... .... .
T Consensus 476 ~~---------~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 476 FQ---------PLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLW-KHANPGGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp TT---------TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGGG-STTSTTSCCCTTTTCTTCCEEECC
T ss_pred cc---------cCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCccccc-hhhccCCcchhhcCCCCCCEEECC
Confidence 11 4455555555554 344433 2444555555555544321110 0000 0
Q ss_pred -ccCCCCC-CCCccCCCcCeeeccccccccccccC-CcCCCCccEEEecCCCCCCCCCCCCcc-ccccceEeeehHhhhh
Q 045137 216 -AENPEMM-GHISPFENLKSLDLSYLPELKSIFWK-PLPFTHLKEMGVRACDQLRKLPLDSNS-AKERKFVIRGEEDWWN 291 (312)
Q Consensus 216 -~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~-~~~~l~~i~~~~~~~~ 291 (312)
..+..+. .....+++|+.|+++++ .++.++.. ...+++|+.|+++++ +++.++..... ...+++.+....|.|.
T Consensus 545 ~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 545 SNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence 0000000 12345566777777653 45555544 245677777777775 56665543332 2355666665555554
Q ss_pred h
Q 045137 292 R 292 (312)
Q Consensus 292 ~ 292 (312)
+
T Consensus 623 c 623 (680)
T 1ziw_A 623 C 623 (680)
T ss_dssp B
T ss_pred c
Confidence 4
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.5e-16 Score=135.20 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=64.9
Q ss_pred CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
+|+|++|.+..+| ..|+.+++|++|++++| .+..+|.+++.++++|++|++++|.+..++ ...
T Consensus 41 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~ 104 (270)
T 2o6q_A 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALP---------------IGV 104 (270)
T ss_dssp EEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCC---------------TTT
T ss_pred EEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCC---------------HhH
Confidence 3789999999887 57999999999999999 899999887899999999999999886432 234
Q ss_pred ccCCCCceEEEEEecC
Q 045137 80 LLGLKYLEVLELTLGS 95 (312)
Q Consensus 80 l~~L~~L~~l~l~~~~ 95 (312)
+..+.+|+.|+++.+.
T Consensus 105 ~~~l~~L~~L~l~~n~ 120 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQ 120 (270)
T ss_dssp TTTCSSCCEEECCSSC
T ss_pred cccccCCCEEECCCCc
Confidence 5666777777776543
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.66 E-value=8.9e-16 Score=146.93 Aligned_cols=187 Identities=19% Similarity=0.169 Sum_probs=104.6
Q ss_pred CcccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccccccc-CCCCccc------cC-
Q 045137 1 LLDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYE-APEDSVL------FG- 71 (312)
Q Consensus 1 ~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~~~------~~- 71 (312)
+|+|++|.+..+ |..|+++++|++|++++| .+..+|+..++++++|++|++++|.+..++. .+..... ..
T Consensus 53 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp EEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred EEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC
Confidence 367888888766 577888888888888888 7778887668888888888888887765542 2222110 00
Q ss_pred -CccchhhhccCCCCceEEEEEecChhhH--HHHh--hcccccccceEEEEeecCCCccccchhhhcCccc---------
Q 045137 72 -GGEVLIQELLGLKYLEVLELTLGSYHAL--QILL--SSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNH--------- 137 (312)
Q Consensus 72 -~~~~~~~~l~~L~~L~~l~l~~~~~~~~--~~l~--~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~--------- 137 (312)
.....+..+..+++|+.++++.+..... ..+. ..+ +|+.|+++++...... +..+..+.+
T Consensus 132 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~----~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~~ 205 (680)
T 1ziw_A 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS----SLKKLELSSNQIKEFS--PGCFHAIGRLFGLFLNNV 205 (680)
T ss_dssp CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC----EESEEECTTCCCCCBC--TTGGGGSSEECEEECTTC
T ss_pred cccccCchhhcccccCCEEEccCCcccccCHHHhhccccc----cccEEECCCCcccccC--hhhhhhhhhhhhhhcccc
Confidence 0112234455677777777765543221 1221 223 5777777654321111 122333333
Q ss_pred ------------------cceEEeccCcCcceeeeeccccccccCCCCcc--cccceEeecCCCCcccCC--ccCCCCCC
Q 045137 138 ------------------LNELWIDNGIELEELKIDYTEIVRKRREPFVF--HSLHLVTIYSCHKLKDST--FLAFAPNL 195 (312)
Q Consensus 138 ------------------L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~--~l~~l~~L 195 (312)
|++|+++++ .+.......+. .+ ++|+.|++++| .+..++ .++.+++|
T Consensus 206 ~l~~~~~~~~~~~l~~~~L~~L~L~~n-~l~~~~~~~~~---------~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 274 (680)
T 1ziw_A 206 QLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFL---------GLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQL 274 (680)
T ss_dssp CCHHHHHHHHHHHHTTSCCCEEECTTS-CCCEECTTTTG---------GGGGSCCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred ccChhhHHHHHHHhhhccccEEEccCC-cccccChhHhh---------ccCcCCCCEEECCCC-CcCccCcccccCcccc
Confidence 344444433 22222111111 23 34888888877 555543 56777888
Q ss_pred ceEEEeeccc
Q 045137 196 KSLSLFKCRA 205 (312)
Q Consensus 196 ~~L~l~~~~~ 205 (312)
++|++++|..
T Consensus 275 ~~L~L~~n~l 284 (680)
T 1ziw_A 275 EYFFLEYNNI 284 (680)
T ss_dssp CEEECCSCCB
T ss_pred cEeeCCCCcc
Confidence 8888877653
No 62
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=3.1e-17 Score=143.65 Aligned_cols=172 Identities=17% Similarity=0.135 Sum_probs=75.4
Q ss_pred ccCCCCCccccHHhhCCCCCcEEecCCCCCccc--cCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIR--IPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
++++|.+...+..+..+++|++|++++| .+.. ++. .+..+++|++|++++|.+.. ..+..+
T Consensus 76 ~l~~n~l~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~---------------~~~~~l 138 (336)
T 2ast_B 76 RCPRSFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHG-ILSQCSKLQNLSLEGLRLSD---------------PIVNTL 138 (336)
T ss_dssp ECTTCEECSCCCSCCCCBCCCEEECTTC-EECHHHHHH-HHTTBCCCSEEECTTCBCCH---------------HHHHHH
T ss_pred EcCCccccccchhhccCCCCCEEEccCC-CcCHHHHHH-HHhhCCCCCEEeCcCcccCH---------------HHHHHH
Confidence 3444444433333444555555555555 3332 332 24555555555555554421 333444
Q ss_pred cCCCCceEEEEEec-Chh--hHHH-HhhcccccccceEEEEeecCCCccccchhhhcCcc-ccceEEeccCc-Ccceeee
Q 045137 81 LGLKYLEVLELTLG-SYH--ALQI-LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLN-HLNELWIDNGI-ELEELKI 154 (312)
Q Consensus 81 ~~L~~L~~l~l~~~-~~~--~~~~-l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~-~l~~l~~ 154 (312)
..+++|+.|+++.+ ... .++. +..++ +|+.|+++++.......+...+..++ +|++|++++|. .+....+
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~----~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l 214 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCS----RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCT----TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCC----CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH
Confidence 44555555555443 221 1221 33333 55555555542222222223444555 55555555542 1211000
Q ss_pred -eccccccccCCCCcccccceEeecCCCCccc--CCccCCCCCCceEEEeecc
Q 045137 155 -DYTEIVRKRREPFVFHSLHLVTIYSCHKLKD--STFLAFAPNLKSLSLFKCR 204 (312)
Q Consensus 155 -~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~l~~l~~L~~L~l~~~~ 204 (312)
.... .+++|++|++++|..+++ ++.++.+++|++|++++|.
T Consensus 215 ~~~~~---------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 215 STLVR---------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHH---------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHHHh---------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 1111 455555555555532332 2244555555555555554
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.66 E-value=2.3e-16 Score=144.02 Aligned_cols=171 Identities=15% Similarity=0.066 Sum_probs=94.4
Q ss_pred CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCcc------ccCCcc
Q 045137 1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSV------LFGGGE 74 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~------~~~~~~ 74 (312)
+|+|++|.++.+| ++.+++|++|++++| .+..++ ++++++|++|++++|.+..++ +.... ...-..
T Consensus 68 ~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l 139 (457)
T 3bz5_A 68 KLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTL 139 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCC
T ss_pred EEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcc
Confidence 4788888888886 888899999999998 677774 778888999999888776432 11100 000000
Q ss_pred chhhhccCCCCceEEEEEecC-hhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceee
Q 045137 75 VLIQELLGLKYLEVLELTLGS-YHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELK 153 (312)
Q Consensus 75 ~~~~~l~~L~~L~~l~l~~~~-~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~ 153 (312)
..+ .+..+++|+.++++.+. ...+ .+..++ +|+.|+++++.-.. + + +..+++|+.|+++++ .+..+.
T Consensus 140 ~~l-~l~~l~~L~~L~l~~n~~~~~~-~~~~l~----~L~~L~ls~n~l~~---l-~-l~~l~~L~~L~l~~N-~l~~~~ 207 (457)
T 3bz5_A 140 TEI-DVSHNTQLTELDCHLNKKITKL-DVTPQT----QLTTLDCSFNKITE---L-D-VSQNKLLNRLNCDTN-NITKLD 207 (457)
T ss_dssp SCC-CCTTCTTCCEEECTTCSCCCCC-CCTTCT----TCCEEECCSSCCCC---C-C-CTTCTTCCEEECCSS-CCSCCC
T ss_pred cee-ccccCCcCCEEECCCCCccccc-ccccCC----cCCEEECCCCccce---e-c-cccCCCCCEEECcCC-cCCeec
Confidence 001 13334444444443331 1111 122222 45555554432111 1 1 344455555555543 333321
Q ss_pred eeccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccc
Q 045137 154 IDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRA 205 (312)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~ 205 (312)
+. .+++|+.|++++| .+..+| ++.+++|++|++++|..
T Consensus 208 ---l~---------~l~~L~~L~Ls~N-~l~~ip-~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 208 ---LN---------QNIQLTFLDCSSN-KLTEID-VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp ---CT---------TCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSCC
T ss_pred ---cc---------cCCCCCEEECcCC-cccccC-ccccCCCCEEEeeCCcC
Confidence 11 5677777777777 566665 66677777777776653
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=146.57 Aligned_cols=131 Identities=19% Similarity=0.222 Sum_probs=96.2
Q ss_pred CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
+|+|++|.++.++ ..|+.+++|++|++++| .+..+++++++++++|++|++++|.+.. .....
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~ 95 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQS---------------LALGA 95 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCE---------------ECTTT
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCc---------------cCHhh
Confidence 3789999998876 68999999999999999 7888887778999999999999998864 23355
Q ss_pred ccCCCCceEEEEEecChhhHHH--HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceee
Q 045137 80 LLGLKYLEVLELTLGSYHALQI--LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELK 153 (312)
Q Consensus 80 l~~L~~L~~l~l~~~~~~~~~~--l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~ 153 (312)
+..+++|+.|+++.+....++. +.+++ +|+.|+++++.. ....++..+..+++|++|+++++ .+..+.
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~----~L~~L~L~~n~l-~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~ 165 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLK----TLKELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSN-KIQSIY 165 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCT----TCCEEECCSSCC-CCCCCCGGGGGCTTCCEEECTTS-CCCEEC
T ss_pred hcCccccccccccccccccCCCccccccc----cccEEecCCCcc-ceecChhhhcccCCCCEEeCcCC-ccceec
Confidence 6777888888887665443332 44555 788888877532 22233456777888888888865 444443
No 65
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.66 E-value=1.7e-15 Score=148.50 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=57.7
Q ss_pred cccCCC-CCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccc-cccC--CCCccc------c
Q 045137 2 LDISHT-TIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFI-FYEA--PEDSVL------F 70 (312)
Q Consensus 2 L~Ls~~-~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~-~~~~--~~~~~~------~ 70 (312)
|+|++| .+..+ |..|+++++|++|+|++| .+..+++..++++++|++|++++|.+.. ++.+ +..... .
T Consensus 53 LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls 131 (844)
T 3j0a_A 53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131 (844)
T ss_dssp EEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEE
T ss_pred EeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECC
Confidence 567777 34455 567777777777777777 6666644447777777777777776653 2222 222110 1
Q ss_pred CC---ccchhhhccCCCCceEEEEEecCh
Q 045137 71 GG---GEVLIQELLGLKYLEVLELTLGSY 96 (312)
Q Consensus 71 ~~---~~~~~~~l~~L~~L~~l~l~~~~~ 96 (312)
.- .......+..+++|+.|+++.+..
T Consensus 132 ~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp SCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCcccccccchhHhhCCCCCEEECCCCcC
Confidence 10 111224678899999999997654
No 66
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.65 E-value=9.5e-15 Score=136.83 Aligned_cols=114 Identities=19% Similarity=0.175 Sum_probs=80.1
Q ss_pred CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCcc------ccCCc
Q 045137 1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSV------LFGGG 73 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~------~~~~~ 73 (312)
+|+|++|.++.+| ..|+.+++|++|++++| .+..++++.+.++++|++|++++|.+..+|.. ... ..+-.
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND 132 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC
Confidence 3788999998886 78999999999999999 88888666689999999999999988877754 111 11111
Q ss_pred ---cchhhhccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeec
Q 045137 74 ---EVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLT 120 (312)
Q Consensus 74 ---~~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~ 120 (312)
...+..+..+++|+.|+++.+.... ..+..++.+ +|+.|++.++
T Consensus 133 l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L--~L~~L~L~~n 179 (562)
T 3a79_B 133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHL--HLSCILLDLV 179 (562)
T ss_dssp CSBCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTS--CEEEEEEEES
T ss_pred ccccCchHhhcccCcccEEecCCCcccc-Cchhhhhhc--eeeEEEeecc
Confidence 1223567788888888888765533 233444422 2377777765
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=3.5e-16 Score=143.99 Aligned_cols=225 Identities=16% Similarity=0.101 Sum_probs=164.8
Q ss_pred CccccHHhhCCC----CCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCC
Q 045137 9 IRELPEELKLLV----NLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLK 84 (312)
Q Consensus 9 i~~lp~~i~~L~----~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 84 (312)
...+|..+..+. +|++|+|++| .+..+++..++.+++|++|++++|.+... ..+..++
T Consensus 19 ~~~l~~~l~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------------~~l~~l~ 80 (487)
T 3oja_A 19 DSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYET-----------------LDLESLS 80 (487)
T ss_dssp TTTHHHHHHTTSTTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEE-----------------EECTTCT
T ss_pred hhhhHHHHHHhcccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCC-----------------cccccCC
Confidence 346777777766 8999999999 88888776699999999999999988531 1277889
Q ss_pred CceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccC
Q 045137 85 YLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRR 164 (312)
Q Consensus 85 ~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 164 (312)
+|+.|+++.+....++ ..+ +|+.|+++++...... ...+++|++|+++++ .+..+....+.
T Consensus 81 ~L~~L~Ls~N~l~~l~---~~~----~L~~L~L~~N~l~~~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~~------ 141 (487)
T 3oja_A 81 TLRTLDLNNNYVQELL---VGP----SIETLHAANNNISRVS-----CSRGQGKKNIYLANN-KITMLRDLDEG------ 141 (487)
T ss_dssp TCCEEECCSSEEEEEE---ECT----TCCEEECCSSCCCCEE-----ECCCSSCEEEECCSS-CCCSGGGBCGG------
T ss_pred CCCEEEecCCcCCCCC---CCC----CcCEEECcCCcCCCCC-----ccccCCCCEEECCCC-CCCCCCchhhc------
Confidence 9999999877554322 223 7999999886433221 124578999999976 55554333333
Q ss_pred CCCcccccceEeecCCCCcccC-C-ccC-CCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccc
Q 045137 165 EPFVFHSLHLVTIYSCHKLKDS-T-FLA-FAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPE 241 (312)
Q Consensus 165 ~~~~~~~L~~L~l~~~~~l~~l-~-~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 241 (312)
.+++|+.|++++| .+..+ | .+. .+++|++|++++|...... ....+++|++|+++++ .
T Consensus 142 ---~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--------------~~~~l~~L~~L~Ls~N-~ 202 (487)
T 3oja_A 142 ---CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------------GQVVFAKLKTLDLSSN-K 202 (487)
T ss_dssp ---GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------------CCCCCTTCCEEECCSS-C
T ss_pred ---CCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCcccccc--------------ccccCCCCCEEECCCC-C
Confidence 7899999999999 66663 3 454 6999999999998743332 2235899999999996 5
Q ss_pred ccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhh
Q 045137 242 LKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN 291 (312)
Q Consensus 242 l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~ 291 (312)
++.++.....+++|+.|+++++ +++.+|...... ..+..+....+.|.
T Consensus 203 l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l-~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 203 LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFS-QNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCC-TTCCEEECTTCCBC
T ss_pred CCCCCHhHcCCCCccEEEecCC-cCcccchhhccC-CCCCEEEcCCCCCc
Confidence 7777777778999999999995 688888754333 56666654444443
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=2.8e-16 Score=146.62 Aligned_cols=168 Identities=20% Similarity=0.223 Sum_probs=113.2
Q ss_pred ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137 3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG 82 (312)
Q Consensus 3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (312)
|.+++.++.+|.++. ++|++|++++| .+..+++..+.++++|++|++++|.+..+ ....+..
T Consensus 11 ~~~~~~l~~ip~~~~--~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~---------------~~~~~~~ 72 (549)
T 2z81_A 11 DGRSRSFTSIPSGLT--AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTI---------------EGDAFYS 72 (549)
T ss_dssp ECTTSCCSSCCSCCC--TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEE---------------CTTTTTT
T ss_pred ECCCCccccccccCC--CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCcc---------------Chhhccc
Confidence 567889999997664 89999999999 78888665699999999999999988653 3345667
Q ss_pred CCCceEEEEEecChhhH--HHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137 83 LKYLEVLELTLGSYHAL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV 160 (312)
Q Consensus 83 L~~L~~l~l~~~~~~~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 160 (312)
+++|++|+++.+..... ..+..++ +|+.|+++++.-. ....+..+..+++|++|+++++.....++...+.
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~----~L~~L~Ls~n~l~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-- 145 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLS----SLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA-- 145 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCT----TCCEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT--
T ss_pred cccCCEEECCCCccCccCHHHhccCC----CCcEEECCCCccc-ccchhhhhhccCCccEEECCCCccccccCHhhhh--
Confidence 77888888876644322 2355666 7788887765322 2222245677778888888776435544433332
Q ss_pred cccCCCCcccccceEeecCCCCccc-CC-ccCCCCCCceEEEeec
Q 045137 161 RKRREPFVFHSLHLVTIYSCHKLKD-ST-FLAFAPNLKSLSLFKC 203 (312)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~~l~~-l~-~l~~l~~L~~L~l~~~ 203 (312)
.+++|++|++++| .+.. .| .++.+++|++|+++++
T Consensus 146 -------~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 146 -------GLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp -------TCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECS
T ss_pred -------cccccCeeeccCC-cccccChhhhhccccCceEecccC
Confidence 5677777777776 4443 33 4555555555555544
No 69
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=2.6e-15 Score=132.41 Aligned_cols=220 Identities=16% Similarity=0.123 Sum_probs=126.8
Q ss_pred cEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChh-hHH-
Q 045137 23 KCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH-ALQ- 100 (312)
Q Consensus 23 ~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~-~~~- 100 (312)
++++-+++ .++.+|.+ + .+++++|++++|.+..+| ...+..+++|+.|+++.+... .++
T Consensus 12 ~~v~C~~~-~Lt~iP~~-l--~~~l~~L~Ls~N~i~~i~---------------~~~f~~l~~L~~L~Ls~N~i~~~i~~ 72 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSD-L--PRNAIELRFVLTKLRVIQ---------------KGAFSGFGDLEKIEISQNDVLEVIEA 72 (350)
T ss_dssp TEEEEEST-TCCSCCTT-C--CTTCSEEEEESCCCSEEC---------------TTSSTTCTTCCEEEEECCTTCCEECT
T ss_pred CEEEecCC-CCCccCcC-c--CCCCCEEEccCCcCCCcC---------------HHHHcCCCCCCEEECcCCCCCCccCh
Confidence 56777777 88899987 4 368999999999987543 234677888899999877542 122
Q ss_pred -HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc---------------ccccC
Q 045137 101 -ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI---------------VRKRR 164 (312)
Q Consensus 101 -~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~---------------~~~~~ 164 (312)
.+.+++ .++.+.+........... ..+..+++|++|+++++ .+..+....... .....
T Consensus 73 ~~f~~L~----~l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~ 146 (350)
T 4ay9_X 73 DVFSNLP----KLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146 (350)
T ss_dssp TSBCSCT----TCCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECT
T ss_pred hHhhcch----hhhhhhcccCCcccccCc-hhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccc
Confidence 233444 444444444333333322 46677888888888765 343332221110 00000
Q ss_pred C--CCcccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccc
Q 045137 165 E--PFVFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPE 241 (312)
Q Consensus 165 ~--~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 241 (312)
. ......++.|++++| .++.++ .....++|+.|.+.++..++.+.. .....+++|++|+++++ .
T Consensus 147 ~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~-----------~~f~~l~~L~~LdLs~N-~ 213 (350)
T 4ay9_X 147 NSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPN-----------DVFHGASGPVILDISRT-R 213 (350)
T ss_dssp TSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCT-----------TTTTTEECCSEEECTTS-C
T ss_pred cchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCH-----------HHhccCcccchhhcCCC-C
Confidence 0 001123444555544 444443 222334455555544333333211 12356788999999986 6
Q ss_pred ccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEee
Q 045137 242 LKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIR 284 (312)
Q Consensus 242 l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~ 284 (312)
++.++. ..+..|++|.+.++.+++.+|.-. ...+++...
T Consensus 214 l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~--~l~~L~~l~ 252 (350)
T 4ay9_X 214 IHSLPS--YGLENLKKLRARSTYNLKKLPTLE--KLVALMEAS 252 (350)
T ss_dssp CCCCCS--SSCTTCCEEECTTCTTCCCCCCTT--TCCSCCEEE
T ss_pred cCccCh--hhhccchHhhhccCCCcCcCCCch--hCcChhhCc
Confidence 777754 458899999999999999999522 224555544
No 70
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=9.7e-17 Score=140.51 Aligned_cols=220 Identities=15% Similarity=0.092 Sum_probs=162.6
Q ss_pred cccCCCCCccccHHhhCC--CCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 2 LDISHTTIRELPEELKLL--VNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L--~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
++++++.+. |..++.+ +++++|++++| .+...++. +..+++|++|++++|.+.. ......
T Consensus 52 l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~~--------------~~~~~~ 113 (336)
T 2ast_B 52 LDLTGKNLH--PDVTGRLLSQGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIEV--------------STLHGI 113 (336)
T ss_dssp EECTTCBCC--HHHHHHHHHTTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEECH--------------HHHHHH
T ss_pred eccccccCC--HHHHHhhhhccceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcCH--------------HHHHHH
Confidence 577887776 6778888 99999999999 77776665 7789999999999998642 124566
Q ss_pred ccCCCCceEEEEEecChh--hHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeee-ec
Q 045137 80 LLGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKI-DY 156 (312)
Q Consensus 80 l~~L~~L~~l~l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~ 156 (312)
+..+++|+.|+++.+... ....+..++ +|+.|+++++...........+..+++|++|++++|..+..... ..
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~----~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNS----NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCT----TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCC----CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 788899999999866543 344566666 89999999875444434445678899999999998855554221 22
Q ss_pred cccccccCCCCccc-ccceEeecCCC-Ccc--cCC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCc
Q 045137 157 TEIVRKRREPFVFH-SLHLVTIYSCH-KLK--DST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENL 231 (312)
Q Consensus 157 ~~~~~~~~~~~~~~-~L~~L~l~~~~-~l~--~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 231 (312)
.. .++ +|++|++++|. .+. .++ .+..+++|++|++++|..+++... .....+++|
T Consensus 190 ~~---------~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-----------~~l~~l~~L 249 (336)
T 2ast_B 190 VA---------HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-----------QEFFQLNYL 249 (336)
T ss_dssp HH---------HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-----------GGGGGCTTC
T ss_pred HH---------hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-----------HHHhCCCCC
Confidence 22 678 99999999995 343 244 566799999999999985443211 134567999
Q ss_pred Ceeecccccccccccc-CCcCCCCccEEEecCC
Q 045137 232 KSLDLSYLPELKSIFW-KPLPFTHLKEMGVRAC 263 (312)
Q Consensus 232 ~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c 263 (312)
++|++++|..+..... ....+++|+.|++++|
T Consensus 250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9999999875544332 2456999999999998
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=2e-16 Score=137.32 Aligned_cols=241 Identities=17% Similarity=0.114 Sum_probs=137.8
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccc--cCchhhh-------ccccccEEEEecccccccccCCCCccccCC
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIR--IPRGLIS-------KFSRLRVLRMLGTGGFIFYEAPEDSVLFGG 72 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~--lp~~~i~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 72 (312)
|++++|.+ .+|.++... |++|++++| .+.. +|.. +. ++++|++|++++|.+..
T Consensus 48 l~l~~n~l-~~p~~~~~~--L~~L~L~~n-~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~------------- 109 (312)
T 1wwl_A 48 LLKRVDTE-ADLGQFTDI--IKSLSLKRL-TVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTG------------- 109 (312)
T ss_dssp HHHHCCTT-CCCHHHHHH--HHHCCCCEE-EEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBS-------------
T ss_pred Eeeccccc-ccHHHHHHH--Hhhcccccc-cccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccc-------------
Confidence 45667777 677666654 777777777 5533 4443 33 57778888888777642
Q ss_pred ccchhhhc--cCCCCceEEEEEecChhhHH-HHhhccc-ccccceEEEEeecCCCccccchhhhcCccccceEEeccCcC
Q 045137 73 GEVLIQEL--LGLKYLEVLELTLGSYHALQ-ILLSSNK-LKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIE 148 (312)
Q Consensus 73 ~~~~~~~l--~~L~~L~~l~l~~~~~~~~~-~l~~l~~-l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 148 (312)
..+..+ ..+++|+.|+++.+.....+ .+..+.. ...+|+.|+++++.... .. +..+..+++|++|+++++.-
T Consensus 110 --~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~-~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 110 --TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FS-CEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp --CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC-CC-TTTCCCCSSCCEEECCSCTT
T ss_pred --hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc-ch-HHHhccCCCCCEEECCCCCc
Confidence 222222 66777777777766543221 1222200 00167788887764322 11 14667778888888886632
Q ss_pred cceeee--ec-cccccccCCCCcccccceEeecCCCCcccCC-----ccCCCCCCceEEEeeccccceecccCccccCCC
Q 045137 149 LEELKI--DY-TEIVRKRREPFVFHSLHLVTIYSCHKLKDST-----FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPE 220 (312)
Q Consensus 149 l~~l~~--~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 220 (312)
....+. .. .. .+++|++|++++| .+..++ .+..+++|++|++++|...... +.
T Consensus 186 ~~~~~~~~~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~-------- 246 (312)
T 1wwl_A 186 LGERGLISALCPL---------KFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAA-GA-------- 246 (312)
T ss_dssp CHHHHHHHHSCTT---------SCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-CC--------
T ss_pred CcchHHHHHHHhc---------cCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCccc-ch--------
Confidence 221110 11 01 6778888888887 565332 2345678888888777543322 10
Q ss_pred CCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCCCCccccccceEeeehHhhhh
Q 045137 221 MMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN 291 (312)
Q Consensus 221 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~ 291 (312)
.....+++|++|+++++ .++.++.... ++|+.|+++++ +++.+|. .....+++.+....|.+.
T Consensus 247 --~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~--~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 247 --PSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS--PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp --SCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC--TTTSCEEEEEECTTCTTT
T ss_pred --hhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh--HhhCCCCCEEeccCCCCC
Confidence 12234577888888775 4655544332 67888888874 6777755 223366666665544443
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=3.9e-16 Score=132.82 Aligned_cols=215 Identities=15% Similarity=0.147 Sum_probs=147.0
Q ss_pred ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137 3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG 82 (312)
Q Consensus 3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (312)
+++.+.+..+ .....+++|+.|++++| .+..++. ++.+++|++|++++|.+.. +..+..
T Consensus 25 ~l~~~~~~~~-~~~~~l~~L~~L~l~~~-~i~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~~~l~~ 83 (272)
T 3rfs_A 25 NLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSVQG--IQYLPNVRYLALGGNKLHD-----------------ISALKE 83 (272)
T ss_dssp HHTCSCTTSE-ECHHHHTTCCEEECTTS-CCCCCTT--GGGCTTCCEEECTTSCCCC-----------------CGGGTT
T ss_pred HhcCcccccc-cccccccceeeeeeCCC-Ccccccc--cccCCCCcEEECCCCCCCC-----------------chhhcC
Confidence 3455555544 24667888899999888 7777765 8888999999998887742 346777
Q ss_pred CCCceEEEEEecChhhHHH--HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137 83 LKYLEVLELTLGSYHALQI--LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV 160 (312)
Q Consensus 83 L~~L~~l~l~~~~~~~~~~--l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 160 (312)
+++|+.|+++.+....+.. +..++ +|+.|++.++.-. ... ...+..+++|++|+++++ .+..+....+.
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~~l~----~L~~L~L~~n~l~-~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-- 154 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFDKLT----NLKELVLVENQLQ-SLP-DGVFDKLTNLTYLNLAHN-QLQSLPKGVFD-- 154 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCT----TCCEEECTTSCCC-CCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTT--
T ss_pred CCCCCEEECCCCccCccChhHhcCCc----CCCEEECCCCcCC-ccC-HHHhccCCCCCEEECCCC-ccCccCHHHhc--
Confidence 8888888887665543332 44555 7888888876432 111 135778889999999876 56655544333
Q ss_pred cccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccc
Q 045137 161 RKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSY 238 (312)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 238 (312)
.+++|+.|++++| .+..++ .++.+++|++|++++|.... ..+ .....+++|++|++++
T Consensus 155 -------~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-----------~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 155 -------KLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPD-----------GVFDRLTSLQYIWLHD 214 (272)
T ss_dssp -------TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC-CCT-----------TTTTTCTTCCEEECCS
T ss_pred -------cCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCc-cCH-----------HHHhCCcCCCEEEccC
Confidence 7899999999999 777766 36789999999999886432 211 1345678999999988
Q ss_pred cccccccccCCcCCCCccEEEecCCCCCCCCCCCCc
Q 045137 239 LPELKSIFWKPLPFTHLKEMGVRACDQLRKLPLDSN 274 (312)
Q Consensus 239 ~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~ 274 (312)
++- .+.++.|+.+++..+.--..+|....
T Consensus 215 N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 215 NPW-------DCTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp SCB-------CCCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CCc-------cccCcHHHHHHHHHHhCCCcccCccc
Confidence 741 24477788777765433334554333
No 73
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=9.7e-16 Score=131.66 Aligned_cols=182 Identities=18% Similarity=0.202 Sum_probs=129.8
Q ss_pred ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137 3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG 82 (312)
Q Consensus 3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (312)
++..+.+..+. .++.+++|++|++++| .+..++. +..+++|++|++++|.+..+ ..+..
T Consensus 30 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~-~i~~~~~--~~~l~~L~~L~L~~n~l~~~-----------------~~l~~ 88 (291)
T 1h6t_A 30 NLKKKSVTDAV-TQNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLTDI-----------------KPLAN 88 (291)
T ss_dssp HTTCSCTTSEE-CHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCC-----------------GGGTT
T ss_pred HhcCCCccccc-chhhcCcccEEEccCC-CcccChh--HhcCCCCCEEEccCCccCCC-----------------ccccc
Confidence 34555555543 3467888888888888 7777764 88888888888888877531 12777
Q ss_pred CCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccc
Q 045137 83 LKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRK 162 (312)
Q Consensus 83 L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 162 (312)
+++|+.|+++.+....++.+..++ +|+.|+++++.... + ..+..+++|++|+++++ .+..+ ..+.
T Consensus 89 l~~L~~L~l~~n~l~~~~~l~~l~----~L~~L~L~~n~i~~---~-~~l~~l~~L~~L~l~~n-~l~~~--~~l~---- 153 (291)
T 1h6t_A 89 LKNLGWLFLDENKVKDLSSLKDLK----KLKSLSLEHNGISD---I-NGLVHLPQLESLYLGNN-KITDI--TVLS---- 153 (291)
T ss_dssp CTTCCEEECCSSCCCCGGGGTTCT----TCCEEECTTSCCCC---C-GGGGGCTTCCEEECCSS-CCCCC--GGGG----
T ss_pred CCCCCEEECCCCcCCCChhhccCC----CCCEEECCCCcCCC---C-hhhcCCCCCCEEEccCC-cCCcc--hhhc----
Confidence 888888888877666666666666 78888888764322 2 45777888888988876 45544 2332
Q ss_pred cCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccc
Q 045137 163 RREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLP 240 (312)
Q Consensus 163 ~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 240 (312)
.+++|++|++++| .+.+++.+..+++|++|++++|.. ..+ + ....+++|+.|++++++
T Consensus 154 -----~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L~~N~i-~~l-~------------~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 154 -----RLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNHI-SDL-R------------ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -----GCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CBC-G------------GGTTCTTCSEEEEEEEE
T ss_pred -----cCCCCCEEEccCC-ccccchhhcCCCccCEEECCCCcC-CCC-h------------hhccCCCCCEEECcCCc
Confidence 7788999999888 777776788888999999888753 332 1 24567888888888764
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=2e-15 Score=128.57 Aligned_cols=218 Identities=17% Similarity=0.146 Sum_probs=150.9
Q ss_pred EEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhhHH--H
Q 045137 24 CLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ--I 101 (312)
Q Consensus 24 ~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~--~ 101 (312)
+.+-.+. .+..+|.. +. ++|++|++++|.+..+ ....+..+++|+.++++.+....+. .
T Consensus 11 ~~~c~~~-~l~~ip~~-l~--~~l~~L~ls~n~l~~~---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (276)
T 2z62_A 11 TYQCMEL-NFYKIPDN-LP--FSTKNLDLSFNPLRHL---------------GSYSFFSFPELQVLDLSRCEIQTIEDGA 71 (276)
T ss_dssp EEECTTS-CCSSCCSS-SC--TTCCEEECTTCCCCEE---------------CTTTTTTCTTCSEEECTTCCCCEECTTT
T ss_pred eEEecCC-CccccCCC-CC--CCccEEECCCCccccc---------------CHhHhccccCCcEEECCCCcCCccCHHH
Confidence 3445555 67778875 33 5799999999988652 2346778889999999876554332 3
Q ss_pred HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCC
Q 045137 102 LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCH 181 (312)
Q Consensus 102 l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 181 (312)
+..++ +|+.|+++++.-. ... ...+..+++|++|+++++ .+..+....+. .+++|++|++++|
T Consensus 72 ~~~l~----~L~~L~L~~n~l~-~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~n- 134 (276)
T 2z62_A 72 YQSLS----HLSTLILTGNPIQ-SLA-LGAFSGLSSLQKLVAVET-NLASLENFPIG---------HLKTLKELNVAHN- 134 (276)
T ss_dssp TTTCT----TCCEEECTTCCCC-EEC-TTTTTTCTTCCEEECTTS-CCCCSTTCCCT---------TCTTCCEEECCSS-
T ss_pred ccCCc----CCCEEECCCCccC-ccC-hhhhcCCccccEEECCCC-CccccCchhcc---------cCCCCCEEECcCC-
Confidence 55566 8999999876432 222 256788999999999976 45444333333 7899999999999
Q ss_pred Cccc--CC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcC----eeeccccccccccccCCcCCCC
Q 045137 182 KLKD--ST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLK----SLDLSYLPELKSIFWKPLPFTH 254 (312)
Q Consensus 182 ~l~~--l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~~~ 254 (312)
.+.. +| .++.+++|++|++++|...... . .....+++|+ +|+++++ .++.+........+
T Consensus 135 ~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~-~-----------~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~ 201 (276)
T 2z62_A 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-C-----------TDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIR 201 (276)
T ss_dssp CCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-G-----------GGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCC
T ss_pred ccceecCchhhccCCCCCEEECCCCCCCcCC-H-----------HHhhhhhhccccceeeecCCC-cccccCccccCCCc
Confidence 6665 45 7888999999999998643322 1 0223345555 7888875 57777666556678
Q ss_pred ccEEEecCCCCCCCCCCCCccccccceEeeehHhhhh
Q 045137 255 LKEMGVRACDQLRKLPLDSNSAKERKFVIRGEEDWWN 291 (312)
Q Consensus 255 L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~~~~~~~ 291 (312)
|+.|+++++ +++.+|........+++.+....|-|.
T Consensus 202 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 202 LKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ccEEECCCC-ceeecCHhHhcccccccEEEccCCccc
Confidence 999999996 588888766555577777765444444
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=5.1e-16 Score=134.71 Aligned_cols=216 Identities=18% Similarity=0.160 Sum_probs=154.5
Q ss_pred cccCCCCCc--cccHHhh-------CCCCCcEEecCCCCCcc-ccCchhh-hccccccEEEEecccccccccCCCCcccc
Q 045137 2 LDISHTTIR--ELPEELK-------LLVNLKCLNLRWTGALI-RIPRGLI-SKFSRLRVLRMLGTGGFIFYEAPEDSVLF 70 (312)
Q Consensus 2 L~Ls~~~i~--~lp~~i~-------~L~~L~~L~L~~~~~~~-~lp~~~i-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 70 (312)
|+|++|.+. .+|..+. .+++|++|++++| .+. .+|..++ ..+++|++|++++|.+..+|
T Consensus 68 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------- 137 (312)
T 1wwl_A 68 LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATRD--------- 137 (312)
T ss_dssp CCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS---------
T ss_pred cccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcchh---------
Confidence 688888885 4677766 8999999999999 666 5787632 89999999999999886522
Q ss_pred CCccchhhhccC--CCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhh--cCccccceEEec
Q 045137 71 GGGEVLIQELLG--LKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAF--TDLNHLNELWID 144 (312)
Q Consensus 71 ~~~~~~~~~l~~--L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l--~~l~~L~~L~l~ 144 (312)
..+..+.. +++|+.|+++.+...... .+..++ +|+.|+++++...........+ ..+++|++|+++
T Consensus 138 ----~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~----~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~ 209 (312)
T 1wwl_A 138 ----AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP----ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209 (312)
T ss_dssp ----SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS----SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECT
T ss_pred ----HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC----CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECC
Confidence 22223322 288999999977654333 455566 8999999987533322222333 788999999999
Q ss_pred cCcCcceee---eeccccccccCCCCcccccceEeecCCCCcccC---CccCCCCCCceEEEeeccccceecccCccccC
Q 045137 145 NGIELEELK---IDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDS---TFLAFAPNLKSLSLFKCRAMEEIISVGKIAEN 218 (312)
Q Consensus 145 ~~~~l~~l~---~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 218 (312)
++ .+..++ ..... .+++|++|++++| .+... +.+..+++|++|++++|... .+ +
T Consensus 210 ~N-~l~~~~~~~~~~~~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~i-p------- 269 (312)
T 1wwl_A 210 NA-GMETPSGVCSALAA---------ARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLK-QV-P------- 269 (312)
T ss_dssp TS-CCCCHHHHHHHHHH---------TTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCCS-SC-C-------
T ss_pred CC-cCcchHHHHHHHHh---------cCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCccC-hh-h-------
Confidence 87 454321 12222 5689999999999 66663 34556899999999998643 32 1
Q ss_pred CCCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCC
Q 045137 219 PEMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRAC 263 (312)
Q Consensus 219 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 263 (312)
...+++|++|+++++ .++.++. ...+++|+.|++++.
T Consensus 270 ------~~~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 270 ------KGLPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp ------SSCCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred ------hhccCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence 111289999999985 6777744 778999999999884
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=1.3e-15 Score=130.71 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=33.3
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF 58 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~ 58 (312)
++++++.++.+|.++. +++++|++++| .+..+++..+..+++|++|++++|.+.
T Consensus 15 l~~~~~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 68 (290)
T 1p9a_G 15 VNCDKRNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELT 68 (290)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCC
T ss_pred EECCCCCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccC
Confidence 4556666666665443 56666666666 556555444666666666666666654
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=4.2e-16 Score=132.60 Aligned_cols=155 Identities=20% Similarity=0.171 Sum_probs=69.8
Q ss_pred hccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137 79 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE 158 (312)
Q Consensus 79 ~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 158 (312)
.+..+++|+.|+++.+....++.+..++ +|+.|+++++.-. .... ..+..+++|++|+++++ .+..+....+.
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~----~L~~L~L~~n~l~-~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 130 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDISALKELT----NLTYLILTGNQLQ-SLPN-GVFDKLTNLKELVLVEN-QLQSLPDGVFD 130 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGGTTCT----TCCEEECTTSCCC-CCCT-TTTTTCTTCCEEECTTS-CCCCCCTTTTT
T ss_pred ccccCCCCcEEECCCCCCCCchhhcCCC----CCCEEECCCCccC-ccCh-hHhcCCcCCCEEECCCC-cCCccCHHHhc
Confidence 3445555555555544433333344444 5555555544221 1111 23445555555555544 33333322222
Q ss_pred cccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeec
Q 045137 159 IVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDL 236 (312)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 236 (312)
.+++|++|++++| .+..++ .++.+++|++|++++|... .+.+ .....+++|++|++
T Consensus 131 ---------~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~-----------~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 131 ---------KLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPE-----------GVFDKLTQLKDLRL 188 (272)
T ss_dssp ---------TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT-----------TTTTTCTTCCEEEC
T ss_pred ---------cCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcC-ccCH-----------HHhcCCccCCEEEC
Confidence 4555555555555 444443 2445555555555555322 1110 01234455555555
Q ss_pred cccccccccccC-CcCCCCccEEEecCC
Q 045137 237 SYLPELKSIFWK-PLPFTHLKEMGVRAC 263 (312)
Q Consensus 237 ~~~~~l~~~~~~-~~~~~~L~~L~i~~c 263 (312)
+++ .++.+... ...+++|+.|++.++
T Consensus 189 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 189 YQN-QLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCC-cCCccCHHHHhCCcCCCEEEccCC
Confidence 553 24333332 234555555555543
No 78
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=3.2e-16 Score=142.92 Aligned_cols=239 Identities=16% Similarity=0.055 Sum_probs=126.6
Q ss_pred CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccc-------------cEEEEecccccccccCCCCc
Q 045137 1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRL-------------RVLRMLGTGGFIFYEAPEDS 67 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L-------------~~L~l~~~~~~~~~~~~~~~ 67 (312)
+|++++|.+..+|.+|++|++|++|++++|...+.+|.+ ++++++| ++|++++|.+..+|.....+
T Consensus 15 ~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L 93 (454)
T 1jl5_A 15 EPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHL 93 (454)
T ss_dssp -------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTC
T ss_pred hhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCC
Confidence 368899999999999999999999999999444468876 8887765 88999988887665422111
Q ss_pred cccCCccchhhhcc-CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137 68 VLFGGGEVLIQELL-GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG 146 (312)
Q Consensus 68 ~~~~~~~~~~~~l~-~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 146 (312)
.........+..+. .+.+|+.++++.+....++. . ..+|+.|+++++.-.. + +.++.+++|++|+++++
T Consensus 94 ~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~---~---~~~L~~L~L~~n~l~~---l-p~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 94 ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD---L---PPLLEYLGVSNNQLEK---L-PELQNSSFLKIIDVDNN 163 (454)
T ss_dssp SEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCS---C---CTTCCEEECCSSCCSS---C-CCCTTCTTCCEEECCSS
T ss_pred CEEEccCCcCCccccccCCCcEEECCCCccCcccC---C---CCCCCEEECcCCCCCC---C-cccCCCCCCCEEECCCC
Confidence 11100000011111 13567777777655433221 1 1278888888764322 3 25778888888988876
Q ss_pred cCcceeeeeccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeecccccee--cccC-----ccccCC
Q 045137 147 IELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEI--ISVG-----KIAENP 219 (312)
Q Consensus 147 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~--~~~~-----~~~~~~ 219 (312)
.++.++. ..++|++|++++| .+..+|.++.+++|++|++++|...... .... ....+.
T Consensus 164 -~l~~lp~-------------~~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 164 -SLKKLPD-------------LPPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE 228 (454)
T ss_dssp -CCSCCCC-------------CCTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS
T ss_pred -cCcccCC-------------CcccccEEECcCC-cCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC
Confidence 4443321 3468888888888 6777777788888888888877533210 0000 000001
Q ss_pred CCCCCCccCCCcCeeeccccccccccccCCcCCCCccEEEecCCCCCCCCCC
Q 045137 220 EMMGHISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACDQLRKLPL 271 (312)
Q Consensus 220 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 271 (312)
.+. ....+++|++|+++++ .++.++. .+++|+.|+++++ +++.+|.
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N-~l~~l~~ 274 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN-YLTDLPE 274 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS-CCSCCCC
T ss_pred ccc-ccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCC-cccccCc
Confidence 111 2345666666666664 3443321 2466777777664 4555554
No 79
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=2.1e-15 Score=141.85 Aligned_cols=165 Identities=20% Similarity=0.209 Sum_probs=109.5
Q ss_pred CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
+|++++|.+..+| +++.+++|+.|+|++| .+..+++ +..+++|++|++++|.+.. +..+
T Consensus 47 ~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~-----------------l~~l 105 (605)
T 1m9s_A 47 QIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKD-----------------LSSL 105 (605)
T ss_dssp CCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCC-----------------CTTS
T ss_pred EEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCCC-----------------Chhh
Confidence 3567777777775 5777777777777777 6666665 7777777777777776632 2356
Q ss_pred cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137 81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV 160 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 160 (312)
..+++|+.|+++.+....++.+..++ +|+.|+++++.... + ..+..+++|+.|+++++ .+..+.. +.
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l~~l~~l~----~L~~L~Ls~N~l~~---l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~-- 172 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDINGLVHLP----QLESLYLGNNKITD---I-TVLSRLTKLDTLSLEDN-QISDIVP--LA-- 172 (605)
T ss_dssp TTCTTCCEEECTTSCCCCCGGGGGCT----TCSEEECCSSCCCC---C-GGGGSCTTCSEEECCSS-CCCCCGG--GT--
T ss_pred ccCCCCCEEEecCCCCCCCccccCCC----ccCEEECCCCccCC---c-hhhcccCCCCEEECcCC-cCCCchh--hc--
Confidence 66777777777766555555555555 67777777653222 1 45667777777777765 4443322 22
Q ss_pred cccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccc
Q 045137 161 RKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAME 207 (312)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~ 207 (312)
.+++|+.|+|++| .+.+++.+..+++|+.|++++|....
T Consensus 173 -------~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 173 -------GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -------TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred -------cCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCcCcC
Confidence 6777777777777 66667777777777777777765433
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=2.4e-15 Score=129.14 Aligned_cols=200 Identities=19% Similarity=0.117 Sum_probs=148.0
Q ss_pred HhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEec
Q 045137 15 ELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLG 94 (312)
Q Consensus 15 ~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~ 94 (312)
.++++++++.++++++ .+..+|.+ +. +++++|++++|.+.. .....+..+.+|+.|+++.+
T Consensus 5 ~~~~l~~l~~l~~~~~-~l~~ip~~-~~--~~l~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~L~~n 65 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKR-NLTALPPD-LP--KDTTILHLSENLLYT---------------FSLATLMPYTRLTQLNLDRA 65 (290)
T ss_dssp EEECSTTCCEEECTTS-CCSSCCSC-CC--TTCCEEECTTSCCSE---------------EEGGGGTTCTTCCEEECTTS
T ss_pred cccccCCccEEECCCC-CCCcCCCC-CC--CCCCEEEcCCCcCCc---------------cCHHHhhcCCCCCEEECCCC
Confidence 3677899999999998 88899876 43 689999999998854 33456778888999998876
Q ss_pred ChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccce
Q 045137 95 SYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHL 174 (312)
Q Consensus 95 ~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 174 (312)
....++....++ +|+.|++++..-. .++..+..+++|++|+++++ .++.++...+. .+++|++
T Consensus 66 ~l~~~~~~~~l~----~L~~L~Ls~N~l~---~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~---------~l~~L~~ 128 (290)
T 1p9a_G 66 ELTKLQVDGTLP----VLGTLDLSHNQLQ---SLPLLGQTLPALTVLDVSFN-RLTSLPLGALR---------GLGELQE 128 (290)
T ss_dssp CCCEEECCSCCT----TCCEEECCSSCCS---SCCCCTTTCTTCCEEECCSS-CCCCCCSSTTT---------TCTTCCE
T ss_pred ccCcccCCCCCC----cCCEEECCCCcCC---cCchhhccCCCCCEEECCCC-cCcccCHHHHc---------CCCCCCE
Confidence 654444334444 7889998876432 33346778889999999876 66666544443 7899999
Q ss_pred EeecCCCCcccCC--ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccccccccCCcCC
Q 045137 175 VTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWKPLPF 252 (312)
Q Consensus 175 L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 252 (312)
|++++| .+..++ .+..+++|+.|++++|... .+.. .....+++|++|+++++ .++.++......
T Consensus 129 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~-----------~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~ 194 (290)
T 1p9a_G 129 LYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA-----------GLLNGLENLDTLLLQEN-SLYTIPKGFFGS 194 (290)
T ss_dssp EECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCS-CCCT-----------TTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred EECCCC-CCCccChhhcccccCCCEEECCCCcCC-ccCH-----------HHhcCcCCCCEEECCCC-cCCccChhhccc
Confidence 999998 777766 4678999999999888643 3211 12356788999999885 688887777778
Q ss_pred CCccEEEecCCC
Q 045137 253 THLKEMGVRACD 264 (312)
Q Consensus 253 ~~L~~L~i~~c~ 264 (312)
+.|+.+.+.+.+
T Consensus 195 ~~L~~l~L~~Np 206 (290)
T 1p9a_G 195 HLLPFAFLHGNP 206 (290)
T ss_dssp CCCSEEECCSCC
T ss_pred ccCCeEEeCCCC
Confidence 889999988643
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.60 E-value=5.3e-15 Score=139.38 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=40.1
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY 61 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~ 61 (312)
|+++++.++.+|..+. ++|++|++++| .+..+|. .+++|++|++++|.+..+|
T Consensus 45 L~ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~l~~lp 97 (622)
T 3g06_A 45 LNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLP 97 (622)
T ss_dssp EECCSSCCSCCCSCCC--TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCCCSCCC
T ss_pred EEecCCCcCccChhhC--CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCcCCcCC
Confidence 6778888888886665 78888888888 7777776 4678888888888776543
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=4.6e-15 Score=127.43 Aligned_cols=164 Identities=20% Similarity=0.216 Sum_probs=128.5
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
|++++|.+..+| +++.+++|++|++++| .+..+++ +.++++|++|++++|.+.. +..+.
T Consensus 51 L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~~~l~ 109 (291)
T 1h6t_A 51 IIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKD-----------------LSSLK 109 (291)
T ss_dssp EECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC-----------------GGGGT
T ss_pred EEccCCCcccCh-hHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCCC-----------------Chhhc
Confidence 678888888886 5888999999999999 7888776 8899999999999987742 34577
Q ss_pred CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137 82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR 161 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 161 (312)
.+++|+.|+++.+....++.+..++ +|+.|+++++.... + ..+..+++|+.|+++++ .+..+.. +.
T Consensus 110 ~l~~L~~L~L~~n~i~~~~~l~~l~----~L~~L~l~~n~l~~---~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~--- 175 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDINGLVHLP----QLESLYLGNNKITD---I-TVLSRLTKLDTLSLEDN-QISDIVP--LA--- 175 (291)
T ss_dssp TCTTCCEEECTTSCCCCCGGGGGCT----TCCEEECCSSCCCC---C-GGGGGCTTCSEEECCSS-CCCCCGG--GT---
T ss_pred cCCCCCEEECCCCcCCCChhhcCCC----CCCEEEccCCcCCc---c-hhhccCCCCCEEEccCC-ccccchh--hc---
Confidence 8888999998877666666666666 88899888764322 2 56778889999999876 5554432 32
Q ss_pred ccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccc
Q 045137 162 KRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAME 207 (312)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~ 207 (312)
.+++|++|++++| .+++++.+..+++|+.|++++|....
T Consensus 176 ------~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 176 ------GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ------TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred ------CCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCcccC
Confidence 7889999999998 78888888889999999998886433
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=3.2e-15 Score=125.56 Aligned_cols=146 Identities=18% Similarity=0.237 Sum_probs=91.2
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
++++++.++.+|.++. ++|++|++++| .+..+++..+.++++|++|++++|.+.. .....+.
T Consensus 19 l~~~~~~l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~~~ 80 (251)
T 3m19_A 19 VDCQGKSLDSVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQT---------------LSAGVFD 80 (251)
T ss_dssp EECTTCCCSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCC---------------CCTTTTT
T ss_pred EecCCCCccccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCc---------------cCHhHhc
Confidence 6788889999997665 68999999999 7888877668999999999999998854 2234456
Q ss_pred CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137 82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR 161 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 161 (312)
.+++|+.|+++.+....++ ...+..+++|++|+++++ .+..+....+.
T Consensus 81 ~l~~L~~L~L~~n~l~~~~----------------------------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~--- 128 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLP----------------------------LGVFDHLTQLDKLYLGGN-QLKSLPSGVFD--- 128 (251)
T ss_dssp TCTTCCEEECTTSCCCCCC----------------------------TTTTTTCTTCCEEECCSS-CCCCCCTTTTT---
T ss_pred cCCcCCEEECCCCcccccC----------------------------hhHhcccCCCCEEEcCCC-cCCCcChhHhc---
Confidence 6677777777644332111 023344455555555543 33333322222
Q ss_pred ccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeecc
Q 045137 162 KRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCR 204 (312)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~ 204 (312)
.+++|++|++++| .+..++ .++.+++|++|++++|.
T Consensus 129 ------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 129 ------RLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp ------TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------cCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc
Confidence 4555555555555 444444 34555555555555553
No 84
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=1e-14 Score=137.15 Aligned_cols=182 Identities=18% Similarity=0.203 Sum_probs=141.8
Q ss_pred ccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccC
Q 045137 3 DISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG 82 (312)
Q Consensus 3 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (312)
+++.+.+..++ .+..|.+|+.|++++| .+..++. +..+++|+.|++++|.+..+ ..+..
T Consensus 27 ~l~~~~i~~~~-~~~~L~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~Ls~N~l~~~-----------------~~l~~ 85 (605)
T 1m9s_A 27 NLKKKSVTDAV-TQNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLTDI-----------------KPLTN 85 (605)
T ss_dssp HTTCSCTTSEE-CHHHHTTCCCCBCTTC-CCCCCTT--GGGCTTCCEEECTTSCCCCC-----------------GGGGG
T ss_pred hccCCCccccc-chhcCCCCCEEECcCC-CCCCChH--HccCCCCCEEEeeCCCCCCC-----------------hhhcc
Confidence 45666676654 3678999999999999 8888875 99999999999999988532 22788
Q ss_pred CCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccc
Q 045137 83 LKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRK 162 (312)
Q Consensus 83 L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 162 (312)
+++|+.|+++.+....++.+..++ +|+.|+++++.... + ..+..+++|+.|+++++ .+..+ ..+.
T Consensus 86 l~~L~~L~Ls~N~l~~l~~l~~l~----~L~~L~Ls~N~l~~---l-~~l~~l~~L~~L~Ls~N-~l~~l--~~l~---- 150 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKDLSSLKDLK----KLKSLSLEHNGISD---I-NGLVHLPQLESLYLGNN-KITDI--TVLS---- 150 (605)
T ss_dssp CTTCCEEECCSSCCCCCTTSTTCT----TCCEEECTTSCCCC---C-GGGGGCTTCSEEECCSS-CCCCC--GGGG----
T ss_pred CCCCCEEECcCCCCCCChhhccCC----CCCEEEecCCCCCC---C-ccccCCCccCEEECCCC-ccCCc--hhhc----
Confidence 999999999988776666666666 89999988764322 2 56788899999999976 55544 3333
Q ss_pred cCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccc
Q 045137 163 RREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLP 240 (312)
Q Consensus 163 ~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 240 (312)
.+++|+.|+|++| .+..++.+..+++|+.|+|++|.. ..+ + ....+++|+.|++++++
T Consensus 151 -----~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~i-~~l-~------------~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 151 -----RLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNHI-SDL-R------------ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -----SCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CBC-G------------GGTTCTTCSEEECCSEE
T ss_pred -----ccCCCCEEECcCC-cCCCchhhccCCCCCEEECcCCCC-CCC-h------------HHccCCCCCEEEccCCc
Confidence 7899999999999 777776788999999999998854 332 1 34568899999998864
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=3.4e-14 Score=133.87 Aligned_cols=221 Identities=16% Similarity=0.105 Sum_probs=128.2
Q ss_pred CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
+|+|++|.++.+|. .+++|++|+|++| .+..+|. .+++|++|++++|.+..+|.....+.........+..+
T Consensus 65 ~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~l 136 (622)
T 3g06_A 65 TLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL 136 (622)
T ss_dssp EEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC----CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCC
T ss_pred EEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC----CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcC
Confidence 37888999998886 6889999999999 7888876 57889999999888876654222211110000001111
Q ss_pred c-CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc
Q 045137 81 L-GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI 159 (312)
Q Consensus 81 ~-~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 159 (312)
. .+++|+.|+++.+....++. ...+|+.|.+.++.... + + ..+++|+.|+++++ .+..++......
T Consensus 137 p~~l~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~~---l-~--~~~~~L~~L~Ls~N-~l~~l~~~~~~L 203 (622)
T 3g06_A 137 PVLPPGLQELSVSDNQLASLPA------LPSELCKLWAYNNQLTS---L-P--MLPSGLQELSVSDN-QLASLPTLPSEL 203 (622)
T ss_dssp CCCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSC---C-C--CCCTTCCEEECCSS-CCSCCCCCCTTC
T ss_pred CCCCCCCCEEECcCCcCCCcCC------ccCCCCEEECCCCCCCC---C-c--ccCCCCcEEECCCC-CCCCCCCccchh
Confidence 1 13677788877665433221 12256666666543211 1 1 33456666666654 333322100000
Q ss_pred ---------ccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCC
Q 045137 160 ---------VRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFEN 230 (312)
Q Consensus 160 ---------~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (312)
....+. .+++|+.|++++| .++.+| ..+++|+.|++++|.. ..+ + ..+++
T Consensus 204 ~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~L-~~l-p--------------~~~~~ 262 (622)
T 3g06_A 204 YKLWAYNNRLTSLPA--LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNRL-TSL-P--------------MLPSG 262 (622)
T ss_dssp CEEECCSSCCSSCCC--CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSCC-SCC-C--------------CCCTT
T ss_pred hEEECcCCcccccCC--CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCCC-CcC-C--------------ccccc
Confidence 000111 3466777777766 555555 4456777777776643 222 1 15678
Q ss_pred cCeeeccccccccccccCCcCCCCccEEEecCCC
Q 045137 231 LKSLDLSYLPELKSIFWKPLPFTHLKEMGVRACD 264 (312)
Q Consensus 231 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 264 (312)
|++|+++++ .++.++.....+++|+.|++++++
T Consensus 263 L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 263 LLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 888888886 577776666778888888888764
No 86
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.54 E-value=4.6e-14 Score=133.51 Aligned_cols=111 Identities=12% Similarity=0.076 Sum_probs=81.5
Q ss_pred cccccceEeecCCCCccc-CC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccccccc
Q 045137 168 VFHSLHLVTIYSCHKLKD-ST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSI 245 (312)
Q Consensus 168 ~~~~L~~L~l~~~~~l~~-l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 245 (312)
.++.|+.|++++|..... .| .+..+++|++|++++|.. ..+.+ .....+++|++|+++++ .++.+
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L-~~l~~-----------~~f~~l~~L~~L~Ls~N-~l~~l 533 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSP-----------TAFNSLSSLQVLNMSHN-NFFSL 533 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC-CEECT-----------TTTTTCTTCCEEECTTS-CCCBC
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCcc-CCcCh-----------HHHcCCCCCCEEECCCC-cCCCC
Confidence 568999999999854554 34 688899999999999864 44322 13467899999999996 57776
Q ss_pred ccC-CcCCCCccEEEecCCCCCCCCCCCCccc-cccceEeeehHhhhhh
Q 045137 246 FWK-PLPFTHLKEMGVRACDQLRKLPLDSNSA-KERKFVIRGEEDWWNR 292 (312)
Q Consensus 246 ~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~~-~~~l~~i~~~~~~~~~ 292 (312)
... ...+++|+.|+++++ +++.++...... ..+++.+....|.|.+
T Consensus 534 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 534 DTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred ChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 544 567899999999985 787776655443 3678887655555554
No 87
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=1.6e-14 Score=122.13 Aligned_cols=163 Identities=16% Similarity=0.219 Sum_probs=125.4
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
++++++.++.++ .++.+++|++|++++| .+..+|. +..+++|++|++++|.+..+ ..+.
T Consensus 24 l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~L~~N~i~~~-----------------~~l~ 82 (263)
T 1xeu_A 24 QNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLAG--MQFFTNLKELHLSHNQISDL-----------------SPLK 82 (263)
T ss_dssp HHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCC-----------------GGGT
T ss_pred HHhcCCCccccc-chhhcCcCcEEECcCC-CcccchH--HhhCCCCCEEECCCCccCCC-----------------hhhc
Confidence 567888999888 7899999999999999 8899883 99999999999999988542 1277
Q ss_pred CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137 82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR 161 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 161 (312)
.+++|+.|+++.+....++.+.. . +|+.|+++++.-.. + ..+..+++|+.|+++++ .++.++ .+.
T Consensus 83 ~l~~L~~L~L~~N~l~~l~~~~~-~----~L~~L~L~~N~l~~---~-~~l~~l~~L~~L~Ls~N-~i~~~~--~l~--- 147 (263)
T 1xeu_A 83 DLTKLEELSVNRNRLKNLNGIPS-A----CLSRLFLDNNELRD---T-DSLIHLKNLEILSIRNN-KLKSIV--MLG--- 147 (263)
T ss_dssp TCSSCCEEECCSSCCSCCTTCCC-S----SCCEEECCSSCCSB---S-GGGTTCTTCCEEECTTS-CCCBCG--GGG---
T ss_pred cCCCCCEEECCCCccCCcCcccc-C----cccEEEccCCccCC---C-hhhcCcccccEEECCCC-cCCCCh--HHc---
Confidence 88999999998776655444333 3 78888888764322 2 45778888889998876 455542 232
Q ss_pred ccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccc
Q 045137 162 KRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAME 207 (312)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~ 207 (312)
.+++|+.|++++| .+.+++.+..+++|+.|++++|....
T Consensus 148 ------~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 148 ------FLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ------GCTTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEEEEEC
T ss_pred ------cCCCCCEEECCCC-cCcchHHhccCCCCCEEeCCCCcccC
Confidence 7788899999888 77777778888889999888876433
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=125.81 Aligned_cols=201 Identities=16% Similarity=0.025 Sum_probs=137.7
Q ss_pred CCCCCcEEecCCCCCcc-ccCchhh--hccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEec
Q 045137 18 LLVNLKCLNLRWTGALI-RIPRGLI--SKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLG 94 (312)
Q Consensus 18 ~L~~L~~L~L~~~~~~~-~lp~~~i--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~ 94 (312)
.+++|++|++++| .+. ..|.. + ..+++|++|++++|.+..... ......+..+++|+.|+++.+
T Consensus 89 ~~~~L~~L~l~~n-~l~~~~~~~-~~~~~~~~L~~L~Ls~n~i~~~~~-----------~~~~~~~~~~~~L~~L~Ls~n 155 (310)
T 4glp_A 89 AYSRLKELTLEDL-KITGTMPPL-PLEATGLALSSLRLRNVSWATGRS-----------WLAELQQWLKPGLKVLSIAQA 155 (310)
T ss_dssp HHSCCCEEEEESC-CCBSCCCCC-SSSCCCBCCSSCEEESCCCSSTTS-----------SHHHHHTTBCSCCCEEEEECC
T ss_pred ccCceeEEEeeCC-Eeccchhhh-hhhccCCCCCEEEeecccccchhh-----------hhHHHHhhhccCCCEEEeeCC
Confidence 4577999999999 555 45554 5 889999999999998853110 011133447889999999977
Q ss_pred ChhhHH--HHhhcccccccceEEEEeecCCCccccc--hhhhcCccccceEEeccCcCcceeeee---ccccccccCCCC
Q 045137 95 SYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIID--ATAFTDLNHLNELWIDNGIELEELKID---YTEIVRKRREPF 167 (312)
Q Consensus 95 ~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~l~~l~~~---~~~~~~~~~~~~ 167 (312)
...... .+..++ +|+.|+++++........ ...+..+++|++|+++++ .++.++.. ...
T Consensus 156 ~l~~~~~~~~~~l~----~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~--------- 221 (310)
T 4glp_A 156 HSPAFSCEQVRAFP----ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA--------- 221 (310)
T ss_dssp SSCCCCTTSCCCCT----TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH---------
T ss_pred CcchhhHHHhccCC----CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh---------
Confidence 654332 344555 899999998753332212 123467889999999987 55433321 112
Q ss_pred cccccceEeecCCCCcccC-C-ccCCC---CCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccc
Q 045137 168 VFHSLHLVTIYSCHKLKDS-T-FLAFA---PNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPEL 242 (312)
Q Consensus 168 ~~~~L~~L~l~~~~~l~~l-~-~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 242 (312)
.+++|++|++++| .+... | .++.+ ++|++|++++|... .+ + ...+++|++|+++++ .+
T Consensus 222 ~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~l-p-------------~~~~~~L~~L~Ls~N-~l 284 (310)
T 4glp_A 222 AGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QV-P-------------KGLPAKLRVLDLSSN-RL 284 (310)
T ss_dssp HTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SC-C-------------SCCCSCCSCEECCSC-CC
T ss_pred cCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCCCC-ch-h-------------hhhcCCCCEEECCCC-cC
Confidence 5699999999999 66664 4 45554 79999999988643 33 1 122489999999986 57
Q ss_pred cccccCCcCCCCccEEEecCC
Q 045137 243 KSIFWKPLPFTHLKEMGVRAC 263 (312)
Q Consensus 243 ~~~~~~~~~~~~L~~L~i~~c 263 (312)
+.++. ...+++|+.|++++.
T Consensus 285 ~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 285 NRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CSCCC-TTSCCCCSCEECSST
T ss_pred CCCch-hhhCCCccEEECcCC
Confidence 76643 567899999999874
No 89
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.53 E-value=5.2e-14 Score=128.30 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=78.5
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCcc---ccCCccchhh
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSV---LFGGGEVLIQ 78 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~~~~~~~~~ 78 (312)
|++++|.++.+|.. .++|++|++++| .+..+|. ++++++|++|++++|.+..+|..+..+. ..+-....+.
T Consensus 116 L~l~~n~l~~l~~~---~~~L~~L~L~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~ 189 (454)
T 1jl5_A 116 LLVDNNNLKALSDL---PPLLEYLGVSNN-QLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 189 (454)
T ss_dssp EECCSSCCSCCCSC---CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC
T ss_pred EECCCCccCcccCC---CCCCCEEECcCC-CCCCCcc--cCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc
Confidence 34455555444321 157888888888 6777773 7888888888888887776654432221 1111112233
Q ss_pred hccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137 79 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG 146 (312)
Q Consensus 79 ~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 146 (312)
.+..+++|+.++++.+....++. ...+|+.|+++++.-. .+ +.+..+++|++|+++++
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~n~l~---~l-p~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKKLPD------LPLSLESIVAGNNILE---EL-PELQNLPFLTTIYADNN 247 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSSCCC------CCTTCCEEECCSSCCS---SC-CCCTTCTTCCEEECCSS
T ss_pred cccCCCCCCEEECCCCcCCcCCC------CcCcccEEECcCCcCC---cc-cccCCCCCCCEEECCCC
Confidence 56778888888887665433221 1227888888876432 22 24677888888888875
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=3e-14 Score=115.16 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=76.8
Q ss_pred hCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecCh
Q 045137 17 KLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 96 (312)
Q Consensus 17 ~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~ 96 (312)
+.+++|++|++++| .+..+| + +..+++|++|++++|.+. .+..+..+++|+.|+++.+..
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~l~~n~~~-----------------~~~~l~~l~~L~~L~l~~n~l 100 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-G-IEYAHNIKDLTINNIHAT-----------------NYNPISGLSNLERLRIMGKDV 100 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-T-GGGCTTCSEEEEESCCCS-----------------CCGGGTTCTTCCEEEEECTTC
T ss_pred hhcCCccEEeccCC-CccChH-H-HhcCCCCCEEEccCCCCC-----------------cchhhhcCCCCCEEEeECCcc
Confidence 56778888888888 777777 3 788888888888877552 233555666677777765543
Q ss_pred hh--HHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccce
Q 045137 97 HA--LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHL 174 (312)
Q Consensus 97 ~~--~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 174 (312)
.. ...+..++ +|+.|+++++.... ..+..+..+++|++|+++++..+..++ .+. .+++|+.
T Consensus 101 ~~~~~~~l~~l~----~L~~L~Ls~n~i~~--~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~---------~l~~L~~ 163 (197)
T 4ezg_A 101 TSDKIPNLSGLT----SLTLLDISHSAHDD--SILTKINTLPKVNSIDLSYNGAITDIM--PLK---------TLPELKS 163 (197)
T ss_dssp BGGGSCCCTTCT----TCCEEECCSSBCBG--GGHHHHTTCSSCCEEECCSCTBCCCCG--GGG---------GCSSCCE
T ss_pred CcccChhhcCCC----CCCEEEecCCccCc--HhHHHHhhCCCCCEEEccCCCCccccH--hhc---------CCCCCCE
Confidence 22 22223333 44444444432111 011334444455555554442233221 111 3444555
Q ss_pred EeecCCCCcccCCccCCCCCCceEEEeec
Q 045137 175 VTIYSCHKLKDSTFLAFAPNLKSLSLFKC 203 (312)
Q Consensus 175 L~l~~~~~l~~l~~l~~l~~L~~L~l~~~ 203 (312)
|++++| .+.+++.+..+++|++|++.++
T Consensus 164 L~l~~n-~i~~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 164 LNIQFD-GVHDYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECTTB-CCCCCTTGGGCSSCCEEEECBC
T ss_pred EECCCC-CCcChHHhccCCCCCEEEeeCc
Confidence 555444 3444444444455555554443
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=2.2e-15 Score=133.43 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=40.4
Q ss_pred CcccCCCCCcc-ccHHhhCCCCCcEEecCCCCCccccCc----hhhhccc-cccEEEEecccccc
Q 045137 1 LLDISHTTIRE-LPEELKLLVNLKCLNLRWTGALIRIPR----GLISKFS-RLRVLRMLGTGGFI 59 (312)
Q Consensus 1 ~L~Ls~~~i~~-lp~~i~~L~~L~~L~L~~~~~~~~lp~----~~i~~l~-~L~~L~l~~~~~~~ 59 (312)
|+++++|.++. +|..++..++|++|++++| .+...+. ..+..++ +|++|++++|.+..
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 65 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGF 65 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCH
Confidence 45677787774 4455555556888888888 6777765 4467777 78888888887753
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=4.2e-14 Score=114.29 Aligned_cols=145 Identities=21% Similarity=0.273 Sum_probs=115.7
Q ss_pred CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
+|++++|.+..+| +++.+++|++|++++| .+..++. +..+++|++|++++|.+.. ..+..+
T Consensus 48 ~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~n~l~~---------------~~~~~l 108 (197)
T 4ezg_A 48 YITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNP--ISGLSNLERLRIMGKDVTS---------------DKIPNL 108 (197)
T ss_dssp EEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGG--GTTCTTCCEEEEECTTCBG---------------GGSCCC
T ss_pred EEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchh--hhcCCCCCEEEeECCccCc---------------ccChhh
Confidence 3788999999998 8999999999999999 7777764 9999999999999998853 345667
Q ss_pred cCCCCceEEEEEecChhh--HHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137 81 LGLKYLEVLELTLGSYHA--LQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE 158 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~--~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 158 (312)
..+++|+.|+++.+.... ...+..++ +|+.|+++++...... +.+..+++|++|+++++ .+..+. .+.
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~----~L~~L~L~~n~~i~~~---~~l~~l~~L~~L~l~~n-~i~~~~--~l~ 178 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLP----KVNSIDLSYNGAITDI---MPLKTLPELKSLNIQFD-GVHDYR--GIE 178 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCS----SCCEEECCSCTBCCCC---GGGGGCSSCCEEECTTB-CCCCCT--TGG
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCC----CCCEEEccCCCCcccc---HhhcCCCCCCEEECCCC-CCcChH--Hhc
Confidence 889999999999876654 66777777 8999999987523332 46888999999999986 555543 333
Q ss_pred cccccCCCCcccccceEeecCCCCcc
Q 045137 159 IVRKRREPFVFHSLHLVTIYSCHKLK 184 (312)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~~~~l~ 184 (312)
.+++|++|++++| .+.
T Consensus 179 ---------~l~~L~~L~l~~N-~i~ 194 (197)
T 4ezg_A 179 ---------DFPKLNQLYAFSQ-TIG 194 (197)
T ss_dssp ---------GCSSCCEEEECBC----
T ss_pred ---------cCCCCCEEEeeCc-ccC
Confidence 7899999999998 443
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=4e-15 Score=132.87 Aligned_cols=226 Identities=17% Similarity=0.102 Sum_probs=138.3
Q ss_pred cccCCCCCcc-----ccHHhhCCCCCcEEecCCCCCcc----ccCchh------hhccccccEEEEecccccccccCCCC
Q 045137 2 LDISHTTIRE-----LPEELKLLVNLKCLNLRWTGALI----RIPRGL------ISKFSRLRVLRMLGTGGFIFYEAPED 66 (312)
Q Consensus 2 L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~~~~----~lp~~~------i~~l~~L~~L~l~~~~~~~~~~~~~~ 66 (312)
|+|++|.++. ++..++.+++|++|+|++| .+. .+|.++ +..+++|++|++++|.+....
T Consensus 37 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~----- 110 (386)
T 2ca6_A 37 IVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA----- 110 (386)
T ss_dssp EECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT-----
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH-----
Confidence 5677777653 3334567777888888776 333 233331 256777888888777664210
Q ss_pred ccccCCccchhhhccCCCCceEEEEEecChhhH--HH----Hhhc---------ccccccceEEEEeecCCCccccc---
Q 045137 67 SVLFGGGEVLIQELLGLKYLEVLELTLGSYHAL--QI----LLSS---------NKLKSCIRSLYLYLTGDKKSIID--- 128 (312)
Q Consensus 67 ~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~--~~----l~~l---------~~l~~~L~~L~l~~~~~~~~~~~--- 128 (312)
.......+..+++|+.|+++.+..... .. +..+ + +|+.|+++++... ....
T Consensus 111 ------~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~----~L~~L~L~~n~l~-~~~~~~l 179 (386)
T 2ca6_A 111 ------QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP----PLRSIICGRNRLE-NGSMKEW 179 (386)
T ss_dssp ------HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC----CCCEEECCSSCCT-GGGHHHH
T ss_pred ------HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC----CCcEEECCCCCCC-cHHHHHH
Confidence 012344667788888888887765321 11 2222 3 7888888876432 2222
Q ss_pred hhhhcCccccceEEeccCcCcceee-----eeccccccccCCCCcccccceEeecCCCCcc-----cCC-ccCCCCCCce
Q 045137 129 ATAFTDLNHLNELWIDNGIELEELK-----IDYTEIVRKRREPFVFHSLHLVTIYSCHKLK-----DST-FLAFAPNLKS 197 (312)
Q Consensus 129 ~~~l~~l~~L~~L~l~~~~~l~~l~-----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~-~l~~l~~L~~ 197 (312)
...+..+++|++|+++++ .+...+ ...+. .+++|++|++++| .++ .++ .+..+++|++
T Consensus 180 ~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~---------~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLA---------YCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp HHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGG---------GCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCE
T ss_pred HHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhh---------cCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCE
Confidence 245667788999999876 444211 10222 6789999999988 563 344 6778899999
Q ss_pred EEEeeccccceecccCccccCCCCCCCC--ccCCCcCeeeccccccccc-----cccCC-cCCCCccEEEecCCC
Q 045137 198 LSLFKCRAMEEIISVGKIAENPEMMGHI--SPFENLKSLDLSYLPELKS-----IFWKP-LPFTHLKEMGVRACD 264 (312)
Q Consensus 198 L~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-----~~~~~-~~~~~L~~L~i~~c~ 264 (312)
|++++|........ .+.... +.+++|++|+++++. +.. ++... ..+++|+.|++++|+
T Consensus 249 L~L~~n~i~~~~~~--------~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 249 LGLNDCLLSARGAA--------AVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp EECTTCCCCHHHHH--------HHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred EECCCCCCchhhHH--------HHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 99988864332100 000011 337889999998864 554 43333 457999999998864
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=4e-14 Score=122.65 Aligned_cols=197 Identities=15% Similarity=0.046 Sum_probs=138.1
Q ss_pred CcccCCCCCc-cccHHh--hCCCCCcEEecCCCCCccc-cC---chhhhccccccEEEEecccccccccCCCCccccCCc
Q 045137 1 LLDISHTTIR-ELPEEL--KLLVNLKCLNLRWTGALIR-IP---RGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGG 73 (312)
Q Consensus 1 ~L~Ls~~~i~-~lp~~i--~~L~~L~~L~L~~~~~~~~-lp---~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 73 (312)
+|++++|.+. ..|..+ +.+++|++|++++| .+.. .+ ...+..+++|++|++++|.+..
T Consensus 95 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-------------- 159 (310)
T 4glp_A 95 ELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPA-------------- 159 (310)
T ss_dssp EEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC--------------
T ss_pred EEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcch--------------
Confidence 4788999987 567777 99999999999999 6654 33 1224679999999999998854
Q ss_pred cchhhhccCCCCceEEEEEecChhhHHHH------hhcccccccceEEEEeecCCCccccchh-hhcCccccceEEeccC
Q 045137 74 EVLIQELLGLKYLEVLELTLGSYHALQIL------LSSNKLKSCIRSLYLYLTGDKKSIIDAT-AFTDLNHLNELWIDNG 146 (312)
Q Consensus 74 ~~~~~~l~~L~~L~~l~l~~~~~~~~~~l------~~l~~l~~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~ 146 (312)
.....+..+++|+.|+++.+.......+ ..++ +|+.|+++++.-........ .+..+++|++|+++++
T Consensus 160 -~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~----~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 160 -FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP----AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp -CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC----CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred -hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC----CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 3446678899999999998865332221 3444 78999998875432222212 3467899999999976
Q ss_pred cCcceeeeeccccccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCc
Q 045137 147 IELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHIS 226 (312)
Q Consensus 147 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (312)
.+......... ....+++|++|++++| .++.+|... .++|++|++++|...... ...
T Consensus 235 -~l~~~~p~~~~------~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N~l~~~~--------------~~~ 291 (310)
T 4glp_A 235 -SLRATVNPSAP------RCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSNRLNRAP--------------QPD 291 (310)
T ss_dssp -CCCCCCCSCCS------SCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSCCCCSCC--------------CTT
T ss_pred -CCCccchhhHH------hccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCCcCCCCc--------------hhh
Confidence 55544222111 0003479999999999 777877321 389999999998653321 235
Q ss_pred cCCCcCeeeccccc
Q 045137 227 PFENLKSLDLSYLP 240 (312)
Q Consensus 227 ~~~~L~~L~l~~~~ 240 (312)
.+++|+.|++++++
T Consensus 292 ~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 292 ELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCSCEECSSTT
T ss_pred hCCCccEEECcCCC
Confidence 67999999998864
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=1.1e-13 Score=116.12 Aligned_cols=151 Identities=19% Similarity=0.279 Sum_probs=111.7
Q ss_pred CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
+|+|++|.+..++ ..|+.+++|++|++++| .+..+++..+..+++|++|++++|.+..++ ...
T Consensus 39 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------~~~ 102 (251)
T 3m19_A 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLP---------------LGV 102 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCC---------------TTT
T ss_pred EEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccC---------------hhH
Confidence 3789999999876 67999999999999999 888888877899999999999999886432 334
Q ss_pred ccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc
Q 045137 80 LLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI 159 (312)
Q Consensus 80 l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 159 (312)
+..+++|+.|+++.+... .... ..+..+++|++|+++++ .+..+....+.
T Consensus 103 ~~~l~~L~~L~L~~N~l~---------------------------~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~- 152 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQLK---------------------------SLPS-GVFDRLTKLKELRLNTN-QLQSIPAGAFD- 152 (251)
T ss_dssp TTTCTTCCEEECCSSCCC---------------------------CCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTT-
T ss_pred hcccCCCCEEEcCCCcCC---------------------------CcCh-hHhccCCcccEEECcCC-cCCccCHHHcC-
Confidence 556666666666544321 1111 24566778888888866 56655543333
Q ss_pred ccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeecccc
Q 045137 160 VRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAM 206 (312)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~ 206 (312)
.+++|++|++++| .+..++ .+..+++|++|++.+|...
T Consensus 153 --------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 153 --------KLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp --------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred --------cCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 6788899999888 676765 5777889999998887643
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=3.7e-13 Score=109.60 Aligned_cols=146 Identities=18% Similarity=0.246 Sum_probs=99.8
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
++.+++.++.+|.++ .++|++|++++| .+..+++.+++.+++|++|++++|.+..++ ...+.
T Consensus 12 v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~~~ 73 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLP---------------NGVFN 73 (208)
T ss_dssp EECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCC---------------TTTTT
T ss_pred EEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccC---------------hhhcC
Confidence 456777888888544 569999999999 888888877899999999999999875422 22344
Q ss_pred CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137 82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR 161 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 161 (312)
.+++|+.|+++.+... ... ...+..+++|++|+++++ .+..+....+.
T Consensus 74 ~l~~L~~L~Ls~n~l~---------------------------~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~--- 121 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQ---------------------------SLP-NGVFDKLTQLKELALNTN-QLQSLPDGVFD--- 121 (208)
T ss_dssp TCTTCCEEECCSSCCC---------------------------CCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTT---
T ss_pred CCCCcCEEECCCCcCC---------------------------ccC-HhHhcCccCCCEEEcCCC-cCcccCHhHhc---
Confidence 5556666655433221 111 134566778888888765 45544433332
Q ss_pred ccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeecc
Q 045137 162 KRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCR 204 (312)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~ 204 (312)
.+++|++|++++| .+..++ .++.+++|++|++.+|.
T Consensus 122 ------~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 122 ------KLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp ------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ------cCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 6788888888887 666665 36778888888887774
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=5.4e-13 Score=109.66 Aligned_cols=147 Identities=20% Similarity=0.311 Sum_probs=104.7
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
++++++.++.+|..+. ++|+.|++++| .+..+++..+..+++|++|++++|.+.. .....+.
T Consensus 16 v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~---------------~~~~~~~ 77 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISE---------------LAPDAFQ 77 (220)
T ss_dssp EECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCE---------------ECTTTTT
T ss_pred EEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCC---------------cCHHHhh
Confidence 5678888999987554 78999999999 8888887668999999999999998854 2334556
Q ss_pred CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137 82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR 161 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 161 (312)
.+++|+.|+++.+... .... ..+..+++|++|+++++ .+..+....+.
T Consensus 78 ~l~~L~~L~Ls~N~l~---------------------------~l~~-~~f~~l~~L~~L~L~~N-~l~~~~~~~~~--- 125 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKIT---------------------------ELPK-SLFEGLFSLQLLLLNAN-KINCLRVDAFQ--- 125 (220)
T ss_dssp TCSSCCEEECCSSCCC---------------------------CCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTT---
T ss_pred CCcCCCEEECCCCcCC---------------------------ccCH-hHccCCCCCCEEECCCC-CCCEeCHHHcC---
Confidence 6666666666543321 1111 34566778888888865 55555444443
Q ss_pred ccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccc
Q 045137 162 KRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRA 205 (312)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~ 205 (312)
.+++|++|++++| .++.++ .+..+++|++|++.+++.
T Consensus 126 ------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 126 ------DLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp ------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ------CCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 6788888888888 666665 477788888888887754
No 98
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.39 E-value=7.4e-14 Score=127.35 Aligned_cols=195 Identities=19% Similarity=0.117 Sum_probs=96.7
Q ss_pred cccCCCCCcccc--HHhhCCCCCcEEecCCCCCccc-----cCchhhhccccccEEEEeccccccccc-----C------
Q 045137 2 LDISHTTIRELP--EELKLLVNLKCLNLRWTGALIR-----IPRGLISKFSRLRVLRMLGTGGFIFYE-----A------ 63 (312)
Q Consensus 2 L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~-----~------ 63 (312)
|+|+++.++..+ ..+..+++|++|++++| .+.. ++. ++..+++|++|++++|.+..... .
T Consensus 8 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 85 (461)
T 1z7x_W 8 LDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 85 (461)
T ss_dssp EEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC
T ss_pred hhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCC
Confidence 455666655433 22555666666666666 3442 222 24555666666666555432110 0
Q ss_pred -CCCccccCC--c----cchhhhccCCCCceEEEEEecChhh--HHHHhh-cccccccceEEEEeecCCCccc--cchhh
Q 045137 64 -PEDSVLFGG--G----EVLIQELLGLKYLEVLELTLGSYHA--LQILLS-SNKLKSCIRSLYLYLTGDKKSI--IDATA 131 (312)
Q Consensus 64 -~~~~~~~~~--~----~~~~~~l~~L~~L~~l~l~~~~~~~--~~~l~~-l~~l~~~L~~L~l~~~~~~~~~--~~~~~ 131 (312)
...+...+. . ......+..+++|+.|+++.+.... ...+.. +.....+|++|+++++.-.... .+...
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 000000100 1 1235567778888888888665432 222221 1110115888888876432211 22345
Q ss_pred hcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCccc-----CC-ccCCCCCCceEEEeecc
Q 045137 132 FTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKD-----ST-FLAFAPNLKSLSLFKCR 204 (312)
Q Consensus 132 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~-~l~~l~~L~~L~l~~~~ 204 (312)
+..+++|++|+++++. +.......+.. ... . ..++|++|++++| .++. ++ .+..+++|++|++++|.
T Consensus 166 l~~~~~L~~L~L~~n~-i~~~~~~~l~~--~l~-~-~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 166 LRAKPDFKELTVSNND-INEAGVRVLCQ--GLK-D-SPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHCTTCCEEECCSSB-CHHHHHHHHHH--HHH-H-SCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HhhCCCCCEEECcCCC-cchHHHHHHHH--HHh-c-CCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 6667888888888763 43322221110 000 0 1347777777777 4444 22 34456777777777664
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.39 E-value=2.2e-13 Score=120.60 Aligned_cols=237 Identities=14% Similarity=0.066 Sum_probs=153.5
Q ss_pred CcccCCCCCcccc-----HHhhCCC-CCcEEecCCCCCccccCchhhhcc-----ccccEEEEecccccccccCCCCccc
Q 045137 1 LLDISHTTIRELP-----EELKLLV-NLKCLNLRWTGALIRIPRGLISKF-----SRLRVLRMLGTGGFIFYEAPEDSVL 69 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-----~~i~~L~-~L~~L~L~~~~~~~~lp~~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~ 69 (312)
+|+|++|.++..+ +.++.++ +|++|+|++| .+.......+..+ ++|++|++++|.+...+.
T Consensus 26 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~------- 97 (362)
T 3goz_A 26 SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS------- 97 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-------
T ss_pred EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH-------
Confidence 4789999998776 6788898 9999999999 8887765557765 999999999998864221
Q ss_pred cCCccchhhhccCC-CCceEEEEEecChhh--HHHHhh-cccccccceEEEEeecCCCc--cccchhhhcCcc-ccceEE
Q 045137 70 FGGGEVLIQELLGL-KYLEVLELTLGSYHA--LQILLS-SNKLKSCIRSLYLYLTGDKK--SIIDATAFTDLN-HLNELW 142 (312)
Q Consensus 70 ~~~~~~~~~~l~~L-~~L~~l~l~~~~~~~--~~~l~~-l~~l~~~L~~L~l~~~~~~~--~~~~~~~l~~l~-~L~~L~ 142 (312)
......+..+ ++|+.|+++.+.... ...+.. +..+..+|+.|+++++.-.. ...+...+..++ +|++|+
T Consensus 98 ----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 98 ----DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp ----HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred ----HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 1222335556 789999998776532 222221 11111279999999764321 112234555565 999999
Q ss_pred eccCcCcceeeeeccccccccCCCCcc-cccceEeecCCCCccc-----CC-ccCC-CCCCceEEEeeccccceecccCc
Q 045137 143 IDNGIELEELKIDYTEIVRKRREPFVF-HSLHLVTIYSCHKLKD-----ST-FLAF-APNLKSLSLFKCRAMEEIISVGK 214 (312)
Q Consensus 143 l~~~~~l~~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~-----l~-~l~~-l~~L~~L~l~~~~~~~~~~~~~~ 214 (312)
++++ .+.......+.. ... .+ ++|++|++++| .+.+ ++ .+.. .++|++|++++|........
T Consensus 174 Ls~n-~l~~~~~~~l~~--~l~---~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--- 243 (362)
T 3goz_A 174 LRGN-NLASKNCAELAK--FLA---SIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE--- 243 (362)
T ss_dssp CTTS-CGGGSCHHHHHH--HHH---TSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH---
T ss_pred ecCC-CCchhhHHHHHH--HHH---hCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH---
Confidence 9987 555444322110 000 33 59999999999 6776 33 3434 46999999999864332210
Q ss_pred cccCCCCCCCCccCCCcCeeeccccc-------cccccccCCcCCCCccEEEecCCC
Q 045137 215 IAENPEMMGHISPFENLKSLDLSYLP-------ELKSIFWKPLPFTHLKEMGVRACD 264 (312)
Q Consensus 215 ~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~~~~~~~~~~~L~~L~i~~c~ 264 (312)
.+......+++|++|+++++. .+..+......+++|+.|+++++.
T Consensus 244 -----~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 244 -----NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp -----HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred -----HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 001134567889999999874 133333344567778888888754
No 100
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.39 E-value=4e-13 Score=126.33 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=28.3
Q ss_pred ccCCCcCeeecccccccccccc--CCcCCCCccEEEecCCCCCCC
Q 045137 226 SPFENLKSLDLSYLPELKSIFW--KPLPFTHLKEMGVRACDQLRK 268 (312)
Q Consensus 226 ~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~i~~c~~L~~ 268 (312)
..+++|++|++++|+ ++.... ....+++|+.|++++|. ++.
T Consensus 485 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 456888888888886 443221 13458889999999886 554
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.38 E-value=1.4e-13 Score=122.84 Aligned_cols=200 Identities=16% Similarity=0.104 Sum_probs=136.9
Q ss_pred CcccCCCCCc----cccHHh-------hCCCCCcEEecCCCCCccc-----cCchhhhccccccEEEEecccccccccCC
Q 045137 1 LLDISHTTIR----ELPEEL-------KLLVNLKCLNLRWTGALIR-----IPRGLISKFSRLRVLRMLGTGGFIFYEAP 64 (312)
Q Consensus 1 ~L~Ls~~~i~----~lp~~i-------~~L~~L~~L~L~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 64 (312)
+|+|++|.+. .+|.++ +.+++|++|+|++| .+.. +|.. +..+++|++|++++|.+...+.
T Consensus 64 ~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~-- 139 (386)
T 2ca6_A 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAG-- 139 (386)
T ss_dssp EEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHH--
T ss_pred EEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHH--
Confidence 3678887554 345555 78999999999999 6665 5554 8999999999999998853211
Q ss_pred CCccccCCccchhhhccCC---------CCceEEEEEecChh--hHH----HHhhcccccccceEEEEeecCCCccc--c
Q 045137 65 EDSVLFGGGEVLIQELLGL---------KYLEVLELTLGSYH--ALQ----ILLSSNKLKSCIRSLYLYLTGDKKSI--I 127 (312)
Q Consensus 65 ~~~~~~~~~~~~~~~l~~L---------~~L~~l~l~~~~~~--~~~----~l~~l~~l~~~L~~L~l~~~~~~~~~--~ 127 (312)
......+..+ ++|+.|+++.+... .++ .+..++ +|+.|+++++...... .
T Consensus 140 ---------~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~----~L~~L~L~~n~l~~~g~~~ 206 (386)
T 2ca6_A 140 ---------AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR----LLHTVKMVQNGIRPEGIEH 206 (386)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT----TCCEEECCSSCCCHHHHHH
T ss_pred ---------HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC----CcCEEECcCCCCCHhHHHH
Confidence 0122234444 88999999877553 333 444556 8999999987433111 1
Q ss_pred chh-hhcCccccceEEeccCcCcc-----eeeeeccccccccCCCCcccccceEeecCCCCcccC-----C-cc--CCCC
Q 045137 128 DAT-AFTDLNHLNELWIDNGIELE-----ELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDS-----T-FL--AFAP 193 (312)
Q Consensus 128 ~~~-~l~~l~~L~~L~l~~~~~l~-----~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~-~l--~~l~ 193 (312)
... .+..+++|++|+++++ .+. .+. ..+. .+++|++|++++| .+... + .+ +.++
T Consensus 207 l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~-~~l~---------~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~ 274 (386)
T 2ca6_A 207 LLLEGLAYCQELKVLDLQDN-TFTHLGSSALA-IALK---------SWPNLRELGLNDC-LLSARGAAAVVDAFSKLENI 274 (386)
T ss_dssp HHHTTGGGCTTCCEEECCSS-CCHHHHHHHHH-HHGG---------GCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHhhcCCCccEEECcCC-CCCcHHHHHHH-HHHc---------cCCCcCEEECCCC-CCchhhHHHHHHHHhhccCC
Confidence 223 7778899999999987 443 222 1222 6899999999999 66653 3 44 4499
Q ss_pred CCceEEEeeccccce---ecccCccccCCCCCCCC-ccCCCcCeeeccccc
Q 045137 194 NLKSLSLFKCRAMEE---IISVGKIAENPEMMGHI-SPFENLKSLDLSYLP 240 (312)
Q Consensus 194 ~L~~L~l~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 240 (312)
+|++|++++|..... .++ ... ..+++|++|++++++
T Consensus 275 ~L~~L~L~~n~i~~~g~~~l~-----------~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 275 GLQTLRLQYNEIELDAVRTLK-----------TVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CCCEEECCSSCCBHHHHHHHH-----------HHHHHHCTTCCEEECTTSB
T ss_pred CeEEEECcCCcCCHHHHHHHH-----------HHHHhcCCCceEEEccCCc
Confidence 999999999875442 111 122 347999999999864
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.38 E-value=2.6e-13 Score=110.50 Aligned_cols=146 Identities=20% Similarity=0.273 Sum_probs=99.4
Q ss_pred CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
+|++++|.++.+| ..++.+++|++|++++| .+..+|..++..+++|++|++++|.+..++ ...
T Consensus 32 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------------~~~ 95 (208)
T 2o6s_A 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLP---------------NGV 95 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------TTT
T ss_pred EEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccC---------------HhH
Confidence 4789999999887 45799999999999999 888998887899999999999999886422 233
Q ss_pred ccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc
Q 045137 80 LLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI 159 (312)
Q Consensus 80 l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 159 (312)
+..+++|+.++++.+....+. ...+..+++|++|+++++ .+..+....+.
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~----------------------------~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~- 145 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLP----------------------------DGVFDKLTQLKDLRLYQN-QLKSVPDGVFD- 145 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCC----------------------------TTTTTTCTTCCEEECCSS-CCSCCCTTTTT-
T ss_pred hcCccCCCEEEcCCCcCcccC----------------------------HhHhccCCcCCEEECCCC-ccceeCHHHhc-
Confidence 556667777766544321111 023455667777777764 44444333232
Q ss_pred ccccCCCCcccccceEeecCCCCcccCCccCCCCCCceEEEeecccc
Q 045137 160 VRKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAM 206 (312)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~ 206 (312)
.+++|++|++++| ++.+.+++|+.|+++.+...
T Consensus 146 --------~l~~L~~L~l~~N------~~~~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 146 --------RLTSLQYIWLHDN------PWDCTCPGIRYLSEWINKHS 178 (208)
T ss_dssp --------TCTTCCEEECCSC------CBCCCTTTTHHHHHHHHHCT
T ss_pred --------cCCCccEEEecCC------CeecCCCCHHHHHHHHHhCC
Confidence 5677777777776 22345667777776665443
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=2.6e-13 Score=120.08 Aligned_cols=172 Identities=19% Similarity=0.277 Sum_probs=117.0
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhh-ccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLIS-KFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
++++++.++.+|..+. ..+++|+|++| .+..++...+. ++++|++|++++|.+..+ ....+
T Consensus 23 l~c~~~~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i---------------~~~~~ 84 (361)
T 2xot_A 23 LSCSKQQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFI---------------SSEAF 84 (361)
T ss_dssp EECCSSCCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEE---------------CTTTT
T ss_pred EEeCCCCcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCcc---------------Chhhc
Confidence 5778888999987554 46899999999 88888877676 899999999999988642 23456
Q ss_pred cCCCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137 81 LGLKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE 158 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 158 (312)
..+.+|+.|+++.+....++ .+..+. +|+.|+++++... ... +..+..+++|+.|+++++ .+..++...+.
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----~L~~L~L~~N~i~-~~~-~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~ 157 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQ----ALEVLLLYNNHIV-VVD-RNAFEDMAQLQKLYLSQN-QISRFPVELIK 157 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCT----TCCEEECCSSCCC-EEC-TTTTTTCTTCCEEECCSS-CCCSCCGGGTC
T ss_pred cCCCCCCEEECCCCcCCcCCHHHhCCCc----CCCEEECCCCccc-EEC-HHHhCCcccCCEEECCCC-cCCeeCHHHhc
Confidence 77888888888877654332 244455 7778877765432 221 246777788888888865 55555443321
Q ss_pred cccccCCCCcccccceEeecCCCCcccCC--ccCCCCC--CceEEEeeccc
Q 045137 159 IVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPN--LKSLSLFKCRA 205 (312)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~--L~~L~l~~~~~ 205 (312)
... .+++|+.|++++| .+..++ .+..++. ++.|++.+|+.
T Consensus 158 -----~~~-~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 158 -----DGN-KLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ----------CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred -----Ccc-cCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCCc
Confidence 000 5778888888887 676666 4555665 37788777653
No 104
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.37 E-value=3.8e-14 Score=129.28 Aligned_cols=195 Identities=15% Similarity=0.077 Sum_probs=94.4
Q ss_pred cccCCCCCccc-cHHh-hCCC----CCcEEecCCCCCccc-----cCchhhhccccccEEEEecccccccccC-------
Q 045137 2 LDISHTTIREL-PEEL-KLLV----NLKCLNLRWTGALIR-----IPRGLISKFSRLRVLRMLGTGGFIFYEA------- 63 (312)
Q Consensus 2 L~Ls~~~i~~l-p~~i-~~L~----~L~~L~L~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~------- 63 (312)
|+|++|.+... +..+ ..++ +|++|++++| .+.. ++. .+..+++|++|++++|.+......
T Consensus 61 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 61 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp EECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred EeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 56666666542 2222 3344 5667777666 4442 233 256666666666666655421100
Q ss_pred -----CCCccccCC--cc----chhhhccCCCCceEEEEEecChhh--HHHHhh-cccccccceEEEEeecCCCccc--c
Q 045137 64 -----PEDSVLFGG--GE----VLIQELLGLKYLEVLELTLGSYHA--LQILLS-SNKLKSCIRSLYLYLTGDKKSI--I 127 (312)
Q Consensus 64 -----~~~~~~~~~--~~----~~~~~l~~L~~L~~l~l~~~~~~~--~~~l~~-l~~l~~~L~~L~l~~~~~~~~~--~ 127 (312)
...+..... .. .....+..+++|+.|+++.+.... ...+.. +.....+|+.|+++++.-.... .
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 218 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence 000000000 00 123445556778888877665432 112211 0000116777877766432211 1
Q ss_pred chhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCccc-----CC-ccCCCCCCceEEEe
Q 045137 128 DATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKD-----ST-FLAFAPNLKSLSLF 201 (312)
Q Consensus 128 ~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~-~l~~l~~L~~L~l~ 201 (312)
+...+..+++|++|+++++ .+...+...+.. ... . .+++|++|++++| .++. ++ .+..+++|++|+++
T Consensus 219 l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~--~~~-~-~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls 292 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSN-KLGDVGMAELCP--GLL-H-PSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLA 292 (461)
T ss_dssp HHHHHHHCTTCCEEECCSS-BCHHHHHHHHHH--HHT-S-TTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHHhCCCccEEeccCC-cCChHHHHHHHH--HHh-c-CCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECC
Confidence 2345566777888888765 333322111100 000 0 3567777777777 5554 23 34446677777776
Q ss_pred ecc
Q 045137 202 KCR 204 (312)
Q Consensus 202 ~~~ 204 (312)
+|.
T Consensus 293 ~n~ 295 (461)
T 1z7x_W 293 GNE 295 (461)
T ss_dssp TCC
T ss_pred CCC
Confidence 664
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=3e-12 Score=105.20 Aligned_cols=148 Identities=16% Similarity=0.225 Sum_probs=101.6
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCcccc-CchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRI-PRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~l-p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
++++++.++.+|..+. ..+++|++++| .+..+ +.+++.++++|++|++++|.+..+ ....+
T Consensus 16 l~~s~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i---------------~~~~~ 77 (220)
T 2v70_A 16 VDCSNQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDI---------------EEGAF 77 (220)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEE---------------CTTTT
T ss_pred eEeCCCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEE---------------CHHHh
Confidence 6788888888887553 45689999999 77777 445678899999999998887542 22344
Q ss_pred cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137 81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV 160 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 160 (312)
..+.+|+.|+++.+.. ... ....+..+++|++|+++++ .+..+....+.
T Consensus 78 ~~l~~L~~L~Ls~N~l---------------------------~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-- 126 (220)
T 2v70_A 78 EGASGVNEILLTSNRL---------------------------ENV-QHKMFKGLESLKTLMLRSN-RITCVGNDSFI-- 126 (220)
T ss_dssp TTCTTCCEEECCSSCC---------------------------CCC-CGGGGTTCSSCCEEECTTS-CCCCBCTTSST--
T ss_pred CCCCCCCEEECCCCcc---------------------------Ccc-CHhHhcCCcCCCEEECCCC-cCCeECHhHcC--
Confidence 5555565555543322 111 1135667788888888875 55555444333
Q ss_pred cccCCCCcccccceEeecCCCCcccC-C-ccCCCCCCceEEEeecccc
Q 045137 161 RKRREPFVFHSLHLVTIYSCHKLKDS-T-FLAFAPNLKSLSLFKCRAM 206 (312)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~~ 206 (312)
.+++|++|++++| .++.+ | .+..+++|++|++++|...
T Consensus 127 -------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 127 -------GLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp -------TCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred -------CCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6788999999888 66665 4 6777888999988877643
No 106
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.34 E-value=1e-12 Score=123.52 Aligned_cols=211 Identities=14% Similarity=0.068 Sum_probs=100.5
Q ss_pred cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEE
Q 045137 13 PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELT 92 (312)
Q Consensus 13 p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~ 92 (312)
+..++.+++|+.|+++++ ....+|.. +..+++|++|++++|.+.. ......+..+++|+.|++.
T Consensus 263 ~~~l~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~~--------------~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLET--------------EDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp SSCCCCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCCH--------------HHHHHHHTTCTTCCEEEEE
T ss_pred HHHhhccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCCH--------------HHHHHHHHhCcCCCEEecc
Confidence 345566667777776665 44555553 5666677777776665421 1112334556666666665
Q ss_pred ecCh--hhHHHH-hhcccccccceEEEEee----------cCCCccccchhhhcCccccceEEeccCcCcceeeeecccc
Q 045137 93 LGSY--HALQIL-LSSNKLKSCIRSLYLYL----------TGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI 159 (312)
Q Consensus 93 ~~~~--~~~~~l-~~l~~l~~~L~~L~l~~----------~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 159 (312)
+.. ..++.+ ..++ +|++|++.+ +..............+++|++|++. ++.+.......+..
T Consensus 327 -~~~~~~~l~~~~~~~~----~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 327 -NVIGDRGLEVLAQYCK----QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGT 400 (592)
T ss_dssp -GGGHHHHHHHHHHHCT----TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHH
T ss_pred -CccCHHHHHHHHHhCC----CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHh
Confidence 211 111211 2233 566666663 4333333332333445666666663 33443332222210
Q ss_pred ccccCCCCcccccceEeecC---CCCcccCC-------ccCCCCCCceEEEeeccc-cceecccCccccCCCCCCCCccC
Q 045137 160 VRKRREPFVFHSLHLVTIYS---CHKLKDST-------FLAFAPNLKSLSLFKCRA-MEEIISVGKIAENPEMMGHISPF 228 (312)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~---~~~l~~l~-------~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 228 (312)
.+++|++|++++ |..+++.| .+..+++|++|+++.|.. +.+... ......+
T Consensus 401 --------~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~----------~~~~~~~ 462 (592)
T 3ogk_B 401 --------YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL----------SYIGQYS 462 (592)
T ss_dssp --------HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH----------HHHHHSC
T ss_pred --------hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH----------HHHHHhC
Confidence 356666666652 32444322 133366666666655442 111100 0011235
Q ss_pred CCcCeeecccccccccccc--CCcCCCCccEEEecCCC
Q 045137 229 ENLKSLDLSYLPELKSIFW--KPLPFTHLKEMGVRACD 264 (312)
Q Consensus 229 ~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~i~~c~ 264 (312)
++|++|.++++. +..... ....+++|+.|++++|+
T Consensus 463 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 463 PNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp TTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred ccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 666666666543 332111 12345666666666665
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=1.6e-12 Score=109.92 Aligned_cols=144 Identities=15% Similarity=0.138 Sum_probs=114.7
Q ss_pred CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
+|++++|.+..+| +++.+++|++|++++| .+..+++ +.++++|++|++++|.+..++ .+
T Consensus 45 ~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~l~~l~-----------------~~ 103 (263)
T 1xeu_A 45 NFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNRLKNLN-----------------GI 103 (263)
T ss_dssp EEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSCCSCCT-----------------TC
T ss_pred EEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCccCCcC-----------------cc
Confidence 3789999999998 8999999999999999 8999887 999999999999999886432 22
Q ss_pred cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137 81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV 160 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 160 (312)
.. .+|+.|+++.+....++.+..++ +|+.|+++++.-. . + ..+..+++|+.|+++++ .+..+ ..+.
T Consensus 104 ~~-~~L~~L~L~~N~l~~~~~l~~l~----~L~~L~Ls~N~i~-~--~-~~l~~l~~L~~L~L~~N-~i~~~--~~l~-- 169 (263)
T 1xeu_A 104 PS-ACLSRLFLDNNELRDTDSLIHLK----NLEILSIRNNKLK-S--I-VMLGFLSKLEVLDLHGN-EITNT--GGLT-- 169 (263)
T ss_dssp CC-SSCCEEECCSSCCSBSGGGTTCT----TCCEEECTTSCCC-B--C-GGGGGCTTCCEEECTTS-CCCBC--TTST--
T ss_pred cc-CcccEEEccCCccCCChhhcCcc----cccEEECCCCcCC-C--C-hHHccCCCCCEEECCCC-cCcch--HHhc--
Confidence 33 78999999988776666677777 8999999876432 2 2 46788999999999986 55554 3333
Q ss_pred cccCCCCcccccceEeecCCCCcccCC
Q 045137 161 RKRREPFVFHSLHLVTIYSCHKLKDST 187 (312)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~ 187 (312)
.+++|+.|++++| .+...|
T Consensus 170 -------~l~~L~~L~l~~N-~~~~~~ 188 (263)
T 1xeu_A 170 -------RLKKVNWIDLTGQ-KCVNEP 188 (263)
T ss_dssp -------TCCCCCEEEEEEE-EEECCC
T ss_pred -------cCCCCCEEeCCCC-cccCCc
Confidence 7899999999998 555443
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=1.8e-12 Score=107.23 Aligned_cols=146 Identities=19% Similarity=0.218 Sum_probs=102.4
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
++.+++.+..+|.++. ++|++|+|++| .+..+++..+..+++|++|++++|.+..++ ...+.
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~---------------~~~~~ 85 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALP---------------VGVFD 85 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------TTTTT
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcC---------------hhhcc
Confidence 4667888888887554 89999999999 788876666899999999999999885422 23345
Q ss_pred CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137 82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR 161 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 161 (312)
.+.+|+.|+++.+... ... ...+..+++|++|+++++ .+..++....
T Consensus 86 ~l~~L~~L~Ls~N~l~---------------------------~l~-~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~---- 132 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLT---------------------------VLP-SAVFDRLVHLKELFMCCN-KLTELPRGIE---- 132 (229)
T ss_dssp TCTTCCEEECCSSCCC---------------------------CCC-TTTTTTCTTCCEEECCSS-CCCSCCTTGG----
T ss_pred cCCCcCEEECCCCcCC---------------------------ccC-hhHhCcchhhCeEeccCC-cccccCcccc----
Confidence 5666666666543321 111 134566778888888865 5555543332
Q ss_pred ccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccc
Q 045137 162 KRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRA 205 (312)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~ 205 (312)
.+++|++|++++| .+..++ .+..+++|+.|++.+++.
T Consensus 133 ------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 133 ------RLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp ------GCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ------cCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 6788888888888 777766 467788888888887764
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.31 E-value=3.7e-12 Score=118.75 Aligned_cols=180 Identities=14% Similarity=0.024 Sum_probs=83.0
Q ss_pred CCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhhHH
Q 045137 21 NLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ 100 (312)
Q Consensus 21 ~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~ 100 (312)
+|++|++++| .+..+|.. + +++|++|++++|.+..+| ..+++|+.|+++.+....++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~-l--~~~L~~L~Ls~N~l~~ip-------------------~~l~~L~~L~Ls~N~l~~ip 116 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDN-L--PPQITVLEITQNALISLP-------------------ELPASLEYLDACDNRLSTLP 116 (571)
T ss_dssp TCSEEECCSS-CCSCCCSC-C--CTTCSEEECCSSCCSCCC-------------------CCCTTCCEEECCSSCCSCCC
T ss_pred CccEEEeCCC-CCCccCHh-H--cCCCCEEECcCCCCcccc-------------------cccCCCCEEEccCCCCCCcc
Confidence 5666666665 45555554 2 245666666665553211 22345555555544433322
Q ss_pred HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCC
Q 045137 101 ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSC 180 (312)
Q Consensus 101 ~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 180 (312)
. +. .+|+.|+++++.... ++. .+++|+.|+++++ .++.++. .+++|+.|++++|
T Consensus 117 ~---l~---~~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N-~l~~lp~-------------~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 117 E---LP---ASLKHLDVDNNQLTM---LPE---LPALLEYINADNN-QLTMLPE-------------LPTSLEVLSVRNN 170 (571)
T ss_dssp C---CC---TTCCEEECCSSCCSC---CCC---CCTTCCEEECCSS-CCSCCCC-------------CCTTCCEEECCSS
T ss_pred h---hh---cCCCEEECCCCcCCC---CCC---cCccccEEeCCCC-ccCcCCC-------------cCCCcCEEECCCC
Confidence 2 11 145555555542211 111 3455666666544 3332221 2456666666666
Q ss_pred CCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCC-CccCCCcCeeeccccccccccccCCcCCCCccEEE
Q 045137 181 HKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGH-ISPFENLKSLDLSYLPELKSIFWKPLPFTHLKEMG 259 (312)
Q Consensus 181 ~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 259 (312)
.++.+|.+. ++|++|++++|... .+ + .+... ....+.|+.|+++++ .++.++.....+++|+.|+
T Consensus 171 -~L~~lp~l~--~~L~~L~Ls~N~L~-~l-p--------~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~ 236 (571)
T 3cvr_A 171 -QLTFLPELP--ESLEALDVSTNLLE-SL-P--------AVPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTII 236 (571)
T ss_dssp -CCSCCCCCC--TTCCEEECCSSCCS-SC-C--------CCC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEE
T ss_pred -CCCCcchhh--CCCCEEECcCCCCC-ch-h--------hHHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEE
Confidence 455555432 56666666655322 21 1 00000 000111266666553 4555554444566666666
Q ss_pred ecCC
Q 045137 260 VRAC 263 (312)
Q Consensus 260 i~~c 263 (312)
++++
T Consensus 237 L~~N 240 (571)
T 3cvr_A 237 LEDN 240 (571)
T ss_dssp CCSS
T ss_pred eeCC
Confidence 6654
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=7.5e-15 Score=137.21 Aligned_cols=208 Identities=13% Similarity=0.023 Sum_probs=128.4
Q ss_pred hCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccc-cccccCCCCccccCCccchhhhccCCCCceEEE-EEec
Q 045137 17 KLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGG-FIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLE-LTLG 94 (312)
Q Consensus 17 ~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~-l~~~ 94 (312)
...++|+.|+|++| .+..+|.. +++|++|+.|++++|.. ..++.-... .......+..++.+++|+.++ ++.+
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~---~~~~~~~~~~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSE-LESCKELQELEPENKWCLLTIILLMRA---LDPLLYEKETLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHH---HCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred ccCccceeccCChh-hHHhhHHH-HHHHHHHHHhccccchhhhhHHHHHHh---cccccCCHHHHHHHHhcccCcchhhc
Confidence 45677778888887 67777776 77888888877755431 000000000 000112233444455555444 2222
Q ss_pred ChhhHH-------HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCC
Q 045137 95 SYHALQ-------ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPF 167 (312)
Q Consensus 95 ~~~~~~-------~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 167 (312)
....++ .+..++. ..++.|+++++.-.. + +.++.+++|+.|+++++ .+..++....
T Consensus 421 ~~~~L~~l~l~~n~i~~l~~--~~L~~L~Ls~n~l~~---l-p~~~~l~~L~~L~Ls~N-~l~~lp~~~~---------- 483 (567)
T 1dce_A 421 YLDDLRSKFLLENSVLKMEY--ADVRVLHLAHKDLTV---L-CHLEQLLLVTHLDLSHN-RLRALPPALA---------- 483 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TTCSEEECTTSCCSS---C-CCGGGGTTCCEEECCSS-CCCCCCGGGG----------
T ss_pred ccchhhhhhhhcccccccCc--cCceEEEecCCCCCC---C-cCccccccCcEeecCcc-cccccchhhh----------
Confidence 211111 1112111 157888888763322 3 23888999999999976 5666554332
Q ss_pred cccccceEeecCCCCcccCCccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccccccccc
Q 045137 168 VFHSLHLVTIYSCHKLKDSTFLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFW 247 (312)
Q Consensus 168 ~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 247 (312)
.+++|+.|++++| .++.+|.++.+++|+.|++++|.......+ .....+++|+.|+++++ .++..+.
T Consensus 484 ~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p-----------~~l~~l~~L~~L~L~~N-~l~~~~~ 550 (567)
T 1dce_A 484 ALRCLEVLQASDN-ALENVDGVANLPRLQELLLCNNRLQQSAAI-----------QPLVSCPRLVLLNLQGN-SLCQEEG 550 (567)
T ss_dssp GCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSCCCSSSTT-----------GGGGGCTTCCEEECTTS-GGGGSSS
T ss_pred cCCCCCEEECCCC-CCCCCcccCCCCCCcEEECCCCCCCCCCCc-----------HHHhcCCCCCEEEecCC-cCCCCcc
Confidence 7899999999999 788889899999999999998864332101 24567899999999986 4666554
Q ss_pred CC----cCCCCccEEE
Q 045137 248 KP----LPFTHLKEMG 259 (312)
Q Consensus 248 ~~----~~~~~L~~L~ 259 (312)
.. ..+|+|+.|+
T Consensus 551 ~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 551 IQERLAEMLPSVSSIL 566 (567)
T ss_dssp CTTHHHHHCTTCSEEE
T ss_pred HHHHHHHHCcccCccC
Confidence 32 2378888875
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=2.1e-13 Score=127.44 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=44.7
Q ss_pred cccccceEeecCCCCcccCC-ccCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccccccc-
Q 045137 168 VFHSLHLVTIYSCHKLKDST-FLAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSI- 245 (312)
Q Consensus 168 ~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~- 245 (312)
.+++|+.|++++| .++.+| .++.+++|+.|++++|.... + + ..+.+++|+.|+++++ .++.+
T Consensus 461 ~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~-l-p------------~l~~l~~L~~L~Ls~N-~l~~~~ 524 (567)
T 1dce_A 461 QLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALEN-V-D------------GVANLPRLQELLLCNN-RLQQSA 524 (567)
T ss_dssp GGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCC-C-G------------GGTTCSSCCEEECCSS-CCCSSS
T ss_pred ccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCC-C-c------------ccCCCCCCcEEECCCC-CCCCCC
Confidence 5556666666665 455555 45556666666665554221 1 1 2244556666666553 34444
Q ss_pred -ccCCcCCCCccEEEecCCCCCCCCC
Q 045137 246 -FWKPLPFTHLKEMGVRACDQLRKLP 270 (312)
Q Consensus 246 -~~~~~~~~~L~~L~i~~c~~L~~l~ 270 (312)
+.....+++|+.|+++++ .++.+|
T Consensus 525 ~p~~l~~l~~L~~L~L~~N-~l~~~~ 549 (567)
T 1dce_A 525 AIQPLVSCPRLVLLNLQGN-SLCQEE 549 (567)
T ss_dssp TTGGGGGCTTCCEEECTTS-GGGGSS
T ss_pred CcHHHhcCCCCCEEEecCC-cCCCCc
Confidence 333445666666666653 344444
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.21 E-value=1.4e-11 Score=114.79 Aligned_cols=172 Identities=17% Similarity=0.117 Sum_probs=123.0
Q ss_pred CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
+|+|++|.++.+|..+ +++|++|+|++| .+..+| ..+++|++|++++|.+..+|. +
T Consensus 63 ~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-----------------l 118 (571)
T 3cvr_A 63 ELQLNRLNLSSLPDNL--PPQITVLEITQN-ALISLP----ELPASLEYLDACDNRLSTLPE-----------------L 118 (571)
T ss_dssp EEECCSSCCSCCCSCC--CTTCSEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCCC-----------------C
T ss_pred EEEeCCCCCCccCHhH--cCCCCEEECcCC-CCcccc----cccCCCCEEEccCCCCCCcch-----------------h
Confidence 3789999999999766 489999999999 888888 347899999999998865331 2
Q ss_pred cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137 81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV 160 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 160 (312)
.. +|+.|+++.+....++. .++ +|+.|+++++.... ++. .+++|++|+++++ .+..++. +
T Consensus 119 ~~--~L~~L~Ls~N~l~~lp~--~l~----~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N-~L~~lp~--l--- 178 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQLTMLPE--LPA----LLEYINADNNQLTM---LPE---LPTSLEVLSVRNN-QLTFLPE--L--- 178 (571)
T ss_dssp CT--TCCEEECCSSCCSCCCC--CCT----TCCEEECCSSCCSC---CCC---CCTTCCEEECCSS-CCSCCCC--C---
T ss_pred hc--CCCEEECCCCcCCCCCC--cCc----cccEEeCCCCccCc---CCC---cCCCcCEEECCCC-CCCCcch--h---
Confidence 22 78888888776655443 334 78999988764322 212 4678999999876 5555443 2
Q ss_pred cccCCCCcccccceEeecCCCCcccCCccCCCCCC-------ceEEEeeccccceecccCccccCCCCCCCCccCCCcCe
Q 045137 161 RKRREPFVFHSLHLVTIYSCHKLKDSTFLAFAPNL-------KSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKS 233 (312)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 233 (312)
. ++|+.|++++| .++.+|.+.. +| +.|++++|... .+ + .....+++|+.
T Consensus 179 -------~-~~L~~L~Ls~N-~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~-~l-p-----------~~l~~l~~L~~ 234 (571)
T 3cvr_A 179 -------P-ESLEALDVSTN-LLESLPAVPV--RNHHSEETEIFFRCRENRIT-HI-P-----------ENILSLDPTCT 234 (571)
T ss_dssp -------C-TTCCEEECCSS-CCSSCCCCC----------CCEEEECCSSCCC-CC-C-----------GGGGGSCTTEE
T ss_pred -------h-CCCCEEECcCC-CCCchhhHHH--hhhcccccceEEecCCCcce-ec-C-----------HHHhcCCCCCE
Confidence 4 78999999998 7777776333 66 99999888643 22 1 13345889999
Q ss_pred eeccccc
Q 045137 234 LDLSYLP 240 (312)
Q Consensus 234 L~l~~~~ 240 (312)
|++++++
T Consensus 235 L~L~~N~ 241 (571)
T 3cvr_A 235 IILEDNP 241 (571)
T ss_dssp EECCSSS
T ss_pred EEeeCCc
Confidence 9998864
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.20 E-value=5.9e-12 Score=111.29 Aligned_cols=148 Identities=21% Similarity=0.164 Sum_probs=110.2
Q ss_pred CcccCCCCCcccc-HHhh-CCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhh
Q 045137 1 LLDISHTTIRELP-EELK-LLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQ 78 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~-~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (312)
+|+|++|.++.++ ..+. .+++|++|+|++| .+..+++..+.++++|++|++++|.+..+ ...
T Consensus 43 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~ 106 (361)
T 2xot_A 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTL---------------DEF 106 (361)
T ss_dssp EEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEE---------------CTT
T ss_pred EEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcC---------------CHH
Confidence 3789999999987 4466 9999999999999 89999877799999999999999988653 234
Q ss_pred hccCCCCceEEEEEecChhhH--HHHhhcccccccceEEEEeecCCCccccchhhh---cCccccceEEeccCcCcceee
Q 045137 79 ELLGLKYLEVLELTLGSYHAL--QILLSSNKLKSCIRSLYLYLTGDKKSIIDATAF---TDLNHLNELWIDNGIELEELK 153 (312)
Q Consensus 79 ~l~~L~~L~~l~l~~~~~~~~--~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~l~~l~ 153 (312)
.+..+.+|+.|+++.+....+ ..+..++ +|+.|+++++.-.. ... ..+ ..+++|+.|+++++ .+..++
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~----~L~~L~L~~N~l~~-l~~-~~~~~~~~l~~L~~L~L~~N-~l~~l~ 179 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMA----QLQKLYLSQNQISR-FPV-ELIKDGNKLPKLMLLDLSSN-KLKKLP 179 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCT----TCCEEECCSSCCCS-CCG-GGTC----CTTCCEEECCSS-CCCCCC
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcc----cCCEEECCCCcCCe-eCH-HHhcCcccCCcCCEEECCCC-CCCccC
Confidence 567889999999987766433 2455566 89999998764322 211 223 56889999999976 666665
Q ss_pred eeccccccccCCCCcccc--cceEeecCC
Q 045137 154 IDYTEIVRKRREPFVFHS--LHLVTIYSC 180 (312)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~--L~~L~l~~~ 180 (312)
...+. .++. ++.|++.+|
T Consensus 180 ~~~~~---------~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 180 LTDLQ---------KLPAWVKNGLYLHNN 199 (361)
T ss_dssp HHHHH---------HSCHHHHTTEECCSS
T ss_pred HHHhh---------hccHhhcceEEecCC
Confidence 44443 4555 478888887
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.19 E-value=2.1e-11 Score=100.78 Aligned_cols=125 Identities=22% Similarity=0.256 Sum_probs=91.1
Q ss_pred CcccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 1 LLDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 1 ~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
+|+|++|.+..+ |..|+.+++|++|+|++| .+..+|..++..+++|++|++++|.+..++ ...
T Consensus 44 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~---------------~~~ 107 (229)
T 3e6j_A 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLP---------------SAV 107 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------TTT
T ss_pred EEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccC---------------hhH
Confidence 478999999987 588999999999999999 889999887899999999999999886422 233
Q ss_pred ccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccc
Q 045137 80 LLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEI 159 (312)
Q Consensus 80 l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 159 (312)
+..+.+|+.|+++.+... .++..+..+++|++|+++++ .+..+....+.
T Consensus 108 ~~~l~~L~~L~Ls~N~l~-----------------------------~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~- 156 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLT-----------------------------ELPRGIERLTHLTHLALDQN-QLKSIPHGAFD- 156 (229)
T ss_dssp TTTCTTCCEEECCSSCCC-----------------------------SCCTTGGGCTTCSEEECCSS-CCCCCCTTTTT-
T ss_pred hCcchhhCeEeccCCccc-----------------------------ccCcccccCCCCCEEECCCC-cCCccCHHHHh-
Confidence 456666776666544321 11234566677777887765 55555443333
Q ss_pred ccccCCCCcccccceEeecCC
Q 045137 160 VRKRREPFVFHSLHLVTIYSC 180 (312)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~~ 180 (312)
.+++|+.|++.+|
T Consensus 157 --------~l~~L~~L~l~~N 169 (229)
T 3e6j_A 157 --------RLSSLTHAYLFGN 169 (229)
T ss_dssp --------TCTTCCEEECTTS
T ss_pred --------CCCCCCEEEeeCC
Confidence 6778888888777
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=6.4e-11 Score=92.80 Aligned_cols=131 Identities=17% Similarity=0.265 Sum_probs=86.2
Q ss_pred hCCCCCcEEecCCCCCcc--ccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEec
Q 045137 17 KLLVNLKCLNLRWTGALI--RIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLG 94 (312)
Q Consensus 17 ~~L~~L~~L~L~~~~~~~--~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~ 94 (312)
...++|++|++++| .+. .+|.. +..+++|++|++++|.+.. +..+..+++|+.|+++.+
T Consensus 21 ~~~~~L~~L~l~~n-~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~-----------------~~~~~~l~~L~~L~Ls~N 81 (168)
T 2ell_A 21 RTPAAVRELVLDNC-KSNDGKIEGL-TAEFVNLEFLSLINVGLIS-----------------VSNLPKLPKLKKLELSEN 81 (168)
T ss_dssp SCTTSCSEEECCSC-BCBTTBCSSC-CGGGGGCCEEEEESSCCCC-----------------CSSCCCCSSCCEEEEESC
T ss_pred CCcccCCEEECCCC-CCChhhHHHH-HHhCCCCCEEeCcCCCCCC-----------------hhhhccCCCCCEEECcCC
Confidence 45689999999999 677 78875 8999999999999998742 155666677777777655
Q ss_pred ChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeee-eccccccccCCCCcccccc
Q 045137 95 SYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKI-DYTEIVRKRREPFVFHSLH 173 (312)
Q Consensus 95 ~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~~~~~~~L~ 173 (312)
.... . .+..+..+++|++|+++++ .+..++. ..+. .+++|+
T Consensus 82 ~l~~--------------------------~--~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~---------~l~~L~ 123 (168)
T 2ell_A 82 RIFG--------------------------G--LDMLAEKLPNLTHLNLSGN-KLKDISTLEPLK---------KLECLK 123 (168)
T ss_dssp CCCS--------------------------C--CCHHHHHCTTCCEEECBSS-SCCSSGGGGGGS---------SCSCCC
T ss_pred cCch--------------------------H--HHHHHhhCCCCCEEeccCC-ccCcchhHHHHh---------cCCCCC
Confidence 4322 0 1123344566666666655 3443321 2222 567777
Q ss_pred eEeecCCCCcccCC-----ccCCCCCCceEEEeeccc
Q 045137 174 LVTIYSCHKLKDST-----FLAFAPNLKSLSLFKCRA 205 (312)
Q Consensus 174 ~L~l~~~~~l~~l~-----~l~~l~~L~~L~l~~~~~ 205 (312)
+|++++| .+..++ .+..+++|++|++.+|..
T Consensus 124 ~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 124 SLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 7777777 555544 356677788887777754
No 116
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.16 E-value=6.9e-12 Score=117.93 Aligned_cols=209 Identities=14% Similarity=0.127 Sum_probs=104.2
Q ss_pred ccHHhhCCCCCcEEecCCCCCcccc-CchhhhccccccEEEEecccccccccCCCCccccCCccchhhh-ccCCCCceEE
Q 045137 12 LPEELKLLVNLKCLNLRWTGALIRI-PRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE-LLGLKYLEVL 89 (312)
Q Consensus 12 lp~~i~~L~~L~~L~L~~~~~~~~l-p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~l 89 (312)
+|..+..+++|++|++++|. +..- ...++..+++|++|++.+| +.. ..+.. ...+++|+.|
T Consensus 281 l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~---------------~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IED---------------AGLEVLASTCKDLREL 343 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHH---------------HHHHHHHHHCTTCCEE
T ss_pred HHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCH---------------HHHHHHHHhCCCCCEE
Confidence 44444456677777777663 4321 1222456667777777666 221 11221 2235566666
Q ss_pred EEEe---------cCh--hhHHHHh-hcccccccceEEEEeecCCCccccchhhhcCccccceEEec-----cCcCccee
Q 045137 90 ELTL---------GSY--HALQILL-SSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWID-----NGIELEEL 152 (312)
Q Consensus 90 ~l~~---------~~~--~~~~~l~-~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~-----~~~~l~~l 152 (312)
++.. +.. ..+..+. .++ +|+.|.+. +..............+++|+.|++. +|+.++..
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~----~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCP----KLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHHHHHCT----TCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred EEecCcccccccCCCCCHHHHHHHHHhch----hHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 6632 111 1122221 233 56666443 2233332221222245667777776 33444422
Q ss_pred eee----c-cccccccCCCCcccccceEeecCCCCccc--CCccCC-CCCCceEEEeeccccceecccCccccCCCCCCC
Q 045137 153 KID----Y-TEIVRKRREPFVFHSLHLVTIYSCHKLKD--STFLAF-APNLKSLSLFKCRAMEEIISVGKIAENPEMMGH 224 (312)
Q Consensus 153 ~~~----~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (312)
+.. . .. .+++|+.|++++ .+.+ ++.++. +++|+.|++++|......+. .-
T Consensus 419 ~~~~~~~~l~~---------~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-----------~l 476 (594)
T 2p1m_B 419 PLDIGFGAIVE---------HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-----------HV 476 (594)
T ss_dssp CTHHHHHHHHH---------HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------HH
T ss_pred chhhHHHHHHh---------hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHH-----------HH
Confidence 110 0 11 566777777755 3333 223443 67788888877753222111 01
Q ss_pred CccCCCcCeeecccccccccccc--CCcCCCCccEEEecCCCC
Q 045137 225 ISPFENLKSLDLSYLPELKSIFW--KPLPFTHLKEMGVRACDQ 265 (312)
Q Consensus 225 ~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~i~~c~~ 265 (312)
...+++|++|++++|+. ..... ....+++|+.|++++|+.
T Consensus 477 ~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 477 LSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 13478888888888764 33222 134578888888888864
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.14 E-value=3.7e-11 Score=98.62 Aligned_cols=125 Identities=17% Similarity=0.246 Sum_probs=89.8
Q ss_pred cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
|+|++|.|..+| ..|+.+++|++|+|++| .+..+++..+.++++|++|++++|.+..+| ...+
T Consensus 37 L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---------------~~~f 100 (220)
T 2v9t_B 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELP---------------KSLF 100 (220)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCCCC---------------TTTT
T ss_pred EECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCccC---------------HhHc
Confidence 789999999887 57999999999999999 888886656999999999999999886533 2234
Q ss_pred cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137 81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV 160 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 160 (312)
..+.+|+.|+++.+.... .. +..+..+++|++|+++++ .+..+....+.
T Consensus 101 ~~l~~L~~L~L~~N~l~~---------------------------~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-- 149 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINC---------------------------LR-VDAFQDLHNLNLLSLYDN-KLQTIAKGTFS-- 149 (220)
T ss_dssp TTCTTCCEEECCSSCCCC---------------------------CC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTT--
T ss_pred cCCCCCCEEECCCCCCCE---------------------------eC-HHHcCCCCCCCEEECCCC-cCCEECHHHHh--
Confidence 556666666665443211 10 135566677777777765 45555444333
Q ss_pred cccCCCCcccccceEeecCC
Q 045137 161 RKRREPFVFHSLHLVTIYSC 180 (312)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~ 180 (312)
.+++|+.|++++|
T Consensus 150 -------~l~~L~~L~L~~N 162 (220)
T 2v9t_B 150 -------PLRAIQTMHLAQN 162 (220)
T ss_dssp -------TCTTCCEEECCSS
T ss_pred -------CCCCCCEEEeCCC
Confidence 5777888888777
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.14 E-value=2.8e-11 Score=99.40 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=91.0
Q ss_pred CcccCCCCCcccc--HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhh
Q 045137 1 LLDISHTTIRELP--EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQ 78 (312)
Q Consensus 1 ~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (312)
+|+|++|.++.++ ..|+.+++|++|+|++| .+..+++..+.++++|++|++++|.+..+ ...
T Consensus 36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~ 99 (220)
T 2v70_A 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENV---------------QHK 99 (220)
T ss_dssp EEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCC---------------CGG
T ss_pred EEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCcc---------------CHh
Confidence 3789999999884 45899999999999999 89999887799999999999999988642 233
Q ss_pred hccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137 79 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE 158 (312)
Q Consensus 79 ~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 158 (312)
.+..+++|+.|+++.+.... . .+..+..+++|++|+++++ .+..+....+.
T Consensus 100 ~~~~l~~L~~L~Ls~N~l~~---------------------------~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 150 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNRITC---------------------------V-GNDSFIGLSSVRLLSLYDN-QITTVAPGAFD 150 (220)
T ss_dssp GGTTCSSCCEEECTTSCCCC---------------------------B-CTTSSTTCTTCSEEECTTS-CCCCBCTTTTT
T ss_pred HhcCCcCCCEEECCCCcCCe---------------------------E-CHhHcCCCccCCEEECCCC-cCCEECHHHhc
Confidence 45566666666665433211 1 0134566777888888765 55555444443
Q ss_pred cccccCCCCcccccceEeecCC
Q 045137 159 IVRKRREPFVFHSLHLVTIYSC 180 (312)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~~ 180 (312)
.+++|+.|++++|
T Consensus 151 ---------~l~~L~~L~L~~N 163 (220)
T 2v70_A 151 ---------TLHSLSTLNLLAN 163 (220)
T ss_dssp ---------TCTTCCEEECCSC
T ss_pred ---------CCCCCCEEEecCc
Confidence 6778888888877
No 119
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.14 E-value=1.2e-11 Score=116.38 Aligned_cols=223 Identities=13% Similarity=0.060 Sum_probs=135.0
Q ss_pred cccCCC-CCccccHHhhCCCCCcEEecCCCC------------------------------CccccCchhhhccccccEE
Q 045137 2 LDISHT-TIRELPEELKLLVNLKCLNLRWTG------------------------------ALIRIPRGLISKFSRLRVL 50 (312)
Q Consensus 2 L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~~~------------------------------~~~~lp~~~i~~l~~L~~L 50 (312)
|++++| .+..+|..++.+++|++|+++.+. ....++. .+..+++|++|
T Consensus 216 L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~-~~~~~~~L~~L 294 (594)
T 2p1m_B 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA-VYSVCSRLTTL 294 (594)
T ss_dssp EECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG-GHHHHTTCCEE
T ss_pred EecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH-HHHhhCCCCEE
Confidence 567776 555677777788888888765441 1112232 23467888888
Q ss_pred EEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecCh-hhHHHHh-hcccccccceEEEEeec--------
Q 045137 51 RMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY-HALQILL-SSNKLKSCIRSLYLYLT-------- 120 (312)
Q Consensus 51 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~-~~~~~l~-~l~~l~~~L~~L~l~~~-------- 120 (312)
++++|.+.. ......+..+++|+.|++..+-. ..+..+. .++ +|+.|++..+
T Consensus 295 ~L~~~~l~~--------------~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~----~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 295 NLSYATVQS--------------YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK----DLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp ECTTCCCCH--------------HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT----TCCEEEEECSCTTCSSCS
T ss_pred EccCCCCCH--------------HHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCC----CCCEEEEecCcccccccC
Confidence 888887532 12233356788999999985511 1222222 244 7999999543
Q ss_pred CCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeec-----CCCCcccCCc-------
Q 045137 121 GDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIY-----SCHKLKDSTF------- 188 (312)
Q Consensus 121 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~l~~l~~------- 188 (312)
..............+++|++|.+. ++.+.......... .+++|+.|+++ +|..+++.|.
T Consensus 357 ~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~--------~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l 427 (594)
T 2p1m_B 357 VALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIAR--------NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHH--------HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH
T ss_pred CCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHh--------hCCCcceeEeecccCCCcccccCCchhhHHHHH
Confidence 222333332233447889999664 44555433333321 57899999999 5556764432
Q ss_pred cCCCCCCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeeccccccccccccC--CcCCCCccEEEecCCCC
Q 045137 189 LAFAPNLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWK--PLPFTHLKEMGVRACDQ 265 (312)
Q Consensus 189 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~i~~c~~ 265 (312)
+..+++|+.|++.+ .+.+.... .-...+++|++|++++|. +...... ...+++|+.|++++|+-
T Consensus 428 ~~~~~~L~~L~L~~--~l~~~~~~----------~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG--LLTDKVFE----------YIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHCTTCCEEECCS--SCCHHHHH----------HHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HhhCCCccEEeecC--cccHHHHH----------HHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 45689999999966 23322110 011237899999999875 4332221 24589999999999874
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=3.5e-11 Score=94.33 Aligned_cols=131 Identities=20% Similarity=0.184 Sum_probs=87.8
Q ss_pred CcccCCCCCc--cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhh
Q 045137 1 LLDISHTTIR--ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQ 78 (312)
Q Consensus 1 ~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (312)
+|++++|.+. .+|..++.+++|++|++++| .+..+ .. +..+++|++|++++|.+.. ....
T Consensus 28 ~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~-~~~l~~L~~L~Ls~N~l~~---------------~~~~ 89 (168)
T 2ell_A 28 ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SN-LPKLPKLKKLELSENRIFG---------------GLDM 89 (168)
T ss_dssp EEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SS-CCCCSSCCEEEEESCCCCS---------------CCCH
T ss_pred EEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hh-hccCCCCCEEECcCCcCch---------------HHHH
Confidence 3789999998 89988999999999999999 78888 33 8999999999999998853 1222
Q ss_pred hccCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeee---e
Q 045137 79 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKI---D 155 (312)
Q Consensus 79 ~l~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~---~ 155 (312)
.+..+++|+.|+++.+... .......+..+++|++|+++++ .+..++. .
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~---------------------------~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~ 141 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLK---------------------------DISTLEPLKKLECLKSLDLFNC-EVTNLNDYRES 141 (168)
T ss_dssp HHHHCTTCCEEECBSSSCC---------------------------SSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHH
T ss_pred HHhhCCCCCEEeccCCccC---------------------------cchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHH
Confidence 2333555555555433221 1111145566677777777765 3443332 1
Q ss_pred ccccccccCCCCcccccceEeecCCCCcccCC
Q 045137 156 YTEIVRKRREPFVFHSLHLVTIYSCHKLKDST 187 (312)
Q Consensus 156 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 187 (312)
.+. .+++|++|++++| ....+|
T Consensus 142 ~~~---------~l~~L~~L~l~~n-~~~~~~ 163 (168)
T 2ell_A 142 VFK---------LLPQLTYLDGYDR-EDQEAP 163 (168)
T ss_dssp HHT---------TCSSCCEETTEET-TSCBCC
T ss_pred HHH---------hCccCcEecCCCC-Chhhcc
Confidence 222 6778888888777 555554
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.10 E-value=3.8e-11 Score=92.17 Aligned_cols=128 Identities=21% Similarity=0.202 Sum_probs=82.3
Q ss_pred CCCCCcEEecCCCCCcc--ccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecC
Q 045137 18 LLVNLKCLNLRWTGALI--RIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS 95 (312)
Q Consensus 18 ~L~~L~~L~L~~~~~~~--~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~ 95 (312)
..++|++|++++| .+. .+|.. +..+++|++|++++|.+.. +..+..+++|+.++++.+.
T Consensus 15 ~~~~l~~L~l~~n-~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~-----------------~~~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 15 TPSDVKELVLDNS-RSNEGKLEGL-TDEFEELEFLSTINVGLTS-----------------IANLPKLNKLKKLELSDNR 75 (149)
T ss_dssp CGGGCSEEECTTC-BCBTTBCCSC-CTTCTTCCEEECTTSCCCC-----------------CTTCCCCTTCCEEECCSSC
T ss_pred CCccCeEEEccCC-cCChhHHHHH-HhhcCCCcEEECcCCCCCC-----------------chhhhcCCCCCEEECCCCc
Confidence 3467777777777 555 56663 6777777777777776642 1556667777777777665
Q ss_pred hhh-HHHH-hhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeee---eccccccccCCCCccc
Q 045137 96 YHA-LQIL-LSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKI---DYTEIVRKRREPFVFH 170 (312)
Q Consensus 96 ~~~-~~~l-~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~---~~~~~~~~~~~~~~~~ 170 (312)
... ++.. ..++ +|+.|+++++.- .....+..+..+++|++|+++++ .+...+. ..+. .++
T Consensus 76 i~~~~~~~~~~l~----~L~~L~ls~N~i-~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~---------~l~ 140 (149)
T 2je0_A 76 VSGGLEVLAEKCP----NLTHLNLSGNKI-KDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFK---------LLP 140 (149)
T ss_dssp CCSCTHHHHHHCT----TCCEEECTTSCC-CSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHH---------HCT
T ss_pred ccchHHHHhhhCC----CCCEEECCCCcC-CChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHH---------HCC
Confidence 543 3433 3456 788888877643 22222256778888999999876 4554433 2232 678
Q ss_pred ccceEeecC
Q 045137 171 SLHLVTIYS 179 (312)
Q Consensus 171 ~L~~L~l~~ 179 (312)
+|++|++++
T Consensus 141 ~L~~L~l~d 149 (149)
T 2je0_A 141 QLTYLDGYD 149 (149)
T ss_dssp TCCEETTBC
T ss_pred CcccccCCC
Confidence 888887753
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.09 E-value=2.1e-11 Score=98.35 Aligned_cols=90 Identities=20% Similarity=0.133 Sum_probs=56.5
Q ss_pred CCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCce
Q 045137 8 TIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLE 87 (312)
Q Consensus 8 ~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 87 (312)
.++.+|..++.+++|++|++++| .+..+| . +.++++|++|++++|.+..+| ..+..+++|+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~-~~~l~~L~~L~l~~n~l~~l~----------------~~~~~~~~L~ 96 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTN-NIEKIS-S-LSGMENLRILSLGRNLIKKIE----------------NLDAVADTLE 96 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEE-EESCCC-C-HHHHTTCCEEEEEEEEECSCS----------------SHHHHHHHCS
T ss_pred cHhhhhHHHhcCCCCCEEECCCC-CCcccc-c-cccCCCCCEEECCCCCccccc----------------chhhcCCcCC
Confidence 45566668888888888888888 777777 3 888888888888888765322 1223334555
Q ss_pred EEEEEecChhhHHHHhhcccccccceEEEEeec
Q 045137 88 VLELTLGSYHALQILLSSNKLKSCIRSLYLYLT 120 (312)
Q Consensus 88 ~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~ 120 (312)
.|+++.+....++.+..++ +|+.|+++++
T Consensus 97 ~L~L~~N~l~~l~~~~~l~----~L~~L~l~~N 125 (198)
T 1ds9_A 97 ELWISYNQIASLSGIEKLV----NLRVLYMSNN 125 (198)
T ss_dssp EEEEEEEECCCHHHHHHHH----HSSEEEESEE
T ss_pred EEECcCCcCCcCCccccCC----CCCEEECCCC
Confidence 5666555444444444444 4555555543
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=1.5e-10 Score=100.92 Aligned_cols=49 Identities=10% Similarity=0.048 Sum_probs=39.3
Q ss_pred ccc-HHhhC--------CCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccc
Q 045137 11 ELP-EELKL--------LVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFY 61 (312)
Q Consensus 11 ~lp-~~i~~--------L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~ 61 (312)
.+| ..|.. +.+|+.|+|.. .+..+++++|.+|++|+.|++.++.+..++
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~ 140 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLL 140 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEEC
T ss_pred ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccc
Confidence 455 55677 89999999988 578899888999999999999988776543
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.03 E-value=1.5e-10 Score=93.03 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=91.6
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
++++++.++.+|.++. ++|++|++++| .+..+|.. +.++++|++|++++|.+.. .....+.
T Consensus 15 l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~-~~~l~~L~~L~Ls~N~i~~---------------i~~~~f~ 75 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKE-LSNYKHLTLIDLSNNRIST---------------LSNQSFS 75 (193)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGG-GGGCTTCCEEECCSSCCCC---------------CCTTTTT
T ss_pred EEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHH-hhcccCCCEEECCCCcCCE---------------eCHhHcc
Confidence 5788889999986553 68999999999 88889864 8999999999999998864 3334577
Q ss_pred CCCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137 82 GLKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG 146 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 146 (312)
.+.+|+.|+++.+....++ .+..++ +|+.|++.+.... .... ..+..+++|+.|+++++
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~----~L~~L~L~~N~l~-~~~~-~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIPPRTFDGLK----SLRLLSLHGNDIS-VVPE-GAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCT----TCCEEECCSSCCC-BCCT-TTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCccCEeCHHHhCCCC----CCCEEECCCCCCC-eeCh-hhhhcCccccEEEeCCC
Confidence 8888999999877665443 355566 8899998876432 2222 45778899999999975
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.03 E-value=1.5e-10 Score=92.92 Aligned_cols=124 Identities=20% Similarity=0.235 Sum_probs=89.1
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCc-hhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPR-GLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
++++++.++.+|..+.. +|++|++++| .+..+++ ++++.+++|++|++++|.+.. .....+
T Consensus 13 l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~ 74 (192)
T 1w8a_A 13 VDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTG---------------IEPNAF 74 (192)
T ss_dssp EECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCC---------------BCTTTT
T ss_pred EEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCC---------------cCHhHc
Confidence 68899999999976654 9999999999 8888876 358999999999999998854 334556
Q ss_pred cCCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccc
Q 045137 81 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIV 160 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 160 (312)
..+.+|+.|+++.+.... .. ...+..+++|++|+++++ .+..+....+.
T Consensus 75 ~~l~~L~~L~Ls~N~l~~---------------------------~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-- 123 (192)
T 1w8a_A 75 EGASHIQELQLGENKIKE---------------------------IS-NKMFLGLHQLKTLNLYDN-QISCVMPGSFE-- 123 (192)
T ss_dssp TTCTTCCEEECCSCCCCE---------------------------EC-SSSSTTCTTCCEEECCSS-CCCEECTTSST--
T ss_pred CCcccCCEEECCCCcCCc---------------------------cC-HHHhcCCCCCCEEECCCC-cCCeeCHHHhh--
Confidence 667777777766443211 11 134566788888888865 55555444343
Q ss_pred cccCCCCcccccceEeecCCC
Q 045137 161 RKRREPFVFHSLHLVTIYSCH 181 (312)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~ 181 (312)
.+++|++|++++|+
T Consensus 124 -------~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 124 -------HLNSLTSLNLASNP 137 (192)
T ss_dssp -------TCTTCCEEECTTCC
T ss_pred -------cCCCCCEEEeCCCC
Confidence 67888888888883
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.03 E-value=2.6e-10 Score=91.61 Aligned_cols=122 Identities=17% Similarity=0.193 Sum_probs=82.9
Q ss_pred cEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhhHH--
Q 045137 23 KCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ-- 100 (312)
Q Consensus 23 ~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~-- 100 (312)
++++++++ .+..+|.+ +. ++|++|++++|.+..+ ...+..+.+|+.|+++.+....+.
T Consensus 13 ~~l~~~~~-~l~~ip~~-~~--~~l~~L~L~~n~i~~i----------------p~~~~~l~~L~~L~Ls~N~i~~i~~~ 72 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKG-IP--RDVTELYLDGNQFTLV----------------PKELSNYKHLTLIDLSNNRISTLSNQ 72 (193)
T ss_dssp TEEECTTS-CCSSCCSC-CC--TTCCEEECCSSCCCSC----------------CGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred CEEEcCCC-CCCcCCCC-CC--CCCCEEECCCCcCchh----------------HHHhhcccCCCEEECCCCcCCEeCHh
Confidence 57888888 78888875 32 5788888888877532 245677788888888877654433
Q ss_pred HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCC
Q 045137 101 ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSC 180 (312)
Q Consensus 101 ~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 180 (312)
.+..++ +|+.|++++.... .... ..+..+++|++|+++++ .+..+....+. .+++|+.|++++|
T Consensus 73 ~f~~l~----~L~~L~Ls~N~l~-~i~~-~~f~~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~L~~N 136 (193)
T 2wfh_A 73 SFSNMT----QLLTLILSYNRLR-CIPP-RTFDGLKSLRLLSLHGN-DISVVPEGAFN---------DLSALSHLAIGAN 136 (193)
T ss_dssp TTTTCT----TCCEEECCSSCCC-BCCT-TTTTTCTTCCEEECCSS-CCCBCCTTTTT---------TCTTCCEEECCSS
T ss_pred HccCCC----CCCEEECCCCccC-EeCH-HHhCCCCCCCEEECCCC-CCCeeChhhhh---------cCccccEEEeCCC
Confidence 355555 7888888875432 2221 46777888888888865 56555544343 6788888888877
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.02 E-value=1.8e-10 Score=88.33 Aligned_cols=121 Identities=18% Similarity=0.051 Sum_probs=77.7
Q ss_pred cccCCCCCc--cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 2 LDISHTTIR--ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 2 L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
|++++|.+. .+|..++.+++|++|++++| .+..+ . .++.+++|++|++++|.+.. .....
T Consensus 22 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~-~~~~l~~L~~L~Ls~n~i~~---------------~~~~~ 83 (149)
T 2je0_A 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-A-NLPKLNKLKKLELSDNRVSG---------------GLEVL 83 (149)
T ss_dssp EECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-T-TCCCCTTCCEEECCSSCCCS---------------CTHHH
T ss_pred EEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-h-hhhcCCCCCEEECCCCcccc---------------hHHHH
Confidence 577777777 67777778888888888888 66666 3 27778888888888877643 23344
Q ss_pred ccCCCCceEEEEEecChhhH---HHHhhcccccccceEEEEeecCCCccccc-hhhhcCccccceEEec
Q 045137 80 LLGLKYLEVLELTLGSYHAL---QILLSSNKLKSCIRSLYLYLTGDKKSIID-ATAFTDLNHLNELWID 144 (312)
Q Consensus 80 l~~L~~L~~l~l~~~~~~~~---~~l~~l~~l~~~L~~L~l~~~~~~~~~~~-~~~l~~l~~L~~L~l~ 144 (312)
+..+++|+.++++.+....+ ..+..++ +|+.|+++++.-...... ...+..+++|++|+++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~----~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLE----NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHHHGGGGGCT----TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhhCCCCCEEECCCCcCCChHHHHHHhhCC----CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 45577788887776655443 3344455 677777776532211110 1246667777777664
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.94 E-value=1e-09 Score=86.69 Aligned_cols=123 Identities=18% Similarity=0.231 Sum_probs=84.4
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
++++++.+..+|..+ .++|++|++++| .+..+|+..++.+++|++|++++|.+..++ ...+.
T Consensus 12 l~~~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~~~ 73 (177)
T 2o6r_A 12 IRCNSKGLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLP---------------DGVFD 73 (177)
T ss_dssp EECCSSCCSSCCTTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCC---------------TTTTT
T ss_pred EEecCCCCccCCCCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeC---------------hhHcc
Confidence 577888899998544 479999999999 788888877899999999999999885422 22345
Q ss_pred CCCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeecccccc
Q 045137 82 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVR 161 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 161 (312)
.+.+|+.++++.+.... .. ...+..+++|++|+++++ .+..++...+.
T Consensus 74 ~l~~L~~L~l~~N~l~~---------------------------~~-~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~--- 121 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQS---------------------------LP-NGVFDKLTQLKELALDTN-QLKSVPDGIFD--- 121 (177)
T ss_dssp TCTTCCEEECCSSCCCC---------------------------CC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTT---
T ss_pred CCCccCEEECCCCCccc---------------------------cC-HHHhhCCcccCEEECcCC-cceEeCHHHhc---
Confidence 56666666665432211 10 123556677888888765 55554443332
Q ss_pred ccCCCCcccccceEeecCC
Q 045137 162 KRREPFVFHSLHLVTIYSC 180 (312)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~ 180 (312)
.+++|++|++++|
T Consensus 122 ------~l~~L~~L~l~~N 134 (177)
T 2o6r_A 122 ------RLTSLQKIWLHTN 134 (177)
T ss_dssp ------TCTTCCEEECCSS
T ss_pred ------CCcccCEEEecCC
Confidence 5778888888877
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.92 E-value=5.8e-10 Score=88.07 Aligned_cols=131 Identities=12% Similarity=0.020 Sum_probs=87.6
Q ss_pred HhhCCCCCcEEecCCCCCccccCchhhhccc-cccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEe
Q 045137 15 ELKLLVNLKCLNLRWTGALIRIPRGLISKFS-RLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTL 93 (312)
Q Consensus 15 ~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~ 93 (312)
.+.++.+|+.|++++| .+..+|. +..+. +|++|++++|.+.. +..+..+++|+.|+++.
T Consensus 14 ~~~~~~~L~~L~l~~n-~l~~i~~--~~~~~~~L~~L~Ls~N~l~~-----------------~~~l~~l~~L~~L~Ls~ 73 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGY-KIPVIEN--LGATLDQFDAIDFSDNEIRK-----------------LDGFPLLRRLKTLLVNN 73 (176)
T ss_dssp EEECTTSCEEEECTTS-CCCSCCC--GGGGTTCCSEEECCSSCCCE-----------------ECCCCCCSSCCEEECCS
T ss_pred hcCCcCCceEEEeeCC-CCchhHH--hhhcCCCCCEEECCCCCCCc-----------------ccccccCCCCCEEECCC
Confidence 3566778888888888 7777754 55544 88888888887742 25567777888888877
Q ss_pred cChhhHH-H-HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeee---ccccccccCCCCc
Q 045137 94 GSYHALQ-I-LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKID---YTEIVRKRREPFV 168 (312)
Q Consensus 94 ~~~~~~~-~-l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~---~~~~~~~~~~~~~ 168 (312)
+....++ . +..++ +|+.|+++++.-. .......+..+++|+.|+++++ .+..++.. ... .
T Consensus 74 N~l~~~~~~~~~~l~----~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~---------~ 138 (176)
T 1a9n_A 74 NRICRIGEGLDQALP----DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIY---------K 138 (176)
T ss_dssp SCCCEECSCHHHHCT----TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHH---------H
T ss_pred CcccccCcchhhcCC----CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHH---------H
Confidence 6654433 1 35556 7888888876432 2221136778888999999876 44433321 122 6
Q ss_pred ccccceEeecCC
Q 045137 169 FHSLHLVTIYSC 180 (312)
Q Consensus 169 ~~~L~~L~l~~~ 180 (312)
+++|+.|+++++
T Consensus 139 l~~L~~Ld~~~n 150 (176)
T 1a9n_A 139 VPQVRVLDFQKV 150 (176)
T ss_dssp CTTCSEETTEEC
T ss_pred CCccceeCCCcC
Confidence 789999998887
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.90 E-value=6.8e-10 Score=87.65 Aligned_cols=120 Identities=16% Similarity=0.085 Sum_probs=91.4
Q ss_pred cccCCCCCccccHHhhCCC-CCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIRELPEELKLLV-NLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
|++++|.++.+|. +..+. +|++|++++| .+..++ . ++.+++|++|++++|.+..+| ...+
T Consensus 24 L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~~-~-l~~l~~L~~L~Ls~N~l~~~~---------------~~~~ 84 (176)
T 1a9n_A 24 LDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKLD-G-FPLLRRLKTLLVNNNRICRIG---------------EGLD 84 (176)
T ss_dssp EECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEEC-C-CCCCSSCCEEECCSSCCCEEC---------------SCHH
T ss_pred EEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCccc-c-cccCCCCCEEECCCCcccccC---------------cchh
Confidence 7899999999875 55555 9999999999 888884 3 899999999999999886432 1224
Q ss_pred cCCCCceEEEEEecChhhHHH---HhhcccccccceEEEEeecCCCccccchh----hhcCccccceEEeccCc
Q 045137 81 LGLKYLEVLELTLGSYHALQI---LLSSNKLKSCIRSLYLYLTGDKKSIIDAT----AFTDLNHLNELWIDNGI 147 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~~---l~~l~~l~~~L~~L~l~~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~ 147 (312)
..+++|+.++++.+....++. +..++ +|+.|++.++.-. ..+. .+..+++|+.|+++.+.
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~----~L~~L~l~~N~i~---~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDLDPLASLK----SLTYLCILRNPVT---NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGGGGGCT----TCCEEECCSSGGG---GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCCcCCcchhhHhhhcCC----CCCEEEecCCCCC---CcHhHHHHHHHHCCccceeCCCcCC
Confidence 678899999999876655443 45555 7999999876432 2222 47888999999998764
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.85 E-value=2.6e-10 Score=109.67 Aligned_cols=116 Identities=19% Similarity=0.145 Sum_probs=76.0
Q ss_pred CCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCC
Q 045137 6 HTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKY 85 (312)
Q Consensus 6 ~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 85 (312)
+|.+...|..+..+.+|+.|+|++| .+..+|.. +.++++|++|++++|.+..+ +..+..|.+
T Consensus 210 ~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~-~~~l~~L~~L~Ls~N~l~~l----------------p~~~~~l~~ 271 (727)
T 4b8c_D 210 ENRMVMPKDSKYDDQLWHALDLSNL-QIFNISAN-IFKYDFLTRLYLNGNSLTEL----------------PAEIKNLSN 271 (727)
T ss_dssp ------------CCCCCCEEECTTS-CCSCCCGG-GGGCCSCSCCBCTTSCCSCC----------------CGGGGGGTT
T ss_pred ccceecChhhhccCCCCcEEECCCC-CCCCCChh-hcCCCCCCEEEeeCCcCccc----------------ChhhhCCCC
Confidence 3344444677888899999999998 77888887 66889999999998887532 345677788
Q ss_pred ceEEEEEecChhhHH-HHhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccC
Q 045137 86 LEVLELTLGSYHALQ-ILLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNG 146 (312)
Q Consensus 86 L~~l~l~~~~~~~~~-~l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 146 (312)
|+.|+++.+....++ .+..++ +|+.|+++++.. . .++..+..+++|+.|+++++
T Consensus 272 L~~L~Ls~N~l~~lp~~~~~l~----~L~~L~L~~N~l-~--~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 272 LRVLDLSHNRLTSLPAELGSCF----QLKYFYFFDNMV-T--TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CCEEECTTSCCSSCCSSGGGGT----TCSEEECCSSCC-C--CCCSSTTSCTTCCCEECTTS
T ss_pred CCEEeCcCCcCCccChhhcCCC----CCCEEECCCCCC-C--ccChhhhcCCCccEEeCCCC
Confidence 888888877655443 345555 778888876633 2 33345777888888888865
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.83 E-value=1.9e-09 Score=85.13 Aligned_cols=79 Identities=20% Similarity=0.284 Sum_probs=63.4
Q ss_pred CcccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
+|++++|.+..+| ..++.+++|++|++++| .+..+|+..+..+++|++|++++|.+..++ ...
T Consensus 32 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~---------------~~~ 95 (177)
T 2o6r_A 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLP---------------NGV 95 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------TTT
T ss_pred EEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccC---------------HHH
Confidence 3789999999887 55799999999999999 889998877899999999999999886432 233
Q ss_pred ccCCCCceEEEEEecC
Q 045137 80 LLGLKYLEVLELTLGS 95 (312)
Q Consensus 80 l~~L~~L~~l~l~~~~ 95 (312)
+..+++|+.++++.+.
T Consensus 96 ~~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQ 111 (177)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hhCCcccCEEECcCCc
Confidence 4566677777766543
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.82 E-value=3.5e-09 Score=83.12 Aligned_cols=98 Identities=13% Similarity=0.196 Sum_probs=71.9
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
++++++.++.+|.++ .++|++|+|++| .+..+++..+.++++|++|++++|.+..++ ...+.
T Consensus 14 l~~s~n~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---------------~~~f~ 75 (170)
T 3g39_A 14 VDCSGKSLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLP---------------AGVFD 75 (170)
T ss_dssp EECTTSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCC---------------TTTTT
T ss_pred EEeCCCCcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccC---------------hhhcc
Confidence 678888888888665 378888888888 788876666888888888888888876432 23356
Q ss_pred CCCCceEEEEEecChhhHH--HHhhcccccccceEEEEeecC
Q 045137 82 GLKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLYLYLTG 121 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~ 121 (312)
.+.+|+.|+++.+....++ .+..++ +|+.|++.+..
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~----~L~~L~L~~N~ 113 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRGAFDNLK----SLTHIWLLNNP 113 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCT----TCCEEECCSSC
T ss_pred CCCCCCEEECCCCccCEeCHHHhcCCC----CCCEEEeCCCC
Confidence 7788888888877665544 245556 78888887653
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.82 E-value=1.5e-09 Score=86.99 Aligned_cols=79 Identities=19% Similarity=0.152 Sum_probs=63.1
Q ss_pred CcccCCCCCccccH--HhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhh
Q 045137 1 LLDISHTTIRELPE--ELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQ 78 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (312)
+|++++|.+..++. .|+.+++|++|+|++| .+..+++..+.++++|++|++++|.+..+ ...
T Consensus 33 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~ 96 (192)
T 1w8a_A 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEI---------------SNK 96 (192)
T ss_dssp EEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEE---------------CSS
T ss_pred EEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCcCCcc---------------CHH
Confidence 37899999999874 3999999999999999 88888665699999999999999998653 233
Q ss_pred hccCCCCceEEEEEecC
Q 045137 79 ELLGLKYLEVLELTLGS 95 (312)
Q Consensus 79 ~l~~L~~L~~l~l~~~~ 95 (312)
.+..+++|+.|+++.+.
T Consensus 97 ~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp SSTTCTTCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCc
Confidence 45566777777776543
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.80 E-value=2.3e-09 Score=84.14 Aligned_cols=78 Identities=23% Similarity=0.236 Sum_probs=48.9
Q ss_pred cccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
|+|++|.|+.+ |..|+.+++|++|+|++| .+..+|++++.++++|++|++++|.+..++ ...+
T Consensus 35 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~---------------~~~~ 98 (170)
T 3g39_A 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSIP---------------RGAF 98 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------TTTT
T ss_pred EEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCccCEeC---------------HHHh
Confidence 56667777666 355667777777777777 666666665666777777777766664321 2235
Q ss_pred cCCCCceEEEEEecC
Q 045137 81 LGLKYLEVLELTLGS 95 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~ 95 (312)
..+++|+.++++.+.
T Consensus 99 ~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 99 DNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCCCCCEEEeCCCC
Confidence 556666666666553
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.80 E-value=4.6e-09 Score=82.78 Aligned_cols=98 Identities=13% Similarity=0.194 Sum_probs=70.7
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
++++++.+..+|.++. ++|++|+|++| .+..+++..+.++++|++|++++|.+..+| ...+.
T Consensus 17 l~~~~n~l~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~---------------~~~~~ 78 (174)
T 2r9u_A 17 VNCQNIRLASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIP---------------TGVFD 78 (174)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------TTTTT
T ss_pred EEeCCCCCCccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccC---------------hhHhC
Confidence 5778888888887664 78888888888 777776666888888888888888776432 22346
Q ss_pred CCCCceEEEEEecChhhHHH--HhhcccccccceEEEEeecC
Q 045137 82 GLKYLEVLELTLGSYHALQI--LLSSNKLKSCIRSLYLYLTG 121 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~~--l~~l~~l~~~L~~L~l~~~~ 121 (312)
.+.+|+.|+++.+....++. +..++ +|+.|++.+..
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~----~L~~L~L~~N~ 116 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPRGAFDNLK----SLTHIYLYNNP 116 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCT----TCSEEECCSSC
T ss_pred CcchhhEEECCCCccceeCHHHhcccc----CCCEEEeCCCC
Confidence 67788888888776654442 45555 77888877653
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.80 E-value=2.3e-09 Score=84.53 Aligned_cols=56 Identities=29% Similarity=0.384 Sum_probs=33.7
Q ss_pred cccCCCCCccc-cHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccc
Q 045137 2 LDISHTTIREL-PEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF 58 (312)
Q Consensus 2 L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~ 58 (312)
|+|++|.+..+ |..|+.+++|++|+|++| .+..+|++++.++++|++|++++|.+.
T Consensus 38 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccc
Confidence 45666666655 355666666666666666 566666554566666666666666554
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.79 E-value=2.9e-10 Score=91.65 Aligned_cols=96 Identities=19% Similarity=0.125 Sum_probs=77.7
Q ss_pred CcccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 1 LLDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 1 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
+|++++|.+..+| .++.+++|++|++++| .+..+|.. +..+++|++|++++|.+.. +..+
T Consensus 52 ~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~~~L~~L~L~~N~l~~-----------------l~~~ 111 (198)
T 1ds9_A 52 HLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENL-DAVADTLEELWISYNQIAS-----------------LSGI 111 (198)
T ss_dssp EEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSH-HHHHHHCSEEEEEEEECCC-----------------HHHH
T ss_pred EEECCCCCCcccc-ccccCCCCCEEECCCC-Ccccccch-hhcCCcCCEEECcCCcCCc-----------------CCcc
Confidence 4789999999999 9999999999999999 88899875 8889999999999998853 2356
Q ss_pred cCCCCceEEEEEecChhhHH---HHhhcccccccceEEEEeec
Q 045137 81 LGLKYLEVLELTLGSYHALQ---ILLSSNKLKSCIRSLYLYLT 120 (312)
Q Consensus 81 ~~L~~L~~l~l~~~~~~~~~---~l~~l~~l~~~L~~L~l~~~ 120 (312)
..+++|+.++++.+....++ .+..++ +|+.|++.++
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~----~L~~L~l~~N 150 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALD----KLEDLLLAGN 150 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTT----TCSEEEECSC
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCC----CCCEEEecCC
Confidence 77788999998877655433 455555 7788887765
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=1.7e-07 Score=81.51 Aligned_cols=214 Identities=13% Similarity=0.015 Sum_probs=113.6
Q ss_pred cccCCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhc
Q 045137 2 LDISHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQEL 80 (312)
Q Consensus 2 L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (312)
|+|+. .++.++ ..|..+++|+.+++.+| .+..+++.+|..+.++..+.........-. .......+
T Consensus 106 l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~-----------~~i~~~~f 172 (329)
T 3sb4_A 106 VILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFK-----------NRWEHFAF 172 (329)
T ss_dssp -CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTS-----------TTTTTSCE
T ss_pred EECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcc-----------cccccccc
Confidence 45666 788887 67999999999999999 888999988988887777765442110000 00111122
Q ss_pred cCCCCce-EEEEEecChhhHHH-HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccc
Q 045137 81 LGLKYLE-VLELTLGSYHALQI-LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTE 158 (312)
Q Consensus 81 ~~L~~L~-~l~l~~~~~~~~~~-l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 158 (312)
..+..|+ .+.+. ....++. +........++..+.+.+.-. ..........+++|+++++.++ .+..++...+.
T Consensus 173 ~~~~~L~~~i~~~--~~~~l~~~~~~~~~~~~~~~~l~~~~~l~--~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~ 247 (329)
T 3sb4_A 173 IEGEPLETTIQVG--AMGKLEDEIMKAGLQPRDINFLTIEGKLD--NADFKLIRDYMPNLVSLDISKT-NATTIPDFTFA 247 (329)
T ss_dssp EESCCCEEEEEEC--TTCCHHHHHHHTTCCGGGCSEEEEEECCC--HHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTT
T ss_pred ccccccceeEEec--CCCcHHHHHhhcccCccccceEEEeeeec--HHHHHHHHHhcCCCeEEECCCC-CcceecHhhhh
Confidence 3344554 33332 2112221 111111112555665554311 1111011123567777777754 46666655554
Q ss_pred cccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCc-eEEEeeccccceecccCccccCCCCCCCCccCCCcCeee
Q 045137 159 IVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLK-SLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLD 235 (312)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 235 (312)
.+.+|+.|++.++ +..++ .+..+++|+ .+.+.+ .++.+-. ..-..+++|+.+.
T Consensus 248 ---------~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-----------~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 248 ---------QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-----------GAFMGCDNLRYVL 303 (329)
T ss_dssp ---------TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-----------TTTTTCTTEEEEE
T ss_pred ---------CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-----------hhhhCCccCCEEE
Confidence 6777777777764 55555 566777777 777755 2333311 1223456666666
Q ss_pred ccccccccccccC-CcCCCCccEE
Q 045137 236 LSYLPELKSIFWK-PLPFTHLKEM 258 (312)
Q Consensus 236 l~~~~~l~~~~~~-~~~~~~L~~L 258 (312)
+.+ ..++.+... +..+++|+.+
T Consensus 304 l~~-n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 304 ATG-DKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp ECS-SCCCEECTTTTCTTCCCCEE
T ss_pred eCC-CccCccchhhhcCCcchhhh
Confidence 544 234444432 2334444443
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=6.1e-07 Score=80.11 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=71.2
Q ss_pred cccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcc-----cCC--ccCCCCCCceEEEeeccccce
Q 045137 136 NHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLK-----DST--FLAFAPNLKSLSLFKCRAMEE 208 (312)
Q Consensus 136 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~--~l~~l~~L~~L~l~~~~~~~~ 208 (312)
.+|+.+.+.+ .+..++...+. .+++|+.+++.++ ... .++ .+..+++|+.+.+.+ .+..
T Consensus 248 ~~L~~i~lp~--~i~~I~~~aF~---------~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~ 313 (401)
T 4fdw_A 248 SGITTVKLPN--GVTNIASRAFY---------YCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRI 313 (401)
T ss_dssp CCCSEEEEET--TCCEECTTTTT---------TCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCCT--TCCE
T ss_pred CCccEEEeCC--CccEEChhHhh---------CCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeCC--ceEE
Confidence 3455555532 34444444333 5667777776654 221 232 455667777776653 1333
Q ss_pred ecccCccccCCCCCCCCccCCCcCeeeccccccccccccC-CcCCCCccEEEecCCCCCCCCCCCCcccc-ccceEeeeh
Q 045137 209 IISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSIFWK-PLPFTHLKEMGVRACDQLRKLPLDSNSAK-ERKFVIRGE 286 (312)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~~~-~~l~~i~~~ 286 (312)
+-. ..-..+++|+.+.+.. +++.+... +..+ +|+.+.+.+. .+..++.+..... ..+..++.+
T Consensus 314 I~~-----------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 314 LGQ-----------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp ECT-----------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEEC
T ss_pred Ehh-----------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeC
Confidence 211 1224456777777744 35555543 3445 8888888874 5555665554443 456666666
Q ss_pred Hhhhhh----ccccc
Q 045137 287 EDWWNR----LQWED 297 (312)
Q Consensus 287 ~~~~~~----~~~~~ 297 (312)
.+..+. -.|++
T Consensus 379 ~~~~~~y~~a~~W~~ 393 (401)
T 4fdw_A 379 AESVEKYKNANGWRD 393 (401)
T ss_dssp GGGHHHHHHSTTGGG
T ss_pred HHHHHHhhhccchhh
Confidence 544333 45665
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.64 E-value=7.3e-09 Score=99.61 Aligned_cols=97 Identities=21% Similarity=0.103 Sum_probs=64.1
Q ss_pred cccCCCCCccccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc
Q 045137 2 LDISHTTIRELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL 81 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (312)
|+|++|.+..+|..+..+++|++|+|++| .+..+|.. +++|++|++|++++|.+..+| ..+.
T Consensus 229 L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp----------------~~~~ 290 (727)
T 4b8c_D 229 LDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAE-IKNLSNLRVLDLSHNRLTSLP----------------AELG 290 (727)
T ss_dssp EECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGG-GGGGTTCCEEECTTSCCSSCC----------------SSGG
T ss_pred EECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChh-hhCCCCCCEEeCcCCcCCccC----------------hhhc
Confidence 67788888888877778888888888888 67777776 788888888888888775433 3344
Q ss_pred CCCCceEEEEEecChhhHH-HHhhcccccccceEEEEeec
Q 045137 82 GLKYLEVLELTLGSYHALQ-ILLSSNKLKSCIRSLYLYLT 120 (312)
Q Consensus 82 ~L~~L~~l~l~~~~~~~~~-~l~~l~~l~~~L~~L~l~~~ 120 (312)
.|.+|+.|+++.+....++ .+..++ +|+.|+++++
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~~~~~l~----~L~~L~L~~N 326 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPWEFGNLC----NLQFLGVEGN 326 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCSSTTSCT----TCCCEECTTS
T ss_pred CCCCCCEEECCCCCCCccChhhhcCC----CccEEeCCCC
Confidence 5555666666555443332 233344 5566665554
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.62 E-value=2e-08 Score=78.43 Aligned_cols=37 Identities=30% Similarity=0.298 Sum_probs=16.4
Q ss_pred ccceEeecCCCCccc--CCccCCCCCCceEEEeeccccc
Q 045137 171 SLHLVTIYSCHKLKD--STFLAFAPNLKSLSLFKCRAME 207 (312)
Q Consensus 171 ~L~~L~l~~~~~l~~--l~~l~~l~~L~~L~l~~~~~~~ 207 (312)
+|++|+|++|.++++ +..+..+++|++|++++|+.++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 444444444444444 2233344444444444444433
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.57 E-value=6.9e-07 Score=79.78 Aligned_cols=222 Identities=9% Similarity=0.094 Sum_probs=140.1
Q ss_pred CCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCc
Q 045137 8 TIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYL 86 (312)
Q Consensus 8 ~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 86 (312)
.|+.++ ..|.+ .+|+.+.+..+ +..++..+|.++ +|+.+.+.. .+.. .....+..+.+|
T Consensus 123 ~i~~I~~~aF~~-~~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~---------------I~~~aF~~c~~L 182 (401)
T 4fdw_A 123 SVKSIPKDAFRN-SQIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQ---------------LKEDIFYYCYNL 182 (401)
T ss_dssp TCCEECTTTTTT-CCCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCE---------------ECSSTTTTCTTC
T ss_pred ccCEehHhhccc-CCccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccE---------------ehHHHhhCcccC
Confidence 345554 44555 47888888665 777777777775 688888875 3433 223445666777
Q ss_pred eEEEEEecChhhHHH-HhhcccccccceEEEEeecCCCccccchhhhcCccccceEEeccCcCcceeeeeccccccccCC
Q 045137 87 EVLELTLGSYHALQI-LLSSNKLKSCIRSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRRE 165 (312)
Q Consensus 87 ~~l~l~~~~~~~~~~-l~~l~~l~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 165 (312)
+.+++..+....++. ..... .|+.+.+.. ....... .++..+++|+.+.+.+ .+..++...+.
T Consensus 183 ~~l~l~~n~l~~I~~~aF~~~----~L~~l~lp~--~l~~I~~-~aF~~~~~L~~l~l~~--~l~~I~~~aF~------- 246 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFVYA----GIEEVLLPV--TLKEIGS-QAFLKTSQLKTIEIPE--NVSTIGQEAFR------- 246 (401)
T ss_dssp CEEECTTSCCSEECTTTTTTC----CCSEEECCT--TCCEECT-TTTTTCTTCCCEECCT--TCCEECTTTTT-------
T ss_pred CeeecCCCcceEechhhEeec----ccCEEEeCC--chheehh-hHhhCCCCCCEEecCC--CccCccccccc-------
Confidence 777765433322221 01112 677776653 2222222 5778888999999986 56777666553
Q ss_pred CCcccccceEeecCCCCcccCC--ccCCCCCCceEEEeeccccce---ecccCccccCCCCCCCCccCCCcCeeeccccc
Q 045137 166 PFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFKCRAMEE---IISVGKIAENPEMMGHISPFENLKSLDLSYLP 240 (312)
Q Consensus 166 ~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 240 (312)
. .+|+.+.+.+ .+..++ .+..+++|+.+.+.++..... .++. ..-..+++|+.+.+.+
T Consensus 247 --~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~----------~aF~~c~~L~~l~l~~-- 309 (401)
T 4fdw_A 247 --E-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP----------YCLEGCPKLARFEIPE-- 309 (401)
T ss_dssp --T-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT----------TTTTTCTTCCEECCCT--
T ss_pred --c-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECH----------HHhhCCccCCeEEeCC--
Confidence 3 7899999965 466665 788899999999987543211 0110 1335678899988874
Q ss_pred cccccccC-CcCCCCccEEEecCCCCCCCCCCCCccccccceEeee
Q 045137 241 ELKSIFWK-PLPFTHLKEMGVRACDQLRKLPLDSNSAKERKFVIRG 285 (312)
Q Consensus 241 ~l~~~~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~i~~ 285 (312)
+++.+... +..+++|+.+.+.. +++.++....... .++.+..
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l 352 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKV 352 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEE
T ss_pred ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEE
Confidence 46666654 45578899998853 4777776666665 6666654
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.51 E-value=6e-08 Score=84.88 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=69.2
Q ss_pred cccCCC-CCccccHHhhCCCCCcEEecCC-CCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhh
Q 045137 2 LDISHT-TIRELPEELKLLVNLKCLNLRW-TGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE 79 (312)
Q Consensus 2 L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~-~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
++.+++ .++.+|. +..+.+|++|+|++ | .+..+|+..|+++++|++|++++|.+.. .....
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~---------------~~~~~ 75 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRF---------------VAPDA 75 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCE---------------ECTTG
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccce---------------eCHHH
Confidence 466776 7888888 88888889999886 7 8888887668888889999988888754 33345
Q ss_pred ccCCCCceEEEEEecChhhHHH-HhhcccccccceEEEEeec
Q 045137 80 LLGLKYLEVLELTLGSYHALQI-LLSSNKLKSCIRSLYLYLT 120 (312)
Q Consensus 80 l~~L~~L~~l~l~~~~~~~~~~-l~~l~~l~~~L~~L~l~~~ 120 (312)
+..|.+|+.|+++.+....++. ..... .|+.|++.+.
T Consensus 76 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~----~L~~l~l~~N 113 (347)
T 2ifg_A 76 FHFTPRLSRLNLSFNALESLSWKTVQGL----SLQELVLSGN 113 (347)
T ss_dssp GGSCSCCCEEECCSSCCSCCCSTTTCSC----CCCEEECCSS
T ss_pred hcCCcCCCEEeCCCCccceeCHHHcccC----CceEEEeeCC
Confidence 6777888888887766543331 11111 3666766654
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.43 E-value=5.1e-07 Score=70.45 Aligned_cols=99 Identities=16% Similarity=0.251 Sum_probs=53.1
Q ss_pred cCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhhHHHHhhccc---ccccc
Q 045137 36 IPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNK---LKSCI 112 (312)
Q Consensus 36 lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~~l~~l~~---l~~~L 112 (312)
+|.....+ .+|+.|++++|.++. ..+..+..+++|+.|+++.+...+...+..+.. .+.+|
T Consensus 53 LP~~~~~~-~~L~~LDLs~~~Itd---------------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L 116 (176)
T 3e4g_A 53 LPTGPLDK-YKIQAIDATDSCIMS---------------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116 (176)
T ss_dssp SCCCSTTC-CCEEEEEEESCCCCG---------------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHC
T ss_pred CCcccCCC-ceEeEEeCcCCCccH---------------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCC
Confidence 55542223 468888888887643 445556666667767666543323333322221 12245
Q ss_pred eEEEEeecCCCccccchhhhcCccccceEEeccCcCcce
Q 045137 113 RSLYLYLTGDKKSIIDATAFTDLNHLNELWIDNGIELEE 151 (312)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 151 (312)
++|++++|...++..+ ..+..+++|++|++++|..+++
T Consensus 117 ~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 117 LEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTCCC
T ss_pred CEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCCCc
Confidence 6666666655555544 4445555566666665554443
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.37 E-value=6e-08 Score=85.80 Aligned_cols=160 Identities=14% Similarity=0.058 Sum_probs=94.4
Q ss_pred CCCCcEEecCCCCCccccCchhhhcc-----ccccEEEEecccccccccCCCCccccCCccchhhh-ccCCCCceEEEEE
Q 045137 19 LVNLKCLNLRWTGALIRIPRGLISKF-----SRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQE-LLGLKYLEVLELT 92 (312)
Q Consensus 19 L~~L~~L~L~~~~~~~~lp~~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~l~l~ 92 (312)
+++|++|+|++| .+.......+..+ ++|++|++++|.+.. ..... ...+.+|+.|+++
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~---------------~~~~~l~~~L~~L~~L~Ls 134 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP---------------AGLRTLLPVFLRARKLGLQ 134 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH---------------HHHHHTHHHHHTEEEEECC
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH---------------HHHHHHHHHHHhccHhhcC
Confidence 467888888888 5654333223333 688888888887642 22222 2234567788887
Q ss_pred ecChhh--HHHHhhc-ccccccceEEEEeecCCCc--cccchhhhcCccccceEEeccCcCcceeeee----cccccccc
Q 045137 93 LGSYHA--LQILLSS-NKLKSCIRSLYLYLTGDKK--SIIDATAFTDLNHLNELWIDNGIELEELKID----YTEIVRKR 163 (312)
Q Consensus 93 ~~~~~~--~~~l~~l-~~l~~~L~~L~l~~~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~----~~~~~~~~ 163 (312)
.+.... ...+... ..-...|+.|+++++.... ...+...+...++|++|+++++ .+...+.. .+.
T Consensus 135 ~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~----- 208 (372)
T 3un9_A 135 LNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLD----- 208 (372)
T ss_dssp SSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGG-----
T ss_pred CCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHh-----
Confidence 665422 2222111 0011268888888774321 1223345567788999999876 45443321 122
Q ss_pred CCCCcccccceEeecCCCCcccCC------ccCCCCCCceEEEeeccc
Q 045137 164 REPFVFHSLHLVTIYSCHKLKDST------FLAFAPNLKSLSLFKCRA 205 (312)
Q Consensus 164 ~~~~~~~~L~~L~l~~~~~l~~l~------~l~~l~~L~~L~l~~~~~ 205 (312)
..++|+.|++++| .+++.. .+...++|++|++++|..
T Consensus 209 ----~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 209 ----RNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp ----GCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred ----cCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 4578999999988 666521 234568899999988864
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.37 E-value=3.6e-08 Score=87.23 Aligned_cols=174 Identities=17% Similarity=0.064 Sum_probs=91.7
Q ss_pred cccccEEEEecccccccccCCCCccccCCccchhhhccC-CCCceEEEEEecChhhHHHHhhcccccccceEEEEeecCC
Q 045137 44 FSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLG-LKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLYLTGD 122 (312)
Q Consensus 44 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~~l~l~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~ 122 (312)
+++|+.|++++|.+...+. ......+.. ..+|+.|+++.+.... ..+..+.....+++.|+++++.-
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~-----------~~l~~~L~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKC-----------TVVAAVLGSGRHALDEVNLASCQLDP-AGLRTLLPVFLRARKLGLQLNSL 138 (372)
T ss_dssp HTTCCEEECTTSCCCHHHH-----------HHHHHHHSSCSSCEEEEECTTCCCCH-HHHHHTHHHHHTEEEEECCSSCC
T ss_pred HhhCCEEEecCCCCCHHHH-----------HHHHHHHhhCCCCceEEEecCCCCCH-HHHHHHHHHHHhccHhhcCCCCC
Confidence 5678888888887753211 011122222 2578888887665422 11111111112678888887643
Q ss_pred Cccc--cchhhh-cCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccC-----C-ccCCCC
Q 045137 123 KKSI--IDATAF-TDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDS-----T-FLAFAP 193 (312)
Q Consensus 123 ~~~~--~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~-~l~~l~ 193 (312)
.... .+...+ ...++|++|++++| .+...+...+.. .. . ..++|++|+|++| .+.+. . .+...+
T Consensus 139 ~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~--~L--~-~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 139 GPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLME--GL--A-GNTSVTHLSLLHT-GLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp CHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHH--HH--H-TCSSCCEEECTTS-SCHHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHH--HH--h-cCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCC
Confidence 2111 111222 24567888888876 444332222100 00 0 4677888888888 56542 2 355677
Q ss_pred CCceEEEeeccccceecccCccccCCCCCCCCccCCCcCeeecccccccccc
Q 045137 194 NLKSLSLFKCRAMEEIISVGKIAENPEMMGHISPFENLKSLDLSYLPELKSI 245 (312)
Q Consensus 194 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 245 (312)
+|++|++++|........ .+.......++|++|+++++. +...
T Consensus 212 ~L~~L~Ls~N~i~~~g~~--------~l~~~L~~~~~L~~L~Ls~N~-i~~~ 254 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAAL--------ALARAAREHPSLELLHLYFNE-LSSE 254 (372)
T ss_dssp CCCEEECCSSCCCHHHHH--------HHHHHHHHCSSCCEEECTTSS-CCHH
T ss_pred CcCeEECCCCCCCHHHHH--------HHHHHHHhCCCCCEEeccCCC-CCHH
Confidence 888888888764322100 000123345778888888763 5443
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.34 E-value=3.8e-07 Score=79.74 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=64.2
Q ss_pred CcccCC-CCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhh
Q 045137 1 LLDISH-TTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQ 78 (312)
Q Consensus 1 ~L~Ls~-~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (312)
+|+|++ |.+..+| ..|+.|++|++|+|++| .+..+++..|.++++|++|++++|.+..+|. .
T Consensus 35 ~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---------------~ 98 (347)
T 2ifg_A 35 ELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSW---------------K 98 (347)
T ss_dssp EEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCS---------------T
T ss_pred EEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCH---------------H
Confidence 378996 9999987 77999999999999999 8999988779999999999999999876442 1
Q ss_pred hccCCCCceEEEEEecCh
Q 045137 79 ELLGLKYLEVLELTLGSY 96 (312)
Q Consensus 79 ~l~~L~~L~~l~l~~~~~ 96 (312)
.+..+. |+.|++..+..
T Consensus 99 ~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp TTCSCC-CCEEECCSSCC
T ss_pred HcccCC-ceEEEeeCCCc
Confidence 223333 88888876644
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.18 E-value=2.1e-06 Score=75.42 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=8.9
Q ss_pred hhccccccEEEEecc
Q 045137 41 ISKFSRLRVLRMLGT 55 (312)
Q Consensus 41 i~~l~~L~~L~l~~~ 55 (312)
+..+++|+.|++.+|
T Consensus 168 l~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGT 182 (362)
T ss_dssp HHTCTTCCEEEEECC
T ss_pred HhcCCCCcEEEEeCC
Confidence 455566666666554
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.81 E-value=2.4e-05 Score=68.63 Aligned_cols=63 Identities=25% Similarity=0.315 Sum_probs=41.4
Q ss_pred cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhcc--CCCCceE
Q 045137 11 ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELL--GLKYLEV 88 (312)
Q Consensus 11 ~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~~ 88 (312)
.++..+..+++|+.|+|++|..+ .++. +. +++|++|++..|.+.. ..+..+. .+++|+.
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~~---------------~~l~~l~~~~lp~L~~ 223 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLPD---------------SVVEDILGSDLPNLEK 223 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCCH---------------HHHHHHHHSBCTTCCE
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCCh---------------HHHHHHHHccCCCCcE
Confidence 45566778889999999887323 3444 33 7889999988776632 3333333 5677777
Q ss_pred EEEE
Q 045137 89 LELT 92 (312)
Q Consensus 89 l~l~ 92 (312)
|+++
T Consensus 224 L~L~ 227 (362)
T 2ra8_A 224 LVLY 227 (362)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7765
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=3e-05 Score=64.89 Aligned_cols=79 Identities=24% Similarity=0.263 Sum_probs=54.5
Q ss_pred cccCCCCCccccHHh----hCCCCCcEEecCCCCCccccCc--hhhhccccccEEEEecccccccccCCCCccccCCccc
Q 045137 2 LDISHTTIRELPEEL----KLLVNLKCLNLRWTGALIRIPR--GLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEV 75 (312)
Q Consensus 2 L~Ls~~~i~~lp~~i----~~L~~L~~L~L~~~~~~~~lp~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 75 (312)
++++.|....++..+ .++++|+.|+|++| .+..++. ..+..+++|+.|++++|.+..+ .
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--------------~ 212 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE--------------R 212 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--------------G
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc--------------h
Confidence 345566544444322 57899999999999 7776542 2367999999999999988632 2
Q ss_pred hhhhccCCCCceEEEEEecCh
Q 045137 76 LIQELLGLKYLEVLELTLGSY 96 (312)
Q Consensus 76 ~~~~l~~L~~L~~l~l~~~~~ 96 (312)
.+..+..+ +|+.|++..+..
T Consensus 213 ~l~~l~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 213 ELDKIKGL-KLEELWLDGNSL 232 (267)
T ss_dssp GGGGGTTS-CCSEEECTTSTT
T ss_pred hhhhcccC-CcceEEccCCcC
Confidence 34444444 788888876654
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.42 E-value=9.7e-05 Score=61.77 Aligned_cols=55 Identities=25% Similarity=0.267 Sum_probs=45.5
Q ss_pred CcccCCCCCcccc---HHhhCCCCCcEEecCCCCCccccCchhhhccc--cccEEEEeccccc
Q 045137 1 LLDISHTTIRELP---EELKLLVNLKCLNLRWTGALIRIPRGLISKFS--RLRVLRMLGTGGF 58 (312)
Q Consensus 1 ~L~Ls~~~i~~lp---~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~--~L~~L~l~~~~~~ 58 (312)
.|+|++|.++.++ ..++.+++|++|+|++| .+..+.. +..+. +|++|++.+|.+.
T Consensus 174 ~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 174 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE--LDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp EEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG--GGGGTTSCCSEEECTTSTTG
T ss_pred EEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh--hhhcccCCcceEEccCCcCc
Confidence 3789999998654 67789999999999999 7887733 56565 9999999999875
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.33 E-value=0.00015 Score=57.18 Aligned_cols=119 Identities=13% Similarity=0.006 Sum_probs=73.9
Q ss_pred ccHHhhCCCCCcEEecCCCCCccc-----cCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCc
Q 045137 12 LPEELKLLVNLKCLNLRWTGALIR-----IPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYL 86 (312)
Q Consensus 12 lp~~i~~L~~L~~L~L~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 86 (312)
+...+...+.|++|+|++|..+.. +... +...++|++|++++|.+..-+ .......+...++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i~~~g-----------~~~l~~~L~~n~~L 95 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGTRSNDPV-----------AFALAEMLKVNNTL 95 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTSCCCHHH-----------HHHHHHHHHHCSSC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCCCCChHH-----------HHHHHHHHHhCCCc
Confidence 345567788999999998833332 3332 566788999999998875311 11223445566788
Q ss_pred eEEEEEecChhh--H----HHHhhcccccccceEEEE--eecCCCcc--ccchhhhcCccccceEEeccC
Q 045137 87 EVLELTLGSYHA--L----QILLSSNKLKSCIRSLYL--YLTGDKKS--IIDATAFTDLNHLNELWIDNG 146 (312)
Q Consensus 87 ~~l~l~~~~~~~--~----~~l~~l~~l~~~L~~L~l--~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~ 146 (312)
+.|+++.+.... . ..+...+ .|+.|++ .++..... ..+...+...+.|++|+++++
T Consensus 96 ~~L~L~~N~i~~~g~~~l~~~L~~n~----~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 96 KSLNVESNFISGSGILALVEALQSNT----SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CEEECCSSCCCHHHHHHHHHGGGGCS----SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CEEECcCCcCCHHHHHHHHHHHHhCC----CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 899988775532 1 2233333 7899998 54432211 123355666678999999875
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.26 E-value=0.003 Score=55.83 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=21.3
Q ss_pred HhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecc
Q 045137 15 ELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGT 55 (312)
Q Consensus 15 ~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~ 55 (312)
.|..+.+|+.+.+..+ +..++.+++.++.+|+.+.+..+
T Consensus 157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC
Confidence 3455566666666543 34455555666666666655443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.15 E-value=0.00022 Score=56.29 Aligned_cols=123 Identities=12% Similarity=-0.036 Sum_probs=70.2
Q ss_pred hhhccccccEEEEecc-cccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhh--H----HHHhhcccccccc
Q 045137 40 LISKFSRLRVLRMLGT-GGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA--L----QILLSSNKLKSCI 112 (312)
Q Consensus 40 ~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~--~----~~l~~l~~l~~~L 112 (312)
++...++|++|++++| .+..-. .......+...++|+.|+++.+.... . ..+...+ .|
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g-----------~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~----~L 95 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPT-----------LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN----TL 95 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHH-----------HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS----SC
T ss_pred HHhcCCCCCEEEecCCCCCCHHH-----------HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC----Cc
Confidence 3566788899998888 664311 11233455666788888887665421 1 1233333 78
Q ss_pred eEEEEeecCCCcc--ccchhhhcCccccceEEe--ccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcc
Q 045137 113 RSLYLYLTGDKKS--IIDATAFTDLNHLNELWI--DNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLK 184 (312)
Q Consensus 113 ~~L~l~~~~~~~~--~~~~~~l~~l~~L~~L~l--~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 184 (312)
++|+++++..... ..+...+...++|++|++ +++ .+...+...+.. ... ..++|++|++++| .+.
T Consensus 96 ~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~--~L~---~n~~L~~L~L~~n-~i~ 164 (185)
T 1io0_A 96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIAN--MLE---KNTTLLKFGYHFT-QQG 164 (185)
T ss_dssp CEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHH--HHH---HCSSCCEEECCCS-SHH
T ss_pred CEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHH--HHH---hCCCcCEEeccCC-CCC
Confidence 8888887643221 123356666678888888 543 444332211110 000 4578888888887 443
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.10 E-value=0.00043 Score=51.16 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=44.3
Q ss_pred cccCCCCCc--cccHHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEeccccc
Q 045137 2 LDISHTTIR--ELPEELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGTGGF 58 (312)
Q Consensus 2 L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~~~~ 58 (312)
++-+++.++ .+|.++ -.+|++|+|++| .+..+|.+++..+++|++|++.+|.+.
T Consensus 13 v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 13 VDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 456777887 888532 247999999999 899999998999999999999998763
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.06 E-value=0.0021 Score=56.94 Aligned_cols=45 Identities=7% Similarity=0.115 Sum_probs=36.6
Q ss_pred Ccccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecc
Q 045137 9 IRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGT 55 (312)
Q Consensus 9 i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~ 55 (312)
|+.++ ..|.++.+|+.+.+.. .++.++..+|.+|.+|+.+++..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~ 104 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS 104 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC
Confidence 45565 5678889999999975 488898888999999999999764
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.03 E-value=0.011 Score=52.08 Aligned_cols=43 Identities=7% Similarity=0.157 Sum_probs=22.9
Q ss_pred Ccccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEe
Q 045137 9 IRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRML 53 (312)
Q Consensus 9 i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~ 53 (312)
++.++ ..|..+.+|+.+.+..+ +..++..++..+.+|+.+.+.
T Consensus 102 l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp 145 (394)
T 4gt6_A 102 VKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIP 145 (394)
T ss_dssp CCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECC
T ss_pred eeEechhhchhcccceeeccCCc--cceehhhhhhhhccccccccc
Confidence 33443 34555566665555432 445555555666666666654
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.36 E-value=0.065 Score=47.15 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=35.8
Q ss_pred Ccccc-HHhhCCCCCcEEecCCCC--CccccCchhhhccccccEEEEecc
Q 045137 9 IRELP-EELKLLVNLKCLNLRWTG--ALIRIPRGLISKFSRLRVLRMLGT 55 (312)
Q Consensus 9 i~~lp-~~i~~L~~L~~L~L~~~~--~~~~lp~~~i~~l~~L~~L~l~~~ 55 (312)
|+.++ ..|.++.+|+.+.+..+. .+..++..+|..+.+|+.+.+..+
T Consensus 75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~ 124 (394)
T 4gt6_A 75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS 124 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT
T ss_pred eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc
Confidence 44454 457888999999997652 477888888999999998877543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.22 E-value=0.088 Score=45.94 Aligned_cols=34 Identities=3% Similarity=-0.024 Sum_probs=16.7
Q ss_pred CCCCCcEEecCCCCCccccCchhhhccccccEEEEe
Q 045137 18 LLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRML 53 (312)
Q Consensus 18 ~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~ 53 (312)
.-.+|+.+.+.. .++.|+..+|.+|.+|+.+.+.
T Consensus 44 ~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp 77 (379)
T 4h09_A 44 DRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVA 77 (379)
T ss_dssp GGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEEC
T ss_pred cccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeC
Confidence 334455554433 2444555555555555555554
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.59 E-value=0.034 Score=40.77 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=27.7
Q ss_pred CcccCCCCCcccc-HHhhCCCCCcEEecCCCC
Q 045137 1 LLDISHTTIRELP-EELKLLVNLKCLNLRWTG 31 (312)
Q Consensus 1 ~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~ 31 (312)
+|+|++|.|+.+| ..|..+++|++|+|++|.
T Consensus 35 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 35 ELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4799999999998 667899999999999993
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.97 E-value=0.41 Score=41.59 Aligned_cols=61 Identities=21% Similarity=0.179 Sum_probs=44.2
Q ss_pred hhhcCccccceEEeccCcCcceeeeeccccccccCCCCcccccceEeecCCCCcccCC--ccCCCCCCceEEEee
Q 045137 130 TAFTDLNHLNELWIDNGIELEELKIDYTEIVRKRREPFVFHSLHLVTIYSCHKLKDST--FLAFAPNLKSLSLFK 202 (312)
Q Consensus 130 ~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~ 202 (312)
.++..+.+|+.+.+.+. .++.++...+. .+.+|+.+.+.+ .++.+. .+.++.+|+.+.+..
T Consensus 280 ~aF~~c~~L~~i~l~~~-~i~~I~~~aF~---------~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNS-AIETLEPRVFM---------DCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTTCTTCCEEEECCT-TCCEECTTTTT---------TCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccccc-ccceehhhhhc---------CCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 46677788888888643 56666655554 788899998865 366655 677888999888754
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.39 E-value=0.18 Score=39.73 Aligned_cols=118 Identities=14% Similarity=0.008 Sum_probs=67.2
Q ss_pred hhCCCCCcEEecCCCCCccc-----cCchhhhccccccEEEEecccccccccCCCCccccCCccchhhhccCCCCceEEE
Q 045137 16 LKLLVNLKCLNLRWTGALIR-----IPRGLISKFSRLRVLRMLGTGGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLE 90 (312)
Q Consensus 16 i~~L~~L~~L~L~~~~~~~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~ 90 (312)
..+-+.|+.|+|+++..+.. +-. ++..-..|+.|++++|.+..-.. ......|..-+.|+.|+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~-aL~~N~~L~~L~L~~n~igd~ga-----------~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTAISDSEA-----------RGLIELIETSPSLRVLN 104 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHHH-----------TTHHHHHHHCSSCCEEE
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHH-HHhhCCCcCEEEccCCCCChHHH-----------HHHHHHHhcCCccCeEe
Confidence 34557899999987534443 222 24555789999999888854221 13334455567788888
Q ss_pred EEecChh--hHHHHhhcccccccceEEEEeecCC--Ccc---ccchhhhcCccccceEEecc
Q 045137 91 LTLGSYH--ALQILLSSNKLKSCIRSLYLYLTGD--KKS---IIDATAFTDLNHLNELWIDN 145 (312)
Q Consensus 91 l~~~~~~--~~~~l~~l~~l~~~L~~L~l~~~~~--~~~---~~~~~~l~~l~~L~~L~l~~ 145 (312)
++.+.+. ....+...-..-..|+.|++.++.. ... ..+...+..-+.|+.|+++.
T Consensus 105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred cCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 8866542 1222211111112688888875321 111 12334566556788888864
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.20 E-value=0.32 Score=38.29 Aligned_cols=89 Identities=15% Similarity=-0.001 Sum_probs=42.7
Q ss_pred hccccccEEEEecc-cccccccCCCCccccCCccchhhhccCCCCceEEEEEecChhh-----H-HHHhhcccccccceE
Q 045137 42 SKFSRLRVLRMLGT-GGFIFYEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA-----L-QILLSSNKLKSCIRS 114 (312)
Q Consensus 42 ~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~-----~-~~l~~l~~l~~~L~~ 114 (312)
.+-+.|++|+++++ .+..-+ .......|..-+.|+.|+++.+.... + ..+..-+ .|++
T Consensus 38 ~~n~~L~~L~L~~nn~igd~g-----------a~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~----tL~~ 102 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKER-----------IRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP----SLRV 102 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHH-----------HHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS----SCCE
T ss_pred hcCCCccEEECCCCCCCCHHH-----------HHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCC----ccCe
Confidence 33456777777664 442110 11233445555667777766554321 1 1222223 5677
Q ss_pred EEEeecCCCc--cccchhhhcCccccceEEecc
Q 045137 115 LYLYLTGDKK--SIIDATAFTDLNHLNELWIDN 145 (312)
Q Consensus 115 L~l~~~~~~~--~~~~~~~l~~l~~L~~L~l~~ 145 (312)
|+++...... ...+..++..-..|++|++++
T Consensus 103 L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 103 LNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp EECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred EecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 7776543221 112223444445577777764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=80.61 E-value=1.5 Score=30.20 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=41.2
Q ss_pred CCCCCcccc-HHhhCCCCCcEEecCCCCCccccCchhhhccccccEEEEecc
Q 045137 5 SHTTIRELP-EELKLLVNLKCLNLRWTGALIRIPRGLISKFSRLRVLRMLGT 55 (312)
Q Consensus 5 s~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~~i~~l~~L~~L~l~~~ 55 (312)
.|..|+.+. ..|..+.+|+.+.+-.+ +..|...+|.+|.+|+.+.+...
T Consensus 4 ~g~~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 4 EGEPVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCCccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCC
Confidence 355778886 77899999999999875 77888888999999999999764
Done!