BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045139
(820 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 176/615 (28%), Positives = 271/615 (44%), Gaps = 101/615 (16%)
Query: 287 SAFPNPTSLSYLDLSNNQL---VSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCS 343
S F SL+ LDLS N L V+ S + L+ L SN L P K+S
Sbjct: 91 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPG---KVSGGL 145
Query: 344 R-DTLEILQLNSNMLRGS------LPDITLFSSLKELHLYDNM------------LDVLY 384
+ ++LE+L L++N + G+ L D LK L + N L+ L
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVDVSRCVNLEFLD 203
Query: 385 LNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFG 444
+++N F+ T +G S L+ LD++ N L G + A +S + L L++S N +
Sbjct: 204 VSSNNFS-TGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV---- 257
Query: 445 SGWVPSFELNIIR---LGACKQGPQFPKWLQTQ-NKFSELDVSAAEISDTVPNWFWDLSP 500
G +P L ++ L K + P +L + + LD+S VP +F S
Sbjct: 258 -GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 316
Query: 501 ------------------------NLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANS 536
L L+LS N F+G LP+ +A +DLS+N+
Sbjct: 317 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 537 FEGPIPP-----IPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCS 591
F GPI P T+ L L N F+G + E L LS N LSG +P+
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSL 435
Query: 592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651
+ KL L L N G+IP + + + +L L N GE+PS + + T L + L
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC 711
+N+++G IP WIG L +L +L L +N+F G +P ++ + + LDL+ N +GT+P
Sbjct: 496 NNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 712 LNNLTA-MTANKSSNAMIRY----PLRTDYYNDHALLVWKRKDSEYRNTL---------- 756
+ + + AN + Y ++ + + LL ++ SE N L
Sbjct: 555 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 614
Query: 757 --------------GLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIG 801
G + +D+S N L G IP E+ S+ L LNL N ++G IP ++G
Sbjct: 615 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 674
Query: 802 GLTLLNSLDLSKNML 816
L LN LDLS N L
Sbjct: 675 DLRGLNILDLSSNKL 689
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 164/607 (27%), Positives = 250/607 (41%), Gaps = 69/607 (11%)
Query: 113 GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLS 172
G L +L + N G + N+ LD+S+ F+ +P+ LG+ ++LQ+LD+S
Sbjct: 173 GCGELKHLAISGNKISGD---VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 228
Query: 173 FN--FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPXX 230
N S+ + ++L L + NQ +G Q SL E + G +P
Sbjct: 229 GNKLSGDFSRAISTCTELKLLN-ISSNQF-VGPIPPLPLKSLQYLSLAENKFTG-EIPDF 285
Query: 231 XXXXXXXXXXXXXXLAHLDLSLNDVSNSVYYWLFNXXXXXXXXXXXXNKLQGPIPDSAFP 290
L LDLS N +V + F N G +P
Sbjct: 286 LSGACDT-------LTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 291 NPTSLSYLDLSNNQLVS-VPKSFRNL-CRLRALYQDSNNLTD-LLPNLFLKLSNCSRDTL 347
L LDLS N+ +P+S NL L L SNN + +LPNL ++TL
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN----PKNTL 393
Query: 348 EILQLNSNMLRGSLP-DITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLEL 406
+ L L +N G +P ++ S L LHL N L +GT+ S+G LS+L
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL----------SGTIPSSLGSLSKLRD 443
Query: 407 LDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQ 466
L + N L+G I + L + L L L N L SG LN I L + +
Sbjct: 444 LKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 467 FPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAY 526
PKW+ + L +S S +P D +L +L+L+ N F G +P K +
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSG- 560
Query: 527 PPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGE 586
++AN G + KN + C + + +
Sbjct: 561 ----KIAANFIAG---------KRYVYIKN---DGMKKECHGAGNLLEFQGIR------- 597
Query: 587 LPNCSKNWQKLTV---LNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFT 643
S+ +L+ N+ + + G + D N M+ L + N G +P + S
Sbjct: 598 ----SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 644 QLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNN 703
L +L+LGHN ISG IP +GD L L +L L SN GR+P + L + +DLS NN
Sbjct: 654 YLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 712
Query: 704 ISGTVPQ 710
+SG +P+
Sbjct: 713 LSGPIPE 719
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 156/614 (25%), Positives = 251/614 (40%), Gaps = 89/614 (14%)
Query: 81 VSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQ---HLNYLNMKYNDFGGKQIPAFIG 137
+S +N G V ++ + GN S + + +L +L++ N+F IP F+G
Sbjct: 160 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS-TGIP-FLG 217
Query: 138 SLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLN 197
++HLD+S +G + T L+ L++S N +++ + L L
Sbjct: 218 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN--------QFVGPIPPLPLKSLQ 269
Query: 198 QVNLGEATDWLQVVSQLPSLTELQLRGCNLPXXXXXXXXXXXXXXXXLAHLDLSLNDVSN 257
++L E + ++P C+ L LDLS N
Sbjct: 270 YLSLAEN----KFTGEIPDFLS---GACD-----------------TLTGLDLSGNHFYG 305
Query: 258 SVYYWLFNXXXXXXXXXXXXNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS-VPKSFRNL- 315
+V + F N G +P L LDLS N+ +P+S NL
Sbjct: 306 AVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 316 CRLRALYQDSNNLTD-LLPNLFLKLSNCSRDTLEILQLNSNMLRGSL-PDITLFSSLKEL 373
L L SNN + +LPNL ++TL+ L L +N G + P ++ S L L
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQN----PKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 420
Query: 374 HLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLD 433
HL N L +GT+ S+G LS+L L + N L+G I + L + L L
Sbjct: 421 HLSFNYL----------SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLI 469
Query: 434 LSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPN 493
L N L SG LN I L + + PKW+ + L +S S +P
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 494 WFWDLSPNLYYLNLSHNHFTGMLP--------DLSQKFTAYPPEIDLSANSFEGPIPPIP 545
D +L +L+L+ N F G +P ++ F A + + + +
Sbjct: 530 ELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH--- 585
Query: 546 LTVTSLILFKNMFSGSLSFL-----CQISDEHF--------------RYLDLSDNLLSGE 586
+L+ F+ + S L+ L C I+ + +LD+S N+LSG
Sbjct: 586 -GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 644
Query: 587 LPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLT 646
+P + L +LNL +N SG IPD + + L L +N G +P ++ + T LT
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 647 VLDLGHNKISGIIP 660
+DL +N +SG IP
Sbjct: 705 EIDLSNNNLSGPIP 718
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 133/445 (29%), Positives = 204/445 (45%), Gaps = 85/445 (19%)
Query: 384 YLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITE-AHLSNLSRLTYLDLSHNSLILN 442
+L+N+ G+++ + L LD++ NSL G +T L + S L +L++S N+L +
Sbjct: 80 FLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 136
Query: 443 FGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDT-VPNWFW-DLSP 500
F +LN + + LD+SA IS V W D
Sbjct: 137 FPGKVSGGLKLNSLEV---------------------LDLSANSISGANVVGWVLSDGCG 175
Query: 501 NLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSG 560
L +L +S N +G D+ +D+S+N+F IP F G
Sbjct: 176 ELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIP---------------FLG 217
Query: 561 SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIP----DSMD 616
S L ++LD+S N LSG+ +L +LN+++N+F G IP S+
Sbjct: 218 DCSAL--------QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 269
Query: 617 FNCMMLSLHLRNNSFIGELPSSVK-SFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSL 675
+ L L N F GE+P + + LT LDL N G +P + G L L+L
Sbjct: 270 Y------LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLESLAL 322
Query: 676 RSNNFHGRVPVQ-VCHLQRIQVLDLSQNNISGTVPQCLNNLTA--MTANKSSNAMIRYPL 732
SNNF G +P+ + ++ ++VLDLS N SG +P+ L NL+A +T + SSN P+
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF-SGPI 381
Query: 733 RTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTS-LVGLISLNLSKNS 791
+ + +NTL + + L +N G+IP S L+SL+LS N
Sbjct: 382 LPNLCQNP------------KNTL---QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 792 LTGPIPSKIGGLTLLNSLDLSKNML 816
L+G IPS +G L+ L L L NML
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNML 451
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 203/778 (26%), Positives = 321/778 (41%), Gaps = 92/778 (11%)
Query: 44 RERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPL 103
RE L+ FK L D+ L W K+ C + GV+C + VT ++L S PL
Sbjct: 9 REIHQLISFKDVLPDK-NLLPDW---SSNKNPCTFDGVTCRDD--KVTSIDL---SSKPL 59
Query: 104 RGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLK---NIRHLDLSNAGFTGRVPY-- 158
N+ S + L+ ++ I + K ++ LDLS +G V
Sbjct: 60 --NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLT 117
Query: 159 QLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRL--NQVNLGEATDWLQVVSQLPS 216
LG+ + L++L++S N K+ +L+ LE + L N ++ W+ +
Sbjct: 118 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV-LSDGCGE 176
Query: 217 LTELQLRGCNLPXXXXXXXXXXXXXXXXLAHLDLSLNDVSNSVYYWLFNXXXXXXXXXXX 276
L L + G + L LD+S N+ S + +
Sbjct: 177 LKHLAISGNKI------SGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDIS 228
Query: 277 XNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLF 336
NKL G A T L L++S+NQ V P L L+ L N T +P+
Sbjct: 229 GNKLSGDF-SRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFL 286
Query: 337 LKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTL-T 395
+ + DTL L L+ N G++P F S L N F+G L
Sbjct: 287 ----SGACDTLTGLDLSGNHFYGAVP--PFFGSCSLLESLALSS-------NNFSGELPM 333
Query: 396 KSIGQLSQLELLDVASNSLKGMITEAHLSNLS-RLTYLDLSHNSLILNFGSGWVPSFELN 454
++ ++ L++LD++ N G + E+ L+NLS L LDLS N NF
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSN----NF----------- 377
Query: 455 IIRLGACKQGPQFPKWLQT-QNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFT 513
GP P Q +N EL + + +P + S L L+LS N+ +
Sbjct: 378 --------SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLS 428
Query: 514 GMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPL---TVTSLILFKNMFSGSL-SFLCQIS 569
G +P + ++ L N EG IP + T+ +LIL N +G + S L +
Sbjct: 429 GTIPSSLGSLSKLR-DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 487
Query: 570 DEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNN 629
+ ++ LS+N L+GE+P + L +L L+NN FSG IP + ++ L L N
Sbjct: 488 N--LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Query: 630 SFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWI-GDSLPDLVVLSLRSNNFHGRVPVQV 688
F G +P+++ F Q + N I+G +I D + + F G Q+
Sbjct: 546 LFNGTIPAAM--FKQSG--KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 601
Query: 689 CHLQRIQVLDLSQNNISG-TVPQCLNNLTAMTANKSSNAMIRY-PLRTDYYNDHALLVWK 746
L +++ G T P NN + M + S N + Y P +L
Sbjct: 602 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 661
Query: 747 RKD------SEYRNTLGLVKSIDLSSNRLYGEIPE-VTSLVGLISLNLSKNSLTGPIP 797
D E + GL +DLSSN+L G IP+ +++L L ++LS N+L+GPIP
Sbjct: 662 HNDISGSIPDEVGDLRGL-NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 140/573 (24%), Positives = 217/573 (37%), Gaps = 107/573 (18%)
Query: 103 LRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVP-YQLG 161
L G+ S ++ L LN+ N F G P LK++++L L+ FTG +P + G
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSG 288
Query: 162 NLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQ 221
+L LDLS N + + F L + + ++ +LP T L+
Sbjct: 289 ACDTLTGLDLSGNH-------FYGAVPPFFGSCSLLESLALSSNNF---SGELPMDTLLK 338
Query: 222 LRGCNLPXXXXXXXXXXXXXXXXLAHLDLSLNDVSNSVYYWLFNXXXXXXXXXXXXNKLQ 281
+RG L LDLS N+ S + L N N
Sbjct: 339 MRG--------------------LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 282 GPIPDSAFPNP-TSLSYLDLSNNQLVS-VPKSFRNLCRLRALYQDSNNLTDLLPNLFLKL 339
GPI + NP +L L L NN +P + N L +L+ N L+ +P+ L
Sbjct: 379 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 340 SNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYD---------------NMLDVLY 384
S L L+L NML G +P ++ E + D L+ +
Sbjct: 439 S-----KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 493
Query: 385 LNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHN------- 437
L+NNR TG + K IG+L L +L +++NS G I A L + L +LDL+ N
Sbjct: 494 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTNLFNGTIP 552
Query: 438 --------SLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQ----NKFSELD---- 481
+ NF +G + N C ++ + N+ S +
Sbjct: 553 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 612
Query: 482 VSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPI 541
S T P + D + ++ +L++S+N +G +P Y ++L N G I
Sbjct: 613 TSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIPKEIGSM-PYLFILNLGHNDISGSI 669
Query: 542 PPIPLTVTSLILFKNMFSGSLSFLCQISD-EHFRYLDLSDNLLSGELPNCSKNWQKLTVL 600
P ++ D LDLS N L G +P LT +
Sbjct: 670 PD-----------------------EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 601 NLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
+L+NN SG IP+ F + L N G
Sbjct: 707 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 20/192 (10%)
Query: 629 NSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIG-DSLPDLVVLSLRSN--NFHGRVP 685
NS I S K LT LDL N +SG + S L L++ SN +F G+V
Sbjct: 83 NSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 142
Query: 686 VQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVW 745
+ L ++VLDLS N+ISG N+ + + + + +
Sbjct: 143 GGL-KLNSLEVLDLSANSISGA------NVVGWVLSDGCGELKHLAISGNKIS------- 188
Query: 746 KRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTL 805
D + + L + +D+SSN IP + L L++S N L+G I T
Sbjct: 189 --GDVDVSRCVNL-EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE 245
Query: 806 LNSLDLSKNMLM 817
L L++S N +
Sbjct: 246 LKLLNISSNQFV 257
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 176/615 (28%), Positives = 271/615 (44%), Gaps = 101/615 (16%)
Query: 287 SAFPNPTSLSYLDLSNNQL---VSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCS 343
S F SL+ LDLS N L V+ S + L+ L SN L P K+S
Sbjct: 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPG---KVSGGL 148
Query: 344 R-DTLEILQLNSNMLRGS------LPDITLFSSLKELHLYDNM------------LDVLY 384
+ ++LE+L L++N + G+ L D LK L + N L+ L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVDVSRCVNLEFLD 206
Query: 385 LNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFG 444
+++N F+ T +G S L+ LD++ N L G + A +S + L L++S N +
Sbjct: 207 VSSNNFS-TGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV---- 260
Query: 445 SGWVPSFELNIIR---LGACKQGPQFPKWLQTQ-NKFSELDVSAAEISDTVPNWFWDLSP 500
G +P L ++ L K + P +L + + LD+S VP +F S
Sbjct: 261 -GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319
Query: 501 ------------------------NLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANS 536
L L+LS N F+G LP+ +A +DLS+N+
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 537 FEGPIPP-----IPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCS 591
F GPI P T+ L L N F+G + E L LS N LSG +P+
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSL 438
Query: 592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651
+ KL L L N G+IP + + + +L L N GE+PS + + T L + L
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC 711
+N+++G IP WIG L +L +L L +N+F G +P ++ + + LDL+ N +GT+P
Sbjct: 499 NNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 712 LNNLTA-MTANKSSNAMIRY----PLRTDYYNDHALLVWKRKDSEYRNTL---------- 756
+ + + AN + Y ++ + + LL ++ SE N L
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 757 --------------GLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIG 801
G + +D+S N L G IP E+ S+ L LNL N ++G IP ++G
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677
Query: 802 GLTLLNSLDLSKNML 816
L LN LDLS N L
Sbjct: 678 DLRGLNILDLSSNKL 692
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 164/607 (27%), Positives = 250/607 (41%), Gaps = 69/607 (11%)
Query: 113 GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLS 172
G L +L + N G + N+ LD+S+ F+ +P+ LG+ ++LQ+LD+S
Sbjct: 176 GCGELKHLAISGNKISGD---VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231
Query: 173 FN--FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPXX 230
N S+ + ++L L + NQ +G Q SL E + G +P
Sbjct: 232 GNKLSGDFSRAISTCTELKLLN-ISSNQF-VGPIPPLPLKSLQYLSLAENKFTG-EIPDF 288
Query: 231 XXXXXXXXXXXXXXLAHLDLSLNDVSNSVYYWLFNXXXXXXXXXXXXNKLQGPIPDSAFP 290
L LDLS N +V + F N G +P
Sbjct: 289 LSGACDT-------LTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 291 NPTSLSYLDLSNNQLVS-VPKSFRNL-CRLRALYQDSNNLTD-LLPNLFLKLSNCSRDTL 347
L LDLS N+ +P+S NL L L SNN + +LPNL ++TL
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN----PKNTL 396
Query: 348 EILQLNSNMLRGSLP-DITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLEL 406
+ L L +N G +P ++ S L LHL N L +GT+ S+G LS+L
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL----------SGTIPSSLGSLSKLRD 446
Query: 407 LDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQ 466
L + N L+G I + L + L L L N L SG LN I L + +
Sbjct: 447 LKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 467 FPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAY 526
PKW+ + L +S S +P D +L +L+L+ N F G +P K +
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSG- 563
Query: 527 PPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGE 586
++AN G + KN + C + + +
Sbjct: 564 ----KIAANFIAG---------KRYVYIKN---DGMKKECHGAGNLLEFQGIR------- 600
Query: 587 LPNCSKNWQKLTV---LNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFT 643
S+ +L+ N+ + + G + D N M+ L + N G +P + S
Sbjct: 601 ----SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 644 QLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNN 703
L +L+LGHN ISG IP +GD L L +L L SN GR+P + L + +DLS NN
Sbjct: 657 YLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715
Query: 704 ISGTVPQ 710
+SG +P+
Sbjct: 716 LSGPIPE 722
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 156/614 (25%), Positives = 251/614 (40%), Gaps = 89/614 (14%)
Query: 81 VSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQ---HLNYLNMKYNDFGGKQIPAFIG 137
+S +N G V ++ + GN S + + +L +L++ N+F IP F+G
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS-TGIP-FLG 220
Query: 138 SLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLN 197
++HLD+S +G + T L+ L++S N +++ + L L
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN--------QFVGPIPPLPLKSLQ 272
Query: 198 QVNLGEATDWLQVVSQLPSLTELQLRGCNLPXXXXXXXXXXXXXXXXLAHLDLSLNDVSN 257
++L E + ++P C+ L LDLS N
Sbjct: 273 YLSLAEN----KFTGEIPDFLS---GACD-----------------TLTGLDLSGNHFYG 308
Query: 258 SVYYWLFNXXXXXXXXXXXXNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS-VPKSFRNL- 315
+V + F N G +P L LDLS N+ +P+S NL
Sbjct: 309 AVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 316 CRLRALYQDSNNLTD-LLPNLFLKLSNCSRDTLEILQLNSNMLRGSL-PDITLFSSLKEL 373
L L SNN + +LPNL ++TL+ L L +N G + P ++ S L L
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQN----PKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423
Query: 374 HLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLD 433
HL N L +GT+ S+G LS+L L + N L+G I + L + L L
Sbjct: 424 HLSFNYL----------SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLI 472
Query: 434 LSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPN 493
L N L SG LN I L + + PKW+ + L +S S +P
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 494 WFWDLSPNLYYLNLSHNHFTGMLP--------DLSQKFTAYPPEIDLSANSFEGPIPPIP 545
D +L +L+L+ N F G +P ++ F A + + + +
Sbjct: 533 ELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH--- 588
Query: 546 LTVTSLILFKNMFSGSLSFL-----CQISDEHF--------------RYLDLSDNLLSGE 586
+L+ F+ + S L+ L C I+ + +LD+S N+LSG
Sbjct: 589 -GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 587 LPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLT 646
+P + L +LNL +N SG IPD + + L L +N G +P ++ + T LT
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 647 VLDLGHNKISGIIP 660
+DL +N +SG IP
Sbjct: 708 EIDLSNNNLSGPIP 721
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 133/445 (29%), Positives = 204/445 (45%), Gaps = 85/445 (19%)
Query: 384 YLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITE-AHLSNLSRLTYLDLSHNSLILN 442
+L+N+ G+++ + L LD++ NSL G +T L + S L +L++S N+L +
Sbjct: 83 FLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 139
Query: 443 FGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDT-VPNWFW-DLSP 500
F +LN + + LD+SA IS V W D
Sbjct: 140 FPGKVSGGLKLNSLEV---------------------LDLSANSISGANVVGWVLSDGCG 178
Query: 501 NLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSG 560
L +L +S N +G D+ +D+S+N+F IP F G
Sbjct: 179 ELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIP---------------FLG 220
Query: 561 SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIP----DSMD 616
S L ++LD+S N LSG+ +L +LN+++N+F G IP S+
Sbjct: 221 DCSAL--------QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 272
Query: 617 FNCMMLSLHLRNNSFIGELPSSVK-SFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSL 675
+ L L N F GE+P + + LT LDL N G +P + G L L+L
Sbjct: 273 Y------LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLESLAL 325
Query: 676 RSNNFHGRVPVQ-VCHLQRIQVLDLSQNNISGTVPQCLNNLTA--MTANKSSNAMIRYPL 732
SNNF G +P+ + ++ ++VLDLS N SG +P+ L NL+A +T + SSN P+
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF-SGPI 384
Query: 733 RTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTS-LVGLISLNLSKNS 791
+ + +NTL + + L +N G+IP S L+SL+LS N
Sbjct: 385 LPNLCQNP------------KNTL---QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 792 LTGPIPSKIGGLTLLNSLDLSKNML 816
L+G IPS +G L+ L L L NML
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNML 454
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 204/782 (26%), Positives = 320/782 (40%), Gaps = 100/782 (12%)
Query: 44 RERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPL 103
RE L+ FK L D+ L W K+ C + GV+C + VT ++L S PL
Sbjct: 12 REIHQLISFKDVLPDK-NLLPDW---SSNKNPCTFDGVTCRDD--KVTSIDL---SSKPL 62
Query: 104 RGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLK---NIRHLDLSNAGFTGRVPY-- 158
N+ S + L+ ++ I + K ++ LDLS +G V
Sbjct: 63 --NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLT 120
Query: 159 QLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLT 218
LG+ + L++L++S N K+ +L+ LE + L+ ++ A V+S
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD----- 175
Query: 219 ELQLRGCNLPXXXXXXXXXXXXXXXXLAHLDLSLNDVSNSVYYWLFNXXXXXXXXXXXXN 278
GC L HL +S N +S V + N
Sbjct: 176 -----GCG-----------------ELKHLAISGNKISGDVDV---SRCVNLEFLDVSSN 210
Query: 279 KLQGPIPDSAFPNPTSLSYLDLSNNQLVS-VPKSFRNLCRLRALYQDSNNLTDLLPNLFL 337
IP + ++L +LD+S N+L ++ L+ L SN +P L L
Sbjct: 211 NFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL 268
Query: 338 KLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKS 397
K +L+ L L N G +PD L + L L L+ N F G +
Sbjct: 269 K-------SLQYLSLAENKFTGEIPDF--------LSGACDTLTGLDLSGNHFYGAVPPF 313
Query: 398 IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVP------SF 451
G S LE L ++SN+ G + L + L LDLS N SG +P S
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF-----SGELPESLTNLSA 368
Query: 452 ELNIIRLGACK-QGPQFPKWLQT-QNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSH 509
L + L + GP P Q +N EL + + +P + S L L+LS
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSF 427
Query: 510 NHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPL---TVTSLILFKNMFSGSL-SFL 565
N+ +G +P + ++ L N EG IP + T+ +LIL N +G + S L
Sbjct: 428 NYLSGTIPSSLGSLSKLR-DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 566 CQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLH 625
++ ++ LS+N L+GE+P + L +L L+NN FSG IP + ++ L
Sbjct: 487 SNCTN--LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Query: 626 LRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWI-GDSLPDLVVLSLRSNNFHGRV 684
L N F G +P+++ F Q + N I+G +I D + + F G
Sbjct: 545 LNTNLFNGTIPAAM--FKQSG--KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600
Query: 685 PVQVCHLQRIQVLDLSQNNISG-TVPQCLNNLTAMTANKSSNAMIRY-PLRTDYYNDHAL 742
Q+ L +++ G T P NN + M + S N + Y P +
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660
Query: 743 LVWKRKD------SEYRNTLGLVKSIDLSSNRLYGEIPE-VTSLVGLISLNLSKNSLTGP 795
L D E + GL +DLSSN+L G IP+ +++L L ++LS N+L+GP
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGL-NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719
Query: 796 IP 797
IP
Sbjct: 720 IP 721
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 140/575 (24%), Positives = 220/575 (38%), Gaps = 111/575 (19%)
Query: 103 LRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVP-YQLG 161
L G+ S ++ L LN+ N F G P LK++++L L+ FTG +P + G
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSG 291
Query: 162 NLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQ 221
+L LDLS N + + F L + + ++ +LP T L+
Sbjct: 292 ACDTLTGLDLSGNH-------FYGAVPPFFGSCSLLESLALSSNNF---SGELPMDTLLK 341
Query: 222 LRGCNLPXXXXXXXXXXXXXXXXLAHLDLSLNDVSNSVYYWLFNXXXXXXXXXXXXNKLQ 281
+RG L LDLS N+ S + L N N
Sbjct: 342 MRG--------------------LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 282 GPIPDSAFPNP-TSLSYLDLSNNQLVS-VPKSFRNLCRLRALYQDSNNLTDLLPNLFLKL 339
GPI + NP +L L L NN +P + N L +L+ N L+ +P+ L
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 340 SNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYD---------------NMLDVLY 384
S L L+L NML G +P ++ E + D L+ +
Sbjct: 442 SK-----LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496
Query: 385 LNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHN------- 437
L+NNR TG + K IG+L L +L +++NS G I A L + L +LDL+ N
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 438 --------SLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQ----NKFSELD---- 481
+ NF +G + N C ++ + N+ S +
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 482 VSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPP--EIDLSANSFEG 539
S T P + D + ++ +L++S+N +G +P ++ + P ++L N G
Sbjct: 616 TSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIP---KEIGSMPYLFILNLGHNDISG 670
Query: 540 PIPPIPLTVTSLILFKNMFSGSLSFLCQISD-EHFRYLDLSDNLLSGELPNCSKNWQKLT 598
IP ++ D LDLS N L G +P LT
Sbjct: 671 SIPD-----------------------EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 599 VLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
++L+NN SG IP+ F + L N G
Sbjct: 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 20/192 (10%)
Query: 629 NSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIG-DSLPDLVVLSLRSN--NFHGRVP 685
NS I S K LT LDL N +SG + S L L++ SN +F G+V
Sbjct: 86 NSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145
Query: 686 VQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVW 745
+ L ++VLDLS N+ISG N+ + + + + +
Sbjct: 146 GGL-KLNSLEVLDLSANSISGA------NVVGWVLSDGCGELKHLAISGNKIS------- 191
Query: 746 KRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTL 805
D + + L + +D+SSN IP + L L++S N L+G I T
Sbjct: 192 --GDVDVSRCVNL-EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE 248
Query: 806 LNSLDLSKNMLM 817
L L++S N +
Sbjct: 249 LKLLNISSNQFV 260
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 118/257 (45%), Gaps = 31/257 (12%)
Query: 562 LSFLCQISDEHFRY--LDLSDNLLSGE--LPNCSKNWQKLTVLNLAN-NKFSGKIPDSMD 616
L LC + +R LDLS L +P+ N L L + N G IP ++
Sbjct: 39 LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98
Query: 617 FNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR 676
+ L++ + + G +P + L LD +N +SG +P I SLP+LV ++
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFD 157
Query: 677 SNNFHGRVPVQVCHLQRI-QVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTD 735
N G +P ++ + +S+N ++G +P NL + S N +
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML-------- 209
Query: 736 YYNDHALLVWKRKDSE----YRNTL-------GLVKSI---DLSSNRLYGEIPE-VTSLV 780
D ++L K+++ +N+L GL K++ DL +NR+YG +P+ +T L
Sbjct: 210 -EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 781 GLISLNLSKNSLTGPIP 797
L SLN+S N+L G IP
Sbjct: 269 FLHSLNVSFNNLCGEIP 285
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 88/203 (43%), Gaps = 30/203 (14%)
Query: 535 NSFEGPIPPIPLTVTSL----ILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNC 590
N+ GPIPP +T L I N+ FL QI + LD S N LSG LP
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--KTLVTLDFSYNALSGTLPPS 144
Query: 591 SKNWQKLTVLNLANNKFSGKIPDSM-DFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLD 649
+ L + N+ SG IPDS F+ + S+ + N G++P + + L +D
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203
Query: 650 LGHNKISGIIPAWIG------------DSLP----------DLVVLSLRSNNFHGRVPVQ 687
L N + G G +SL +L L LR+N +G +P
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 688 VCHLQRIQVLDLSQNNISGTVPQ 710
+ L+ + L++S NN+ G +PQ
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 123/303 (40%), Gaps = 65/303 (21%)
Query: 394 LTKSIGQLSQLELLDVAS-NSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFE 452
+ S+ L L L + N+L G I A ++ L++L YL ++H ++ SG +P F
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNV-----SGAIPDFL 121
Query: 453 LNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHF 512
I K L T LD S +S T+P L PNL + N
Sbjct: 122 SQI-------------KTLVT------LDFSYNALSGTLPPSISSL-PNLVGITFDGNRI 161
Query: 513 TGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEH 572
+G +PD F+ + +S N G IPP F N+ +
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT---------FANL--------------N 198
Query: 573 FRYLDLSDNLLSGE---LPNCSKNWQKLTVLNLANNKFS---GKIPDSMDFNCMMLSLHL 626
++DLS N+L G+ L KN QK ++LA N + GK+ S + N L L
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQK---IHLAKNSLAFDLGKVGLSKNLN----GLDL 251
Query: 627 RNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPV 686
RNN G LP + L L++ N + G IP G +L V + +N P+
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGSPL 309
Query: 687 QVC 689
C
Sbjct: 310 PAC 312
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 41/188 (21%)
Query: 629 NSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV 688
N+ +G +P ++ TQL L + H +SG IP ++ + LV L N G +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSI 145
Query: 689 CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRK 748
L + + N ISG +P
Sbjct: 146 SSLPNLVGITFDGNRISGAIPD-------------------------------------- 167
Query: 749 DSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNS 808
Y + L S+ +S NRL G+IP + + L ++LS+N L G G
Sbjct: 168 --SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 809 LDLSKNML 816
+ L+KN L
Sbjct: 226 IHLAKNSL 233
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 33/172 (19%)
Query: 278 NKLQGPIPDS--AFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRL-RALYQDSNNLTDLLP 333
N L G +P S + PN +++ N++ ++P S+ + +L ++ N LT +P
Sbjct: 135 NALSGTLPPSISSLPNLVGITF---DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Query: 334 NLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLK---ELHLYDNML---------- 380
F L+ L + L+ NML G LF S K ++HL N L
Sbjct: 192 PTFANLN------LAFVDLSRNMLEGDAS--VLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 381 ---DVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRL 429
+ L L NNR GTL + + QL L L+V+ N+L G I + NL R
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRF 293
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 109/257 (42%), Gaps = 46/257 (17%)
Query: 355 NMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSL 414
N L G +P + L +LH LY+ + +G + + Q+ L LD + N+L
Sbjct: 87 NNLVGPIPPA--IAKLTQLH-------YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 415 KGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQ 474
G + + +S+L L + N + SG +P + +L
Sbjct: 138 SGTLPPS-ISSLPNLVGITFDGNRI-----SGAIPDSYGSFSKL---------------- 175
Query: 475 NKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTA--YPPEIDL 532
F+ + +S ++ +P F +L NL +++LS N G D S F + +I L
Sbjct: 176 --FTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEG---DASVLFGSDKNTQKIHL 228
Query: 533 SANSFEGPIPPIPLT--VTSLILFKNMFSGSL-SFLCQISDEHFRYLDLSDNLLSGELPN 589
+ NS + + L+ + L L N G+L L Q+ H L++S N L GE+P
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH--SLNVSFNNLCGEIPQ 286
Query: 590 CSKNWQKLTVLNLANNK 606
N Q+ V ANNK
Sbjct: 287 -GGNLQRFDVSAYANNK 302
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 91 TMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSL-KNIRHLDLSN 149
T++ L F SY L G + S+ L +L + N G IP GS K + +S
Sbjct: 126 TLVTLDF-SYNALSGTLPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISR 183
Query: 150 AGFTGRVPYQLGNLTSLQYLDLSFNF 175
TG++P NL +L ++DLS N
Sbjct: 184 NRLTGKIPPTFANL-NLAFVDLSRNM 208
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 86/191 (45%), Gaps = 29/191 (15%)
Query: 284 IPDSAFPNPTSLSYLDLSNN-QLVSV-PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSN 341
I +AF L LDLS+N QL SV P +F L RL L+ D L +L P LF L+
Sbjct: 70 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA- 128
Query: 342 CSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDNM--------------LDVLYL 385
L+ L L N L+ +LPD T +L L L+ N LD L L
Sbjct: 129 ----ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 183
Query: 386 NNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGS 445
+ NR + L +L L + +N+L + TEA L+ L L YL L+ N + + +
Sbjct: 184 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDNPWVCDCRA 242
Query: 446 ----GWVPSFE 452
W+ F
Sbjct: 243 RPLWAWLQKFR 253
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPNLF 336
N LQ +PD F + +L++L L N++ SVP ++FR L L L N + + P+ F
Sbjct: 138 NALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 196
Query: 337 LKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDN 378
L L L L +N L +LP L +L+ L L DN
Sbjct: 197 RDLGR-----LMTLYLFANNL-SALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 86/191 (45%), Gaps = 29/191 (15%)
Query: 284 IPDSAFPNPTSLSYLDLSNN-QLVSV-PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSN 341
I +AF L LDLS+N QL SV P +F L RL L+ D L +L P LF L+
Sbjct: 71 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA- 129
Query: 342 CSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDNM--------------LDVLYL 385
L+ L L N L+ +LPD T +L L L+ N LD L L
Sbjct: 130 ----ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184
Query: 386 NNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGS 445
+ NR + L +L L + +N+L + TEA L+ L L YL L+ N + + +
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDNPWVCDCRA 243
Query: 446 ----GWVPSFE 452
W+ F
Sbjct: 244 RPLWAWLQKFR 254
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 20/152 (13%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPNLF 336
N LQ +PD F + +L++L L N++ SVP ++FR L L L N + + P+ F
Sbjct: 139 NALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 337 LKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDN--MLDV----LYLNNN 388
L L L L +N L +LP L +L+ L L DN + D L+
Sbjct: 198 RDLGR-----LMTLYLFANNL-SALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251
Query: 389 RFTGTLTKSIGQLSQ----LELLDVASNSLKG 416
+F G+ ++ L Q +L +A+N L+G
Sbjct: 252 KFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 18/167 (10%)
Query: 246 AHLDLSLNDVSNSVYYWLFNXXXXXXXXXXXXNKLQGPIPDSAFPNPTSLSYLDLSNNQL 305
+LDL N + S+ +F+ NKLQ +P+ F TSL+YL+LS NQL
Sbjct: 31 TYLDLETNSL-KSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQL 88
Query: 306 VSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDI 364
S+P F L +L+ L ++N L L +F KL+ L+ L+L N L+ S+PD
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ-----LKDLRLYQNQLK-SVPDG 142
Query: 365 TL--FSSLKELHLYDNMLD-----VLYLNN--NRFTGTLTKSIGQLS 402
+SL+ + L+DN D + YL+ N+ +G + S G ++
Sbjct: 143 VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVA 189
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Query: 292 PTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
P +YLDL N L S+P F L L LY N L L +F KL+ +L L
Sbjct: 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-----SLTYL 81
Query: 351 QLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVA 410
L++N L+ SLP+ +F L +L L LN N+ +L+QL+ L +
Sbjct: 82 NLSTNQLQ-SLPN-GVFDKLTQLK-------ELALNTNQLQSLPDGVFDKLTQLKDLRLY 132
Query: 411 SNSLKGMITEAHLSNLSRLTYLDLSHN 437
N LK + + L+ L Y+ L N
Sbjct: 133 QNQLKS-VPDGVFDRLTSLQYIWLHDN 158
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 17/135 (12%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLF 336
N+LQ +PD F T+L+YL+L++NQL S+PK F L L L N L L +F
Sbjct: 119 NQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 337 LKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDNMLD-----VLYLNN-- 387
KL+ L+ L+L N L+ S+PD +SL+ + L+DN D + YL+
Sbjct: 178 DKLTQ-----LKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 231
Query: 388 NRFTGTLTKSIGQLS 402
N+ +G + S G ++
Sbjct: 232 NKHSGVVRNSAGSVA 246
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLF 336
N+LQ +P+ F T+L L L NQL S+P F L L L N L L +F
Sbjct: 95 NQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153
Query: 337 LKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDNML 380
KL+N + L L+ N L+ SLP+ + LK+L LY N L
Sbjct: 154 DKLTNLTE-----LDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 16/152 (10%)
Query: 287 SAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRD 345
SA T+L+YL L+ NQL S+P F L L+ L N L L +F KL+N
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN---- 134
Query: 346 TLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLE 405
L L L N L+ SLP +F L L D L+ N+ +L+QL+
Sbjct: 135 -LTYLNLAHNQLQ-SLPK-GVFDKLTNLTELD-------LSYNQLQSLPEGVFDKLTQLK 184
Query: 406 LLDVASNSLKGMITEAHLSNLSRLTYLDLSHN 437
L + N LK + + L+ L Y+ L N
Sbjct: 185 DLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 490 TVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFE 538
++P+ +D NL YLNL+HN + + K T E+DLS N +
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL-TELDLSYNQLQ 170
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 15/116 (12%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLF 336
N+LQ +PD F T+L+YL L +NQL S+PK F L L L D+N L L +F
Sbjct: 119 NQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF 177
Query: 337 LKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDN-----MLDVLYL 385
KL+ L+ L LN N L+ S+PD +SL + L +N D+LYL
Sbjct: 178 DKLTQ-----LKQLSLNDNQLK-SVPDGVFDRLTSLTHIWLLNNPWDCACSDILYL 227
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLF 336
N+LQ +P+ F T+L L L NQL S+P F L L LY N L L +F
Sbjct: 95 NQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVF 153
Query: 337 LKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDNML 380
KL+N +R L L++N L+ SLP+ + LK+L L DN L
Sbjct: 154 DKLTNLTR-----LDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQL 193
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 287 SAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRD 345
SA T+L+YL L+ NQL S+P F L L+ L N L L +F KL+N
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN---- 134
Query: 346 TLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLE 405
L L L N L+ SLP +F L L D L+NN+ +L+QL+
Sbjct: 135 -LTYLYLYHNQLQ-SLPK-GVFDKLTNLTRLD-------LDNNQLQSLPEGVFDKLTQLK 184
Query: 406 LLDVASNSLKGMITEAHLSNLSRLTYLDLSHN 437
L + N LK + + L+ LT++ L +N
Sbjct: 185 QLSLNDNQLKS-VPDGVFDRLTSLTHIWLLNN 215
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 83/176 (47%), Gaps = 34/176 (19%)
Query: 287 SAFPN--PTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCS 343
+A P+ P LDL +N+L S+P K+F L +LR LY + N L L +F +L N
Sbjct: 29 TAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN-- 86
Query: 344 RDTLEILQLNSNMLRGSLPDITLFS---SLKELHLYDNMLDVLYLNNNRFTGTLTK---- 396
LE L + N L+ +LP I +F +L EL L N L L R +LTK
Sbjct: 87 ---LETLWVTDNKLQ-ALP-IGVFDQLVNLAELRLDRNQLKSLP---PRVFDSLTKLTYL 138
Query: 397 SIG-------------QLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
S+G +L+ L+ L + +N LK + E L+ L L L +N L
Sbjct: 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQL 193
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 65/161 (40%), Gaps = 41/161 (25%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNLTDLLPNLF 336
NKLQ +P F +L+ L L NQL S+ P+ F +L +L L N L L +F
Sbjct: 95 NKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153
Query: 337 LKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTK 396
KL +SLKEL LY NN+
Sbjct: 154 DKL----------------------------TSLKELRLY----------NNQLKRVPEG 175
Query: 397 SIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHN 437
+ +L++L+ L + +N LK + E +L +L L L N
Sbjct: 176 AFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 56/140 (40%), Gaps = 4/140 (2%)
Query: 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSF 631
R L L+DN L K + L L + +NK D + L L N
Sbjct: 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Query: 632 IGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVC-H 690
P S T+LT L LG+N++ +P + D L L L L +N RVP
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDK 179
Query: 691 LQRIQVLDLSQNNISGTVPQ 710
L ++ L L N + VP+
Sbjct: 180 LTELKTLKLDNNQLK-RVPE 198
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 390 FTGTLTKS---IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSG 446
F G +T S +G L QLE LD ++LK M + +L L YLD+SH + F
Sbjct: 382 FNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 447 WVPSFELNIIRL-GACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYL 505
+ L ++++ G Q P + LD+S ++ P F LS +L L
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVL 499
Query: 506 NLSHNHF 512
N+SHN+F
Sbjct: 500 NMSHNNF 506
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 113 GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLS 172
GL L L M N F +P L+N+ LDLS P +L+SLQ L++S
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
Query: 173 FN--FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPS 216
N F + + + L+ L L+Y LN + T Q + PS
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVLDY-SLNHI----MTSKKQELQHFPS 543
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 108/304 (35%), Gaps = 71/304 (23%)
Query: 112 IGLQHLNYLNMKYNDF-----------------GGKQIPAFIGSLKNIRHLDLSNAG--F 152
G QHL +N K+ F GG L ++ LDLS G F
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSF 361
Query: 153 TGRVPYQLGNLTSLQYLDLSFN-FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVV 211
G TSL+YLDLSFN +S L QL L++ N + E + +
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF---- 417
Query: 212 SQLPSLTELQLRGCNLPXXXXXXXXXXXXXXXXLAHLDLSLNDVSNSVYYWLFNXXXXXX 271
L LR L +LD+S + + + +FN
Sbjct: 418 --------LSLRN--------------------LIYLDIS-HTHTRVAFNGIFNGLSSLE 448
Query: 272 XXXXXXNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNLTD 330
N Q F +L++LDLS QL + P +F +L L+ L NN
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508
Query: 331 LLPNLFLKLSNCSRDTLEILQLNS-NMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNR 389
L DT LNS +L SL I + S +EL + + L L L N
Sbjct: 509 L-------------DTFPYKCLNSLQVLDYSLNHI-MTSKKQELQHFPSSLAFLNLTQND 554
Query: 390 FTGT 393
F T
Sbjct: 555 FACT 558
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 28/199 (14%)
Query: 293 TSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLP-NLFLKLSNCSRDTLEILQ 351
TSL YLDLS N ++++ +F L +L L +NL + ++FL L N L L
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-----LIYLD 427
Query: 352 LNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSI-GQLSQLELLDVA 410
++ R + I F+ L L+VL + N F I +L L LD++
Sbjct: 428 ISHTHTRVAFNGI--FNGLSS-------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 411 SNSLKGMITEAHLSNLSRLTYLDLSHNSLI-------LNFGSGWVPSFELNIIRLGACKQ 463
L+ + A ++LS L L++SHN+ S V + LN I ++
Sbjct: 479 QCQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Query: 464 GPQFPKWLQ----TQNKFS 478
FP L TQN F+
Sbjct: 538 LQHFPSSLAFLNLTQNDFA 556
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 398 IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
IG L L+ L+VA N ++ + SNL+ L +LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 390 FTGTLTKS---IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSG 446
F G +T S +G L QLE LD ++LK M + +L L YLD+SH + F
Sbjct: 87 FNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 447 WVPSFELNIIRL-GACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYL 505
+ L ++++ G Q P + LD+S ++ P F LS +L L
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVL 204
Query: 506 NLSHNHF 512
N+SHN+F
Sbjct: 205 NMSHNNF 211
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 113 GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLS 172
GL L L M N F +P L+N+ LDLS P +L+SLQ L++S
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 173 FN--FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPS 216
N F + + + L+ L L+Y LN + T Q + PS
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDY-SLNHI----MTSKKQELQHFPS 248
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 96/260 (36%), Gaps = 52/260 (20%)
Query: 139 LKNIRHLDLSNAG--FTGRVPYQLGNLTSLQYLDLSFN-FDMLSKKLEWLSQLSFLEYVR 195
L + L LS+ G F G TSL+YLDLSFN +S L QL L++
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 110
Query: 196 LNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPXXXXXXXXXXXXXXXXLAHLDLSLNDV 255
N + E + + L LR L +LD+S +
Sbjct: 111 SNLKQMSEFSVF------------LSLRN--------------------LIYLDIS-HTH 137
Query: 256 SNSVYYWLFNXXXXXXXXXXXXNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRN 314
+ + +FN N Q F +L++LDLS QL + P +F +
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197
Query: 315 LCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNS-NMLRGSLPDITLFSSLKEL 373
L L+ L NN L DT LNS +L SL I + S +EL
Sbjct: 198 LSSLQVLNMSHNNFFSL-------------DTFPYKCLNSLQVLDYSLNHI-MTSKKQEL 243
Query: 374 HLYDNMLDVLYLNNNRFTGT 393
+ + L L L N F T
Sbjct: 244 QHFPSSLAFLNLTQNDFACT 263
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 390 FTGTLTKS---IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSG 446
F G +T S +G L QLE LD ++LK M + +L L YLD+SH + F
Sbjct: 406 FNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 464
Query: 447 WVPSFELNIIRL-GACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYL 505
+ L ++++ G Q P + LD+S ++ P F LS +L L
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVL 523
Query: 506 NLSHNHF 512
N+SHN+F
Sbjct: 524 NMSHNNF 530
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 113 GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLS 172
GL L L M N F +P L+N+ LDLS P +L+SLQ L++S
Sbjct: 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526
Query: 173 FN--FDMLSKKLEWLSQLSFLEY 193
N F + + + L+ L L+Y
Sbjct: 527 HNNFFSLDTFPYKCLNSLQVLDY 549
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 107/304 (35%), Gaps = 71/304 (23%)
Query: 112 IGLQHLNYLNMKYNDF-----------------GGKQIPAFIGSLKNIRHLDLSNAG--F 152
G QHL +N K+ F GG L ++ LDLS G F
Sbjct: 328 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSF 385
Query: 153 TGRVPYQLGNLTSLQYLDLSFN-FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVV 211
G SL+YLDLSFN +S L QL L++ N + E + +
Sbjct: 386 KGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF---- 441
Query: 212 SQLPSLTELQLRGCNLPXXXXXXXXXXXXXXXXLAHLDLSLNDVSNSVYYWLFNXXXXXX 271
L LR L +LD+S + + + +FN
Sbjct: 442 --------LSLRN--------------------LIYLDIS-HTHTRVAFNGIFNGLSSLE 472
Query: 272 XXXXXXNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNLTD 330
N Q F +L++LDLS QL + P +F +L L+ L NN
Sbjct: 473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532
Query: 331 LLPNLFLKLSNCSRDTLEILQLNS-NMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNR 389
L DT LNS +L SL I + S +EL + + L L L N
Sbjct: 533 L-------------DTFPYKCLNSLQVLDYSLNHI-MTSKKQELQHFPSSLAFLNLTQND 578
Query: 390 FTGT 393
F T
Sbjct: 579 FACT 582
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 85/198 (42%), Gaps = 28/198 (14%)
Query: 294 SLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLP-NLFLKLSNCSRDTLEILQL 352
SL YLDLS N ++++ +F L +L L +NL + ++FL L N L L +
Sbjct: 398 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-----LIYLDI 452
Query: 353 NSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSI-GQLSQLELLDVAS 411
+ R + I F+ L L+VL + N F I +L L LD++
Sbjct: 453 SHTHTRVAFNGI--FNGLSS-------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 412 NSLKGMITEAHLSNLSRLTYLDLSHNSLI-------LNFGSGWVPSFELNIIRLGACKQG 464
L+ + A ++LS L L++SHN+ S V + LN I ++
Sbjct: 504 CQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
Query: 465 PQFPKWLQ----TQNKFS 478
FP L TQN F+
Sbjct: 563 QHFPSSLAFLNLTQNDFA 580
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 398 IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
IG L L+ L+VA N ++ + SNL+ L +LDLS N +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLF 336
NKLQ +P F T L+ L LS NQ+ S+P F L +L LY N L L +F
Sbjct: 38 NKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVF 96
Query: 337 LKLSNCSRDTLEILQLNSNMLRGSLPD--ITLFSSLKELHLYDNMLDV 382
KL+ L+ L L++N L+ S+PD +SL+++ L+ N D
Sbjct: 97 DKLTQ-----LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 138
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 292 PTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
P+S + L+L +N+L S+P F L +L L N + L +F KL+ L IL
Sbjct: 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK-----LTIL 81
Query: 351 QLNSNMLRGSLPDITL--FSSLKELHLYDNML 380
L+ N L+ SLP+ + LKEL L N L
Sbjct: 82 YLHENKLQ-SLPNGVFDKLTQLKELALDTNQL 112
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 282 GPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLS 340
G +P F + T L+ LDL NQL +P + F L L+ L+ N LT+ LP +L+
Sbjct: 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLT 135
Query: 341 NCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDN-----MLDVLYLNN 387
+ L L L+ N L+ S+P SSL +L+ N D++YL N
Sbjct: 136 H-----LTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRN 183
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 599 VLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISG 657
+L L +N+ + P D + L+L +N +G LP V S TQLTVLDLG N+++
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLT- 101
Query: 658 IIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTA 717
++P+ + D L L L + N +P + L + L L QN + + L++
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 718 MT 719
+T
Sbjct: 161 LT 162
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 26/167 (15%)
Query: 293 TSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLT--DLLPNLFLKLSNCSRDTLEIL 350
T+L+YL +N+L ++ L +L L D+N LT D+ N L NC+R+TL +
Sbjct: 85 TNLTYLACDSNKLTNL--DVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI 142
Query: 351 QLNSNMLRGSLP----------DITLFSSLKELHLYDNMLDVLYLNNNRF-------TGT 393
++ N L D+T + L L N + L ++ N+ T
Sbjct: 143 DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNN 202
Query: 394 LTK-SIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
+TK + Q QL LD +SN L TE ++ L++LTY D S N L
Sbjct: 203 ITKLDLNQNIQLTFLDCSSNKL----TEIDVTPLTQLTYFDCSVNPL 245
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 50/227 (22%)
Query: 293 TSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLT--DLLPNLFLKLSNCSRDTL--- 347
T L+ LD S N++ + S L L L D+NN+T DL N+ L +CS + L
Sbjct: 170 TQLTTLDCSFNKITELDVSQNKL--LNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI 227
Query: 348 ------EILQLNSNMLRGSLPDITLFSSLKELH-LYDNMLDVLYLNNNR---FTGTLTKS 397
++ + ++ + D++ S L LH + ++L++ +N + F +
Sbjct: 228 DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK 287
Query: 398 IGQL-----SQLELLDVASNSLKGMITEAHLS----------NLSRLTYLDLSHNSL--- 439
I +L +QL LLD + ITE LS N + LT LD+SHN+
Sbjct: 288 IKELDVTHNTQLYLLDCQA----AGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKS 343
Query: 440 -------ILNFGS-GWVPSFELNIIRLGACKQGPQFPKWLQTQNKFS 478
I +F S G +P+ N G Q PK T N +
Sbjct: 344 LSCVNAHIQDFSSVGKIPALNNNFEAEG---QTITMPKETLTNNSLT 387
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 103/278 (37%), Gaps = 61/278 (21%)
Query: 112 IGLQHLNYLNMKYNDF-----------------GGKQIPAFIGSLKNIRHLDLSNAG--F 152
G QHL +N K+ F GG L ++ LDLS G F
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSF 361
Query: 153 TGRVPYQLGNLTSLQYLDLSFN-FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVV 211
G TSL+YLDLSFN +S L QL L++ N + E + +L +
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421
Query: 212 SQLPSLTELQLRGCNLPXXXXXXXXXXXXXXXXLAHLDLSLNDVSNSVYYWLFNXXXXXX 271
+ L +LD+S + + + +FN
Sbjct: 422 N--------------------------------LIYLDIS-HTHTRVAFNGIFNGLSSLE 448
Query: 272 XXXXXXNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNLTD 330
N Q F +L++LDLS QL + P +F +L L+ L SN L
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508
Query: 331 LLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFS 368
+ +F +L+ +L+ + L++N S P I S
Sbjct: 509 VPDGIFDRLT-----SLQKIWLHTNPWDCSCPRIDYLS 541
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 7/159 (4%)
Query: 390 FTGTLTKS---IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSG 446
F G +T S +G L QLE LD ++LK M + +L L YLD+SH + F
Sbjct: 382 FNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 447 WVPSFELNIIRL-GACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYL 505
+ L ++++ G Q P + LD+S ++ P F LS +L L
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVL 499
Query: 506 NLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPI 544
N++ N + + + T+ +I L N ++ P I
Sbjct: 500 NMASNQLKSVPDGIFDRLTSL-QKIWLHTNPWDCSCPRI 537
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 30/146 (20%)
Query: 293 TSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLP-NLFLKLSNC--------- 342
TSL YLDLS N ++++ +F L +L L +NL + ++FL L N
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 343 ----------SRDTLEILQLNSNMLRGS-LPDITLFSSLKELHLYDNMLDVLYLNNNRFT 391
+LE+L++ N + + LPDI F+ L+ L D L+ +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFLD-------LSQCQLE 483
Query: 392 GTLTKSIGQLSQLELLDVASNSLKGM 417
+ LS L++L++ASN LK +
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSV 509
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 7/163 (4%)
Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLR-NNSFI 632
+LDLS N LS + CS++ T L + F+G I S +F + HL +S +
Sbjct: 350 EFLDLSRNGLSFK-GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 633 GELP--SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGR-VPVQVC 689
++ S S L LD+ H + + I + L L VL + N+F +P
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467
Query: 690 HLQRIQVLDLSQNNISGTVPQCLNNLTAMTA-NKSSNAMIRYP 731
L+ + LDLSQ + P N+L+++ N +SN + P
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 398 IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
IG L L+ L+VA N ++ + SNL+ L +LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 110/259 (42%), Gaps = 41/259 (15%)
Query: 284 IPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCS 343
I + F + L LDL+ L +P L L+ L +N +L ++S +
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-----QISASN 323
Query: 344 RDTLEILQLNSNMLRGSLPDITL--FSSLKELHL-YDNM---------------LDVLYL 385
+L L + N R L L +L+EL L +D++ L L L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383
Query: 386 NNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGS 445
+ N T++ + QLELLD+A LK ++ NL L L+LSH+ L ++
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443
Query: 446 GW--VPSFE-LNIIRLGACKQGPQFPKW-------LQTQNKFSELDVSAAEISDTVPNWF 495
+ +P+ + LN+ QG FPK LQT + L +S ++S + F
Sbjct: 444 LFDGLPALQHLNL-------QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496
Query: 496 WDLSPNLYYLNLSHNHFTG 514
L + +++LSHN T
Sbjct: 497 TSLKM-MNHVDLSHNRLTS 514
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 86/375 (22%), Positives = 150/375 (40%), Gaps = 74/375 (19%)
Query: 470 WLQTQNKFSELDVSAA----------EISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDL 519
WL T + D+S A E + ++F+++S N ++ F+G+
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC------FSGL---- 280
Query: 520 SQKFTAYPPEIDLSANSF-EGPIPPIPL-TVTSLILFKNMFSGSLSFLCQISDEHF---R 574
E+DL+A E P + L T+ L+L N F LCQIS +F
Sbjct: 281 --------QELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN----LCQISASNFPSLT 328
Query: 575 YLDLSDNLLSGEL-PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCM--MLSLHLRNNSF 631
+L + N EL C +N + L L+L+++ ++ + + SL+L N
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388
Query: 632 IGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHL 691
+ + K QL +LDL ++ + D+ + P Q HL
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLK------VKDA----------------QSPFQNLHL 426
Query: 692 QRIQVLDLSQNNISGTVPQCLNNLTAMT-----ANKSSNAMIRYPLRTDYYNDHALLVWK 746
++VL+LS + + + Q + L A+ N I+ +LV
Sbjct: 427 --LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484
Query: 747 -----RKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIG 801
D +L ++ +DLS NRL E S + I LNL+ N ++ +PS +
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLP 544
Query: 802 GLTLLNSLDLSKNML 816
L+ +++L +N L
Sbjct: 545 ILSQQRTINLRQNPL 559
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 57/251 (22%)
Query: 117 LNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGR--VPYQLGNLTSLQYLDLSFN 174
L +L++K N + + +L+N+R LDLS+ QL NL+ LQ L+LS+N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Query: 175 FDMLSKKLEWLSQLSFLEYVRL--NQVNLGEATDWL---------------------QVV 211
+ LS K E + LE + L ++ + +A Q+
Sbjct: 387 -EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445
Query: 212 SQLPSLTELQLRGCNLPXXXXXXXXXXXXXXXXLAHLDLSLNDVSNSVYYWLFNXXXXXX 271
LP+L L L+G + P L L LS D+S+
Sbjct: 446 DGLPALQHLNLQGNHFP-KGNIQKTNSLQTLGRLEILVLSFCDLSS-------------- 490
Query: 272 XXXXXXNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQD--SNNLT 329
I AF + ++++DLS+N+L S S L L+ +Y + SN+++
Sbjct: 491 ------------IDQHAFTSLKMMNHVDLSHNRLTS--SSIEALSHLKGIYLNLASNHIS 536
Query: 330 DLLPNLFLKLS 340
+LP+L LS
Sbjct: 537 IILPSLLPILS 547
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 80/191 (41%), Gaps = 24/191 (12%)
Query: 347 LEILQLNSNMLRG-SLPDITLFSSLKELHLYDNMLDV--------------LYLNNNRFT 391
LEILQL+ N++R + SL L L+DN L L+L NN
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 392 GTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL--ILNFGS-GWV 448
+ + ++ L LD+ I+EA L L YL+L +L I N + +
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRL 180
Query: 449 PSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLS 508
EL+ RL + G Q +L + A+++ N F DL +L LNLS
Sbjct: 181 EELELSGNRLDLIRPGS-----FQGLTSLRKLWLMHAQVATIERNAFDDLK-SLEELNLS 234
Query: 509 HNHFTGMLPDL 519
HN+ + DL
Sbjct: 235 HNNLMSLPHDL 245
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 35/199 (17%)
Query: 284 IPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNC 342
I AF SL+ L+L +N+L +VP ++F L +LR L+ +N + + F ++ +
Sbjct: 74 IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 343 SRDTLEILQ------------------LNSNMLR-GSLPDITLFSSLKELHLYDNMLDV- 382
R L L+ LN M +P++T L+EL L N LD+
Sbjct: 134 RRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLI 193
Query: 383 -------------LYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRL 429
L+L + + + L LE L+++ N+L + + + L RL
Sbjct: 194 RPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL-FTPLHRL 252
Query: 430 TYLDLSHNSLILNFGSGWV 448
+ L+HN N W+
Sbjct: 253 ERVHLNHNPWHCNCDVLWL 271
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 85/220 (38%), Gaps = 46/220 (20%)
Query: 113 GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLS 172
GL LN L + N AF L +R L L N Y + SL+ LDL
Sbjct: 81 GLPSLNTLELFDNRLTTVPTQAF-EYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG 139
Query: 173 FNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEAT-DWLQVVSQLPSLTELQLRGCNLPXXX 231
K+LE++S+ +F V L +NLG + ++ L L EL+L G
Sbjct: 140 E-----LKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSG------- 187
Query: 232 XXXXXXXXXXXXXLAHLDL----SLNDVSNSVYYWLFNXXXXXXXXXXXXNKLQGPIPDS 287
LDL S +++ WL + I +
Sbjct: 188 --------------NRLDLIRPGSFQGLTSLRKLWLMHAQV-------------ATIERN 220
Query: 288 AFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSN 326
AF + SL L+LS+N L+S+P F L RL ++ + N
Sbjct: 221 AFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPNLF 336
N+LQ + F + T L L L+NNQL S+P F +L +L LY N L L +F
Sbjct: 69 NQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF 127
Query: 337 LKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDNML 380
+L+ L+ L+LN+N L+ S+P ++L+ L L N L
Sbjct: 128 DRLTK-----LKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 70/183 (38%), Gaps = 16/183 (8%)
Query: 529 EIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFR------YLDLSDNL 582
E+D S + IP L L + L +SD FR +L+L N
Sbjct: 18 EVDCQGKSLDSVPSGIPADTEKLDL-------QSTGLATLSDATFRGLTKLTWLNLDYNQ 70
Query: 583 LSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSV-KS 641
L + +L L LANN+ + D + L+L N + LPS V
Sbjct: 71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDR 129
Query: 642 FTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQ 701
T+L L L N++ I PA D L +L LSL +N L ++Q + L
Sbjct: 130 LTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
Query: 702 NNI 704
N
Sbjct: 189 NQF 191
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRAL 321
N+LQ IP AF T+L L LS NQL SVP +F L +L+ +
Sbjct: 141 NQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 80/191 (41%), Gaps = 24/191 (12%)
Query: 347 LEILQLNSNMLRG-SLPDITLFSSLKELHLYDNMLDV--------------LYLNNNRFT 391
LEILQL+ N++R + SL L L+DN L L+L NN
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 392 GTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL--ILNFGS-GWV 448
+ + ++ L LD+ I+EA L L YL+L +L I N + +
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRL 180
Query: 449 PSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLS 508
EL+ RL + G Q +L + A+++ N F DL +L LNLS
Sbjct: 181 EELELSGNRLDLIRPGS-----FQGLTSLRKLWLMHAQVATIERNAFDDLK-SLEELNLS 234
Query: 509 HNHFTGMLPDL 519
HN+ + DL
Sbjct: 235 HNNLMSLPHDL 245
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 35/199 (17%)
Query: 284 IPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNC 342
I AF SL+ L+L +N+L +VP ++F L +LR L+ +N + + F ++ +
Sbjct: 74 IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 343 SRDTLEILQ------------------LNSNMLR-GSLPDITLFSSLKELHLYDNMLDV- 382
R L L+ LN M +P++T L+EL L N LD+
Sbjct: 134 RRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLI 193
Query: 383 -------------LYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRL 429
L+L + + + L LE L+++ N+L + + + L RL
Sbjct: 194 RPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL-FTPLHRL 252
Query: 430 TYLDLSHNSLILNFGSGWV 448
+ L+HN N W+
Sbjct: 253 ERVHLNHNPWHCNCDVLWL 271
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 85/220 (38%), Gaps = 46/220 (20%)
Query: 113 GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLS 172
GL LN L + N AF L +R L L N Y + SL+ LDL
Sbjct: 81 GLPSLNTLELFDNRLTTVPTQAF-EYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG 139
Query: 173 FNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEAT-DWLQVVSQLPSLTELQLRGCNLPXXX 231
K+LE++S+ +F V L +NLG + ++ L L EL+L G
Sbjct: 140 E-----LKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSG------- 187
Query: 232 XXXXXXXXXXXXXLAHLDL----SLNDVSNSVYYWLFNXXXXXXXXXXXXNKLQGPIPDS 287
LDL S +++ WL + I +
Sbjct: 188 --------------NRLDLIRPGSFQGLTSLRKLWLMHAQV-------------ATIERN 220
Query: 288 AFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSN 326
AF + SL L+LS+N L+S+P F L RL ++ + N
Sbjct: 221 AFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPNLF 336
N+LQ + F + T L L L+NNQL S+P F +L +L LY N L L +F
Sbjct: 69 NQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF 127
Query: 337 LKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDNML 380
+L+ L+ L+LN+N L+ S+P ++L+ L L N L
Sbjct: 128 DRLTK-----LKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 70/183 (38%), Gaps = 16/183 (8%)
Query: 529 EIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFR------YLDLSDNL 582
E+D S + IP L L + L +SD FR +L+L N
Sbjct: 18 EVDCQGKSLDSVPSGIPADTEKLDL-------QSTGLATLSDATFRGLTKLTWLNLDYNQ 70
Query: 583 LSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSV-KS 641
L + +L L LANN+ + D + L+L N + LPS V
Sbjct: 71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDR 129
Query: 642 FTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQ 701
T+L L L N++ I PA D L +L LSL +N L ++Q + L
Sbjct: 130 LTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
Query: 702 NNI 704
N
Sbjct: 189 NQF 191
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 22/88 (25%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDLLPNLF 336
N+LQ IP AF T+L L LS NQL SVP +F L +L+ + LF
Sbjct: 141 NQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI------------TLF 187
Query: 337 LKLSNCSRDTLEILQL------NSNMLR 358
+CSR EIL L NSN ++
Sbjct: 188 GNQFDCSR--CEILYLSQWIRENSNKVK 213
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 117/468 (25%), Positives = 189/468 (40%), Gaps = 90/468 (19%)
Query: 293 TSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNL-TDLLPNLFLKLSNCSRDTLEIL 350
+SL L+LS+NQ+ P F + RL L+ ++ L L L L+L+N S + L
Sbjct: 181 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS---IRNL 237
Query: 351 QLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVA 410
L+++ L S T F LK +L MLD+ Y NN G S L QLE +
Sbjct: 238 SLSNSQL--STTSNTTFLGLKWTNL--TMLDLSY-NNLNVVGN--DSFAWLPQLEYFFLE 290
Query: 411 SNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFP-K 469
N+++ + + + L L + YL+L SF I L + + F +
Sbjct: 291 YNNIQHLFSHS-LHGLFNVRYLNLKR-------------SFTKQSISLASLPKIDDFSFQ 336
Query: 470 WLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPE 529
WL+ L++ +I N F L NL YL+LS N FT + ++ F +
Sbjct: 337 WLKC---LEHLNMEDNDIPGIKSNMFTGLI-NLKYLSLS-NSFTSLRTLTNETFVSLA-- 389
Query: 530 IDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPN 589
P+ + LT + + S + S+L H LDL N + EL
Sbjct: 390 --------HSPLHILNLTKNKI---SKIESDAFSWLG-----HLEVLDLGLNEIGQEL-- 431
Query: 590 CSKNWQKLT---VLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSF--IGELPSSVKSFTQ 644
+ W+ L + L+ NK+ +S + L LR + + PS +
Sbjct: 432 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 491
Query: 645 LTVLDLG------------------------HNKISGII-------PAWIGDSLPDLVVL 673
LT+LDL HN ++ + P + L L +L
Sbjct: 492 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 551
Query: 674 SLRSNNFHGRVPVQVCH-LQRIQVLDLSQNNISGTVPQCLNNLTAMTA 720
+L SN F +PV+V L ++++DL NN++ NN ++ +
Sbjct: 552 NLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 598
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 115/417 (27%), Positives = 178/417 (42%), Gaps = 63/417 (15%)
Query: 284 IPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNC 342
+PD PT+++ L+L++NQL +P + F +L +L N ++ L P L KL
Sbjct: 29 VPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP-- 83
Query: 343 SRDTLEILQLNSNMLRGSLPDITLF--SSLKELHLYDNMLDVLYLNNNRFTG-----TLT 395
L++L L N L L D T ++L ELHL N + + NN F TL
Sbjct: 84 ---MLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSN--SIQKIKNNPFVKQKNLITLD 137
Query: 396 KSIGQLSQLEL-----------LDVASNSLKGMITEA-HLSNLSRLTYLDLSHNSLILNF 443
S LS +L L +++N ++ + +E + S L L+LS N I F
Sbjct: 138 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEF 196
Query: 444 GSGWVPSF-ELNIIRLGACKQGPQFPKWLQTQ---NKFSELDVSAAEISDTVPNWFWDLS 499
G + L + L + GP + L + L +S +++S T F L
Sbjct: 197 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 256
Query: 500 -PNLYYLNLSHNHFT-------GMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSL 551
NL L+LS+N+ LP L F Y L ++S G L
Sbjct: 257 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG------LFNVRY 310
Query: 552 ILFKNMF---SGSLSFLCQISDEHFR------YLDLSDNLLSGELPNCSKNWQKLTVLNL 602
+ K F S SL+ L +I D F+ +L++ DN + G N L L+L
Sbjct: 311 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 370
Query: 603 ANNKFSGKIPDSMDFNCMMLS-LHLRN--NSFIGELPSSVKSFT-QLTVLDLGHNKI 655
+N+ S + + F + S LH+ N + I ++ S S+ L VLDLG N+I
Sbjct: 371 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 427
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 610 KIPDSMDFNCMMLSLHLRNNSFIGELPSS-VKSFTQLTVLDLGHNKISGIIPAWIGDSLP 668
++PD + N +L+L ++ + LP++ ++QLT LD+G N IS + P + LP
Sbjct: 28 QVPDDLPTNITVLNL---THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLP 83
Query: 669 DLVVLSLRSN 678
L VL+L+ N
Sbjct: 84 MLKVLNLQHN 93
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%)
Query: 576 LDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGEL 635
LD+ N +S P + L VLNL +N+ S + F + LHL +NS
Sbjct: 64 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 123
Query: 636 PSSVKSFTQLTVLDLGHNKISG 657
+ L LDL HN +S
Sbjct: 124 NNPFVKQKNLITLDLSHNGLSS 145
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 117/468 (25%), Positives = 189/468 (40%), Gaps = 90/468 (19%)
Query: 293 TSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNL-TDLLPNLFLKLSNCSRDTLEIL 350
+SL L+LS+NQ+ P F + RL L+ ++ L L L L+L+N S + L
Sbjct: 176 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS---IRNL 232
Query: 351 QLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVA 410
L+++ L S T F LK +L MLD+ Y NN G S L QLE +
Sbjct: 233 SLSNSQL--STTSNTTFLGLKWTNL--TMLDLSY-NNLNVVGN--DSFAWLPQLEYFFLE 285
Query: 411 SNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFP-K 469
N+++ + + + L L + YL+L SF I L + + F +
Sbjct: 286 YNNIQHLFSHS-LHGLFNVRYLNLKR-------------SFTKQSISLASLPKIDDFSFQ 331
Query: 470 WLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPE 529
WL+ L++ +I N F L NL YL+LS N FT + ++ F +
Sbjct: 332 WLKC---LEHLNMEDNDIPGIKSNMFTGLI-NLKYLSLS-NSFTSLRTLTNETFVSLA-- 384
Query: 530 IDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPN 589
P+ + LT + + S + S+L H LDL N + EL
Sbjct: 385 --------HSPLHILNLTKNKI---SKIESDAFSWLG-----HLEVLDLGLNEIGQEL-- 426
Query: 590 CSKNWQKLT---VLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSF--IGELPSSVKSFTQ 644
+ W+ L + L+ NK+ +S + L LR + + PS +
Sbjct: 427 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 486
Query: 645 LTVLDLG------------------------HNKISGII-------PAWIGDSLPDLVVL 673
LT+LDL HN ++ + P + L L +L
Sbjct: 487 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 546
Query: 674 SLRSNNFHGRVPVQVCH-LQRIQVLDLSQNNISGTVPQCLNNLTAMTA 720
+L SN F +PV+V L ++++DL NN++ NN ++ +
Sbjct: 547 NLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 593
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 115/417 (27%), Positives = 178/417 (42%), Gaps = 63/417 (15%)
Query: 284 IPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNC 342
+PD PT+++ L+L++NQL +P + F +L +L N ++ L P L KL
Sbjct: 24 VPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP-- 78
Query: 343 SRDTLEILQLNSNMLRGSLPDITLF--SSLKELHLYDNMLDVLYLNNNRFTG-----TLT 395
L++L L N L L D T ++L ELHL N + + NN F TL
Sbjct: 79 ---MLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSN--SIQKIKNNPFVKQKNLITLD 132
Query: 396 KSIGQLSQLEL-----------LDVASNSLKGMITEA-HLSNLSRLTYLDLSHNSLILNF 443
S LS +L L +++N ++ + +E + S L L+LS N I F
Sbjct: 133 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEF 191
Query: 444 GSGWVPSF-ELNIIRLGACKQGPQFPKWLQTQ---NKFSELDVSAAEISDTVPNWFWDLS 499
G + L + L + GP + L + L +S +++S T F L
Sbjct: 192 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 251
Query: 500 -PNLYYLNLSHNHFT-------GMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSL 551
NL L+LS+N+ LP L F Y L ++S G L
Sbjct: 252 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG------LFNVRY 305
Query: 552 ILFKNMF---SGSLSFLCQISDEHFR------YLDLSDNLLSGELPNCSKNWQKLTVLNL 602
+ K F S SL+ L +I D F+ +L++ DN + G N L L+L
Sbjct: 306 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 365
Query: 603 ANNKFSGKIPDSMDFNCMMLS-LHLRN--NSFIGELPSSVKSFT-QLTVLDLGHNKI 655
+N+ S + + F + S LH+ N + I ++ S S+ L VLDLG N+I
Sbjct: 366 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 422
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 610 KIPDSMDFNCMMLSLHLRNNSFIGELPSS-VKSFTQLTVLDLGHNKISGIIPAWIGDSLP 668
++PD + N +L+L ++ + LP++ ++QLT LD+G N IS + P + LP
Sbjct: 23 QVPDDLPTNITVLNL---THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLP 78
Query: 669 DLVVLSLRSN 678
L VL+L+ N
Sbjct: 79 MLKVLNLQHN 88
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%)
Query: 576 LDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGEL 635
LD+ N +S P + L VLNL +N+ S + F + LHL +NS
Sbjct: 59 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 118
Query: 636 PSSVKSFTQLTVLDLGHNKISG 657
+ L LDL HN +S
Sbjct: 119 NNPFVKQKNLITLDLSHNGLSS 140
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 117/468 (25%), Positives = 189/468 (40%), Gaps = 90/468 (19%)
Query: 293 TSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNL-TDLLPNLFLKLSNCSRDTLEIL 350
+SL L+LS+NQ+ P F + RL L+ ++ L L L L+L+N S + L
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS---IRNL 227
Query: 351 QLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVA 410
L+++ L S T F LK +L MLD+ Y NN G S L QLE +
Sbjct: 228 SLSNSQL--STTSNTTFLGLKWTNL--TMLDLSY-NNLNVVGN--DSFAWLPQLEYFFLE 280
Query: 411 SNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFP-K 469
N+++ + + + L L + YL+L SF I L + + F +
Sbjct: 281 YNNIQHLFSHS-LHGLFNVRYLNLKR-------------SFTKQSISLASLPKIDDFSFQ 326
Query: 470 WLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPE 529
WL+ L++ +I N F L NL YL+LS N FT + ++ F +
Sbjct: 327 WLKC---LEHLNMEDNDIPGIKSNMFTGLI-NLKYLSLS-NSFTSLRTLTNETFVSLA-- 379
Query: 530 IDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPN 589
P+ + LT + + S + S+L H LDL N + EL
Sbjct: 380 --------HSPLHILNLTKNKI---SKIESDAFSWLG-----HLEVLDLGLNEIGQEL-- 421
Query: 590 CSKNWQKLT---VLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSF--IGELPSSVKSFTQ 644
+ W+ L + L+ NK+ +S + L LR + + PS +
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481
Query: 645 LTVLDLG------------------------HNKISGII-------PAWIGDSLPDLVVL 673
LT+LDL HN ++ + P + L L +L
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541
Query: 674 SLRSNNFHGRVPVQVCH-LQRIQVLDLSQNNISGTVPQCLNNLTAMTA 720
+L SN F +PV+V L ++++DL NN++ NN ++ +
Sbjct: 542 NLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 115/417 (27%), Positives = 178/417 (42%), Gaps = 63/417 (15%)
Query: 284 IPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNC 342
+PD PT+++ L+L++NQL +P + F +L +L N ++ L P L KL
Sbjct: 19 VPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP-- 73
Query: 343 SRDTLEILQLNSNMLRGSLPDITLF--SSLKELHLYDNMLDVLYLNNNRFTG-----TLT 395
L++L L N L L D T ++L ELHL N + + NN F TL
Sbjct: 74 ---MLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSN--SIQKIKNNPFVKQKNLITLD 127
Query: 396 KSIGQLSQLEL-----------LDVASNSLKGMITEA-HLSNLSRLTYLDLSHNSLILNF 443
S LS +L L +++N ++ + +E + S L L+LS N I F
Sbjct: 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEF 186
Query: 444 GSGWVPSF-ELNIIRLGACKQGPQFPKWLQTQ---NKFSELDVSAAEISDTVPNWFWDLS 499
G + L + L + GP + L + L +S +++S T F L
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246
Query: 500 -PNLYYLNLSHNHFT-------GMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSL 551
NL L+LS+N+ LP L F Y L ++S G L
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG------LFNVRY 300
Query: 552 ILFKNMF---SGSLSFLCQISDEHFR------YLDLSDNLLSGELPNCSKNWQKLTVLNL 602
+ K F S SL+ L +I D F+ +L++ DN + G N L L+L
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360
Query: 603 ANNKFSGKIPDSMDFNCMMLS-LHLRN--NSFIGELPSSVKSFT-QLTVLDLGHNKI 655
+N+ S + + F + S LH+ N + I ++ S S+ L VLDLG N+I
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 610 KIPDSMDFNCMMLSLHLRNNSFIGELPSS-VKSFTQLTVLDLGHNKISGIIPAWIGDSLP 668
++PD + N +L+L ++ + LP++ ++QLT LD+G N IS + P + LP
Sbjct: 18 QVPDDLPTNITVLNL---THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLP 73
Query: 669 DLVVLSLRSN 678
L VL+L+ N
Sbjct: 74 MLKVLNLQHN 83
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%)
Query: 576 LDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGEL 635
LD+ N +S P + L VLNL +N+ S + F + LHL +NS
Sbjct: 54 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113
Query: 636 PSSVKSFTQLTVLDLGHNKISG 657
+ L LDL HN +S
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSS 135
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 146/359 (40%), Gaps = 88/359 (24%)
Query: 292 PTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQ 351
P L YL +SNNQL +P+ +N L+ + D+N+L L P+L +LE +
Sbjct: 130 PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKL-PDL--------PPSLEFIA 179
Query: 352 LNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLEL-LD-- 408
+N L LP++ L +Y +NN S+ +L L L L+
Sbjct: 180 AGNNQLE-ELPELQNLP----------FLTAIYADNN--------SLKKLPDLPLSLESI 220
Query: 409 VASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFP 468
VA N++ + E L NL LT + +N +L PS E +R P+ P
Sbjct: 221 VAGNNILEELPE--LQNLPFLTTIYADNN--LLKTLPDLPPSLEALNVRDNYLTDLPELP 276
Query: 469 KWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPP 528
+ L + ++S+ + + +L PNLYYLN S N + DL
Sbjct: 277 QSL-----------TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC-DLPPSLE---- 320
Query: 529 EIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELP 588
E+++S N +P +P + LI F +L E+P
Sbjct: 321 ELNVSNNKLIE-LPALPPRLERLIA------------------SFNHL--------AEVP 353
Query: 589 NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTV 647
+N ++L V +F IP+S++ LR NS + E+P ++ QL V
Sbjct: 354 ELPQNLKQLHVEYNPLREFPD-IPESVE--------DLRMNSHLAEVPELPQNLKQLHV 403
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 116/254 (45%), Gaps = 53/254 (20%)
Query: 287 SAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRD 345
++FP+ L L+L+ N + +V P +F NL LR L SN L + +F LSN ++
Sbjct: 53 ASFPH---LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 346 TL---EILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLS 402
+ +I+ L M + +LK L + DN D++Y+++ F+G L+
Sbjct: 110 DISENKIVILLDYMFQD-------LYNLKSLEVGDN--DLVYISHRAFSG--------LN 152
Query: 403 QLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACK 462
LE L + +L + TEA LS+L L L L H +N IR + K
Sbjct: 153 SLEQLTLEKCNLTSIPTEA-LSHLHGLIVLRLRH--------------LNINAIRDYSFK 197
Query: 463 QGPQFPKWLQTQNKFSELDVSAAEISDTV-PNWFWDLSPNLYYLNLSHNHFTGMLPDLSQ 521
+ + L++S DT+ PN + L NL L+++H + T + P L+
Sbjct: 198 R----------LYRLKVLEISHWPYLDTMTPNCLYGL--NLTSLSITHCNLTAV-PYLAV 244
Query: 522 KFTAYPPEIDLSAN 535
+ Y ++LS N
Sbjct: 245 RHLVYLRFLNLSYN 258
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 27/221 (12%)
Query: 293 TSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQ 351
T+L+ LDLS N L V SF L LR L + NN+ L P F LSN +L+
Sbjct: 248 TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAF 307
Query: 352 LNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVAS 411
++ S P+I FS + L+ L +++N T + + L L+ L ++
Sbjct: 308 TKQSVSLASHPNIDDFS-----FQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSK 362
Query: 412 NSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWL 471
T L L+ T++ L+H+ P LN+ + K WL
Sbjct: 363 -------TFTSLQTLTNETFVSLAHS-----------PLLTLNLTKNHISKIANGTFSWL 404
Query: 472 QTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHF 512
+ LD+ EI + W N++ + LS+N +
Sbjct: 405 ---GQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 25/108 (23%)
Query: 597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKIS 656
+TVLNL +N+ ++P P++ ++QL +LD G N IS
Sbjct: 27 ITVLNLTHNQLR-RLP-----------------------PTNFTRYSQLAILDAGFNSIS 62
Query: 657 GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNI 704
+ P + LP L VL+L+ N + LDL N+I
Sbjct: 63 KLEPE-LCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSI 109
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 596 KLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKI 655
KL L ++ K +G IP D + LHL +N + +++L L LGHN+I
Sbjct: 173 KLNYLRISEAKLTG-IPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 656 SGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS 705
I + LP L L L NN RVP + L+ +QV+ L NNI+
Sbjct: 230 RMIENGSLS-FLPTLRELHL-DNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 11/68 (16%)
Query: 597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKIS 656
L + N++ N F DF + L+L NS + ELP+ +K+ + L VLDL HN+++
Sbjct: 234 LQIFNISANIFK------YDF---LTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT 283
Query: 657 GIIPAWIG 664
+PA +G
Sbjct: 284 S-LPAELG 290
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 298 LDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNML 357
LDLSN Q+ ++ + L LY + N+LT+ LP LSN L +L L+ N L
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSN-----LRVLDLSHNRL 282
Query: 358 RGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLK-- 415
++ LK + +DNM+ TL G L L+ L V N L+
Sbjct: 283 TSLPAELGSCFQLKYFYFFDNMV-----------TTLPWEFGNLCNLQFLGVEGNPLEKQ 331
Query: 416 --GMITEAHLSNL 426
++TE ++ L
Sbjct: 332 FLKILTEKSVTGL 344
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 106 NISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTS 165
NIS+++ L L + N ++PA I +L N+R LDLS+ T +P +LG+
Sbjct: 238 NISANIFKYDFLTRLYLNGNSL--TELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQ 294
Query: 166 LQYLDLSFNFDMLSKKLEW----LSQLSFL 191
L+Y + FD + L W L L FL
Sbjct: 295 LKYF---YFFDNMVTTLPWEFGNLCNLQFL 321
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 291 NPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
N ++L LDLS+N+L S+P + +L+ Y +N+ LP F L N L+ L
Sbjct: 268 NLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCN-----LQFL 321
Query: 351 QLNSNMLRGSLPDITLFSSLKELHLY--DNMLDVLYLNNNRFTGTLTKSIGQLSQLELLD 408
+ N L I S+ L Y DN ++ + RF T Q
Sbjct: 322 GVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTDGEPQREY----- 376
Query: 409 VASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGS----GWVPSFELN 454
+SL+ TE ++L++ T+ LS+N+L ++ + + PS+ L+
Sbjct: 377 ---DSLQ-QSTEHLATDLAKRTFTVLSYNTLCQHYATPKMYRYTPSWALS 422
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 146/351 (41%), Gaps = 43/351 (12%)
Query: 481 DVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGP 540
D+ +IS + ++S + LNL + F+ + Q FT E+DL+A +G
Sbjct: 234 DIDDEDISSAMLKGLCEMS--VESLNLQEHRFSDISSTTFQCFTQLQ-ELDLTATHLKG- 289
Query: 541 IPPIPLTVTSLILFKNMFSGSLSF--LCQISDEHF---RYLDLSDNLLSGELP-NCSKNW 594
+P + L L K + F LCQIS +F +L + N+ L C +
Sbjct: 290 ---LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKL 346
Query: 595 QKLTVLNLANNKFSGKIPDSMDFNCM--MLSLHLRNNSFIGELPSSVKSFTQLTVLDLGH 652
L L+L++N S+ + + +L+L +N +G + K QL +LDL
Sbjct: 347 GNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAF 406
Query: 653 NKISGIIPAWIGDSLPDLVVLSLR-----SNNFH--GRVPVQVCHLQRIQVLDLSQNNIS 705
++ P +L L VL+L ++N H +PV L N+
Sbjct: 407 TRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPV------------LRHLNLK 454
Query: 706 GTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLS 765
G N+ T K++ L + LL D + ++LG + +DLS
Sbjct: 455 G------NHFQDGTITKTNLLQTVGSLEVLILSSCGLL---SIDQQAFHSLGKMSHVDLS 505
Query: 766 SNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
N L + + S + I LNL+ NS+ P + L+ ++++LS N L
Sbjct: 506 HNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHNPL 556
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 25/187 (13%)
Query: 80 GVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSL 139
GV C + G++ L+L + S L L HL LN+ +N+ G Q AF
Sbjct: 339 GVGCLEKLGNLQTLDLSHND-IEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAF---- 393
Query: 140 KNIRHLDLSNAGFTG------RVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEY 193
K L+L + FT + P+Q NL LQ L+L++ F S + L+ L L +
Sbjct: 394 KECPQLELLDLAFTRLHINAPQSPFQ--NLHFLQVLNLTYCFLDTSNQ-HLLAGLPVLRH 450
Query: 194 VRLNQVNLGEA----TDWLQVVSQLPSLTELQLRGCNLPXXXXXXXXXXXXXXXXLAHLD 249
+ L + + T+ LQ V SL L L C L ++H+D
Sbjct: 451 LNLKGNHFQDGTITKTNLLQTVG---SLEVLILSSCGL----LSIDQQAFHSLGKMSHVD 503
Query: 250 LSLNDVS 256
LS N ++
Sbjct: 504 LSHNSLT 510
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 22/190 (11%)
Query: 347 LEILQLNSNMLRG-SLPDITLFSSLKELHLYDNMLDV--------------LYLNNNRFT 391
LEILQL+ N +R + ++L L L+DN L L+L NN
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149
Query: 392 GTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL--ILNFGSGWVP 449
+ + ++ L LD+ I+E LS L YL+L+ +L I N P
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL----TP 205
Query: 450 SFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSH 509
+L+ + L P Q +L + ++I N F +L +L +NL+H
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINLAH 264
Query: 510 NHFTGMLPDL 519
N+ T + DL
Sbjct: 265 NNLTLLPHDL 274
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 19/160 (11%)
Query: 284 IPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRAL-YQDSNNLTDLLPNLFLKLSN 341
IP+ AF + L L L NN + S+P +F + LR L + L+ + F LSN
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186
Query: 342 CSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQL 401
L L L LR +P++T L EL L N L + S L
Sbjct: 187 -----LRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIR----------PGSFQGL 230
Query: 402 SQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLIL 441
L+ L + + ++ +I NL L ++L+HN+L L
Sbjct: 231 MHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL 269
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 31/162 (19%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFR--NLCRLRALYQDSNNLTDLLPNL 335
+K Q P + P+ T+L LDLS+N L + + L L +L N+L +
Sbjct: 26 SKQQLPNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA 83
Query: 336 FLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELH---LYDNMLDV---------- 382
F+ + N L L L+SN L D LFS L+ L LY+N + V
Sbjct: 84 FVPVPN-----LRYLDLSSNHLHTL--DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136
Query: 383 ----LYLNNN---RFTGTLTKSIGQLSQLELLDVASNSLKGM 417
LYL+ N RF L K +L +L LLD++SN LK +
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 635 LPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRI 694
+P S+ S+T L LDL HN +S + W L +L L L N+ + + +
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 695 QVLDLSQNNI 704
+ LDLS N++
Sbjct: 91 RYLDLSSNHL 100
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 372 ELHLYDNMLDV--LYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRL 429
E ++D+++++ LY N+N+ T T +L+QL LD+ N LK I NL L
Sbjct: 49 EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSL 107
Query: 430 TYLDLSHN 437
T++ L +N
Sbjct: 108 THIYLYNN 115
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALY 322
NKL IP F T L+ LDL++N L S+P+ +F NL L +Y
Sbjct: 67 NKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 10/154 (6%)
Query: 77 KWRGVSCSN-QTGHVTMLNLQFRSYMPL---RGNISSSLIGLQHLNYLNMKYN--DFGGK 130
KW+ +S Q L+L F + L +G+IS + L L+YL++ N F G
Sbjct: 303 KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGC 362
Query: 131 QIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSF 190
+ +G+ ++RHLDLS G +G L LQ+LD F L + E+ + LS
Sbjct: 363 CSYSDLGT-NSLRHLDLSFNGAIIMSANFMG-LEELQHLD--FQHSTLKRVTEFSAFLSL 418
Query: 191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRG 224
+ + L+ D+ + L SL L++ G
Sbjct: 419 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 452
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 398 IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHN 437
IGQL L+ L+VA N + A+ SNL+ L ++DLS+N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 294 SLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPN--LFLKLSNCSRDTLEILQ 351
SLSYLDLS N L SF C L +S DL N + + + + L+ L
Sbjct: 346 SLSYLDLSRNAL-----SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 400
Query: 352 LNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNN-RFTGTLTKSIGQLSQLELLDVA 410
+ L+ + + + F SL++L LY LD+ Y N F G +G L+ L L +A
Sbjct: 401 FQHSTLK-RVTEFSAFLSLEKL-LY---LDISYTNTKIDFDGIF---LG-LTSLNTLKMA 451
Query: 411 SNSLKGMITEAHLSNLSRLTYLDLS 435
NS K +N + LT+LDLS
Sbjct: 452 GNSFKDNTLSNVFANTTNLTFLDLS 476
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 10/154 (6%)
Query: 77 KWRGVSCSN-QTGHVTMLNLQFRSYMPL---RGNISSSLIGLQHLNYLNMKYN--DFGGK 130
KW+ +S Q L+L F + L +G+IS + L L+YL++ N F G
Sbjct: 308 KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGC 367
Query: 131 QIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSF 190
+ +G+ ++RHLDLS G +G L LQ+LD F L + E+ + LS
Sbjct: 368 CSYSDLGT-NSLRHLDLSFNGAIIMSANFMG-LEELQHLD--FQHSTLKRVTEFSAFLSL 423
Query: 191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRG 224
+ + L+ D+ + L SL L++ G
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 398 IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHN 437
IGQL L+ L+VA N + A+ SNL+ L ++DLS+N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 294 SLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPN--LFLKLSNCSRDTLEILQ 351
SLSYLDLS N L SF C L +S DL N + + + + L+ L
Sbjct: 351 SLSYLDLSRNAL-----SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405
Query: 352 LNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNN-RFTGTLTKSIGQLSQLELLDVA 410
+ L+ + + + F SL++L LY LD+ Y N F G +G L+ L L +A
Sbjct: 406 FQHSTLK-RVTEFSAFLSLEKL-LY---LDISYTNTKIDFDGIF---LG-LTSLNTLKMA 456
Query: 411 SNSLKGMITEAHLSNLSRLTYLDLS 435
NS K +N + LT+LDLS
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLS 481
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 21/139 (15%)
Query: 291 NPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
N T L + ++NNQ+ + NL L L +N +TD+ P L+N +R L
Sbjct: 83 NLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNR-----L 134
Query: 351 QLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVA 410
+L+SN ++ DI+ S L L L ++N+ T K + L+ LE LD++
Sbjct: 135 ELSSN----TISDISALSGLTSLQ-------QLSFSSNQVTDL--KPLANLTTLERLDIS 181
Query: 411 SNSLKGMITEAHLSNLSRL 429
SN + + A L+NL L
Sbjct: 182 SNKVSDISVLAKLTNLESL 200
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 603 ANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAW 662
NN+ S P + N LSL+ IG L S T LT LDL +N+IS + P
Sbjct: 203 TNNQISDITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPL- 257
Query: 663 IGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP-QCLNNLTAMT 719
L L L L +N P + L + L+L++N + P L NLT +T
Sbjct: 258 --SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLT 311
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 21/139 (15%)
Query: 291 NPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
N T L + ++NNQ+ + NL L L +N +TD+ P L+N +R L
Sbjct: 83 NLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNR-----L 134
Query: 351 QLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVA 410
+L+SN ++ DI+ S L L L ++N+ T K + L+ LE LD++
Sbjct: 135 ELSSN----TISDISALSGLTSLQ-------QLSFSSNQVTDL--KPLANLTTLERLDIS 181
Query: 411 SNSLKGMITEAHLSNLSRL 429
SN + + A L+NL L
Sbjct: 182 SNKVSDISVLAKLTNLESL 200
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 603 ANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAW 662
NN+ S P + N LSL+ IG L S T LT LDL +N+IS + P
Sbjct: 203 TNNQISDITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPL- 257
Query: 663 IGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP-QCLNNLTAMT 719
L L L L +N P + L + L+L++N + P L NLT +T
Sbjct: 258 --SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLT 311
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 21/139 (15%)
Query: 291 NPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
N T L + ++NNQ+ + NL L L +N +TD+ P L+N +R L
Sbjct: 83 NLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNR-----L 134
Query: 351 QLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVA 410
+L+SN ++ DI+ S L L L ++N+ T K + L+ LE LD++
Sbjct: 135 ELSSN----TISDISALSGLTSLQ-------QLNFSSNQVTDL--KPLANLTTLERLDIS 181
Query: 411 SNSLKGMITEAHLSNLSRL 429
SN + + A L+NL L
Sbjct: 182 SNKVSDISVLAKLTNLESL 200
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 603 ANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAW 662
NN+ S P + N LSL+ IG L S T LT LDL +N+IS + P
Sbjct: 203 TNNQISDITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPL- 257
Query: 663 IGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP-QCLNNLTAMT 719
L L L L +N P + L + L+L++N + P L NLT +T
Sbjct: 258 --SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLT 311
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 28/146 (19%)
Query: 287 SAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDT 346
+ N T L + ++NNQ+ + NL L L +N +TD+ P L+N +R
Sbjct: 79 TPLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNR-- 133
Query: 347 LEILQLNSNMLRGSLPDITLFS---SLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQ 403
L+L+SN ++ DI+ S SL++L+ + + D+ K + L+
Sbjct: 134 ---LELSSN----TISDISALSGLTSLQQLNFGNQVTDL-------------KPLANLTT 173
Query: 404 LELLDVASNSLKGMITEAHLSNLSRL 429
LE LD++SN + + A L+NL L
Sbjct: 174 LERLDISSNKVSDISVLAKLTNLESL 199
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 19/166 (11%)
Query: 562 LSFLCQISD-------EHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDS 614
L+F Q++D LD+S N +S ++ +K L L NN+ S P
Sbjct: 156 LNFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAK-LTNLESLIATNNQISDITPLG 213
Query: 615 MDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLS 674
+ N LSL+ IG L S T LT LDL +N+IS + P L L L
Sbjct: 214 ILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPL---SGLTKLTELK 266
Query: 675 LRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP-QCLNNLTAMT 719
L +N P + L + L+L++N + P L NLT +T
Sbjct: 267 LGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLT 310
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 28/142 (19%)
Query: 291 NPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
N T L + ++NNQ+ + NL L L +N +TD+ P L+N +R L
Sbjct: 83 NLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNR-----L 134
Query: 351 QLNSNMLRGSLPDITLFS---SLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELL 407
+L+SN ++ DI+ S SL++L+ + + D+ K + L+ LE L
Sbjct: 135 ELSSN----TISDISALSGLTSLQQLNFGNQVTDL-------------KPLANLTTLERL 177
Query: 408 DVASNSLKGMITEAHLSNLSRL 429
D++SN + + A L+NL L
Sbjct: 178 DISSNKVSDISVLAKLTNLESL 199
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 19/166 (11%)
Query: 562 LSFLCQISD-------EHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDS 614
L+F Q++D LD+S N +S ++ +K L L NN+ S P
Sbjct: 156 LNFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAK-LTNLESLIATNNQISDITPLG 213
Query: 615 MDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLS 674
+ N LSL+ IG L S T LT LDL +N+IS + P L L L
Sbjct: 214 ILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPL---SGLTKLTELK 266
Query: 675 LRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP-QCLNNLTAMT 719
L +N P + L + L+L++N + P L NLT +T
Sbjct: 267 LGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLT 310
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 296 SYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDL-LPNL-FLKLSNCSRDTLEILQLN 353
S +D SN L VPK R +AL N++++L +P++ FL L +L+L+
Sbjct: 34 SMVDYSNRNLTHVPKDLPP--RTKALSLSQNSISELRMPDISFL-------SELRVLRLS 84
Query: 354 SNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNS 413
N +R D +F L++ L+ L +++NR S ++ L LD++ N
Sbjct: 85 HNRIRSL--DFHVF-------LFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFND 132
Query: 414 LKGMITEAHLSNLSRLTYLDLS 435
+ NL++LT+L LS
Sbjct: 133 FDVLPVCKEFGNLTKLTFLGLS 154
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 8/124 (6%)
Query: 245 LAHLDLSLNDVSNSVYYWLFNXXXXXXXXXXXXNKLQGPIPDSAFPNPTSLSYLDLSNNQ 304
L LD+SLN +++ Y N L G + P + LDL NN+
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL---PPKVKVLDLHNNR 461
Query: 305 LVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDI 364
++S+PK +L L+ L SN L + +F +L+ +L+ + L+ N + P I
Sbjct: 462 IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT-----SLQYIWLHDNPWDCTCPGI 516
Query: 365 TLFS 368
S
Sbjct: 517 RYLS 520
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 576 LDLSDNLLSGELPNCSKNW-QKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGE 634
LD+S N L+ + + W + + VLNL++N +G + + +L LH N+ I
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NNRIMS 464
Query: 635 LPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVP 685
+P V L L++ N++ +P + D L L + L N + P
Sbjct: 465 IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 28/142 (19%)
Query: 291 NPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
N T L + ++NNQ+ + NL L L +N +TD+ P L+N +R L
Sbjct: 87 NLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNR-----L 138
Query: 351 QLNSNMLRGSLPDITLFS---SLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELL 407
+L+SN ++ DI+ S SL++L + + D+ K + L+ LE L
Sbjct: 139 ELSSN----TISDISALSGLTSLQQLSFGNQVTDL-------------KPLANLTTLERL 181
Query: 408 DVASNSLKGMITEAHLSNLSRL 429
D++SN + + A L+NL L
Sbjct: 182 DISSNKVSDISVLAKLTNLESL 203
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 72/166 (43%), Gaps = 19/166 (11%)
Query: 562 LSFLCQISD-------EHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDS 614
LSF Q++D LD+S N +S ++ +K L L NN+ S P
Sbjct: 160 LSFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAK-LTNLESLIATNNQISDITPLG 217
Query: 615 MDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLS 674
+ N LSL+ IG L S T LT LDL +N+IS + P L L L
Sbjct: 218 ILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPL---SGLTKLTELK 270
Query: 675 LRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP-QCLNNLTAMT 719
L +N P + L + L+L++N + P L NLT +T
Sbjct: 271 LGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLT 314
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 53/241 (21%)
Query: 284 IPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNC 342
+P F N L+ L L N L S+P+ F N +L L +NNL + + F +
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-- 165
Query: 343 SRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLS 402
+L+ LQL+SN R + D++L SL ++ N+L TL I
Sbjct: 166 ---SLQNLQLSSN--RLTHVDLSLIPSLFHANVSYNLL-----------STLAIPIA--- 206
Query: 403 QLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSF----------- 451
+E LD + NS+ + ++ LT L L HN+L + W+ ++
Sbjct: 207 -VEELDASHNSINVVRGPVNV----ELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYN 258
Query: 452 ELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNH 511
EL I + + + + N+ L++ I P L L+LSHNH
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI------------PTLKVLDLSHNH 306
Query: 512 F 512
Sbjct: 307 L 307
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 28/142 (19%)
Query: 291 NPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
N T L + ++NNQ+ + NL L L +N +TD+ P L+N +R L
Sbjct: 88 NLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNR-----L 139
Query: 351 QLNSNMLRGSLPDITLFS---SLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELL 407
+L+SN ++ DI+ S SL++L + + D+ K + L+ LE L
Sbjct: 140 ELSSN----TISDISALSGLTSLQQLSFGNQVTDL-------------KPLANLTTLERL 182
Query: 408 DVASNSLKGMITEAHLSNLSRL 429
D++SN + + A L+NL L
Sbjct: 183 DISSNKVSDISVLAKLTNLESL 204
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 72/166 (43%), Gaps = 19/166 (11%)
Query: 562 LSFLCQISD-------EHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDS 614
LSF Q++D LD+S N +S ++ +K L L NN+ S P
Sbjct: 161 LSFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAK-LTNLESLIATNNQISDITPLG 218
Query: 615 MDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLS 674
+ N LSL+ IG L S T LT LDL +N+IS + P L L L
Sbjct: 219 ILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPL---SGLTKLTELK 271
Query: 675 LRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP-QCLNNLTAMT 719
L +N P + L + L+L++N + P L NLT +T
Sbjct: 272 LGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLT 315
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 53/241 (21%)
Query: 284 IPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNC 342
+P F N L+ L L N L S+P+ F N +L L +NNL + + F +
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-- 171
Query: 343 SRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLS 402
+L+ LQL+SN L + D++L SL ++ N+L TL I
Sbjct: 172 ---SLQNLQLSSNRL--THVDLSLIPSLFHANVSYNLL-----------STLAIPIA--- 212
Query: 403 QLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSF----------- 451
+E LD + NS+ + ++ LT L L HN+L + W+ ++
Sbjct: 213 -VEELDASHNSINVVRGPVNVE----LTILKLQHNNLT---DTAWLLNYPGLVEVDLSYN 264
Query: 452 ELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNH 511
EL I + + + + N+ L++ I P L L+LSHNH
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI------------PTLKVLDLSHNH 312
Query: 512 F 512
Sbjct: 313 L 313
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 110/475 (23%), Positives = 197/475 (41%), Gaps = 66/475 (13%)
Query: 284 IPDSAFPNPTSLSYLDLSNNQLVS--VPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSN 341
+ D F N +L+ LDLS NQ+ S + SF L L+++ SN + + + +L
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH---ELEP 170
Query: 342 CSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNM-LDVLYLNNNRF----TGTLTK 396
TL L +N L + K ++ + NM L++L ++ N + TG +
Sbjct: 171 LQGKTLSFFSLAANSLYSRVS----VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226
Query: 397 SIGQLSQLELLDVASNSLKGMITEAH---------LSNLSR--LTYLDLSHNSLILNFGS 445
+I + L + ++ + G H + L+R + +LDLSH + + S
Sbjct: 227 AISKSQAFSL--ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH-GFVFSLNS 283
Query: 446 GWVPSF-ELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYY 504
+ +L ++ L K + + L++S + + + F+ L P + Y
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL-PKVAY 342
Query: 505 LNLSHNHFTGMLPDLSQKFTAYPPEIDLSANS-----FEGPIPPIPLTVTSLILFKNMFS 559
++L NH ++ D + KF +DL N+ F IP I L+ L+ +
Sbjct: 343 IDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI-- 399
Query: 560 GSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSM---- 615
+ L +S+ LD+ LL +P+ L +L L N+FS D
Sbjct: 400 NLTANLIHLSENRLENLDILYFLL--RVPH-------LQILILNQNRFSSCSGDQTPSEN 450
Query: 616 -DFNCMMLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVL 673
+ L ++ ++ EL V + + L VL L HN ++ + P + L L L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG-VFSHLTALRGL 509
Query: 674 SLRSNNF----HGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM--TANK 722
SL SN H +P +++LD+S+N + P +L+ + T NK
Sbjct: 510 SLNSNRLTVLSHNDLPAN------LEILDISRNQLLAPNPDVFVSLSVLDITHNK 558
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 624 LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH 681
L+L +N P TQLT LDL +N+++ ++PA + D L L LSL N
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK 99
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 624 LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH 681
L+L +N P TQLT LDL +N+++ ++PA + D L L LSL N
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK 91
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 79/205 (38%), Gaps = 46/205 (22%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV--------------------------PKS 311
N L G I +AF T L LDLS+N + V P
Sbjct: 65 NALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGL 123
Query: 312 FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLK 371
FR L L+ LY NNL L N F L N L L L+ N + S+P+ + +
Sbjct: 124 FRGLAALQYLYLQDNNLQALPDNTFRDLGN-----LTHLFLHGNRI-PSVPE----HAFR 173
Query: 372 ELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTY 431
LH LD L L+ N + L +L L + +N+L + E L L L Y
Sbjct: 174 GLH----SLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEV-LVPLRSLQY 228
Query: 432 LDLSHNSLILNFGS----GWVPSFE 452
L L+ N + + + W+ F
Sbjct: 229 LRLNDNPWVCDCRARPLWAWLQKFR 253
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 760 KSIDLSSNRL-YGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMR 818
+ I L NR+ Y S L L L N+L G + GLTLL LDLS N +R
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 819 AT 820
Sbjct: 94 VV 95
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 624 LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNF 680
L+L +N P TQLT LDL +N+++ ++PA + D L L LSL N
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQL 90
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 382 VLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
VLYL +NR T +L+QL LD+ +N L ++ L++LT L L+ N L
Sbjct: 34 VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQL 90
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 84/213 (39%), Gaps = 24/213 (11%)
Query: 355 NMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSL 414
N L G LP L L+L N + + N FT Q+E L A N L
Sbjct: 340 NQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFT----------EQVENLSFAHNKL 389
Query: 415 KGMITEAHLSNLSRLTYLDLSHNSLILNFGSGW-----VPSFELNIIRLG-ACKQGPQFP 468
K + ++S + +D S+N + G + P +N+ + + Q +FP
Sbjct: 390 KYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449
Query: 469 KWL-QTQNKFSELDVSAAEISDTVPNWFWDLSPN------LYYLNLSHNHFTGMLPDLSQ 521
K L T + S +++ +++ N D + N L ++L N T + D
Sbjct: 450 KELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509
Query: 522 KFTAYPPEIDLSANSFEGPIPPIPLTVTSLILF 554
Y IDLS NSF P PL ++L F
Sbjct: 510 TTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGF 541
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 398 IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
IG L L+ L+VA N ++ + SNL+ L +LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 113 GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLS 172
L HL+ L + N + AF G L +++ L + +G+L +L+ L+++
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132
Query: 173 FNFDMLSKKLEWLSQLSFLEYVRL--NQVNLGEATDWLQVVSQLP 215
N K E+ S L+ LE++ L N++ TD L+V+ Q+P
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMP 176
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 398 IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
IG L L+ L+VA N ++ + SNL+ L +LDLS N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 113 GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLS 172
L HL+ L + N + AF G L +++ L + +G+L +L+ L+++
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 133
Query: 173 FNFDMLSKKLEWLSQLSFLEYVRL--NQVNLGEATDWLQVVSQLP 215
N K E+ S L+ LE++ L N++ TD L+V+ Q+P
Sbjct: 134 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMP 177
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 398 IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
IG L L+ L+VA N ++ + SNL+ L +LDLS N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 113 GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLS 172
L HL+ L + N + AF G L +++ L + +G+L +L+ L+++
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 133
Query: 173 FNFDMLSKKLEWLSQLSFLEYVRL--NQVNLGEATDWLQVVSQLP 215
N K E+ S L+ LE++ L N++ TD L+V+ Q+P
Sbjct: 134 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMP 177
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 398 IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
IG L L+ L+VA N ++ + SNL+ L +LDLS N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 113 GLQHLNYLNMKYNDFGGKQIPAFIG--SLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLD 170
L HL+ L + N + AF G SL+ + L+ + A + +G+L +L+ L+
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLEN---FPIGHLKTLKELN 132
Query: 171 LSFNFDMLSKKLEWLSQLSFLEYVRL--NQVNLGEATDWLQVVSQLP 215
++ N K E+ S L+ LE++ L N++ TD L+V+ Q+P
Sbjct: 133 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMP 178
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 398 IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
IG L L+ L+VA N ++ + SNL+ L +LDLS N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 113 GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLS 172
L HL+ L + N + AF G L +++ L + +G+L +L+ L+++
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 134
Query: 173 FNFDMLSKKLEWLSQLSFLEYVRL--NQVNLGEATDWLQVVSQLP 215
N K E+ S L+ LE++ L N++ TD L+V+ Q+P
Sbjct: 135 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMP 178
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 284 IPDSAFPNPTSLSYLDLSNNQLVS-VPKSFRNLCRLRALYQDSNNLTDLLPNLF 336
IP AF L +DLSNNQ+ P +F+ L L +L N +T+L +LF
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 284 IPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNLTDLLPNLF 336
IP AF L +DLSNNQ+ + P +F+ L L +L N +T+L +LF
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651
+ +KL+ + +A+ + IP + + + LHL N +S+K L L L
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG 706
N IS + + ++ P L L L +N +VP + + IQV+ L NNIS
Sbjct: 225 FNSISAVDNGSLANT-PHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 35/146 (23%)
Query: 191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPXXXXXXXXXXXXXXXXLAHLDL 250
L Y+R+ N+ L PSLTEL L G + LA L L
Sbjct: 173 LSYIRIADTNITTIPQGLP-----PSLTELHLDGNKI----TKVDAASLKGLNNLAKLGL 223
Query: 251 SLNDVSNSVYYWLFNXXXXXXXXXXXXNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK 310
S N +S + + + N L L L+NN+LV VP
Sbjct: 224 SFNSIS--------------------------AVDNGSLANTPHLRELHLNNNKLVKVPG 257
Query: 311 SFRNLCRLRALYQDSNNLTDLLPNLF 336
+ ++ +Y +NN++ + N F
Sbjct: 258 GLADHKYIQVVYLHNNNISAIGSNDF 283
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651
+ +KL+ + +A+ + IP + + + LHL N +S+K L L L
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG 706
N IS + + ++ P L L L +N +VP + + IQV+ L NNIS
Sbjct: 225 FNSISAVDNGSLANT-PHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 35/146 (23%)
Query: 191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPXXXXXXXXXXXXXXXXLAHLDL 250
L Y+R+ N+ L PSLTEL L G + LA L L
Sbjct: 173 LSYIRIADTNITTIPQGLP-----PSLTELHLDGNKI----TKVDAASLKGLNNLAKLGL 223
Query: 251 SLNDVSNSVYYWLFNXXXXXXXXXXXXNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK 310
S N +S + + + N L L L+NN+LV VP
Sbjct: 224 SFNSIS--------------------------AVDNGSLANTPHLRELHLNNNKLVKVPG 257
Query: 311 SFRNLCRLRALYQDSNNLTDLLPNLF 336
+ ++ +Y +NN++ + N F
Sbjct: 258 GLADHKYIQVVYLHNNNISAIGSNDF 283
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 32/138 (23%)
Query: 571 EHFRYLDLSDNLLSGE-LPN--CSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLR 627
+ +LDLS+NL+ E L N C W L L L+ N HLR
Sbjct: 360 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-------------------HLR 400
Query: 628 NNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPD-LVVLSLRSNNFHGRVPV 686
+ GE+ ++K+ LT LD+ N P P+ + L+L S G V
Sbjct: 401 SMQKTGEILLTLKN---LTSLDISRNTFH---PMPDSCQWPEKMRFLNLSST---GIRVV 451
Query: 687 QVCHLQRIQVLDLSQNNI 704
+ C Q ++VLD+S NN+
Sbjct: 452 KTCIPQTLEVLDVSNNNL 469
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 32/138 (23%)
Query: 571 EHFRYLDLSDNLLSGE-LPN--CSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLR 627
+ +LDLS+NL+ E L N C W L L L+ N HLR
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-------------------HLR 374
Query: 628 NNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPD-LVVLSLRSNNFHGRVPV 686
+ GE+ ++K+ LT LD+ N P P+ + L+L S G V
Sbjct: 375 SMQKTGEILLTLKN---LTSLDISRNTFH---PMPDSCQWPEKMRFLNLSST---GIRVV 425
Query: 687 QVCHLQRIQVLDLSQNNI 704
+ C Q ++VLD+S NN+
Sbjct: 426 KTCIPQTLEVLDVSNNNL 443
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 624 LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGR 683
L+L N F +P + ++ LT++DL +N+IS + + + L+ L L N
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN-MTQLLTLILSYNRLRCI 93
Query: 684 VPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMT 719
P L+ +++L L N+IS N+L+A++
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 383 LYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
LYL+ N+FT + K + L L+D+++N + + ++ SN+++L L LS+N L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTLILSYNRL 90
>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|B Chain B, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|C Chain C, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|D Chain D, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
Length = 391
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 645 LTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNI 704
++V+D+ NK++ IP S P V+S +V V H + ++D + NN+
Sbjct: 14 ISVIDVTSNKVTATIPVG---SNPXGAVISPDGT----KVYVANAHSNDVSIIDTATNNV 66
Query: 705 SGTVP 709
TVP
Sbjct: 67 IATVP 71
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 383 LYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHL-SNLSRLTYLDLSHNSLIL 441
L +NN T T+ ++ G L++LE L + N LK + A + + + L LD+S NS+
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 442 NFGSG---WVPSF 451
+ G W S
Sbjct: 389 DEKKGDCSWTKSL 401
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 29/169 (17%)
Query: 636 PSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH--GRVPVQVCHLQR 693
PS + F L D +N ++ + G L +L L L+ N ++ ++
Sbjct: 320 PSKISPFLHL---DFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMTTQMKS 375
Query: 694 IQVLDLSQNNISGTVPQ--CLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSE 751
+Q LD+SQN++S + C + ++ N SSN + D+
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL--------------------TDTI 415
Query: 752 YRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKI 800
+R +K +DL SN++ +V L L LN++ N L +P I
Sbjct: 416 FRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS-VPDGI 463
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 144 HLDLSNAGFTGRVPYQLGNLTSLQYLDLSFN-FDMLSKKLEWLSQLSFLEYVRLNQ 198
HLD SN T V G+LT L+ L L N LSK E +Q+ L+ + ++Q
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 41/125 (32%)
Query: 353 NSNMLRGSLPDITLFSSLKELHLYDNM--------------------------------- 379
NSN+ SL + F++LKELHL N
Sbjct: 50 NSNI--QSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC 107
Query: 380 LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
L L+L+NN T S+ L LE+L + +N LK ++ L LS+L LDL H +
Sbjct: 108 LSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDL-HGNE 161
Query: 440 ILNFG 444
I N G
Sbjct: 162 ITNTG 166
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 25/147 (17%)
Query: 299 DLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLR 358
D SN Q ++ + F NL + L+ N ++DL P L + ++ LE L +N N L+
Sbjct: 49 DNSNIQSLAGMQFFTNL---KELHLSHNQISDLSP-----LKDLTK--LEELSVNRNRLK 98
Query: 359 G--SLPDI---TLFSSLKELHLYDNM-----LDVLYLNNNRFTGTLTKSIGQLSQLELLD 408
+P LF EL D++ L++L + NN+ + +G LS+LE+LD
Sbjct: 99 NLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLD 156
Query: 409 VASNSLKGMITEAHLSNLSRLTYLDLS 435
+ N + L+ L ++ ++DL+
Sbjct: 157 LHGNEITNT---GGLTRLKKVNWIDLT 180
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 717 AMTANKSSNAMIRY--PLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDL 764
M K NA+I P TD N AL + K D E + T+G++ +DL
Sbjct: 161 VMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDL 210
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 147/356 (41%), Gaps = 56/356 (15%)
Query: 365 TLFSSLKELHL--YDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAH 422
T FS L++L + L + NN F G + I +L + L + + + G
Sbjct: 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG------ 101
Query: 423 LSNLSRLTYLDLSHNSLILNFGSGWVP--SFELNIIRLGACKQGPQFPKWLQTQNKFSEL 480
L+NL LT + + +L+ G+ + P S E+ ++R K+ Q + +F L
Sbjct: 102 LANLEVLTLTQCNLDGAVLS-GNFFKPLTSLEMLVLRDNNIKK-IQPASFFLNMRRFHVL 159
Query: 481 DVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGM-LPDLS-QKFTAYPPEIDLSANSFE 538
D++ ++ DL LN HFT + L ++ Q Y + N F+
Sbjct: 160 DLTFNKVKSICEE---DL------LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210
Query: 539 GPIPPIPLTVTSLILFKNMFSGSLS--FLCQISDEHFRYLDLSDNLLSGELPNCSKNWQK 596
++T+L L N F S++ F I+ + L LS++ G
Sbjct: 211 NT------SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS---------- 254
Query: 597 LTVLNLANNKFSGKIPDSMDFNCMMLS----LHLRNNSFIGELPSSVKSFTQLTVLDLGH 652
+ + F K PD+ F + S L + L S FT L L L
Sbjct: 255 ----SFGHTNF--KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308
Query: 653 NKISGIIP-AWIGDSLPDLVVLSLRSNNFHGRVPVQVCH-LQRIQVLDLSQNNISG 706
N+I+ I A+ G L L+ L+L S NF G + ++ L +++VLDLS N+I
Sbjct: 309 NEINKIDDNAFWG--LTHLLKLNL-SQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 94/410 (22%), Positives = 164/410 (40%), Gaps = 80/410 (19%)
Query: 292 PTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQD---------SNNLTDLLPNLFLKLSN 341
P ++Y+DLS N + + + SF L L+ L + +N L + LKL
Sbjct: 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL-- 86
Query: 342 CSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQL 401
D + LQL + G ++L+ L L LD L+ N F L
Sbjct: 87 ---DYNQFLQLETGAFNG-------LANLEVLTLTQCNLDGAVLSGNFFK--------PL 128
Query: 402 SQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL-------ILNFGSGWVPSFELN 454
+ LE+L + N++K + + N+ R LDL+ N + +LNF L+
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188
Query: 455 IIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTG 514
I L + + W + N F ++ DLS N + +++ F
Sbjct: 189 SITLQDMNE--YWLGWEKCGNPFKNTSITTL-----------DLSGNGFKESMAKRFFDA 235
Query: 515 MLPDLSQKF---TAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDE 571
+ Q +Y +F+ P FK + + +
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDP---------DNFTFKGLEASGV--------- 277
Query: 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFN-CMMLSLHLRNNS 630
+ DLS + + L + ++ L L LA N+ + KI D+ + +L L+L N
Sbjct: 278 --KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN- 333
Query: 631 FIGELPSSV-KSFTQLTVLDLGHNKISGI-IPAWIGDSLPDLVVLSLRSN 678
F+G + S + ++ +L VLDL +N I + +++G LP+L L+L +N
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG--LPNLKELALDTN 381
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 121 NMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGR--VPYQLGNLTSLQYLDLSFN 174
NM+ D G + + L+N++ LDLS++ QL NL LQYL+LS+N
Sbjct: 334 NMRKLDLGTR----CLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYN 385
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 16/125 (12%)
Query: 111 LIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTG---RVPYQ-LGNLTSL 166
L L+HL YLN+ YN+ G + AF K L+L + FT + P+ NL L
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAF----KECPQLELLDVAFTHLHVKAPHSPFQNLHLL 426
Query: 167 QYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEA----TDWLQVVSQLPSLTELQL 222
+ L+LS S + L+ L L ++ L + + T+ LQ+V SL L L
Sbjct: 427 RVLNLSHCLLDTSNQ-HLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVG---SLEILIL 482
Query: 223 RGCNL 227
CNL
Sbjct: 483 SSCNL 487
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 347 LEILQLNSNMLRG-SLPDITLFSSLKELHLYDNMLDV--------------LYLNNNRFT 391
LE+LQL N +R + +SL L L+DN L V L+L NN
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 392 GTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDL 434
+ + ++ L LD+ I+E L L YL+L
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203
>pdb|3G04|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
pdb|2XWT|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Blocking Type Tshr Autoantibody
Length = 239
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 47/188 (25%)
Query: 284 IPDSAFPNPTSLSYL----DLSNNQLVSVPKSFRNLCRLRAL-YQDSNNLTDLLPNL--- 335
IP AF N ++S + D++ QL S SF NL ++ + +++ NLT + P+
Sbjct: 46 IPSHAFSNLPNISRIYVSIDVTLQQLES--HSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103
Query: 336 -----FLKLSNC------------SRDTLEILQLNSNMLRGSLP----------DITL-- 366
FL + N S D IL++ N S+P +TL
Sbjct: 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163
Query: 367 ----FSSLKELHLYDNMLDVLYLNNNRFTGTLTKSI--GQLSQLELLDVASNSLKGMITE 420
F+S++ LD +YLN N++ + K G S LLDV+ S+ + ++
Sbjct: 164 YNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223
Query: 421 A--HLSNL 426
HL L
Sbjct: 224 GLEHLKEL 231
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 383 LYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILN 442
L L+NNR T + + L+ L + SN + I E S+L L +LDLS+N L N
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLS-N 88
Query: 443 FGSGW 447
S W
Sbjct: 89 LSSSW 93
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 19/94 (20%)
Query: 292 PTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDL--LPNLFLKLSNCSRDTLEI 349
P L L +S+NQL S+P LC+L A +N LT L LP+ L+
Sbjct: 140 PPGLQELSVSDNQLASLPALPSELCKLWAY---NNQLTSLPMLPS-----------GLQE 185
Query: 350 LQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVL 383
L ++ N L SLP TL S L +L Y+N L L
Sbjct: 186 LSVSDNQL-ASLP--TLPSELYKLWAYNNRLTSL 216
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 383 LYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILN 442
L L+NNR T + + L+ L + SN + I E S+L L +LDLS+N L N
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLS-N 114
Query: 443 FGSGW 447
S W
Sbjct: 115 LSSSW 119
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 19/143 (13%)
Query: 293 TSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQL 352
TSL Y NQ+ + N RL +L +N +TDL P L+N S+ L L++
Sbjct: 199 TSLHYFTAYVNQITDITP-VANXTRLNSLKIGNNKITDLSP-----LANLSQ--LTWLEI 250
Query: 353 NSNMLR--GSLPDITLFSSL-------KELHLYDNM--LDVLYLNNNRFTGTLTKSIGQL 401
+N + ++ D+T L ++ + +N+ L+ L+LNNN+ + IG L
Sbjct: 251 GTNQISDINAVKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGL 310
Query: 402 SQLELLDVASNSLKGMITEAHLS 424
+ L L ++ N + + A LS
Sbjct: 311 TNLTTLFLSQNHITDIRPLASLS 333
>pdb|4EKU|A Chain A, Crystal Structure Of Ferm Domain Of Proline-Rich Tyrosine
Kinase 2
Length = 392
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 701 QNNISGTVPQCLNNLTAMTANKSSNA-MIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLV 759
Q I G PQ L+ T+ A + A +I R + +L++ RKD E RN+L +
Sbjct: 304 QLGIEGA-PQALSIKTSSLAEAENMADLIDGYCRLQGEHQGSLIIHPRKDGEKRNSLPQI 362
Query: 760 KSIDLSSNR------------LYGEIPEVT 777
++L + R +Y EIP+ T
Sbjct: 363 PMLNLEARRSHLSESCSIESDIYAEIPDET 392
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 15/92 (16%)
Query: 292 PTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQ 351
P SL +LD+ NNQL +P+ L + D+N LT LP L +LE+L
Sbjct: 119 PASLKHLDVDNNQLTXLPEL---PALLEYINADNNQLT-XLPEL--------PTSLEVLS 166
Query: 352 LNSNMLRGSLPDITLFSSLKELHLYDNMLDVL 383
+ +N L LP+ L SL+ L + N+L+ L
Sbjct: 167 VRNNQL-TFLPE--LPESLEALDVSTNLLESL 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,895,795
Number of Sequences: 62578
Number of extensions: 928011
Number of successful extensions: 2866
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 1979
Number of HSP's gapped (non-prelim): 546
length of query: 820
length of database: 14,973,337
effective HSP length: 107
effective length of query: 713
effective length of database: 8,277,491
effective search space: 5901851083
effective search space used: 5901851083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)