Query 045139
Match_columns 820
No_of_seqs 745 out of 4276
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1E-67 2.2E-72 648.8 47.0 576 42-815 27-605 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.8E-56 1.7E-60 543.6 38.4 515 216-820 70-587 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 4.5E-42 9.8E-47 340.9 -16.9 488 191-793 47-541 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 1.2E-40 2.5E-45 330.9 -15.7 262 91-439 48-309 (565)
5 KOG4194 Membrane glycoprotein 100.0 4.6E-36 1E-40 311.0 7.3 365 269-700 79-447 (873)
6 KOG4194 Membrane glycoprotein 100.0 3.5E-35 7.7E-40 304.5 7.8 364 318-814 80-449 (873)
7 KOG0618 Serine/threonine phosp 100.0 3.9E-36 8.4E-41 328.2 -5.8 505 120-815 3-511 (1081)
8 KOG0618 Serine/threonine phosp 100.0 6.9E-35 1.5E-39 318.4 -7.1 465 114-702 44-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.3E-33 2.9E-38 294.2 -2.3 130 269-439 8-138 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2.7E-33 5.9E-38 291.9 -2.6 370 112-681 4-375 (1255)
11 KOG4237 Extracellular matrix p 99.9 6.7E-25 1.5E-29 218.9 -1.9 52 759-814 446-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 2.8E-21 6.1E-26 237.8 26.1 347 310-703 552-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 4.1E-21 8.9E-26 236.4 26.4 331 332-718 550-895 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 2.4E-21 5.1E-26 220.7 17.6 258 477-819 203-460 (788)
15 KOG4237 Extracellular matrix p 99.9 1E-23 2.3E-28 210.4 -3.9 390 268-718 67-490 (498)
16 PRK15387 E3 ubiquitin-protein 99.8 1.9E-20 4E-25 213.4 17.2 279 336-718 192-471 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 5.5E-19 1.2E-23 203.0 11.9 120 572-705 305-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.6E-18 3.5E-23 199.3 13.3 245 475-817 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.4E-18 3.1E-23 186.2 -0.5 283 455-816 2-319 (319)
20 KOG0617 Ras suppressor protein 99.7 6.6E-19 1.4E-23 156.3 -4.0 180 572-799 34-218 (264)
21 KOG0617 Ras suppressor protein 99.7 9.6E-19 2.1E-23 155.2 -4.3 166 590-803 28-195 (264)
22 cd00116 LRR_RI Leucine-rich re 99.7 5.7E-18 1.2E-22 181.5 -0.4 209 572-818 52-292 (319)
23 PLN03150 hypothetical protein; 99.5 6.2E-14 1.3E-18 161.3 13.3 125 40-174 368-500 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 1.7E-14 3.6E-19 151.6 -4.9 176 573-800 77-253 (722)
25 KOG0532 Leucine-rich repeat (L 99.4 2.4E-14 5.1E-19 150.5 -4.2 177 592-819 72-249 (722)
26 COG4886 Leucine-rich repeat (L 99.3 1.9E-12 4E-17 142.9 7.4 192 575-817 97-290 (394)
27 COG4886 Leucine-rich repeat (L 99.2 1.1E-11 2.4E-16 136.7 7.4 179 572-799 117-296 (394)
28 KOG1259 Nischarin, modulator o 99.2 4.8E-12 1E-16 122.8 0.7 135 638-819 279-414 (490)
29 KOG3207 Beta-tubulin folding c 99.1 1.5E-11 3.4E-16 125.8 1.7 193 162-358 119-314 (505)
30 PLN03150 hypothetical protein; 99.1 1E-10 2.2E-15 134.8 8.6 112 572-683 419-530 (623)
31 KOG3207 Beta-tubulin folding c 99.1 2.7E-11 5.8E-16 124.1 2.8 218 212-441 118-340 (505)
32 KOG1259 Nischarin, modulator o 99.0 1.1E-10 2.4E-15 113.6 0.7 59 269-330 285-343 (490)
33 KOG1909 Ran GTPase-activating 99.0 1.1E-10 2.4E-15 116.6 0.3 256 109-414 24-310 (382)
34 PF14580 LRR_9: Leucine-rich r 98.9 7.7E-10 1.7E-14 104.1 5.1 120 572-698 20-146 (175)
35 KOG4658 Apoptotic ATPase [Sign 98.9 4.8E-10 1E-14 131.8 4.2 129 89-223 546-676 (889)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.3E-09 2.9E-14 102.6 6.1 105 244-358 20-126 (175)
37 KOG1909 Ran GTPase-activating 98.9 4.5E-10 9.8E-15 112.3 1.7 139 290-439 154-310 (382)
38 KOG0531 Protein phosphatase 1, 98.9 3.2E-10 6.9E-15 125.2 -0.3 214 572-817 73-290 (414)
39 PF13855 LRR_8: Leucine rich r 98.7 6E-09 1.3E-13 80.5 2.9 60 757-816 1-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.7 1.3E-08 2.7E-13 78.7 4.1 58 597-654 3-60 (61)
41 PF08263 LRRNT_2: Leucine rich 98.7 2.9E-08 6.3E-13 69.9 4.4 41 43-84 2-43 (43)
42 KOG0531 Protein phosphatase 1, 98.7 4E-09 8.7E-14 116.4 -0.2 199 113-331 70-270 (414)
43 KOG1859 Leucine-rich repeat pr 98.6 1.8E-09 3.9E-14 117.2 -6.2 179 588-818 102-293 (1096)
44 KOG2982 Uncharacterized conser 98.5 3.3E-08 7.2E-13 96.6 2.1 195 187-441 69-263 (418)
45 KOG4658 Apoptotic ATPase [Sign 98.4 2.6E-07 5.7E-12 109.0 7.3 108 243-356 545-653 (889)
46 KOG2120 SCF ubiquitin ligase, 98.4 9.7E-09 2.1E-13 100.3 -5.6 182 116-326 186-373 (419)
47 KOG4579 Leucine-rich repeat (L 98.4 2.9E-08 6.2E-13 85.9 -2.5 73 643-718 53-125 (177)
48 KOG1859 Leucine-rich repeat pr 98.3 4.1E-08 8.9E-13 106.9 -4.8 179 236-440 103-292 (1096)
49 KOG2120 SCF ubiquitin ligase, 98.2 4.9E-08 1.1E-12 95.5 -4.8 179 243-437 185-373 (419)
50 KOG2982 Uncharacterized conser 98.1 2.7E-07 5.9E-12 90.4 -1.5 193 112-331 68-264 (418)
51 KOG4579 Leucine-rich repeat (L 98.1 1.5E-07 3.2E-12 81.7 -4.3 135 572-712 28-166 (177)
52 COG5238 RNA1 Ran GTPase-activa 98.0 1.4E-06 3E-11 84.5 0.5 204 136-358 26-255 (388)
53 KOG4341 F-box protein containi 97.9 3.8E-07 8.3E-12 93.7 -4.7 85 243-327 294-383 (483)
54 PF12799 LRR_4: Leucine Rich r 97.9 1.7E-05 3.7E-10 55.9 4.0 38 293-330 1-38 (44)
55 PF12799 LRR_4: Leucine Rich r 97.9 9.9E-06 2.2E-10 57.1 2.5 35 758-793 2-37 (44)
56 KOG3665 ZYG-1-like serine/thre 97.9 5.4E-06 1.2E-10 95.6 1.8 158 115-276 122-283 (699)
57 COG5238 RNA1 Ran GTPase-activa 97.7 2.4E-05 5.2E-10 76.1 3.5 140 188-329 29-198 (388)
58 KOG4341 F-box protein containi 97.7 2.9E-06 6.2E-11 87.5 -2.9 264 207-485 156-436 (483)
59 PRK15386 type III secretion pr 97.6 0.00024 5.1E-09 75.6 9.2 115 572-705 53-169 (426)
60 PRK15386 type III secretion pr 97.6 0.00019 4.1E-09 76.3 8.0 76 591-680 48-124 (426)
61 KOG3665 ZYG-1-like serine/thre 97.5 3.4E-05 7.4E-10 89.1 2.1 160 243-435 122-283 (699)
62 KOG1644 U2-associated snRNP A' 97.5 0.00018 3.8E-09 67.4 6.1 80 295-380 44-125 (233)
63 KOG1644 U2-associated snRNP A' 97.3 0.00027 6E-09 66.1 4.2 85 116-203 43-127 (233)
64 KOG2739 Leucine-rich acidic nu 97.2 0.00021 4.6E-09 69.9 3.1 113 107-222 35-150 (260)
65 PF13306 LRR_5: Leucine rich r 96.8 0.0053 1.2E-07 55.5 7.9 123 589-718 6-128 (129)
66 KOG2123 Uncharacterized conser 96.7 9.2E-05 2E-09 72.4 -4.4 103 114-221 18-123 (388)
67 KOG2739 Leucine-rich acidic nu 96.5 0.0017 3.6E-08 63.8 2.5 77 243-322 65-149 (260)
68 KOG2123 Uncharacterized conser 96.5 0.0001 2.2E-09 72.1 -5.7 57 572-632 20-76 (388)
69 PF13306 LRR_5: Leucine rich r 96.4 0.0085 1.8E-07 54.1 6.7 117 572-695 13-129 (129)
70 KOG1947 Leucine rich repeat pr 95.9 0.0019 4.1E-08 73.5 -0.4 137 187-323 186-328 (482)
71 PF00560 LRR_1: Leucine Rich R 95.5 0.0045 9.7E-08 36.2 0.3 20 782-802 2-21 (22)
72 PF00560 LRR_1: Leucine Rich R 95.1 0.0073 1.6E-07 35.3 0.4 17 270-287 2-18 (22)
73 KOG4308 LRR-containing protein 94.7 0.00054 1.2E-08 75.9 -9.3 23 394-416 282-304 (478)
74 KOG1947 Leucine rich repeat pr 94.5 0.013 2.7E-07 66.7 0.6 115 113-228 186-308 (482)
75 PF13504 LRR_7: Leucine rich r 92.5 0.088 1.9E-06 28.5 1.5 14 295-308 3-16 (17)
76 KOG0473 Leucine-rich repeat pr 91.4 0.0089 1.9E-07 57.4 -5.3 56 760-817 68-124 (326)
77 PF13504 LRR_7: Leucine rich r 90.5 0.17 3.6E-06 27.4 1.3 13 644-656 2-14 (17)
78 KOG4308 LRR-containing protein 88.6 0.0089 1.9E-07 66.4 -9.2 37 270-306 89-128 (478)
79 smart00370 LRR Leucine-rich re 87.9 0.44 9.6E-06 29.0 2.1 20 643-663 2-21 (26)
80 smart00369 LRR_TYP Leucine-ric 87.9 0.44 9.6E-06 29.0 2.1 20 643-663 2-21 (26)
81 smart00369 LRR_TYP Leucine-ric 87.6 0.56 1.2E-05 28.5 2.3 19 293-311 2-20 (26)
82 smart00370 LRR Leucine-rich re 87.6 0.56 1.2E-05 28.5 2.3 19 293-311 2-20 (26)
83 KOG0473 Leucine-rich repeat pr 86.9 0.023 4.9E-07 54.7 -6.1 83 619-705 42-124 (326)
84 PF13516 LRR_6: Leucine Rich r 82.5 0.44 9.6E-06 28.3 0.2 16 643-658 2-17 (24)
85 KOG3864 Uncharacterized conser 80.9 0.36 7.7E-06 45.9 -1.0 81 117-198 103-185 (221)
86 KOG3864 Uncharacterized conser 75.9 0.45 9.8E-06 45.3 -1.8 81 621-701 103-185 (221)
87 smart00365 LRR_SD22 Leucine-ri 74.9 2.5 5.4E-05 25.8 1.8 13 804-816 2-14 (26)
88 smart00364 LRR_BAC Leucine-ric 69.8 3.2 7E-05 25.2 1.4 17 294-310 3-19 (26)
89 smart00368 LRR_RI Leucine rich 66.8 4.5 9.7E-05 25.1 1.7 14 804-817 2-15 (28)
90 KOG4242 Predicted myosin-I-bin 49.3 86 0.0019 34.4 8.6 113 314-439 163-280 (553)
91 KOG3763 mRNA export factor TAP 45.4 14 0.0003 41.1 2.1 15 346-360 271-285 (585)
92 smart00367 LRR_CC Leucine-rich 44.1 14 0.0003 22.3 1.2 11 164-174 2-12 (26)
93 KOG3763 mRNA export factor TAP 43.2 17 0.00037 40.3 2.5 37 189-225 218-254 (585)
94 KOG4242 Predicted myosin-I-bin 34.9 2.4E+02 0.0052 31.2 9.2 17 245-261 216-232 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-67 Score=648.77 Aligned_cols=576 Identities=33% Similarity=0.516 Sum_probs=411.7
Q ss_pred CHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCcccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEE
Q 045139 42 IERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLN 121 (820)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~ 121 (820)
.++|++||++||+++.+|.+.+.+|. .+.+||.|.||+|++ .++|+.|+|++ +.++|.+++++..+++|++|+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~---~~i~~~~~~~~~~l~~L~~L~ 99 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG---KNISGKISSAIFRLPYIQTIN 99 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC---CCccccCChHHhCCCCCCEEE
Confidence 44789999999999988888889997 467899999999975 57999999998 889999999999999999999
Q ss_pred CcCCCCCCcccCcccc-CCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCcc
Q 045139 122 MKYNDFGGKQIPAFIG-SLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVN 200 (820)
Q Consensus 122 Ls~n~l~~~~~p~~i~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~ 200 (820)
|++|.+.+. +|..+. .+++|++|+|++|.+++.+|. +.+++|++|++++| .
T Consensus 100 Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n-------------------------~ 151 (968)
T PLN00113 100 LSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN-------------------------M 151 (968)
T ss_pred CCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCC-------------------------c
Confidence 999999885 887765 899999999999999988884 45666777777666 3
Q ss_pred CCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcc
Q 045139 201 LGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKL 280 (820)
Q Consensus 201 l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l 280 (820)
+.+ .+|..++++++|++|++++|.+.+..| ..+.++ ++|++|++++|.+++.+|..+..+. +|++|++++|.+
T Consensus 152 ~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l 224 (968)
T PLN00113 152 LSG--EIPNDIGSFSSLKVLDLGGNVLVGKIP---NSLTNL-TSLEFLTLASNQLVGQIPRELGQMK-SLKWIYLGYNNL 224 (968)
T ss_pred ccc--cCChHHhcCCCCCEEECccCcccccCC---hhhhhC-cCCCeeeccCCCCcCcCChHHcCcC-CccEEECcCCcc
Confidence 322 244556666666666666666666555 344444 5555555555555555555554444 555555555555
Q ss_pred cCCCCCCCCCCCCCCCEEECCCCCCC-CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcc
Q 045139 281 QGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRG 359 (820)
Q Consensus 281 ~g~ip~~~l~~l~~L~~L~Ls~n~l~-~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~ 359 (820)
++.+|.. ++++++|++|++++|.++ .+|..++++++|++|++++|++++..|..+..+. +|+.|++++|.+.
T Consensus 225 ~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-----~L~~L~Ls~n~l~- 297 (968)
T PLN00113 225 SGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ-----KLISLDLSDNSLS- 297 (968)
T ss_pred CCcCChh-HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc-----CcCEEECcCCeec-
Confidence 5555544 455555555555555544 4444455555555555555555444444444444 4444444444443
Q ss_pred cCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCcc
Q 045139 360 SLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439 (820)
Q Consensus 360 ~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l 439 (820)
+.+|..+.++++|+.|++++|.+.+.+|. .+..+++|+.|++++|.+
T Consensus 298 --------------------------------~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 298 --------------------------------GEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred --------------------------------cCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcCCCCCEEECcCCCC
Confidence 34444445555555555555555554444 345555555555555444
Q ss_pred ccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcc
Q 045139 440 ILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDL 519 (820)
Q Consensus 440 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~ 519 (820)
. +.+|.++..+++|+.|++++|++.+.+|.++... ++|+.|++++|++.+.+|..
T Consensus 345 ~------------------------~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 345 S------------------------GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred c------------------------CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHH
Confidence 3 2334444555555555555555555555555443 45666666666555554442
Q ss_pred cccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcE
Q 045139 520 SQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTV 599 (820)
Q Consensus 520 ~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 599 (820)
+.. +. +|+.|++++|++++.+|..+..++.|+.
T Consensus 400 ~~~-------------------------~~----------------------~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 432 (968)
T PLN00113 400 LGA-------------------------CR----------------------SLRRVRLQDNSFSGELPSEFTKLPLVYF 432 (968)
T ss_pred HhC-------------------------CC----------------------CCCEEECcCCEeeeECChhHhcCCCCCE
Confidence 221 11 6788889999998889999999999999
Q ss_pred EEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCccc
Q 045139 600 LNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNN 679 (820)
Q Consensus 600 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~ 679 (820)
|++++|++++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+. .+++|+.|++++|+
T Consensus 433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~ 510 (968)
T PLN00113 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENK 510 (968)
T ss_pred EECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhh-hhhccCEEECcCCc
Confidence 9999999999888888889999999999999998888765 458899999999999999998887 78999999999999
Q ss_pred ccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCce
Q 045139 680 FHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLV 759 (820)
Q Consensus 680 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 759 (820)
+.+.+|..+..+++|++|++++|+++|.+|..+.+++.|
T Consensus 511 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L----------------------------------------- 549 (968)
T PLN00113 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL----------------------------------------- 549 (968)
T ss_pred ceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccC-----------------------------------------
Confidence 999999999999999999999999999999988888777
Q ss_pred EEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCc
Q 045139 760 KSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNM 815 (820)
Q Consensus 760 ~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~ 815 (820)
+.|||++|+++|.+| .+..+++|+.|++++|+++|.+|.. +.+..+....+.+|+
T Consensus 550 ~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred CEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 889999999999999 8889999999999999999999864 445556666667776
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.8e-56 Score=543.62 Aligned_cols=515 Identities=31% Similarity=0.465 Sum_probs=380.1
Q ss_pred CCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCC
Q 045139 216 SLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSL 295 (820)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L 295 (820)
+++.|++++|.+++.++ ..+..+ ++|++|++++|.+++.+|..++...++|++|++++|.++|.+|. +.+++|
T Consensus 70 ~v~~L~L~~~~i~~~~~---~~~~~l-~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L 142 (968)
T PLN00113 70 RVVSIDLSGKNISGKIS---SAIFRL-PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNL 142 (968)
T ss_pred cEEEEEecCCCccccCC---hHHhCC-CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCC
Confidence 34455555555554444 333444 55555555555555555555543333555555555555555553 234555
Q ss_pred CEEECCCCCCC-CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCC-CcCcCCCcEE
Q 045139 296 SYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKEL 373 (820)
Q Consensus 296 ~~L~Ls~n~l~-~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L 373 (820)
++|++++|.++ .+|..++++++|++|++++|.+.+..|..+.+++ +|++|++++|.+.+.+|. ++.+++|+.|
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT-----SLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCc-----CCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 55555555555 4555555555555555555555555555555555 555555555555555554 5555555544
Q ss_pred ecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCcccc
Q 045139 374 HLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFEL 453 (820)
Q Consensus 374 ~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L 453 (820)
++++|.+++.+|..++++++|++|++++|.+++.+|. .++++++|++|++++|.+.+..|..+....+|
T Consensus 218 ----------~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 286 (968)
T PLN00113 218 ----------YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286 (968)
T ss_pred ----------ECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence 2334444555555556666666666666666555554 45566666666666666555555555555555
Q ss_pred ceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceecc
Q 045139 454 NIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLS 533 (820)
Q Consensus 454 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls 533 (820)
+.|++++|.+.+.+|.++..+++|+.|++++|.+.+.+|.++..+ ++|+.|++++|.+.+.+|..+.....+ +.++++
T Consensus 287 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L-~~L~Ls 364 (968)
T PLN00113 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNL-TVLDLS 364 (968)
T ss_pred CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHHhCCCCC-cEEECC
Confidence 566666666666677777777777777777777777777766554 577777777777777777666666666 777777
Q ss_pred CCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCC
Q 045139 534 ANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPD 613 (820)
Q Consensus 534 ~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 613 (820)
+|++++.+|..+..+. +++.|++++|++.+.+|..+..+++|+.|++++|++++.+|.
T Consensus 365 ~n~l~~~~p~~~~~~~----------------------~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~ 422 (968)
T PLN00113 365 TNNLTGEIPEGLCSSG----------------------NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422 (968)
T ss_pred CCeeEeeCChhHhCcC----------------------CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence 7777776665443332 789999999999999999999999999999999999999999
Q ss_pred CcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCC
Q 045139 614 SMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQR 693 (820)
Q Consensus 614 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 693 (820)
.+..++.|+.|++++|.+++.+|..+..+++|++|++++|++.+.+|..+. .++|+.|++++|++++.+|..+..+++
T Consensus 423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~~~L~~L~ls~n~l~~~~~~~~~~l~~ 500 (968)
T PLN00113 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSLSE 500 (968)
T ss_pred hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--cccceEEECcCCccCCccChhhhhhhc
Confidence 999999999999999999999999999999999999999999999998764 789999999999999999999999999
Q ss_pred CCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecC
Q 045139 694 IQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEI 773 (820)
Q Consensus 694 L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~i 773 (820)
|+.|++++|++.+.+|..+.++++| ++|||++|+++|.+
T Consensus 501 L~~L~Ls~N~l~~~~p~~~~~l~~L-----------------------------------------~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 501 LMQLKLSENKLSGEIPDELSSCKKL-----------------------------------------VSLDLSHNQLSGQI 539 (968)
T ss_pred cCEEECcCCcceeeCChHHcCccCC-----------------------------------------CEEECCCCcccccC
Confidence 9999999999999999999988888 89999999999999
Q ss_pred C-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCcccC
Q 045139 774 P-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMRAT 820 (820)
Q Consensus 774 p-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g~i 820 (820)
| .+..+++|+.|+|++|+++|.+|..+.++++|+.||+++|+++|.|
T Consensus 540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence 9 9999999999999999999999999999999999999999999865
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.5e-42 Score=340.88 Aligned_cols=488 Identities=28% Similarity=0.355 Sum_probs=345.5
Q ss_pred CCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCC
Q 045139 191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL 270 (820)
Q Consensus 191 L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 270 (820)
|+.+.+++|.+.. +...+.++..|.+|++.+|.+...+| +++++ ..++.++.+.|++. .+|+.+.... ++
T Consensus 47 l~~lils~N~l~~---l~~dl~nL~~l~vl~~~~n~l~~lp~----aig~l-~~l~~l~vs~n~ls-~lp~~i~s~~-~l 116 (565)
T KOG0472|consen 47 LQKLILSHNDLEV---LREDLKNLACLTVLNVHDNKLSQLPA----AIGEL-EALKSLNVSHNKLS-ELPEQIGSLI-SL 116 (565)
T ss_pred hhhhhhccCchhh---ccHhhhcccceeEEEeccchhhhCCH----HHHHH-HHHHHhhcccchHh-hccHHHhhhh-hh
Confidence 3444444444443 33456777888888888888776655 56666 77888888888887 6788888887 89
Q ss_pred cEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEE
Q 045139 271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350 (820)
Q Consensus 271 ~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L 350 (820)
++++.++|.+. ++|++ ++.+..|+.++..+|+++++|+.++++.+|..+++.+|++....|..+. ++ .|+++
T Consensus 117 ~~l~~s~n~~~-el~~~-i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~-----~L~~l 188 (565)
T KOG0472|consen 117 VKLDCSSNELK-ELPDS-IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MK-----RLKHL 188 (565)
T ss_pred hhhhcccccee-ecCch-HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HH-----HHHhc
Confidence 99999999998 78888 8889999999999999999999999999999999999999988777666 77 89999
Q ss_pred EcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCC
Q 045139 351 QLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLT 430 (820)
Q Consensus 351 ~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 430 (820)
|...|-+....|.++.+.+|+-|++..|+++ .+| .|.+|..|+++.++.|+|.- +|++...+++++.
T Consensus 189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-----------~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~ 255 (565)
T KOG0472|consen 189 DCNSNLLETLPPELGGLESLELLYLRRNKIR-----------FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLL 255 (565)
T ss_pred ccchhhhhcCChhhcchhhhHHHHhhhcccc-----------cCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccce
Confidence 9999988865555999999988877666655 556 78999999999999999874 7887888999999
Q ss_pred EEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCC
Q 045139 431 YLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHN 510 (820)
Q Consensus 431 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n 510 (820)
.||+.+|+++ +.|+.+.-+++|++||+++|.|++ .|..++.+ .|+.|.+.+|
T Consensus 256 vLDLRdNklk-------------------------e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl--hL~~L~leGN 307 (565)
T KOG0472|consen 256 VLDLRDNKLK-------------------------EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL--HLKFLALEGN 307 (565)
T ss_pred eeeccccccc-------------------------cCchHHHHhhhhhhhcccCCcccc-CCcccccc--eeeehhhcCC
Confidence 9999999984 678888888889999999998864 55566665 7888888888
Q ss_pred cCCCCCCcccccccC-CCCcee--ccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCcccccc
Q 045139 511 HFTGMLPDLSQKFTA-YPPEID--LSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGEL 587 (820)
Q Consensus 511 ~l~~~~p~~~~~~~~-l~~~l~--ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 587 (820)
++..+-.+.+...+. .++++. +..-.++.. .-+.-...+.. .+..|.... ..+.+.|++++-+++ .+
T Consensus 308 PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s---e~~~e~~~t~~----~~~~~~~~~--~i~tkiL~~s~~qlt-~V 377 (565)
T KOG0472|consen 308 PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS---EGGTETAMTLP----SESFPDIYA--IITTKILDVSDKQLT-LV 377 (565)
T ss_pred chHHHHHHHHcccHHHHHHHHHHhhccCCCCCC---cccccccCCCC----CCcccchhh--hhhhhhhcccccccc-cC
Confidence 875332221111110 001110 000000000 00000000000 000111000 016788888888887 56
Q ss_pred CcccccCCC---CcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchh
Q 045139 588 PNCSKNWQK---LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIG 664 (820)
Q Consensus 588 p~~~~~l~~---L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 664 (820)
|+....... .+..++++|++. .+|..+..+..+.+.-+.+|+..+-+|..+..+++|..|+|++|.+. .+|.+++
T Consensus 378 PdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~ 455 (565)
T KOG0472|consen 378 PDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMG 455 (565)
T ss_pred CHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhh
Confidence 665444433 778888888887 67877777766665444444444567777788888888888888776 6777777
Q ss_pred cCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEE
Q 045139 665 DSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLV 744 (820)
Q Consensus 665 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (820)
.+..|+.|++++|+|. .+|..+..+..++.+-.++|++...-|+.+.++..|
T Consensus 456 -~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL-------------------------- 507 (565)
T KOG0472|consen 456 -SLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL-------------------------- 507 (565)
T ss_pred -hhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc--------------------------
Confidence 5777888888888777 677777777777777677777764444446666665
Q ss_pred eeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccc
Q 045139 745 WKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT 793 (820)
Q Consensus 745 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~ 793 (820)
++|||.+|.+. .|| .+++|++|++|++++|.++
T Consensus 508 ---------------~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 508 ---------------TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ---------------ceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 77888888887 555 7888888888888888777
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-40 Score=330.88 Aligned_cols=262 Identities=29% Similarity=0.398 Sum_probs=145.3
Q ss_pred EEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEe
Q 045139 91 TMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLD 170 (820)
Q Consensus 91 ~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 170 (820)
..+.+++ +.+. .+.+.+.++..|.+|++++|++.. +|++++.+..++.|+.++|+++ ++|+.++.+.+|++|+
T Consensus 48 ~~lils~---N~l~-~l~~dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 48 QKLILSH---NDLE-VLREDLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhhhcc---Cchh-hccHhhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 3445554 3333 344566677777777777777654 6777777777777777777777 6777777777777777
Q ss_pred CCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEEC
Q 045139 171 LSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDL 250 (820)
Q Consensus 171 Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L 250 (820)
.++| .+.. ++..++.+..|+.++..+|+++..++ .+..+ .++..+++
T Consensus 121 ~s~n-------------------------~~~e---l~~~i~~~~~l~dl~~~~N~i~slp~----~~~~~-~~l~~l~~ 167 (565)
T KOG0472|consen 121 CSSN-------------------------ELKE---LPDSIGRLLDLEDLDATNNQISSLPE----DMVNL-SKLSKLDL 167 (565)
T ss_pred cccc-------------------------ceee---cCchHHHHhhhhhhhccccccccCch----HHHHH-HHHHHhhc
Confidence 7666 2221 33444455555555555555544433 23333 44555555
Q ss_pred cCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCC
Q 045139 251 SLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTD 330 (820)
Q Consensus 251 s~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~ 330 (820)
.+|++....|. ...+. .|++||...|.++ .+|++ ++.+.+|+.|++..|++..+| +|+++..|++++++.|+|.-
T Consensus 168 ~~n~l~~l~~~-~i~m~-~L~~ld~~~N~L~-tlP~~-lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~ 242 (565)
T KOG0472|consen 168 EGNKLKALPEN-HIAMK-RLKHLDCNSNLLE-TLPPE-LGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEM 242 (565)
T ss_pred cccchhhCCHH-HHHHH-HHHhcccchhhhh-cCChh-hcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHh
Confidence 55555432222 22233 5566666555555 55555 556666666666666666555 45555555555555555554
Q ss_pred cchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecC
Q 045139 331 LLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVA 410 (820)
Q Consensus 331 ~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 410 (820)
...+...++. ++.+|||..|++. ..|+.+.-+++|++||++
T Consensus 243 lpae~~~~L~-----~l~vLDLRdNklk----------------------------------e~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 243 LPAEHLKHLN-----SLLVLDLRDNKLK----------------------------------EVPDEICLLRSLERLDLS 283 (565)
T ss_pred hHHHHhcccc-----cceeeeccccccc----------------------------------cCchHHHHhhhhhhhccc
Confidence 3333333444 4444444444444 445555555566666666
Q ss_pred CCcCccccCHHHhhcCCCCCEEeCcCCcc
Q 045139 411 SNSLKGMITEAHLSNLSRLTYLDLSHNSL 439 (820)
Q Consensus 411 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l 439 (820)
+|.|++ .|. .++++ .|+.|.+.+|++
T Consensus 284 NN~is~-Lp~-sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 284 NNDISS-LPY-SLGNL-HLKFLALEGNPL 309 (565)
T ss_pred CCcccc-CCc-ccccc-eeeehhhcCCch
Confidence 666655 333 35666 666666666655
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-36 Score=311.00 Aligned_cols=365 Identities=22% Similarity=0.244 Sum_probs=242.3
Q ss_pred CCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCcc
Q 045139 269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLE 348 (820)
Q Consensus 269 ~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~ 348 (820)
.-+.||+++|.+. .+....|.++++|+++++.+|.++.||...+...+|+.|+|.+|.|+.+..+.+..++ .|+
T Consensus 79 ~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-----alr 152 (873)
T KOG4194|consen 79 QTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-----ALR 152 (873)
T ss_pred ceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHh-----hhh
Confidence 4466777777777 4544447777788888888887777777655566688888888888777777777777 788
Q ss_pred EEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCC
Q 045139 349 ILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLS 427 (820)
Q Consensus 349 ~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 427 (820)
.|||+.|.++..... +..-.++++|+ |++|+|+..-...|..+.+|..|.|+.|+++. +|...|.+++
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~----------La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~ 221 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLN----------LASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLP 221 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEe----------eccccccccccccccccchheeeecccCcccc-cCHHHhhhcc
Confidence 888888877743322 54445566554 44555555555677777888888888888876 5666788888
Q ss_pred CCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEc
Q 045139 428 RLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNL 507 (820)
Q Consensus 428 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l 507 (820)
+|+.|+|..|++...-...|.++.+|+.+.+..|.+...-...|..+.++++|+++.|+++..-..|++++ ..|+.|++
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~l 300 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDL 300 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc-chhhhhcc
Confidence 88888888888866656667777777777777777776666777788888888888888877777777775 57888888
Q ss_pred CCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCcccccc
Q 045139 508 SHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGEL 587 (820)
Q Consensus 508 s~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 587 (820)
++|.|..+-++.+.... +|++|+|++|+++...
T Consensus 301 S~NaI~rih~d~Wsftq-----------------------------------------------kL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 301 SYNAIQRIHIDSWSFTQ-----------------------------------------------KLKELDLSSNRITRLD 333 (873)
T ss_pred chhhhheeecchhhhcc-----------------------------------------------cceeEeccccccccCC
Confidence 88877765555433333 4555566666655555
Q ss_pred CcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCc---chhcCCCCCEEECCCCcCccccCcchh
Q 045139 588 PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPS---SVKSFTQLTVLDLGHNKISGIIPAWIG 664 (820)
Q Consensus 588 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 664 (820)
+..|..+..|++|+|++|++...-..+|..+++|++|||++|.++..+.+ .|.++++|+.|++.+|++. .||.--+
T Consensus 334 ~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAf 412 (873)
T KOG4194|consen 334 EGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAF 412 (873)
T ss_pred hhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhh
Confidence 55555566666666666665544445555566666666666665544432 3445566666666666665 4443333
Q ss_pred cCCCCccEEEcCcccccccCCcccCCCCCCCEEeCc
Q 045139 665 DSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLS 700 (820)
Q Consensus 665 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 700 (820)
.+++.|+.|+|.+|.+..+-|.+|..+ .|++|-+.
T Consensus 413 sgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 413 SGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 356666666666666665556666555 55555443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-35 Score=304.46 Aligned_cols=364 Identities=22% Similarity=0.271 Sum_probs=263.1
Q ss_pred CcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcC-CCcEEecCCCcccEEEccCCcccccccc
Q 045139 318 LRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFS-SLKELHLYDNMLDVLYLNNNRFTGTLTK 396 (820)
Q Consensus 318 L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~-~L~~L~l~~n~L~~L~L~~n~l~~~~~~ 396 (820)
-+.|++++|++..+.+..|.+++ +|+.+++.+|.++ .+|.++... +|+.|+ |.+|.|+..-.+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~-----nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~----------L~~N~I~sv~se 143 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLP-----NLQEVNLNKNELT-RIPRFGHESGHLEKLD----------LRHNLISSVTSE 143 (873)
T ss_pred eeeeeccccccccCcHHHHhcCC-----cceeeeeccchhh-hcccccccccceeEEe----------eeccccccccHH
Confidence 34567777777776666666666 6777777666666 444433222 244332 333333333444
Q ss_pred cccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCC
Q 045139 397 SIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNK 476 (820)
Q Consensus 397 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 476 (820)
.+..++.|+.|||+.|.|+. ++...|..-.++++|+|++|.|+ ..-...|..+.+
T Consensus 144 ~L~~l~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It------------------------~l~~~~F~~lns 198 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRIT------------------------TLETGHFDSLNS 198 (873)
T ss_pred HHHhHhhhhhhhhhhchhhc-ccCCCCCCCCCceEEeecccccc------------------------ccccccccccch
Confidence 55555666666666666654 34334555555666666666554 334445666667
Q ss_pred ccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCc
Q 045139 477 FSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKN 556 (820)
Q Consensus 477 L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n 556 (820)
|..|.++.|+++. +|...+..+++|+.|+|..|++.-.---.|. .+
T Consensus 199 L~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~irive~ltFq-------------------------gL-------- 244 (873)
T KOG4194|consen 199 LLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ-------------------------GL-------- 244 (873)
T ss_pred heeeecccCcccc-cCHHHhhhcchhhhhhccccceeeehhhhhc-------------------------Cc--------
Confidence 7777777777754 3443444346777777777766421100000 11
Q ss_pred ccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCC
Q 045139 557 MFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP 636 (820)
Q Consensus 557 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 636 (820)
.+|+.|.+..|.+...-...|..|.++++|+|+.|++...-..++-++++|+.|++|.|.|..+.+
T Consensus 245 --------------~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 245 --------------PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred --------------hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 167888888888887777889999999999999999998778888999999999999999999999
Q ss_pred cchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchh---cc
Q 045139 637 SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC---LN 713 (820)
Q Consensus 637 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~ 713 (820)
++++.+++|++|||++|+|+..-+..+. .+..|++|+|++|.+...-...|..+++|++|||++|.+++.|.+. |.
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~-~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFR-VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHH-HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 9999999999999999999965556665 7999999999999998777778889999999999999999877652 33
Q ss_pred ccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC--CcccccCCCEEeCCCCc
Q 045139 714 NLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP--EVTSLVGLISLNLSKNS 791 (820)
Q Consensus 714 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip--~l~~l~~L~~L~Ls~N~ 791 (820)
++ ++|+.|+|.+|++. .|| .|..+.+|++|||.+|.
T Consensus 390 gl-----------------------------------------~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 390 GL-----------------------------------------PSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cc-----------------------------------------hhhhheeecCceee-ecchhhhccCcccceecCCCCc
Confidence 33 44589999999998 777 89999999999999999
Q ss_pred cccCCcccccCCCCCCeEeCCCC
Q 045139 792 LTGPIPSKIGGLTLLNSLDLSKN 814 (820)
Q Consensus 792 l~~~ip~~l~~l~~L~~LdLs~N 814 (820)
|...-|++|..+ .|+.|-+..-
T Consensus 428 iaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 428 IASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred ceeecccccccc-hhhhhhhccc
Confidence 999999999998 8888876543
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-36 Score=328.19 Aligned_cols=505 Identities=26% Similarity=0.315 Sum_probs=295.1
Q ss_pred EECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCc
Q 045139 120 LNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQV 199 (820)
Q Consensus 120 L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n 199 (820)
+|++...+.- ||..+-.-..++.|+++.|.+....-+.+.+..+|+.||+++|
T Consensus 3 vd~s~~~l~~--ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn------------------------- 55 (1081)
T KOG0618|consen 3 VDASDEQLEL--IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN------------------------- 55 (1081)
T ss_pred cccccccCcc--cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeecccc-------------------------
Confidence 3445444432 5555444444556666655544211122333333455555444
Q ss_pred cCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCc
Q 045139 200 NLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNK 279 (820)
Q Consensus 200 ~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 279 (820)
.++. +|..+..+.+|+.|.++.|.+...+ ....++ ++|+++.|.+|.+. ..|..+.... +|++|+++.|.
T Consensus 56 ~~~~---fp~~it~l~~L~~ln~s~n~i~~vp----~s~~~~-~~l~~lnL~~n~l~-~lP~~~~~lk-nl~~LdlS~N~ 125 (1081)
T KOG0618|consen 56 QISS---FPIQITLLSHLRQLNLSRNYIRSVP----SSCSNM-RNLQYLNLKNNRLQ-SLPASISELK-NLQYLDLSFNH 125 (1081)
T ss_pred cccc---CCchhhhHHHHhhcccchhhHhhCc----hhhhhh-hcchhheeccchhh-cCchhHHhhh-cccccccchhc
Confidence 4433 3444555555555555555544332 123333 45555555554443 4444444444 55555555555
Q ss_pred ccCCCCCCCCCCCCCCCEEECCCC-CCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCc
Q 045139 280 LQGPIPDSAFPNPTSLSYLDLSNN-QLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLR 358 (820)
Q Consensus 280 l~g~ip~~~l~~l~~L~~L~Ls~n-~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~ 358 (820)
+. .+|.- +..++.++.+..++| ++..++. .. ++.+++..|.+.+.++..+..+. . .|+|.+|.+.
T Consensus 126 f~-~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~i~~l~-----~--~ldLr~N~~~ 191 (1081)
T KOG0618|consen 126 FG-PIPLV-IEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLIDIYNLT-----H--QLDLRYNEME 191 (1081)
T ss_pred cC-CCchh-HHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcchhhhh-----e--eeecccchhh
Confidence 55 55544 445555555555555 1112221 11 55555555555555555444433 2 4566666554
Q ss_pred ccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCc
Q 045139 359 GSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNS 438 (820)
Q Consensus 359 ~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~ 438 (820)
.-.+..+.+|+.++...|++..+.+++ ++|+.|+.++|.++...+ -..-.+|+++++++|+
T Consensus 192 --~~dls~~~~l~~l~c~rn~ls~l~~~g--------------~~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 192 --VLDLSNLANLEVLHCERNQLSELEISG--------------PSLTALYADHNPLTTLDV---HPVPLNLQYLDISHNN 252 (1081)
T ss_pred --hhhhhhccchhhhhhhhcccceEEecC--------------cchheeeeccCcceeecc---ccccccceeeecchhh
Confidence 223444555555555555444433221 345555555555553211 1122355555555555
Q ss_pred cccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCc
Q 045139 439 LILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPD 518 (820)
Q Consensus 439 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~ 518 (820)
+. .+|.|+..+.+|+.++..+|++ ..+|..++.. .+|+.|.+.+|.+.-..|
T Consensus 253 l~-------------------------~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~-~~L~~l~~~~nel~yip~- 304 (1081)
T KOG0618|consen 253 LS-------------------------NLPEWIGACANLEALNANHNRL-VALPLRISRI-TSLVSLSAAYNELEYIPP- 304 (1081)
T ss_pred hh-------------------------cchHHHHhcccceEecccchhH-HhhHHHHhhh-hhHHHHHhhhhhhhhCCC-
Confidence 53 4567777777777777777777 3445544443 356666655555543222
Q ss_pred ccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCc-ccccCCC-
Q 045139 519 LSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPN-CSKNWQK- 596 (820)
Q Consensus 519 ~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~- 596 (820)
.+..++ .|++|+|..|++. ..|+ .+.-...
T Consensus 305 -------------------------~le~~~----------------------sL~tLdL~~N~L~-~lp~~~l~v~~~~ 336 (1081)
T KOG0618|consen 305 -------------------------FLEGLK----------------------SLRTLDLQSNNLP-SLPDNFLAVLNAS 336 (1081)
T ss_pred -------------------------cccccc----------------------eeeeeeehhcccc-ccchHHHhhhhHH
Confidence 122222 6788888888887 4444 3333333
Q ss_pred CcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcC
Q 045139 597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR 676 (820)
Q Consensus 597 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~ 676 (820)
|..|+.+.|++.......=...+.|+.|.+.+|.++...-+.+.+.+.|+.|+|++|++. .+|.....++..|+.|+||
T Consensus 337 l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LS 415 (1081)
T KOG0618|consen 337 LNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLS 415 (1081)
T ss_pred HHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcc
Confidence 777888888877433222233567888999999998887778888889999999999987 7887766688888999999
Q ss_pred cccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeecccccccccc
Q 045139 677 SNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTL 756 (820)
Q Consensus 677 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 756 (820)
+|+++ .+|..+..+..|++|...+|++. ..| .+.+++.|
T Consensus 416 GNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL-------------------------------------- 454 (1081)
T KOG0618|consen 416 GNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL-------------------------------------- 454 (1081)
T ss_pred cchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc--------------------------------------
Confidence 99988 78888888889999988888887 566 66666666
Q ss_pred CceEEEECCCCcCeec-CCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCc
Q 045139 757 GLVKSIDLSSNRLYGE-IPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNM 815 (820)
Q Consensus 757 ~~L~~LdLs~N~l~~~-ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~ 815 (820)
+.+|+|.|+|+.. +|.-..-++|++|||++|.=.-..-..|..+.++...|++-|+
T Consensus 455 ---~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~ 511 (1081)
T KOG0618|consen 455 ---KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNN 511 (1081)
T ss_pred ---eEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccCC
Confidence 8899999998733 2322222789999999997333444567777777777777663
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=6.9e-35 Score=318.44 Aligned_cols=465 Identities=25% Similarity=0.349 Sum_probs=249.6
Q ss_pred CCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCe
Q 045139 114 LQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEY 193 (820)
Q Consensus 114 l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 193 (820)
.-+|+.||+++|.++. .|..|..+.+|+.|+++.|.+. .+|.+.+++.+|++|.|..| .....+..+..+++|++
T Consensus 44 ~v~L~~l~lsnn~~~~--fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n--~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISS--FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNN--RLQSLPASISELKNLQY 118 (1081)
T ss_pred eeeeEEeecccccccc--CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccc--hhhcCchhHHhhhcccc
Confidence 3347777777776654 6666777777777777777766 66666777777777777766 34444555566666666
Q ss_pred eeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEE
Q 045139 194 VRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYL 273 (820)
Q Consensus 194 L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 273 (820)
|++++|.+.. +|..+..+..++.+..++|.... .++. ..++.+++..|.+.+.++.++..+. . .|
T Consensus 119 LdlS~N~f~~---~Pl~i~~lt~~~~~~~s~N~~~~-------~lg~--~~ik~~~l~~n~l~~~~~~~i~~l~-~--~l 183 (1081)
T KOG0618|consen 119 LDLSFNHFGP---IPLVIEVLTAEEELAASNNEKIQ-------RLGQ--TSIKKLDLRLNVLGGSFLIDIYNLT-H--QL 183 (1081)
T ss_pred cccchhccCC---CchhHHhhhHHHHHhhhcchhhh-------hhcc--ccchhhhhhhhhcccchhcchhhhh-e--ee
Confidence 6666666654 34445555555555555552111 1111 2244455555555554444443333 1 35
Q ss_pred EccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcC
Q 045139 274 DLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLN 353 (820)
Q Consensus 274 ~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~ 353 (820)
||++|.+. ... +.++.+|+.+....|+++.+.. ..+ +++.|+.+
T Consensus 184 dLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~---~g~-----------------------------~l~~L~a~ 227 (1081)
T KOG0618|consen 184 DLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI---SGP-----------------------------SLTALYAD 227 (1081)
T ss_pred ecccchhh-hhh---hhhccchhhhhhhhcccceEEe---cCc-----------------------------chheeeec
Confidence 55555443 111 3344444444444444442211 122 45555555
Q ss_pred CCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEe
Q 045139 354 SNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLD 433 (820)
Q Consensus 354 ~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 433 (820)
+|.+....+. ....+|+++ ++++|+++ .+|++++.+.+|+.++..+|+++. +|. .+....+|+.|.
T Consensus 228 ~n~l~~~~~~-p~p~nl~~~----------dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~-ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 228 HNPLTTLDVH-PVPLNLQYL----------DISHNNLS-NLPEWIGACANLEALNANHNRLVA-LPL-RISRITSLVSLS 293 (1081)
T ss_pred cCcceeeccc-cccccceee----------ecchhhhh-cchHHHHhcccceEecccchhHHh-hHH-HHhhhhhHHHHH
Confidence 5555422211 112233333 33344444 345777777777777777777754 444 455666777777
Q ss_pred CcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCC-CcEEEEcCCCcC
Q 045139 434 LSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSP-NLYYLNLSHNHF 512 (820)
Q Consensus 434 Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~-~L~~L~ls~n~l 512 (820)
+.+|.+. .+|......+.|+.|++..|++. ..|+.++.... .+..++.+.|++
T Consensus 294 ~~~nel~-------------------------yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l 347 (1081)
T KOG0618|consen 294 AAYNELE-------------------------YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKL 347 (1081)
T ss_pred hhhhhhh-------------------------hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccc
Confidence 7777663 45555666677777777777774 33443333222 366666666666
Q ss_pred CCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccc
Q 045139 513 TGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSK 592 (820)
Q Consensus 513 ~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 592 (820)
.......-.....+ +.|.+.+|.++...-+.+.... +|+.|+|++|++.......+.
T Consensus 348 ~~lp~~~e~~~~~L-q~LylanN~Ltd~c~p~l~~~~----------------------hLKVLhLsyNrL~~fpas~~~ 404 (1081)
T KOG0618|consen 348 STLPSYEENNHAAL-QELYLANNHLTDSCFPVLVNFK----------------------HLKVLHLSYNRLNSFPASKLR 404 (1081)
T ss_pred cccccccchhhHHH-HHHHHhcCcccccchhhhcccc----------------------ceeeeeecccccccCCHHHHh
Confidence 53321111111122 4455555555543222222211 566666666666533334556
Q ss_pred cCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccc-cCcchhcCCCCcc
Q 045139 593 NWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGI-IPAWIGDSLPDLV 671 (820)
Q Consensus 593 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~~l~~L~ 671 (820)
++..|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..++.|+.+|+|.|+++.. +|.... .++|+
T Consensus 405 kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p--~p~Lk 479 (1081)
T KOG0618|consen 405 KLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP--SPNLK 479 (1081)
T ss_pred chHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC--Ccccc
Confidence 6666666666666666 56666666666666666666665 455 566666666666666666532 222221 25666
Q ss_pred EEEcCcccccccCCcccCCCCCCCEEeCcCC
Q 045139 672 VLSLRSNNFHGRVPVQVCHLQRIQVLDLSQN 702 (820)
Q Consensus 672 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 702 (820)
+||+++|.-....-..+..+..+...++.-|
T Consensus 480 yLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 480 YLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred eeeccCCcccccchhhhHHhhhhhheecccC
Confidence 6666666633233344444555555555544
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.3e-33 Score=294.23 Aligned_cols=130 Identities=25% Similarity=0.406 Sum_probs=76.9
Q ss_pred CCcEEEccCCcccC-CCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCc
Q 045139 269 SLVYLDLSSNKLQG-PIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTL 347 (820)
Q Consensus 269 ~L~~L~Ls~n~l~g-~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L 347 (820)
-.+-.|+++|.++| ..|.. ...+++++.|.|...++..+|+.++.+.+|++|.+++|++....
T Consensus 8 FVrGvDfsgNDFsg~~FP~~-v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vh--------------- 71 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHD-VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVH--------------- 71 (1255)
T ss_pred eeecccccCCcCCCCcCchh-HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhh---------------
Confidence 45566777777774 45555 66777777777777777777777777777777766666665432
Q ss_pred cEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCC
Q 045139 348 EILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLS 427 (820)
Q Consensus 348 ~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 427 (820)
-.++.++.|+.+.+.+|+++ ..-+|..+.++..|+.|||++|+++. +|. .+.+-+
T Consensus 72 --------------GELs~Lp~LRsv~~R~N~LK---------nsGiP~diF~l~dLt~lDLShNqL~E-vP~-~LE~AK 126 (1255)
T KOG0444|consen 72 --------------GELSDLPRLRSVIVRDNNLK---------NSGIPTDIFRLKDLTILDLSHNQLRE-VPT-NLEYAK 126 (1255)
T ss_pred --------------hhhccchhhHHHhhhccccc---------cCCCCchhcccccceeeecchhhhhh-cch-hhhhhc
Confidence 22333444444444333332 11345556666666666666666654 444 455555
Q ss_pred CCCEEeCcCCcc
Q 045139 428 RLTYLDLSHNSL 439 (820)
Q Consensus 428 ~L~~L~Ls~n~l 439 (820)
++..|+||+|+|
T Consensus 127 n~iVLNLS~N~I 138 (1255)
T KOG0444|consen 127 NSIVLNLSYNNI 138 (1255)
T ss_pred CcEEEEcccCcc
Confidence 555666666555
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.7e-33 Score=291.94 Aligned_cols=370 Identities=30% Similarity=0.403 Sum_probs=224.3
Q ss_pred cCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCC
Q 045139 112 IGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFL 191 (820)
Q Consensus 112 ~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L 191 (820)
+-++..|-.|+++|.++|..+|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|. ...
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~--L~~----------- 69 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQ--LIS----------- 69 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhh--hHh-----------
Confidence 345566777888888887778888888999999999888888 888888888888888888881 111
Q ss_pred CeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCC-CCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCC
Q 045139 192 EYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPS-VIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL 270 (820)
Q Consensus 192 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 270 (820)
+...+..+|.|+.+.+..|++.. -+| ..+..+ ..|+.||||.|++. ..|..+-... ++
T Consensus 70 ---------------vhGELs~Lp~LRsv~~R~N~LKnsGiP---~diF~l-~dLt~lDLShNqL~-EvP~~LE~AK-n~ 128 (1255)
T KOG0444|consen 70 ---------------VHGELSDLPRLRSVIVRDNNLKNSGIP---TDIFRL-KDLTILDLSHNQLR-EVPTNLEYAK-NS 128 (1255)
T ss_pred ---------------hhhhhccchhhHHHhhhccccccCCCC---chhccc-ccceeeecchhhhh-hcchhhhhhc-Cc
Confidence 22233444444444444444421 122 233344 45555555555554 3444443333 56
Q ss_pred cEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEE
Q 045139 271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350 (820)
Q Consensus 271 ~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L 350 (820)
-.|+|++|+|. .||...|.+++.|-.||||+|++..+|+.+..+..|++|.|++|.+....-.
T Consensus 129 iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr---------------- 191 (1255)
T KOG0444|consen 129 IVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR---------------- 191 (1255)
T ss_pred EEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh----------------
Confidence 66666666666 6666666666666666666666666666666666666666655554321100
Q ss_pred EcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCC
Q 045139 351 QLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLT 430 (820)
Q Consensus 351 ~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 430 (820)
.+..+++|+.|++++.+= --..+|.++..+.+|..+|++.|.+.- +|+ .+-++++|+
T Consensus 192 ------------QLPsmtsL~vLhms~TqR---------Tl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPe-cly~l~~Lr 248 (1255)
T KOG0444|consen 192 ------------QLPSMTSLSVLHMSNTQR---------TLDNIPTSLDDLHNLRDVDLSENNLPI-VPE-CLYKLRNLR 248 (1255)
T ss_pred ------------cCccchhhhhhhcccccc---------hhhcCCCchhhhhhhhhccccccCCCc-chH-HHhhhhhhh
Confidence 122233444443332111 111345555555555556665555543 333 344444444
Q ss_pred EEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCC
Q 045139 431 YLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHN 510 (820)
Q Consensus 431 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n 510 (820)
.|+||+|+++
T Consensus 249 rLNLS~N~it---------------------------------------------------------------------- 258 (1255)
T KOG0444|consen 249 RLNLSGNKIT---------------------------------------------------------------------- 258 (1255)
T ss_pred eeccCcCcee----------------------------------------------------------------------
Confidence 4444444432
Q ss_pred cCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcc
Q 045139 511 HFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNC 590 (820)
Q Consensus 511 ~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 590 (820)
..-.. ...+ . ++++|++|.|+++ .+|++
T Consensus 259 ---eL~~~-~~~W---------------------------------------------~--~lEtLNlSrNQLt-~LP~a 286 (1255)
T KOG0444|consen 259 ---ELNMT-EGEW---------------------------------------------E--NLETLNLSRNQLT-VLPDA 286 (1255)
T ss_pred ---eeecc-HHHH---------------------------------------------h--hhhhhccccchhc-cchHH
Confidence 10000 0000 0 5677777777776 67777
Q ss_pred cccCCCCcEEEcCCCeee-ecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCC
Q 045139 591 SKNWQKLTVLNLANNKFS-GKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPD 669 (820)
Q Consensus 591 ~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~ 669 (820)
+..++.|+.|.+.+|+++ .-+|+.++.+.+|+.+..++|.+. ..|+++..|..|+.|.|++|++. .+|+.+. -++.
T Consensus 287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH-lL~~ 363 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH-LLPD 363 (1255)
T ss_pred HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh-hcCC
Confidence 777777777777777764 246777777777777777777776 67778888888888888888876 7777776 6778
Q ss_pred ccEEEcCccccc
Q 045139 670 LVVLSLRSNNFH 681 (820)
Q Consensus 670 L~~L~L~~N~l~ 681 (820)
|+.||+..|+-.
T Consensus 364 l~vLDlreNpnL 375 (1255)
T KOG0444|consen 364 LKVLDLRENPNL 375 (1255)
T ss_pred cceeeccCCcCc
Confidence 888888877754
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=6.7e-25 Score=218.88 Aligned_cols=52 Identities=33% Similarity=0.412 Sum_probs=46.5
Q ss_pred eEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCC
Q 045139 759 VKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN 814 (820)
Q Consensus 759 L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N 814 (820)
.+++++.+|.++ .+| + .+.+| .+|+|+|+++..--..|.++++|.+|-+|+|
T Consensus 446 ~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 446 VTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 378999999998 888 7 67788 9999999999777788999999999999997
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.8e-21 Score=237.84 Aligned_cols=347 Identities=22% Similarity=0.278 Sum_probs=239.4
Q ss_pred hhhhccCCCcEEEcCCCCC------CCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEE
Q 045139 310 KSFRNLCRLRALYQDSNNL------TDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVL 383 (820)
Q Consensus 310 ~~l~~l~~L~~L~L~~n~l------~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L 383 (820)
..|.++++|+.|.+..+.. ...+|..|..++. +|+.|++.++.+. .+|....+.+|++|++.++.++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~----~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~-- 624 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP----KLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLE-- 624 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCc----ccEEEEecCCCCC-CCCCcCCccCCcEEECcCcccc--
Confidence 3577788888887765532 2345666666553 6888888888776 4454224567776665554444
Q ss_pred EccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccC
Q 045139 384 YLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQ 463 (820)
Q Consensus 384 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~ 463 (820)
.++..+..+++|+.|+++++...+.+|. +..+++|++|++++|.....+|..+..+.+|+.|++++|..
T Consensus 625 ---------~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 625 ---------KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred ---------ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence 3455667778888888887664455664 67778888888888776666777777777777777777766
Q ss_pred CCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCC
Q 045139 464 GPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPP 543 (820)
Q Consensus 464 ~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~ 543 (820)
.+.+|..+ .+++|+.|++++|...+.+|.. .++|+.|++++|.+.. +|..+ .+..+ ..|.+.++.... ++.
T Consensus 694 L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~-lP~~~-~l~~L-~~L~l~~~~~~~-l~~ 764 (1153)
T PLN03210 694 LEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEE-FPSNL-RLENL-DELILCEMKSEK-LWE 764 (1153)
T ss_pred cCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccc-ccccc-ccccc-ccccccccchhh-ccc
Confidence 66666654 5777777777777665555542 2467777777777653 33321 23333 444444322110 000
Q ss_pred CCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcE
Q 045139 544 IPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLS 623 (820)
Q Consensus 544 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 623 (820)
....+ .+.. .....+|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.
T Consensus 765 ~~~~l-------------~~~~-~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~ 829 (1153)
T PLN03210 765 RVQPL-------------TPLM-TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLES 829 (1153)
T ss_pred ccccc-------------chhh-hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCE
Confidence 00000 0000 0011279999999998888899999999999999999987666788776 7899999
Q ss_pred EeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCC
Q 045139 624 LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNN 703 (820)
Q Consensus 624 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 703 (820)
|++++|.....+|.. .++|++|+|++|.++ .+|.++. .+++|++|++++|+-...+|..+..+++|+.+++++|.
T Consensus 830 L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 830 LDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHh-cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 999999877666654 367999999999998 7899987 79999999999966555688888999999999999885
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=4.1e-21 Score=236.38 Aligned_cols=331 Identities=21% Similarity=0.270 Sum_probs=182.9
Q ss_pred chhhhhhcccCCcCCccEEEcCCCCC------cccCCC-CcCcC-CCcEEecCCCcccEEEccCCcccccccccccCCCC
Q 045139 332 LPNLFLKLSNCSRDTLEILQLNSNML------RGSLPD-ITLFS-SLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQ 403 (820)
Q Consensus 332 ~~~~~~~l~~~~~~~L~~L~L~~n~l------~~~~p~-~~~l~-~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~ 403 (820)
.+.+|..+. +|+.|.+..+.. ...+|. +..++ +|+.|++.++.++ .+|..+ ...+
T Consensus 550 ~~~aF~~m~-----~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-----------~lP~~f-~~~~ 612 (1153)
T PLN03210 550 HENAFKGMR-----NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-----------CMPSNF-RPEN 612 (1153)
T ss_pred cHHHHhcCc-----cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-----------CCCCcC-CccC
Confidence 345566666 777777765532 223333 33332 4555544433332 455555 4567
Q ss_pred CCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecC
Q 045139 404 LELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVS 483 (820)
Q Consensus 404 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 483 (820)
|+.|++.+|++.. ++. .+..+++|+.|+++++.....+| .+...++|+.|++.+|.....+|..+..+++|+.|+++
T Consensus 613 L~~L~L~~s~l~~-L~~-~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 613 LVKLQMQGSKLEK-LWD-GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CcEEECcCccccc-ccc-ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 7788888777764 443 35677778888887766544444 35556677777777777666777777777777777777
Q ss_pred CCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccc
Q 045139 484 AAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLS 563 (820)
Q Consensus 484 ~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~ 563 (820)
+|...+.+|..+ .+++|+.|++++|...+.+|... ..+ +.|++++|.+. .+|... .+
T Consensus 690 ~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~~---~nL-~~L~L~~n~i~-~lP~~~-~l--------------- 746 (1153)
T PLN03210 690 RCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDIS---TNI-SWLDLDETAIE-EFPSNL-RL--------------- 746 (1153)
T ss_pred CCCCcCccCCcC--CCCCCCEEeCCCCCCcccccccc---CCc-CeeecCCCccc-cccccc-cc---------------
Confidence 765555666543 23566667766665444444321 122 44444444432 222211 00
Q ss_pred hhhccccccccEEEccCCcc-------ccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCC
Q 045139 564 FLCQISDEHFRYLDLSDNLL-------SGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP 636 (820)
Q Consensus 564 ~~~~~~~~~L~~L~Ls~n~l-------~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 636 (820)
.+|+.|++.++.. ....+......++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|
T Consensus 747 -------~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 747 -------ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred -------cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 0444444443221 11111122233566666666666555666666666666666666665555555
Q ss_pred cchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccc
Q 045139 637 SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLT 716 (820)
Q Consensus 637 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 716 (820)
..+ ++++|+.|++++|.....+|.. .++|+.|+|++|.+. .+|..+..+++|+.|++++|+-...+|..+..++
T Consensus 820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~ 893 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK 893 (1153)
T ss_pred CCC-CccccCEEECCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence 544 5666666666665544444432 345666666666665 4566666666666666666433334555544444
Q ss_pred cc
Q 045139 717 AM 718 (820)
Q Consensus 717 ~L 718 (820)
.|
T Consensus 894 ~L 895 (1153)
T PLN03210 894 HL 895 (1153)
T ss_pred CC
Confidence 44
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.4e-21 Score=220.71 Aligned_cols=258 Identities=24% Similarity=0.368 Sum_probs=147.0
Q ss_pred ccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCc
Q 045139 477 FSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKN 556 (820)
Q Consensus 477 L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n 556 (820)
-..|+++++.++ .+|..+. ++|+.|++++|+++. +|.. .+.+ +.|++++|+++. +|..+.+++.|++..|
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l---p~~L-k~LdLs~N~Lts-LP~lp~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL---PPEL-RTLEVSGNQLTS-LPVLPPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC---CCCC-cEEEecCCccCc-ccCcccccceeeccCC
Confidence 344555555554 3444332 245555555555553 2221 1233 555555555552 3444555556666665
Q ss_pred ccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCC
Q 045139 557 MFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP 636 (820)
Q Consensus 557 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 636 (820)
.+..... .. ..|+.|++++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|++++ +|
T Consensus 273 ~L~~Lp~-lp----~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 273 PLTHLPA-LP----SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred chhhhhh-ch----hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-cc
Confidence 5543211 11 15667777777776 34432 3567777777777764 4432 2346667777777763 44
Q ss_pred cchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccc
Q 045139 637 SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLT 716 (820)
Q Consensus 637 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 716 (820)
.. ..+|++|+|++|+|+ .+|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|... +
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l~---s 402 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVLP---S 402 (788)
T ss_pred cc---ccccceEecCCCccC-CCCCC----Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCcc---c
Confidence 31 136777777777776 45542 345666777777776 35543 245777777777776 344322 1
Q ss_pred cccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCC
Q 045139 717 AMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPI 796 (820)
Q Consensus 717 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~i 796 (820)
.| +.||+++|+++ .+|.+ ..+|+.|++++|+++ .+
T Consensus 403 ~L-----------------------------------------~~LdLS~N~Ls-sIP~l--~~~L~~L~Ls~NqLt-~L 437 (788)
T PRK15387 403 EL-----------------------------------------KELMVSGNRLT-SLPML--PSGLLSLSVYRNQLT-RL 437 (788)
T ss_pred CC-----------------------------------------CEEEccCCcCC-CCCcc--hhhhhhhhhccCccc-cc
Confidence 22 66777777776 46622 235666777777776 56
Q ss_pred cccccCCCCCCeEeCCCCcCccc
Q 045139 797 PSKIGGLTLLNSLDLSKNMLMRA 819 (820)
Q Consensus 797 p~~l~~l~~L~~LdLs~N~l~g~ 819 (820)
|+.+.++++|+.|||++|+|+|.
T Consensus 438 P~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 438 PESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred ChHHhhccCCCeEECCCCCCCch
Confidence 77777777777777777777764
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=1e-23 Score=210.43 Aligned_cols=390 Identities=25% Similarity=0.280 Sum_probs=195.3
Q ss_pred CCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCc-chhhhccCCCcEEEcCC-CCCCCcchhhhhhcccCCcC
Q 045139 268 SSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDS-NNLTDLLPNLFLKLSNCSRD 345 (820)
Q Consensus 268 ~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~~~~~ 345 (820)
+.-+.++|..|+|+ .||+++|+.+++|+.|||++|.|+.| |+.|.++++|..|.+.+ |+|+......|+++.
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~----- 140 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS----- 140 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH-----
Confidence 36677778888887 77877788888888888888888866 56677777776666655 777777777777777
Q ss_pred CccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccc-cccCCCCCCEEecCCCcCccccCHHHh
Q 045139 346 TLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTK-SIGQLSQLELLDVASNSLKGMITEAHL 423 (820)
Q Consensus 346 ~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l 423 (820)
.++.|.+..|++...... +..++++..|.+.+|.++ .++. .|..+..++.+.+..|.+.. .
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-----------~i~~~tf~~l~~i~tlhlA~np~ic------d 203 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-----------SICKGTFQGLAAIKTLHLAQNPFIC------D 203 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-----------hhccccccchhccchHhhhcCcccc------c
Confidence 677777777777654444 555556655555544443 2222 45555555666555555321 1
Q ss_pred hcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcC-CCccEEecCCCCccCCCCchhhccCCCc
Q 045139 424 SNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQ-NKFSELDVSAAEISDTVPNWFWDLSPNL 502 (820)
Q Consensus 424 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~i~~~~p~~~~~~~~~L 502 (820)
.+++.+... + ...+..+..........+...++...-+.-+... ..+..--.+.+...+.-|..-+..+++|
T Consensus 204 CnL~wla~~-~------a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L 276 (498)
T KOG4237|consen 204 CNLPWLADD-L------AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNL 276 (498)
T ss_pred cccchhhhH-H------hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccc
Confidence 111111110 0 0011111122222222222222222222211111 1111111223334445555445555677
Q ss_pred EEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCc
Q 045139 503 YYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNL 582 (820)
Q Consensus 503 ~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~ 582 (820)
+.|++++|+++++-+..|.....+ ++|.+..|++.-.-...+..+. .|+.|+|.+|+
T Consensus 277 ~~lnlsnN~i~~i~~~aFe~~a~l-~eL~L~~N~l~~v~~~~f~~ls----------------------~L~tL~L~~N~ 333 (498)
T KOG4237|consen 277 RKLNLSNNKITRIEDGAFEGAAEL-QELYLTRNKLEFVSSGMFQGLS----------------------GLKTLSLYDNQ 333 (498)
T ss_pred eEeccCCCccchhhhhhhcchhhh-hhhhcCcchHHHHHHHhhhccc----------------------cceeeeecCCe
Confidence 777777777776666655544443 4444444433211111111111 45555555555
Q ss_pred cccccCcccccCCCCcEEEcCCCeeeec-CCCCc---------------ccccCCcEEeccCCcccc---cCCcch----
Q 045139 583 LSGELPNCSKNWQKLTVLNLANNKFSGK-IPDSM---------------DFNCMMLSLHLRNNSFIG---ELPSSV---- 639 (820)
Q Consensus 583 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l---------------~~l~~L~~L~Ls~N~l~~---~~p~~l---- 639 (820)
|+..-|.+|..+.+|..|++-.|.+.=. --.++ +....++.+.++...+.. ..|+..
T Consensus 334 it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~ 413 (498)
T KOG4237|consen 334 ITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLT 413 (498)
T ss_pred eEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCC
Confidence 5555555555555555555555543200 00000 011123333333333221 011111
Q ss_pred -----hcCCCCCE-EECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcc
Q 045139 640 -----KSFTQLTV-LDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLN 713 (820)
Q Consensus 640 -----~~l~~L~~-L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 713 (820)
..++-+.+ ...|+..++ .+|..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+++|+++..--..|.
T Consensus 414 s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP---~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~ 485 (498)
T KOG4237|consen 414 SSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP---VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFS 485 (498)
T ss_pred CCCCCCCcchhhhhHhhcccchh-hcCCCCC---chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhccccc
Confidence 11111221 122222222 4444332 24567888889888 67766 57778 889999998855555666
Q ss_pred ccccc
Q 045139 714 NLTAM 718 (820)
Q Consensus 714 ~l~~L 718 (820)
+++.+
T Consensus 486 n~tql 490 (498)
T KOG4237|consen 486 NMTQL 490 (498)
T ss_pred chhhh
Confidence 76666
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=1.9e-20 Score=213.42 Aligned_cols=279 Identities=25% Similarity=0.388 Sum_probs=193.8
Q ss_pred hhhcccCCcCCccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcC
Q 045139 336 FLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSL 414 (820)
Q Consensus 336 ~~~l~~~~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 414 (820)
...+..|-...-..|+++.|.++ .+|. +. ++|+.|.+.+|++ + .+|. .+++|++|++++|++
T Consensus 192 ~~r~~~Cl~~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~L----------t-~LP~---lp~~Lk~LdLs~N~L 254 (788)
T PRK15387 192 VQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNL----------T-SLPA---LPPELRTLEVSGNQL 254 (788)
T ss_pred HHHHHHHhcCCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcC----------C-CCCC---CCCCCcEEEecCCcc
Confidence 44444555456788999999888 4555 43 3566665554444 3 2343 246788888888888
Q ss_pred ccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCch
Q 045139 415 KGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNW 494 (820)
Q Consensus 415 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~ 494 (820)
+. +|. ..++|+.|++++|.+. .+|.. ..+|+.|++++|+++. +|..
T Consensus 255 ts-LP~----lp~sL~~L~Ls~N~L~-------------------------~Lp~l---p~~L~~L~Ls~N~Lt~-LP~~ 300 (788)
T PRK15387 255 TS-LPV----LPPGLLELSIFSNPLT-------------------------HLPAL---PSGLCKLWIFGNQLTS-LPVL 300 (788)
T ss_pred Cc-ccC----cccccceeeccCCchh-------------------------hhhhc---hhhcCEEECcCCcccc-cccc
Confidence 75 443 2357778888887764 22221 2457778888888763 4432
Q ss_pred hhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhcccccccc
Q 045139 495 FWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFR 574 (820)
Q Consensus 495 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~ 574 (820)
+++|+.|++++|++++. |... ..+ ..|++++|.+++ +|..+. +|+
T Consensus 301 ----p~~L~~LdLS~N~L~~L-p~lp---~~L-~~L~Ls~N~L~~-LP~lp~-------------------------~Lq 345 (788)
T PRK15387 301 ----PPGLQELSVSDNQLASL-PALP---SEL-CKLWAYNNQLTS-LPTLPS-------------------------GLQ 345 (788)
T ss_pred ----ccccceeECCCCccccC-CCCc---ccc-cccccccCcccc-cccccc-------------------------ccc
Confidence 35788888888888763 3211 122 556666666653 333221 788
Q ss_pred EEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCc
Q 045139 575 YLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNK 654 (820)
Q Consensus 575 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 654 (820)
.|++++|++++ +|.. .++|+.|++++|++.+ +|.. ..+|+.|++++|++++ +|.. .++|+.|++++|+
T Consensus 346 ~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~ 413 (788)
T PRK15387 346 ELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNR 413 (788)
T ss_pred eEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCc
Confidence 89999999884 5543 3578888999999884 6653 3578999999999985 5543 3579999999999
Q ss_pred CccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139 655 ISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM 718 (820)
Q Consensus 655 l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 718 (820)
++ .+|.. ..+|+.|++++|+++ .+|..++.+++|+.|+|++|++++.+|..+..+...
T Consensus 414 Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s~ 471 (788)
T PRK15387 414 LT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 471 (788)
T ss_pred CC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhcC
Confidence 98 57754 347888999999998 789999999999999999999999888887665544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=5.5e-19 Score=203.04 Aligned_cols=120 Identities=22% Similarity=0.352 Sum_probs=72.1
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+|+.|++++|+++. +|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|+++
T Consensus 305 sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs 375 (754)
T PRK15370 305 GITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVS 375 (754)
T ss_pred hHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECC
Confidence 45666677777663 443332 567777777777764 555443 56777777777766 3554442 467777777
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCccc----CCCCCCCEEeCcCCCCc
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV----CHLQRIQVLDLSQNNIS 705 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l----~~l~~L~~L~Ls~N~l~ 705 (820)
+|+++ .+|..+. ..|+.|++++|++. .+|..+ ..++.+..+++.+|+++
T Consensus 376 ~N~Lt-~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 376 RNALT-NLPENLP---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCcCC-CCCHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 77776 4565543 25666777777666 344332 33456666667666665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.6e-18 Score=199.26 Aligned_cols=245 Identities=24% Similarity=0.410 Sum_probs=142.4
Q ss_pred CCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCC-CCcceEEec
Q 045139 475 NKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPI-PLTVTSLIL 553 (820)
Q Consensus 475 ~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~-~~~l~~l~l 553 (820)
.+.+.|+++++.++. +|..+ .+.++.|++++|+++.. |..+ ...+ +.|++++|+++. +|.. +.
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I---p~~L~~L~Ls~N~LtsL-P~~l--~~nL-~~L~Ls~N~Lts-LP~~l~~------- 241 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI---PEQITTLILDNNELKSL-PENL--QGNI-KTLYANSNQLTS-IPATLPD------- 241 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc---ccCCcEEEecCCCCCcC-Chhh--ccCC-CEEECCCCcccc-CChhhhc-------
Confidence 356788888888764 56544 25788889988888854 3322 1344 777777777763 3432 22
Q ss_pred cCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccc
Q 045139 554 FKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633 (820)
Q Consensus 554 ~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 633 (820)
+|+.|++++|++. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|++++
T Consensus 242 ------------------~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 242 ------------------TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT 297 (754)
T ss_pred ------------------cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc
Confidence 4566666666665 4554443 35666666666666 3454443 356666666666663
Q ss_pred cCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcc
Q 045139 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLN 713 (820)
Q Consensus 634 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 713 (820)
+|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+.
T Consensus 298 -LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp 366 (754)
T PRK15370 298 -LPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP 366 (754)
T ss_pred -Ccccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc
Confidence 343332 35666666666666 355443 2466666666666663 554443 56666666666665 3454332
Q ss_pred ccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCcc
Q 045139 714 NLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSL 792 (820)
Q Consensus 714 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l 792 (820)
+.| +.|||++|+|+ .+| .+. ..|+.|++++|++
T Consensus 367 --~~L-----------------------------------------~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L 400 (754)
T PRK15370 367 --PTI-----------------------------------------TTLDVSRNALT-NLPENLP--AALQIMQASRNNL 400 (754)
T ss_pred --CCc-----------------------------------------CEEECCCCcCC-CCCHhHH--HHHHHHhhccCCc
Confidence 122 56666666666 445 443 2466666666666
Q ss_pred ccCCcccc----cCCCCCCeEeCCCCcCc
Q 045139 793 TGPIPSKI----GGLTLLNSLDLSKNMLM 817 (820)
Q Consensus 793 ~~~ip~~l----~~l~~L~~LdLs~N~l~ 817 (820)
+ .+|..+ +.++.+..|++.+|+++
T Consensus 401 ~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 401 V-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred c-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 6 344332 33455666666666664
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.4e-18 Score=186.16 Aligned_cols=283 Identities=20% Similarity=0.231 Sum_probs=183.0
Q ss_pred eeecccccCC-CCCchhhhcCCCccEEecCCCCccCC----CCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCc
Q 045139 455 IIRLGACKQG-PQFPKWLQTQNKFSELDVSAAEISDT----VPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPE 529 (820)
Q Consensus 455 ~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~i~~~----~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~ 529 (820)
.|+|..+.+. ......+..+..|++++++++.+++. ++..+. ..+++++++++++.+.+. +.....
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~-~~~~~~------- 72 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRI-PRGLQS------- 72 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCc-chHHHH-------
Confidence 3556666665 44556667777788888888877543 222222 224577777777665431 110000
Q ss_pred eeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCC---CcEEEcCCCe
Q 045139 530 IDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQK---LTVLNLANNK 606 (820)
Q Consensus 530 l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~Ls~N~ 606 (820)
++..+. . ..+|+.|++++|.+.+..+..+..+.. |++|++++|+
T Consensus 73 -----------~~~~l~--------------------~--~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 73 -----------LLQGLT--------------------K--GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred -----------HHHHHH--------------------h--cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 000000 0 116788888888877655555555555 8888888888
Q ss_pred eee----cCCCCcccc-cCCcEEeccCCcccc----cCCcchhcCCCCCEEECCCCcCccc----cCcchhcCCCCccEE
Q 045139 607 FSG----KIPDSMDFN-CMMLSLHLRNNSFIG----ELPSSVKSFTQLTVLDLGHNKISGI----IPAWIGDSLPDLVVL 673 (820)
Q Consensus 607 l~~----~~p~~l~~l-~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~~l~~L~~L 673 (820)
+++ .+...+..+ ++|+.|++++|.+++ .++..+..+++|++|++++|.+++. ++..+. ..++|+.|
T Consensus 120 ~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~-~~~~L~~L 198 (319)
T cd00116 120 LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK-ANCNLEVL 198 (319)
T ss_pred cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHH-hCCCCCEE
Confidence 773 233345556 788899999998874 2345567778899999999998843 333343 45689999
Q ss_pred EcCccccccc----CCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccc
Q 045139 674 SLRSNNFHGR----VPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKD 749 (820)
Q Consensus 674 ~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (820)
++++|.+.+. ++..+..+++|+.|++++|++++..+..+... +
T Consensus 199 ~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~--~------------------------------- 245 (319)
T cd00116 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA--L------------------------------- 245 (319)
T ss_pred eccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHH--H-------------------------------
Confidence 9999988643 34456778899999999999886333332211 0
Q ss_pred cccccccCceEEEECCCCcCe--e--cCC-CcccccCCCEEeCCCCccccC----CcccccCC-CCCCeEeCCCCcC
Q 045139 750 SEYRNTLGLVKSIDLSSNRLY--G--EIP-EVTSLVGLISLNLSKNSLTGP----IPSKIGGL-TLLNSLDLSKNML 816 (820)
Q Consensus 750 ~~~~~~l~~L~~LdLs~N~l~--~--~ip-~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l-~~L~~LdLs~N~l 816 (820)
....+.|+.|++++|.++ | .++ .+..+++|+.+++++|.++.. ....+... +.|+++|+.+|++
T Consensus 246 ---~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 246 ---LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred ---hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 001234589999999997 2 233 556668999999999999955 44455555 7899999999975
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=6.6e-19 Score=156.25 Aligned_cols=180 Identities=29% Similarity=0.453 Sum_probs=155.5
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+++.|.+|+|+++ .+|..+..+.+|+.|++++|++. .+|..++.++.|+.|+++-|++. ..|..|+.++.|+.|||.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 6788999999998 77888999999999999999998 78999999999999999999998 789999999999999999
Q ss_pred CCcCc-cccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCccccc
Q 045139 652 HNKIS-GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRY 730 (820)
Q Consensus 652 ~N~l~-~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~ 730 (820)
+|++. ..+|..++ .++.|+.|+|++|.+. .+|..++++++||.|.+.+|.+. ++|..++.++.|
T Consensus 111 ynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l------------ 175 (264)
T KOG0617|consen 111 YNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL------------ 175 (264)
T ss_pred ccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH------------
Confidence 99987 45888888 7999999999999998 89999999999999999999998 899999999888
Q ss_pred CCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccC---CCEEeCCCCccccCCccc
Q 045139 731 PLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVG---LISLNLSKNSLTGPIPSK 799 (820)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~---L~~L~Ls~N~l~~~ip~~ 799 (820)
++|.+.+|+++ .+| +++++.- =+.+-+.+|.....|.+.
T Consensus 176 -----------------------------relhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQ 218 (264)
T KOG0617|consen 176 -----------------------------RELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQ 218 (264)
T ss_pred -----------------------------HHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence 78999999998 666 8877542 234455566555444443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=9.6e-19 Score=155.20 Aligned_cols=166 Identities=31% Similarity=0.517 Sum_probs=151.8
Q ss_pred ccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCC
Q 045139 590 CSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPD 669 (820)
Q Consensus 590 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~ 669 (820)
.+.+++..+.|.||+|+++ .+|..++.+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. ..|..++ .++.
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~ 103 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPA 103 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCch
Confidence 3556788899999999999 68889999999999999999998 78999999999999999999998 8999999 7999
Q ss_pred ccEEEcCcccccc-cCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeecc
Q 045139 670 LVVLSLRSNNFHG-RVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRK 748 (820)
Q Consensus 670 L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (820)
|++|||.+|++.. ..|..|..++.|+.|++++|.+. .+|..++++++|
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l------------------------------ 152 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL------------------------------ 152 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce------------------------------
Confidence 9999999999874 57889999999999999999998 899999999988
Q ss_pred ccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCC
Q 045139 749 DSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGL 803 (820)
Q Consensus 749 ~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 803 (820)
+.|.+..|.+- +.| +++.++.|+.|.+.+|+++ .+|..++++
T Consensus 153 -----------qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 153 -----------QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred -----------eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 88999999998 889 9999999999999999999 677777665
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=5.7e-18 Score=181.47 Aligned_cols=209 Identities=23% Similarity=0.250 Sum_probs=154.5
Q ss_pred cccEEEccCCccc------cccCcccccCCCCcEEEcCCCeeeecCCCCcccccC---CcEEeccCCcccc----cCCcc
Q 045139 572 HFRYLDLSDNLLS------GELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCM---MLSLHLRNNSFIG----ELPSS 638 (820)
Q Consensus 572 ~L~~L~Ls~n~l~------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~----~~p~~ 638 (820)
.++.++++++.+. ..++..+..+++|++|++++|.+.+..+..+..+.. |++|++++|++++ .+...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 4677777777665 234556778899999999999998766666666666 9999999999983 34445
Q ss_pred hhcC-CCCCEEECCCCcCccc----cCcchhcCCCCccEEEcCcccccc----cCCcccCCCCCCCEEeCcCCCCccccc
Q 045139 639 VKSF-TQLTVLDLGHNKISGI----IPAWIGDSLPDLVVLSLRSNNFHG----RVPVQVCHLQRIQVLDLSQNNISGTVP 709 (820)
Q Consensus 639 l~~l-~~L~~L~Ls~N~l~~~----~p~~l~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p 709 (820)
+..+ ++|++|++++|.+++. ++..+. .+++|++|++++|.+++ .++..+..+++|+.|++++|.+++..+
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALR-ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 6677 8999999999999843 333444 57789999999999984 234455667899999999999875433
Q ss_pred hhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-Cccc-----ccCCC
Q 045139 710 QCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTS-----LVGLI 783 (820)
Q Consensus 710 ~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~-----l~~L~ 783 (820)
..+... ...++.|+.||+++|++++... .+.. .+.|+
T Consensus 211 ~~l~~~-------------------------------------~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~ 253 (319)
T cd00116 211 SALAET-------------------------------------LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLL 253 (319)
T ss_pred HHHHHH-------------------------------------hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCce
Confidence 322211 0112345999999999986333 3322 37999
Q ss_pred EEeCCCCccc----cCCcccccCCCCCCeEeCCCCcCcc
Q 045139 784 SLNLSKNSLT----GPIPSKIGGLTLLNSLDLSKNMLMR 818 (820)
Q Consensus 784 ~L~Ls~N~l~----~~ip~~l~~l~~L~~LdLs~N~l~g 818 (820)
.|++++|.++ ..++..+..+++|+++|+++|+++.
T Consensus 254 ~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 254 TLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred EEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 9999999997 2344566777999999999999974
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.52 E-value=6.2e-14 Score=161.28 Aligned_cols=125 Identities=34% Similarity=0.547 Sum_probs=102.8
Q ss_pred cCCHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCc----ccCceEecC--CC--CcEEEEEcCCCCCCCCcccccccc
Q 045139 40 KCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCC----KWRGVSCSN--QT--GHVTMLNLQFRSYMPLRGNISSSL 111 (820)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~~~~l~g~i~~~l 111 (820)
.+.++|.+||.++|+++.++.. .+|. +..|| .|.||+|.. .. .+|+.|+|++ +.+.|.+|..+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~---n~L~g~ip~~i 438 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN---QGLRGFIPNDI 438 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC---CCccccCCHHH
Confidence 4567899999999999876532 4896 44453 799999952 22 2589999998 88899999999
Q ss_pred cCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCC
Q 045139 112 IGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFN 174 (820)
Q Consensus 112 ~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 174 (820)
+++++|++|+|++|.+.+. +|..++.+++|++|+|++|.++|.+|..++++++|++|+|++|
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred hCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 9999999999999999886 8888999999999999999999988888888888888877776
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.37 E-value=1.7e-14 Score=151.58 Aligned_cols=176 Identities=29% Similarity=0.451 Sum_probs=142.3
Q ss_pred ccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCC
Q 045139 573 FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGH 652 (820)
Q Consensus 573 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 652 (820)
-...|++.|++. ++|..+..+..|+.+.|+.|.+. .+|.+++.+..|.+|||+.|+++ .+|..+..|+ |+.|-+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 356788888887 78888888888888888888887 78888888888888888888887 6777777776 88888888
Q ss_pred CcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCC
Q 045139 653 NKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPL 732 (820)
Q Consensus 653 N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~ 732 (820)
|+++ .+|..++ ..+.|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+++..|+
T Consensus 153 Nkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp---------------- 212 (722)
T KOG0532|consen 153 NKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP---------------- 212 (722)
T ss_pred Cccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc----------------
Confidence 8887 7888887 7888888888888887 67788888888888888888887 6676666443
Q ss_pred ccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccc
Q 045139 733 RTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKI 800 (820)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l 800 (820)
|..||+|+|+++ .|| .|.+|+.|++|-|.+|.+. ..|..+
T Consensus 213 --------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 213 --------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred --------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 267888888888 888 8888888888888888887 455544
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.36 E-value=2.4e-14 Score=150.46 Aligned_cols=177 Identities=28% Similarity=0.447 Sum_probs=159.9
Q ss_pred ccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCcc
Q 045139 592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLV 671 (820)
Q Consensus 592 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~ 671 (820)
..+..-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|++|||+.|+++ ..|..++ .--|+
T Consensus 72 ~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLk 146 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLK 146 (722)
T ss_pred ccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcce
Confidence 34555678899999998 79999999999999999999998 78999999999999999999998 8998887 34699
Q ss_pred EEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccc
Q 045139 672 VLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSE 751 (820)
Q Consensus 672 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (820)
.|-+++|+++ .+|+.++.+..|..||.+.|++. .+|..++++.+|
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl--------------------------------- 191 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL--------------------------------- 191 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH---------------------------------
Confidence 9999999999 89999999999999999999998 889999999888
Q ss_pred cccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCccc
Q 045139 752 YRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMRA 819 (820)
Q Consensus 752 ~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g~ 819 (820)
+.|.++.|++. ..| ++..| .|..||+|.|+++ .||-.|.+|+.|++|-|.+|+|..+
T Consensus 192 --------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 192 --------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred --------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 78999999998 666 88855 6999999999999 8999999999999999999999753
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.32 E-value=1.9e-12 Score=142.85 Aligned_cols=192 Identities=34% Similarity=0.501 Sum_probs=112.4
Q ss_pred EEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCccccc-CCcEEeccCCcccccCCcchhcCCCCCEEECCCC
Q 045139 575 YLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNC-MMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHN 653 (820)
Q Consensus 575 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 653 (820)
.++++.|.+... +..+...+.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 355555555322 223344466777777777776 4555555553 6777777777776 34455667777777777777
Q ss_pred cCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCc
Q 045139 654 KISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLR 733 (820)
Q Consensus 654 ~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~ 733 (820)
+++ .+|...+ ..+.|+.|++++|++. .+|..+.....|+++++++|++. .++..+.++..+
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l--------------- 234 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL--------------- 234 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc---------------
Confidence 776 5555443 4667777777777776 55555555556777777777533 444555555444
Q ss_pred cccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCC
Q 045139 734 TDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLS 812 (820)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs 812 (820)
..+.+++|++. .++ .++.+++++.|++++|+++ .++. ++.+.+++.||++
T Consensus 235 --------------------------~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s 285 (394)
T COG4886 235 --------------------------SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLS 285 (394)
T ss_pred --------------------------cccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEecc
Confidence 34445555554 223 5555555666666666665 2333 5555666666666
Q ss_pred CCcCc
Q 045139 813 KNMLM 817 (820)
Q Consensus 813 ~N~l~ 817 (820)
+|.++
T Consensus 286 ~n~~~ 290 (394)
T COG4886 286 GNSLS 290 (394)
T ss_pred Ccccc
Confidence 65554
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1.1e-11 Score=136.73 Aligned_cols=179 Identities=30% Similarity=0.476 Sum_probs=148.7
Q ss_pred cccEEEccCCccccccCcccccCC-CCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEEC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQ-KLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDL 650 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 650 (820)
.++.|++.+|.++ .+|......+ +|+.|++++|++. .+|..++.++.|+.|++++|++. .+|...+..+.|+.|++
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 6889999999998 6777777774 9999999999998 56678899999999999999998 56666668899999999
Q ss_pred CCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCccccc
Q 045139 651 GHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRY 730 (820)
Q Consensus 651 s~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~ 730 (820)
++|++. .+|..+. ....|++|.+++|++. .++..+..+.++..+.+++|++. .+|..++.+..+
T Consensus 194 s~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l------------ 257 (394)
T COG4886 194 SGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNL------------ 257 (394)
T ss_pred cCCccc-cCchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcccccc------------
Confidence 999998 7887654 4566999999999755 56778889999999999999887 335556665555
Q ss_pred CCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCccc
Q 045139 731 PLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSK 799 (820)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip~~ 799 (820)
+.|++++|+++ .++.++.+..++.|++++|.++...|..
T Consensus 258 -----------------------------~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 258 -----------------------------ETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred -----------------------------ceecccccccc-ccccccccCccCEEeccCccccccchhh
Confidence 89999999998 6777889999999999999998665554
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.17 E-value=4.8e-12 Score=122.85 Aligned_cols=135 Identities=30% Similarity=0.403 Sum_probs=102.4
Q ss_pred chhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcccccc
Q 045139 638 SVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTA 717 (820)
Q Consensus 638 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 717 (820)
.+...+.|+++|||+|.|+ .+.+++. -.|.++.|++++|.+... +.+..+++|+.||||+|.++ .+..+-..
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~K--- 350 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLK--- 350 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhh---
Confidence 3344567999999999998 7887776 689999999999999843 34888999999999999887 22222111
Q ss_pred ccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCC-
Q 045139 718 MTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPI- 796 (820)
Q Consensus 718 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~i- 796 (820)
+.+.+.|.|+.|.+. ...+++.+-+|..||+++|+|...-
T Consensus 351 --------------------------------------LGNIKtL~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~lde 391 (490)
T KOG1259|consen 351 --------------------------------------LGNIKTLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQIEELDE 391 (490)
T ss_pred --------------------------------------hcCEeeeehhhhhHh-hhhhhHhhhhheeccccccchhhHHH
Confidence 223378888888886 6667888888888999999887321
Q ss_pred cccccCCCCCCeEeCCCCcCccc
Q 045139 797 PSKIGGLTLLNSLDLSKNMLMRA 819 (820)
Q Consensus 797 p~~l~~l~~L~~LdLs~N~l~g~ 819 (820)
-..+++++-|+.+-|.+|++++.
T Consensus 392 V~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 392 VNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hcccccccHHHHHhhcCCCcccc
Confidence 14578888889988999988764
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.5e-11 Score=125.84 Aligned_cols=193 Identities=24% Similarity=0.229 Sum_probs=121.2
Q ss_pred CCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCC
Q 045139 162 NLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNS 241 (820)
Q Consensus 162 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~ 241 (820)
++.+|+...|.++.....+.-.....+++++.||++.|-+..+..+.+....+|+|+.|+++.|.+...... .....
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s---~~~~~ 195 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS---NTTLL 195 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc---cchhh
Confidence 455555555554411111111344556666666666666666666677777888888888888877654442 22223
Q ss_pred cCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcc--hhhhccCCCc
Q 045139 242 SRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP--KSFRNLCRLR 319 (820)
Q Consensus 242 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip--~~l~~l~~L~ 319 (820)
.+.|+.|.++.|.++..--.++....|+|+.|+|..|...+ +.......+..|++|||++|.+-..+ ...+.++.|+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 37888888888888865555666666789999999885332 22222556778899999999888666 3477888888
Q ss_pred EEEcCCCCCCCcc-hhhhhhcccCCcCCccEEEcCCCCCc
Q 045139 320 ALYQDSNNLTDLL-PNLFLKLSNCSRDTLEILQLNSNMLR 358 (820)
Q Consensus 320 ~L~L~~n~l~~~~-~~~~~~l~~~~~~~L~~L~L~~n~l~ 358 (820)
.|+++.+.+..+. |+.=........++|+.|++..|++.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 8888888887642 22200000011226777777777764
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.12 E-value=1e-10 Score=134.80 Aligned_cols=112 Identities=30% Similarity=0.430 Sum_probs=87.3
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
.++.|+|++|.++|.+|..+..+++|+.|+|++|++.|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcCccccCcchhcCCCCccEEEcCccccccc
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGR 683 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~ 683 (820)
+|+++|.+|..+.....++..+++.+|.....
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC
Confidence 88888888877763334566777777765433
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.7e-11 Score=124.14 Aligned_cols=218 Identities=23% Similarity=0.225 Sum_probs=142.3
Q ss_pred CCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchh-hhhhccCCCCcEEEccCCcccCCCCCCCCC
Q 045139 212 SQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVY-YWLFNSSSSLVYLDLSSNKLQGPIPDSAFP 290 (820)
Q Consensus 212 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~ 290 (820)
.++.+|+++.|.++.+..... ......+++++.|||+.|-+....+ ..+.+-.++|+.|+++.|++.-.+....-.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~---~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGI---EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecCccccccch---hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 344555555555554433221 1222223677777777776654322 234444558888888888876443333233
Q ss_pred CCCCCCEEECCCCCCC--CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccC--CCCcC
Q 045139 291 NPTSLSYLDLSNNQLV--SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSL--PDITL 366 (820)
Q Consensus 291 ~l~~L~~L~Ls~n~l~--~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~--p~~~~ 366 (820)
.+++|+.|.++.|.++ .+-.....+|+|+.|+|..|...........-+. .|+.|+|++|++.... +..+.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~-----~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ-----TLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh-----HHhhccccCCccccccccccccc
Confidence 5788999999999999 5655677899999999999964433333333444 7999999999987544 33888
Q ss_pred cCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCcccc
Q 045139 367 FSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLIL 441 (820)
Q Consensus 367 l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 441 (820)
++.|+.|.++.+.+..+..-... .-+-...+++|++|++..|++...-.-..+..+++|+.|.+..|.+..
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~----s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVE----SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccchhhhhccccCcchhcCCCcc----chhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 99999888887777654332211 111134578999999999999654333456667788888888887754
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1.1e-10 Score=113.56 Aligned_cols=59 Identities=32% Similarity=0.366 Sum_probs=31.1
Q ss_pred CCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCC
Q 045139 269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTD 330 (820)
Q Consensus 269 ~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~ 330 (820)
.|+.+||++|.++ .|.++ ..-.+.++.|++++|.+..+.. +..+++|+.|+|++|.++.
T Consensus 285 ~LtelDLS~N~I~-~iDES-vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~ 343 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDES-VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE 343 (490)
T ss_pred hhhhccccccchh-hhhhh-hhhccceeEEeccccceeeehh-hhhcccceEeecccchhHh
Confidence 4555555555555 44444 4445555555555555554433 4555555555555555543
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=1.1e-10 Score=116.63 Aligned_cols=256 Identities=27% Similarity=0.295 Sum_probs=127.5
Q ss_pred ccccCCCCCCEEECcCCCCCCc---ccCccccCCCCCCEEeccCCCCCC----CCCc-------cCCCCCCCcEEeCCCC
Q 045139 109 SSLIGLQHLNYLNMKYNDFGGK---QIPAFIGSLKNIRHLDLSNAGFTG----RVPY-------QLGNLTSLQYLDLSFN 174 (820)
Q Consensus 109 ~~l~~l~~L~~L~Ls~n~l~~~---~~p~~i~~l~~L~~L~Ls~n~l~~----~~p~-------~l~~l~~L~~L~Ls~n 174 (820)
+.+.....+++++||+|.|... .+...+.+.++|+.-++|.- ++| .+|+ ++-.+++|++||||.|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 3455566777777777777542 13334556667777777653 333 3333 2334556666666666
Q ss_pred ccccccch----hhccCCCCCCeeeCCCccCCCCc--cHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEE
Q 045139 175 FDMLSKKL----EWLSQLSFLEYVRLNQVNLGEAT--DWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHL 248 (820)
Q Consensus 175 ~~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L 248 (820)
... +..+ ..+..+..|++|+|.+|.+.... .+...+ .+|. .+ ...... +.|+++
T Consensus 103 A~G-~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al------~~l~--~~----------kk~~~~-~~Lrv~ 162 (382)
T KOG1909|consen 103 AFG-PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRAL------FELA--VN----------KKAASK-PKLRVF 162 (382)
T ss_pred ccC-ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHH------HHHH--HH----------hccCCC-cceEEE
Confidence 221 1111 12344555555555555554320 011100 0000 00 011111 566777
Q ss_pred ECcCCCCCCch---hhhhhccCCCCcEEEccCCcccCC---CCCCCCCCCCCCCEEECCCCCCC-----CcchhhhccCC
Q 045139 249 DLSLNDVSNSV---YYWLFNSSSSLVYLDLSSNKLQGP---IPDSAFPNPTSLSYLDLSNNQLV-----SVPKSFRNLCR 317 (820)
Q Consensus 249 ~Ls~n~l~~~~---~~~~~~~~~~L~~L~Ls~n~l~g~---ip~~~l~~l~~L~~L~Ls~n~l~-----~ip~~l~~l~~ 317 (820)
....|++...- ....++..+.|+.+.++.|.+... +-...|..+++|+.|||.+|-++ .+...+..+++
T Consensus 163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 77666664322 122334445677777777765411 11112556667777777777666 23344566666
Q ss_pred CcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCccccccccc
Q 045139 318 LRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKS 397 (820)
Q Consensus 318 L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~ 397 (820)
|+++++++|.+......+|..--.-..++|+++.+.+|.++..-. ..+..+
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~-----------------------------~~la~~ 293 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA-----------------------------LALAAC 293 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH-----------------------------HHHHHH
Confidence 777777777666654444433211112244444444444331100 022334
Q ss_pred ccCCCCCCEEecCCCcC
Q 045139 398 IGQLSQLELLDVASNSL 414 (820)
Q Consensus 398 l~~l~~L~~L~L~~n~l 414 (820)
+...+.|+.|+|++|.+
T Consensus 294 ~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 294 MAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcchhhHHhcCCcccc
Confidence 55567788888888888
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=7.7e-10 Score=104.14 Aligned_cols=120 Identities=31% Similarity=0.391 Sum_probs=34.4
Q ss_pred cccEEEccCCccccccCcccc-cCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcch-hcCCCCCEEE
Q 045139 572 HFRYLDLSDNLLSGELPNCSK-NWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSV-KSFTQLTVLD 649 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ 649 (820)
.+++|+|.+|.|+. +. .++ .+.+|+.|++++|.|+. ++ .+..++.|++|++++|+|+.. +..+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-cc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence 45666666666652 22 333 35566666666666663 22 355566666666666666632 2233 3466666666
Q ss_pred CCCCcCccccC-cchhcCCCCccEEEcCcccccccCCc----ccCCCCCCCEEe
Q 045139 650 LGHNKISGIIP-AWIGDSLPDLVVLSLRSNNFHGRVPV----QVCHLQRIQVLD 698 (820)
Q Consensus 650 Ls~N~l~~~~p-~~l~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~ 698 (820)
+++|+|...-. ..+. .+++|++|+|.+|+++.. +. .+..+|+|+.||
T Consensus 95 L~~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 95 LSNNKISDLNELEPLS-SLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TTS---SCCCCGGGG-G-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred CcCCcCCChHHhHHHH-cCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence 66666653221 2232 456666666666666532 21 234455565555
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=4.8e-10 Score=131.82 Aligned_cols=129 Identities=31% Similarity=0.369 Sum_probs=91.8
Q ss_pred cEEEEEcCCCCCCCC-cccccc-cccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCC
Q 045139 89 HVTMLNLQFRSYMPL-RGNISS-SLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSL 166 (820)
Q Consensus 89 ~v~~L~L~~~~~~~l-~g~i~~-~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 166 (820)
.+++|-+.+ +.. -..++. .|..++.|++|||++|.-.+. +|..|+.|-+||+|+|+++.++ .+|..+++|.+|
T Consensus 546 ~L~tLll~~---n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 546 KLRTLLLQR---NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred ccceEEEee---cchhhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 456666655 221 223443 477899999999999765554 9999999999999999999999 899999999999
Q ss_pred cEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcC
Q 045139 167 QYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLR 223 (820)
Q Consensus 167 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls 223 (820)
.+|++.++.. ....+.....+++|++|.+..............+.++.+|+.+...
T Consensus 621 ~~Lnl~~~~~-l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 621 IYLNLEVTGR-LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred heeccccccc-cccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 9999998722 2222334555899999998776644433444455555555555553
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=1.3e-09 Score=102.59 Aligned_cols=105 Identities=32% Similarity=0.467 Sum_probs=31.4
Q ss_pred CccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhh-hccCCCcEEE
Q 045139 244 SLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSF-RNLCRLRALY 322 (820)
Q Consensus 244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l-~~l~~L~~L~ 322 (820)
++++|+|++|.|+. + +.+.....+|+.|++++|.++ .++. +..++.|++|++++|+|+.+++.+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 44555555554442 1 122222226677777777776 4543 666777777777777777765544 3567777777
Q ss_pred cCCCCCCCcch-hhhhhcccCCcCCccEEEcCCCCCc
Q 045139 323 QDSNNLTDLLP-NLFLKLSNCSRDTLEILQLNSNMLR 358 (820)
Q Consensus 323 L~~n~l~~~~~-~~~~~l~~~~~~~L~~L~L~~n~l~ 358 (820)
+++|+|..... ..+..++ +|+.|++.+|+++
T Consensus 95 L~~N~I~~l~~l~~L~~l~-----~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLP-----KLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-T-----T--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCC-----CcceeeccCCccc
Confidence 77777765321 2333344 5666666666665
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.89 E-value=4.5e-10 Score=112.29 Aligned_cols=139 Identities=21% Similarity=0.270 Sum_probs=83.0
Q ss_pred CCCCCCCEEECCCCCCCCc-----chhhhccCCCcEEEcCCCCCCCcc----hhhhhhcccCCcCCccEEEcCCCCCccc
Q 045139 290 PNPTSLSYLDLSNNQLVSV-----PKSFRNLCRLRALYQDSNNLTDLL----PNLFLKLSNCSRDTLEILQLNSNMLRGS 360 (820)
Q Consensus 290 ~~l~~L~~L~Ls~n~l~~i-----p~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~~~~~~L~~L~L~~n~l~~~ 360 (820)
+.-+.|+++..++|++..- ...|...+.|+.+.++.|.|.... ...|..++ +|++|||..|-++..
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~-----~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP-----HLEVLDLRDNTFTLE 228 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC-----cceeeecccchhhhH
Confidence 3456777888887777632 344677778888888888775432 23344444 788888888777532
Q ss_pred CCC-----CcCcCCCcEEecCCCcccEEEccCCcccccccccc-cCCCCCCEEecCCCcCccc---cCHHHhhcCCCCCE
Q 045139 361 LPD-----ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSI-GQLSQLELLDVASNSLKGM---ITEAHLSNLSRLTY 431 (820)
Q Consensus 361 ~p~-----~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~---~~~~~l~~l~~L~~ 431 (820)
... +..+++|++|++++|.++ ... ...+...+ ...++|++|.+.+|.|+.. +-.......+.|+.
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~-----~~G-a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~k 302 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLE-----NEG-AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEK 302 (382)
T ss_pred HHHHHHHHhcccchheeecccccccc-----ccc-HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHH
Confidence 211 445666776666655443 110 00111112 2357888888888888742 11123455778888
Q ss_pred EeCcCCcc
Q 045139 432 LDLSHNSL 439 (820)
Q Consensus 432 L~Ls~n~l 439 (820)
|+|++|.+
T Consensus 303 LnLngN~l 310 (382)
T KOG1909|consen 303 LNLNGNRL 310 (382)
T ss_pred hcCCcccc
Confidence 88888877
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=3.2e-10 Score=125.20 Aligned_cols=214 Identities=26% Similarity=0.285 Sum_probs=123.1
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
.++.+.+..|.+. .+-..+..+++|..|++.+|+|.. +...+..+++|++|++++|.|+... .+..++.|+.|+++
T Consensus 73 ~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence 5566667777766 233446677778888888888773 3333666777888888888887553 35666778888888
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCC-cccCCCCCCCEEeCcCCCCccccchhccccccccccccCCccccc
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVP-VQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRY 730 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~ 730 (820)
+|.|+ .++. +. .++.|+.+++++|++...-+ . ...+.+++.+++.+|.+..... +..+..+.......+.+
T Consensus 149 ~N~i~-~~~~-~~-~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i-- 220 (414)
T KOG0531|consen 149 GNLIS-DISG-LE-SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKI-- 220 (414)
T ss_pred cCcch-hccC-Cc-cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccc--
Confidence 88876 3332 22 47778888888888774433 2 4667777777888887752211 11111110000000000
Q ss_pred CCccccccCceeEEeeccccccccccC--ceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCC
Q 045139 731 PLRTDYYNDHALLVWKRKDSEYRNTLG--LVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLN 807 (820)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 807 (820)
.... -...+. +|+.+++++|++. .++ .+..+..+..|++++|++... ..+...+.+.
T Consensus 221 ------------~~~~-----~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~ 280 (414)
T KOG0531|consen 221 ------------SKLE-----GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLS 280 (414)
T ss_pred ------------eecc-----CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHH
Confidence 0000 000011 2466777777776 553 666666777777777776643 2234455555
Q ss_pred eEeCCCCcCc
Q 045139 808 SLDLSKNMLM 817 (820)
Q Consensus 808 ~LdLs~N~l~ 817 (820)
.+.++.|++.
T Consensus 281 ~~~~~~~~~~ 290 (414)
T KOG0531|consen 281 ELWLNDNKLA 290 (414)
T ss_pred HhccCcchhc
Confidence 6666666554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=6e-09 Score=80.49 Aligned_cols=60 Identities=40% Similarity=0.486 Sum_probs=54.6
Q ss_pred CceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcC
Q 045139 757 GLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816 (820)
Q Consensus 757 ~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l 816 (820)
|+|+.|++++|+++...+ .|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 457999999999995555 889999999999999999988888999999999999999986
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.71 E-value=1.3e-08 Score=78.68 Aligned_cols=58 Identities=33% Similarity=0.449 Sum_probs=26.3
Q ss_pred CcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCc
Q 045139 597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNK 654 (820)
Q Consensus 597 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 654 (820)
|++|++++|+++...+..|..+++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4444444444443333444444444444444444444444444444444444444443
No 41
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.66 E-value=2.9e-08 Score=69.94 Aligned_cols=41 Identities=49% Similarity=0.946 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhccCC-CCCCCCCCCCCCCCCCCCcccCceEec
Q 045139 43 ERERQALLMFKQGLI-DEYGHLSSWGNEDDKKDCCKWRGVSCS 84 (820)
Q Consensus 43 ~~~~~~l~~~~~~~~-~~~~~~~~W~~~~~~~~~c~w~gv~c~ 84 (820)
++|++||++||+++. +|.+.+.+|... ...+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~-~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPS-SDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCc-CCCCCeeeccEEeC
Confidence 579999999999998 577899999841 12799999999995
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=4e-09 Score=116.45 Aligned_cols=199 Identities=31% Similarity=0.371 Sum_probs=112.3
Q ss_pred CCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCC
Q 045139 113 GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLE 192 (820)
Q Consensus 113 ~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~ 192 (820)
.+..++.+++..|.+.. +-..++.+++|++|++.+|.|. .+...+..+++|++|++++| ....+..+..++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N---~I~~i~~l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFN---KITKLEGLSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchh-hcccchhhhhcchheecccc---ccccccchhhccchh
Confidence 44555555566665533 2233555666666666666666 33323555666666666666 334444555555566
Q ss_pred eeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcE
Q 045139 193 YVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVY 272 (820)
Q Consensus 193 ~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~ 272 (820)
.|++.+|.+.... .+..++.|+.+++++|.+....+. ....+ .+++.+++.+|.+...-..... . .+..
T Consensus 144 ~L~l~~N~i~~~~----~~~~l~~L~~l~l~~n~i~~ie~~---~~~~~-~~l~~l~l~~n~i~~i~~~~~~--~-~l~~ 212 (414)
T KOG0531|consen 144 ELNLSGNLISDIS----GLESLKSLKLLDLSYNRIVDIEND---ELSEL-ISLEELDLGGNSIREIEGLDLL--K-KLVL 212 (414)
T ss_pred hheeccCcchhcc----CCccchhhhcccCCcchhhhhhhh---hhhhc-cchHHHhccCCchhcccchHHH--H-HHHH
Confidence 6666666665532 233466677777777766554331 01233 6667777777766532221111 1 3444
Q ss_pred EEccCCcccCCCCCCCCCCCCC--CCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCc
Q 045139 273 LDLSSNKLQGPIPDSAFPNPTS--LSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDL 331 (820)
Q Consensus 273 L~Ls~n~l~g~ip~~~l~~l~~--L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~ 331 (820)
+++..|.++ .+.. +..+.. |+.+++++|.+..++..+..+..+..+++..|++...
T Consensus 213 ~~l~~n~i~-~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 213 LSLLDNKIS-KLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred hhcccccce-eccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc
Confidence 467777666 3322 223333 7777777777776666667777777777777777654
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.56 E-value=1.8e-09 Score=117.16 Aligned_cols=179 Identities=25% Similarity=0.317 Sum_probs=123.2
Q ss_pred CcccccCCCCcEEEcCCCeeeecCCCCcccc-cCCcEEeccCCccc----------ccCCcchhcCCCCCEEECCCCcCc
Q 045139 588 PNCSKNWQKLTVLNLANNKFSGKIPDSMDFN-CMMLSLHLRNNSFI----------GELPSSVKSFTQLTVLDLGHNKIS 656 (820)
Q Consensus 588 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~----------~~~p~~l~~l~~L~~L~Ls~N~l~ 656 (820)
|-.+..+.+|++|.+.++.+.. ...+..+ ..|+.|-. .|.+. |.+..++. .-.|...+.++|++.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence 5567778889999999988763 1122222 22333322 22221 11111111 135788899999997
Q ss_pred cccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccch-hccccccccccccCCcccccCCccc
Q 045139 657 GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQ-CLNNLTAMTANKSSNAMIRYPLRTD 735 (820)
Q Consensus 657 ~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~~~~~~~~~~~~~~~~ 735 (820)
....++. -++.|+.|+|++|+++.. +.+..++.|+.|||++|.+. .+|. ....+. |
T Consensus 178 -~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L----------------- 234 (1096)
T KOG1859|consen 178 -LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-L----------------- 234 (1096)
T ss_pred -hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-h-----------------
Confidence 6666665 688999999999999854 37888999999999999987 4443 112221 3
Q ss_pred cccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCc-ccccCCCCCCeEeCCCC
Q 045139 736 YYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIP-SKIGGLTLLNSLDLSKN 814 (820)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~LdLs~N 814 (820)
..|.+++|.++ ..-++.++++|+.||+|+|-|.+.-- .-+..|..|+.|+|.+|
T Consensus 235 ------------------------~~L~lrnN~l~-tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 235 ------------------------QLLNLRNNALT-TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred ------------------------eeeeecccHHH-hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 78999999998 66688899999999999998875422 22456788899999999
Q ss_pred cCcc
Q 045139 815 MLMR 818 (820)
Q Consensus 815 ~l~g 818 (820)
++.+
T Consensus 290 Pl~c 293 (1096)
T KOG1859|consen 290 PLCC 293 (1096)
T ss_pred cccc
Confidence 9854
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=3.3e-08 Score=96.64 Aligned_cols=195 Identities=24% Similarity=0.296 Sum_probs=105.7
Q ss_pred CCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhcc
Q 045139 187 QLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNS 266 (820)
Q Consensus 187 ~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 266 (820)
..+.++++|+.+|.++.+.++...+.++|.|++|+++.|.+...+.... ... .+|++|-|.+..+.-.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~-~nl~~lVLNgT~L~w~-------- 136 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPL-KNLRVLVLNGTGLSWT-------- 136 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccc-cceEEEEEcCCCCChh--------
Confidence 3567778888888999888888888999999999999999887655211 122 4455555544433321
Q ss_pred CCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCC
Q 045139 267 SSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDT 346 (820)
Q Consensus 267 ~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~ 346 (820)
-....+..++.+++|+++.|.+ +.+++..+.++...|... .+. ..+.
T Consensus 137 -----------------~~~s~l~~lP~vtelHmS~N~~-------------rq~n~Dd~c~e~~s~~v~-tlh--~~~c 183 (418)
T KOG2982|consen 137 -----------------QSTSSLDDLPKVTELHMSDNSL-------------RQLNLDDNCIEDWSTEVL-TLH--QLPC 183 (418)
T ss_pred -----------------hhhhhhhcchhhhhhhhccchh-------------hhhccccccccccchhhh-hhh--cCCc
Confidence 1122234455555555555422 222223333322221100 000 0001
Q ss_pred ccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcC
Q 045139 347 LEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNL 426 (820)
Q Consensus 347 L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 426 (820)
+..+.++-|++.. .++++..+.+..+.++++ +. .+....++.+..|+|+.|+|.....-..+..+
T Consensus 184 ~~~~w~~~~~l~r------~Fpnv~sv~v~e~PlK~~--s~-------ek~se~~p~~~~LnL~~~~idswasvD~Ln~f 248 (418)
T KOG2982|consen 184 LEQLWLNKNKLSR------IFPNVNSVFVCEGPLKTE--SS-------EKGSEPFPSLSCLNLGANNIDSWASVDALNGF 248 (418)
T ss_pred HHHHHHHHHhHHh------hcccchheeeecCcccch--hh-------cccCCCCCcchhhhhcccccccHHHHHHHcCC
Confidence 1122222222222 234455554444444421 11 22344455666788888888776555668888
Q ss_pred CCCCEEeCcCCcccc
Q 045139 427 SRLTYLDLSHNSLIL 441 (820)
Q Consensus 427 ~~L~~L~Ls~n~l~~ 441 (820)
+.|..|.++++++..
T Consensus 249 ~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 249 PQLVDLRVSENPLSD 263 (418)
T ss_pred chhheeeccCCcccc
Confidence 888888888888754
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.45 E-value=2.6e-07 Score=109.04 Aligned_cols=108 Identities=29% Similarity=0.370 Sum_probs=66.4
Q ss_pred CCccEEECcCCCC-CCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEE
Q 045139 243 RSLAHLDLSLNDV-SNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRAL 321 (820)
Q Consensus 243 ~~L~~L~Ls~n~l-~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L 321 (820)
+.|+.|-+..|.- ...++..++...+.|++|||++|.--+.+|.. ++.+-+|++|++++..++.+|.++++++.|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 4566666666642 23444555555556777777766544566666 666777777777777777777777777777777
Q ss_pred EcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCC
Q 045139 322 YQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNM 356 (820)
Q Consensus 322 ~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~ 356 (820)
++..+.-...+|.....+. +|++|.+..-.
T Consensus 624 nl~~~~~l~~~~~i~~~L~-----~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQ-----SLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcc-----cccEEEeeccc
Confidence 7666655544555555555 66666665543
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=9.7e-09 Score=100.34 Aligned_cols=182 Identities=21% Similarity=0.218 Sum_probs=97.4
Q ss_pred CCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeee
Q 045139 116 HLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVR 195 (820)
Q Consensus 116 ~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~ 195 (820)
+|++||||+..++...+-.-+..+.+|+-|.|.++++...+-..+++-.+|+.|+++.+..+..-.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~-------------- 251 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA-------------- 251 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH--------------
Confidence 477777777776554444455667777777777777777776677777777777777663222211
Q ss_pred CCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCC--CCCchhhhhhccCCCCcEE
Q 045139 196 LNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLND--VSNSVYYWLFNSSSSLVYL 273 (820)
Q Consensus 196 l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~L~~L 273 (820)
..-.+.+++.|.+|++++|.+....-. ..+....++|+.|++++.. +...-.+.+...+++|.+|
T Consensus 252 -----------~~ll~~scs~L~~LNlsWc~l~~~~Vt--v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 252 -----------LQLLLSSCSRLDELNLSWCFLFTEKVT--VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred -----------HHHHHHhhhhHhhcCchHhhccchhhh--HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 223344555555555555544432211 1222333556666666542 2222223334444566666
Q ss_pred EccCCc-ccCCCCCCCCCCCCCCCEEECCCCCCCCcch---hhhccCCCcEEEcCCC
Q 045139 274 DLSSNK-LQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK---SFRNLCRLRALYQDSN 326 (820)
Q Consensus 274 ~Ls~n~-l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~---~l~~l~~L~~L~L~~n 326 (820)
||++|. ++...-.. |-+++.|++|.++.|..- +|. .+...+.|.+|++.++
T Consensus 319 DLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDI-IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccccccCchHHHH-HHhcchheeeehhhhcCC-ChHHeeeeccCcceEEEEeccc
Confidence 666654 22111111 445666666666666432 122 2556667777776554
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.36 E-value=2.9e-08 Score=85.94 Aligned_cols=73 Identities=22% Similarity=0.389 Sum_probs=42.4
Q ss_pred CCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139 643 TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM 718 (820)
Q Consensus 643 ~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 718 (820)
..|+..+|++|.+. .+|..+....+.++.|++++|+++ .+|..+..++.|+.|+++.|++. ..|..+..+.++
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 44555566666665 455544444556666666666666 55666666666666666666665 445544445444
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.26 E-value=4.1e-08 Score=106.91 Aligned_cols=179 Identities=30% Similarity=0.270 Sum_probs=119.6
Q ss_pred ccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCc------c---cCCCCCCCCCCCCCCCEEECCCCCCC
Q 045139 236 VSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNK------L---QGPIPDSAFPNPTSLSYLDLSNNQLV 306 (820)
Q Consensus 236 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~------l---~g~ip~~~l~~l~~L~~L~Ls~n~l~ 306 (820)
-.+... ++|++|.+.++.+.. ...+..+...|++|--++.- + .|.+..+ + ....|...+.++|.++
T Consensus 103 i~ifpF-~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns-~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 103 ISIFPF-RSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS-P-VWNKLATASFSYNRLV 177 (1096)
T ss_pred ceeccc-cceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc-h-hhhhHhhhhcchhhHH
Confidence 345555 899999999998763 22222233345555333210 0 1222222 1 1235778888899998
Q ss_pred CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCC--cCcCCCcEEecCCCcccEEE
Q 045139 307 SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDI--TLFSSLKELHLYDNMLDVLY 384 (820)
Q Consensus 307 ~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~--~~l~~L~~L~l~~n~L~~L~ 384 (820)
.+..++.-++.|+.|+|++|+++... .+..++ +|++|||++|.+. .+|.+ ..+. |+.|.+++|.+++|
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~-----~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL- 247 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLP-----KLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL- 247 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcc-----cccccccccchhc-cccccchhhhh-heeeeecccHHHhh-
Confidence 88888888899999999999998754 566666 8999999999887 45542 2222 66665555554422
Q ss_pred ccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccc
Q 045139 385 LNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLI 440 (820)
Q Consensus 385 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~ 440 (820)
..+.++.+|+.||++.|-+.+.-.-..+..+..|+.|.|.+|++-
T Consensus 248 -----------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 -----------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -----------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 257788889999999998877544445677788888999999873
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.9e-08 Score=95.51 Aligned_cols=179 Identities=23% Similarity=0.247 Sum_probs=113.9
Q ss_pred CCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCC-CCC--cchhhhccCCCc
Q 045139 243 RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQ-LVS--VPKSFRNLCRLR 319 (820)
Q Consensus 243 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~-l~~--ip~~l~~l~~L~ 319 (820)
+.|+++||+...++..-...+...+.+|+.|.+.++++.+.|-.. ++.-.+|+.|+++.+. +++ +.--+.+++.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 568999999988886655555555568999999999998877766 7788899999998864 553 333478899999
Q ss_pred EEEcCCCCCCCcchh-hhhhcccCCcCCccEEEcCCCCCc---ccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccc
Q 045139 320 ALYQDSNNLTDLLPN-LFLKLSNCSRDTLEILQLNSNMLR---GSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTL 394 (820)
Q Consensus 320 ~L~L~~n~l~~~~~~-~~~~l~~~~~~~L~~L~L~~n~l~---~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~ 394 (820)
.|+++.|.+....-. .+.... ++|..|+++++.-. ..+.. ...+++|.+|+++++ +.++...
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~his----e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~---------v~l~~~~ 330 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHIS----ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS---------VMLKNDC 330 (419)
T ss_pred hcCchHhhccchhhhHHHhhhc----hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc---------cccCchH
Confidence 999998877654322 222333 27888888876421 11111 345566666655542 2233333
Q ss_pred cccccCCCCCCEEecCCCcCccccCHH--HhhcCCCCCEEeCcCC
Q 045139 395 TKSIGQLSQLELLDVASNSLKGMITEA--HLSNLSRLTYLDLSHN 437 (820)
Q Consensus 395 ~~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~l~~L~~L~Ls~n 437 (820)
...|..++.|++|.++.|.. .+|.. .+...|.|.+|++.++
T Consensus 331 ~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 331 FQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 34555666777777766653 23321 2345566666666554
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=2.7e-07 Score=90.39 Aligned_cols=193 Identities=17% Similarity=0.091 Sum_probs=102.1
Q ss_pred cCCCCCCEEECcCCCCCCc-ccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCC
Q 045139 112 IGLQHLNYLNMKYNDFGGK-QIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSF 190 (820)
Q Consensus 112 ~~l~~L~~L~Ls~n~l~~~-~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 190 (820)
...++++.|||.+|.++.- .+-.-+.++++|++|+|+.|.+...|-..=..+.+|++|-|.+....-...-..+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 4567899999999998752 133445689999999999998885443211356788888887762222222234455666
Q ss_pred CCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCch-hhhhhccCCC
Q 045139 191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSV-YYWLFNSSSS 269 (820)
Q Consensus 191 L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~-~~~~~~~~~~ 269 (820)
+++|+++.|.+... .+..+.++. ..+.++.+..-.|...--. -..+....++
T Consensus 148 vtelHmS~N~~rq~----------------n~Dd~c~e~-----------~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 148 VTELHMSDNSLRQL----------------NLDDNCIED-----------WSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred hhhhhhccchhhhh----------------ccccccccc-----------cchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 66666665532211 111111111 1122333333222111000 0011223345
Q ss_pred CcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCc--chhhhccCCCcEEEcCCCCCCCc
Q 045139 270 LVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV--PKSFRNLCRLRALYQDSNNLTDL 331 (820)
Q Consensus 270 L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~i--p~~l~~l~~L~~L~L~~n~l~~~ 331 (820)
+..+-+..|.+...-....+..++.+..|+|+.++|.+. -+.+.++++|..|.++++.+...
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 666666666554332222244555666677777766632 23466677777777777766543
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=1.5e-07 Score=81.67 Aligned_cols=135 Identities=21% Similarity=0.283 Sum_probs=85.7
Q ss_pred cccEEEccCCccccccCccccc---CCCCcEEEcCCCeeeecCCCCc-ccccCCcEEeccCCcccccCCcchhcCCCCCE
Q 045139 572 HFRYLDLSDNLLSGELPNCSKN---WQKLTVLNLANNKFSGKIPDSM-DFNCMMLSLHLRNNSFIGELPSSVKSFTQLTV 647 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~---l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 647 (820)
.+..++|+.+.+- .+++.... ...|+..+|++|.+.. .|..| ...+.++.|++++|.|+ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 4556777777764 45544433 3456666888888874 44444 33457777778888777 56777777778888
Q ss_pred EECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhc
Q 045139 648 LDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCL 712 (820)
Q Consensus 648 L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 712 (820)
|+++.|++. ..|..+. .+.++-+|+..+|.+. .+|..+.--+..-..++.++++.+.-|..+
T Consensus 105 lNl~~N~l~-~~p~vi~-~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIA-PLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred cccccCccc-cchHHHH-HHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence 888888776 6677776 4777777777777766 455443322333334556666666555433
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.01 E-value=1.4e-06 Score=84.45 Aligned_cols=204 Identities=19% Similarity=0.214 Sum_probs=94.3
Q ss_pred ccCCCCCCEEeccCCCCCCCCCc----cCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHh
Q 045139 136 IGSLKNIRHLDLSNAGFTGRVPY----QLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVV 211 (820)
Q Consensus 136 i~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l 211 (820)
+..+..++.++||+|.|...-.. .|.+-.+|+..+++.-+. ......+. +...-+...+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ft--gr~kde~~---------------~~L~~Ll~aL 88 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFT--GRDKDELY---------------SNLVMLLKAL 88 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhh--cccHHHHH---------------HHHHHHHHHH
Confidence 34466777777777777643332 233445566665554310 00000000 0000123455
Q ss_pred CCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCC----chhhhhhc--------cCCCCcEEEccCCc
Q 045139 212 SQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSN----SVYYWLFN--------SSSSLVYLDLSSNK 279 (820)
Q Consensus 212 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~----~~~~~~~~--------~~~~L~~L~Ls~n~ 279 (820)
.+||+|+..+||.|-+....|..+..+....+.|++|.+++|.+.- .+...++. ..|.|+......|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 6666666666666666555443333322222566666666665431 12212211 11356666666665
Q ss_pred ccCCCCCC----CCCCCCCCCEEECCCCCCC--Cc----chhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccE
Q 045139 280 LQGPIPDS----AFPNPTSLSYLDLSNNQLV--SV----PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEI 349 (820)
Q Consensus 280 l~g~ip~~----~l~~l~~L~~L~Ls~n~l~--~i----p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~ 349 (820)
+. ..|.. .+..-..|+++.+..|.|. .+ -..+..+.+|+.|++.+|.++-.....++..- |.|+.|+.
T Consensus 169 le-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al-~~W~~lrE 246 (388)
T COG5238 169 LE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL-CEWNLLRE 246 (388)
T ss_pred hc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh-cccchhhh
Confidence 54 22211 1222245566666666555 11 11234555666666666666554443333322 33445555
Q ss_pred EEcCCCCCc
Q 045139 350 LQLNSNMLR 358 (820)
Q Consensus 350 L~L~~n~l~ 358 (820)
|.+..|-++
T Consensus 247 L~lnDClls 255 (388)
T COG5238 247 LRLNDCLLS 255 (388)
T ss_pred ccccchhhc
Confidence 555555544
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.95 E-value=3.8e-07 Score=93.70 Aligned_cols=85 Identities=26% Similarity=0.232 Sum_probs=41.9
Q ss_pred CCccEEECcCC-CCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCC-CCCCCCCEEECCCCCCC---CcchhhhccCC
Q 045139 243 RSLAHLDLSLN-DVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAF-PNPTSLSYLDLSNNQLV---SVPKSFRNLCR 317 (820)
Q Consensus 243 ~~L~~L~Ls~n-~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l-~~l~~L~~L~Ls~n~l~---~ip~~l~~l~~ 317 (820)
..|++++.+++ .+++..-..++...++|+.|.++.++--+..-...+ .+++.|+.+++..+... ++-..=.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 56666666654 333344445555555666666666652111111101 24556666666665443 12222235556
Q ss_pred CcEEEcCCCC
Q 045139 318 LRALYQDSNN 327 (820)
Q Consensus 318 L~~L~L~~n~ 327 (820)
|+++.++++.
T Consensus 374 lr~lslshce 383 (483)
T KOG4341|consen 374 LRVLSLSHCE 383 (483)
T ss_pred hccCChhhhh
Confidence 6666666553
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.7e-05 Score=55.93 Aligned_cols=38 Identities=39% Similarity=0.580 Sum_probs=24.9
Q ss_pred CCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCC
Q 045139 293 TSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTD 330 (820)
Q Consensus 293 ~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~ 330 (820)
++|++|++++|+|+.+|+.++++++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 35667777777777776667777777777777777664
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=9.9e-06 Score=57.10 Aligned_cols=35 Identities=37% Similarity=0.673 Sum_probs=18.7
Q ss_pred ceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccc
Q 045139 758 LVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT 793 (820)
Q Consensus 758 ~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~ 793 (820)
+|++|++++|+++ .+| .+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455566666665 444 3555566666666666555
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=5.4e-06 Score=95.58 Aligned_cols=158 Identities=21% Similarity=0.218 Sum_probs=92.9
Q ss_pred CCCCEEECcCCCCCCcccCcccc-CCCCCCEEeccCCCCCCC-CCccCCCCCCCcEEeCCCCccccccchhhccCCCCCC
Q 045139 115 QHLNYLNMKYNDFGGKQIPAFIG-SLKNIRHLDLSNAGFTGR-VPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLE 192 (820)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~i~-~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~ 192 (820)
.+|++||+++...-....|..++ .|+.|+.|.+++-.+... .-....++++|.+||+|+. -...+..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T---nI~nl~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT---NISNLSGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC---CccCcHHHhccccHH
Confidence 46777777775443333444444 567777777776555422 2233456777777777766 233346677777777
Q ss_pred eeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCC--ccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCC
Q 045139 193 YVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVI--ASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL 270 (820)
Q Consensus 193 ~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 270 (820)
.|.+.+-.+..... ...+.++++|++||+|........ ...+.+.+..+|+|+.||.|+..+.+.+-+.+.+..++|
T Consensus 199 ~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 199 VLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHhccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 77777766665433 244566777777777765543322 111222233347788888887777776666665555566
Q ss_pred cEEEcc
Q 045139 271 VYLDLS 276 (820)
Q Consensus 271 ~~L~Ls 276 (820)
+.+..-
T Consensus 278 ~~i~~~ 283 (699)
T KOG3665|consen 278 QQIAAL 283 (699)
T ss_pred hhhhhh
Confidence 555443
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.72 E-value=2.4e-05 Score=76.09 Aligned_cols=140 Identities=21% Similarity=0.225 Sum_probs=69.7
Q ss_pred CCCCCeeeCCCccCCCC--ccHHHHhCCCCCCCEEEcCCCCCCC---CCccc----cccccCCcCCccEEECcCCCCCCc
Q 045139 188 LSFLEYVRLNQVNLGEA--TDWLQVVSQLPSLTELQLRGCNLPS---VIASS----SVSFSNSSRSLAHLDLSLNDVSNS 258 (820)
Q Consensus 188 l~~L~~L~l~~n~l~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~---~~~~~----~~~l~~~~~~L~~L~Ls~n~l~~~ 258 (820)
+..+..+++++|.+..- ..+...+++-.+|+..+++.-.... .++.. ...+.++ +.|+..+||.|.|.-.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkc-p~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKC-PRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcC-CcceeeeccccccCcc
Confidence 44444444444454432 2344455556666666655432111 11111 1233444 7777777777777666
Q ss_pred hhhhhhc---cCCCCcEEEccCCcccCCCCCCCC-------------CCCCCCCEEECCCCCCCCcch-----hhhccCC
Q 045139 259 VYYWLFN---SSSSLVYLDLSSNKLQGPIPDSAF-------------PNPTSLSYLDLSNNQLVSVPK-----SFRNLCR 317 (820)
Q Consensus 259 ~~~~~~~---~~~~L~~L~Ls~n~l~g~ip~~~l-------------~~l~~L~~L~Ls~n~l~~ip~-----~l~~l~~ 317 (820)
.|+.+.. ....|++|.+++|.+. .+..+-+ .+-+.|+......|++...|. .+..-..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 5554432 2236777777777664 3322212 133556666666666553332 1222245
Q ss_pred CcEEEcCCCCCC
Q 045139 318 LRALYQDSNNLT 329 (820)
Q Consensus 318 L~~L~L~~n~l~ 329 (820)
|+++.+..|.|.
T Consensus 187 lk~vki~qNgIr 198 (388)
T COG5238 187 LKEVKIQQNGIR 198 (388)
T ss_pred ceeEEeeecCcC
Confidence 555555555554
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.72 E-value=2.9e-06 Score=87.45 Aligned_cols=264 Identities=22% Similarity=0.187 Sum_probs=120.6
Q ss_pred HHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCC-CCCCchhhhhhccCCCCcEEEccCCc-ccCCC
Q 045139 207 WLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLN-DVSNSVYYWLFNSSSSLVYLDLSSNK-LQGPI 284 (820)
Q Consensus 207 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~L~~L~Ls~n~-l~g~i 284 (820)
.-....++|++++|.+.+|..... ..+..+++.+++|+++++..+ .++......+.+.+++|++|+++++. ++|.-
T Consensus 156 lrt~~~~CpnIehL~l~gc~~iTd--~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 156 LRTFASNCPNIEHLALYGCKKITD--SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred hhHHhhhCCchhhhhhhcceeccH--HHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 333445566666666666642111 112445555577777777773 55555555566666678888877764 33311
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCc---chhhhccCCCcEEEcCCC-CCCCcchhhhhhcccCCcCCccEEEcCCCCCccc
Q 045139 285 PDSAFPNPTSLSYLDLSNNQLVSV---PKSFRNLCRLRALYQDSN-NLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGS 360 (820)
Q Consensus 285 p~~~l~~l~~L~~L~Ls~n~l~~i---p~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~ 360 (820)
-...+.+++.++.+.+.+|.=... -..=..+..+.++++..+ .++...-..+.... .+|+.++.+++...+.
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c----~~lq~l~~s~~t~~~d 309 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC----HALQVLCYSSCTDITD 309 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh----hHhhhhcccCCCCCch
Confidence 112244566666666665432211 111123334445554443 33332211111111 1566776666654322
Q ss_pred CCC---CcCcCCCcEEecCCCcccEEEccCCcccccccccc-cCCCCCCEEecCCCcCccccCH-HHhhcCCCCCEEeCc
Q 045139 361 LPD---ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSI-GQLSQLELLDVASNSLKGMITE-AHLSNLSRLTYLDLS 435 (820)
Q Consensus 361 ~p~---~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~Ls 435 (820)
.+- ..+..+|+.+.+..++- ++...++ .+ .+++.|+.+++..+.....-.- ..-.+++.|+.+.++
T Consensus 310 ~~l~aLg~~~~~L~~l~l~~c~~----fsd~~ft-----~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsls 380 (483)
T KOG4341|consen 310 EVLWALGQHCHNLQVLELSGCQQ----FSDRGFT-----MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLS 380 (483)
T ss_pred HHHHHHhcCCCceEEEeccccch----hhhhhhh-----hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChh
Confidence 221 23455666665554431 1222222 11 2355666666666544321100 012345666666666
Q ss_pred CCcccccc-----CCCCcCccccceeecccccCCC-CCchhhhcCCCccEEecCCC
Q 045139 436 HNSLILNF-----GSGWVPSFELNIIRLGACKQGP-QFPKWLQTQNKFSELDVSAA 485 (820)
Q Consensus 436 ~n~l~~~~-----~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n 485 (820)
++...... ...-.....++.+.+++|.... ..-..+..+++|+.+++.++
T Consensus 381 hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 381 HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 66543221 1111222334444444443321 22233444455555555444
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.00024 Score=75.63 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=66.7
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+++.|++++|.++ .+|. -.++|++|.++++.-...+|+.+ .++|++|++++|.....+|. +|+.|+++
T Consensus 53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~ 120 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIK 120 (426)
T ss_pred CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeC
Confidence 6788888888777 4452 12468888888755434566554 25788888888833334553 46777777
Q ss_pred CCcCccccCcchhcCCCCccEEEcCccc-cc-ccCCcccCCCCCCCEEeCcCCCCc
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNN-FH-GRVPVQVCHLQRIQVLDLSQNNIS 705 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~-l~-~~~p~~l~~l~~L~~L~Ls~N~l~ 705 (820)
++... .++. -.++|+.|.+.+++ .. ..+|.. -.++|++|++++|...
T Consensus 121 ~n~~~-~L~~----LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 121 GSATD-SIKN----VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI 169 (426)
T ss_pred CCCCc-cccc----CcchHhheeccccccccccccccc--cCCcccEEEecCCCcc
Confidence 66543 2211 12356667665433 11 011111 1257888888887754
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.58 E-value=0.00019 Score=76.35 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=47.1
Q ss_pred cccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCC-cCccccCcchhcCCCC
Q 045139 591 SKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHN-KISGIIPAWIGDSLPD 669 (820)
Q Consensus 591 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~~l~~ 669 (820)
+..+.+++.|++++|.++ .+|. -..+|++|.+++|.-...+|..+. ++|+.|++++| .+. .+|. +
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~-------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE-------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc-------c
Confidence 445678888888888777 4552 234588888877655456665442 46777777777 443 3332 3
Q ss_pred ccEEEcCcccc
Q 045139 670 LVVLSLRSNNF 680 (820)
Q Consensus 670 L~~L~L~~N~l 680 (820)
|+.|+++.+..
T Consensus 114 Le~L~L~~n~~ 124 (426)
T PRK15386 114 VRSLEIKGSAT 124 (426)
T ss_pred cceEEeCCCCC
Confidence 55566655543
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=3.4e-05 Score=89.09 Aligned_cols=160 Identities=18% Similarity=0.181 Sum_probs=81.1
Q ss_pred CCccEEECcCCC-CCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEE
Q 045139 243 RSLAHLDLSLND-VSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRAL 321 (820)
Q Consensus 243 ~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L 321 (820)
.+|++||+++.. +....|..++...|+|+.|.+++-.+...=-...+.++++|..||+|+.+++.+ .+++++++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 445555555542 233445555666666666666665443110111244566677777777766666 556666777666
Q ss_pred EcCCCCCCC-cchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccC
Q 045139 322 YQDSNNLTD-LLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQ 400 (820)
Q Consensus 322 ~L~~n~l~~-~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~ 400 (820)
.+.+=.+.. ..-..+.+++ +|+.||+|..+..... .+....-+.-..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~-----~L~vLDIS~~~~~~~~---------------------------~ii~qYlec~~~ 248 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLK-----KLRVLDISRDKNNDDT---------------------------KIIEQYLECGMV 248 (699)
T ss_pred hccCCCCCchhhHHHHhccc-----CCCeeeccccccccch---------------------------HHHHHHHHhccc
Confidence 665544433 1112233343 4555555444332110 011111122234
Q ss_pred CCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCc
Q 045139 401 LSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLS 435 (820)
Q Consensus 401 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls 435 (820)
+|.|+.||.++..+.+.+-+..+..-|+|+.+.+-
T Consensus 249 LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred CccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 66777787777777665544445555666555443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=0.00018 Score=67.38 Aligned_cols=80 Identities=28% Similarity=0.401 Sum_probs=35.7
Q ss_pred CCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcc--cCCCCcCcCCCcE
Q 045139 295 LSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRG--SLPDITLFSSLKE 372 (820)
Q Consensus 295 L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~--~~p~~~~l~~L~~ 372 (820)
...+||++|.+..++. |..++.|.+|.+.+|+|+.+.|.--..++ +|+.|.|.+|.+.. .+..+..+|.|++
T Consensus 44 ~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p-----~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLP-----NLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhcc-----ccceEEecCcchhhhhhcchhccCCccce
Confidence 3444444444443321 34444555555555555544443322333 45555555555442 1222444555555
Q ss_pred EecCCCcc
Q 045139 373 LHLYDNML 380 (820)
Q Consensus 373 L~l~~n~L 380 (820)
|.+-+|..
T Consensus 118 Ltll~Npv 125 (233)
T KOG1644|consen 118 LTLLGNPV 125 (233)
T ss_pred eeecCCch
Confidence 54444433
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.27 E-value=0.00027 Score=66.14 Aligned_cols=85 Identities=22% Similarity=0.172 Sum_probs=54.2
Q ss_pred CCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeee
Q 045139 116 HLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVR 195 (820)
Q Consensus 116 ~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~ 195 (820)
....+||++|.+.. + ..+..+.+|.+|.|++|.|+..-|.--.-+++|+.|.|.+|.....+.+..+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45678888888754 2 34667888999999999998555543344677888888888333333344444455555555
Q ss_pred CCCccCCC
Q 045139 196 LNQVNLGE 203 (820)
Q Consensus 196 l~~n~l~~ 203 (820)
+-+|.+..
T Consensus 120 ll~Npv~~ 127 (233)
T KOG1644|consen 120 LLGNPVEH 127 (233)
T ss_pred ecCCchhc
Confidence 54444433
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.22 E-value=0.00021 Score=69.88 Aligned_cols=113 Identities=21% Similarity=0.189 Sum_probs=66.1
Q ss_pred ccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCC--CCCCCCCccCCCCCCCcEEeCCCCccccccchhh
Q 045139 107 ISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNA--GFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEW 184 (820)
Q Consensus 107 i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 184 (820)
+..-.-.+..|+.|++.+..++.. ..+-.|++|++|.+|.| ++++.++.....+++|++|++++|..-....+..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 333333444555555555555432 23345678888888888 6666666666677888888888874333445555
Q ss_pred ccCCCCCCeeeCCCccCCCCccH-HHHhCCCCCCCEEEc
Q 045139 185 LSQLSFLEYVRLNQVNLGEATDW-LQVVSQLPSLTELQL 222 (820)
Q Consensus 185 l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~~L~~L~L 222 (820)
+..+.+|..|++..|........ -..+.-+++|+.|+-
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 66666666777766665543222 234445566666543
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.76 E-value=0.0053 Score=55.46 Aligned_cols=123 Identities=13% Similarity=0.153 Sum_probs=56.9
Q ss_pred cccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCC
Q 045139 589 NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLP 668 (820)
Q Consensus 589 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~ 668 (820)
.+|.++++|+.+.+.. .+...-..+|..+++|+.+.+.++ +.......|.++++++.+.+.. .+. .++...+..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 3566666777777764 455455556777767777777664 5555556677776777777765 333 33333333577
Q ss_pred CccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139 669 DLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM 718 (820)
Q Consensus 669 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 718 (820)
+|+.+++..+ +.......+.+. .|+.+.+.. .+...-..+|.+.++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 7777777655 443444556665 777777665 3333333455555443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=9.2e-05 Score=72.43 Aligned_cols=103 Identities=22% Similarity=0.195 Sum_probs=70.4
Q ss_pred CCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCe
Q 045139 114 LQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEY 193 (820)
Q Consensus 114 l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 193 (820)
+...++|+..++.+.++ ..+.+++.|++|.||-|.|+..- .+..|++|++|+|..|.......+..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 45667788888888764 23457888999999999888433 36788888888888885444556667778888888
Q ss_pred eeCCCccCCCC---ccHHHHhCCCCCCCEEE
Q 045139 194 VRLNQVNLGEA---TDWLQVVSQLPSLTELQ 221 (820)
Q Consensus 194 L~l~~n~l~~~---~~~~~~l~~l~~L~~L~ 221 (820)
|.|..|...+. ..-...+..+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88877765443 12233455566666554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.47 E-value=0.0017 Score=63.79 Aligned_cols=77 Identities=29% Similarity=0.308 Sum_probs=36.3
Q ss_pred CCccEEECcCC--CCCCchhhhhhccCCCCcEEEccCCcccC--CCCCCCCCCCCCCCEEECCCCCCCCcch----hhhc
Q 045139 243 RSLAHLDLSLN--DVSNSVYYWLFNSSSSLVYLDLSSNKLQG--PIPDSAFPNPTSLSYLDLSNNQLVSVPK----SFRN 314 (820)
Q Consensus 243 ~~L~~L~Ls~n--~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g--~ip~~~l~~l~~L~~L~Ls~n~l~~ip~----~l~~ 314 (820)
++|+.|.++.| ++.+.++.-.-.. ++|++|++++|++.. .+++ +..+.+|..|++.+|..+.+-+ .|.-
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~-P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKA-PNLKVLNLSGNKIKDLSTLRP--LKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred chhhhhcccCCcccccccceehhhhC-CceeEEeecCCccccccccch--hhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 55555666555 3333333222222 466666666666541 1111 3344555566666655553211 2444
Q ss_pred cCCCcEEE
Q 045139 315 LCRLRALY 322 (820)
Q Consensus 315 l~~L~~L~ 322 (820)
+++|++|+
T Consensus 142 l~~L~~LD 149 (260)
T KOG2739|consen 142 LPSLKYLD 149 (260)
T ss_pred hhhhcccc
Confidence 45555443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.0001 Score=72.10 Aligned_cols=57 Identities=23% Similarity=0.188 Sum_probs=25.2
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCccc
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFI 632 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 632 (820)
+.+.|++.++.++.. .....++.|++|.||-|+|+..- .+..|+.|++|+|..|.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc
Confidence 344555555555422 12334455555555555554222 2344444444444444443
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.40 E-value=0.0085 Score=54.10 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=67.1
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+++.+.+.. .+......+|.++++|+.+.+.++ +......+|..+++++.+.+.+ .+.......|..+++|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 688888875 566566778999999999999886 6656667888998999999976 5554556778889999999998
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQ 695 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 695 (820)
.+ +. .++.....+. .|+.+.+.. .+.......|.++++|+
T Consensus 90 ~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 90 SN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 76 55 4554444355 999999886 44445556777776663
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.89 E-value=0.0019 Score=73.45 Aligned_cols=137 Identities=25% Similarity=0.196 Sum_probs=68.8
Q ss_pred CCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCC-CCCCCCccccccccCCcCCccEEECcCCC-CCCchhhhhh
Q 045139 187 QLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGC-NLPSVIASSSVSFSNSSRSLAHLDLSLND-VSNSVYYWLF 264 (820)
Q Consensus 187 ~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~~ 264 (820)
.++.|+.+.+..+.-.....+......++.|++|+++++ ......+.....+...+++|+.++++... +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666665543332224455566777777777662 22221111111233333666777776665 5555555555
Q ss_pred ccCCCCcEEEccCCc-ccCCCCCCCCCCCCCCCEEECCCCCCC---CcchhhhccCCCcEEEc
Q 045139 265 NSSSSLVYLDLSSNK-LQGPIPDSAFPNPTSLSYLDLSNNQLV---SVPKSFRNLCRLRALYQ 323 (820)
Q Consensus 265 ~~~~~L~~L~Ls~n~-l~g~ip~~~l~~l~~L~~L~Ls~n~l~---~ip~~l~~l~~L~~L~L 323 (820)
..+++|++|.+.++. +++.--......++.|++|+++++... .+.....++++++.|.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 555567777766555 332211111334566677777666443 23333444555555443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.48 E-value=0.0045 Score=36.21 Aligned_cols=20 Identities=50% Similarity=0.634 Sum_probs=12.4
Q ss_pred CCEEeCCCCccccCCcccccC
Q 045139 782 LISLNLSKNSLTGPIPSKIGG 802 (820)
Q Consensus 782 L~~L~Ls~N~l~~~ip~~l~~ 802 (820)
|++|||++|+++ .+|++|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 566666666666 56655544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.12 E-value=0.0073 Score=35.30 Aligned_cols=17 Identities=65% Similarity=0.950 Sum_probs=7.5
Q ss_pred CcEEEccCCcccCCCCCC
Q 045139 270 LVYLDLSSNKLQGPIPDS 287 (820)
Q Consensus 270 L~~L~Ls~n~l~g~ip~~ 287 (820)
|++||+++|+++ .+|.+
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 344444444444 44443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.74 E-value=0.00054 Score=75.87 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=15.6
Q ss_pred ccccccCCCCCCEEecCCCcCcc
Q 045139 394 LTKSIGQLSQLELLDVASNSLKG 416 (820)
Q Consensus 394 ~~~~l~~l~~L~~L~L~~n~l~~ 416 (820)
+.+.+..++.++++.++.|.+..
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHhhhHHHHHhhcccCcccc
Confidence 34455566778888888887764
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.47 E-value=0.013 Score=66.65 Aligned_cols=115 Identities=25% Similarity=0.245 Sum_probs=73.6
Q ss_pred CCCCCCEEECcCCCC-CCcccCccccCCCCCCEEeccCC-CCCCCCC----ccCCCCCCCcEEeCCCCccccccchhhcc
Q 045139 113 GLQHLNYLNMKYNDF-GGKQIPAFIGSLKNIRHLDLSNA-GFTGRVP----YQLGNLTSLQYLDLSFNFDMLSKKLEWLS 186 (820)
Q Consensus 113 ~l~~L~~L~Ls~n~l-~~~~~p~~i~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~ 186 (820)
.++.|+.|.+.++.- ....+-+....+++|+.|+++++ ......+ .....+.+|++|+++++.......+..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 467888888877633 22112234567788888888873 2211111 23345688888888887434555555555
Q ss_pred C-CCCCCeeeCCCcc-CCCCccHHHHhCCCCCCCEEEcCCCCCC
Q 045139 187 Q-LSFLEYVRLNQVN-LGEATDWLQVVSQLPSLTELQLRGCNLP 228 (820)
Q Consensus 187 ~-l~~L~~L~l~~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 228 (820)
. +++|++|.+..+. +++ ..+.....+++.|++|++++|...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~-~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTD-EGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccch-hHHHHHHHhcCcccEEeeecCccc
Confidence 4 7888888877666 333 345666677888888888887654
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.47 E-value=0.088 Score=28.47 Aligned_cols=14 Identities=64% Similarity=0.807 Sum_probs=4.8
Q ss_pred CCEEECCCCCCCCc
Q 045139 295 LSYLDLSNNQLVSV 308 (820)
Q Consensus 295 L~~L~Ls~n~l~~i 308 (820)
|+.|++++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444433
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.41 E-value=0.0089 Score=57.38 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=41.5
Q ss_pred EEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCc
Q 045139 760 KSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLM 817 (820)
Q Consensus 760 ~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~ 817 (820)
..||+|.|++. ..| .++++..+..+++..|..+ ..|.++++++.++++|+-+|+|.
T Consensus 68 ~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 68 VRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 66777777776 666 7777777777777777776 66777777777777777777764
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.54 E-value=0.17 Score=27.38 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=4.5
Q ss_pred CCCEEECCCCcCc
Q 045139 644 QLTVLDLGHNKIS 656 (820)
Q Consensus 644 ~L~~L~Ls~N~l~ 656 (820)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.55 E-value=0.0089 Score=66.38 Aligned_cols=37 Identities=35% Similarity=0.436 Sum_probs=19.0
Q ss_pred CcEEEccCCcccCCCCC---CCCCCCCCCCEEECCCCCCC
Q 045139 270 LVYLDLSSNKLQGPIPD---SAFPNPTSLSYLDLSNNQLV 306 (820)
Q Consensus 270 L~~L~Ls~n~l~g~ip~---~~l~~l~~L~~L~Ls~n~l~ 306 (820)
+..|.|.+|.+...... .++.....|..|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 66677777766532111 11334455555555555555
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.94 E-value=0.44 Score=28.97 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=12.0
Q ss_pred CCCCEEECCCCcCccccCcch
Q 045139 643 TQLTVLDLGHNKISGIIPAWI 663 (820)
Q Consensus 643 ~~L~~L~Ls~N~l~~~~p~~l 663 (820)
++|++|+|++|+|+ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 45666666666666 555543
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.94 E-value=0.44 Score=28.97 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=12.0
Q ss_pred CCCCEEECCCCcCccccCcch
Q 045139 643 TQLTVLDLGHNKISGIIPAWI 663 (820)
Q Consensus 643 ~~L~~L~Ls~N~l~~~~p~~l 663 (820)
++|++|+|++|+|+ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 45666666666666 555543
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.57 E-value=0.56 Score=28.53 Aligned_cols=19 Identities=58% Similarity=0.732 Sum_probs=10.9
Q ss_pred CCCCEEECCCCCCCCcchh
Q 045139 293 TSLSYLDLSNNQLVSVPKS 311 (820)
Q Consensus 293 ~~L~~L~Ls~n~l~~ip~~ 311 (820)
++|++|+|++|+++.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666655543
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.57 E-value=0.56 Score=28.53 Aligned_cols=19 Identities=58% Similarity=0.732 Sum_probs=10.9
Q ss_pred CCCCEEECCCCCCCCcchh
Q 045139 293 TSLSYLDLSNNQLVSVPKS 311 (820)
Q Consensus 293 ~~L~~L~Ls~n~l~~ip~~ 311 (820)
++|++|+|++|+++.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666655543
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.92 E-value=0.023 Score=54.71 Aligned_cols=83 Identities=19% Similarity=0.214 Sum_probs=45.1
Q ss_pred cCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEe
Q 045139 619 CMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLD 698 (820)
Q Consensus 619 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 698 (820)
...+.||++.|++. .....|+-++.|..||++.|++. ..|..++ ....+..+++..|..+ ..|.+++..+.+++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~-q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAK-QQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHH-HHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 34444455544443 22334445555566666666655 5555555 3555555555555555 5566666666666666
Q ss_pred CcCCCCc
Q 045139 699 LSQNNIS 705 (820)
Q Consensus 699 Ls~N~l~ 705 (820)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 6666554
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.52 E-value=0.44 Score=28.34 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=7.2
Q ss_pred CCCCEEECCCCcCccc
Q 045139 643 TQLTVLDLGHNKISGI 658 (820)
Q Consensus 643 ~~L~~L~Ls~N~l~~~ 658 (820)
++|++|+|++|+|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4455555555555443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.88 E-value=0.36 Score=45.94 Aligned_cols=81 Identities=23% Similarity=0.208 Sum_probs=41.9
Q ss_pred CCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCC-CCCccCC-CCCCCcEEeCCCCccccccchhhccCCCCCCee
Q 045139 117 LNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTG-RVPYQLG-NLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYV 194 (820)
Q Consensus 117 L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~-~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 194 (820)
++.+|-++..+..+ --+.+..++.++.|.+.+|.--+ .--+.++ -.++|+.|++++|..+.......+.++++|+.|
T Consensus 103 IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 45566666655443 12234555556666666553221 0001111 235666666666666666666666666666666
Q ss_pred eCCC
Q 045139 195 RLNQ 198 (820)
Q Consensus 195 ~l~~ 198 (820)
.+++
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5543
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.91 E-value=0.45 Score=45.27 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=34.4
Q ss_pred CcEEeccCCcccccCCcchhcCCCCCEEECCCCcCcccc-CcchhcCCCCccEEEcCccc-ccccCCcccCCCCCCCEEe
Q 045139 621 MLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGII-PAWIGDSLPDLVVLSLRSNN-FHGRVPVQVCHLQRIQVLD 698 (820)
Q Consensus 621 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~ 698 (820)
++.+|-++..|..+--+.+.++++++.|.+.++.--+.. -+.++.-.++|+.|++++|+ |+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 344444444444443344444555555555544321110 01111123455555555554 3332223344455555555
Q ss_pred CcC
Q 045139 699 LSQ 701 (820)
Q Consensus 699 Ls~ 701 (820)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.91 E-value=2.5 Score=25.81 Aligned_cols=13 Identities=54% Similarity=0.672 Sum_probs=7.3
Q ss_pred CCCCeEeCCCCcC
Q 045139 804 TLLNSLDLSKNML 816 (820)
Q Consensus 804 ~~L~~LdLs~N~l 816 (820)
++|+.|+|++|+|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4455556655555
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.76 E-value=3.2 Score=25.24 Aligned_cols=17 Identities=59% Similarity=0.802 Sum_probs=11.1
Q ss_pred CCCEEECCCCCCCCcch
Q 045139 294 SLSYLDLSNNQLVSVPK 310 (820)
Q Consensus 294 ~L~~L~Ls~n~l~~ip~ 310 (820)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46666666666666664
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.79 E-value=4.5 Score=25.14 Aligned_cols=14 Identities=50% Similarity=0.503 Sum_probs=9.8
Q ss_pred CCCCeEeCCCCcCc
Q 045139 804 TLLNSLDLSKNMLM 817 (820)
Q Consensus 804 ~~L~~LdLs~N~l~ 817 (820)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777774
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=49.28 E-value=86 Score=34.38 Aligned_cols=113 Identities=18% Similarity=0.127 Sum_probs=54.1
Q ss_pred ccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCccccc
Q 045139 314 NLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGT 393 (820)
Q Consensus 314 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~ 393 (820)
.-+.+++++++.|.+....|-.+..-. --+.+..|..+...- ..+. ..=..+.+++++++.|.....
T Consensus 163 pnpr~r~~dls~npi~dkvpihl~~p~-------~pl~lr~c~lsskfi--s~l~----~qsg~~~lteldls~n~~Kdd 229 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIHLPQPG-------NPLSLRVCELSSKFI--SKLL----IQSGRLWLTELDLSTNGGKDD 229 (553)
T ss_pred CcchhhhhccCCCcccccCCccccCCC-------CccchhhhhhhhhHH--HHhh----hhhccccccccccccCCCCcc
Confidence 445678888888888877665443321 114444554432211 1111 000112233556666666666
Q ss_pred ccccccCC---CCCCEEecCCCcCccc--cCHHHhhcCCCCCEEeCcCCcc
Q 045139 394 LTKSIGQL---SQLELLDVASNSLKGM--ITEAHLSNLSRLTYLDLSHNSL 439 (820)
Q Consensus 394 ~~~~l~~l---~~L~~L~L~~n~l~~~--~~~~~l~~l~~L~~L~Ls~n~l 439 (820)
+|..+..+ ..++.++.+.-.+.-. ..+...+.-+.+...+++.|..
T Consensus 230 ip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 230 IPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred chhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 65543322 2355555555444311 1111234445677777776654
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.36 E-value=14 Score=41.08 Aligned_cols=15 Identities=40% Similarity=0.366 Sum_probs=8.8
Q ss_pred CccEEEcCCCCCccc
Q 045139 346 TLEILQLNSNMLRGS 360 (820)
Q Consensus 346 ~L~~L~L~~n~l~~~ 360 (820)
.|++|.+.+|++...
T Consensus 271 ~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 271 PLEELVLEGNPLCTT 285 (585)
T ss_pred CHHHeeecCCccccc
Confidence 366666666666543
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=44.06 E-value=14 Score=22.30 Aligned_cols=11 Identities=45% Similarity=0.356 Sum_probs=5.5
Q ss_pred CCCcEEeCCCC
Q 045139 164 TSLQYLDLSFN 174 (820)
Q Consensus 164 ~~L~~L~Ls~n 174 (820)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.20 E-value=17 Score=40.32 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=17.2
Q ss_pred CCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCC
Q 045139 189 SFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGC 225 (820)
Q Consensus 189 ~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n 225 (820)
+.+..+.+++|++...+.+...-...|+|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3444444555554444333333334455555555555
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=34.86 E-value=2.4e+02 Score=31.16 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=8.2
Q ss_pred ccEEECcCCCCCCchhh
Q 045139 245 LAHLDLSLNDVSNSVYY 261 (820)
Q Consensus 245 L~~L~Ls~n~l~~~~~~ 261 (820)
+.+++++.|...+.+|.
T Consensus 216 lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPR 232 (553)
T ss_pred ccccccccCCCCccchh
Confidence 44555555544444443
Done!