Query 045139
Match_columns 820
No_of_seqs 745 out of 4276
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 17:58:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.1E-86 7.2E-91 792.6 46.9 674 40-820 8-720 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.9E-72 9.9E-77 670.6 43.9 651 61-818 37-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 6.6E-58 2.3E-62 541.9 51.3 580 106-819 18-624 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-56 4.3E-61 531.0 49.6 572 87-796 24-625 (680)
5 3t6q_A CD180 antigen; protein- 100.0 5.1E-54 1.7E-58 501.8 43.3 526 106-819 26-562 (606)
6 3t6q_A CD180 antigen; protein- 100.0 7.3E-52 2.5E-56 483.5 46.8 503 88-718 33-549 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-52 5.5E-57 489.1 39.8 530 93-818 16-559 (606)
8 4eco_A Uncharacterized protein 100.0 3.7E-54 1.3E-58 502.4 24.6 496 39-793 25-600 (636)
9 3vq2_A TLR4, TOLL-like recepto 100.0 6.8E-51 2.3E-55 475.3 43.9 509 87-716 31-544 (606)
10 4ecn_A Leucine-rich repeat pro 100.0 1.4E-51 4.8E-56 487.4 30.5 489 37-705 262-864 (876)
11 3j0a_A TOLL-like receptor 5; m 100.0 5.7E-50 1.9E-54 483.0 33.3 520 115-818 24-561 (844)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-47 4.7E-52 462.2 41.2 522 76-708 14-563 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 2.6E-47 9.1E-52 441.9 37.7 415 269-819 101-533 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 8E-46 2.7E-50 429.5 42.1 495 115-797 28-535 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.6E-46 8.8E-51 431.4 32.9 205 75-330 3-210 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 4.9E-46 1.7E-50 429.0 30.3 477 243-819 5-512 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-43 8E-48 414.4 43.3 519 115-819 52-582 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 9.4E-45 3.2E-49 415.2 25.2 449 271-819 3-483 (520)
19 4ecn_A Leucine-rich repeat pro 100.0 3E-44 1E-48 424.8 28.8 444 243-816 323-863 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-44 9.9E-49 411.1 26.0 459 192-797 3-485 (520)
21 4eco_A Uncharacterized protein 100.0 4.8E-45 1.7E-49 425.5 16.4 465 244-818 82-601 (636)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.4E-42 8.3E-47 398.5 26.5 459 218-819 34-512 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-40 4.5E-45 391.0 41.5 558 88-818 52-629 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-41 1.1E-45 389.2 26.9 459 192-797 34-514 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 2.9E-41 1E-45 376.2 19.8 183 109-330 5-187 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 8.5E-39 2.9E-43 359.5 31.5 370 346-819 31-410 (455)
27 1ogq_A PGIP-2, polygalacturona 100.0 3E-40 1E-44 350.6 17.7 293 40-378 2-301 (313)
28 3v47_A TOLL-like receptor 5B a 100.0 7.3E-38 2.5E-42 351.9 34.0 387 246-710 13-413 (455)
29 1jl5_A Outer protein YOPM; leu 100.0 5.8E-38 2E-42 349.6 27.9 356 243-715 11-382 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-37 1.2E-41 343.6 31.0 273 104-419 31-303 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 4.3E-36 1.5E-40 334.8 29.0 360 210-714 37-396 (457)
32 1o6v_A Internalin A; bacterial 100.0 2.6E-34 9E-39 323.2 35.6 324 269-709 47-370 (466)
33 1o6v_A Internalin A; bacterial 100.0 1.5E-34 5E-39 325.3 32.1 346 291-794 44-389 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 1.3E-33 4.4E-38 319.1 24.5 319 347-794 13-334 (477)
35 2id5_A Lingo-1, leucine rich r 100.0 8.7E-33 3E-37 312.2 26.2 321 270-707 13-335 (477)
36 1ogq_A PGIP-2, polygalacturona 100.0 4.4E-33 1.5E-37 295.5 17.5 250 501-818 51-306 (313)
37 3o6n_A APL1; leucine-rich repe 100.0 1.5E-31 5E-36 293.8 27.4 242 401-705 44-285 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 1.7E-31 5.7E-36 293.3 26.6 287 112-439 42-330 (390)
39 4fmz_A Internalin; leucine ric 100.0 1.3E-30 4.6E-35 281.4 29.3 190 572-817 156-346 (347)
40 3oja_B Anopheles plasmodium-re 100.0 6.8E-31 2.3E-35 304.4 27.7 277 401-718 50-326 (597)
41 4fmz_A Internalin; leucine ric 100.0 3.4E-30 1.2E-34 278.3 31.2 302 269-705 45-346 (347)
42 3oja_B Anopheles plasmodium-re 100.0 8E-31 2.7E-35 303.8 27.0 332 62-441 8-359 (597)
43 4fcg_A Uncharacterized protein 100.0 6.6E-32 2.3E-36 288.1 13.3 281 40-358 23-314 (328)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-32 4.6E-37 309.5 -1.3 210 572-817 200-440 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 2.4E-29 8.3E-34 269.6 24.1 131 572-703 194-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 2.1E-28 7E-33 262.2 29.1 291 269-703 32-330 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 4.1E-29 1.4E-33 267.8 23.1 287 403-815 34-331 (332)
48 1z7x_W Ribonuclease inhibitor; 100.0 3.4E-32 1.2E-36 306.2 -1.5 206 572-819 171-413 (461)
49 1xku_A Decorin; proteoglycan, 100.0 1.5E-28 5.3E-33 263.1 27.0 267 476-815 53-330 (330)
50 3ogk_B Coronatine-insensitive 100.0 2.7E-31 9.3E-36 308.8 3.7 465 73-678 39-548 (592)
51 2z66_A Variable lymphocyte rec 100.0 3.4E-27 1.2E-31 249.9 21.8 204 572-818 53-262 (306)
52 4fcg_A Uncharacterized protein 100.0 9.7E-28 3.3E-32 255.8 17.6 200 572-817 105-314 (328)
53 1wwl_A Monocyte differentiatio 99.9 6.4E-29 2.2E-33 263.5 5.0 200 572-819 96-311 (312)
54 2z80_A TOLL-like receptor 2, v 99.9 7.3E-28 2.5E-32 260.4 13.0 279 474-819 30-316 (353)
55 3ogk_B Coronatine-insensitive 99.9 4.1E-29 1.4E-33 290.5 3.1 204 211-435 108-326 (592)
56 1ozn_A Reticulon 4 receptor; N 99.9 2E-26 7E-31 241.1 22.8 206 572-819 33-240 (285)
57 3zyi_A Leucine-rich repeat-con 99.9 3.3E-26 1.1E-30 256.1 24.8 205 572-819 100-305 (452)
58 3zyj_A Leucine-rich repeat-con 99.9 3.5E-26 1.2E-30 254.9 24.8 204 572-818 89-293 (440)
59 2z66_A Variable lymphocyte rec 99.9 1.1E-26 3.7E-31 246.0 16.6 181 572-795 79-263 (306)
60 2z80_A TOLL-like receptor 2, v 99.9 1.7E-26 5.9E-31 249.6 18.0 290 72-443 26-317 (353)
61 1ozn_A Reticulon 4 receptor; N 99.9 3.4E-26 1.1E-30 239.5 16.8 267 478-813 14-283 (285)
62 1wwl_A Monocyte differentiatio 99.9 5.2E-28 1.8E-32 256.5 2.8 272 63-359 21-310 (312)
63 3o53_A Protein LRIM1, AGAP0063 99.9 9.2E-27 3.1E-31 247.5 9.6 261 370-718 2-264 (317)
64 3o53_A Protein LRIM1, AGAP0063 99.9 3.3E-27 1.1E-31 251.0 5.5 188 572-812 81-270 (317)
65 2z62_A TOLL-like receptor 4, v 99.9 5.8E-25 2E-29 228.9 21.1 210 572-819 29-239 (276)
66 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-25 7.8E-30 255.3 19.6 284 63-419 12-301 (622)
67 2p1m_B Transport inhibitor res 99.9 5.9E-28 2E-32 280.9 -3.7 213 73-321 32-270 (594)
68 3zyi_A Leucine-rich repeat-con 99.9 1.6E-24 5.3E-29 242.5 23.4 246 477-793 56-303 (452)
69 3zyj_A Leucine-rich repeat-con 99.9 1.2E-24 4.1E-29 242.5 22.4 246 477-793 45-292 (440)
70 3g06_A SSPH2 (leucine-rich rep 99.9 6.2E-24 2.1E-28 243.5 27.0 258 453-819 42-299 (622)
71 2o6q_A Variable lymphocyte rec 99.9 6.1E-24 2.1E-28 220.2 22.0 203 572-819 17-220 (270)
72 2p1m_B Transport inhibitor res 99.9 5.7E-27 1.9E-31 272.6 -1.4 389 211-706 101-520 (594)
73 3oja_A Leucine-rich immune mol 99.9 3E-25 1E-29 249.6 11.7 188 572-812 81-270 (487)
74 3oja_A Leucine-rich immune mol 99.9 1.2E-24 4.2E-29 244.5 15.0 234 399-720 31-266 (487)
75 2o6q_A Variable lymphocyte rec 99.9 7.4E-23 2.5E-27 212.0 22.5 216 73-358 2-218 (270)
76 1p9a_G Platelet glycoprotein I 99.9 4.4E-23 1.5E-27 215.6 19.9 198 572-818 11-209 (290)
77 2z62_A TOLL-like receptor 4, v 99.9 1.6E-22 5.4E-27 210.4 20.1 183 572-797 53-241 (276)
78 3rfs_A Internalin B, repeat mo 99.9 4.4E-23 1.5E-27 213.8 15.6 142 572-718 42-183 (272)
79 4glp_A Monocyte differentiatio 99.9 1.4E-23 4.9E-28 222.1 9.7 203 572-819 92-309 (310)
80 3rfs_A Internalin B, repeat mo 99.9 2.1E-22 7.2E-27 208.7 17.1 200 572-819 20-220 (272)
81 3m19_A Variable lymphocyte rec 99.9 4.4E-22 1.5E-26 203.7 19.1 179 572-795 15-194 (251)
82 2ca6_A RAN GTPase-activating p 99.9 1.1E-23 3.8E-28 230.6 3.5 250 466-797 23-320 (386)
83 2xwt_C Thyrotropin receptor; s 99.9 6.1E-22 2.1E-26 201.1 16.0 196 572-815 32-237 (239)
84 1p9a_G Platelet glycoprotein I 99.9 3E-21 1E-25 201.6 21.0 176 572-793 32-208 (290)
85 1h6u_A Internalin H; cell adhe 99.9 1.9E-21 6.6E-26 205.2 16.8 190 572-818 42-231 (308)
86 3m19_A Variable lymphocyte rec 99.9 4.7E-21 1.6E-25 196.1 19.2 177 597-818 16-193 (251)
87 2ast_B S-phase kinase-associat 99.9 1.4E-22 4.9E-27 217.4 7.4 265 73-363 34-311 (336)
88 3goz_A Leucine-rich repeat-con 99.9 4.2E-23 1.4E-27 223.6 3.1 138 572-709 81-242 (362)
89 3goz_A Leucine-rich repeat-con 99.9 1.2E-22 4.2E-27 219.9 6.3 265 383-714 3-306 (362)
90 2ca6_A RAN GTPase-activating p 99.9 8.4E-23 2.9E-27 223.6 4.9 161 572-774 123-320 (386)
91 2ast_B S-phase kinase-associat 99.9 1.5E-22 5.2E-27 217.2 5.9 201 476-703 48-258 (336)
92 4glp_A Monocyte differentiatio 99.9 1.1E-21 3.9E-26 207.5 12.1 177 572-794 118-308 (310)
93 2xwt_C Thyrotropin receptor; s 99.8 3.4E-21 1.2E-25 195.7 13.5 187 583-818 23-219 (239)
94 3cvr_A Invasion plasmid antige 99.8 3.3E-20 1.1E-24 209.9 17.4 193 547-803 60-253 (571)
95 2o6s_A Variable lymphocyte rec 99.8 3.1E-20 1.1E-24 184.1 13.7 182 573-805 9-190 (208)
96 3cvr_A Invasion plasmid antige 99.8 3.2E-20 1.1E-24 210.0 15.1 198 77-340 49-254 (571)
97 1h6u_A Internalin H; cell adhe 99.8 1.4E-19 4.7E-24 190.9 18.0 195 111-359 37-231 (308)
98 2o6s_A Variable lymphocyte rec 99.8 1.1E-19 3.9E-24 180.0 13.8 175 572-799 29-204 (208)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 2.8E-19 9.7E-24 178.5 16.3 133 645-818 34-167 (220)
100 4ay9_X Follicle-stimulating ho 99.8 4.7E-19 1.6E-23 190.7 16.6 239 76-376 9-254 (350)
101 1h6t_A Internalin B; cell adhe 99.8 4.8E-19 1.6E-23 185.1 14.5 124 572-706 47-170 (291)
102 4ay9_X Follicle-stimulating ho 99.8 1E-18 3.4E-23 188.1 16.8 241 118-413 12-257 (350)
103 2v9t_B SLIT homolog 2 protein 99.8 1.2E-18 4.1E-23 173.9 15.9 117 598-718 14-130 (220)
104 2xot_A Amphoterin-induced prot 99.8 6E-19 2E-23 190.7 13.8 130 573-706 20-150 (361)
105 3e6j_A Variable lymphocyte rec 99.8 2.9E-18 1E-22 172.3 16.6 154 597-796 21-175 (229)
106 4ezg_A Putative uncharacterize 99.8 1.5E-18 5.3E-23 170.1 12.6 155 616-818 41-195 (197)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 4.4E-18 1.5E-22 169.8 16.1 142 573-718 13-155 (220)
108 1m9s_A Internalin B; cell inva 99.8 1.1E-18 3.8E-23 199.7 12.9 169 572-795 44-212 (605)
109 1h6t_A Internalin B; cell adhe 99.8 2.1E-18 7.3E-23 180.1 13.3 187 575-818 28-214 (291)
110 2v9t_B SLIT homolog 2 protein 99.8 6.1E-18 2.1E-22 168.8 16.0 141 574-718 14-154 (220)
111 2xot_A Amphoterin-induced prot 99.8 3.7E-18 1.3E-22 184.4 14.1 144 572-716 40-187 (361)
112 1m9s_A Internalin B; cell inva 99.8 6.2E-18 2.1E-22 193.6 16.4 148 545-706 42-189 (605)
113 4b8c_D Glucose-repressible alc 99.8 3.2E-19 1.1E-23 209.6 5.6 195 573-818 203-405 (727)
114 1xeu_A Internalin C; cellular 99.7 1.4E-18 4.8E-23 178.6 8.8 168 572-795 20-187 (263)
115 3e6j_A Variable lymphocyte rec 99.7 3.1E-17 1.1E-21 164.8 16.6 157 572-774 20-176 (229)
116 4ezg_A Putative uncharacterize 99.7 9.4E-18 3.2E-22 164.5 11.5 156 591-794 40-195 (197)
117 1dce_A Protein (RAB geranylger 99.7 1.3E-19 4.6E-24 206.2 -5.0 192 572-811 350-567 (567)
118 1dce_A Protein (RAB geranylger 99.7 1.2E-19 4E-24 206.7 -6.0 181 592-819 346-548 (567)
119 1xeu_A Internalin C; cellular 99.7 2.3E-17 8E-22 169.4 10.6 155 547-718 20-174 (263)
120 1w8a_A SLIT protein; signaling 99.7 3.1E-17 1E-21 160.0 10.9 134 572-709 9-143 (192)
121 1w8a_A SLIT protein; signaling 99.7 6.7E-17 2.3E-21 157.5 13.1 93 622-718 11-104 (192)
122 4b8c_D Glucose-repressible alc 99.7 6.3E-18 2.2E-22 198.6 2.8 235 41-303 129-369 (727)
123 2wfh_A SLIT homolog 2 protein 99.6 1.4E-15 4.7E-20 148.2 13.1 127 646-818 13-140 (193)
124 2ell_A Acidic leucine-rich nuc 99.6 7.9E-16 2.7E-20 146.5 10.8 135 572-710 25-164 (168)
125 2ell_A Acidic leucine-rich nuc 99.6 8.1E-16 2.8E-20 146.5 9.7 131 643-817 24-160 (168)
126 2je0_A Acidic leucine-rich nuc 99.6 7.7E-16 2.6E-20 143.4 9.2 127 643-813 17-149 (149)
127 2je0_A Acidic leucine-rich nuc 99.6 1.3E-15 4.6E-20 141.8 9.2 127 572-701 18-149 (149)
128 2o6r_A Variable lymphocyte rec 99.6 6.8E-15 2.3E-19 141.3 14.3 93 622-718 10-102 (177)
129 2wfh_A SLIT homolog 2 protein 99.6 9.7E-15 3.3E-19 142.1 13.4 130 573-707 12-141 (193)
130 2o6r_A Variable lymphocyte rec 99.6 1.2E-14 4E-19 139.7 13.5 134 572-709 8-141 (177)
131 3sb4_A Hypothetical leucine ri 99.6 1.1E-14 3.9E-19 154.9 12.8 103 593-698 224-327 (329)
132 1ds9_A Outer arm dynein; leuci 99.5 8.2E-17 2.8E-21 157.9 -6.8 160 591-817 14-185 (198)
133 1a9n_A U2A', U2A'; complex (nu 99.5 2.7E-14 9.3E-19 136.9 9.2 86 615-705 15-101 (176)
134 3sb4_A Hypothetical leucine ri 99.5 7.8E-14 2.7E-18 148.4 12.0 216 545-811 48-328 (329)
135 1a9n_A U2A', U2A'; complex (nu 99.5 9.9E-14 3.4E-18 133.0 10.6 128 572-705 20-153 (176)
136 1ds9_A Outer arm dynein; leuci 99.5 3E-16 1E-20 153.9 -7.4 133 572-710 19-158 (198)
137 3g39_A Variable lymphocyte rec 99.4 3E-13 1E-17 128.6 11.3 106 645-795 11-117 (170)
138 2r9u_A Variable lymphocyte rec 99.4 7E-13 2.4E-17 126.4 11.4 104 646-794 15-119 (174)
139 3g39_A Variable lymphocyte rec 99.4 1.3E-12 4.5E-17 124.1 11.9 108 597-708 11-118 (170)
140 2r9u_A Variable lymphocyte rec 99.4 2.8E-12 9.6E-17 122.2 11.6 105 598-706 15-119 (174)
141 3un9_A NLR family member X1; l 99.3 5.6E-14 1.9E-18 151.3 -0.9 184 594-818 71-284 (372)
142 4fs7_A Uncharacterized protein 99.3 5.3E-11 1.8E-15 129.9 21.7 40 396-437 156-195 (394)
143 4fdw_A Leucine rich hypothetic 99.3 3.1E-11 1.1E-15 131.2 19.3 240 244-510 136-380 (401)
144 4fdw_A Leucine rich hypothetic 99.3 5.4E-11 1.9E-15 129.2 19.6 194 572-815 181-381 (401)
145 3un9_A NLR family member X1; l 99.3 1.1E-13 3.6E-18 149.1 -2.8 181 572-794 73-284 (372)
146 4fs7_A Uncharacterized protein 99.3 1.8E-10 6E-15 125.7 21.8 326 263-697 66-393 (394)
147 2ifg_A High affinity nerve gro 99.2 5.2E-11 1.8E-15 127.7 10.6 103 647-794 12-117 (347)
148 2ifg_A High affinity nerve gro 99.1 1.9E-10 6.5E-15 123.2 10.9 105 574-682 11-117 (347)
149 4gt6_A Cell surface protein; l 99.0 2.2E-08 7.5E-13 109.0 23.0 111 588-703 258-368 (394)
150 4gt6_A Cell surface protein; l 99.0 2.1E-08 7.1E-13 109.2 21.4 125 572-704 266-390 (394)
151 2ra8_A Uncharacterized protein 98.8 1.6E-09 5.4E-14 115.4 3.7 182 591-815 135-341 (362)
152 2ra8_A Uncharacterized protein 98.8 1.8E-09 6.1E-14 115.0 3.2 169 612-818 132-321 (362)
153 4h09_A Hypothetical leucine ri 98.5 6.8E-06 2.3E-10 88.7 22.8 127 587-718 209-335 (379)
154 4h09_A Hypothetical leucine ri 98.5 1.3E-05 4.6E-10 86.4 22.6 82 572-656 264-345 (379)
155 1io0_A Tropomodulin; LRR prote 98.4 5.5E-08 1.9E-12 93.3 1.1 116 589-705 30-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.3 3.1E-07 1E-11 88.1 3.7 119 208-329 29-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 1.2E-07 4E-12 95.5 0.7 64 618-684 169-236 (267)
158 3rw6_A Nuclear RNA export fact 98.3 2.8E-07 9.7E-12 92.8 3.5 97 576-674 148-257 (267)
159 3e4g_A ATP synthase subunit S, 98.0 3.9E-06 1.3E-10 78.1 4.2 83 141-225 62-149 (176)
160 3e4g_A ATP synthase subunit S, 97.9 3.4E-06 1.2E-10 78.5 1.7 88 115-203 61-154 (176)
161 3rfe_A Platelet glycoprotein I 96.9 0.0012 4.1E-08 58.4 6.3 57 760-818 11-69 (130)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00088 3E-08 63.5 5.4 59 269-328 99-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00063 2.1E-08 64.5 4.0 17 137-153 38-55 (197)
164 3rfe_A Platelet glycoprotein I 96.2 0.0068 2.3E-07 53.5 5.9 56 647-705 12-68 (130)
165 2lz0_A Uncharacterized protein 35.1 39 0.0013 27.5 4.2 42 283-325 10-52 (100)
166 2lz0_A Uncharacterized protein 24.8 63 0.0022 26.2 3.8 12 639-650 39-50 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-86 Score=792.63 Aligned_cols=674 Identities=28% Similarity=0.402 Sum_probs=468.2
Q ss_pred cCCHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCcccCceEecCCCCcEEEEEcCCCCCCCCccc---ccccccCCCC
Q 045139 40 KCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGN---ISSSLIGLQH 116 (820)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~---i~~~l~~l~~ 116 (820)
.+.++|++||++||+++.||. .+++|. .+.+||.|.||+|+ +|||++|+|++ .++.|. +|++++++++
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~---~~l~g~~~~l~~~l~~L~~ 78 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS---KPLNVGFSAVSSSLLSLTG 78 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT---SCCCEEHHHHHHHTTTCTT
T ss_pred cCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCC---CCcCCccCccChhHhccCc
Confidence 356789999999999999988 899997 47899999999998 68999999999 889998 9999999999
Q ss_pred CCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCc--cCCCCCCCcEEeCCCCccccccchh-hccCCCCCCe
Q 045139 117 LNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPY--QLGNLTSLQYLDLSFNFDMLSKKLE-WLSQLSFLEY 193 (820)
Q Consensus 117 L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L~~ 193 (820)
|+.++++.+.+.. +|+.++++++|++|+|++|.++|.+|. .++++++|++|++++|. .....+. .+.++++|++
T Consensus 79 L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 79 LESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp CCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSE
T ss_pred ccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCE
Confidence 9999999998743 778999999999999999999999998 99999999999999993 2222222 3367888888
Q ss_pred eeCCCccCCCCccHHHH---hCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCC
Q 045139 194 VRLNQVNLGEATDWLQV---VSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL 270 (820)
Q Consensus 194 L~l~~n~l~~~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 270 (820)
|++++|.+.+. .+.. +.++++|++|++++|.+++..+ +..+ ++|++|++++|.+++.+|. +.... +|
T Consensus 156 L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l-~~L~~L~Ls~n~l~~~~~~-l~~l~-~L 225 (768)
T 3rgz_A 156 LDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVD-----VSRC-VNLEFLDVSSNNFSTGIPF-LGDCS-AL 225 (768)
T ss_dssp EECCSSCCEEE--THHHHHHTTCCTTCCEEECCSSEEESCCB-----CTTC-TTCCEEECCSSCCCSCCCB-CTTCC-SC
T ss_pred EECCCCccCCc--CChhhhhhccCCCCCEEECCCCcccccCC-----cccC-CcCCEEECcCCcCCCCCcc-cccCC-CC
Confidence 88888887763 3333 6778888888888887776654 2344 6777777777777666655 44444 67
Q ss_pred cEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCC-CcchhhhccCCCcEEEcCCCCCCCcchhhhhhc-ccCCcCCcc
Q 045139 271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKL-SNCSRDTLE 348 (820)
Q Consensus 271 ~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~-~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~~~~~~L~ 348 (820)
++|++++|.+++.+|.. ++.+++|++|++++|+++ .+|.. .+++|++|++++|++++.+|..+... + +|+
T Consensus 226 ~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~-----~L~ 297 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD-----TLT 297 (768)
T ss_dssp CEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT-----TCS
T ss_pred CEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC-----cCC
Confidence 77777777776666655 666777777777777666 34432 56667777777776666666655543 4 666
Q ss_pred EEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCccccccccc-ccCCCCCCEEecCCCcCccccCHHHhhcC
Q 045139 349 ILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKS-IGQLSQLELLDVASNSLKGMITEAHLSNL 426 (820)
Q Consensus 349 ~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 426 (820)
+|++++|.+.+.+|. ++.+++|++|+ +++|.++|.+|.. +.++++|++|++++|.+++.+|. .+.++
T Consensus 298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~----------L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l 366 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFFGSCSLLESLA----------LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNL 366 (768)
T ss_dssp EEECCSSEEEECCCGGGGGCTTCCEEE----------CCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT-THHHH
T ss_pred EEECcCCcCCCccchHHhcCCCccEEE----------CCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH-HHHhh
Confidence 777777766666665 66666666543 3345555555544 66666666777766666665665 45555
Q ss_pred C-CCCEEeCcCCccccccCCCCcC--ccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcE
Q 045139 427 S-RLTYLDLSHNSLILNFGSGWVP--SFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLY 503 (820)
Q Consensus 427 ~-~L~~L~Ls~n~l~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~ 503 (820)
+ +|++|++++|.+.+..+..+.. ...|+.|++++|.+.+.+|.++..+++|++|++++|.+++.+|..+..+ ++|+
T Consensus 367 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~ 445 (768)
T 3rgz_A 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLR 445 (768)
T ss_dssp TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC-TTCC
T ss_pred hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC-CCCC
Confidence 4 6666666666666666655544 4556666666666666666666666666666666666666666665554 4666
Q ss_pred EEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCcc
Q 045139 504 YLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLL 583 (820)
Q Consensus 504 ~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l 583 (820)
+|++++|++++.+|..+..++.+ +.+++++|+++|.+|..+..+. +|++|++++|++
T Consensus 446 ~L~L~~n~l~~~~p~~~~~l~~L-~~L~L~~N~l~~~~p~~l~~l~----------------------~L~~L~L~~N~l 502 (768)
T 3rgz_A 446 DLKLWLNMLEGEIPQELMYVKTL-ETLILDFNDLTGEIPSGLSNCT----------------------NLNWISLSNNRL 502 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTC-CEEECCSSCCCSCCCGGGGGCT----------------------TCCEEECCSSCC
T ss_pred EEECCCCcccCcCCHHHcCCCCc-eEEEecCCcccCcCCHHHhcCC----------------------CCCEEEccCCcc
Confidence 66666666666666655555555 5666666666655554433332 566666666666
Q ss_pred ccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCC----------
Q 045139 584 SGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHN---------- 653 (820)
Q Consensus 584 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N---------- 653 (820)
++.+|..++.+++|++|++++|++++.+|..++.+++|++|++++|+++|.+|..+..+..+..+++..+
T Consensus 503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence 6666666666666666666666666666666666666666666666666666665555444443333221
Q ss_pred ------------cCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcccccccccc
Q 045139 654 ------------KISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTAN 721 (820)
Q Consensus 654 ------------~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~ 721 (820)
.+.|..|..+. .++.++.++++.|.+.|.+|..+..+++|+.||+++|+++|.+|.++++++.|
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L--- 658 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL--- 658 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGG-GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC---
T ss_pred ccccccccccccccccccchhhh-ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC---
Confidence 12223333333 34445555666677777777777777888888888888888888777777766
Q ss_pred ccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccc
Q 045139 722 KSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKI 800 (820)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l 800 (820)
+.|||++|+++|.|| .++++++|++||||+|+++|.+|..+
T Consensus 659 --------------------------------------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 659 --------------------------------------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp --------------------------------------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred --------------------------------------CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence 678888888887888 77788888888888888888888878
Q ss_pred cCCCCCCeEeCCCCcCcccC
Q 045139 801 GGLTLLNSLDLSKNMLMRAT 820 (820)
Q Consensus 801 ~~l~~L~~LdLs~N~l~g~i 820 (820)
+++++|++||+|+|+|+|+|
T Consensus 701 ~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 701 SALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp GGCCCCSEEECCSSEEEEEC
T ss_pred hCCCCCCEEECcCCcccccC
Confidence 77888888888888887765
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.9e-72 Score=670.57 Aligned_cols=651 Identities=25% Similarity=0.348 Sum_probs=568.5
Q ss_pred CCCCCCCCCCCCCCCcccCceEecCCC-----C-------------cEEEEEcCCCCCCCCcccccccccCCCCCCEEEC
Q 045139 61 GHLSSWGNEDDKKDCCKWRGVSCSNQT-----G-------------HVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNM 122 (820)
Q Consensus 61 ~~~~~W~~~~~~~~~c~w~gv~c~~~~-----~-------------~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~L 122 (820)
..+|+|. |+.|- ...|+.-+.. | +++.++++. +++. .+|+.++++++|++|||
T Consensus 37 ~~~C~w~----gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~---~~~~-~l~~~~~~l~~L~~L~L 107 (768)
T 3rgz_A 37 KNPCTFD----GVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSN---SHIN-GSVSGFKCSASLTSLDL 107 (768)
T ss_dssp SCGGGST----TEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTT---SCEE-ECCCCCCCCTTCCEEEC
T ss_pred CCCcCCc----ceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcC---CCcC-CCchhhccCCCCCEEEC
Confidence 3579996 77764 3446543221 1 234444444 3332 24589999999999999
Q ss_pred cCCCCCCcccCc--cccCCCCCCEEeccCCCCCCCCCccC-CCCCCCcEEeCCCCccccccchhh---ccCCCCCCeeeC
Q 045139 123 KYNDFGGKQIPA--FIGSLKNIRHLDLSNAGFTGRVPYQL-GNLTSLQYLDLSFNFDMLSKKLEW---LSQLSFLEYVRL 196 (820)
Q Consensus 123 s~n~l~~~~~p~--~i~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~~~~~~~~~---l~~l~~L~~L~l 196 (820)
++|.+.+. +|. .++++++|++|+|++|.+.+.+|..+ +++++|++|++++| .+....+.. +.++++|++|++
T Consensus 108 s~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~L 185 (768)
T 3rgz_A 108 SRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAI 185 (768)
T ss_dssp CSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEEC
T ss_pred CCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEEC
Confidence 99999986 888 89999999999999999999999877 89999999999999 333333333 789999999999
Q ss_pred CCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEcc
Q 045139 197 NQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLS 276 (820)
Q Consensus 197 ~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls 276 (820)
++|.+.+... +.++++|++|++++|.+++.+| . ++++ ++|++|++++|.+++.+|..+.... +|++|+++
T Consensus 186 s~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~---~-l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls 255 (768)
T 3rgz_A 186 SGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIP---F-LGDC-SALQHLDISGNKLSGDFSRAISTCT-ELKLLNIS 255 (768)
T ss_dssp CSSEEESCCB----CTTCTTCCEEECCSSCCCSCCC---B-CTTC-CSCCEEECCSSCCCSCHHHHTTTCS-SCCEEECC
T ss_pred CCCcccccCC----cccCCcCCEEECcCCcCCCCCc---c-cccC-CCCCEEECcCCcCCCcccHHHhcCC-CCCEEECC
Confidence 9999987532 3789999999999999999887 3 6777 9999999999999999999988877 99999999
Q ss_pred CCcccCCCCCCCCCCCCCCCEEECCCCCCC-Ccchhhhcc-CCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCC
Q 045139 277 SNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNL-CRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNS 354 (820)
Q Consensus 277 ~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~-~ip~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~ 354 (820)
+|.+++.+|.. .+++|++|++++|+++ .+|..+... ++|++|++++|++++.+|..|..++ +|++|++++
T Consensus 256 ~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~-----~L~~L~L~~ 327 (768)
T 3rgz_A 256 SNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-----LLESLALSS 327 (768)
T ss_dssp SSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT-----TCCEEECCS
T ss_pred CCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC-----CccEEECCC
Confidence 99999888863 8999999999999999 889887765 9999999999999999999999998 999999999
Q ss_pred CCCcccCCC--CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCC-CCCEEecCCCcCccccCHHHhhc--CCCC
Q 045139 355 NMLRGSLPD--ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLS-QLELLDVASNSLKGMITEAHLSN--LSRL 429 (820)
Q Consensus 355 n~l~~~~p~--~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~--l~~L 429 (820)
|.+.+.+|. +..+++|++| ++++|.+++.+|..+..++ +|++|++++|.+++.+|. .+.. +++|
T Consensus 328 n~l~~~ip~~~l~~l~~L~~L----------~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~~~~~~L 396 (768)
T 3rgz_A 328 NNFSGELPMDTLLKMRGLKVL----------DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQNPKNTL 396 (768)
T ss_dssp SEEEEECCHHHHTTCTTCCEE----------ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTCSTTCCC
T ss_pred CcccCcCCHHHHhcCCCCCEE----------eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhhcccCCc
Confidence 999988886 8888998876 4557777888999999987 999999999999988877 4555 7899
Q ss_pred CEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCC
Q 045139 430 TYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSH 509 (820)
Q Consensus 430 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~ 509 (820)
++|++++|.+++.+|..+..+.+|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+... ++|++|++++
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~ 475 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLILDF 475 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCceEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999988775 7999999999
Q ss_pred CcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCc
Q 045139 510 NHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPN 589 (820)
Q Consensus 510 n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~ 589 (820)
|++++.+|..+..++.+ +.+++++|++++.+|..+..+. +|++|++++|+++|.+|.
T Consensus 476 N~l~~~~p~~l~~l~~L-~~L~L~~N~l~~~~p~~~~~l~----------------------~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNL-NWISLSNNRLTGEIPKWIGRLE----------------------NLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp SCCCSCCCGGGGGCTTC-CEEECCSSCCCSCCCGGGGGCT----------------------TCCEEECCSSCCEEECCG
T ss_pred CcccCcCCHHHhcCCCC-CEEEccCCccCCcCChHHhcCC----------------------CCCEEECCCCcccCcCCH
Confidence 99999999988888888 9999999999999887766555 899999999999999999
Q ss_pred ccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCC----------------------cccccCCcchhcCCCCCE
Q 045139 590 CSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNN----------------------SFIGELPSSVKSFTQLTV 647 (820)
Q Consensus 590 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N----------------------~l~~~~p~~l~~l~~L~~ 647 (820)
.+..+++|++|++++|+++|.+|..+.....+..+++..+ .+.+..+..+..++.++.
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence 9999999999999999999999999888776665554431 245566777888888999
Q ss_pred EECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcc
Q 045139 648 LDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAM 727 (820)
Q Consensus 648 L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~ 727 (820)
++++.|.+.|.+|..+. .+++|++|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|..+++++.|
T Consensus 613 ~~l~~~~~~g~~~~~~~-~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L--------- 682 (768)
T 3rgz_A 613 CNITSRVYGGHTSPTFD-NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL--------- 682 (768)
T ss_dssp SCTTSCEEEEECCCSCS-SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC---------
T ss_pred cccccceecccCchhhh-ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC---------
Confidence 99999999999999987 79999999999999999999999999999999999999999999999999888
Q ss_pred cccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCC
Q 045139 728 IRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLL 806 (820)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 806 (820)
+.||||+|+++|.|| .++.+++|++||+|+|+++|.||+. +.+..+
T Consensus 683 --------------------------------~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~ 729 (768)
T 3rgz_A 683 --------------------------------NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETF 729 (768)
T ss_dssp --------------------------------CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGS
T ss_pred --------------------------------CEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccC
Confidence 899999999999999 9999999999999999999999975 556666
Q ss_pred CeEeCCCCc-Ccc
Q 045139 807 NSLDLSKNM-LMR 818 (820)
Q Consensus 807 ~~LdLs~N~-l~g 818 (820)
....+.+|+ +.|
T Consensus 730 ~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 730 PPAKFLNNPGLCG 742 (768)
T ss_dssp CGGGGCSCTEEES
T ss_pred CHHHhcCCchhcC
Confidence 777778886 444
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.6e-58 Score=541.93 Aligned_cols=580 Identities=23% Similarity=0.266 Sum_probs=398.1
Q ss_pred cccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhc
Q 045139 106 NISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWL 185 (820)
Q Consensus 106 ~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l 185 (820)
.+|..+. +++++|++++|.+++. .+..|+++++|++|+|++|.+++..|..++++++|++|++++|
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n----------- 83 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN----------- 83 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-----------
T ss_pred ccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-----------
Confidence 3555544 6788888888888764 4556788888888888888888777777777777777777766
Q ss_pred cCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhc
Q 045139 186 SQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFN 265 (820)
Q Consensus 186 ~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 265 (820)
.+... .+..++++++|++|++++|.+++..+ ..+.++ ++|++|++++|.+++..|..+..
T Consensus 84 --------------~l~~l--~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~ 143 (680)
T 1ziw_A 84 --------------ELSQL--SDKTFAFCTNLTELHLMSNSIQKIKN---NPFVKQ-KNLITLDLSHNGLSSTKLGTQVQ 143 (680)
T ss_dssp --------------CCCCC--CTTTTTTCTTCSEEECCSSCCCCCCS---CTTTTC-TTCCEEECCSSCCSCCCCCSSSC
T ss_pred --------------ccCcc--ChhhhccCCCCCEEECCCCccCccCh---hHcccc-CCCCEEECCCCcccccCchhhcc
Confidence 33331 11356778888888888888777666 445555 67777777777766655555544
Q ss_pred cCCCCcEEEccCCcccCCCCCCCCC--CCCCCCEEECCCCCCCCc-chhhhccCCCcEEEcCCCCCCCcchhhhhhcccC
Q 045139 266 SSSSLVYLDLSSNKLQGPIPDSAFP--NPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNC 342 (820)
Q Consensus 266 ~~~~L~~L~Ls~n~l~g~ip~~~l~--~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~ 342 (820)
+. +|++|++++|.+++..+.. +. .+++|++|++++|+++.+ |..+..+++|+.++++++.+.+.....+....
T Consensus 144 l~-~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-- 219 (680)
T 1ziw_A 144 LE-NLQELLLSNNKIQALKSEE-LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-- 219 (680)
T ss_dssp CT-TCCEEECCSSCCCCBCHHH-HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH--
T ss_pred cc-cCCEEEccCCcccccCHHH-hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh--
Confidence 44 6666666666666433322 22 346666666666666644 33466666666666666665533222221100
Q ss_pred CcCCccEEEcCCCCCcccCCC-CcCcCC--CcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccC
Q 045139 343 SRDTLEILQLNSNMLRGSLPD-ITLFSS--LKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMIT 419 (820)
Q Consensus 343 ~~~~L~~L~L~~n~l~~~~p~-~~~l~~--L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 419 (820)
...+|+.|++++|.+.+..|. +..++. |++| ++++|.+++..|..++.+++|++|++++|.+++..|
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L----------~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (680)
T 1ziw_A 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML----------DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE----------ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT
T ss_pred hhccccEEEccCCcccccChhHhhccCcCCCCEE----------ECCCCCcCccCcccccCcccccEeeCCCCccCccCh
Confidence 001566666666666665555 444432 4443 334444444555566666666666666666665444
Q ss_pred HHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCc----hhhhcCCCccEEecCCCCccCCCCchh
Q 045139 420 EAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFP----KWLQTQNKFSELDVSAAEISDTVPNWF 495 (820)
Q Consensus 420 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~n~i~~~~p~~~ 495 (820)
. .+.++++|++|++++|...+.++. ..+| ..+..+++|++|++++|.+.+..|..+
T Consensus 290 ~-~~~~l~~L~~L~L~~~~~~~~~~~-------------------~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 349 (680)
T 1ziw_A 290 H-SLHGLFNVRYLNLKRSFTKQSISL-------------------ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349 (680)
T ss_dssp T-TTTTCTTCCEEECTTCBCCC-------------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT
T ss_pred h-hhcCCCCccEEeccchhhhccccc-------------------ccccccChhhcccCCCCCEEECCCCccCCCChhHh
Confidence 3 466666666666665543221110 0122 256677778888888887777666655
Q ss_pred hccCCCcEEEEcCCCcCCCCCC--cccccc--cCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccc
Q 045139 496 WDLSPNLYYLNLSHNHFTGMLP--DLSQKF--TAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDE 571 (820)
Q Consensus 496 ~~~~~~L~~L~ls~n~l~~~~p--~~~~~~--~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~ 571 (820)
..+ ++|++|++++|.+..... ..+... ..+ +.+++++|++++..|..+..+.
T Consensus 350 ~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L-~~L~L~~n~l~~~~~~~~~~l~---------------------- 405 (680)
T 1ziw_A 350 TGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPL-HILNLTKNKISKIESDAFSWLG---------------------- 405 (680)
T ss_dssp TTC-TTCCEEECTTCBSCCCEECTTTTGGGTTSCC-CEEECTTSCCCEECTTTTTTCT----------------------
T ss_pred ccc-cCCcEEECCCCchhhhhcchhhhcccccCcC-ceEECCCCCCCeEChhhhhCCC----------------------
Confidence 543 678888888776543211 111111 234 6677777777666555554443
Q ss_pred cccEEEccCCccccccC-cccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCccc--ccCCcchhcCCCCCEE
Q 045139 572 HFRYLDLSDNLLSGELP-NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFI--GELPSSVKSFTQLTVL 648 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L 648 (820)
+|++|++++|.+++.+| ..+.++++|++|++++|++.+..+..|..+++|++|++++|.+. +.+|..+.++++|++|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 88999999999987766 68889999999999999999888889999999999999999987 5788899999999999
Q ss_pred ECCCCcCccccCcchhcCCCCccEEEcCcccccccCC--------cccCCCCCCCEEeCcCCCCccccchhccccccccc
Q 045139 649 DLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVP--------VQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTA 720 (820)
Q Consensus 649 ~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 720 (820)
++++|++++..|..+. .+++|++|++++|++++..+ ..+..+++|++|++++|+++...+..|.+++.|
T Consensus 486 ~Ls~N~l~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L-- 562 (680)
T 1ziw_A 486 DLSNNNIANINDDMLE-GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL-- 562 (680)
T ss_dssp ECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--
T ss_pred ECCCCCCCcCChhhhc-cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc--
Confidence 9999999966666666 79999999999999986422 237889999999999999984333467887777
Q ss_pred cccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCccc
Q 045139 721 NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSK 799 (820)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~ 799 (820)
+.|||++|++++..+ .+..+++|+.|+|++|++++..|..
T Consensus 563 ---------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 603 (680)
T 1ziw_A 563 ---------------------------------------KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603 (680)
T ss_dssp ---------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred ---------------------------------------ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence 899999999995555 6789999999999999999988888
Q ss_pred cc-CCCCCCeEeCCCCcCccc
Q 045139 800 IG-GLTLLNSLDLSKNMLMRA 819 (820)
Q Consensus 800 l~-~l~~L~~LdLs~N~l~g~ 819 (820)
++ .+++|+.||+++|++.+.
T Consensus 604 ~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 604 FGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp HHHHHTTCSEEECTTCCCCBC
T ss_pred hcccccccCEEEccCCCcccC
Confidence 87 789999999999999874
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-56 Score=531.00 Aligned_cols=572 Identities=22% Similarity=0.206 Sum_probs=353.4
Q ss_pred CCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCC
Q 045139 87 TGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSL 166 (820)
Q Consensus 87 ~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 166 (820)
..++++|+|++ +.+++..+..|+++++|++|++++|.+.+. .|..++++++|++|+|++|.+++..+..|+++++|
T Consensus 24 ~~~l~~L~Ls~---n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 24 PTNITVLNLTH---NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp CTTCSEEECCS---SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEECCC---CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 35799999998 888887778899999999999999999986 78889999999999999999996555579999999
Q ss_pred cEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCcc
Q 045139 167 QYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLA 246 (820)
Q Consensus 167 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~ 246 (820)
++|++++| .+....+ ..++++++|++|++++|.+++..+ ..+.++ ++|+
T Consensus 100 ~~L~L~~n-~l~~~~~--------------------------~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l-~~L~ 148 (680)
T 1ziw_A 100 TELHLMSN-SIQKIKN--------------------------NPFVKQKNLITLDLSHNGLSSTKL---GTQVQL-ENLQ 148 (680)
T ss_dssp SEEECCSS-CCCCCCS--------------------------CTTTTCTTCCEEECCSSCCSCCCC---CSSSCC-TTCC
T ss_pred CEEECCCC-ccCccCh--------------------------hHccccCCCCEEECCCCcccccCc---hhhccc-ccCC
Confidence 99999988 2221111 234555555555555555555544 334444 6666
Q ss_pred EEECcCCCCCCchhhhhhc-cCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCC-Ccchhh---hccCCCcEE
Q 045139 247 HLDLSLNDVSNSVYYWLFN-SSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSF---RNLCRLRAL 321 (820)
Q Consensus 247 ~L~Ls~n~l~~~~~~~~~~-~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~-~ip~~l---~~l~~L~~L 321 (820)
+|++++|.+++..+..+.. ..++|++|++++|.+++..|.. +..+++|+.|+++++.+. .....+ ...++|++|
T Consensus 149 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L 227 (680)
T 1ziw_A 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227 (680)
T ss_dssp EEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEE
T ss_pred EEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh-hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEE
Confidence 6666666666554444322 1136677777777666433333 666667777777666655 111111 123567777
Q ss_pred EcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccC
Q 045139 322 YQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQ 400 (820)
Q Consensus 322 ~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~ 400 (820)
++++|.+++..|..|..+.. ++|+.|++++|.+.+..|. ++.+++|++|++ ++|.+++..|..+..
T Consensus 228 ~L~~n~l~~~~~~~~~~l~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L----------~~n~l~~~~~~~~~~ 294 (680)
T 1ziw_A 228 SLSNSQLSTTSNTTFLGLKW---TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL----------EYNNIQHLFSHSLHG 294 (680)
T ss_dssp ECTTSCCCEECTTTTGGGGG---SCCCEEECTTSCCCEECTTTTTTCTTCCEEEC----------CSCCBSEECTTTTTT
T ss_pred EccCCcccccChhHhhccCc---CCCCEEECCCCCcCccCcccccCcccccEeeC----------CCCccCccChhhhcC
Confidence 77777777766666665540 1377777777777666655 666666665543 344555556666777
Q ss_pred CCCCCEEecCCCcCcccc--------CHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhh
Q 045139 401 LSQLELLDVASNSLKGMI--------TEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQ 472 (820)
Q Consensus 401 l~~L~~L~L~~n~l~~~~--------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 472 (820)
+++|+.|++++|...+.+ +...+..+++|++|++++|.+.+..+..+..
T Consensus 295 l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------- 351 (680)
T 1ziw_A 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG----------------------- 351 (680)
T ss_dssp CTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT-----------------------
T ss_pred CCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcc-----------------------
Confidence 777777777765444321 1123555666666666666655433333333
Q ss_pred cCCCccEEecCCCCccCC-CCc-hhhcc-CCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCC-CCCcc
Q 045139 473 TQNKFSELDVSAAEISDT-VPN-WFWDL-SPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPP-IPLTV 548 (820)
Q Consensus 473 ~~~~L~~L~l~~n~i~~~-~p~-~~~~~-~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~-~~~~l 548 (820)
+++|++|++++|.+... ++. .+... .++|+.|++++|++++..|..+..++.+ +.+++++|.+++.+|. .+..+
T Consensus 352 -l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~l 429 (680)
T 1ziw_A 352 -LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL-EVLDLGLNEIGQELTGQEWRGL 429 (680)
T ss_dssp -CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC-CEEECCSSCCEEECCSGGGTTC
T ss_pred -ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC-CEEeCCCCcCccccCcccccCc
Confidence 33333333333332111 010 01100 1245555555555554444444444444 4455555544443332 12221
Q ss_pred eEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeee--ecCCCCcccccCCcEEec
Q 045139 549 TSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFS--GKIPDSMDFNCMMLSLHL 626 (820)
Q Consensus 549 ~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L 626 (820)
. +|++|++++|++++..+..+..+++|++|++++|.+. +.+|..++.+++|++|++
T Consensus 430 ~----------------------~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 430 E----------------------NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp T----------------------TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred c----------------------cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 1 6677777777777666677777777777777777765 456677777777777777
Q ss_pred cCCcccccCCcchhcCCCCCEEECCCCcCccccCc--------chhcCCCCccEEEcCcccccccCCcccCCCCCCCEEe
Q 045139 627 RNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPA--------WIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLD 698 (820)
Q Consensus 627 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--------~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 698 (820)
++|++++..+..+.++++|++|++++|++++..+. .+. .+++|++|+|++|+++...+..|..+++|+.|+
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhc-CCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence 77777766666677777777777777777643211 133 567777777777777744344567777777777
Q ss_pred CcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-Ccc
Q 045139 699 LSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVT 777 (820)
Q Consensus 699 Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~ 777 (820)
+++|++++..+..|.+++.| +.|||++|++++.+| .+.
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L-----------------------------------------~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSL-----------------------------------------KSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTC-----------------------------------------CEEECTTSCCCBCCHHHHH
T ss_pred CCCCCCCcCCHhHhCCCCCC-----------------------------------------CEEECCCCcCCccChhHhc
Confidence 77777775444555666655 677777777775555 455
Q ss_pred -cccCCCEEeCCCCccccCC
Q 045139 778 -SLVGLISLNLSKNSLTGPI 796 (820)
Q Consensus 778 -~l~~L~~L~Ls~N~l~~~i 796 (820)
.+++|+.|++++|.+...-
T Consensus 606 ~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 606 PAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp HHHTTCSEEECTTCCCCBCC
T ss_pred ccccccCEEEccCCCcccCC
Confidence 5677777777777776543
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.1e-54 Score=501.76 Aligned_cols=526 Identities=20% Similarity=0.206 Sum_probs=352.5
Q ss_pred cccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhc
Q 045139 106 NISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWL 185 (820)
Q Consensus 106 ~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l 185 (820)
.+|..+.. ++++||+++|.+++. .|..|+++++|++|+|++|.+++..|..|+++++|++|++++|
T Consensus 26 ~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n----------- 91 (606)
T 3t6q_A 26 EIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN----------- 91 (606)
T ss_dssp SCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-----------
T ss_pred cCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-----------
Confidence 45554432 688999999998875 6778889999999999999888777888888888888888777
Q ss_pred cCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhc
Q 045139 186 SQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFN 265 (820)
Q Consensus 186 ~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 265 (820)
.+.+ ..+..++++++|++|++++|.+++..+ ..+..
T Consensus 92 --------------~l~~--~~~~~~~~l~~L~~L~L~~n~i~~l~~----------------------------~~~~~ 127 (606)
T 3t6q_A 92 --------------PLIF--MAETALSGPKALKHLFFIQTGISSIDF----------------------------IPLHN 127 (606)
T ss_dssp --------------CCSE--ECTTTTSSCTTCCEEECTTSCCSCGGG----------------------------SCCTT
T ss_pred --------------cccc--cChhhhcccccccEeeccccCcccCCc----------------------------chhcc
Confidence 2221 123445566666666666666655433 22223
Q ss_pred cCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCc-chhhhccCCCc--EEEcCCCCCCCcchhhhhhcccC
Q 045139 266 SSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLR--ALYQDSNNLTDLLPNLFLKLSNC 342 (820)
Q Consensus 266 ~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~~ 342 (820)
.. +|++|++++|.+++ ++...+..+++|++|++++|+++.+ |..++.+++|+ +|++++|.+++..|..|...
T Consensus 128 l~-~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~--- 202 (606)
T 3t6q_A 128 QK-TLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA--- 202 (606)
T ss_dssp CT-TCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTC---
T ss_pred CC-cccEEECCCCcccc-cCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhc---
Confidence 33 66666666666663 2211144467777777777777755 44567777777 67777777777666665542
Q ss_pred CcCCccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHH
Q 045139 343 SRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEA 421 (820)
Q Consensus 343 ~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 421 (820)
+|+.|++++|... +. +..+..++...+....+. ++....+.......+..+ +|+.|++++|.+++..+ .
T Consensus 203 ---~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~--~~~~~~i~~~~~~~l~~~-~L~~L~l~~n~l~~~~~-~ 272 (606)
T 3t6q_A 203 ---VFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFE--DMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISS-N 272 (606)
T ss_dssp ---EEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCT--TSCCCCCCGGGGGGGGGS-EEEEEECTTCCCSSCCT-T
T ss_pred ---cccccccCCchhH---HHHhhhccccchhheechhhc--cccccccChhHhchhhcC-ceeEEEeecCccCccCH-H
Confidence 4777777776521 11 222333222221111111 011111221222222222 67777777777776433 3
Q ss_pred HhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCC
Q 045139 422 HLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPN 501 (820)
Q Consensus 422 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~ 501 (820)
.|+.+++|++|++++|.++ .+|.++..+++|++|++++|.+.+..|..+..+ ++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-------------------------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~ 326 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-------------------------ELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PS 326 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-------------------------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC-TT
T ss_pred HhccccCCCEEeccCCccC-------------------------CCChhhcccccCCEEECccCCcCcCchhhhhcc-Cc
Confidence 5777777777777777664 344455556666666666666665555444443 46
Q ss_pred cEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCC
Q 045139 502 LYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDN 581 (820)
Q Consensus 502 L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n 581 (820)
|++|++++|.+.+.+|.. .+..+. +|++|++++|
T Consensus 327 L~~L~l~~n~~~~~~~~~------------------------~~~~l~----------------------~L~~L~l~~n 360 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTG------------------------CLENLE----------------------NLRELDLSHD 360 (606)
T ss_dssp CSEEECCSCSSCCBCCSS------------------------TTTTCT----------------------TCCEEECCSS
T ss_pred CCEEECCCCCcccccchh------------------------hhhccC----------------------cCCEEECCCC
Confidence 666666666555444331 011111 6777777777
Q ss_pred cccccc--CcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcc-hhcCCCCCEEECCCCcCccc
Q 045139 582 LLSGEL--PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSS-VKSFTQLTVLDLGHNKISGI 658 (820)
Q Consensus 582 ~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ 658 (820)
.+++.. |..+..+++|++|++++|++.+..|..++.+++|++|++++|++.+..|.. +..+++|++|++++|.+++.
T Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 440 (606)
T 3t6q_A 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440 (606)
T ss_dssp CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT
T ss_pred ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc
Confidence 777655 667788888888888888888888888888888888888888888776544 78888888888888888877
Q ss_pred cCcchhcCCCCccEEEcCccccccc---CCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccc
Q 045139 659 IPAWIGDSLPDLVVLSLRSNNFHGR---VPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTD 735 (820)
Q Consensus 659 ~p~~l~~~l~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~ 735 (820)
.|..+. .+++|++|++++|++++. .+..+..+++|++|++++|++++..|..+.+++.|
T Consensus 441 ~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------- 502 (606)
T 3t6q_A 441 SEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM----------------- 502 (606)
T ss_dssp CTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC-----------------
T ss_pred CHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC-----------------
Confidence 777776 688888888888888762 23567888888888888888888778888877777
Q ss_pred cccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCC
Q 045139 736 YYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN 814 (820)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N 814 (820)
+.|||++|++++.+| .+..++.| .|++++|++++.+|..++.+++|+.||+++|
T Consensus 503 ------------------------~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 503 ------------------------NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp ------------------------CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred ------------------------CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 788888888888888 88888888 8888888888888888888888888888888
Q ss_pred cCccc
Q 045139 815 MLMRA 819 (820)
Q Consensus 815 ~l~g~ 819 (820)
+++|.
T Consensus 558 ~~~c~ 562 (606)
T 3t6q_A 558 PLDCT 562 (606)
T ss_dssp CEECS
T ss_pred Ccccc
Confidence 88764
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.3e-52 Score=483.52 Aligned_cols=503 Identities=21% Similarity=0.226 Sum_probs=339.8
Q ss_pred CcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCc
Q 045139 88 GHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQ 167 (820)
Q Consensus 88 ~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 167 (820)
..++.|+|++ +.+++..|.+|+++++|++|+|++|.+.+. .|..|+++++|++|+|++|.+++..|..++++++|+
T Consensus 33 ~~l~~L~Ls~---n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 33 NSTECLEFSF---NVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp TTCCEEECTT---CCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred CcCcEEEccC---CccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence 4789999999 899988889999999999999999999885 789999999999999999999988899999999999
Q ss_pred EEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccE
Q 045139 168 YLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAH 247 (820)
Q Consensus 168 ~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~ 247 (820)
+|++++| .+.+. .+..++++++|++|++++|.+++... ..+..+ ++|++
T Consensus 109 ~L~L~~n-------------------------~i~~l--~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l-~~L~~ 157 (606)
T 3t6q_A 109 HLFFIQT-------------------------GISSI--DFIPLHNQKTLESLYLGSNHISSIKL---PKGFPT-EKLKV 157 (606)
T ss_dssp EEECTTS-------------------------CCSCG--GGSCCTTCTTCCEEECCSSCCCCCCC---CTTCCC-TTCCE
T ss_pred Eeecccc-------------------------CcccC--CcchhccCCcccEEECCCCcccccCc---ccccCC-cccCE
Confidence 9999988 22221 12345667777777777777776433 233334 88888
Q ss_pred EECcCCCCCCchhhhhhccCCCCc--EEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCC
Q 045139 248 LDLSLNDVSNSVYYWLFNSSSSLV--YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDS 325 (820)
Q Consensus 248 L~Ls~n~l~~~~~~~~~~~~~~L~--~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~ 325 (820)
|++++|.+++..+..+.... +|+ +|++++|.+++..|.. +. ..+|++|++++|. .++..+..+.+++...+..
T Consensus 158 L~L~~n~l~~~~~~~~~~l~-~L~~l~L~l~~n~l~~~~~~~-~~-~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~ 232 (606)
T 3t6q_A 158 LDFQNNAIHYLSKEDMSSLQ-QATNLSLNLNGNDIAGIEPGA-FD-SAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWL 232 (606)
T ss_dssp EECCSSCCCEECHHHHHTTT-TCCSEEEECTTCCCCEECTTT-TT-TCEEEEEECTTCS--CHHHHHHHTTTCEEEEEEC
T ss_pred EEcccCcccccChhhhhhhc-ccceeEEecCCCccCccChhH-hh-hccccccccCCch--hHHHHhhhccccchhheec
Confidence 88888888876677666666 888 8899999988544433 44 4688999998886 5566666676665554433
Q ss_pred CCCC-----CcchhhhhhcccCCcCCccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCccccccccccc
Q 045139 326 NNLT-----DLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIG 399 (820)
Q Consensus 326 n~l~-----~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~ 399 (820)
..+. ...+..|..+.. .+|+.|++++|.+.+..+. ++.+++|++|++++|.+ + .+|..+.
T Consensus 233 ~~~~~~~~~~i~~~~~~~l~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----------~-~lp~~l~ 298 (606)
T 3t6q_A 233 GTFEDMDDEDISPAVFEGLCE---MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL----------S-ELPSGLV 298 (606)
T ss_dssp CCCTTSCCCCCCGGGGGGGGG---SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC----------S-CCCSSCC
T ss_pred hhhccccccccChhHhchhhc---CceeEEEeecCccCccCHHHhccccCCCEEeccCCcc----------C-CCChhhc
Confidence 3222 223344444431 1588888888888877666 77888888776554443 3 5677788
Q ss_pred CCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccE
Q 045139 400 QLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSE 479 (820)
Q Consensus 400 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 479 (820)
.+++|++|++++|.+++..|. .+..+++|++|++++|.+.+.++.. .+..+++|++
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~-----------------------~~~~l~~L~~ 354 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQI-SASNFPSLTHLSIKGNTKRLELGTG-----------------------CLENLENLRE 354 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGGG-CGGGCTTCSEEECCSCSSCCBCCSS-----------------------TTTTCTTCCE
T ss_pred ccccCCEEECccCCcCcCchh-hhhccCcCCEEECCCCCcccccchh-----------------------hhhccCcCCE
Confidence 888888888888888875554 6788888888888888776443332 3455666666
Q ss_pred EecCCCCccCCC--CchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcc
Q 045139 480 LDVSAAEISDTV--PNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNM 557 (820)
Q Consensus 480 L~l~~n~i~~~~--p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~ 557 (820)
|++++|.+.+.. |..+..+ ++|++|++++|++.+..|..+..++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~--------------------------------- 400 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNL-SHLQSLNLSYNEPLSLKTEAFKECP--------------------------------- 400 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTC-TTCCEEECCSCSCEEECTTTTTTCT---------------------------------
T ss_pred EECCCCccccccCcchhcccC-CCCCEEECCCCcCCcCCHHHhcCCc---------------------------------
Confidence 666666665543 3334332 5666666666666554444332222
Q ss_pred cccccchhhccccccccEEEccCCccccccCc-ccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCccccc--
Q 045139 558 FSGSLSFLCQISDEHFRYLDLSDNLLSGELPN-CSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGE-- 634 (820)
Q Consensus 558 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-- 634 (820)
+|++|++++|++++..|. .+..+++|++|++++|++.+..|..++.+++|++|++++|++.+.
T Consensus 401 --------------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 466 (606)
T 3t6q_A 401 --------------QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466 (606)
T ss_dssp --------------TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE
T ss_pred --------------cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc
Confidence 455555555555544433 255566666666666666655555666666666666666666542
Q ss_pred -CCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcc
Q 045139 635 -LPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLN 713 (820)
Q Consensus 635 -~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 713 (820)
.+..+..+++|++|++++|++++..|..+. .+++|++|++++|++++..|..+..++.| .|++++|++++..|..+.
T Consensus 467 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~ 544 (606)
T 3t6q_A 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFT-SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP 544 (606)
T ss_dssp CSSCGGGGCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH
T ss_pred ccchhhccCCCccEEECCCCccCccChhhhc-cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc
Confidence 224456666666666666666655555555 56666666666666666666666666666 666666666655555555
Q ss_pred ccccc
Q 045139 714 NLTAM 718 (820)
Q Consensus 714 ~l~~L 718 (820)
.++.|
T Consensus 545 ~l~~L 549 (606)
T 3t6q_A 545 ILSQQ 549 (606)
T ss_dssp HHHTS
T ss_pred cCCCC
Confidence 55555
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-52 Score=489.13 Aligned_cols=530 Identities=20% Similarity=0.189 Sum_probs=300.2
Q ss_pred EEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCC
Q 045139 93 LNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLS 172 (820)
Q Consensus 93 L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 172 (820)
++.++ .+++ .+|..+. +++++|++++|.+++. .|..|+++++|++|+|++|.+++..|..|+++++|++|+++
T Consensus 16 ~~c~~---~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 16 YQCMD---QKLS-KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp EECTT---SCCS-SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred eEccC---CCcc-cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 44444 4443 4565554 7899999999999875 66689999999999999999998888889999999999999
Q ss_pred CCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCC-CCccccccccCCcCCccEEECc
Q 045139 173 FNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPS-VIASSSVSFSNSSRSLAHLDLS 251 (820)
Q Consensus 173 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~~~~~L~~L~Ls 251 (820)
+| .+....+..++++++|++|++++|.+.+.. +..++++++|++|++++|.+.+ .+| ..++++ ++|++|+++
T Consensus 89 ~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~lp---~~~~~l-~~L~~L~Ls 161 (606)
T 3vq2_A 89 GN-PIQSFSPGSFSGLTSLENLVAVETKLASLE--SFPIGQLITLKKLNVAHNFIHSCKLP---AYFSNL-TNLVHVDLS 161 (606)
T ss_dssp TC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSS--SSCCTTCTTCCEEECCSSCCCCCCCC---GGGGTC-TTCCEEECC
T ss_pred CC-cccccChhhcCCcccCCEEEccCCcccccc--ccccCCCCCCCEEeCCCCcccceech---HhHhhc-CCCCEEEcc
Confidence 88 233333455666666666666666665532 1235556666666666665554 234 344444 555555555
Q ss_pred CCCCCCchhhhhhccCCC----CcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCC--CcchhhhccCCCcEEEcCC
Q 045139 252 LNDVSNSVYYWLFNSSSS----LVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV--SVPKSFRNLCRLRALYQDS 325 (820)
Q Consensus 252 ~n~l~~~~~~~~~~~~~~----L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~--~ip~~l~~l~~L~~L~L~~ 325 (820)
+|.+++..+..+.... + +++|++++|.++ .++...+... +|++|++++|.++ .+|..+.+++.|+.+++..
T Consensus 162 ~n~l~~~~~~~~~~l~-~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 162 YNYIQTITVNDLQFLR-ENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp SSCCCEECTTTTHHHH-HCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCcceecChhhhhhhh-ccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccc
Confidence 5555544444333322 2 235555555555 3443323332 4555555555554 3344455555555444433
Q ss_pred CCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEc-cCCcccccccccccCCCCC
Q 045139 326 NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYL-NNNRFTGTLTKSIGQLSQL 404 (820)
Q Consensus 326 n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L-~~n~l~~~~~~~l~~l~~L 404 (820)
+.+.+.. .+ . .++ ...+..+..+ .++.+++ ..+.+.+.+|. +..+++|
T Consensus 239 ~~~~~~~-------------~l----------~-~~~-~~~~~~l~~l-----~l~~l~l~~~~~~~~~~~~-~~~l~~L 287 (606)
T 3vq2_A 239 GEFKDER-------------NL----------E-IFE-PSIMEGLCDV-----TIDEFRLTYTNDFSDDIVK-FHCLANV 287 (606)
T ss_dssp ECCTTSC-------------CC----------S-CCC-GGGGTTGGGS-----EEEEEEECCCTTCCGGGGS-CGGGTTC
T ss_pred cccccCC-------------cc----------c-ccC-hHHhhhhhhc-----cHhheeccccccccccccc-cccCCCC
Confidence 2222110 00 0 000 0011111111 1123333 34455555554 5555666
Q ss_pred CEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCC
Q 045139 405 ELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSA 484 (820)
Q Consensus 405 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 484 (820)
+.|++++|.+.. +| .+..+++|++|++++|.+
T Consensus 288 ~~L~l~~~~~~~-l~--~l~~~~~L~~L~l~~n~l--------------------------------------------- 319 (606)
T 3vq2_A 288 SAMSLAGVSIKY-LE--DVPKHFKWQSLSIIRCQL--------------------------------------------- 319 (606)
T ss_dssp SEEEEESCCCCC-CC--CCCTTCCCSEEEEESCCC---------------------------------------------
T ss_pred CEEEecCccchh-hh--hccccccCCEEEcccccC---------------------------------------------
Confidence 666666665543 33 344555555555555544
Q ss_pred CCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccch
Q 045139 485 AEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSF 564 (820)
Q Consensus 485 n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~ 564 (820)
+.+|.. ..++|+.|++++|+..+..+ +..++
T Consensus 320 ----~~lp~~---~l~~L~~L~l~~n~~~~~~~--~~~l~---------------------------------------- 350 (606)
T 3vq2_A 320 ----KQFPTL---DLPFLKSLTLTMNKGSISFK--KVALP---------------------------------------- 350 (606)
T ss_dssp ----SSCCCC---CCSSCCEEEEESCSSCEECC--CCCCT----------------------------------------
T ss_pred ----cccccC---CCCccceeeccCCcCccchh--hccCC----------------------------------------
Confidence 233321 12445555555543222110 00000
Q ss_pred hhccccccccEEEccCCccccc--cCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCC-cchhc
Q 045139 565 LCQISDEHFRYLDLSDNLLSGE--LPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP-SSVKS 641 (820)
Q Consensus 565 ~~~~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~ 641 (820)
+|++|++++|.+++. +|..+..+++|++|++++|++++ +|..+..+++|++|++++|++.+..| ..+..
T Consensus 351 -------~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 351 -------SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp -------TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred -------CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhc
Confidence 555666666655544 25566666666666666666653 44566666666666666666666555 45666
Q ss_pred CCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccc-cCCcccCCCCCCCEEeCcCCCCccccchhccccccccc
Q 045139 642 FTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHG-RVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTA 720 (820)
Q Consensus 642 l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 720 (820)
+++|++|++++|++++..|..+. .+++|++|++++|++++ .+|..+..+++|+.|++++|++++..|..+.+++.|
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-- 499 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL-- 499 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC--
T ss_pred cccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC--
Confidence 66666666666666666666555 56666666666666665 356666666666666666666666666666665555
Q ss_pred cccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCccc
Q 045139 721 NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSK 799 (820)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~ 799 (820)
+.|+|++|++++.+| .++.+++|++|++++|+++ .+|..
T Consensus 500 ---------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 500 ---------------------------------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp ---------------------------------------CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred ---------------------------------------CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence 566666666666656 6666666666666666666 45555
Q ss_pred ccCCC-CCCeEeCCCCcCcc
Q 045139 800 IGGLT-LLNSLDLSKNMLMR 818 (820)
Q Consensus 800 l~~l~-~L~~LdLs~N~l~g 818 (820)
+..++ +|++||+++|++++
T Consensus 540 ~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 540 LQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp GGGSCTTCCEEECCSCCCCC
T ss_pred HhhhcccCcEEEccCCCccc
Confidence 66665 46666666666655
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.7e-54 Score=502.39 Aligned_cols=496 Identities=19% Similarity=0.268 Sum_probs=308.7
Q ss_pred CcCCHHHHHHHHHhhccCCCCC--------CCCCCCCCCCCCCCCccc---CceEecCCCCcEEEEEcCCCCCCCCcccc
Q 045139 39 IKCIERERQALLMFKQGLIDEY--------GHLSSWGNEDDKKDCCKW---RGVSCSNQTGHVTMLNLQFRSYMPLRGNI 107 (820)
Q Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~--------~~~~~W~~~~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~l~g~i 107 (820)
......|+.||.++++++.++. ...++|. .+.+||.| .||+|+.. |||+.|+|++ +++.|.+
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~---~~l~g~l 97 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEG---FGASGRV 97 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTT---SCCEEEE
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecC---cccCCcC
Confidence 3355679999999999886432 2345897 47899999 99999754 8999999999 9999999
Q ss_pred cccccCCCCCCEEECcCCCCCCc-----------ccCccccCCCCCCEEeccCCCCCCCCCccCCCC-CCCcEEeCCCCc
Q 045139 108 SSSLIGLQHLNYLNMKYNDFGGK-----------QIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNL-TSLQYLDLSFNF 175 (820)
Q Consensus 108 ~~~l~~l~~L~~L~Ls~n~l~~~-----------~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~ 175 (820)
|++++++++|++|||++|.+... .+|... +.+|+ ++++++.+.+.+|..++.+ ..+..+++...
T Consensus 98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~- 173 (636)
T 4eco_A 98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQK- 173 (636)
T ss_dssp CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSC-
T ss_pred ChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccc-
Confidence 99999999999999999976210 133333 45566 7777777776666555421 11112221111
Q ss_pred cccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEEC--cCC
Q 045139 176 DMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDL--SLN 253 (820)
Q Consensus 176 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L--s~n 253 (820)
.+.. ... ..++.+.+ ..|
T Consensus 174 ------------------------~~~~--------~~~----------------------------~~l~~l~l~~~~n 193 (636)
T 4eco_A 174 ------------------------SIKK--------SSR----------------------------ITLKDTQIGQLSN 193 (636)
T ss_dssp ------------------------CCCC--------CCC----------------------------CCCCTTTTTCCSC
T ss_pred ------------------------cccc--------ccc----------------------------cchhhhhhccccC
Confidence 0000 000 11111111 234
Q ss_pred CCCCchhhhhhccCCCCcEEEccCCcccCC-----------------CCCCCCC--CCCCCCEEECCCCCCC-Ccchhhh
Q 045139 254 DVSNSVYYWLFNSSSSLVYLDLSSNKLQGP-----------------IPDSAFP--NPTSLSYLDLSNNQLV-SVPKSFR 313 (820)
Q Consensus 254 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~-----------------ip~~~l~--~l~~L~~L~Ls~n~l~-~ip~~l~ 313 (820)
.+++ +|..+.++. +|++|++++|.++|. +|.. ++ ++++|++|++++|++. .+|..|+
T Consensus 194 ~l~~-ip~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 194 NITF-VSKAVMRLT-KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp EEEE-ECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCcc-CCHHHhccc-CCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHh
Confidence 5555 565555555 666666666666653 6665 66 6666777777666655 5666666
Q ss_pred ccCCCcEEEcCCCC-CCC-cchhhhhhc------ccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEc
Q 045139 314 NLCRLRALYQDSNN-LTD-LLPNLFLKL------SNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYL 385 (820)
Q Consensus 314 ~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L 385 (820)
++++|++|++++|+ +++ .+|..+..+ + +|++|++++|.++
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-----~L~~L~L~~n~l~--------------------------- 318 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGE-----KIQIIYIGYNNLK--------------------------- 318 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG-----TCCEEECCSSCCS---------------------------
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCC-----CCCEEECCCCcCC---------------------------
Confidence 77777777777776 666 666666554 2 3444444443333
Q ss_pred cCCcccccccc--cccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccC
Q 045139 386 NNNRFTGTLTK--SIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQ 463 (820)
Q Consensus 386 ~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~ 463 (820)
.+|. .++++++|++|++++|+++|.+| .++.+++|++|++++|.+.
T Consensus 319 -------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~----------------------- 366 (636)
T 4eco_A 319 -------TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT----------------------- 366 (636)
T ss_dssp -------SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-----------------------
T ss_pred -------ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-----------------------
Confidence 3333 45555555555555555554444 3444444444444444432
Q ss_pred CCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCC-cEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCC
Q 045139 464 GPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPN-LYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIP 542 (820)
Q Consensus 464 ~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p 542 (820)
.+|.++..+ ++ |++|++++|+++ .+|..+....
T Consensus 367 --------------------------~lp~~l~~l-~~~L~~L~Ls~N~l~-~lp~~~~~~~------------------ 400 (636)
T 4eco_A 367 --------------------------EIPANFCGF-TEQVENLSFAHNKLK-YIPNIFDAKS------------------ 400 (636)
T ss_dssp --------------------------ECCTTSEEE-CTTCCEEECCSSCCS-SCCSCCCTTC------------------
T ss_pred --------------------------cccHhhhhh-cccCcEEEccCCcCc-ccchhhhhcc------------------
Confidence 222222222 23 555555555444 2332111100
Q ss_pred CCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccc-------cCCCCcEEEcCCCeeeecCCC-C
Q 045139 543 PIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSK-------NWQKLTVLNLANNKFSGKIPD-S 614 (820)
Q Consensus 543 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~-~ 614 (820)
+ .+|++|++++|.+++.+|..+. .+++|++|++++|++++ +|. .
T Consensus 401 -----l----------------------~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~ 452 (636)
T 4eco_A 401 -----V----------------------SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKEL 452 (636)
T ss_dssp -----S----------------------SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHH
T ss_pred -----c----------------------CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHH
Confidence 0 0678888888888888888777 77788888888888884 444 3
Q ss_pred cccccCCcEEeccCCcccccCCcch-hcC-------CCCCEEECCCCcCccccCcchh-cCCCCccEEEcCcccccccCC
Q 045139 615 MDFNCMMLSLHLRNNSFIGELPSSV-KSF-------TQLTVLDLGHNKISGIIPAWIG-DSLPDLVVLSLRSNNFHGRVP 685 (820)
Q Consensus 615 l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l-------~~L~~L~Ls~N~l~~~~p~~l~-~~l~~L~~L~L~~N~l~~~~p 685 (820)
+..+++|++|++++|+++ .+|... ... ++|++|++++|+++ .+|..++ ..+++|+.|+|++|++++ +|
T Consensus 453 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip 529 (636)
T 4eco_A 453 FSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FP 529 (636)
T ss_dssp HHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred HccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cC
Confidence 455788888888888887 444433 322 27888888888887 6776664 357788888888888886 77
Q ss_pred cccCCCCCCCEEeC------cCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCce
Q 045139 686 VQVCHLQRIQVLDL------SQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLV 759 (820)
Q Consensus 686 ~~l~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 759 (820)
..+..+++|+.|++ ++|++.+.+|..+.+++.|
T Consensus 530 ~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L----------------------------------------- 568 (636)
T 4eco_A 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL----------------------------------------- 568 (636)
T ss_dssp CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC-----------------------------------------
T ss_pred hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC-----------------------------------------
Confidence 77778888888888 4466667777777766666
Q ss_pred EEEECCCCcCeecCC-CcccccCCCEEeCCCCccc
Q 045139 760 KSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT 793 (820)
Q Consensus 760 ~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~ 793 (820)
+.|||++|++ +.|| .+. ++|+.|++++|++.
T Consensus 569 ~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 569 TQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 6777777777 4677 544 67777777777655
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.8e-51 Score=475.34 Aligned_cols=509 Identities=19% Similarity=0.176 Sum_probs=348.8
Q ss_pred CCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCC
Q 045139 87 TGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSL 166 (820)
Q Consensus 87 ~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 166 (820)
..+++.|+|++ +.+++..+..|.++++|++|++++|.+++. .|..|+++++|++|+|++|.+++..|..|+++++|
T Consensus 31 ~~~l~~L~Ls~---n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 31 PSSTKNIDLSF---NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp CTTCCEEECTT---SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCCcCEEECCC---CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 35799999999 889988888999999999999999999885 68889999999999999999998889999999999
Q ss_pred cEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCcc
Q 045139 167 QYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLA 246 (820)
Q Consensus 167 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~ 246 (820)
++|++++| ......+..++++++|++|++++|.+.+. .+|..++++++|++|++++|.+++..+..+..+.++...++
T Consensus 107 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 107 ENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp CEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred CEEEccCC-ccccccccccCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 99999999 33344445689999999999999999764 35778999999999999999999988854444444422366
Q ss_pred EEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCC
Q 045139 247 HLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSN 326 (820)
Q Consensus 247 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n 326 (820)
+|++++|.++ .++...+... +|++|++++|.+++......+++++.|+.+++..+.+.... .+
T Consensus 185 ~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-------~l-------- 247 (606)
T 3vq2_A 185 SLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER-------NL-------- 247 (606)
T ss_dssp EEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC-------CC--------
T ss_pred eeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC-------cc--------
Confidence 9999999998 4556666666 89999999999875443344889999999988655443110 00
Q ss_pred CCCCcchhhhhhcccCCcCCccEEEc-CCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCC
Q 045139 327 NLTDLLPNLFLKLSNCSRDTLEILQL-NSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLE 405 (820)
Q Consensus 327 ~l~~~~~~~~~~l~~~~~~~L~~L~L-~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~ 405 (820)
....+..+..+... .++.+++ ..|.+.+.+|.+..+++|+.|++++|. +. .+| .+..+++|+
T Consensus 248 --~~~~~~~~~~l~~l---~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------~~-~l~-~l~~~~~L~ 310 (606)
T 3vq2_A 248 --EIFEPSIMEGLCDV---TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS----------IK-YLE-DVPKHFKWQ 310 (606)
T ss_dssp --SCCCGGGGTTGGGS---EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC----------CC-CCC-CCCTTCCCS
T ss_pred --cccChHHhhhhhhc---cHhheeccccccccccccccccCCCCCEEEecCcc----------ch-hhh-hccccccCC
Confidence 01111111111100 3455555 455555555555555666655443333 22 233 566667777
Q ss_pred EEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCC
Q 045139 406 LLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAA 485 (820)
Q Consensus 406 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 485 (820)
.|++++|.+ +.+|. + .+++|++|++++|+..... .+..+++|++|++++|
T Consensus 311 ~L~l~~n~l-~~lp~--~-~l~~L~~L~l~~n~~~~~~--------------------------~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 311 SLSIIRCQL-KQFPT--L-DLPFLKSLTLTMNKGSISF--------------------------KKVALPSLSYLDLSRN 360 (606)
T ss_dssp EEEEESCCC-SSCCC--C-CCSSCCEEEEESCSSCEEC--------------------------CCCCCTTCCEEECCSS
T ss_pred EEEcccccC-ccccc--C-CCCccceeeccCCcCccch--------------------------hhccCCCCCEEECcCC
Confidence 777777777 44553 3 6677777777776442211 1223444555555555
Q ss_pred CccCC--CCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccc
Q 045139 486 EISDT--VPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLS 563 (820)
Q Consensus 486 ~i~~~--~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~ 563 (820)
.+++. +|..+... ++|++|++++|.+++.. . .+..+.
T Consensus 361 ~l~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~-~-------------------------~~~~l~-------------- 399 (606)
T 3vq2_A 361 ALSFSGCCSYSDLGT-NSLRHLDLSFNGAIIMS-A-------------------------NFMGLE-------------- 399 (606)
T ss_dssp CEEEEEECCHHHHCC-SCCCEEECCSCSEEEEC-C-------------------------CCTTCT--------------
T ss_pred ccCCCcchhhhhccC-CcccEeECCCCccccch-h-------------------------hccCCC--------------
Confidence 44433 23333332 34555555555443211 1 111111
Q ss_pred hhhccccccccEEEccCCccccccC-cccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccc-cCCcchhc
Q 045139 564 FLCQISDEHFRYLDLSDNLLSGELP-NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG-ELPSSVKS 641 (820)
Q Consensus 564 ~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~ 641 (820)
+|+.|++++|++++..| ..+..+++|++|++++|++.+..|..++.+++|++|++++|++++ .+|..+..
T Consensus 400 --------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 400 --------ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp --------TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred --------CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence 66777777777776666 567777777777777777777777777777777777777777776 36777777
Q ss_pred CCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccc
Q 045139 642 FTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLT 716 (820)
Q Consensus 642 l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 716 (820)
+++|++|++++|++++..|..+. .+++|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+..++
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFD-TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred CCCCCEEECCCCcCCccChhhhc-ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence 77777777777777766666665 6777777777777777777777777777777777777776 5666555554
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-51 Score=487.41 Aligned_cols=489 Identities=18% Similarity=0.223 Sum_probs=316.2
Q ss_pred CCCcCCHHHHHHHHHhhccCCCCCCCCCCCCCCC--CCCCC--ccc------------CceEecCCCCcEEEEEcCCCCC
Q 045139 37 ADIKCIERERQALLMFKQGLIDEYGHLSSWGNED--DKKDC--CKW------------RGVSCSNQTGHVTMLNLQFRSY 100 (820)
Q Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~ 100 (820)
..+.+..+|++||++||+++.+| +|+... ...+| |.| .||+|+. .+||+.|+|++
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~--- 332 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG--- 332 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT---
T ss_pred cccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc---
Confidence 34456788999999999999876 886411 01345 999 9999975 68999999999
Q ss_pred CCCcccccccccCCCCCCEEEC-cCCCCCCcccCcccc------------------------------------------
Q 045139 101 MPLRGNISSSLIGLQHLNYLNM-KYNDFGGKQIPAFIG------------------------------------------ 137 (820)
Q Consensus 101 ~~l~g~i~~~l~~l~~L~~L~L-s~n~l~~~~~p~~i~------------------------------------------ 137 (820)
+++.|.+|++|++|++|++||| ++|.+.|. .|....
T Consensus 333 ~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 9999999999999999999999 88877664 221110
Q ss_pred ---------CCCCCCEEeccC--CCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCC--
Q 045139 138 ---------SLKNIRHLDLSN--AGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEA-- 204 (820)
Q Consensus 138 ---------~l~~L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-- 204 (820)
....++.+.+.. |.+++ +|..++++++|++|+|++ |.+++.
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~-------------------------N~Lsg~~i 465 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFAN-------------------------SPFTYDNI 465 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEES-------------------------CCCCGGGB
T ss_pred ccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcC-------------------------CcCCCCcc
Confidence 111122222222 44443 454555555555555554 454440
Q ss_pred -------------ccHHHHhC--CCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCC-CCC-chhhhhhccC
Q 045139 205 -------------TDWLQVVS--QLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLND-VSN-SVYYWLFNSS 267 (820)
Q Consensus 205 -------------~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~-l~~-~~~~~~~~~~ 267 (820)
..+|..++ ++++|++|+|++|.+.+.+| ..+.++ ++|++|++++|. +++ .+|..+..+.
T Consensus 466 ~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP---~~l~~L-~~L~~L~Ls~N~~lsg~~iP~~i~~L~ 541 (876)
T 4ecn_A 466 AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP---DFLYDL-PELQSLNIACNRGISAAQLKADWTRLA 541 (876)
T ss_dssp SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC---GGGGGC-SSCCEEECTTCTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh---HHHhCC-CCCCEEECcCCCCcccccchHHHHhhh
Confidence 02566666 88888888888888888888 566777 888888888887 877 7777665432
Q ss_pred ------CCCcEEEccCCcccCCCCC--CCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhc
Q 045139 268 ------SSLVYLDLSSNKLQGPIPD--SAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKL 339 (820)
Q Consensus 268 ------~~L~~L~Ls~n~l~g~ip~--~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 339 (820)
++|++|++++|.++ .+|. . ++++++|++|++++|+++.+| .|+.+++|++|++++|+++ .+|..+..+
T Consensus 542 ~~~~~l~~L~~L~Ls~N~L~-~ip~~~~-l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l 617 (876)
T 4ecn_A 542 DDEDTGPKIQIFYMGYNNLE-EFPASAS-LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAF 617 (876)
T ss_dssp HCTTTTTTCCEEECCSSCCC-BCCCHHH-HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEE
T ss_pred hcccccCCccEEEeeCCcCC-ccCChhh-hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhc
Confidence 47888888888888 7887 5 888888888888888888888 7888888888888888888 677777777
Q ss_pred ccCCcCC-ccEEEcCCCCCcccCCC-CcCcCC--CcEEecCCCcccEEEccCCcccccccc---ccc--CCCCCCEEecC
Q 045139 340 SNCSRDT-LEILQLNSNMLRGSLPD-ITLFSS--LKELHLYDNMLDVLYLNNNRFTGTLTK---SIG--QLSQLELLDVA 410 (820)
Q Consensus 340 ~~~~~~~-L~~L~L~~n~l~~~~p~-~~~l~~--L~~L~l~~n~L~~L~L~~n~l~~~~~~---~l~--~l~~L~~L~L~ 410 (820)
+ + |+.|++++|.+. .+|. +..++. |+.| ++++|.+.+.+|. .+. .+++|+.|+++
T Consensus 618 ~-----~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L----------~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 618 T-----DQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSV----------DFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp C-----TTCCEEECCSSCCC-SCCSCCCTTCSSCEEEE----------ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred c-----ccCCEEECcCCCCC-cCchhhhccccCCCCEE----------ECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence 7 6 888888888887 5555 443322 5544 4445555554432 122 23467777777
Q ss_pred CCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCC
Q 045139 411 SNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDT 490 (820)
Q Consensus 411 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~ 490 (820)
+|.++. +|...+..+++|+.|++++|++. .
T Consensus 682 ~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~------------------------------------------------ 711 (876)
T 4ecn_A 682 YNEIQK-FPTELFATGSPISTIILSNNLMT-S------------------------------------------------ 711 (876)
T ss_dssp SSCCCS-CCHHHHHTTCCCSEEECCSCCCS-C------------------------------------------------
T ss_pred CCcCCc-cCHHHHccCCCCCEEECCCCcCC-c------------------------------------------------
Confidence 777764 55545556677777777666653 1
Q ss_pred CCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhcccc
Q 045139 491 VPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISD 570 (820)
Q Consensus 491 ~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~ 570 (820)
+|..++.... + ...++.
T Consensus 712 ip~~~~~~~~----------------~--------------------------~l~nl~--------------------- 728 (876)
T 4ecn_A 712 IPENSLKPKD----------------G--------------------------NYKNTY--------------------- 728 (876)
T ss_dssp CCTTSSSCTT----------------S--------------------------CCTTGG---------------------
T ss_pred cChHHhcccc----------------c--------------------------cccccC---------------------
Confidence 1111111000 0 000000
Q ss_pred ccccEEEccCCccccccCcccc--cCCCCcEEEcCCCeeeecCCCCcccccCCcEEec------cCCcccccCCcchhcC
Q 045139 571 EHFRYLDLSDNLLSGELPNCSK--NWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHL------RNNSFIGELPSSVKSF 642 (820)
Q Consensus 571 ~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~l~~l 642 (820)
+|+.|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..+.++
T Consensus 729 -~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 729 -LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp -GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred -CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 3444444444444 3444443 44444555555554443 4444444445555544 4477777777777777
Q ss_pred CCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCc
Q 045139 643 TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS 705 (820)
Q Consensus 643 ~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 705 (820)
++|++|+|++|++ +.+|..+. ++|+.|+|++|++....+..++....+..+.|.+|+..
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCCC---SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CCCCEEECCCCCC-CccCHhhc---CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 7777777777777 57777643 47777777777777655555555555556666666554
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-50 Score=483.04 Aligned_cols=520 Identities=22% Similarity=0.239 Sum_probs=251.3
Q ss_pred CCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCC-CccCCCCCCCcEEeCCCCccccccchhhccCCCCCCe
Q 045139 115 QHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRV-PYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEY 193 (820)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 193 (820)
++|++|||++|.+++. .|..|+++++|++|+|++|...+.+ |.+|+++++|++|+|++|
T Consensus 24 ~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N------------------- 83 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS------------------- 83 (844)
T ss_dssp TTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-------------------
T ss_pred CCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-------------------
Confidence 4556666666665553 4555566666666666665444444 444555555555555544
Q ss_pred eeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhh-hhhccCCCCcE
Q 045139 194 VRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYY-WLFNSSSSLVY 272 (820)
Q Consensus 194 L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~L~~ 272 (820)
.+.+ ..|..++++++|++|+|++|.+++..+.. ..+.++ ++|++|++++|.+++..+. .+.++. +|++
T Consensus 84 ------~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~L~-~L~~ 152 (844)
T 3j0a_A 84 ------KIYF--LHPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRNL-KALTRLDLSKNQIRSLYLHPSFGKLN-SLKS 152 (844)
T ss_dssp ------CCCE--ECTTSSCSCSSCCCEECTTCCCSSCCSTT-CCCSSC-SSCCEEEEESCCCCCCCCCGGGGTCS-SCCE
T ss_pred ------cCcc--cCHhHccCCcccCEeeCcCCCCCcccccC-cccccc-CCCCEEECCCCcccccccchhHhhCC-CCCE
Confidence 3332 12445666666666666666666544310 113444 5555555555555443332 222222 4555
Q ss_pred EEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhcc--CCCcEEEcCCCCCCCcchhhhhhccc-CCcCCccE
Q 045139 273 LDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNL--CRLRALYQDSNNLTDLLPNLFLKLSN-CSRDTLEI 349 (820)
Q Consensus 273 L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~-~~~~~L~~ 349 (820)
|++++|.+++..+ ..+..+ ++|+.|+++.|.+.+..|..+..+.. .....|+.
T Consensus 153 L~Ls~N~i~~~~~------------------------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~ 208 (844)
T 3j0a_A 153 IDFSSNQIFLVCE------------------------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208 (844)
T ss_dssp EEEESSCCCCCCS------------------------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSE
T ss_pred EECCCCcCCeeCH------------------------HHcccccCCccceEECCCCccccccccchhhcCCccccCceeE
Confidence 5555554443333 333333 44444444444444444433332220 00002455
Q ss_pred EEcCCCCCcccCCC-CcC---cCCCcEEecCCCcccEEEccCCcccccccccccCC--CCCCEEecCCCcCccccCHHHh
Q 045139 350 LQLNSNMLRGSLPD-ITL---FSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQL--SQLELLDVASNSLKGMITEAHL 423 (820)
Q Consensus 350 L~L~~n~l~~~~p~-~~~---l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~l 423 (820)
|++++|.+.+..+. +.. .+.++.+.+..+... -....+.+.+..+..+..+ ++|+.|++++|.+.+..+. .+
T Consensus 209 L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~-~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~-~~ 286 (844)
T 3j0a_A 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG-AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR-VF 286 (844)
T ss_dssp EBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB-CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC-CS
T ss_pred EecCCCcCchhHHHHHHhhcCcccccceeccccccc-ccccccccCCCChhhhhccccCCccEEECCCCcccccChh-hh
Confidence 55555554444443 211 123333333321110 1112233333333444443 5667777777766664443 56
Q ss_pred hcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcE
Q 045139 424 SNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLY 503 (820)
Q Consensus 424 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~ 503 (820)
..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+..+ ++|+
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~ 341 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIAD------------------------EAFYGLDNLQVLNLSYNLLGELYSSNFYGL-PKVA 341 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECT------------------------TTTTTCSSCCEEEEESCCCSCCCSCSCSSC-TTCC
T ss_pred hcCCCCCEEECCCCcCCCCCh------------------------HHhcCCCCCCEEECCCCCCCccCHHHhcCC-CCCC
Confidence 666667777766666654433 344455555555555555555445444433 4566
Q ss_pred EEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCcc
Q 045139 504 YLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLL 583 (820)
Q Consensus 504 ~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l 583 (820)
.|++++|++.+..+..+..++ +|++|++++|.+
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~-----------------------------------------------~L~~L~Ls~N~l 374 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLE-----------------------------------------------KLQTLDLRDNAL 374 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCC-----------------------------------------------CCCEEEEETCCS
T ss_pred EEECCCCCCCccChhhhcCCC-----------------------------------------------CCCEEECCCCCC
Confidence 666666655544443332222 334444444443
Q ss_pred ccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccC-CcchhcCCCCCEEECCCCcCccccCcc
Q 045139 584 SGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGEL-PSSVKSFTQLTVLDLGHNKISGIIPAW 662 (820)
Q Consensus 584 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 662 (820)
++ + ..+++|+.|++++|+++ .+|.. ..+++.|++++|++.+.. +..+.++++|++|++++|++++..+..
T Consensus 375 ~~-i----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 445 (844)
T 3j0a_A 375 TT-I----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445 (844)
T ss_dssp CC-C----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred Cc-c----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence 31 1 11344444444444444 22222 234445555555554321 122334555555555555555433322
Q ss_pred hhcCCCCccEEEcCccccc-----ccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccc
Q 045139 663 IGDSLPDLVVLSLRSNNFH-----GRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYY 737 (820)
Q Consensus 663 l~~~l~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~ 737 (820)
....+++|+.|++++|.++ +..|..+..+++|+.|+|++|++++..|..+.+++.|
T Consensus 446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------------- 506 (844)
T 3j0a_A 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL------------------- 506 (844)
T ss_dssp SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC-------------------
T ss_pred ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh-------------------
Confidence 2223455555555555554 2333445555666666666666665555555555555
Q ss_pred cCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcC
Q 045139 738 NDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816 (820)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l 816 (820)
+.|||++|++++.+| .+. ++|+.|+|++|++++.+|+.| .+|+.|++++|++
T Consensus 507 ----------------------~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 507 ----------------------RGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKF 559 (844)
T ss_dssp ----------------------SEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECC
T ss_pred ----------------------heeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCc
Confidence 556666666664444 332 566666666666666666543 3455666666666
Q ss_pred cc
Q 045139 817 MR 818 (820)
Q Consensus 817 ~g 818 (820)
.|
T Consensus 560 ~C 561 (844)
T 3j0a_A 560 IC 561 (844)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-47 Score=462.22 Aligned_cols=522 Identities=22% Similarity=0.245 Sum_probs=321.6
Q ss_pred cccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCccc-CccccCCCCCCEEeccCCCCCC
Q 045139 76 CKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQI-PAFIGSLKNIRHLDLSNAGFTG 154 (820)
Q Consensus 76 c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~-p~~i~~l~~L~~L~Ls~n~l~~ 154 (820)
|.|.+|.+ ...+++.|+|++ +.+++..|.+|.++++|++|||++|...+. + |..|+++++|++|+|++|.+++
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~---N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSF---NYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEES---CCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCCCCCC--CCCCcCEEECCC---CcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCcc
Confidence 56777776 467899999998 889988899999999999999999977665 5 7889999999999999999998
Q ss_pred CCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccc
Q 045139 155 RVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASS 234 (820)
Q Consensus 155 ~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 234 (820)
..|..|+++++|++|+|++| ......+.. ..++++++|++|++++|.+++..+.
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~------------------------~~~~~L~~L~~L~Ls~N~l~~~~~~- 141 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFC-GLSDAVLKD------------------------GYFRNLKALTRLDLSKNQIRSLYLH- 141 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTC-CCSSCCSTT------------------------CCCSSCSSCCEEEEESCCCCCCCCC-
T ss_pred cCHhHccCCcccCEeeCcCC-CCCcccccC------------------------ccccccCCCCEEECCCCcccccccc-
Confidence 88999999999999999998 221111111 1144455555555555555444331
Q ss_pred cccccCCcCCccEEECcCCCCCCchhhhhhccC-CCCcEEEccCCcccCCCCCCCCCCCCC------CCEEECCCCCCC-
Q 045139 235 SVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSS-SSLVYLDLSSNKLQGPIPDSAFPNPTS------LSYLDLSNNQLV- 306 (820)
Q Consensus 235 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~~L~~L~Ls~n~l~g~ip~~~l~~l~~------L~~L~Ls~n~l~- 306 (820)
..++++ ++|++|++++|.+++..+..+.... ++|++|++++|.+.+.+|.. ++.+++ |++|++++|.++
T Consensus 142 -~~~~~L-~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~ 218 (844)
T 3j0a_A 142 -PSFGKL-NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTV 218 (844)
T ss_dssp -GGGGTC-SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred -hhHhhC-CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc-hhhcCCccccCceeEEecCCCcCch
Confidence 234444 5555555555555555555444431 26666677666666655554 444433 666666666555
Q ss_pred Ccchhhhcc---CCCcEEEcCC---------CCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCC-CcCcCCCcEE
Q 045139 307 SVPKSFRNL---CRLRALYQDS---------NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKEL 373 (820)
Q Consensus 307 ~ip~~l~~l---~~L~~L~L~~---------n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L 373 (820)
.+|..+... ..++.+.++. +.+.+..+..|..+. ..+|+.|++++|.+.+..|. +..+++|+.|
T Consensus 219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 295 (844)
T 3j0a_A 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA---RSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295 (844)
T ss_dssp TTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT---TSCCCEEECTTCCCCEECSCCSSSCCCCCEE
T ss_pred hHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccc---cCCccEEECCCCcccccChhhhhcCCCCCEE
Confidence 334333322 3455555542 222233333333321 11455555555555544444 4444444433
Q ss_pred ecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCcccc
Q 045139 374 HLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFEL 453 (820)
Q Consensus 374 ~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L 453 (820)
+ +++|.+++..|..|..+++|++|++++|.+++..+. .+..+++|++|++++|.+..
T Consensus 296 ~----------L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~------------ 352 (844)
T 3j0a_A 296 N----------LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS-NFYGLPKVAYIDLQKNHIAI------------ 352 (844)
T ss_dssp E----------EESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC-SCSSCTTCCEEECCSCCCCC------------
T ss_pred E----------CCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH-HhcCCCCCCEEECCCCCCCc------------
Confidence 2 233333334444455555555555555555443333 34455555555555554433
Q ss_pred ceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceecc
Q 045139 454 NIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLS 533 (820)
Q Consensus 454 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls 533 (820)
..+..+..+++|+.|++++|.+++... .++|+.|++++|+++.. |.. ...+ +.++++
T Consensus 353 ------------~~~~~~~~l~~L~~L~Ls~N~l~~i~~------~~~L~~L~l~~N~l~~l-~~~---~~~l-~~L~ls 409 (844)
T 3j0a_A 353 ------------IQDQTFKFLEKLQTLDLRDNALTTIHF------IPSIPDIFLSGNKLVTL-PKI---NLTA-NLIHLS 409 (844)
T ss_dssp ------------CCSSCSCSCCCCCEEEEETCCSCCCSS------CCSCSEEEEESCCCCCC-CCC---CTTC-CEEECC
T ss_pred ------------cChhhhcCCCCCCEEECCCCCCCcccC------CCCcchhccCCCCcccc-ccc---cccc-ceeecc
Confidence 333344455555555555555543211 24555555555555522 221 1112 444444
Q ss_pred CCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCc-ccccCCCCcEEEcCCCeee----
Q 045139 534 ANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPN-CSKNWQKLTVLNLANNKFS---- 608 (820)
Q Consensus 534 ~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~---- 608 (820)
+|++++. -.........+|++|++++|++++..+. .+..+++|++|++++|.++
T Consensus 410 ~N~l~~l---------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 410 ENRLENL---------------------DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp SCCCCSS---------------------TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred cCccccC---------------------chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence 4444431 1000000111788888988888865443 4556788999999999886
Q ss_pred -ecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcc
Q 045139 609 -GKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQ 687 (820)
Q Consensus 609 -~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~ 687 (820)
+..+..|..+++|++|+|++|++++..|..+.++++|++|+|++|++++..|..+ .++|+.|++++|++++..|..
T Consensus 469 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~---~~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL---PANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC---CSCCCEEEEEEECCCCCCSCC
T ss_pred cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh---hccccEEECCCCcCCCCChhH
Confidence 4445678888999999999999998888888899999999999999986554443 278999999999999888876
Q ss_pred cCCCCCCCEEeCcCCCCcccc
Q 045139 688 VCHLQRIQVLDLSQNNISGTV 708 (820)
Q Consensus 688 l~~l~~L~~L~Ls~N~l~~~~ 708 (820)
+ .+|+.|++++|++....
T Consensus 546 ~---~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 546 F---VSLSVLDITHNKFICEC 563 (844)
T ss_dssp C---SSCCEEEEEEECCCCSS
T ss_pred h---CCcCEEEecCCCccccc
Confidence 5 47888999999887643
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-47 Score=441.88 Aligned_cols=415 Identities=21% Similarity=0.231 Sum_probs=238.0
Q ss_pred CCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCC--cchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCC
Q 045139 269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS--VPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDT 346 (820)
Q Consensus 269 ~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~--ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~ 346 (820)
+|++|++++|.++ .++...++++++|++|++++|.++. +|..|+++++|++|++++|++++..+..+..+. +
T Consensus 101 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~ 174 (570)
T 2z63_A 101 SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-----Q 174 (570)
T ss_dssp TCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH-----T
T ss_pred ccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh-----c
Confidence 6777777777776 4554447788888888888888874 677888888888888888888887777777777 6
Q ss_pred c----cEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCccc-ccccccccCCCCCCEEecCCCcCccc----
Q 045139 347 L----EILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFT-GTLTKSIGQLSQLELLDVASNSLKGM---- 417 (820)
Q Consensus 347 L----~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~---- 417 (820)
| +.+++++|.+.+..|......+|+.|++++ |... ..++..+..++.++...+....+...
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~----------n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN----------NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES----------CCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred cchhhhhcccCCCCceecCHHHhccCcceeEeccc----------ccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 6 778888888776666522222555554433 2111 12344555555555554432222110
Q ss_pred -cCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccc-cCCCCCchhhhcCCCccEEecCCCCccCCCCchh
Q 045139 418 -ITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGAC-KQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWF 495 (820)
Q Consensus 418 -~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~ 495 (820)
++...+..+++ ..++.+.+..+ .+.+..|.++..+++|+.|++++|.+. .+|.++
T Consensus 245 ~~~~~~~~~l~~----------------------l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~ 301 (570)
T 2z63_A 245 KFDKSALEGLCN----------------------LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFS 301 (570)
T ss_dssp ECCTTTTGGGGG----------------------SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCC
T ss_pred hcchhhhccccc----------------------cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhh
Confidence 01101111111 12333444443 334455666666666666666666665 355555
Q ss_pred hccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccE
Q 045139 496 WDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRY 575 (820)
Q Consensus 496 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~ 575 (820)
... +|+.|++++|.+. .+|. ..++ +|+.
T Consensus 302 ~~~--~L~~L~l~~n~~~-~l~~--~~l~-----------------------------------------------~L~~ 329 (570)
T 2z63_A 302 YNF--GWQHLELVNCKFG-QFPT--LKLK-----------------------------------------------SLKR 329 (570)
T ss_dssp SCC--CCSEEEEESCBCS-SCCB--CBCS-----------------------------------------------SCCE
T ss_pred ccC--CccEEeeccCccc-ccCc--cccc-----------------------------------------------ccCE
Confidence 443 5666666666655 2222 1122 4555
Q ss_pred EEccCCccccccCcccccCCCCcEEEcCCCeeeecC--CCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCC
Q 045139 576 LDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKI--PDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHN 653 (820)
Q Consensus 576 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 653 (820)
|++++|.+.+..+. ..+++|++|++++|++++.. |..+..+++|++|++++|.+.+..+. +..+++|++|++++|
T Consensus 330 L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n 406 (570)
T 2z63_A 330 LTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS 406 (570)
T ss_dssp EEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTS
T ss_pred EeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCC
Confidence 55555555444333 44555666666666555432 44555556666666666665543333 555666666666666
Q ss_pred cCccccCc-chhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCc-cccchhccccccccccccCCcccccC
Q 045139 654 KISGIIPA-WIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS-GTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 654 ~l~~~~p~-~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
++.+..|. .+. .+++|++|++++|++.+..|..+..+++|++|++++|+++ +.+|..+.+++.|
T Consensus 407 ~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L------------- 472 (570)
T 2z63_A 407 NLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL------------- 472 (570)
T ss_dssp EEESCTTSCTTT-TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------------
T ss_pred ccccccchhhhh-cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC-------------
Confidence 66554442 233 5566666666666666555666666666666666666665 3455555555554
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD 810 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld 810 (820)
+.||+++|++++.+| .++.+++|++|++++|++++..|..|.++++|++||
T Consensus 473 ----------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 473 ----------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp ----------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ----------------------------CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence 566666666665555 566666666666666666665555566666666666
Q ss_pred CCCCcCccc
Q 045139 811 LSKNMLMRA 819 (820)
Q Consensus 811 Ls~N~l~g~ 819 (820)
+++|+++|.
T Consensus 525 l~~N~~~~~ 533 (570)
T 2z63_A 525 LHTNPWDCS 533 (570)
T ss_dssp CCSSCBCCC
T ss_pred ecCCcccCC
Confidence 666666654
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8e-46 Score=429.46 Aligned_cols=495 Identities=22% Similarity=0.237 Sum_probs=295.1
Q ss_pred CCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCee
Q 045139 115 QHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYV 194 (820)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 194 (820)
+++++||+++|.+++. .+..|+++++|++|+|++|.+++..|..|+++++|++|++++| ......+..++++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccc
Confidence 4688888888888774 5667888888888888888888776777888888888888888 3333444567778888888
Q ss_pred eCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCC-CccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCC---
Q 045139 195 RLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSV-IASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL--- 270 (820)
Q Consensus 195 ~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L--- 270 (820)
++++|.+...+.. .++++++|++|++++|.+++. +| ..+.++ ++|++|++++|.+++..+..+.... +|
T Consensus 106 ~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~~lp---~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~~ 178 (570)
T 2z63_A 106 VAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLP---EYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLH-QMPLL 178 (570)
T ss_dssp ECTTSCCCCSTTC--SCTTCTTCCEEECCSSCCCCCCCC---GGGGGC-TTCCEEECTTSCCCEECGGGGHHHH-TCTTC
T ss_pred cccccccccCCCc--cccccccccEEecCCCccceecCh---hhhccc-CCCCEEeCcCCccceecHHHccchh-ccchh
Confidence 8888887764322 377888888888888888773 46 556666 8888888888888776666666555 66
Q ss_pred -cEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCC--CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCc
Q 045139 271 -VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV--SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTL 347 (820)
Q Consensus 271 -~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~--~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L 347 (820)
++|++++|.+++ ++..++... +|++|++++|... .++..+..++.++...+....+... . .+
T Consensus 179 ~~~L~l~~n~l~~-~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~--------~-----~l 243 (570)
T 2z63_A 179 NLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--------G-----NL 243 (570)
T ss_dssp CCEEECTTCCCCE-ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC--------S-----SC
T ss_pred hhhcccCCCCcee-cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc--------h-----hh
Confidence 788888888884 444436555 7888888877544 4566677777776665543222210 0 11
Q ss_pred cEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCC-cccccccccccCCCCCCEEecCCCcCccccCHHHhhcC
Q 045139 348 EILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNN-RFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNL 426 (820)
Q Consensus 348 ~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 426 (820)
+. +.... +..+++++ ++.++++++ .+.+..|..+..+++|+.|++++|.+++ +|. .+..+
T Consensus 244 ~~--~~~~~-------~~~l~~l~--------l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~-~~~~~ 304 (570)
T 2z63_A 244 EK--FDKSA-------LEGLCNLT--------IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKD-FSYNF 304 (570)
T ss_dssp EE--CCTTT-------TGGGGGSE--------EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCB-CCSCC
T ss_pred hh--cchhh-------hccccccc--------hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhh-hhccC
Confidence 10 00000 22222221 124445555 5566666677777777777777777664 444 34555
Q ss_pred CCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEE
Q 045139 427 SRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLN 506 (820)
Q Consensus 427 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ 506 (820)
+|++|++++|.+. .+|. ..+ ++|+.|+
T Consensus 305 -~L~~L~l~~n~~~-------------------------~l~~--~~l-------------------------~~L~~L~ 331 (570)
T 2z63_A 305 -GWQHLELVNCKFG-------------------------QFPT--LKL-------------------------KSLKRLT 331 (570)
T ss_dssp -CCSEEEEESCBCS-------------------------SCCB--CBC-------------------------SSCCEEE
T ss_pred -CccEEeeccCccc-------------------------ccCc--ccc-------------------------cccCEEe
Confidence 6666666666552 1111 122 3455555
Q ss_pred cCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccc
Q 045139 507 LSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGE 586 (820)
Q Consensus 507 ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 586 (820)
+++|.+.+..+. ..++ +|++|++++|.+++.
T Consensus 332 l~~n~~~~~~~~--~~~~-----------------------------------------------~L~~L~l~~n~l~~~ 362 (570)
T 2z63_A 332 FTSNKGGNAFSE--VDLP-----------------------------------------------SLEFLDLSRNGLSFK 362 (570)
T ss_dssp EESCBSCCBCCC--CBCT-----------------------------------------------TCCEEECCSSCCBEE
T ss_pred CcCCcccccccc--ccCC-----------------------------------------------CCCEEeCcCCccCcc
Confidence 555544332221 0111 444444444444433
Q ss_pred c--CcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCC-cchhcCCCCCEEECCCCcCccccCcch
Q 045139 587 L--PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP-SSVKSFTQLTVLDLGHNKISGIIPAWI 663 (820)
Q Consensus 587 ~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l 663 (820)
. |..+..+++|++|++++|++.+..+. +..+++|++|++++|.+.+..| ..+.++++|++|++++|++.+..|..+
T Consensus 363 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 441 (570)
T 2z63_A 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441 (570)
T ss_dssp EEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh
Confidence 2 34455555555555555555543332 5555555555555555554443 345555555555555555555555555
Q ss_pred hcCCCCccEEEcCccccc-ccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCcee
Q 045139 664 GDSLPDLVVLSLRSNNFH-GRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHAL 742 (820)
Q Consensus 664 ~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 742 (820)
. .+++|++|++++|+++ +.+|..+..+++|++|++++|++++..|..+.+++.|
T Consensus 442 ~-~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------------ 496 (570)
T 2z63_A 442 N-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL------------------------ 496 (570)
T ss_dssp T-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC------------------------
T ss_pred h-cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC------------------------
Confidence 4 4555566666655555 3455555555666666666666555555555555544
Q ss_pred EEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCc
Q 045139 743 LVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIP 797 (820)
Q Consensus 743 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip 797 (820)
+.|++++|++++.+| .+..+++|+.|++++|.+++..|
T Consensus 497 -----------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 497 -----------------QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp -----------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred -----------------CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 555666666655444 45555666666666666555544
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.6e-46 Score=431.36 Aligned_cols=205 Identities=21% Similarity=0.218 Sum_probs=136.5
Q ss_pred CcccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCC
Q 045139 75 CCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTG 154 (820)
Q Consensus 75 ~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~ 154 (820)
.|.|.|| |+.. + +.++ .+|+.+. ++|++|++++|.+++. .|..++++++|++|+|++|.+++
T Consensus 3 ~C~~~~~-c~~~----------~---~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~ 64 (549)
T 2z81_A 3 SCDASGV-CDGR----------S---RSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINT 64 (549)
T ss_dssp EECTTSE-EECT----------T---SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCE
T ss_pred cCCCCce-EECC----------C---Cccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCc
Confidence 4899998 8532 2 3333 4666554 7899999999999875 67889999999999999999998
Q ss_pred CCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCC-Ccc
Q 045139 155 RVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSV-IAS 233 (820)
Q Consensus 155 ~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~ 233 (820)
..|..|+++++|++|++++| .+.+ ..+..++++++|++|++++|.+++. .|
T Consensus 65 ~~~~~~~~l~~L~~L~Ls~n-------------------------~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~- 116 (549)
T 2z81_A 65 IEGDAFYSLGSLEHLDLSDN-------------------------HLSS--LSSSWFGPLSSLKYLNLMGNPYQTLGVT- 116 (549)
T ss_dssp ECTTTTTTCTTCCEEECTTS-------------------------CCCS--CCHHHHTTCTTCCEEECTTCCCSSSCSS-
T ss_pred cChhhccccccCCEEECCCC-------------------------ccCc--cCHHHhccCCCCcEEECCCCcccccchh-
Confidence 77788888999999988888 2332 1234567777777777777777653 23
Q ss_pred ccccccCCcCCccEEECcCCCCCCchhh-hhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhh
Q 045139 234 SSVSFSNSSRSLAHLDLSLNDVSNSVYY-WLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSF 312 (820)
Q Consensus 234 ~~~~l~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l 312 (820)
..+.++ ++|++|++++|.+.+.+|. .+.... +|++|++++|.+++.+|.. ++.+++|++|++++|.+..+|..+
T Consensus 117 --~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~ 191 (549)
T 2z81_A 117 --SLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLT-SLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESAFLLEIF 191 (549)
T ss_dssp --CSCTTC-TTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBSTTHHHHH
T ss_pred --hhhhcc-CCccEEECCCCccccccCHhhhhccc-ccCeeeccCCcccccChhh-hhccccCceEecccCcccccchhh
Confidence 344455 6666666666664444543 333333 6666777766666555555 666666666666666666555543
Q ss_pred -hccCCCcEEEcCCCCCCC
Q 045139 313 -RNLCRLRALYQDSNNLTD 330 (820)
Q Consensus 313 -~~l~~L~~L~L~~n~l~~ 330 (820)
..+++|++|++++|++++
T Consensus 192 ~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 192 ADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp HHSTTTBSEEEEESCBCTT
T ss_pred HhhcccccEEEccCCcccc
Confidence 345555555555555544
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.9e-46 Score=429.00 Aligned_cols=477 Identities=18% Similarity=0.191 Sum_probs=341.4
Q ss_pred CCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcc-hhhhccCCCcEE
Q 045139 243 RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRAL 321 (820)
Q Consensus 243 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L 321 (820)
+...+.+.+++.++ .+|..+. ++|++|++++|.+++..|.. |+++++|++|++++|+++.++ ..|.++++|++|
T Consensus 5 ~~~~~c~~~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 5 DASGVCDGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp CTTSEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCEECSST-TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCceEECCCCccc-cccccCC---CCccEEECcCCccCccChhh-hhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence 33445677778777 5666543 48899999999888544544 888899999999999888665 568888889999
Q ss_pred EcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCccc-CCC-CcCcCCCcEEecCCCcccEEEccCCcccccc-cccc
Q 045139 322 YQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGS-LPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTL-TKSI 398 (820)
Q Consensus 322 ~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~-~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~-~~~l 398 (820)
++++|++++..|..|..++ +|++|++++|.+++. .|. ++.+++|++|+++ +|.+.+.+ +..+
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~----------~n~~~~~~~~~~~ 144 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLS-----SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG----------NVETFSEIRRIDF 144 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCT-----TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE----------ESSSCCEECTTTT
T ss_pred ECCCCccCccCHHHhccCC-----CCcEEECCCCcccccchhhhhhccCCccEEECC----------CCccccccCHhhh
Confidence 9999998888888888887 888888888888753 333 6677777765443 44422233 3466
Q ss_pred cCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchh-hhcCCCc
Q 045139 399 GQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKW-LQTQNKF 477 (820)
Q Consensus 399 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L 477 (820)
.++++|++|++++|.+++.+|. .++.+++|++|++++|.+. .+|.+ +..+++|
T Consensus 145 ~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~-------------------------~~~~~~~~~l~~L 198 (549)
T 2z81_A 145 AGLTSLNELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESA-------------------------FLLEIFADILSSV 198 (549)
T ss_dssp TTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBST-------------------------THHHHHHHSTTTB
T ss_pred hcccccCeeeccCCcccccChh-hhhccccCceEecccCccc-------------------------ccchhhHhhcccc
Confidence 7777777777777777765555 5667777777777776653 22222 2335555
Q ss_pred cEEecCCCCccCCC--CchhhccCCCcEEEEcCCCcCCCCCCcc----cccccCCCCceeccCCcCcCC---------CC
Q 045139 478 SELDVSAAEISDTV--PNWFWDLSPNLYYLNLSHNHFTGMLPDL----SQKFTAYPPEIDLSANSFEGP---------IP 542 (820)
Q Consensus 478 ~~L~l~~n~i~~~~--p~~~~~~~~~L~~L~ls~n~l~~~~p~~----~~~~~~l~~~l~ls~n~~~~~---------~p 542 (820)
++|++++|.+++.. |..+....++|+.|++++|.+++..+.. ......+ +.+++++|.+.+. .+
T Consensus 199 ~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L-~~l~l~~~~~~~~~~~~~~~~~~~ 277 (549)
T 2z81_A 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL-SEVEFDDCTLNGLGDFNPSESDVV 277 (549)
T ss_dssp SEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC-CEEEEESCEEECCSCCCCCTTTCC
T ss_pred cEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc-cccccccccccccccccccchhhh
Confidence 55555555555431 2222223345555555555554432221 1222333 5555555555442 12
Q ss_pred CCCCcceEEeccCcccccccc-----hhhccccccccEEEccCCccccccCccc-ccCCCCcEEEcCCCeeeecCC---C
Q 045139 543 PIPLTVTSLILFKNMFSGSLS-----FLCQISDEHFRYLDLSDNLLSGELPNCS-KNWQKLTVLNLANNKFSGKIP---D 613 (820)
Q Consensus 543 ~~~~~l~~l~l~~n~~~~~~~-----~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p---~ 613 (820)
...++++.+.+.++.+..... ..... ..+++.|++++|+++ .+|..+ ..+++|++|++++|++++.+| .
T Consensus 278 ~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~-~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 355 (549)
T 2z81_A 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSL-LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355 (549)
T ss_dssp CCCTTCCEEEEESCBCSCGGGSCCCCHHHHH-STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred hhhcccccccccccccchhhhcccchhhhhh-cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchh
Confidence 345567777777665543221 10111 127999999999997 677666 579999999999999998764 4
Q ss_pred CcccccCCcEEeccCCcccccCC--cchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCC
Q 045139 614 SMDFNCMMLSLHLRNNSFIGELP--SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHL 691 (820)
Q Consensus 614 ~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l 691 (820)
.++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+. .+++|++|++++|+++ .+|..+ .
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~~~~L~~L~Ls~N~l~-~l~~~~--~ 430 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ-WPEKMRFLNLSSTGIR-VVKTCI--P 430 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC-CCTTCCEEECTTSCCS-CCCTTS--C
T ss_pred hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc-ccccccEEECCCCCcc-cccchh--c
Confidence 57889999999999999986543 56889999999999999998 7888887 7899999999999998 455444 3
Q ss_pred CCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCee
Q 045139 692 QRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYG 771 (820)
Q Consensus 692 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 771 (820)
++|++||+++|++++.+ .+++.| ++|||++|+++
T Consensus 431 ~~L~~L~Ls~N~l~~~~----~~l~~L-----------------------------------------~~L~Ls~N~l~- 464 (549)
T 2z81_A 431 QTLEVLDVSNNNLDSFS----LFLPRL-----------------------------------------QELYISRNKLK- 464 (549)
T ss_dssp TTCSEEECCSSCCSCCC----CCCTTC-----------------------------------------CEEECCSSCCS-
T ss_pred CCceEEECCCCChhhhc----ccCChh-----------------------------------------cEEECCCCccC-
Confidence 68999999999998643 344444 89999999998
Q ss_pred cCCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCccc
Q 045139 772 EIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMRA 819 (820)
Q Consensus 772 ~ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g~ 819 (820)
.||..+.+++|++|+|++|++++.+|..|+.+++|++||+++|+++|.
T Consensus 465 ~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 465 TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 889777899999999999999999999999999999999999999885
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.4e-43 Score=414.39 Aligned_cols=519 Identities=19% Similarity=0.170 Sum_probs=347.3
Q ss_pred CCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCee
Q 045139 115 QHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYV 194 (820)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 194 (820)
+.+++|||++|++++. .|..|+++++|++|+|++|+|++..|.+|+++++|++|+|++|
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-------------------- 110 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-------------------- 110 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC--------------------
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC--------------------
Confidence 3577777777777663 3456777777777777777777555555666666666666555
Q ss_pred eCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEE
Q 045139 195 RLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLD 274 (820)
Q Consensus 195 ~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~ 274 (820)
++++..+ ..+..+ ++|++|+
T Consensus 111 -------------------------------~l~~l~~----------------------------~~f~~L-~~L~~L~ 130 (635)
T 4g8a_A 111 -------------------------------PIQSLAL----------------------------GAFSGL-SSLQKLV 130 (635)
T ss_dssp -------------------------------CCCEECG----------------------------GGGTTC-TTCCEEE
T ss_pred -------------------------------cCCCCCH----------------------------HHhcCC-CCCCEEE
Confidence 2222211 111222 2677777
Q ss_pred ccCCcccCCCCCCCCCCCCCCCEEECCCCCCC--CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEc
Q 045139 275 LSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV--SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQL 352 (820)
Q Consensus 275 Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~--~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L 352 (820)
+++|+++ .+|..+|+++++|++|++++|+++ .+|..++.+++|++|++++|++++..+..|..+.... .....+++
T Consensus 131 Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~-~~~~~~~l 208 (635)
T 4g8a_A 131 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP-LLNLSLDL 208 (635)
T ss_dssp CTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-TCCCEEEC
T ss_pred CCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh-hhhhhhhc
Confidence 7777777 456555888888888888888887 4567788899999999999999988888877665211 13346777
Q ss_pred CCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccc-cccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCE
Q 045139 353 NSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTG-TLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTY 431 (820)
Q Consensus 353 ~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 431 (820)
+.|.+....+.......++.+ ++.+|.... ..+..+..+..++...+..+.....
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l----------~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~-------------- 264 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKL----------TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE-------------- 264 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEE----------EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS--------------
T ss_pred ccCcccccCcccccchhhhhh----------hhhcccccccccchhhcCCcccccccccccccccc--------------
Confidence 777776554443322233333 222332221 1223344444444444332221110
Q ss_pred EeCcCCccccccCCCCcCccccceeecccccCC---CCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcC
Q 045139 432 LDLSHNSLILNFGSGWVPSFELNIIRLGACKQG---PQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLS 508 (820)
Q Consensus 432 L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls 508 (820)
..+.......+.....+....+..+... ...+..+....+++.+++.++.+....+.. ....++.|++.
T Consensus 265 -----~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~L~~L~l~ 336 (635)
T 4g8a_A 265 -----GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELV 336 (635)
T ss_dssp -----CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGG---SCCCCSEEEEE
T ss_pred -----cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccc---cchhhhhhhcc
Confidence 0000001111111122222222221111 122334555666777777777665433221 12467777777
Q ss_pred CCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccc--cc
Q 045139 509 HNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLS--GE 586 (820)
Q Consensus 509 ~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~ 586 (820)
+|.+.+..+.. +..+ +.+++..|......+ .. ...+++.+++++|.+. +.
T Consensus 337 ~~~~~~~~~~~---l~~L-~~l~l~~n~~~~~~~---------------------~~---~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 337 NCKFGQFPTLK---LKSL-KRLTFTSNKGGNAFS---------------------EV---DLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp SCEESSCCCCB---CTTC-CEEEEESCCSCCBCC---------------------CC---BCTTCCEEECCSSCCBEEEE
T ss_pred cccccCcCccc---chhh-hhcccccccCCCCcc---------------------cc---cccccccchhhccccccccc
Confidence 77665544331 2223 455555554433221 10 1117899999999875 34
Q ss_pred cCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCC-cchhcCCCCCEEECCCCcCccccCcchhc
Q 045139 587 LPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP-SSVKSFTQLTVLDLGHNKISGIIPAWIGD 665 (820)
Q Consensus 587 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 665 (820)
.+..+..+.+|++++++.|.+.. .+..+..+++|+.++++.|......+ ..+..+++++.+++++|.+.+..|..+.
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~- 466 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN- 466 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-
T ss_pred cccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc-
Confidence 56777888999999999999885 56678889999999999998876654 5678899999999999999988887776
Q ss_pred CCCCccEEEcCcccc-cccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEE
Q 045139 666 SLPDLVVLSLRSNNF-HGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLV 744 (820)
Q Consensus 666 ~l~~L~~L~L~~N~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (820)
.+++|++|++++|++ .+..|..+..+++|++|||++|++++..|..|.++++|
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L-------------------------- 520 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL-------------------------- 520 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC--------------------------
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC--------------------------
Confidence 799999999999985 45678899999999999999999999899999998888
Q ss_pred eeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCC-CCCCeEeCCCCcCccc
Q 045139 745 WKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGL-TLLNSLDLSKNMLMRA 819 (820)
Q Consensus 745 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~LdLs~N~l~g~ 819 (820)
++|+|++|+|++.+| .+..+++|++|+|++|+|++.+|+.|..+ ++|++|||++|++++.
T Consensus 521 ---------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 521 ---------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp ---------------CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred ---------------CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 899999999998878 89999999999999999999999999988 6899999999999873
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.4e-45 Score=415.16 Aligned_cols=449 Identities=20% Similarity=0.216 Sum_probs=356.3
Q ss_pred cEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcc-hhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccE
Q 045139 271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEI 349 (820)
Q Consensus 271 ~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~ 349 (820)
++|++++|.++ .+|.. +. ++|++|++++|+++.++ ..|.++++|++|++++|++++..|..|..++ +|++
T Consensus 3 ~~l~ls~n~l~-~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~ 73 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ-----ELEY 73 (520)
T ss_dssp CEEECTTSCCS-SCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT-----TCCE
T ss_pred ceEecCCCCcc-ccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhccc-----CCCE
Confidence 58999999999 79987 44 89999999999999776 5799999999999999999999999999998 9999
Q ss_pred EEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccc-cccccccCCCCCCEEecCCCcCccccCHHHhhcCCC
Q 045139 350 LQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTG-TLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSR 428 (820)
Q Consensus 350 L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 428 (820)
|++++|++++ +|.. .+++|++|+ +++|.+++ .+|..++++++|++|++++|.+++. .+..+++
T Consensus 74 L~Ls~N~l~~-lp~~-~l~~L~~L~----------L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~ 137 (520)
T 2z7x_B 74 LDLSHNKLVK-ISCH-PTVNLKHLD----------LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAH 137 (520)
T ss_dssp EECCSSCCCE-EECC-CCCCCSEEE----------CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTT
T ss_pred EecCCCceee-cCcc-ccCCccEEe----------ccCCccccccchhhhccCCcceEEEecCcccchh----hcccccc
Confidence 9999999984 5554 677888665 45666665 4688999999999999999999862 5778888
Q ss_pred C--CEEeCcCCcc--ccccCCCCcCcc-ccceeecccccCCCCCch-hhhcCCCccEEecCCCC-------ccCCCCchh
Q 045139 429 L--TYLDLSHNSL--ILNFGSGWVPSF-ELNIIRLGACKQGPQFPK-WLQTQNKFSELDVSAAE-------ISDTVPNWF 495 (820)
Q Consensus 429 L--~~L~Ls~n~l--~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~n~-------i~~~~p~~~ 495 (820)
| ++|++++|.+ .+..|..+.... ....+++++|.+.+.++. .+..+++|+.+++++|. +.+.+| .+
T Consensus 138 L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l 216 (520)
T 2z7x_B 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KL 216 (520)
T ss_dssp SCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GG
T ss_pred ceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hh
Confidence 8 9999999998 666666665544 334556777776655543 56678888888888886 555555 34
Q ss_pred hccCCCcEEEEcCCCcCCCCCCcccc---cccCCCCceeccCCcCcCCCCCCC-----CcceEEeccCcccccccchhhc
Q 045139 496 WDLSPNLYYLNLSHNHFTGMLPDLSQ---KFTAYPPEIDLSANSFEGPIPPIP-----LTVTSLILFKNMFSGSLSFLCQ 567 (820)
Q Consensus 496 ~~~~~~L~~L~ls~n~l~~~~p~~~~---~~~~l~~~l~ls~n~~~~~~p~~~-----~~l~~l~l~~n~~~~~~~~~~~ 567 (820)
.. .++|+.|++++|.+++..+.... ..+.+ +.+++++|+++|.+|..+ ..++
T Consensus 217 ~~-l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~p~~~~~~~~~~l~------------------ 276 (520)
T 2z7x_B 217 QT-NPKLSNLTLNNIETTWNSFIRILQLVWHTTV-WYFSISNVKLQGQLDFRDFDYSGTSLK------------------ 276 (520)
T ss_dssp GG-CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSC-SEEEEEEEEEESCCCCCCCCCCSCCCC------------------
T ss_pred cc-ccchhhccccccccCHHHHHHHHHHhhhCcc-cEEEeecccccCccccchhhcccccCc------------------
Confidence 44 36788888888877653222111 12244 778888888877777665 3333
Q ss_pred cccccccEEEccCCccccccC-cccccC---CCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCC
Q 045139 568 ISDEHFRYLDLSDNLLSGELP-NCSKNW---QKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFT 643 (820)
Q Consensus 568 ~~~~~L~~L~Ls~n~l~~~~p-~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 643 (820)
.|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+.. .+..+++|++|++++|++++.+|..+..++
T Consensus 277 ----~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 348 (520)
T 2z7x_B 277 ----ALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLT 348 (520)
T ss_dssp ----EEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCS
T ss_pred ----eeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCC
Confidence 788888988888 455 455544 67999999999886432 126788999999999999988899999999
Q ss_pred CCCEEECCCCcCcc--ccCcchhcCCCCccEEEcCcccccccCCcc-cCCCCCCCEEeCcCCCCccccchhccccccccc
Q 045139 644 QLTVLDLGHNKISG--IIPAWIGDSLPDLVVLSLRSNNFHGRVPVQ-VCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTA 720 (820)
Q Consensus 644 ~L~~L~Ls~N~l~~--~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 720 (820)
+|++|++++|++++ .+|..+. .+++|++|++++|++++.+|.. +..+++|+.|++++|++++.+|..+. +.|
T Consensus 349 ~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L-- 423 (520)
T 2z7x_B 349 ELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRI-- 423 (520)
T ss_dssp SCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTC--
T ss_pred CCCEEEccCCccCccccchHHHh-hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccC--
Confidence 99999999999986 5667776 7999999999999999756654 78889999999999999887776654 344
Q ss_pred cccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCccc
Q 045139 721 NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSK 799 (820)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~ 799 (820)
+.||+++|+++ .+| .+..+++|++|++++|+++ .+|..
T Consensus 424 ---------------------------------------~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 462 (520)
T 2z7x_B 424 ---------------------------------------KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG 462 (520)
T ss_dssp ---------------------------------------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTT
T ss_pred ---------------------------------------CEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHH
Confidence 89999999998 888 7889999999999999999 46665
Q ss_pred -ccCCCCCCeEeCCCCcCccc
Q 045139 800 -IGGLTLLNSLDLSKNMLMRA 819 (820)
Q Consensus 800 -l~~l~~L~~LdLs~N~l~g~ 819 (820)
|..+++|++||+++|+++|.
T Consensus 463 ~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TTTTCTTCCEEECCSSCBCCC
T ss_pred HhccCCcccEEECcCCCCccc
Confidence 89999999999999999875
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3e-44 Score=424.79 Aligned_cols=444 Identities=18% Similarity=0.215 Sum_probs=260.7
Q ss_pred CCccEEECcCCCCCCchhhhhhccCCCCcEEEc-cCCcccCCCCCCCC--------------------------------
Q 045139 243 RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDL-SSNKLQGPIPDSAF-------------------------------- 289 (820)
Q Consensus 243 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L-s~n~l~g~ip~~~l-------------------------------- 289 (820)
..++.|+|+++.+.|.+|+.++++. +|++|+| ++|.++|..|....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~-~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLT-ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCT-TCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhccc-cceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 5688899999999999998888887 8999999 88877766442211
Q ss_pred ------------------CCCCCCCEEECCC--CCCCCcchhhhccCCCcEEEcCCCCCCCc-----------------c
Q 045139 290 ------------------PNPTSLSYLDLSN--NQLVSVPKSFRNLCRLRALYQDSNNLTDL-----------------L 332 (820)
Q Consensus 290 ------------------~~l~~L~~L~Ls~--n~l~~ip~~l~~l~~L~~L~L~~n~l~~~-----------------~ 332 (820)
.....++.+.+.. |+++.||..|+++++|++|++++|++++. +
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 1111222233332 55555666677777777777777777662 5
Q ss_pred hhhhh--hcccCCcCCccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCc-ccc-cccccccCCC-----
Q 045139 333 PNLFL--KLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNR-FTG-TLTKSIGQLS----- 402 (820)
Q Consensus 333 ~~~~~--~l~~~~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~-l~~-~~~~~l~~l~----- 402 (820)
|..++ .++ +|+.|+|++|.+.+.+|. ++.+++|+.|+ +++|+ ++| .+|..++.++
T Consensus 482 P~~l~f~~L~-----~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~----------Ls~N~~lsg~~iP~~i~~L~~~~~~ 546 (876)
T 4ecn_A 482 NEELSWSNLK-----DLTDVELYNCPNMTQLPDFLYDLPELQSLN----------IACNRGISAAQLKADWTRLADDEDT 546 (876)
T ss_dssp TSCCCGGGCT-----TCCEEEEESCTTCCSCCGGGGGCSSCCEEE----------CTTCTTSCHHHHHHHHHHHHHCTTT
T ss_pred ChhhhhccCC-----CCCEEECcCCCCCccChHHHhCCCCCCEEE----------CcCCCCcccccchHHHHhhhhcccc
Confidence 55544 555 566666666666666665 56666665443 33444 454 4555444433
Q ss_pred --CCCEEecCCCcCccccCH-HHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCC-cc
Q 045139 403 --QLELLDVASNSLKGMITE-AHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNK-FS 478 (820)
Q Consensus 403 --~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~ 478 (820)
+|+.|++++|.++ .+|. ..++++++|++|++++|.+. .+| .+..+.+|+.|++++|.+. .+|.++..+++ |+
T Consensus 547 l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 547 GPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622 (876)
T ss_dssp TTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC
T ss_pred cCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCC
Confidence 6666666666666 3443 24566666666666666655 344 4444444555555544444 44444444444 44
Q ss_pred EEecCCCCccCCCCchhhccC-CCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcc
Q 045139 479 ELDVSAAEISDTVPNWFWDLS-PNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNM 557 (820)
Q Consensus 479 ~L~l~~n~i~~~~p~~~~~~~-~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~ 557 (820)
.|++++|.++ .+|..+.... ++|+.|++++|++.+.+|. .+..+.
T Consensus 623 ~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~-------------------------l~~~l~-------- 668 (876)
T 4ecn_A 623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN-------------------------ISCSMD-------- 668 (876)
T ss_dssp EEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS-------------------------CSSCTT--------
T ss_pred EEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc-------------------------chhhhc--------
Confidence 4444444444 3343332211 1244444444444443332 111000
Q ss_pred cccccchhhccccccccEEEccCCccccccCccc-ccCCCCcEEEcCCCeeeecCCCCccc--------ccCCcEEeccC
Q 045139 558 FSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCS-KNWQKLTVLNLANNKFSGKIPDSMDF--------NCMMLSLHLRN 628 (820)
Q Consensus 558 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~--------l~~L~~L~Ls~ 628 (820)
.....+|+.|++++|+++ .+|..+ ..+++|+.|+|++|+++ .+|..+.. +++|++|+|++
T Consensus 669 ---------~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 669 ---------DYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp ---------TCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred ---------cccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCC
Confidence 000016788888888887 455544 47788888888888887 55554332 22677777777
Q ss_pred CcccccCCcchh--cCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCcc
Q 045139 629 NSFIGELPSSVK--SFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG 706 (820)
Q Consensus 629 N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 706 (820)
|+++ .+|..+. .+++|+.|+|++|++++ +|..++ .+++|+.|+|++|+ ++++|++.+
T Consensus 738 N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~-~L~~L~~L~Ls~N~------------------~ls~N~l~~ 796 (876)
T 4ecn_A 738 NKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL-NSSQLKAFGIRHQR------------------DAEGNRILR 796 (876)
T ss_dssp SCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG-GCTTCCEEECCCCB------------------CTTCCBCCC
T ss_pred CCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhh-cCCCCCEEECCCCC------------------Ccccccccc
Confidence 7776 5666665 67777777777777775 666666 57777777776644 344566666
Q ss_pred ccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEE
Q 045139 707 TVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISL 785 (820)
Q Consensus 707 ~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L 785 (820)
.+|..+.+++.| +.|+|++|++ +.|| .+. ++|+.|
T Consensus 797 ~ip~~l~~L~~L-----------------------------------------~~L~Ls~N~L-~~Ip~~l~--~~L~~L 832 (876)
T 4ecn_A 797 QWPTGITTCPSL-----------------------------------------IQLQIGSNDI-RKVDEKLT--PQLYIL 832 (876)
T ss_dssp CCCTTGGGCSSC-----------------------------------------CEEECCSSCC-CBCCSCCC--SSSCEE
T ss_pred cChHHHhcCCCC-----------------------------------------CEEECCCCCC-CccCHhhc--CCCCEE
Confidence 677666666665 6677777777 4666 544 467777
Q ss_pred eCCCCccccCCcccccCCCCCCeEeCCCCcC
Q 045139 786 NLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816 (820)
Q Consensus 786 ~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l 816 (820)
||++|++....+..+.....+..+.|++|++
T Consensus 833 dLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 833 DIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp ECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred ECCCCCCCccChHHccccccchheeecCCCc
Confidence 7777776655555555444555566666554
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-44 Score=411.09 Aligned_cols=459 Identities=20% Similarity=0.225 Sum_probs=333.6
Q ss_pred CeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCc
Q 045139 192 EYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLV 271 (820)
Q Consensus 192 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~ 271 (820)
+++++++|.++.. |..+. ++|++|++++|.+++..| ..+.++ ++|++|++++|.+++..|..+..+. +|+
T Consensus 3 ~~l~ls~n~l~~i---p~~~~--~~L~~L~Ls~n~i~~~~~---~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLIHV---PKDLS--QKTTILNISQNYISELWT---SDILSL-SKLRILIISHNRIQYLDISVFKFNQ-ELE 72 (520)
T ss_dssp CEEECTTSCCSSC---CCSCC--TTCSEEECCSSCCCCCCH---HHHTTC-TTCCEEECCSSCCCEEEGGGGTTCT-TCC
T ss_pred ceEecCCCCcccc---ccccc--ccccEEECCCCcccccCh---hhcccc-ccccEEecCCCccCCcChHHhhccc-CCC
Confidence 5788888888763 33343 788888888888888776 556666 8888888888888877777776666 888
Q ss_pred EEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCC--cchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCc--
Q 045139 272 YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS--VPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTL-- 347 (820)
Q Consensus 272 ~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~--ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L-- 347 (820)
+|++++|+++ .+|.. .+++|++|++++|+++. +|..|+++++|++|++++|++++ ..+..++ +|
T Consensus 73 ~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~-----~L~L 140 (520)
T 2z7x_B 73 YLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIA-----HLNI 140 (520)
T ss_dssp EEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGT-----TSCE
T ss_pred EEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccc-----ccee
Confidence 8888888888 67764 78888888888888884 56788888888888888888876 3455555 56
Q ss_pred cEEEcCCCCC--cccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccc-cccCCCCCCEEecCCCc-------Ccc
Q 045139 348 EILQLNSNML--RGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTK-SIGQLSQLELLDVASNS-------LKG 416 (820)
Q Consensus 348 ~~L~L~~n~l--~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~-------l~~ 416 (820)
+.|++++|.+ .+..|. +..+.. +.+ .+++++|.+.+.++. .+..+++|+.+++++|. +.+
T Consensus 141 ~~L~l~~n~l~~~~~~~~~l~~l~~-~~l--------~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 141 SKVLLVLGETYGEKEDPEGLQDFNT-ESL--------HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp EEEEEEECTTTTSSCCTTTTTTCCE-EEE--------EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred eEEEeeccccccccccccccccccc-ceE--------EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence 8888888888 666555 444432 233 346666766655443 56677888888888876 555
Q ss_pred ccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhh
Q 045139 417 MITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFW 496 (820)
Q Consensus 417 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~ 496 (820)
.++ .++.+++|+.|++++|.+.+..... ++.+. ..++|++|++++|.+++.+|.+++
T Consensus 212 ~~~--~l~~l~~L~~L~l~~~~l~~~~~~~--------------------~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~ 268 (520)
T 2z7x_B 212 ILA--KLQTNPKLSNLTLNNIETTWNSFIR--------------------ILQLV-WHTTVWYFSISNVKLQGQLDFRDF 268 (520)
T ss_dssp HHH--GGGGCTTCCEEEEEEEEEEHHHHHH--------------------HHHHH-HTSSCSEEEEEEEEEESCCCCCCC
T ss_pred chh--hhccccchhhccccccccCHHHHHH--------------------HHHHh-hhCcccEEEeecccccCccccchh
Confidence 444 4777778888888777664321111 01111 134666677777666666666552
Q ss_pred ----ccCCCcEEEEcCCCcCCCCCC-cccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccc
Q 045139 497 ----DLSPNLYYLNLSHNHFTGMLP-DLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDE 571 (820)
Q Consensus 497 ----~~~~~L~~L~ls~n~l~~~~p-~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~ 571 (820)
..+++|+.+++++|.+ .+| ..+... . ...
T Consensus 269 ~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~------------------------------------------~--~~~ 302 (520)
T 2z7x_B 269 DYSGTSLKALSIHQVVSDVF--GFPQSYIYEI------------------------------------------F--SNM 302 (520)
T ss_dssp CCCSCCCCEEEEEEEEECCC--CSCTHHHHHH------------------------------------------H--HTC
T ss_pred hcccccCceeEeccccccce--ecchhhhhcc------------------------------------------c--ccC
Confidence 2235666666666655 233 111100 0 001
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccc--cCCcchhcCCCCCEEE
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG--ELPSSVKSFTQLTVLD 649 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ 649 (820)
+++.|++++|.+.+.. ....+++|++|++++|++++.+|..++.+++|++|++++|++++ .+|..+..+++|++|+
T Consensus 303 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~ 380 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380 (520)
T ss_dssp CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEE
T ss_pred ceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEE
Confidence 5788888888776432 12678889999999999988888888999999999999999986 5667888999999999
Q ss_pred CCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccc
Q 045139 650 LGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIR 729 (820)
Q Consensus 650 Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~ 729 (820)
+++|++++.+|......+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+.+++.|
T Consensus 381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L----------- 446 (520)
T 2z7x_B 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEAL----------- 446 (520)
T ss_dssp CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTC-----------
T ss_pred CCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCC-----------
Confidence 9999998768866434788999999999999888887764 78999999999998 788877777777
Q ss_pred cCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-C-cccccCCCEEeCCCCccccCCc
Q 045139 730 YPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-E-VTSLVGLISLNLSKNSLTGPIP 797 (820)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~-l~~l~~L~~L~Ls~N~l~~~ip 797 (820)
+.||+++|+++ .+| . +..+++|++|++++|.+++..+
T Consensus 447 ------------------------------~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 447 ------------------------------QELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp ------------------------------CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ------------------------------CEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 88999999998 667 4 8889999999999999987544
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.8e-45 Score=425.47 Aligned_cols=465 Identities=18% Similarity=0.174 Sum_probs=345.3
Q ss_pred CccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEc
Q 045139 244 SLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQ 323 (820)
Q Consensus 244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L 323 (820)
.++.|+|+++.+.|.+|+.++++. +|++|+|++|.+.. .+.. ++... . -..+|... +..|+ +++
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~-~L~~L~Ls~N~~~~-~~~~-~~~~~-~---------~~~~~~~~--~~~l~-l~l 145 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLT-ELEVLALGSHGEKV-NERL-FGPKG-I---------SANMSDEQ--KQKMR-MHY 145 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCT-TCCEEESCCGGGGG-TCCS-BSTTS-B---------CTTCCHHH--HHHHH-THH
T ss_pred CEEEEEecCcccCCcCChHHhcCc-cceEEECcCCcccc-CCcc-ccccc-c---------ccCchHHH--HHHHH-hhH
Confidence 455555555555555555555544 55555555554420 0000 11000 0 01344443 44556 777
Q ss_pred CCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCC
Q 045139 324 DSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQ 403 (820)
Q Consensus 324 ~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~ 403 (820)
+.|.+.+.+|..+..+.. .+..+++....+.. .....++.+.+ ....|+++| +|..++++++
T Consensus 146 ~~~~l~~~~~~~~~~~~~----~l~~~~l~~~~~~~-----~~~~~l~~l~l--------~~~~n~l~~-ip~~l~~l~~ 207 (636)
T 4eco_A 146 QKTFVDYDPREDFSDLIK----DCINSDPQQKSIKK-----SSRITLKDTQI--------GQLSNNITF-VSKAVMRLTK 207 (636)
T ss_dssp HHHHTCCCGGGGSCHHHH----HHHHHCTTSCCCCC-----CCCCCCCTTTT--------TCCSCEEEE-ECGGGGGCTT
T ss_pred HHhhhccCchhhHHHHHH----HHhhcCcccccccc-----ccccchhhhhh--------ccccCCCcc-CCHHHhcccC
Confidence 777777777766553221 23333333322221 11112222211 223577887 8888888888
Q ss_pred CCEEecCCCcCccc-----------------cCHHHhh--cCCCCCEEeCcCCccccccCCCCcCccccceeeccccc-C
Q 045139 404 LELLDVASNSLKGM-----------------ITEAHLS--NLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACK-Q 463 (820)
Q Consensus 404 L~~L~L~~n~l~~~-----------------~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~-~ 463 (820)
|++|++++|.+++. +|. .++ ++++|++|++++|.+.+.+|..+..+.+|+.|++++|. +
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 99999988888884 665 566 88888888888888888888778778888888888887 7
Q ss_pred CC-CCchhhhcC------CCccEEecCCCCccCCCCc--hhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccC
Q 045139 464 GP-QFPKWLQTQ------NKFSELDVSAAEISDTVPN--WFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSA 534 (820)
Q Consensus 464 ~~-~~~~~l~~~------~~L~~L~l~~n~i~~~~p~--~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~ 534 (820)
.+ .+|..+..+ ++|++|++++|+++ .+|. .+..+ ++|++|++++|+++|.+| .+..++.+ +.|++++
T Consensus 287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l-~~L~~L~L~~N~l~g~ip-~~~~l~~L-~~L~L~~ 362 (636)
T 4eco_A 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM-KKLGMLECLYNQLEGKLP-AFGSEIKL-ASLNLAY 362 (636)
T ss_dssp CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC-TTCCEEECCSCCCEEECC-CCEEEEEE-SEEECCS
T ss_pred ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC-CCCCEEeCcCCcCccchh-hhCCCCCC-CEEECCC
Confidence 76 778777765 88888888888888 7777 66554 688888888888888888 56666777 8888888
Q ss_pred CcCcCCCCCCCCcceEEeccCcccccccchhhcccccc-ccEEEccCCccccccCcccccCC--CCcEEEcCCCeeeecC
Q 045139 535 NSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEH-FRYLDLSDNLLSGELPNCSKNWQ--KLTVLNLANNKFSGKI 611 (820)
Q Consensus 535 n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~ 611 (820)
|+++ .+|..+..+. + |++|++++|.++ .+|..+..++ +|++|++++|++++.+
T Consensus 363 N~l~-~lp~~l~~l~----------------------~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 363 NQIT-EIPANFCGFT----------------------EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp SEEE-ECCTTSEEEC----------------------TTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred Cccc-cccHhhhhhc----------------------ccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcc
Confidence 8877 6665544443 6 999999999999 7888887765 8999999999999999
Q ss_pred CCCcc-------cccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCC-------CccEEEcCc
Q 045139 612 PDSMD-------FNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLP-------DLVVLSLRS 677 (820)
Q Consensus 612 p~~l~-------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~-------~L~~L~L~~ 677 (820)
|..+. .+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..++.... +|++|+|++
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred hhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcC
Confidence 99988 8889999999999999544445667999999999999999 78876553333 899999999
Q ss_pred ccccccCCcccC--CCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccc
Q 045139 678 NNFHGRVPVQVC--HLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNT 755 (820)
Q Consensus 678 N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (820)
|+++ .+|..+. .+++|+.|++++|++++ +|..+.+++.|
T Consensus 498 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L------------------------------------- 538 (636)
T 4eco_A 498 NKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL------------------------------------- 538 (636)
T ss_dssp SCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC-------------------------------------
T ss_pred CcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC-------------------------------------
Confidence 9999 7888887 99999999999999997 89999888887
Q ss_pred cCceEEEEC------CCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCcc
Q 045139 756 LGLVKSIDL------SSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMR 818 (820)
Q Consensus 756 l~~L~~LdL------s~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g 818 (820)
+.|+| ++|++.+.+| .++.+++|++|+|++|++ +.+|..+. ++|++||+++|++..
T Consensus 539 ----~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 539 ----KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp ----CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred ----CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 78888 6788999999 999999999999999999 68998876 899999999998763
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.4e-42 Score=398.48 Aligned_cols=459 Identities=22% Similarity=0.269 Sum_probs=257.4
Q ss_pred CEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCE
Q 045139 218 TELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSY 297 (820)
Q Consensus 218 ~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~ 297 (820)
+++++++|.+++.+. .+ .++|++|++++|.+++..+..+.... +|++|++++|.+++..|.. |+++++|++
T Consensus 34 ~~l~ls~~~L~~ip~----~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~ 104 (562)
T 3a79_B 34 SMVDYSNRNLTHVPK----DL---PPRTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIRSLDFHV-FLFNQDLEY 104 (562)
T ss_dssp CEEECTTSCCCSCCT----TS---CTTCCEEECCSSCCCCCCGGGTTTCT-TCCEEECCSCCCCEECTTT-TTTCTTCCE
T ss_pred cEEEcCCCCCccCCC----CC---CCCcCEEECCCCCccccChhhhccCC-CccEEECCCCCCCcCCHHH-hCCCCCCCE
Confidence 555555555554222 11 14555666666665544444444444 5666666666665322332 566666666
Q ss_pred EECCCCCCCCcchhhhccCCCcEEEcCCCCCCCc-chhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCC--cEEe
Q 045139 298 LDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDL-LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSL--KELH 374 (820)
Q Consensus 298 L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L--~~L~ 374 (820)
|++++|+++.+|.. .+++|++|++++|++++. .|..|.+++ +|++|++++|.+.+. .+..+++| ++
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~-----~L~~L~L~~n~l~~~--~~~~l~~L~L~~-- 173 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT-----KLTFLGLSAAKFRQL--DLLPVAHLHLSC-- 173 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT-----TCCEEEEECSBCCTT--TTGGGTTSCEEE--
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccC-----cccEEecCCCccccC--chhhhhhceeeE--
Confidence 66666666655554 556666666666666553 345555555 566666666665531 23333333 33
Q ss_pred cCCCcccEEEccCCcc--cccccccccCCC--CCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCc
Q 045139 375 LYDNMLDVLYLNNNRF--TGTLTKSIGQLS--QLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPS 450 (820)
Q Consensus 375 l~~n~L~~L~L~~n~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 450 (820)
|++++|.+ ++..|..+..+. .+ .+++++|.+.+.++...+..+++|+.+++++|.....
T Consensus 174 --------L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------- 236 (562)
T 3a79_B 174 --------ILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-------- 236 (562)
T ss_dssp --------EEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH--------
T ss_pred --------EEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccc--------
Confidence 33444444 444555554433 22 3455566655555544455555666666665532100
Q ss_pred cccceeecccccCCCCCchhhhcCCCccEEecCCCCccCC----CCchhhccCCCcEEEEcCCCcCCCCCCcccccccCC
Q 045139 451 FELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDT----VPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAY 526 (820)
Q Consensus 451 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~----~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l 526 (820)
.....+..+..+++++.+++.++.+.+. ++..++ .++|++|++++|.++|.+|..+....
T Consensus 237 ------------~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~-- 300 (562)
T 3a79_B 237 ------------RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW--PRPVEYLNIYNLTITERIDREEFTYS-- 300 (562)
T ss_dssp ------------HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCC--
T ss_pred ------------hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh--cccccEEEEeccEeeccccchhhhcc--
Confidence 0001122344455555555554444322 111221 13677777777777766665321100
Q ss_pred CCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccC-ccccc---CCCCcEEEc
Q 045139 527 PPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELP-NCSKN---WQKLTVLNL 602 (820)
Q Consensus 527 ~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~---l~~L~~L~L 602 (820)
...++ .|+.++++.+.+ .+| ..+.. ..+|++|++
T Consensus 301 ------------------~~~L~----------------------~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 301 ------------------ETALK----------------------SLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp ------------------SCSCC----------------------EEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred ------------------cccch----------------------heehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence 01111 334444444444 233 11211 245667777
Q ss_pred CCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCcc--ccCcchhcCCCCccEEEcCcccc
Q 045139 603 ANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISG--IIPAWIGDSLPDLVVLSLRSNNF 680 (820)
Q Consensus 603 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~~l~~L~~L~L~~N~l 680 (820)
++|.+.... ..+.+++|++|++++|++++.+|..+.++++|++|++++|++++ .+|..+. .+++|++|++++|++
T Consensus 339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLNSL 415 (562)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTSCC
T ss_pred cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCCcC
Confidence 777664221 12456677777777777777777777777777777777777774 2334455 577777777777777
Q ss_pred cccCCc-ccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCce
Q 045139 681 HGRVPV-QVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLV 759 (820)
Q Consensus 681 ~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 759 (820)
++.+|. .+..+++|+.|++++|++++.+|..+. +.|
T Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L----------------------------------------- 452 (562)
T 3a79_B 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKV----------------------------------------- 452 (562)
T ss_dssp BSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTC-----------------------------------------
T ss_pred CCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcC-----------------------------------------
Confidence 764444 466777788888888877766665443 333
Q ss_pred EEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCccc-ccCCCCCCeEeCCCCcCccc
Q 045139 760 KSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSK-IGGLTLLNSLDLSKNMLMRA 819 (820)
Q Consensus 760 ~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~LdLs~N~l~g~ 819 (820)
+.|||++|+++ .+| .+..+++|++|+|++|+++ .+|.. |..+++|++||+++|+++|.
T Consensus 453 ~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 453 KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 67888888887 676 6777888888888888887 45554 77788888888888888764
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-40 Score=391.03 Aligned_cols=558 Identities=21% Similarity=0.178 Sum_probs=322.1
Q ss_pred CcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCc
Q 045139 88 GHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQ 167 (820)
Q Consensus 88 ~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 167 (820)
..++.|||++ +.+++..+.+|.++++|++|||++|.+++. .|..|+++++|++|+|++|++++..+..|+++++|+
T Consensus 52 ~~~~~LdLs~---N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSF---NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTT---SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred cCCCEEEeeC---CCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 4689999999 899877778999999999999999999874 566799999999999999999966667789999999
Q ss_pred EEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCC-CccccccccCCcCCcc
Q 045139 168 YLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSV-IASSSVSFSNSSRSLA 246 (820)
Q Consensus 168 ~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~~~~~L~ 246 (820)
+|++++| .+....... ++++++|++|++++|.+++. .| ..+..+ ++|+
T Consensus 128 ~L~Ls~N-~l~~l~~~~--------------------------~~~L~~L~~L~Ls~N~l~~~~~~---~~~~~l-~~L~ 176 (635)
T 4g8a_A 128 KLVAVET-NLASLENFP--------------------------IGHLKTLKELNVAHNLIQSFKLP---EYFSNL-TNLE 176 (635)
T ss_dssp EEECTTS-CCCCSTTCC--------------------------CTTCTTCCEEECCSSCCCCCCCC---GGGGGC-TTCC
T ss_pred EEECCCC-cCCCCChhh--------------------------hhcCcccCeeccccCccccCCCc---hhhccc-hhhh
Confidence 9999988 222111122 44455555555555555442 22 233344 5566
Q ss_pred EEECcCCCCCCchhhhhhcc---CCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCC-C-cchhhhccCCCcEE
Q 045139 247 HLDLSLNDVSNSVYYWLFNS---SSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-S-VPKSFRNLCRLRAL 321 (820)
Q Consensus 247 ~L~Ls~n~l~~~~~~~~~~~---~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~-~-ip~~l~~l~~L~~L 321 (820)
+|++++|.+++..+..+..+ ......++++.|.++ .++.. ......++.+++.+|... . .+..+..+..++..
T Consensus 177 ~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~ 254 (635)
T 4g8a_A 177 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 254 (635)
T ss_dssp EEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred hhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccc
Confidence 66666666555444443322 223456778888877 55555 334445677777777655 2 34456777777766
Q ss_pred EcCCCCCC------CcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCccccccc
Q 045139 322 YQDSNNLT------DLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLT 395 (820)
Q Consensus 322 ~L~~n~l~------~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~ 395 (820)
.+..+... ......+.... .+...++..+.... .....+
T Consensus 255 ~l~~~~~~~~~~l~~~~~~~~~~~~-----~l~~~~l~~~~~~~------------------------------~~~~~~ 299 (635)
T 4g8a_A 255 RLVLGEFRNEGNLEKFDKSALEGLC-----NLTIEEFRLAYLDY------------------------------YLDGII 299 (635)
T ss_dssp EEEEECCTTSCCCSCCCTTTTGGGG-----GSEEEEEEEECCCS------------------------------CEEECT
T ss_pred ccccccccccccccccccccccccc-----chhhhhhhhhhhcc------------------------------cccchh
Confidence 65433222 22222222222 22222222221110 111222
Q ss_pred ccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCC
Q 045139 396 KSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQN 475 (820)
Q Consensus 396 ~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 475 (820)
..+..+.+++.+++.++.+... + .+....+++.|++.+|.+...... ....++.+.+..+.... +.....++
T Consensus 300 ~~~~~~~~l~~l~~~~~~~~~~-~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~--~~~~~~l~ 371 (635)
T 4g8a_A 300 DLFNCLTNVSSFSLVSVTIERV-K--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN--AFSEVDLP 371 (635)
T ss_dssp TTTGGGTTCSEEEEESCEEEEC-G--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCC--BCCCCBCT
T ss_pred hhhhhhcccccccccccccccc-c--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCC--Cccccccc
Confidence 3344455556666655555442 1 244455566666666554322111 11112222222222111 11122334
Q ss_pred CccEEecCCCCccC--CCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEec
Q 045139 476 KFSELDVSAAEISD--TVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLIL 553 (820)
Q Consensus 476 ~L~~L~l~~n~i~~--~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l 553 (820)
+|+.+++++|.+.. ..+..+... .+|+.+++..|. ..+..+ .+..+.
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~~~~~~-------------------------~~~~~~-~~~~l~---- 420 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGT-ISLKYLDLSFNG-------------------------VITMSS-NFLGLE---- 420 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSC-SCCCEEECCSCS-------------------------EEEECS-CCTTCT----
T ss_pred ccccchhhccccccccccccchhhh-hhhhhhhccccc-------------------------cccccc-cccccc----
Confidence 44444444444321 112222211 233333333332 221111 011111
Q ss_pred cCcccccccchhhccccccccEEEccCCccccccC-cccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCccc
Q 045139 554 FKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELP-NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFI 632 (820)
Q Consensus 554 ~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 632 (820)
.++.++++.++.....+ ..+..+++++.++++.|++.+..+..+..+++|++|++++|.+.
T Consensus 421 ------------------~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~ 482 (635)
T 4g8a_A 421 ------------------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 482 (635)
T ss_dssp ------------------TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred ------------------cccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence 67777777776654443 45677778888888888888777777778888888888887643
Q ss_pred -ccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchh
Q 045139 633 -GELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC 711 (820)
Q Consensus 633 -~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 711 (820)
+..|..+..+++|++|+|++|++++..|..+. ++++|++|+|++|++++..|..+..+++|++|||++|++++..|..
T Consensus 483 ~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred cccCchhhhhccccCEEECCCCccCCcChHHHc-CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 45677778888888888888888877777776 6888888888888888777777888888888888888888777777
Q ss_pred cccc-ccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC--Cccc-ccCCCEEeC
Q 045139 712 LNNL-TAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP--EVTS-LVGLISLNL 787 (820)
Q Consensus 712 l~~l-~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip--~l~~-l~~L~~L~L 787 (820)
+.++ ++| +.|||++|+++-.=. .|.. +..-.....
T Consensus 562 l~~l~~~L-----------------------------------------~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~ 600 (635)
T 4g8a_A 562 LQHFPSSL-----------------------------------------AFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 600 (635)
T ss_dssp TTCCCTTC-----------------------------------------CEEECTTCCBCCSGGGHHHHHHHHHTTTTBS
T ss_pred HHhhhCcC-----------------------------------------CEEEeeCCCCcccCCcHHHHHHHHhCCCccC
Confidence 7665 345 778888888764211 1110 111111111
Q ss_pred CCCccccCCcccccCCCCCCeEeCCCCcCcc
Q 045139 788 SKNSLTGPIPSKIGGLTLLNSLDLSKNMLMR 818 (820)
Q Consensus 788 s~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g 818 (820)
....++-.-|..+.+. .+..+|++ .++||
T Consensus 601 ~~~~~~C~~P~~~~g~-~l~~~~~~-C~~~g 629 (635)
T 4g8a_A 601 EVERMECATPSDKQGM-PVLSLNIT-CQMTG 629 (635)
T ss_dssp CGGGCBBCSSTTTTTC-BGGGCCCC-C----
T ss_pred CCCCceeCCchHHCCC-EeeeeccC-CCCCC
Confidence 2234455567776653 46677775 67776
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.2e-41 Score=389.16 Aligned_cols=459 Identities=21% Similarity=0.289 Sum_probs=314.5
Q ss_pred CeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCc
Q 045139 192 EYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLV 271 (820)
Q Consensus 192 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~ 271 (820)
+++++++++++.. |..+. ++|++|++++|.+++..+ ..+.++ ++|++|++++|.+++..|..+..+. +|+
T Consensus 34 ~~l~ls~~~L~~i---p~~~~--~~L~~L~Ls~N~i~~~~~---~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~ 103 (562)
T 3a79_B 34 SMVDYSNRNLTHV---PKDLP--PRTKALSLSQNSISELRM---PDISFL-SELRVLRLSHNRIRSLDFHVFLFNQ-DLE 103 (562)
T ss_dssp CEEECTTSCCCSC---CTTSC--TTCCEEECCSSCCCCCCG---GGTTTC-TTCCEEECCSCCCCEECTTTTTTCT-TCC
T ss_pred cEEEcCCCCCccC---CCCCC--CCcCEEECCCCCccccCh---hhhccC-CCccEEECCCCCCCcCCHHHhCCCC-CCC
Confidence 5556666666653 33332 788888888888888777 566777 8899999999988877677666666 999
Q ss_pred EEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCc--chhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCc--
Q 045139 272 YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV--PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTL-- 347 (820)
Q Consensus 272 ~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~i--p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L-- 347 (820)
+|++++|.++ .+|.. .+++|++|++++|+++.+ |..|+++++|++|++++|++++. .+..++ +|
T Consensus 104 ~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~-----~L~L 171 (562)
T 3a79_B 104 YLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVA-----HLHL 171 (562)
T ss_dssp EEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGT-----TSCE
T ss_pred EEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhh-----hcee
Confidence 9999999998 78865 789999999999999865 47899999999999999999873 345555 45
Q ss_pred cEEEcCCCCC--cccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccc-cccCCCCCCEEecCCCc-----Ccccc
Q 045139 348 EILQLNSNML--RGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTK-SIGQLSQLELLDVASNS-----LKGMI 418 (820)
Q Consensus 348 ~~L~L~~n~l--~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~-----l~~~~ 418 (820)
+.|++++|.+ .+..|. +..+.. +.+ .++++.|.+.+.++. .+..+++|+.+++++|. +.+.+
T Consensus 172 ~~L~L~~n~l~~~~~~~~~l~~l~~-~~l--------~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~ 242 (562)
T 3a79_B 172 SCILLDLVSYHIKGGETESLQIPNT-TVL--------HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242 (562)
T ss_dssp EEEEEEESSCCCCSSSCCEEEECCE-EEE--------EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH
T ss_pred eEEEeecccccccccCcccccccCc-ceE--------EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH
Confidence 9999999998 776666 544432 333 346677777765544 56678899999999985 33322
Q ss_pred CHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhh--
Q 045139 419 TEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFW-- 496 (820)
Q Consensus 419 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~-- 496 (820)
+ .+..+++|+.++++++.+.+.... .++.++ ...+|++|++++|.+++.+|..++
T Consensus 243 ~--~l~~l~~L~~L~L~~~~l~~~~~~--------------------~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~ 299 (562)
T 3a79_B 243 S--ELTRGPTLLNVTLQHIETTWKCSV--------------------KLFQFF-WPRPVEYLNIYNLTITERIDREEFTY 299 (562)
T ss_dssp H--HHHSCSSCEEEEEEEEEECHHHHH--------------------HHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCC
T ss_pred H--HHhccCcceEEEecCCcCcHHHHH--------------------HHHHhh-hcccccEEEEeccEeeccccchhhhc
Confidence 2 478889999999888776432111 111122 234777788888877777777653
Q ss_pred --ccCCCcEEEEcCCCcCCCCCCc-ccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccc
Q 045139 497 --DLSPNLYYLNLSHNHFTGMLPD-LSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHF 573 (820)
Q Consensus 497 --~~~~~L~~L~ls~n~l~~~~p~-~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L 573 (820)
..++.|+.+++..+.+ .+|. .+.... ...++
T Consensus 300 ~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~--------------------------------------------~~~~L 333 (562)
T 3a79_B 300 SETALKSLMIEHVKNQVF--LFSKEALYSVF--------------------------------------------AEMNI 333 (562)
T ss_dssp CSCSCCEEEEEEEEECCC--SSCHHHHHHHH--------------------------------------------HTCCC
T ss_pred ccccchheehhhccccee--ecChhhhhhhh--------------------------------------------ccCcc
Confidence 2223455555555544 2221 000000 00056
Q ss_pred cEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccc--cCCcchhcCCCCCEEECC
Q 045139 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG--ELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 574 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls 651 (820)
+.|++++|.+.... ....+++|++|++++|++++.+|..++.+++|++|++++|++++ .+|..+.++++|++|+++
T Consensus 334 ~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 334 KMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp SEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred eEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 67777777664221 12566777777777777777777777777777777777777775 334567777777888888
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
+|++++.+|......+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+.+++.|
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L------------- 475 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL------------- 475 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC-------------
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC-------------
Confidence 88777656655434677778888888877776666554 57778888888777 666666566655
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-C-cccccCCCEEeCCCCccccCCc
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-E-VTSLVGLISLNLSKNSLTGPIP 797 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~-l~~l~~L~~L~Ls~N~l~~~ip 797 (820)
+.|||++|+++ .+| . +..+++|+.|++++|.+++..|
T Consensus 476 ----------------------------~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 476 ----------------------------QELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp ----------------------------SEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred ----------------------------CEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 77788888877 555 4 7777788888888887776543
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.9e-41 Score=376.23 Aligned_cols=183 Identities=19% Similarity=0.217 Sum_probs=90.3
Q ss_pred ccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCC
Q 045139 109 SSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQL 188 (820)
Q Consensus 109 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l 188 (820)
+.-.+.++|++|++++|.+ +. +|+.++++++|++|++++|.+.|.+|.+++++++|+++++..|. .
T Consensus 5 p~~~~~~~L~~L~l~~n~l-~~-iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~------------~ 70 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNL-TE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL------------D 70 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH------------H
T ss_pred ccccccccchhhhcccCch-hh-CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh------------c
Confidence 4444568999999999999 54 99999999999999999999999999999999999888887661 1
Q ss_pred CCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCC
Q 045139 189 SFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSS 268 (820)
Q Consensus 189 ~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 268 (820)
..+++|++++|.+++.+.+ .++|++|++++|.+++ +|. . . ++|++|++++|.+++ ++. ..+
T Consensus 71 ~~l~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~-lp~---~---~-~~L~~L~l~~n~l~~-l~~----~~~ 131 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTE-LPE---L---P-QSLKSLLVDNNNLKA-LSD----LPP 131 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSS-CCC---C---C-TTCCEEECCSSCCSC-CCS----CCT
T ss_pred cCCCEEEecCCccccCCCC------cCCCCEEEccCCcCCc-ccc---c---c-CCCcEEECCCCccCc-ccC----CCC
Confidence 4556666666666553321 2456666666666655 221 1 1 455555555555543 111 112
Q ss_pred CCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCC
Q 045139 269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTD 330 (820)
Q Consensus 269 ~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~ 330 (820)
+|++|++++|.+++ +| + ++++++|++|++++|+++.+|..+ ++|++|++++|++++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~-~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~ 187 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-E-LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE 187 (454)
T ss_dssp TCCEEECCSSCCSS-CC-C-CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS
T ss_pred CCCEEECcCCCCCC-Cc-c-cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc
Confidence 55555555555552 44 2 555555555555555555444322 244444444444444
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.5e-39 Score=359.48 Aligned_cols=370 Identities=19% Similarity=0.176 Sum_probs=201.0
Q ss_pred CccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccc-cccccCCCCCCEEecCCCcCccccCHHHh
Q 045139 346 TLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTL-TKSIGQLSQLELLDVASNSLKGMITEAHL 423 (820)
Q Consensus 346 ~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~l 423 (820)
+|++|++++|.+++..|. ++.+++|++|+++ +|.+.+.+ +..|.++++|++|++++|.+++..|. .+
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~----------~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~ 99 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVE----------QQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AF 99 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECC----------CCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-TT
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECc----------CCcccceECcccccccccCCEEeCCCCccCccChh-hc
Confidence 566666666666655444 5555555544333 33333222 34455555666666666665554343 45
Q ss_pred hcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcE
Q 045139 424 SNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLY 503 (820)
Q Consensus 424 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~ 503 (820)
+++++|++|++++|.+.+..+.. ..+..+++|++|++++|.+.+..|..++..+++|+
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSG----------------------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHS----------------------STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred cCcccCCEEeCCCCCCCccccCc----------------------ccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 55556666666655554322211 11455555555555555555555554333335555
Q ss_pred EEEcCCCcCCCCCCccccccc--CCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCC
Q 045139 504 YLNLSHNHFTGMLPDLSQKFT--AYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDN 581 (820)
Q Consensus 504 ~L~ls~n~l~~~~p~~~~~~~--~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n 581 (820)
+|++++|++++..|..+..+. .+ +.+++++|.+.+..+....... .+.. ....+|++|++++|
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L-~~L~l~~n~l~~~~~~~~~~~~------------~~~~--~~~~~L~~L~Ls~n 222 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHF-TLLRLSSITLQDMNEYWLGWEK------------CGNP--FKNTSITTLDLSGN 222 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEE-EEEECTTCBCTTCSTTCTTHHH------------HCCT--TTTCEEEEEECTTS
T ss_pred EEeCCCCcccccChhhhhccccccc-cccccccCcccccchhhccccc------------cccc--cccceeeeEecCCC
Confidence 555555555555444333221 11 2333333333221111100000 0000 00015666666666
Q ss_pred ccccccCcccccC---CCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhc--CCCCCEEECCCCcCc
Q 045139 582 LLSGELPNCSKNW---QKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKS--FTQLTVLDLGHNKIS 656 (820)
Q Consensus 582 ~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~Ls~N~l~ 656 (820)
++++..|..+... ++|+.|++++|.+.+... ..+.+.+..+..+.. .++|++|++++|+++
T Consensus 223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 288 (455)
T 3v47_A 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288 (455)
T ss_dssp CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred cccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCcccc
Confidence 6666666555443 566666666665443211 011111122222222 256777777777777
Q ss_pred cccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCcccc
Q 045139 657 GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDY 736 (820)
Q Consensus 657 ~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~ 736 (820)
+.+|..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.+++.|
T Consensus 289 ~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------------ 349 (455)
T 3v47_A 289 ALLKSVFS-HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL------------------ 349 (455)
T ss_dssp EECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC------------------
T ss_pred ccchhhcc-cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC------------------
Confidence 66666665 57777777777777776666677777777777777777766666666666655
Q ss_pred ccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCc
Q 045139 737 YNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNM 815 (820)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~ 815 (820)
+.|||++|++++.+| .+..+++|++|+|++|++++..+..|..+++|++|++++|+
T Consensus 350 -----------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 350 -----------------------EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp -----------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -----------------------CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 667777777776666 67777777777777777776555566777777777777777
Q ss_pred Cccc
Q 045139 816 LMRA 819 (820)
Q Consensus 816 l~g~ 819 (820)
++|.
T Consensus 407 l~~~ 410 (455)
T 3v47_A 407 WDCS 410 (455)
T ss_dssp BCCC
T ss_pred cccC
Confidence 7665
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3e-40 Score=350.58 Aligned_cols=293 Identities=28% Similarity=0.412 Sum_probs=239.0
Q ss_pred cCCHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCcc--cCceEecCCC--CcEEEEEcCCCCCCCCcc--cccccccC
Q 045139 40 KCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCK--WRGVSCSNQT--GHVTMLNLQFRSYMPLRG--NISSSLIG 113 (820)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~l~g--~i~~~l~~ 113 (820)
.|.++|++||++||+++.+|. .+.+|. .+.+||. |.||+|+..+ ++|+.|+|++ +.+.| .+|+.+++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~---~~l~~~~~~~~~l~~ 74 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG---LNLPKPYPIPSSLAN 74 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC---CCCSSCEECCGGGGG
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC---CCccCCcccChhHhC
Confidence 599999999999999998876 789997 4678998 9999998654 8999999999 89999 99999999
Q ss_pred CCCCCEEECcC-CCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCC
Q 045139 114 LQHLNYLNMKY-NDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLE 192 (820)
Q Consensus 114 l~~L~~L~Ls~-n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~ 192 (820)
+++|++|++++ |.+.+. +|..++++++|++|+|++|.+++.+|..++++++|++|++++|
T Consensus 75 l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N------------------ 135 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN------------------ 135 (313)
T ss_dssp CTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS------------------
T ss_pred CCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC------------------
Confidence 99999999995 999886 9999999999999999999999999999999999999999988
Q ss_pred eeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcE
Q 045139 193 YVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVY 272 (820)
Q Consensus 193 ~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~ 272 (820)
.+.+ .+|..++++++|++|++++|.+++.+| ..+..+.++|++|++++|.+++.+|..+... +|++
T Consensus 136 -------~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l--~L~~ 201 (313)
T 1ogq_A 136 -------ALSG--TLPPSISSLPNLVGITFDGNRISGAIP---DSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAF 201 (313)
T ss_dssp -------EEES--CCCGGGGGCTTCCEEECCSSCCEEECC---GGGGCCCTTCCEEECCSSEEEEECCGGGGGC--CCSE
T ss_pred -------ccCC--cCChHHhcCCCCCeEECcCCcccCcCC---HHHhhhhhcCcEEECcCCeeeccCChHHhCC--cccE
Confidence 2221 234556677777777777777776666 5566662378888888888887777776665 3888
Q ss_pred EEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEc
Q 045139 273 LDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQL 352 (820)
Q Consensus 273 L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L 352 (820)
|++++|.+++.+|.. +..+++|++|++++|+++..++.+..+++|++|++++|++++.+|..+..++ +|+.|++
T Consensus 202 L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-----~L~~L~L 275 (313)
T 1ogq_A 202 VDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK-----FLHSLNV 275 (313)
T ss_dssp EECCSSEEEECCGGG-CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT-----TCCEEEC
T ss_pred EECcCCcccCcCCHH-HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCc-----CCCEEEC
Confidence 888888888666655 8888888888888888885555577888888888888888888888888877 7888888
Q ss_pred CCCCCcccCCCCcCcCCCcEEecCCC
Q 045139 353 NSNMLRGSLPDITLFSSLKELHLYDN 378 (820)
Q Consensus 353 ~~n~l~~~~p~~~~l~~L~~L~l~~n 378 (820)
++|++++.+|....+++|+.+++++|
T Consensus 276 s~N~l~~~ip~~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 276 SFNNLCGEIPQGGNLQRFDVSAYANN 301 (313)
T ss_dssp CSSEEEEECCCSTTGGGSCGGGTCSS
T ss_pred cCCcccccCCCCccccccChHHhcCC
Confidence 88888877777666666666555443
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.3e-38 Score=351.86 Aligned_cols=387 Identities=21% Similarity=0.240 Sum_probs=262.5
Q ss_pred cEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCC-Ccc-hhhhccCCCcEEEc
Q 045139 246 AHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVP-KSFRNLCRLRALYQ 323 (820)
Q Consensus 246 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~-~ip-~~l~~l~~L~~L~L 323 (820)
+.++.+++.++ .+|. ..++|++|++++|.+++..|.. |+++++|++|++++|.+. .++ ..|.++++|++|++
T Consensus 13 ~~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 13 YNAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TEEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred cccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 34556666554 3443 2236777777777776433444 667777777777777665 443 34666666777777
Q ss_pred CCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCC
Q 045139 324 DSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQ 403 (820)
Q Consensus 324 ~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~ 403 (820)
++|++++..|..|..++ +|++|++++|.+++.++. ...+..+++
T Consensus 87 s~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~-------------------------------~~~~~~l~~ 130 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLA-----NLEVLTLTQCNLDGAVLS-------------------------------GNFFKPLTS 130 (455)
T ss_dssp TTCTTCEECTTTTTTCT-----TCCEEECTTSCCBTHHHH-------------------------------SSTTTTCTT
T ss_pred CCCccCccChhhccCcc-----cCCEEeCCCCCCCccccC-------------------------------cccccCccc
Confidence 76666666666666665 666666666666543222 011444444
Q ss_pred CCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCc--cccceeecccccCCCCCchh--------hhc
Q 045139 404 LELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPS--FELNIIRLGACKQGPQFPKW--------LQT 473 (820)
Q Consensus 404 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------l~~ 473 (820)
|++|++++|.+++..|...+.++++|++|++++|.+.+..+..+... ..++.+++++|.+....+.+ +..
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 210 (455)
T 3v47_A 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210 (455)
T ss_dssp CCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTT
T ss_pred CCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccc
Confidence 44444444444443333224444455555555554444443333322 33444444444444333322 235
Q ss_pred CCCccEEecCCCCccCCCCchhhccC--CCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEE
Q 045139 474 QNKFSELDVSAAEISDTVPNWFWDLS--PNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSL 551 (820)
Q Consensus 474 ~~~L~~L~l~~n~i~~~~p~~~~~~~--~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l 551 (820)
+++|++|++++|.+.+..|..+.... ++++.|++++|...+.... .+.+.+..+..+..+
T Consensus 211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~--- 272 (455)
T 3v47_A 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---------------HTNFKDPDNFTFKGL--- 272 (455)
T ss_dssp TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT---------------CCSSCCCCTTTTGGG---
T ss_pred cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc---------------hhhhccCcccccccc---
Confidence 57788888888888877777665432 5788888888876543211 111111111111110
Q ss_pred eccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcc
Q 045139 552 ILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSF 631 (820)
Q Consensus 552 ~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 631 (820)
...+|++|++++|.+++..|..+..+++|++|++++|++++..|..|+.+++|++|++++|.+
T Consensus 273 -----------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 273 -----------------EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp -----------------TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred -----------------cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 011799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccch
Q 045139 632 IGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQ 710 (820)
Q Consensus 632 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 710 (820)
++..|..+.++++|++|++++|++++..|.++. .+++|++|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999999999999988898887 799999999999999987777789999999999999999998873
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.8e-38 Score=349.64 Aligned_cols=356 Identities=24% Similarity=0.317 Sum_probs=178.4
Q ss_pred CCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCC-------------CEEECCCCCCCCcc
Q 045139 243 RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSL-------------SYLDLSNNQLVSVP 309 (820)
Q Consensus 243 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L-------------~~L~Ls~n~l~~ip 309 (820)
+.|++|++++|.+ +.+|.+++++. +|++|++++|.++|.+|.. ++.+++| ++|++++|+++.+|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~-~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVK-SKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp ------------------------C-CHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccchhhhcccCch-hhCChhHhccc-chhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 4455555555555 45555554444 5555555555555555555 5555443 55555555555544
Q ss_pred hhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCc
Q 045139 310 KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNR 389 (820)
Q Consensus 310 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~ 389 (820)
.. .++|++|++++|.+++ +|..+ . +|+.|++++|.+.+ +|.+ .++|++| ++++|.
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~~---~-----~L~~L~l~~n~l~~-l~~~--~~~L~~L----------~L~~n~ 142 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPELP---Q-----SLKSLLVDNNNLKA-LSDL--PPLLEYL----------GVSNNQ 142 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCCC---T-----TCCEEECCSSCCSC-CCSC--CTTCCEE----------ECCSSC
T ss_pred CC---cCCCCEEEccCCcCCc-ccccc---C-----CCcEEECCCCccCc-ccCC--CCCCCEE----------ECcCCC
Confidence 31 2445555555555554 23211 2 45555555555543 1111 0233333 223333
Q ss_pred ccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCch
Q 045139 390 FTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPK 469 (820)
Q Consensus 390 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 469 (820)
+++ +| .++++++|++|++++|++++ +|. ..++|++|++++|++.+ +|
T Consensus 143 l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~-------------------------l~- 189 (454)
T 1jl5_A 143 LEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEE-------------------------LP- 189 (454)
T ss_dssp CSS-CC-CCTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS-------------------------CC-
T ss_pred CCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCc-------------------------Cc-
Confidence 332 33 35555555555555555544 332 12345555555554432 22
Q ss_pred hhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcce
Q 045139 470 WLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVT 549 (820)
Q Consensus 470 ~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~ 549 (820)
.+..+++|++|++++|.+++ +|.. .++|++|++++|.++ .+|. +..++.+ +.+++++|++++ +|..+.
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp~-~~~l~~L-~~L~l~~N~l~~-l~~~~~--- 257 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE-ELPE-LQNLPFL-TTIYADNNLLKT-LPDLPP--- 257 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SCCC-CTTCTTC-CEEECCSSCCSS-CCSCCT---
T ss_pred cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-cccc-cCCCCCC-CEEECCCCcCCc-cccccc---
Confidence 23444455555555555443 2221 135555555555555 3332 3444444 555555555543 222211
Q ss_pred EEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCC
Q 045139 550 SLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNN 629 (820)
Q Consensus 550 ~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 629 (820)
+|++|++++|++++ +|.. .++|++|++++|++++. |.. .++|++|++++|
T Consensus 258 ----------------------~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N 307 (454)
T 1jl5_A 258 ----------------------SLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSN 307 (454)
T ss_dssp ----------------------TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSS
T ss_pred ----------------------ccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCC
Confidence 66777777777764 4433 36777777777777752 211 156778888888
Q ss_pred cccccCCcchhcC-CCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCcc--
Q 045139 630 SFIGELPSSVKSF-TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG-- 706 (820)
Q Consensus 630 ~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-- 706 (820)
++++. + .+ ++|++|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++
T Consensus 308 ~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~ 373 (454)
T 1jl5_A 308 EIRSL-C----DLPPSLEELNVSNNKLIE-LPAL----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFP 373 (454)
T ss_dssp CCSEE-C----CCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCC
T ss_pred cCCcc-c----CCcCcCCEEECCCCcccc-cccc----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCC
Confidence 77752 2 22 478888888888874 6643 567888888888887 4665 46788888888888887
Q ss_pred ccchhcccc
Q 045139 707 TVPQCLNNL 715 (820)
Q Consensus 707 ~~p~~l~~l 715 (820)
.+|..+.++
T Consensus 374 ~ip~~l~~L 382 (454)
T 1jl5_A 374 DIPESVEDL 382 (454)
T ss_dssp CCCTTCCEE
T ss_pred CChHHHHhh
Confidence 566655543
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.5e-37 Score=343.61 Aligned_cols=273 Identities=23% Similarity=0.235 Sum_probs=213.6
Q ss_pred cccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchh
Q 045139 104 RGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLE 183 (820)
Q Consensus 104 ~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~ 183 (820)
.+..+.+++++++|++|++++|.+++ +| .++.+++|++|++++|.+++ +| ++.+++|++|++++|. +.. +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~-l~~--~- 100 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNK-LTN--L- 100 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC-CSC--C-
T ss_pred CcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCC-Cce--e-
Confidence 33445577888899999999998876 55 68888999999999999886 44 8888999999999882 222 2
Q ss_pred hccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhh
Q 045139 184 WLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWL 263 (820)
Q Consensus 184 ~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~ 263 (820)
.++++++|++|++++|.+.+. + ++++++|++|++++|.+++. + ++.+ ++|++|++++|...+.++ +
T Consensus 101 ~~~~l~~L~~L~L~~N~l~~l---~--~~~l~~L~~L~l~~N~l~~l-~-----l~~l-~~L~~L~l~~n~~~~~~~--~ 166 (457)
T 3bz5_A 101 DVTPLTKLTYLNCDTNKLTKL---D--VSQNPLLTYLNCARNTLTEI-D-----VSHN-TQLTELDCHLNKKITKLD--V 166 (457)
T ss_dssp CCTTCTTCCEEECCSSCCSCC---C--CTTCTTCCEEECTTSCCSCC-C-----CTTC-TTCCEEECTTCSCCCCCC--C
T ss_pred ecCCCCcCCEEECCCCcCCee---c--CCCCCcCCEEECCCCcccee-c-----cccC-CcCCEEECCCCCcccccc--c
Confidence 278888999999999988874 2 78899999999999998884 2 4555 889999999997666653 4
Q ss_pred hccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCC
Q 045139 264 FNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCS 343 (820)
Q Consensus 264 ~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 343 (820)
.... +|++|++++|.+++ +| ++.+++|++|++++|+++.++ ++.+++|++|++++|++++. | +..++
T Consensus 167 ~~l~-~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~i-p--~~~l~--- 233 (457)
T 3bz5_A 167 TPQT-QLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI-D--VTPLT--- 233 (457)
T ss_dssp TTCT-TCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C--CTTCT---
T ss_pred ccCC-cCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccccc-C--ccccC---
Confidence 4444 99999999999984 66 778999999999999999874 88899999999999999984 4 66676
Q ss_pred cCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccC
Q 045139 344 RDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMIT 419 (820)
Q Consensus 344 ~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 419 (820)
+|+.|++++|++++.. .+.+++|+.|+++.|.++.+++++|.+.+.+| ++.+++|+.|++++|...+.+|
T Consensus 234 --~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 234 --QLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp --TCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred --CCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 8999999999998753 56788899998888777777777777666655 3456666666666665544433
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.3e-36 Score=334.82 Aligned_cols=360 Identities=23% Similarity=0.246 Sum_probs=228.8
Q ss_pred HhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCC
Q 045139 210 VVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAF 289 (820)
Q Consensus 210 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l 289 (820)
.++++++|++|++++|.+++. | .+..+ ++|++|++++|.+++. | +.... +|++|++++|.+++ ++ +
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~----~l~~l-~~L~~L~Ls~n~l~~~-~--~~~l~-~L~~L~Ls~N~l~~-~~---~ 102 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T----GIEKL-TGLTKLICTSNNITTL-D--LSQNT-NLTYLACDSNKLTN-LD---V 102 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T----TGGGC-TTCSEEECCSSCCSCC-C--CTTCT-TCSEEECCSSCCSC-CC---C
T ss_pred ChhHcCCCCEEEccCCCcccC-h----hhccc-CCCCEEEccCCcCCeE-c--cccCC-CCCEEECcCCCCce-ee---c
Confidence 455567777777777777654 2 34444 6677777777766653 2 33333 66777777766663 33 5
Q ss_pred CCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCC
Q 045139 290 PNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSS 369 (820)
Q Consensus 290 ~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~ 369 (820)
+.+++|++|++++|+++.+| ++.+++|++|++++|++++. + +..++ +|+.|++++|...+.+ .++.+++
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~-----~L~~L~l~~n~~~~~~-~~~~l~~ 171 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI-D--VSHNT-----QLTELDCHLNKKITKL-DVTPQTQ 171 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC-C--CTTCT-----TCCEEECTTCSCCCCC-CCTTCTT
T ss_pred CCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcccee-c--cccCC-----cCCEEECCCCCccccc-ccccCCc
Confidence 66666777777766666654 66666666666666666664 1 44444 5666666666544444 3455555
Q ss_pred CcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcC
Q 045139 370 LKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVP 449 (820)
Q Consensus 370 L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 449 (820)
|++|++++| ++++ +| +..+++|+.|++++|++++. .++.+++|++|++++|++++
T Consensus 172 L~~L~ls~n----------~l~~-l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~-------- 226 (457)
T 3bz5_A 172 LTTLDCSFN----------KITE-LD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE-------- 226 (457)
T ss_dssp CCEEECCSS----------CCCC-CC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC--------
T ss_pred CCEEECCCC----------ccce-ec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccc--------
Confidence 555444333 3332 22 45556666666666666553 25555666666666665532
Q ss_pred ccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCc
Q 045139 450 SFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPE 529 (820)
Q Consensus 450 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~ 529 (820)
+| +..+++|+.|++++|++++..+.. +++|+.|++++|++ +.
T Consensus 227 -----------------ip--~~~l~~L~~L~l~~N~l~~~~~~~----l~~L~~L~l~~n~L---------------~~ 268 (457)
T 3bz5_A 227 -----------------ID--VTPLTQLTYFDCSVNPLTELDVST----LSKLTTLHCIQTDL---------------LE 268 (457)
T ss_dssp -----------------CC--CTTCTTCSEEECCSSCCSCCCCTT----CTTCCEEECTTCCC---------------SC
T ss_pred -----------------cC--ccccCCCCEEEeeCCcCCCcCHHH----CCCCCEEeccCCCC---------------CE
Confidence 23 455666777777777776643222 25677777666543 45
Q ss_pred eeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeee
Q 045139 530 IDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSG 609 (820)
Q Consensus 530 l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 609 (820)
+++++|.+.|.+|. ..+. +|+.|++++|...+.+|. ...+|+.|++++|
T Consensus 269 L~l~~n~~~~~~~~--~~l~----------------------~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~---- 317 (457)
T 3bz5_A 269 IDLTHNTQLIYFQA--EGCR----------------------KIKELDVTHNTQLYLLDC---QAAGITELDLSQN---- 317 (457)
T ss_dssp CCCTTCTTCCEEEC--TTCT----------------------TCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC----
T ss_pred EECCCCccCCcccc--cccc----------------------cCCEEECCCCcccceecc---CCCcceEechhhc----
Confidence 56666666655542 1111 677888888877766664 3455666655554
Q ss_pred cCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccC
Q 045139 610 KIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVC 689 (820)
Q Consensus 610 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~ 689 (820)
++|++|++++|++++. + ++++++|+.|++++|++++ ++.|..|++++|.+.|. .
T Consensus 318 ---------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~ 371 (457)
T 3bz5_A 318 ---------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----G 371 (457)
T ss_dssp ---------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----E
T ss_pred ---------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----c
Confidence 6889999999999984 3 8899999999999999985 34566678999999876 3
Q ss_pred CCCCCCEEeCcCCCCccccchhccc
Q 045139 690 HLQRIQVLDLSQNNISGTVPQCLNN 714 (820)
Q Consensus 690 ~l~~L~~L~Ls~N~l~~~~p~~l~~ 714 (820)
.+..|+.+++++|+++|.+|..+..
T Consensus 372 ~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 372 QTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp EEEECCCBCCBTTBEEEECCTTCBC
T ss_pred eeeecCccccccCcEEEEcChhHhc
Confidence 4567888999999999999987644
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.6e-34 Score=323.16 Aligned_cols=324 Identities=27% Similarity=0.378 Sum_probs=157.4
Q ss_pred CCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCcc
Q 045139 269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLE 348 (820)
Q Consensus 269 ~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~ 348 (820)
+++.|+++++.+. .+|. +..+++|++|++++|.++.+|+ +.++++|++|++++|++++..+ +..++ +|+
T Consensus 47 ~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~-----~L~ 115 (466)
T 1o6v_A 47 QVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLT-----NLT 115 (466)
T ss_dssp TCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCT-----TCC
T ss_pred cccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCCC-----CCC
Confidence 5555566555555 3442 5555566666666666655554 5556666666666666655444 55554 566
Q ss_pred EEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCC
Q 045139 349 ILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSR 428 (820)
Q Consensus 349 ~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 428 (820)
+|++++|.+.+. +.+..+++|++|++++| .+++ ++ .+..+++|+.|+++ |.+.+. + .+.++++
T Consensus 116 ~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n----------~l~~-~~-~~~~l~~L~~L~l~-~~~~~~-~--~~~~l~~ 178 (466)
T 1o6v_A 116 GLTLFNNQITDI-DPLKNLTNLNRLELSSN----------TISD-IS-ALSGLTSLQQLSFG-NQVTDL-K--PLANLTT 178 (466)
T ss_dssp EEECCSSCCCCC-GGGTTCTTCSEEEEEEE----------EECC-CG-GGTTCTTCSEEEEE-ESCCCC-G--GGTTCTT
T ss_pred EEECCCCCCCCC-hHHcCCCCCCEEECCCC----------ccCC-Ch-hhccCCcccEeecC-CcccCc-h--hhccCCC
Confidence 666666655533 22455555554443332 2222 12 25556666666664 333332 2 2555666
Q ss_pred CCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcC
Q 045139 429 LTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLS 508 (820)
Q Consensus 429 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls 508 (820)
|++|++++|.+... ..+..+++|++|++++|.+.+..| +. .+++|+.|+++
T Consensus 179 L~~L~l~~n~l~~~--------------------------~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~ 229 (466)
T 1o6v_A 179 LERLDISSNKVSDI--------------------------SVLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLN 229 (466)
T ss_dssp CCEEECCSSCCCCC--------------------------GGGGGCTTCSEEECCSSCCCCCGG--GG-GCTTCCEEECC
T ss_pred CCEEECcCCcCCCC--------------------------hhhccCCCCCEEEecCCccccccc--cc-ccCCCCEEECC
Confidence 66666666654321 123444555555555555544433 11 23456666666
Q ss_pred CCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccC
Q 045139 509 HNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELP 588 (820)
Q Consensus 509 ~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 588 (820)
+|++++. + .+..++ +|+.|++++|.+++..|
T Consensus 230 ~n~l~~~-~-~l~~l~-----------------------------------------------~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 230 GNQLKDI-G-TLASLT-----------------------------------------------NLTDLDLANNQISNLAP 260 (466)
T ss_dssp SSCCCCC-G-GGGGCT-----------------------------------------------TCSEEECCSSCCCCCGG
T ss_pred CCCcccc-h-hhhcCC-----------------------------------------------CCCEEECCCCccccchh
Confidence 6555432 1 111111 34444444444443322
Q ss_pred cccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCC
Q 045139 589 NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLP 668 (820)
Q Consensus 589 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~ 668 (820)
+..+++|++|++++|++++..+ +..+++|++|++++|++.+..+ +..+++|++|++++|++++..| +. .++
T Consensus 261 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~-~l~ 331 (466)
T 1o6v_A 261 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS-SLT 331 (466)
T ss_dssp --GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG-GCT
T ss_pred --hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc-cCc
Confidence 4444455555555555443222 4444555555555555544322 4445555555555555544333 22 345
Q ss_pred CccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccc
Q 045139 669 DLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP 709 (820)
Q Consensus 669 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 709 (820)
+|++|++++|++++. ..+..+++|+.|++++|++++..|
T Consensus 332 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 555555555555432 234445555555555555544443
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.5e-34 Score=325.28 Aligned_cols=346 Identities=26% Similarity=0.379 Sum_probs=262.0
Q ss_pred CCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCC
Q 045139 291 NPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSL 370 (820)
Q Consensus 291 ~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L 370 (820)
.+++++.|+++++.++.+|. +..+++|++|++++|.+++..+ +..++ +|++|++++|.+.+..+ ++.+++|
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~-----~L~~L~l~~n~l~~~~~-~~~l~~L 114 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLT-----KLVDILMNNNQIADITP-LANLTNL 114 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCT-----TCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh--hhccc-----cCCEEECCCCccccChh-hcCCCCC
Confidence 46789999999999998875 8889999999999999998765 77777 89999999998886554 7777777
Q ss_pred cEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCc
Q 045139 371 KELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPS 450 (820)
Q Consensus 371 ~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 450 (820)
++|++++| .+++. +. +.++++|++|++++|.+++ ++ .+..+++|++|++++ .+.
T Consensus 115 ~~L~L~~n----------~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~-~~~---------- 168 (466)
T 1o6v_A 115 TGLTLFNN----------QITDI-DP-LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGN-QVT---------- 168 (466)
T ss_dssp CEEECCSS----------CCCCC-GG-GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEE-SCC----------
T ss_pred CEEECCCC----------CCCCC-hH-HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCC-ccc----------
Confidence 77655544 44433 22 7778888888888888776 33 377788888887753 221
Q ss_pred cccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCce
Q 045139 451 FELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEI 530 (820)
Q Consensus 451 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l 530 (820)
..+ .+..+++|++|++++|.+.+. + .+.. +++|++|++++|.+.+..|. ..++
T Consensus 169 ---------------~~~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~-l~~L~~L~l~~n~l~~~~~~--~~l~------ 221 (466)
T 1o6v_A 169 ---------------DLK-PLANLTTLERLDISSNKVSDI-S-VLAK-LTNLESLIATNNQISDITPL--GILT------ 221 (466)
T ss_dssp ---------------CCG-GGTTCTTCCEEECCSSCCCCC-G-GGGG-CTTCSEEECCSSCCCCCGGG--GGCT------
T ss_pred ---------------Cch-hhccCCCCCEEECcCCcCCCC-h-hhcc-CCCCCEEEecCCcccccccc--cccC------
Confidence 111 266777788888888777653 2 2322 35677777777766654331 1111
Q ss_pred eccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeec
Q 045139 531 DLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGK 610 (820)
Q Consensus 531 ~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 610 (820)
+|+.|++++|++++. ..+..+++|++|++++|++.+.
T Consensus 222 -----------------------------------------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 222 -----------------------------------------NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp -----------------------------------------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred -----------------------------------------CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc
Confidence 678888888888753 4678889999999999999865
Q ss_pred CCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCC
Q 045139 611 IPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCH 690 (820)
Q Consensus 611 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~ 690 (820)
.| +..+++|++|++++|.+++..+ +..+++|++|++++|++++..| +. .+++|+.|++++|++++..| +..
T Consensus 259 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~-~l~~L~~L~L~~n~l~~~~~--~~~ 329 (466)
T 1o6v_A 259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS-NLKNLTYLTLYFNNISDISP--VSS 329 (466)
T ss_dssp GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG-GCTTCSEEECCSSCCSCCGG--GGG
T ss_pred hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc-CCCCCCEEECcCCcCCCchh--hcc
Confidence 54 8888999999999999986544 8889999999999999986544 44 68999999999999987665 678
Q ss_pred CCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCe
Q 045139 691 LQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLY 770 (820)
Q Consensus 691 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 770 (820)
+++|+.|++++|++++. ..+.+++.| +.|++++|+++
T Consensus 330 l~~L~~L~l~~n~l~~~--~~l~~l~~L-----------------------------------------~~L~l~~n~l~ 366 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSDV--SSLANLTNI-----------------------------------------NWLSAGHNQIS 366 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTC-----------------------------------------CEEECCSSCCC
T ss_pred CccCCEeECCCCccCCc--hhhccCCCC-----------------------------------------CEEeCCCCccC
Confidence 89999999999998864 345555555 88999999998
Q ss_pred ecCCCcccccCCCEEeCCCCcccc
Q 045139 771 GEIPEVTSLVGLISLNLSKNSLTG 794 (820)
Q Consensus 771 ~~ip~l~~l~~L~~L~Ls~N~l~~ 794 (820)
+.+| +..+++|+.|++++|.+++
T Consensus 367 ~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 367 DLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp BCGG-GTTCTTCCEEECCCEEEEC
T ss_pred ccch-hhcCCCCCEEeccCCcccC
Confidence 7777 8888999999999999886
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=319.06 Aligned_cols=319 Identities=20% Similarity=0.204 Sum_probs=184.3
Q ss_pred ccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhc
Q 045139 347 LEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSN 425 (820)
Q Consensus 347 L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~ 425 (820)
-+.++.+++.++. +|. + .+.++.| ++++|++++..+..|.++++|++|++++|.+++..|. .|.+
T Consensus 13 ~~~v~c~~~~l~~-ip~~~--~~~l~~L----------~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~ 78 (477)
T 2id5_A 13 DRAVLCHRKRFVA-VPEGI--PTETRLL----------DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNN 78 (477)
T ss_dssp TTEEECCSCCCSS-CCSCC--CTTCSEE----------ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTT
T ss_pred CCEEEeCCCCcCc-CCCCC--CCCCcEE----------ECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhC
Confidence 3466666666653 333 2 2344433 3444445545555666666666666666666654443 4666
Q ss_pred CCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEE
Q 045139 426 LSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYL 505 (820)
Q Consensus 426 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L 505 (820)
+++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..|..+..+ ++|++|
T Consensus 79 l~~L~~L~L~~n~l~~------------------------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L 133 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKL------------------------IPLGVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSL 133 (477)
T ss_dssp CTTCCEEECCSSCCCS------------------------CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEE
T ss_pred CccCCEEECCCCcCCc------------------------cCcccccCCCCCCEEECCCCccccCChhHcccc-ccCCEE
Confidence 6666666666665532 222234445555555555555544444433332 344444
Q ss_pred EcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCcccc
Q 045139 506 NLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSG 585 (820)
Q Consensus 506 ~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 585 (820)
++++|.+.+..+. .+..+. +|+.|++++|++++
T Consensus 134 ~l~~n~l~~~~~~-------------------------~~~~l~----------------------~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 134 EVGDNDLVYISHR-------------------------AFSGLN----------------------SLEQLTLEKCNLTS 166 (477)
T ss_dssp EECCTTCCEECTT-------------------------SSTTCT----------------------TCCEEEEESCCCSS
T ss_pred ECCCCccceeChh-------------------------hccCCC----------------------CCCEEECCCCcCcc
Confidence 4444444332222 111111 56666666666665
Q ss_pred ccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccC-cchh
Q 045139 586 ELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIP-AWIG 664 (820)
Q Consensus 586 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~ 664 (820)
..+..+..+++|+.|++++|++.+..+..|..+++|++|++++|.+.+.+|.......+|++|++++|+++ .+| ..+.
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~ 245 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVR 245 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHT
T ss_pred cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhc
Confidence 55555666677777777777766666666666667777777766666666655555556667777776666 344 3333
Q ss_pred cCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEE
Q 045139 665 DSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLV 744 (820)
Q Consensus 665 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (820)
.+++|++|+|++|++++..+..+..+++|+.|++++|++++..|..|.+++.|
T Consensus 246 -~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------------------- 298 (477)
T 2id5_A 246 -HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL-------------------------- 298 (477)
T ss_dssp -TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC--------------------------
T ss_pred -CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC--------------------------
Confidence 56666666666666666666666666666666666666666666666665555
Q ss_pred eeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCcccc
Q 045139 745 WKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTG 794 (820)
Q Consensus 745 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~ 794 (820)
+.|||++|++++..+ .+..+++|+.|+|++|.++.
T Consensus 299 ---------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 299 ---------------RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp ---------------CEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ---------------CEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 666666666664444 45666666666666666664
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.7e-33 Score=312.23 Aligned_cols=321 Identities=20% Similarity=0.201 Sum_probs=198.6
Q ss_pred CcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcc-hhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCcc
Q 045139 270 LVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLE 348 (820)
Q Consensus 270 L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~ 348 (820)
-+.++.+++.++ .+|.. + .+++++|++++|+++.++ ..|.++++|++|++++|.+++..|..|.+++ +|+
T Consensus 13 ~~~v~c~~~~l~-~ip~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-----~L~ 83 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEG-I--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-----NLR 83 (477)
T ss_dssp TTEEECCSCCCS-SCCSC-C--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCC
T ss_pred CCEEEeCCCCcC-cCCCC-C--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc-----cCC
Confidence 356777777777 67765 3 356777777777777553 4577777777777777777777677776666 677
Q ss_pred EEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCC
Q 045139 349 ILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLS 427 (820)
Q Consensus 349 ~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 427 (820)
+|++++|.+.+..+. +..+++|++|+++ +|.+++..+..|..+++|+.|++++|.+++..+. .|.+++
T Consensus 84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls----------~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~ 152 (477)
T 2id5_A 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDIS----------ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR-AFSGLN 152 (477)
T ss_dssp EEECCSSCCCSCCTTSSTTCTTCCEEECT----------TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT-SSTTCT
T ss_pred EEECCCCcCCccCcccccCCCCCCEEECC----------CCccccCChhHccccccCCEEECCCCccceeChh-hccCCC
Confidence 777777666644433 4445555544322 3333333444445555555555555555443222 344444
Q ss_pred CCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEc
Q 045139 428 RLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNL 507 (820)
Q Consensus 428 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l 507 (820)
+|++|++++|.+. +..+..+..+ ++|+.|++
T Consensus 153 ~L~~L~l~~n~l~------------------------~~~~~~l~~l-------------------------~~L~~L~l 183 (477)
T 2id5_A 153 SLEQLTLEKCNLT------------------------SIPTEALSHL-------------------------HGLIVLRL 183 (477)
T ss_dssp TCCEEEEESCCCS------------------------SCCHHHHTTC-------------------------TTCCEEEE
T ss_pred CCCEEECCCCcCc------------------------ccChhHhccc-------------------------CCCcEEeC
Confidence 4444444444332 1111222222 34444444
Q ss_pred CCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCcccccc
Q 045139 508 SHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGEL 587 (820)
Q Consensus 508 s~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 587 (820)
++|.+.+..+..+. .+. +|+.|++++|...+.+
T Consensus 184 ~~n~i~~~~~~~~~-------------------------~l~----------------------~L~~L~l~~~~~~~~~ 216 (477)
T 2id5_A 184 RHLNINAIRDYSFK-------------------------RLY----------------------RLKVLEISHWPYLDTM 216 (477)
T ss_dssp ESCCCCEECTTCSC-------------------------SCT----------------------TCCEEEEECCTTCCEE
T ss_pred CCCcCcEeChhhcc-------------------------cCc----------------------ccceeeCCCCcccccc
Confidence 44444332222111 111 6677777777666666
Q ss_pred CcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCC
Q 045139 588 PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSL 667 (820)
Q Consensus 588 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l 667 (820)
|.......+|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+. .+
T Consensus 217 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l 295 (477)
T 2id5_A 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR-GL 295 (477)
T ss_dssp CTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT-TC
T ss_pred CcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc-Cc
Confidence 66666666788888888888754445677778888888888888877777777888888888888888877777776 67
Q ss_pred CCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccc
Q 045139 668 PDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGT 707 (820)
Q Consensus 668 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 707 (820)
++|++|+|++|++++..+..|..+++|+.|++++|++...
T Consensus 296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 8888888888888766666677778888888888877643
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.4e-33 Score=295.45 Aligned_cols=250 Identities=26% Similarity=0.444 Sum_probs=202.8
Q ss_pred CcEEEEcCCCcCCC--CCCcccccccCCCCceeccC-CcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEE
Q 045139 501 NLYYLNLSHNHFTG--MLPDLSQKFTAYPPEIDLSA-NSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLD 577 (820)
Q Consensus 501 ~L~~L~ls~n~l~~--~~p~~~~~~~~l~~~l~ls~-n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~ 577 (820)
+++.|++++|.+.+ .+|..+..++.+ +.|++++ |.+.+.+|..+..+. +|++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L-~~L~L~~~n~l~~~~p~~l~~l~----------------------~L~~L~ 107 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYL-NFLYIGGINNLVGPIPPAIAKLT----------------------QLHYLY 107 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTC-SEEEEEEETTEESCCCGGGGGCT----------------------TCSEEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCC-CeeeCCCCCcccccCChhHhcCC----------------------CCCEEE
Confidence 34455555555554 444444444444 5555552 555554444333333 788999
Q ss_pred ccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCC-CCCEEECCCCcCc
Q 045139 578 LSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFT-QLTVLDLGHNKIS 656 (820)
Q Consensus 578 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~ 656 (820)
+++|++++.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|++++.+|..+..++ +|++|++++|+++
T Consensus 108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 999999888999999999999999999999988999999999999999999999989999999988 8999999999999
Q ss_pred cccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCcccc
Q 045139 657 GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDY 736 (820)
Q Consensus 657 ~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~ 736 (820)
+.+|..+. .++ |++|++++|++++..|..+..+++|+.|++++|++++.+|. +..++.|
T Consensus 188 ~~~~~~~~-~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L------------------ 246 (313)
T 1ogq_A 188 GKIPPTFA-NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNL------------------ 246 (313)
T ss_dssp EECCGGGG-GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTC------------------
T ss_pred ccCChHHh-CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCC------------------
Confidence 89998887 566 99999999999988899999999999999999999876665 5555555
Q ss_pred ccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCc
Q 045139 737 YNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNM 815 (820)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~ 815 (820)
+.|||++|++++.+| .+..+++|++|+|++|+++|.+|.. +.+++|+.+++++|+
T Consensus 247 -----------------------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 247 -----------------------NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp -----------------------CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred -----------------------CEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 889999999999999 8999999999999999999999986 889999999999998
Q ss_pred -Ccc
Q 045139 816 -LMR 818 (820)
Q Consensus 816 -l~g 818 (820)
+.|
T Consensus 303 ~lc~ 306 (313)
T 1ogq_A 303 CLCG 306 (313)
T ss_dssp EEES
T ss_pred CccC
Confidence 555
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-31 Score=293.78 Aligned_cols=242 Identities=20% Similarity=0.251 Sum_probs=129.4
Q ss_pred CCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEE
Q 045139 401 LSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSEL 480 (820)
Q Consensus 401 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 480 (820)
+++++.|++++|.++. +|...+..+++|++|++++|.+....+..+..+..|+.|++++|.+.+..|..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhh-CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4566777777776665 444456667777777777777665555555555555666666665555566666777777777
Q ss_pred ecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCccccc
Q 045139 481 DVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSG 560 (820)
Q Consensus 481 ~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~ 560 (820)
++++|.+++ +|...+..+++|++|++++|++++..|..+..++
T Consensus 123 ~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------------------------------------ 165 (390)
T 3o6n_A 123 VLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT------------------------------------ 165 (390)
T ss_dssp ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT------------------------------------
T ss_pred ECCCCccCc-CCHHHhcCCCCCcEEECCCCccCccChhhccCCC------------------------------------
Confidence 777777763 3433333345677777777776665554444433
Q ss_pred ccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchh
Q 045139 561 SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVK 640 (820)
Q Consensus 561 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 640 (820)
+|++|++++|++++. .+..+++|+.|++++|.+++. ...++|++|++++|.+... |. .
T Consensus 166 -----------~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~--~ 223 (390)
T 3o6n_A 166 -----------SLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RG--P 223 (390)
T ss_dssp -----------TCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-EC--C
T ss_pred -----------CCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-cc--c
Confidence 344444444444422 133344444455554444421 1223445555555554432 11 1
Q ss_pred cCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCc
Q 045139 641 SFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS 705 (820)
Q Consensus 641 ~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 705 (820)
..++|++|++++|++++. .++. .+++|++|++++|++++..|..+..+++|+.|++++|+++
T Consensus 224 ~~~~L~~L~l~~n~l~~~--~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 224 VNVELTILKLQHNNLTDT--AWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp CCSSCCEEECCSSCCCCC--GGGG-GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred ccccccEEECCCCCCccc--HHHc-CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc
Confidence 124455555555555432 2333 3555555555555555544555555555555555555554
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-31 Score=293.32 Aligned_cols=287 Identities=24% Similarity=0.312 Sum_probs=188.5
Q ss_pred cCCCCCCEEECcCCCCCCcccCcc-ccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCC
Q 045139 112 IGLQHLNYLNMKYNDFGGKQIPAF-IGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSF 190 (820)
Q Consensus 112 ~~l~~L~~L~Ls~n~l~~~~~p~~-i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 190 (820)
..+.++++|++++|.+.. +|.. +..+++|++|++++|.+++..|..++.+++|++|++++| .+....+..++++++
T Consensus 42 ~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred cccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCC
Confidence 456788999999888865 5554 678889999999999888766778888899999999888 333334445677777
Q ss_pred CCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCC
Q 045139 191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL 270 (820)
Q Consensus 191 L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 270 (820)
|++|++++|.+...+ +..++++++|++|++++|.+++..+ ..+..+ ++|++|++++|.+++.- +... ++|
T Consensus 119 L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l-~~L~~L~l~~n~l~~~~---~~~l-~~L 188 (390)
T 3o6n_A 119 LTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIED---DTFQAT-TSLQNLQLSSNRLTHVD---LSLI-PSL 188 (390)
T ss_dssp CCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCT---TTTSSC-TTCCEEECCSSCCSBCC---GGGC-TTC
T ss_pred CCEEECCCCccCcCC--HHHhcCCCCCcEEECCCCccCccCh---hhccCC-CCCCEEECCCCcCCccc---cccc-ccc
Confidence 888888777776532 1235677778888887777777666 445555 77777777777776531 2223 377
Q ss_pred cEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEE
Q 045139 271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350 (820)
Q Consensus 271 ~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L 350 (820)
++|++++|.+++ + ...++|++|++++|.++.+|... .++|++|++++|.+++. ..+..++ +|+.|
T Consensus 189 ~~L~l~~n~l~~-~-----~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~-----~L~~L 253 (390)
T 3o6n_A 189 FHANVSYNLLST-L-----AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYP-----GLVEV 253 (390)
T ss_dssp SEEECCSSCCSE-E-----ECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCT-----TCSEE
T ss_pred ceeecccccccc-c-----CCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCC-----CccEE
Confidence 777777777662 2 23456777777777777665432 35677777777777664 3455555 67777
Q ss_pred EcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCC
Q 045139 351 QLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRL 429 (820)
Q Consensus 351 ~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 429 (820)
++++|.+.+..|. +..+++|++|++++|.++. +|..+..+++|++|++++|++++ +|. .+..+++|
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~~l~~L 320 (390)
T 3o6n_A 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-----------LNLYGQPIPTLKVLDLSHNHLLH-VER-NQPQFDRL 320 (390)
T ss_dssp ECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-----------EECSSSCCTTCCEEECCSSCCCC-CGG-GHHHHTTC
T ss_pred ECCCCcCCCcChhHccccccCCEEECCCCcCcc-----------cCcccCCCCCCCEEECCCCccee-cCc-cccccCcC
Confidence 7777766665555 5666666655554444332 23344556666666666666654 333 35556666
Q ss_pred CEEeCcCCcc
Q 045139 430 TYLDLSHNSL 439 (820)
Q Consensus 430 ~~L~Ls~n~l 439 (820)
++|++++|++
T Consensus 321 ~~L~L~~N~i 330 (390)
T 3o6n_A 321 ENLYLDHNSI 330 (390)
T ss_dssp SEEECCSSCC
T ss_pred CEEECCCCcc
Confidence 6666666665
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=1.3e-30 Score=281.44 Aligned_cols=190 Identities=26% Similarity=0.402 Sum_probs=151.3
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+|++|++++|.+.+..+ +..+++|++|++++|++.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|+++
T Consensus 156 ~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 156 GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred CCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEcc
Confidence 67777777777764433 7788888888888888875333 7788889999999988886544 7888999999999
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
+|++++..+ +. .+++|++|++++|++++. ..+..+++|+.|++++|++++. +.+..++.|
T Consensus 230 ~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L------------- 289 (347)
T 4fmz_A 230 NNKITDLSP--LA-NLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL------------- 289 (347)
T ss_dssp SSCCCCCGG--GT-TCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC-------------
T ss_pred CCccCCCcc--hh-cCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC-------------
Confidence 999885433 54 789999999999998853 4688899999999999998853 345555555
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD 810 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld 810 (820)
+.|++++|++++..| .++.+++|+.|++++|++++..| +..+++|++||
T Consensus 290 ----------------------------~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 339 (347)
T 4fmz_A 290 ----------------------------NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339 (347)
T ss_dssp ----------------------------SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred ----------------------------CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence 889999999988877 88999999999999999997666 78899999999
Q ss_pred CCCCcCc
Q 045139 811 LSKNMLM 817 (820)
Q Consensus 811 Ls~N~l~ 817 (820)
+++|+|+
T Consensus 340 l~~N~i~ 346 (347)
T 4fmz_A 340 FANQVIK 346 (347)
T ss_dssp SSCC---
T ss_pred hhhhccc
Confidence 9999986
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=6.8e-31 Score=304.41 Aligned_cols=277 Identities=17% Similarity=0.190 Sum_probs=130.8
Q ss_pred CCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEE
Q 045139 401 LSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSEL 480 (820)
Q Consensus 401 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 480 (820)
+.+++.+++++|.+.. +|...+..+++|++|++++|.+.+..+..+..+..|+.|++++|.+.+..|..+..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 3455556666555554 333345555666666666665554444444444444444444444445555556666666666
Q ss_pred ecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCccccc
Q 045139 481 DVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSG 560 (820)
Q Consensus 481 ~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~ 560 (820)
++++|.+++..+..+. .+++|++|++++|.+++..|..+..++.+ +.|++++|.+++..+..+.
T Consensus 129 ~L~~n~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~l~-------------- 192 (597)
T 3oja_B 129 VLERNDLSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSL-QNLQLSSNRLTHVDLSLIP-------------- 192 (597)
T ss_dssp ECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTC-CEEECTTSCCSBCCGGGCT--------------
T ss_pred EeeCCCCCCCCHHHhc-cCCCCCEEEeeCCcCCCCChhhhhcCCcC-cEEECcCCCCCCcChhhhh--------------
Confidence 6666666533333222 23566666666666665555444444333 3333333333321100000
Q ss_pred ccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchh
Q 045139 561 SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVK 640 (820)
Q Consensus 561 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 640 (820)
+|+.|++++|.+++ +...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+.
T Consensus 193 -----------~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~ 251 (597)
T 3oja_B 193 -----------SLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLL 251 (597)
T ss_dssp -----------TCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGG
T ss_pred -----------hhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--Chhhc
Confidence 44444555444442 122234555555555544322211 1344455555554443 23444
Q ss_pred cCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139 641 SFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM 718 (820)
Q Consensus 641 ~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 718 (820)
.+++|++|+|++|.+++..|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..++.|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L 326 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred cCCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence 444455555555554444444444 34444444444444443 3334444444444444444444 344434333333
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.4e-30 Score=278.27 Aligned_cols=302 Identities=25% Similarity=0.380 Sum_probs=184.0
Q ss_pred CCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCcc
Q 045139 269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLE 348 (820)
Q Consensus 269 ~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~ 348 (820)
+|++|++++|.+. .+|. +..+++|++|++++|+++.++. +..+++|++|++++|.+++. ..+..++ +|+
T Consensus 45 ~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~-----~L~ 113 (347)
T 4fmz_A 45 SITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDI--SALQNLT-----NLR 113 (347)
T ss_dssp TCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCT-----TCS
T ss_pred cccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCc--hHHcCCC-----cCC
Confidence 7777777777776 4553 6677777777777777777665 77777777777777777663 2355555 666
Q ss_pred EEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCC
Q 045139 349 ILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSR 428 (820)
Q Consensus 349 ~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 428 (820)
+|++++|.+.+. +.+..+++|+.|++++ |.....++ .+..+++|++|++++|.+.+.. . +..+++
T Consensus 114 ~L~l~~n~i~~~-~~~~~l~~L~~L~l~~----------n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~--~~~l~~ 178 (347)
T 4fmz_A 114 ELYLNEDNISDI-SPLANLTKMYSLNLGA----------NHNLSDLS-PLSNMTGLNYLTVTESKVKDVT-P--IANLTD 178 (347)
T ss_dssp EEECTTSCCCCC-GGGTTCTTCCEEECTT----------CTTCCCCG-GGTTCTTCCEEECCSSCCCCCG-G--GGGCTT
T ss_pred EEECcCCcccCc-hhhccCCceeEEECCC----------CCCccccc-chhhCCCCcEEEecCCCcCCch-h--hccCCC
Confidence 666666666532 2244444444443332 21111111 2444555555555555544321 1 444444
Q ss_pred CCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcC
Q 045139 429 LTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLS 508 (820)
Q Consensus 429 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls 508 (820)
|++|++++|.+ .+..+ + ..+++|+.++++
T Consensus 179 L~~L~l~~n~l------------------------------------------------~~~~~--~-~~l~~L~~L~l~ 207 (347)
T 4fmz_A 179 LYSLSLNYNQI------------------------------------------------EDISP--L-ASLTSLHYFTAY 207 (347)
T ss_dssp CSEEECTTSCC------------------------------------------------CCCGG--G-GGCTTCCEEECC
T ss_pred CCEEEccCCcc------------------------------------------------ccccc--c-cCCCccceeecc
Confidence 44444444443 32211 1 112455555555
Q ss_pred CCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccC
Q 045139 509 HNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELP 588 (820)
Q Consensus 509 ~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 588 (820)
+|.+.+..+ +..++ +|++|++++|.+++..+
T Consensus 208 ~n~l~~~~~--~~~~~-----------------------------------------------~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 208 VNQITDITP--VANMT-----------------------------------------------RLNSLKIGNNKITDLSP 238 (347)
T ss_dssp SSCCCCCGG--GGGCT-----------------------------------------------TCCEEECCSSCCCCCGG
T ss_pred cCCCCCCch--hhcCC-----------------------------------------------cCCEEEccCCccCCCcc
Confidence 555443322 11111 56677777777664333
Q ss_pred cccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCC
Q 045139 589 NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLP 668 (820)
Q Consensus 589 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~ 668 (820)
+..+++|++|++++|++++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..|..+. .++
T Consensus 239 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~ 311 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG-GLT 311 (347)
T ss_dssp --GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH-TCT
T ss_pred --hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh-ccc
Confidence 67777778888888777753 4577778888888888887754 4577888888888888888877777776 688
Q ss_pred CccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCc
Q 045139 669 DLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS 705 (820)
Q Consensus 669 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 705 (820)
+|++|++++|++++..| +..+++|+.|++++|+++
T Consensus 312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888888888886655 777888888888888775
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=8e-31 Score=303.83 Aligned_cols=332 Identities=22% Similarity=0.199 Sum_probs=198.1
Q ss_pred CCCCCCCCCCCCCCcc----cCceEecCC----C------------CcEEEEEcCCCCCCCCcccccccccCCCCCCEEE
Q 045139 62 HLSSWGNEDDKKDCCK----WRGVSCSNQ----T------------GHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLN 121 (820)
Q Consensus 62 ~~~~W~~~~~~~~~c~----w~gv~c~~~----~------------~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~ 121 (820)
.+++|. .+.+||. |.++.|+.. . ..++.+++++ +.+.+..+..+.++++|++|+
T Consensus 8 ~l~~~~---~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~---~~l~~lp~~~~~~l~~L~~L~ 81 (597)
T 3oja_B 8 NVKPRQ---PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN---STMRKLPAALLDSFRQVELLN 81 (597)
T ss_dssp ---CCC---SEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESS---CEESEECTHHHHHCCCCSEEE
T ss_pred cccCCC---CCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeC---CCCCCcCHHHHccCCCCcEEE
Confidence 456787 4667774 666555310 0 1234455554 333332223456677777777
Q ss_pred CcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccC
Q 045139 122 MKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNL 201 (820)
Q Consensus 122 Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 201 (820)
|++|.+.+. .|..|+.+++|++|+|++|.+++..|..|+++++|++|+|++| .+.......++++++|++|++++|.+
T Consensus 82 L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 82 LNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp CTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 777777663 4556677777777777777777666666677777777777776 22222222356677777777777766
Q ss_pred CCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCccc
Q 045139 202 GEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQ 281 (820)
Q Consensus 202 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 281 (820)
.+. .+..++.+++|++|++++|.+++... ..+ ++|+.|++++|.+++.. ..++|++|++++|.++
T Consensus 160 ~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~------~~l-~~L~~L~l~~n~l~~l~------~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 160 ERI--EDDTFQATTSLQNLQLSSNRLTHVDL------SLI-PSLFHANVSYNLLSTLA------IPIAVEELDASHNSIN 224 (597)
T ss_dssp CBC--CTTTTTTCTTCCEEECTTSCCSBCCG------GGC-TTCSEEECCSSCCSEEE------CCTTCSEEECCSSCCC
T ss_pred CCC--ChhhhhcCCcCcEEECcCCCCCCcCh------hhh-hhhhhhhcccCcccccc------CCchhheeeccCCccc
Confidence 653 33456667777777777776665422 223 66677777777665421 1226677777777666
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccC
Q 045139 282 GPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSL 361 (820)
Q Consensus 282 g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~ 361 (820)
.++.. + .++|++|++++|.++.. ..+..+++|++|++++|.+++..|..|..++ +|+.|++++|.+++..
T Consensus 225 -~~~~~-~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~l~ 294 (597)
T 3oja_B 225 -VVRGP-V--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-----RLERLYISNNRLVALN 294 (597)
T ss_dssp -EEECS-C--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCS-----SCCEEECTTSCCCEEE
T ss_pred -ccccc-c--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCcc-----CCCEEECCCCCCCCCC
Confidence 34433 1 25677777777776654 4566677777777777777776666666666 6777777777766543
Q ss_pred CCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCcccc
Q 045139 362 PDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLIL 441 (820)
Q Consensus 362 p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 441 (820)
+.+..+++|+.|++++| .++ .+|..+..+++|+.|++++|.+++. + +..+++|++|++++|++.+
T Consensus 295 ~~~~~l~~L~~L~Ls~N----------~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 295 LYGQPIPTLKVLDLSHN----------HLL-HVERNQPQFDRLENLYLDHNSIVTL-K---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CSSSCCTTCCEEECCSS----------CCC-CCGGGHHHHTTCSEEECCSSCCCCC-C---CCTTCCCSEEECCSSCEEH
T ss_pred cccccCCCCcEEECCCC----------CCC-ccCcccccCCCCCEEECCCCCCCCc-C---hhhcCCCCEEEeeCCCCCC
Confidence 33555666665544433 333 4555566667777777777776653 2 4556667777777776654
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=6.6e-32 Score=288.06 Aligned_cols=281 Identities=18% Similarity=0.218 Sum_probs=201.6
Q ss_pred cCCHHHHHHHHHhhccCC-CCCCCCCCCCCC-CCCCCCcccCceEec--------CCCCcEEEEEcCCCCCCCCcccccc
Q 045139 40 KCIERERQALLMFKQGLI-DEYGHLSSWGNE-DDKKDCCKWRGVSCS--------NQTGHVTMLNLQFRSYMPLRGNISS 109 (820)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~-~~~~~~~~W~~~-~~~~~~c~w~gv~c~--------~~~~~v~~L~L~~~~~~~l~g~i~~ 109 (820)
.+..+|++||++||+++. |+.+...+|... ....++|.|.|++|. ....+|+.|+|++ +.++ .+|+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~---n~l~-~lp~ 98 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS---VPLP-QFPD 98 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES---SCCS-SCCS
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC---CCch-hcCh
Confidence 456789999999999884 676667788310 136789999999994 2346899999998 7777 7888
Q ss_pred cccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCC
Q 045139 110 SLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLS 189 (820)
Q Consensus 110 ~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~ 189 (820)
.++++++|++|+|++|.+. . +|..++++++|++|+|++|.++ .+|..++++++|++|++++|. .....+..+..
T Consensus 99 ~l~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~-~~~~~p~~~~~-- 172 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM-E-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP-ELTELPEPLAS-- 172 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC-C-CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEET-TCCCCCSCSEE--
T ss_pred hhhhCCCCCEEECCCCCcc-c-hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCC-CccccChhHhh--
Confidence 8999999999999999998 3 8999999999999999999999 889899999999999999872 22222222221
Q ss_pred CCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCC
Q 045139 190 FLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSS 269 (820)
Q Consensus 190 ~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 269 (820)
. .+...+..+++|++|++++|.++ .+| ..+..+ ++|++|++++|.+++ +|..+.... +
T Consensus 173 ----~-----------~~~~~~~~l~~L~~L~L~~n~l~-~lp---~~l~~l-~~L~~L~L~~N~l~~-l~~~l~~l~-~ 230 (328)
T 4fcg_A 173 ----T-----------DASGEHQGLVNLQSLRLEWTGIR-SLP---ASIANL-QNLKSLKIRNSPLSA-LGPAIHHLP-K 230 (328)
T ss_dssp ----E-----------C-CCCEEESTTCCEEEEEEECCC-CCC---GGGGGC-TTCCEEEEESSCCCC-CCGGGGGCT-T
T ss_pred ----c-----------cchhhhccCCCCCEEECcCCCcC-cch---HhhcCC-CCCCEEEccCCCCCc-CchhhccCC-C
Confidence 0 00112334666666666666665 334 334555 666666666666663 444455544 7
Q ss_pred CcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCC-CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCcc
Q 045139 270 LVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLE 348 (820)
Q Consensus 270 L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~-~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~ 348 (820)
|++|++++|.+.+.+|.. ++.+++|++|++++|.+. .+|..+.++++|++|++++|++.+.+|..+..++ +|+
T Consensus 231 L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~-----~L~ 304 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP-----ANC 304 (328)
T ss_dssp CCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC-----TTC
T ss_pred CCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc-----Cce
Confidence 777777777777677765 777777777777776655 6677777777777777777777777777777777 777
Q ss_pred EEEcCCCCCc
Q 045139 349 ILQLNSNMLR 358 (820)
Q Consensus 349 ~L~L~~n~l~ 358 (820)
.+++..+.+.
T Consensus 305 ~l~l~~~~~~ 314 (328)
T 4fcg_A 305 IILVPPHLQA 314 (328)
T ss_dssp EEECCGGGSC
T ss_pred EEeCCHHHHH
Confidence 7777766554
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-32 Score=309.54 Aligned_cols=210 Identities=16% Similarity=0.131 Sum_probs=118.8
Q ss_pred cccEEEccCCccccc----cCcccccCCCCcEEEcCCCeeeecC-----CCCcccccCCcEEeccCCccccc----CCcc
Q 045139 572 HFRYLDLSDNLLSGE----LPNCSKNWQKLTVLNLANNKFSGKI-----PDSMDFNCMMLSLHLRNNSFIGE----LPSS 638 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~ 638 (820)
+|++|++++|.+++. ++..+..+++|++|++++|++.+.. +..+..+++|++|++++|.+++. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 445555555555432 3445556666666666666665422 11222456677777777766653 4556
Q ss_pred hhcCCCCCEEECCCCcCccccCcchhc----CCCCccEEEcCccccccc----CCcccCCCCCCCEEeCcCCCCccccch
Q 045139 639 VKSFTQLTVLDLGHNKISGIIPAWIGD----SLPDLVVLSLRSNNFHGR----VPVQVCHLQRIQVLDLSQNNISGTVPQ 710 (820)
Q Consensus 639 l~~l~~L~~L~Ls~N~l~~~~p~~l~~----~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 710 (820)
+..+++|++|++++|++++..+..+.. ..++|++|++++|.+++. +|..+..+++|+.|++++|++++..+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 666777777777777776543333321 225777777777777654 445556667777777777777655444
Q ss_pred hccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCee----cCC-CcccccCCCEE
Q 045139 711 CLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYG----EIP-EVTSLVGLISL 785 (820)
Q Consensus 711 ~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~----~ip-~l~~l~~L~~L 785 (820)
.+...-. ...+.|+.|++++|++++ .+| .+..+++|++|
T Consensus 360 ~l~~~l~------------------------------------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 360 ELCQGLG------------------------------------QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp HHHHHHT------------------------------------STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHHc------------------------------------CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence 4332100 001233677777777765 566 66677777777
Q ss_pred eCCCCccccCCccccc-----CCCCCCeEeCCCCcCc
Q 045139 786 NLSKNSLTGPIPSKIG-----GLTLLNSLDLSKNMLM 817 (820)
Q Consensus 786 ~Ls~N~l~~~ip~~l~-----~l~~L~~LdLs~N~l~ 817 (820)
++++|++++.....+. ...+|+.|++.++.+.
T Consensus 404 ~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp ECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred ECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 7777777644211111 1234566666555543
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.4e-29 Score=269.55 Aligned_cols=131 Identities=19% Similarity=0.169 Sum_probs=98.5
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 5677777777777666677788888888888888888777777888888888888888887 677778888888888888
Q ss_pred CCcCccccCcchhc-----CCCCccEEEcCccccc--ccCCcccCCCCCCCEEeCcCCC
Q 045139 652 HNKISGIIPAWIGD-----SLPDLVVLSLRSNNFH--GRVPVQVCHLQRIQVLDLSQNN 703 (820)
Q Consensus 652 ~N~l~~~~p~~l~~-----~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~ 703 (820)
+|++++..+..+.. ..+.|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 88888554444431 1367888888888877 5677788888888888888875
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.1e-28 Score=262.18 Aligned_cols=291 Identities=24% Similarity=0.317 Sum_probs=193.8
Q ss_pred CCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcch-hhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCc
Q 045139 269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTL 347 (820)
Q Consensus 269 ~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L 347 (820)
+++.++++++.++ .+|.. + .+++++|++++|+++.++. .|.++++|++|++++|++++..|..|..++ +|
T Consensus 32 ~l~~l~~~~~~l~-~lp~~-~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L 102 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKD-L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-----KL 102 (330)
T ss_dssp ETTEEECTTSCCC-SCCCS-C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-----TC
T ss_pred CCeEEEecCCCcc-ccCcc-C--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC-----CC
Confidence 6788888888877 67765 3 3577778888888776655 577777777777777777777677776666 67
Q ss_pred cEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCC
Q 045139 348 EILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLS 427 (820)
Q Consensus 348 ~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 427 (820)
++|++++|.++. +|. .+. ++|++|++++|.+++. +...+.+++
T Consensus 103 ~~L~Ls~n~l~~-l~~---------------------------------~~~--~~L~~L~l~~n~l~~~-~~~~~~~l~ 145 (330)
T 1xku_A 103 ERLYLSKNQLKE-LPE---------------------------------KMP--KTLQELRVHENEITKV-RKSVFNGLN 145 (330)
T ss_dssp CEEECCSSCCSB-CCS---------------------------------SCC--TTCCEEECCSSCCCBB-CHHHHTTCT
T ss_pred CEEECCCCcCCc-cCh---------------------------------hhc--ccccEEECCCCccccc-CHhHhcCCc
Confidence 777776666652 222 221 4666677777766653 333566677
Q ss_pred CCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEc
Q 045139 428 RLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNL 507 (820)
Q Consensus 428 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l 507 (820)
+|++|++++|.+... +..+..+..++ +|++|++
T Consensus 146 ~L~~L~l~~n~l~~~----------------------~~~~~~~~~l~-------------------------~L~~L~l 178 (330)
T 1xku_A 146 QMIVVELGTNPLKSS----------------------GIENGAFQGMK-------------------------KLSYIRI 178 (330)
T ss_dssp TCCEEECCSSCCCGG----------------------GBCTTGGGGCT-------------------------TCCEEEC
T ss_pred cccEEECCCCcCCcc----------------------CcChhhccCCC-------------------------CcCEEEC
Confidence 777777776665310 01122233333 4444444
Q ss_pred CCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCcccccc
Q 045139 508 SHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGEL 587 (820)
Q Consensus 508 s~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 587 (820)
++|.+++. |... + .+|++|++++|++++..
T Consensus 179 ~~n~l~~l-~~~~---------------------~----------------------------~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 179 ADTNITTI-PQGL---------------------P----------------------------PSLTELHLDGNKITKVD 208 (330)
T ss_dssp CSSCCCSC-CSSC---------------------C----------------------------TTCSEEECTTSCCCEEC
T ss_pred CCCccccC-Cccc---------------------c----------------------------ccCCEEECCCCcCCccC
Confidence 44443321 1100 0 06777888888887777
Q ss_pred CcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhc--
Q 045139 588 PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGD-- 665 (820)
Q Consensus 588 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-- 665 (820)
|..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~ 287 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc
Confidence 778888888888888888888777778888888888888888887 67778888888888888888888544444421
Q ss_pred ---CCCCccEEEcCcccccc--cCCcccCCCCCCCEEeCcCCC
Q 045139 666 ---SLPDLVVLSLRSNNFHG--RVPVQVCHLQRIQVLDLSQNN 703 (820)
Q Consensus 666 ---~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~ 703 (820)
..+.++.|++++|++.. ..|..+..+++++.+++++|+
T Consensus 288 ~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 13678888888888753 556778888888888888874
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=4.1e-29 Score=267.77 Aligned_cols=287 Identities=20% Similarity=0.239 Sum_probs=214.9
Q ss_pred CCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEec
Q 045139 403 QLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDV 482 (820)
Q Consensus 403 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 482 (820)
+++.++++++.++. +|.. + .++|++|++++|.+. +..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~-~--~~~l~~L~l~~n~i~------------------------~~~~~~~~~l~~L~~L~L 85 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKE-I--SPDTTLLDLQNNDIS------------------------ELRKDDFKGLQHLYALVL 85 (332)
T ss_dssp ETTEEECCSSCCSS-CCSC-C--CTTCCEEECCSSCCC------------------------EECTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCCCccc-cCCC-C--CCCCeEEECCCCcCC------------------------ccCHhHhhCCCCCcEEEC
Confidence 46666666666654 3331 1 245555555555543 233445666777777777
Q ss_pred CCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCccccccc
Q 045139 483 SAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSL 562 (820)
Q Consensus 483 ~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~ 562 (820)
++|.+++..|..+..+ ++|++|++++|+++...+. ..
T Consensus 86 ~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~--------------------------~~---------------- 122 (332)
T 2ft3_A 86 VNNKISKIHEKAFSPL-RKLQKLYISKNHLVEIPPN--------------------------LP---------------- 122 (332)
T ss_dssp CSSCCCEECGGGSTTC-TTCCEEECCSSCCCSCCSS--------------------------CC----------------
T ss_pred CCCccCccCHhHhhCc-CCCCEEECCCCcCCccCcc--------------------------cc----------------
Confidence 7777766666655543 5677777777766532111 00
Q ss_pred chhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeee--ecCCCCcccccCCcEEeccCCcccccCCcchh
Q 045139 563 SFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFS--GKIPDSMDFNCMMLSLHLRNNSFIGELPSSVK 640 (820)
Q Consensus 563 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 640 (820)
.+|++|++++|++++..+..+.++++|++|++++|+++ +..|..+..+ +|++|++++|++++ +|..+.
T Consensus 123 --------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~ 192 (332)
T 2ft3_A 123 --------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP 192 (332)
T ss_dssp --------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC
T ss_pred --------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc
Confidence 07889999999998776777899999999999999986 3677888888 89999999999986 565543
Q ss_pred cCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccc
Q 045139 641 SFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTA 720 (820)
Q Consensus 641 ~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 720 (820)
++|++|++++|++++..|..+. .+++|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+.+++.|
T Consensus 193 --~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L-- 266 (332)
T 2ft3_A 193 --ETLNELHLDHNKIQAIELEDLL-RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL-- 266 (332)
T ss_dssp --SSCSCCBCCSSCCCCCCTTSST-TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC--
T ss_pred --CCCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC--
Confidence 7899999999999977777777 7999999999999999888888999999999999999998 788888877777
Q ss_pred cccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-Cccc------ccCCCEEeCCCCccc
Q 045139 721 NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTS------LVGLISLNLSKNSLT 793 (820)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~------l~~L~~L~Ls~N~l~ 793 (820)
+.||+++|++++..+ .+.. ...|+.|++++|.+.
T Consensus 267 ---------------------------------------~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 267 ---------------------------------------QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp ---------------------------------------CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ---------------------------------------CEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 889999999985554 5554 367899999999988
Q ss_pred --cCCcccccCCCCCCeEeCCCCc
Q 045139 794 --GPIPSKIGGLTLLNSLDLSKNM 815 (820)
Q Consensus 794 --~~ip~~l~~l~~L~~LdLs~N~ 815 (820)
+..|..|..+++|+.+++++|+
T Consensus 308 ~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 308 YWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccCcccccccchhhhhhccccc
Confidence 6788889999999999999985
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.4e-32 Score=306.24 Aligned_cols=206 Identities=18% Similarity=0.152 Sum_probs=163.6
Q ss_pred cccEEEccCCccccccCcccc-----cCCCCcEEEcCCCeeeec----CCCCcccccCCcEEeccCCcccccC-----Cc
Q 045139 572 HFRYLDLSDNLLSGELPNCSK-----NWQKLTVLNLANNKFSGK----IPDSMDFNCMMLSLHLRNNSFIGEL-----PS 637 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~-----p~ 637 (820)
+|++|++++|.+++..+..+. ..++|++|++++|++++. ++..+..+++|++|++++|.+.+.. +.
T Consensus 171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 250 (461)
T 1z7x_W 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG 250 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence 677888888877654444333 356999999999999863 5777888999999999999987643 22
Q ss_pred chhcCCCCCEEECCCCcCccc----cCcchhcCCCCccEEEcCcccccccCCcccC-----CCCCCCEEeCcCCCCccc-
Q 045139 638 SVKSFTQLTVLDLGHNKISGI----IPAWIGDSLPDLVVLSLRSNNFHGRVPVQVC-----HLQRIQVLDLSQNNISGT- 707 (820)
Q Consensus 638 ~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~~- 707 (820)
.+..+++|++|++++|++++. ++..+. .+++|++|++++|++.+..+..+. ..++|+.|++++|++++.
T Consensus 251 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 233589999999999999864 677776 689999999999999765444333 236999999999999865
Q ss_pred ---cchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-Cccc-----
Q 045139 708 ---VPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTS----- 778 (820)
Q Consensus 708 ---~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~----- 778 (820)
+|..+..++.| +.||+++|++++..+ .+..
T Consensus 330 ~~~l~~~l~~~~~L-----------------------------------------~~L~Ls~n~i~~~~~~~l~~~l~~~ 368 (461)
T 1z7x_W 330 CSHFSSVLAQNRFL-----------------------------------------LELQISNNRLEDAGVRELCQGLGQP 368 (461)
T ss_dssp HHHHHHHHHHCSSC-----------------------------------------CEEECCSSBCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHhhCCCc-----------------------------------------cEEEccCCccccccHHHHHHHHcCC
Confidence 44555555555 899999999987655 5543
Q ss_pred ccCCCEEeCCCCcccc----CCcccccCCCCCCeEeCCCCcCccc
Q 045139 779 LVGLISLNLSKNSLTG----PIPSKIGGLTLLNSLDLSKNMLMRA 819 (820)
Q Consensus 779 l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~LdLs~N~l~g~ 819 (820)
.++|++|++++|++++ .+|..+..+++|++||+++|++++.
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 6799999999999996 7899999999999999999999763
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.5e-28 Score=263.13 Aligned_cols=267 Identities=18% Similarity=0.219 Sum_probs=192.8
Q ss_pred CccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccC
Q 045139 476 KFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFK 555 (820)
Q Consensus 476 ~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~ 555 (820)
.++.|++++|.+++..+..+..+ ++|++|++++|++++..|..+..++.+ +.|++++|.++ .+|....
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~-~l~~~~~--------- 120 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKL-ERLYLSKNQLK-ELPEKMP--------- 120 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTC-CEEECCSSCCS-BCCSSCC---------
T ss_pred CCeEEECCCCcCCEeChhhhccC-CCCCEEECCCCcCCeeCHHHhcCCCCC-CEEECCCCcCC-ccChhhc---------
Confidence 44444444444444333333322 345555555555554444444444444 45555555444 2222110
Q ss_pred cccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeee--cCCCCcccccCCcEEeccCCcccc
Q 045139 556 NMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSG--KIPDSMDFNCMMLSLHLRNNSFIG 633 (820)
Q Consensus 556 n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~ 633 (820)
.+|++|++++|.+++..+..+.++++|++|++++|++.. ..+..+..+++|++|++++|.+++
T Consensus 121 ---------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 121 ---------------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp ---------------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred ---------------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 078889999999987777788899999999999999863 677888899999999999999885
Q ss_pred cCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcc
Q 045139 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLN 713 (820)
Q Consensus 634 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 713 (820)
+|..+. ++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|..+.
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 555443 7899999999999987788887 7899999999999999888888889999999999999998 7888777
Q ss_pred ccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-Cccc------ccCCCEEe
Q 045139 714 NLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTS------LVGLISLN 786 (820)
Q Consensus 714 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~------l~~L~~L~ 786 (820)
.++.| +.|++++|++++..+ .+.. ...|+.|+
T Consensus 261 ~l~~L-----------------------------------------~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~ 299 (330)
T 1xku_A 261 DHKYI-----------------------------------------QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299 (330)
T ss_dssp TCSSC-----------------------------------------CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred cCCCc-----------------------------------------CEEECCCCcCCccChhhcCCcccccccccccceE
Confidence 77766 889999999985544 5543 37889999
Q ss_pred CCCCcccc--CCcccccCCCCCCeEeCCCCc
Q 045139 787 LSKNSLTG--PIPSKIGGLTLLNSLDLSKNM 815 (820)
Q Consensus 787 Ls~N~l~~--~ip~~l~~l~~L~~LdLs~N~ 815 (820)
+++|.+.. ..|..|..+..++.+||++|+
T Consensus 300 l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred eecCcccccccCccccccccceeEEEecccC
Confidence 99999863 567889999999999999985
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.7e-31 Score=308.83 Aligned_cols=465 Identities=15% Similarity=0.089 Sum_probs=264.1
Q ss_pred CCCcccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCC---CcccCcccc------------
Q 045139 73 KDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFG---GKQIPAFIG------------ 137 (820)
Q Consensus 73 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~---~~~~p~~i~------------ 137 (820)
.-|++|.++.+. ..+ .+.+.. ......+..+.++++|++|+++++... +. +|..++
T Consensus 39 ~vck~W~~~~~~--~~~--~l~~~~----~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~ 109 (592)
T 3ogk_B 39 LVCRRWFKIDSE--TRE--HVTMAL----CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISN 109 (592)
T ss_dssp TSCHHHHHHHHH--HCC--EEEESC----GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHH
T ss_pred HHhHHHHHhhhc--ccc--EEEEee----ccccChHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHh
Confidence 346689888543 112 223332 223344556778999999999885421 11 343333
Q ss_pred CCCCCCEEeccCCCCCCCCCccCCCC--CCCcEEeCCCCccccccchh-hccCCCCCCeeeCCCccCCCCc-c-HHHHhC
Q 045139 138 SLKNIRHLDLSNAGFTGRVPYQLGNL--TSLQYLDLSFNFDMLSKKLE-WLSQLSFLEYVRLNQVNLGEAT-D-WLQVVS 212 (820)
Q Consensus 138 ~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~-~-~~~~l~ 212 (820)
.+++|++|+|++|.+++..+..++.. .+|++|++++|......... ...++++|++|++++|.+.+.. . ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 78999999999998887777667663 44999999988432222232 2347889999999999876542 1 455667
Q ss_pred CCCCCCEEEcCCCCCCCCCcccccc-ccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCccc---CCCCCCC
Q 045139 213 QLPSLTELQLRGCNLPSVIASSSVS-FSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQ---GPIPDSA 288 (820)
Q Consensus 213 ~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~---g~ip~~~ 288 (820)
.+++|++|++++|.+++.....+.. +.++ ++|++|++++|.+.+ ++..+.... +|++|+++..... +..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~-l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~- 265 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNC-RSLVSVKVGDFEILE-LVGFFKAAA-NLEEFCGGSLNEDIGMPEKYMN- 265 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHC-TTCCEEECSSCBGGG-GHHHHHHCT-TCCEEEECBCCCCTTCTTSSSC-
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhC-CCCcEEeccCccHHH-HHHHHhhhh-HHHhhcccccccccchHHHHHH-
Confidence 7889999999988887443322222 2334 888888888888775 555555554 8888888753322 122233
Q ss_pred CCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcch-hhhhhcccCCcCCccEEEcCCCCCcccCCCCcCc
Q 045139 289 FPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLP-NLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLF 367 (820)
Q Consensus 289 l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l 367 (820)
+..+++|+.|+++++....+|..+..+++|++|++++|.+++... ..+..++ +|+.|+++ +.+
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~-----~L~~L~L~-~~~---------- 329 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP-----NLEVLETR-NVI---------- 329 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT-----TCCEEEEE-GGG----------
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc-----CCCEEecc-Ccc----------
Confidence 566677777777776555666666666677777776666544322 1122222 23333322 111
Q ss_pred CCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCC-----------CcCccccCHHHhhcCCCCCEEeCcC
Q 045139 368 SSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVAS-----------NSLKGMITEAHLSNLSRLTYLDLSH 436 (820)
Q Consensus 368 ~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-----------n~l~~~~~~~~l~~l~~L~~L~Ls~ 436 (820)
..+.++.....+++|++|++++ |.+++.........+++|++|+++.
T Consensus 330 ----------------------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 330 ----------------------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp ----------------------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred ----------------------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence 1112223334456666666662 3443321111233455555555544
Q ss_pred CccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcC----CCcC
Q 045139 437 NSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLS----HNHF 512 (820)
Q Consensus 437 n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls----~n~l 512 (820)
| .+++..+..+...+++|+.|+++ .|.+
T Consensus 388 ~------------------------------------------------~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 388 S------------------------------------------------DITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp S------------------------------------------------CCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred C------------------------------------------------CccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 4 34333333333333456666654 3333
Q ss_pred CCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCc--cccccCcc
Q 045139 513 TGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNL--LSGELPNC 590 (820)
Q Consensus 513 ~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~p~~ 590 (820)
++...+. . ++...... .+|++|++++|. +++..+..
T Consensus 420 ~~~p~~~--~---------------------------------------~~~~~~~~-~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 420 TDLPLDN--G---------------------------------------VRSLLIGC-KKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp SSCCCHH--H---------------------------------------HHHHHHHC-TTCCEEEEECCGGGCCHHHHHH
T ss_pred cCchHHH--H---------------------------------------HHHHHHhC-CCCCEEEEecCCCCccHHHHHH
Confidence 3221100 0 00000000 056666665432 44443333
Q ss_pred cc-cCCCCcEEEcCCCeeee-cCCCCcccccCCcEEeccCCccccc-CCcchhcCCCCCEEECCCCcCccccCcchhcCC
Q 045139 591 SK-NWQKLTVLNLANNKFSG-KIPDSMDFNCMMLSLHLRNNSFIGE-LPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSL 667 (820)
Q Consensus 591 ~~-~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l 667 (820)
+. .+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++.....+++|++|++++|++++.....+...+
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~ 537 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMAR 537 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCC
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhC
Confidence 33 36777777777777765 3344456677777777777777644 344445677888888888887765445555566
Q ss_pred CCccEEEcCcc
Q 045139 668 PDLVVLSLRSN 678 (820)
Q Consensus 668 ~~L~~L~L~~N 678 (820)
+.+....+..+
T Consensus 538 p~l~~~~~~~~ 548 (592)
T 3ogk_B 538 PYWNIELIPSR 548 (592)
T ss_dssp TTEEEEEECCC
T ss_pred CCcEEEEecCc
Confidence 77766666554
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.4e-27 Score=249.87 Aligned_cols=204 Identities=22% Similarity=0.251 Sum_probs=133.3
Q ss_pred cccEEEccCCcccc--ccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCC-cchhcCCCCCEE
Q 045139 572 HFRYLDLSDNLLSG--ELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP-SSVKSFTQLTVL 648 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L 648 (820)
+|++|++++|.++. ..|..+..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|
T Consensus 53 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 131 (306)
T 2z66_A 53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131 (306)
T ss_dssp TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEE
Confidence 55666666666552 22455556666777777777666 345556666677777777776665444 456666777777
Q ss_pred ECCCCcCccccCcchhcCCCCccEEEcCcccccc-cCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcc
Q 045139 649 DLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHG-RVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAM 727 (820)
Q Consensus 649 ~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~ 727 (820)
++++|++.+..|..+. .+++|++|++++|.+++ .+|..+..+++|+.|++++|++++..|..+.+++.|
T Consensus 132 ~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------- 201 (306)
T 2z66_A 132 DISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL--------- 201 (306)
T ss_dssp ECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC---------
T ss_pred ECCCCcCCccchhhcc-cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC---------
Confidence 7777777666665555 56677777777777665 456666677777777777777766556666665555
Q ss_pred cccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCC-C
Q 045139 728 IRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLT-L 805 (820)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~ 805 (820)
+.|+|++|++++..+ .+..+++|+.|++++|++++.+|..+..++ +
T Consensus 202 --------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 202 --------------------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp --------------------------------CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred --------------------------------CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 667777777765555 566667777777777777776666666663 6
Q ss_pred CCeEeCCCCcCcc
Q 045139 806 LNSLDLSKNMLMR 818 (820)
Q Consensus 806 L~~LdLs~N~l~g 818 (820)
|++||+++|+++|
T Consensus 250 L~~L~L~~N~~~~ 262 (306)
T 2z66_A 250 LAFLNLTQNDFAC 262 (306)
T ss_dssp CCEEECTTCCEEC
T ss_pred CCEEEccCCCeec
Confidence 7777777777665
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=9.7e-28 Score=255.80 Aligned_cols=200 Identities=23% Similarity=0.328 Sum_probs=164.6
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhc---------C
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKS---------F 642 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~---------l 642 (820)
+|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..++.+++|++|++++|++.+.+|..+.. +
T Consensus 105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 6778888888877 77777888888888888888887 67777888888888888888777777776654 8
Q ss_pred CCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccc
Q 045139 643 TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANK 722 (820)
Q Consensus 643 ~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~ 722 (820)
++|++|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|++|++++|++.+.+|..+.+++.|
T Consensus 183 ~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L---- 255 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL---- 255 (328)
T ss_dssp TTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC----
T ss_pred CCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC----
Confidence 88888888888888 7888777 68888888888888884 66678888888888888888888888888877777
Q ss_pred cCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCccccc
Q 045139 723 SSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIG 801 (820)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 801 (820)
+.|+|++|++.+.+| .++.+++|++|+|++|++.+.+|+.++
T Consensus 256 -------------------------------------~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 256 -------------------------------------KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp -------------------------------------CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred -------------------------------------CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 788888888888888 888888888888888888888888888
Q ss_pred CCCCCCeEeCCCCcCc
Q 045139 802 GLTLLNSLDLSKNMLM 817 (820)
Q Consensus 802 ~l~~L~~LdLs~N~l~ 817 (820)
++++|+.++++.|.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 8888888888877654
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=6.4e-29 Score=263.48 Aligned_cols=200 Identities=24% Similarity=0.274 Sum_probs=170.7
Q ss_pred cccEEEccCCccccccCccc--ccCCCCcEEEcCCCeeeecCCCCcccc-----cCCcEEeccCCcccccCCcchhcCCC
Q 045139 572 HFRYLDLSDNLLSGELPNCS--KNWQKLTVLNLANNKFSGKIPDSMDFN-----CMMLSLHLRNNSFIGELPSSVKSFTQ 644 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~ 644 (820)
+|++|++++|++++.+|..+ ..+++|++|++++|++++. |..++.+ ++|++|++++|++.+..|..++++++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 78999999999998888876 8899999999999999976 8888887 89999999999999888899999999
Q ss_pred CCEEECCCCcCcccc--Ccch--hcCCCCccEEEcCcccccc--cCC-cccCCCCCCCEEeCcCCCCccccc-hhccccc
Q 045139 645 LTVLDLGHNKISGII--PAWI--GDSLPDLVVLSLRSNNFHG--RVP-VQVCHLQRIQVLDLSQNNISGTVP-QCLNNLT 716 (820)
Q Consensus 645 L~~L~Ls~N~l~~~~--p~~l--~~~l~~L~~L~L~~N~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~ 716 (820)
|++|++++|++.+.+ |..+ . .+++|++|++++|++++ .++ ..+..+++|+.|++++|++++.+| ..+..++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPL-KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTT-SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCEEECCCCCcCcchHHHHHHHhc-cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 999999999988763 3333 4 78999999999999983 222 344678999999999999998775 3444455
Q ss_pred cccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccC
Q 045139 717 AMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGP 795 (820)
Q Consensus 717 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ 795 (820)
.| +.|||++|+++ .+| .+. ++|++|||++|++++.
T Consensus 254 ~L-----------------------------------------~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 254 QL-----------------------------------------NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp TC-----------------------------------------CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC
T ss_pred CC-----------------------------------------CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC
Confidence 55 89999999998 888 666 8999999999999976
Q ss_pred CcccccCCCCCCeEeCCCCcCccc
Q 045139 796 IPSKIGGLTLLNSLDLSKNMLMRA 819 (820)
Q Consensus 796 ip~~l~~l~~L~~LdLs~N~l~g~ 819 (820)
|. +..+++|++||+++|++++.
T Consensus 290 -p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 290 -PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp -CC-TTTSCEEEEEECTTCTTTCC
T ss_pred -hh-HhhCCCCCEEeccCCCCCCC
Confidence 76 89999999999999999874
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.3e-28 Score=260.40 Aligned_cols=279 Identities=19% Similarity=0.195 Sum_probs=201.1
Q ss_pred CCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEec
Q 045139 474 QNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLIL 553 (820)
Q Consensus 474 ~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l 553 (820)
++.....+.+++.++ .+|..+. ++|++|++++|++++..+..+..++.+ +.|++++|.+++..|..+..+.
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~---- 100 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNL-QALVLTSNGINTIEEDSFSSLG---- 100 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTC-CEEECTTSCCCEECTTTTTTCT----
T ss_pred CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCC-CEEECCCCccCccCHhhcCCCC----
Confidence 344445677777775 3454432 478888888888877666556666666 7777777777765555554443
Q ss_pred cCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCC-CCcccccCCcEEeccCC-cc
Q 045139 554 FKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIP-DSMDFNCMMLSLHLRNN-SF 631 (820)
Q Consensus 554 ~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N-~l 631 (820)
+|++|++++|++++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++| .+
T Consensus 101 ------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 101 ------------------SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp ------------------TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred ------------------CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc
Confidence 78888888888885555557888888888888888884333 37788888888888888 46
Q ss_pred cccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchh
Q 045139 632 IGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC 711 (820)
Q Consensus 632 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 711 (820)
.+..+..+.++++|++|++++|++++..|..+. .+++|++|++++|++....+..+..+++|+.|++++|++++..+..
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHh-ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence 666677888888888888888888877787777 6888888888888886433333455788888888888888655544
Q ss_pred ccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCee----cCC-CcccccCCCEEe
Q 045139 712 LNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYG----EIP-EVTSLVGLISLN 786 (820)
Q Consensus 712 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~----~ip-~l~~l~~L~~L~ 786 (820)
+..... .+.++.++|++|.+++ .+| .+..+++|+.|+
T Consensus 242 l~~~~~--------------------------------------~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~ 283 (353)
T 2z80_A 242 LSTGET--------------------------------------NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283 (353)
T ss_dssp -----C--------------------------------------CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred cccccc--------------------------------------cchhhccccccccccCcchhhhHHHHhcccCCCEEE
Confidence 332211 1223667777777765 467 788899999999
Q ss_pred CCCCccccCCccc-ccCCCCCCeEeCCCCcCccc
Q 045139 787 LSKNSLTGPIPSK-IGGLTLLNSLDLSKNMLMRA 819 (820)
Q Consensus 787 Ls~N~l~~~ip~~-l~~l~~L~~LdLs~N~l~g~ 819 (820)
+++|+++ .+|.. |+++++|++|++++|+++|.
T Consensus 284 Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 284 FSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 9999998 56655 58899999999999999875
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=4.1e-29 Score=290.46 Aligned_cols=204 Identities=14% Similarity=0.084 Sum_probs=126.0
Q ss_pred hCCCCCCCEEEcCCCCCCCCCccccccccCCcCC-ccEEECcCCC-CCCchhhhhhccCCCCcEEEccCCcccCC----C
Q 045139 211 VSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRS-LAHLDLSLND-VSNSVYYWLFNSSSSLVYLDLSSNKLQGP----I 284 (820)
Q Consensus 211 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~-L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~----i 284 (820)
...+++|++|+|++|.+++..+ ..+...++. |++|++++|. ++......+...+++|++|++++|.+++. +
T Consensus 108 ~~~~~~L~~L~L~~~~i~~~~~---~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l 184 (592)
T 3ogk_B 108 SNNLRQLKSVHFRRMIVSDLDL---DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL 184 (592)
T ss_dssp HHHCTTCCEEEEESCBCCHHHH---HHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred HhhCCCCCeEEeeccEecHHHH---HHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence 3367777788877776665443 233332234 8888887775 22222222333344888888888877643 1
Q ss_pred CCCCCCCCCCCCEEECCCCCCC-----CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCc-
Q 045139 285 PDSAFPNPTSLSYLDLSNNQLV-----SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLR- 358 (820)
Q Consensus 285 p~~~l~~l~~L~~L~Ls~n~l~-----~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~- 358 (820)
+.. +..+++|++|++++|.++ .++..+.++++|++|++++|.+.+ +|..+..++ +|+.|+++.....
T Consensus 185 ~~~-~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~-----~L~~L~l~~~~~~~ 257 (592)
T 3ogk_B 185 HEL-AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA-----NLEEFCGGSLNEDI 257 (592)
T ss_dssp HHH-HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT-----TCCEEEECBCCCCT
T ss_pred HHH-HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh-----HHHhhccccccccc
Confidence 111 345678888888888776 334456778888888888888776 567777777 7888888753322
Q ss_pred --ccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCc
Q 045139 359 --GSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLS 435 (820)
Q Consensus 359 --~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls 435 (820)
+..+. +..+++|+.|.+++ + ..+.+|..+..+++|++|++++|.+++......+..+++|++|+++
T Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~----------~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 258 GMPEKYMNLVFPRKLCRLGLSY----------M-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TCTTSSSCCCCCTTCCEEEETT----------C-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred chHHHHHHhhccccccccCccc----------c-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 11112 55566666654432 2 1235566677777888888888776654333345677777777777
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2e-26 Score=241.12 Aligned_cols=206 Identities=21% Similarity=0.223 Sum_probs=189.0
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCc-ccccCCcchhcCCCCCEEEC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS-FIGELPSSVKSFTQLTVLDL 650 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L 650 (820)
++++|++++|.+++..+..|..+++|++|++++|++++..|..|+.+++|++|++++|+ +.+..|..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 78999999999998888889999999999999999998889999999999999999998 77777889999999999999
Q ss_pred CCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCccccc
Q 045139 651 GHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRY 730 (820)
Q Consensus 651 s~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~ 730 (820)
++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+.+++.|
T Consensus 113 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------ 179 (285)
T 1ozn_A 113 DRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL------------ 179 (285)
T ss_dssp TTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC------------
T ss_pred CCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc------------
Confidence 99999977777776 79999999999999998777789999999999999999996666678877777
Q ss_pred CCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeE
Q 045139 731 PLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSL 809 (820)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L 809 (820)
+.|++++|++++.+| .+..+++|+.|++++|++++..|..+..+++|++|
T Consensus 180 -----------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 180 -----------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp -----------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred -----------------------------CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 899999999998888 99999999999999999998777889999999999
Q ss_pred eCCCCcCccc
Q 045139 810 DLSKNMLMRA 819 (820)
Q Consensus 810 dLs~N~l~g~ 819 (820)
|+++|++++.
T Consensus 231 ~l~~N~~~c~ 240 (285)
T 1ozn_A 231 RLNDNPWVCD 240 (285)
T ss_dssp ECCSSCEECS
T ss_pred eccCCCccCC
Confidence 9999999864
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3.3e-26 Score=256.07 Aligned_cols=205 Identities=22% Similarity=0.242 Sum_probs=183.4
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+|++|++++|++++..|..|.++++|++|+|++|++++..+..|+.+++|++|++++|++.+..+..|.++++|++|+++
T Consensus 100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179 (452)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC
Confidence 78999999999998888999999999999999999998777789999999999999999998888889999999999999
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
+|+..+.+|......+++|++|++++|++++ +| .+..+++|+.|++++|++++..|..|.+++.|
T Consensus 180 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------- 244 (452)
T 3zyi_A 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL------------- 244 (452)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC-------------
T ss_pred CCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCC-------------
Confidence 9655556765433479999999999999985 44 58889999999999999998889889888877
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD 810 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld 810 (820)
+.|+|++|++++..| .+..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 245 ----------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 245 ----------------------------KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp ----------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred ----------------------------CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence 899999999998888 899999999999999999988888899999999999
Q ss_pred CCCCcCccc
Q 045139 811 LSKNMLMRA 819 (820)
Q Consensus 811 Ls~N~l~g~ 819 (820)
|++|++.+.
T Consensus 297 L~~Np~~Cd 305 (452)
T 3zyi_A 297 LHHNPWNCD 305 (452)
T ss_dssp CCSSCEECS
T ss_pred ccCCCcCCC
Confidence 999998753
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.5e-26 Score=254.89 Aligned_cols=204 Identities=23% Similarity=0.265 Sum_probs=183.1
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|++.+..+..|.++++|++|+++
T Consensus 89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168 (440)
T ss_dssp SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence 88999999999998888899999999999999999997777789999999999999999998888899999999999999
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
+|+..+.++......+++|++|++++|+++ .+| .+..+++|+.|+|++|++++..|..|.+++.|
T Consensus 169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------- 233 (440)
T 3zyj_A 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL------------- 233 (440)
T ss_dssp CCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC-------------
T ss_pred CCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccC-------------
Confidence 965555666543348999999999999998 555 58889999999999999998888888888877
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD 810 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld 810 (820)
+.|+|++|++++..| .+..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 234 ----------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 234 ----------------------------QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp ----------------------------CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE
T ss_pred ----------------------------CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE
Confidence 899999999998888 899999999999999999988888899999999999
Q ss_pred CCCCcCcc
Q 045139 811 LSKNMLMR 818 (820)
Q Consensus 811 Ls~N~l~g 818 (820)
|++|++.+
T Consensus 286 L~~Np~~C 293 (440)
T 3zyj_A 286 LHHNPWNC 293 (440)
T ss_dssp CCSSCEEC
T ss_pred cCCCCccC
Confidence 99999875
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.1e-26 Score=245.99 Aligned_cols=181 Identities=20% Similarity=0.266 Sum_probs=132.8
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCC-CCcccccCCcEEeccCCcccccCCcchhcCCCCCEEEC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIP-DSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDL 650 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 650 (820)
+|++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 79 ~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred ccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 6777777777776 456667777777788887777775544 56777777778888777777777777777777888888
Q ss_pred CCCcCcc-ccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccc
Q 045139 651 GHNKISG-IIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIR 729 (820)
Q Consensus 651 s~N~l~~-~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~ 729 (820)
++|.+++ .+|..+. .+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..++.|
T Consensus 158 ~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------- 225 (306)
T 2z66_A 158 AGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL----------- 225 (306)
T ss_dssp TTCEEGGGEECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC-----------
T ss_pred CCCccccccchhHHh-hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC-----------
Confidence 8777775 4666665 67777888888777777777777777778888888777776555566665555
Q ss_pred cCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-Ccccc-cCCCEEeCCCCccccC
Q 045139 730 YPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSL-VGLISLNLSKNSLTGP 795 (820)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l-~~L~~L~Ls~N~l~~~ 795 (820)
+.||+++|++++.+| .+..+ ++|+.|+|++|.+++.
T Consensus 226 ------------------------------~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 226 ------------------------------QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp ------------------------------CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred ------------------------------CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 777777777777777 67776 3777777777777754
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=249.61 Aligned_cols=290 Identities=21% Similarity=0.205 Sum_probs=189.6
Q ss_pred CCCCcccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCC
Q 045139 72 KKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAG 151 (820)
Q Consensus 72 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~ 151 (820)
...+|.|.|+ |+. ++ +.++ .+|..+. ++|++|++++|.+++. .+..++++++|++|++++|.
T Consensus 26 ~~~~C~~~~~-c~~----------~~---~~l~-~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 26 ASLSCDRNGI-CKG----------SS---GSLN-SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp -CCEECTTSE-EEC----------CS---TTCS-SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSC
T ss_pred cCCCCCCCeE-eeC----------CC---CCcc-ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCc
Confidence 4567899987 642 22 3333 4565554 4899999999999873 44478999999999999999
Q ss_pred CCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCC
Q 045139 152 FTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVI 231 (820)
Q Consensus 152 l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 231 (820)
+++..|..++++++|++|++++| .+++. .+..++++++|++|++++|.+++..
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n-------------------------~l~~~--~~~~~~~l~~L~~L~L~~n~l~~l~ 140 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYN-------------------------YLSNL--SSSWFKPLSSLTFLNLLGNPYKTLG 140 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS-------------------------CCSSC--CHHHHTTCTTCSEEECTTCCCSSSC
T ss_pred cCccCHhhcCCCCCCCEEECCCC-------------------------cCCcC--CHhHhCCCccCCEEECCCCCCcccC
Confidence 99777778888888888888887 33331 1234777888888888888777543
Q ss_pred ccccccccCCcCCccEEECcCCC-CCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcch
Q 045139 232 ASSSVSFSNSSRSLAHLDLSLND-VSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK 310 (820)
Q Consensus 232 ~~~~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~ 310 (820)
+. ..+..+ ++|++|++++|. +++..+..+.... +|++|++++|.+++..|.. ++.+++|++|++++|+++.+|.
T Consensus 141 ~~--~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 215 (353)
T 2z80_A 141 ET--SLFSHL-TKLQILRVGNMDTFTKIQRKDFAGLT-FLEELEIDASDLQSYEPKS-LKSIQNVSHLILHMKQHILLLE 215 (353)
T ss_dssp SS--CSCTTC-TTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSCSTTHHH
T ss_pred ch--hhhccC-CCCcEEECCCCccccccCHHHccCCC-CCCEEECCCCCcCccCHHH-HhccccCCeecCCCCccccchh
Confidence 31 134444 777777777774 4433333444443 7777777777776544544 6666777777777776666655
Q ss_pred h-hhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCc
Q 045139 311 S-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNR 389 (820)
Q Consensus 311 ~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~ 389 (820)
. +..+++|++|++++|++++..+..+.. ....+.++.+++..+.+ +++.
T Consensus 216 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-------------------------~~~~~~l~~l~L~~~~l-----~~~~ 265 (353)
T 2z80_A 216 IFVDVTSSVECLELRDTDLDTFHFSELST-------------------------GETNSLIKKFTFRNVKI-----TDES 265 (353)
T ss_dssp HHHHHTTTEEEEEEESCBCTTCCCC-------------------------------CCCCCCEEEEESCBC-----CHHH
T ss_pred hhhhhcccccEEECCCCcccccccccccc-------------------------ccccchhhccccccccc-----cCcc
Confidence 4 334566666666666666543332221 11233444444332221 2233
Q ss_pred ccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCcccccc
Q 045139 390 FTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNF 443 (820)
Q Consensus 390 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 443 (820)
+. .+|..+..+++|+.|++++|+++. +|...|..+++|++|++++|++.+..
T Consensus 266 l~-~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 266 LF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HH-HHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hh-hhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 32 467788999999999999999985 66656789999999999999987643
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.4e-26 Score=239.46 Aligned_cols=267 Identities=20% Similarity=0.174 Sum_probs=199.3
Q ss_pred cEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcc
Q 045139 478 SELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNM 557 (820)
Q Consensus 478 ~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~ 557 (820)
+.++.+++.++. +|..+ .+++++|++++|.+++..+..+..++.+ +.|++++|.+++..|..+..+.
T Consensus 14 ~~~~c~~~~l~~-ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~-------- 80 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI---PAASQRIFLHGNRISHVPAASFRACRNL-TILWLHSNVLARIDAAAFTGLA-------- 80 (285)
T ss_dssp CEEECCSSCCSS-CCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCT--------
T ss_pred eEEEcCcCCccc-CCcCC---CCCceEEEeeCCcCCccCHHHcccCCCC-CEEECCCCccceeCHhhcCCcc--------
Confidence 455666655543 34322 2467777777777776666555566666 6667776666665555444443
Q ss_pred cccccchhhccccccccEEEccCCc-cccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCC
Q 045139 558 FSGSLSFLCQISDEHFRYLDLSDNL-LSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP 636 (820)
Q Consensus 558 ~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 636 (820)
+|++|++++|. +++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+
T Consensus 81 --------------~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 81 --------------LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp --------------TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred --------------CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 78889998887 776668888889999999999999988778888889999999999999987777
Q ss_pred cchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccc
Q 045139 637 SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLT 716 (820)
Q Consensus 637 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 716 (820)
..+..+++|++|++++|++++..+..+. .+++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred hHhccCCCccEEECCCCcccccCHHHhc-CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 7788899999999999999855555565 688999999999999888888899999999999999999876666777777
Q ss_pred cccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCC
Q 045139 717 AMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPI 796 (820)
Q Consensus 717 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~i 796 (820)
.| +.|++++|+++...+.......++.+..+.|.+....
T Consensus 226 ~L-----------------------------------------~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 226 AL-----------------------------------------QYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp TC-----------------------------------------CEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred cc-----------------------------------------CEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence 76 7899999998865553233355666778888888888
Q ss_pred cccccC--CCCCCeEeCCC
Q 045139 797 PSKIGG--LTLLNSLDLSK 813 (820)
Q Consensus 797 p~~l~~--l~~L~~LdLs~ 813 (820)
|+.+.+ +..++..++++
T Consensus 265 p~~l~g~~l~~l~~~~l~~ 283 (285)
T 1ozn_A 265 PQRLAGRDLKRLAANDLQG 283 (285)
T ss_dssp SGGGTTCBGGGSCGGGSCC
T ss_pred chHhCCcChhhcCHHHhcc
Confidence 887754 34444444443
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=5.2e-28 Score=256.46 Aligned_cols=272 Identities=22% Similarity=0.230 Sum_probs=208.8
Q ss_pred CCCCCCCCCCCCCcccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCcccc-----
Q 045139 63 LSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIG----- 137 (820)
Q Consensus 63 ~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~----- 137 (820)
..+|. ....|+.|..+.......+++.+++++ +.+ .+|..+... |++|+|++|.+....+|..+.
T Consensus 21 ~~~~~---~~~~c~~~~~~~~~~~~~~L~~l~l~~---n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~ 90 (312)
T 1wwl_A 21 KPDWS---SAFNCLGAADVELYGGGRSLEYLLKRV---DTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALR 90 (312)
T ss_dssp SCCGG---GGGGSSSCSEEEEEEEEEECTTHHHHC---CTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHH
T ss_pred ccchH---HHhhhhccccEEEEccCCCceeEeecc---ccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHH
Confidence 45786 356777777765432234577777877 666 778777655 999999999996545887776
Q ss_pred --CCCCCCEEeccCCCCCCCCCccC--CCCCCCcEEeCCCCccccccchhhccCC-----CCCCeeeCCCccCCCCccHH
Q 045139 138 --SLKNIRHLDLSNAGFTGRVPYQL--GNLTSLQYLDLSFNFDMLSKKLEWLSQL-----SFLEYVRLNQVNLGEATDWL 208 (820)
Q Consensus 138 --~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~ 208 (820)
++++|++|+|++|.+++.+|..+ +.+++|++|++++| .+... +..++.+ ++|++|++++|.+.+. .+
T Consensus 91 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~--~~ 166 (312)
T 1wwl_A 91 VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF--SC 166 (312)
T ss_dssp HHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC--CT
T ss_pred hcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc--hH
Confidence 79999999999999999999887 89999999999999 22222 4555555 8999999999998774 34
Q ss_pred HHhCCCCCCCEEEcCCCCCCCCCccccccc--cCCcCCccEEECcCCCCCC--chhhhhhccCCCCcEEEccCCcccCCC
Q 045139 209 QVVSQLPSLTELQLRGCNLPSVIASSSVSF--SNSSRSLAHLDLSLNDVSN--SVYYWLFNSSSSLVYLDLSSNKLQGPI 284 (820)
Q Consensus 209 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~~~~~L~~L~Ls~n~l~~--~~~~~~~~~~~~L~~L~Ls~n~l~g~i 284 (820)
..++++++|++|++++|.+.+..+.. ..+ ..+ ++|++|++++|.+++ .++..++...++|++|++++|.+++.+
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLI-SALCPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHH-HHSCTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHH-HHHHhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 67889999999999999887642200 122 555 899999999999984 445555555559999999999999777
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcc
Q 045139 285 PDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRG 359 (820)
Q Consensus 285 p~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~ 359 (820)
|...+..+++|++|++++|+++.+|..+. ++|++|++++|++++. |. +..++ +|++|++++|++++
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~-----~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP-----QVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC-----EEEEEECTTCTTTC
T ss_pred chhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCC-----CCCEEeccCCCCCC
Confidence 65557778899999999999998888766 7888888888888876 44 66666 78888888887764
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=9.2e-27 Score=247.48 Aligned_cols=261 Identities=18% Similarity=0.220 Sum_probs=176.7
Q ss_pred CcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcC
Q 045139 370 LKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVP 449 (820)
Q Consensus 370 L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 449 (820)
++++.+.++.++..+++.+.+.......+..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..
T Consensus 2 i~~l~~~g~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~------ 74 (317)
T 3o53_A 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETL------ 74 (317)
T ss_dssp CCEEEEETTEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH-HHTTCTTCCEEECTTSCCEEEE------
T ss_pred cccccCCcCceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH-HhhCCCcCCEEECCCCcCCcch------
Confidence 345555566666677777777766666677788899999999999875444 7888999999999998875321
Q ss_pred ccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCc
Q 045139 450 SFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPE 529 (820)
Q Consensus 450 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~ 529 (820)
+ +..+++|++|++++|.+++..+ .++|++|++++|++++..+.
T Consensus 75 ------------------~--~~~l~~L~~L~Ls~n~l~~l~~------~~~L~~L~l~~n~l~~~~~~----------- 117 (317)
T 3o53_A 75 ------------------D--LESLSTLRTLDLNNNYVQELLV------GPSIETLHAANNNISRVSCS----------- 117 (317)
T ss_dssp ------------------E--ETTCTTCCEEECCSSEEEEEEE------CTTCCEEECCSSCCSEEEEC-----------
T ss_pred ------------------h--hhhcCCCCEEECcCCccccccC------CCCcCEEECCCCccCCcCcc-----------
Confidence 1 4455666666666666653221 14566666666655432221
Q ss_pred eeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeee
Q 045139 530 IDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSG 609 (820)
Q Consensus 530 l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 609 (820)
.+. +|++|++++|++++..+..+..+++|++|++++|++++
T Consensus 118 --------------~~~-------------------------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 118 --------------RGQ-------------------------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp --------------CCS-------------------------SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred --------------ccC-------------------------CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 000 56777777777776666677777777777777777777
Q ss_pred cCCCCcc-cccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCccc
Q 045139 610 KIPDSMD-FNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV 688 (820)
Q Consensus 610 ~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l 688 (820)
..+..+. .+++|++|++++|.+++. | ....+++|++|++++|++++ +|..+. .+++|++|++++|+++ .+|..+
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~-~l~~L~~L~L~~N~l~-~l~~~~ 233 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQ-SAAGVTWISLRNNKLV-LIEKAL 233 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGG-GGTTCSEEECTTSCCC-EECTTC
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhc-ccCcccEEECcCCccc-chhhHh
Confidence 6666553 567777777777777755 2 23347777777777777774 444455 5777777777777777 466677
Q ss_pred CCCCCCCEEeCcCCCCc-cccchhccccccc
Q 045139 689 CHLQRIQVLDLSQNNIS-GTVPQCLNNLTAM 718 (820)
Q Consensus 689 ~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L 718 (820)
..+++|+.|++++|++. +.+|..+..++.|
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 77777777777777777 5666666666665
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.3e-27 Score=250.96 Aligned_cols=188 Identities=21% Similarity=0.175 Sum_probs=108.5
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+|++|++++|++++.. ..++|++|++++|++++..+.. +++|++|++++|++++..+..+..+++|++|+++
T Consensus 81 ~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 81 TLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp TCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred CCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 5566666666655321 2256666666666665544332 3456666666666666555566666666666666
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
+|++++..|..+...+++|++|++++|++++. |. ...+++|++|++++|++++ +|..+..++.|
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L------------- 216 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGV------------- 216 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTC-------------
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcc-------------
Confidence 66666555555433456666666666666643 22 2235666666666666663 33335554444
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccc-cCCcccccCCCCCCeE
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT-GPIPSKIGGLTLLNSL 809 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L 809 (820)
+.|||++|+++ .+| .+..+++|+.|++++|.++ +.+|..+..+++|+.+
T Consensus 217 ----------------------------~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 217 ----------------------------TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp ----------------------------SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred ----------------------------cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 56666666666 345 5666666666666666666 5555666666666666
Q ss_pred eCC
Q 045139 810 DLS 812 (820)
Q Consensus 810 dLs 812 (820)
+++
T Consensus 268 ~l~ 270 (317)
T 3o53_A 268 AKQ 270 (317)
T ss_dssp HHH
T ss_pred ECC
Confidence 555
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=5.8e-25 Score=228.90 Aligned_cols=210 Identities=23% Similarity=0.168 Sum_probs=186.8
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
++++|++++|++++..+..+.++++|++|++++|++++..+..|+.+++|++|++++|++++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 78999999999998877799999999999999999998888899999999999999999999988999999999999999
Q ss_pred CCcCccccCcchhcCCCCccEEEcCccccccc-CCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCccccc
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGR-VPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRY 730 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~ 730 (820)
+|++++..+..+. .+++|++|++++|++++. +|..+..+++|+.|++++|++++..+..+..+..|+.+
T Consensus 109 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l--------- 178 (276)
T 2z62_A 109 ETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL--------- 178 (276)
T ss_dssp TSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC---------
T ss_pred CCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc---------
Confidence 9999976666676 799999999999999874 69999999999999999999998777788777766211
Q ss_pred CCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139 731 PLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD 810 (820)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld 810 (820)
...|++++|++++..+......+|+.|++++|++++..+..|+++++|++|+
T Consensus 179 ----------------------------~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 179 ----------------------------NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp ----------------------------CEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred ----------------------------ceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEE
Confidence 0279999999996666655666899999999999987777789999999999
Q ss_pred CCCCcCccc
Q 045139 811 LSKNMLMRA 819 (820)
Q Consensus 811 Ls~N~l~g~ 819 (820)
+++|+++|.
T Consensus 231 l~~N~~~c~ 239 (276)
T 2z62_A 231 LHTNPWDCS 239 (276)
T ss_dssp CCSSCBCCC
T ss_pred ccCCccccc
Confidence 999999875
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.3e-25 Score=255.35 Aligned_cols=284 Identities=26% Similarity=0.282 Sum_probs=167.6
Q ss_pred CCCCCCCCCCCCCcccCceEe------cCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccc
Q 045139 63 LSSWGNEDDKKDCCKWRGVSC------SNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFI 136 (820)
Q Consensus 63 ~~~W~~~~~~~~~c~w~gv~c------~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i 136 (820)
.++|. .+.+||.|.|..| ......++.+++++ +.++ .+|..+. ++|++|++++|.++. +|.
T Consensus 12 w~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~---n~L~-~lp~~l~--~~L~~L~L~~N~l~~--lp~-- 78 (622)
T 3g06_A 12 WSAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGE---SGLT-TLPDCLP--AHITTLVIPDNNLTS--LPA-- 78 (622)
T ss_dssp HHHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCS---SCCS-CCCSCCC--TTCSEEEECSCCCSC--CCC--
T ss_pred HHHHH---hcCCcchhccccccCcccccccCCCCcEEEecC---CCcC-ccChhhC--CCCcEEEecCCCCCC--CCC--
Confidence 45675 3667999977432 11123478888888 7776 6777665 789999999998875 676
Q ss_pred cCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCC
Q 045139 137 GSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPS 216 (820)
Q Consensus 137 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~ 216 (820)
.+++|++|+|++|.++ .+|. .+++|++|++++|. + ...+. .+++|++|++++|.+...+. .+++
T Consensus 79 -~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~-l-~~l~~---~l~~L~~L~L~~N~l~~lp~------~l~~ 142 (622)
T 3g06_A 79 -LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNP-L-THLPA---LPSGLCKLWIFGNQLTSLPV------LPPG 142 (622)
T ss_dssp -CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCC-C-CCCCC---CCTTCCEEECCSSCCSCCCC------CCTT
T ss_pred -cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCc-C-CCCCC---CCCCcCEEECCCCCCCcCCC------CCCC
Confidence 5788999999999888 5665 67888888888882 1 11111 45667777777776665322 2366
Q ss_pred CCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCC
Q 045139 217 LTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLS 296 (820)
Q Consensus 217 L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~ 296 (820)
|++|++++|.+++... ..++|+.|++++|.+++ +| ...++|++|++++|.++ .+|.. +++|+
T Consensus 143 L~~L~Ls~N~l~~l~~--------~~~~L~~L~L~~N~l~~-l~----~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~ 204 (622)
T 3g06_A 143 LQELSVSDNQLASLPA--------LPSELCKLWAYNNQLTS-LP----MLPSGLQELSVSDNQLA-SLPTL----PSELY 204 (622)
T ss_dssp CCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCS-CCCCC----CTTCC
T ss_pred CCEEECcCCcCCCcCC--------ccCCCCEEECCCCCCCC-Cc----ccCCCCcEEECCCCCCC-CCCCc----cchhh
Confidence 6666666666655321 11556666666666654 33 22236666666666666 34432 35566
Q ss_pred EEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecC
Q 045139 297 YLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLY 376 (820)
Q Consensus 297 ~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~ 376 (820)
.|++++|.++.+|.. +++|++|++++|++++. | ..++ +|+.|++++|.++. +|. .+++|+.|++
T Consensus 205 ~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~l-p---~~l~-----~L~~L~Ls~N~L~~-lp~--~~~~L~~L~L- 268 (622)
T 3g06_A 205 KLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSL-P---VLPS-----ELKELMVSGNRLTS-LPM--LPSGLLSLSV- 268 (622)
T ss_dssp EEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC-C---CCCT-----TCCEEECCSSCCSC-CCC--CCTTCCEEEC-
T ss_pred EEECcCCcccccCCC---CCCCCEEEccCCccCcC-C---CCCC-----cCcEEECCCCCCCc-CCc--ccccCcEEeC-
Confidence 666666666655542 35566666666666552 2 1122 56666666665552 332 3344443332
Q ss_pred CCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccC
Q 045139 377 DNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMIT 419 (820)
Q Consensus 377 ~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 419 (820)
++|.++ .+|..+.++++|+.|++++|.+++.++
T Consensus 269 ---------s~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 269 ---------YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp ---------CSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred ---------CCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 333333 345555555555555555555555433
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=5.9e-28 Score=280.86 Aligned_cols=213 Identities=16% Similarity=0.167 Sum_probs=104.9
Q ss_pred CCCcccCceEecCCCCcEEEEEcCCCCCCCCccccc-ccccCCCCCCEEECcCCCCCCc-c-cCc------------ccc
Q 045139 73 KDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNIS-SSLIGLQHLNYLNMKYNDFGGK-Q-IPA------------FIG 137 (820)
Q Consensus 73 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~-~~l~~l~~L~~L~Ls~n~l~~~-~-~p~------------~i~ 137 (820)
.-|++|.++... ..+.+++.. ..+..| ..+.++++|++|+++++..... . .|. ...
T Consensus 32 ~vck~W~~~~~~----~~~~l~~~~-----~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~ 102 (594)
T 2p1m_B 32 LVCKSWYEIERW----CRRKVFIGN-----CYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSS 102 (594)
T ss_dssp TSCHHHHHHHHH----HCCEEEESS-----TTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHH
T ss_pred HHHHHHHHhhhh----hceEEeecc-----ccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHH
Confidence 346788887321 234555544 122222 3567889999999998753211 0 111 123
Q ss_pred CCCCCCEEeccCCCCCCCCCccCC-CCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCC
Q 045139 138 SLKNIRHLDLSNAGFTGRVPYQLG-NLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPS 216 (820)
Q Consensus 138 ~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~ 216 (820)
.+++|++|+|++|.+++..+..+. .+++|++|++++|....... ++..+.++++
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~-------------------------l~~~~~~~~~ 157 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG-------------------------LAAIAATCRN 157 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHH-------------------------HHHHHHHCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHH-------------------------HHHHHHhCCC
Confidence 567788888888777766555554 57777777777662222111 2222334444
Q ss_pred CCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCC--CCCchhhhhhccCCCCcEEEccCC-cccCCCCCCCCCCCC
Q 045139 217 LTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLND--VSNSVYYWLFNSSSSLVYLDLSSN-KLQGPIPDSAFPNPT 293 (820)
Q Consensus 217 L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~L~~L~Ls~n-~l~g~ip~~~l~~l~ 293 (820)
|++|++++|.+++..+..+..+...+++|++|++++|. ++......+....++|++|++++| .+. .+|.. +..++
T Consensus 158 L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~-~~~~~ 235 (594)
T 2p1m_B 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATL-LQRAP 235 (594)
T ss_dssp CCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHH-HHHCT
T ss_pred CCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHH-HhcCC
Confidence 55555554444433322222222222455555555553 221222222222335566666555 222 23322 34445
Q ss_pred CCCEEECCCCC-------CCCcchhhhccCCCcEE
Q 045139 294 SLSYLDLSNNQ-------LVSVPKSFRNLCRLRAL 321 (820)
Q Consensus 294 ~L~~L~Ls~n~-------l~~ip~~l~~l~~L~~L 321 (820)
+|++|+++.+. +..++..+.++++|+.+
T Consensus 236 ~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~L 270 (594)
T 2p1m_B 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270 (594)
T ss_dssp TCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEE
T ss_pred cceEcccccccCccchhhHHHHHHHHhcCCCcccc
Confidence 55555543332 23444456666666666
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.6e-24 Score=242.46 Aligned_cols=246 Identities=22% Similarity=0.221 Sum_probs=197.6
Q ss_pred ccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCc
Q 045139 477 FSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKN 556 (820)
Q Consensus 477 L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n 556 (820)
...++.++..++ .+|..+ .+++++|++++|++++..|..+..++.+ +.|++++|.+++..|..+..+.
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L-~~L~Ls~n~i~~~~~~~~~~l~------- 123 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHL-EVLQLGRNSIRQIEVGAFNGLA------- 123 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCT-------
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCC-CEEECCCCccCCcChhhccCcc-------
Confidence 345666666654 345433 2477888888888877777767777777 7778887777766665555544
Q ss_pred ccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCc-ccccC
Q 045139 557 MFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS-FIGEL 635 (820)
Q Consensus 557 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~ 635 (820)
+|++|++++|++++..+..|..+++|++|++++|++.+..+..|..+++|++|++++|. +....
T Consensus 124 ---------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 124 ---------------SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp ---------------TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred ---------------cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 88999999999997777778999999999999999998777789999999999999854 44444
Q ss_pred CcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcccc
Q 045139 636 PSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNL 715 (820)
Q Consensus 636 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 715 (820)
+..+.++++|++|++++|+++ .+|. +. .+++|++|+|++|++++..|..|..+++|+.|++++|++++..|..|.++
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~-~~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIK-DMPN-LT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCS-SCCC-CT-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhccCCCCCCEEECCCCccc-cccc-cc-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 457889999999999999998 4564 44 68999999999999998889999999999999999999998888888887
Q ss_pred ccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccc
Q 045139 716 TAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT 793 (820)
Q Consensus 716 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~ 793 (820)
++| +.|||++|++++..+ .+..+++|+.|+|++|.+.
T Consensus 266 ~~L-----------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 266 ASL-----------------------------------------VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTC-----------------------------------------CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCC-----------------------------------------CEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 777 889999999986555 6788999999999999765
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=242.50 Aligned_cols=246 Identities=21% Similarity=0.172 Sum_probs=191.2
Q ss_pred ccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCc
Q 045139 477 FSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKN 556 (820)
Q Consensus 477 L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n 556 (820)
...++.++..++ .+|..+. ++++.|++++|++++..+..+..++.+ +.|++++|.+++..+..+..+.
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L-~~L~Ls~n~i~~i~~~~~~~l~------- 112 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHL-EILQLSRNHIRTIEIGAFNGLA------- 112 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSC-CEEECCSSCCCEECGGGGTTCS-------
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCC-CEEECCCCcCCccChhhccCCc-------
Confidence 345566665554 3444332 467777777777776666666666666 6777777766654443333333
Q ss_pred ccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCc-ccccC
Q 045139 557 MFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS-FIGEL 635 (820)
Q Consensus 557 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~ 635 (820)
+|++|++++|++++..+..|..+++|++|++++|++.+..+..|..+++|++|++++|. +....
T Consensus 113 ---------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 113 ---------------NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp ---------------SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred ---------------cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 78999999999987777788999999999999999988777889999999999999854 44444
Q ss_pred CcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcccc
Q 045139 636 PSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNL 715 (820)
Q Consensus 636 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 715 (820)
+..|.++++|++|++++|+++ .+|. +. .+++|++|+|++|++++..|..|..+++|+.|++++|++++..|..|.++
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~-~~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLR-EIPN-LT-PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCS-SCCC-CT-TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred cchhhcccccCeecCCCCcCc-cccc-cC-CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 557888999999999999998 6674 44 68899999999999998888999999999999999999998888888887
Q ss_pred ccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccc
Q 045139 716 TAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT 793 (820)
Q Consensus 716 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~ 793 (820)
++| +.|||++|++++..+ .+..+++|+.|+|++|.+.
T Consensus 255 ~~L-----------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 255 QSL-----------------------------------------VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTC-----------------------------------------CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCC-----------------------------------------CEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 777 889999999986555 6788999999999999764
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=6.2e-24 Score=243.45 Aligned_cols=258 Identities=24% Similarity=0.376 Sum_probs=145.3
Q ss_pred cceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceec
Q 045139 453 LNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDL 532 (820)
Q Consensus 453 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~l 532 (820)
++.++++++.+. .+|..+. ++|+.|++++|.++ .+|. .+++|++|++++|++++. |. .++.+ +.|++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L-~~L~L 108 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGL-LELSI 108 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC---CCTTC-CEEEE
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCC-CEEEC
Confidence 455555555554 3343332 45555555555554 2333 124555555555555432 22 22333 44555
Q ss_pred cCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCC
Q 045139 533 SANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIP 612 (820)
Q Consensus 533 s~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 612 (820)
++|.+++ +|..+. +|+.|++++|++++ +|.. +++|++|++++|++++ +|
T Consensus 109 s~N~l~~-l~~~l~-------------------------~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~ 157 (622)
T 3g06_A 109 FSNPLTH-LPALPS-------------------------GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LP 157 (622)
T ss_dssp CSCCCCC-CCCCCT-------------------------TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CC
T ss_pred cCCcCCC-CCCCCC-------------------------CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cC
Confidence 5554443 222222 56667777776663 4432 3667777777776663 33
Q ss_pred CCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCC
Q 045139 613 DSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQ 692 (820)
Q Consensus 613 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 692 (820)
. .+++|+.|++++|.+++ +| ..+++|+.|++++|+++ .+|.. +++|+.|++++|.++ .+|.. ++
T Consensus 158 ~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~-~l~~~---~~ 221 (622)
T 3g06_A 158 A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PS 221 (622)
T ss_dssp C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-SCCCC---CT
T ss_pred C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCCc----cchhhEEECcCCccc-ccCCC---CC
Confidence 3 23556677777777664 44 34566777777777766 34432 456677777777766 34432 35
Q ss_pred CCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeec
Q 045139 693 RIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGE 772 (820)
Q Consensus 693 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ 772 (820)
+|+.|++++|++++ +| ..+++| +.|+|++|+|+ .
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L-----------------------------------------~~L~Ls~N~L~-~ 255 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSEL-----------------------------------------KELMVSGNRLT-S 255 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTC-----------------------------------------CEEECCSSCCS-C
T ss_pred CCCEEEccCCccCc-CC---CCCCcC-----------------------------------------cEEECCCCCCC-c
Confidence 67777777776663 44 122223 66777777776 4
Q ss_pred CCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCccc
Q 045139 773 IPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMRA 819 (820)
Q Consensus 773 ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g~ 819 (820)
+|. .+++|+.|+|++|+|+ .+|..|.++++|+.|||++|+++|.
T Consensus 256 lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 256 LPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred CCc--ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence 554 4566777777777776 5666677777777777777777653
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=6.1e-24 Score=220.16 Aligned_cols=203 Identities=22% Similarity=0.235 Sum_probs=177.7
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
..+.+++++++++ .+|..+. +++++|++++|++++..+..|+.+++|++|++++|++++..+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 5789999999998 5776554 689999999999998777799999999999999999997777778999999999999
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
+|++++..+..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|
T Consensus 94 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------- 159 (270)
T 2o6q_A 94 DNKLQALPIGVFD-QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL------------- 159 (270)
T ss_dssp SSCCCCCCTTTTT-TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCcCCcCCHhHcc-cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc-------------
Confidence 9999955555555 79999999999999998888889999999999999999996666667777777
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD 810 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld 810 (820)
+.|+|++|++++..+ .+..+++|++|++++|++++..+..|..+++|+.|+
T Consensus 160 ----------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 160 ----------------------------KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp ----------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ----------------------------ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEE
Confidence 899999999996666 688999999999999999987777799999999999
Q ss_pred CCCCcCccc
Q 045139 811 LSKNMLMRA 819 (820)
Q Consensus 811 Ls~N~l~g~ 819 (820)
+++|++.+.
T Consensus 212 l~~N~~~c~ 220 (270)
T 2o6q_A 212 LQENPWDCT 220 (270)
T ss_dssp CCSSCBCCS
T ss_pred ecCCCeeCC
Confidence 999998763
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=5.7e-27 Score=272.55 Aligned_cols=389 Identities=14% Similarity=0.087 Sum_probs=206.0
Q ss_pred hCCCCCCCEEEcCCCCCCCCCcccccccc-CCcCCccEEECcCC-CCCCchhhhhhccCCCCcEEEccCCcccCCCCC--
Q 045139 211 VSQLPSLTELQLRGCNLPSVIASSSVSFS-NSSRSLAHLDLSLN-DVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPD-- 286 (820)
Q Consensus 211 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~-- 286 (820)
...+++|++|++++|.+++..+ ..+. .+ ++|++|++++| .+++.....+...+++|++|++++|.+++..+.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~---~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCL---ELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHH---HHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred HHhCCCCCeEEeeCcEEcHHHH---HHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 3467778888888777665544 3343 33 78888888877 454433334443344888888888887643321
Q ss_pred -CCCCCCCCCCEEECCCCC--CC--CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCC----
Q 045139 287 -SAFPNPTSLSYLDLSNNQ--LV--SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNML---- 357 (820)
Q Consensus 287 -~~l~~l~~L~~L~Ls~n~--l~--~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l---- 357 (820)
.....+++|++|++++|. ++ .++..+..+++|++|++++|...+.++..+..++ +|+.|+++.+..
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~-----~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP-----QLEELGTGGYTAEVRP 251 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT-----TCSEEECSBCCCCCCH
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC-----cceEcccccccCccch
Confidence 113366788888888876 32 2233345668888888887733233666666666 777777654431
Q ss_pred ---cccCCCCcCcCCCcEEe-cCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEe
Q 045139 358 ---RGSLPDITLFSSLKELH-LYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLD 433 (820)
Q Consensus 358 ---~~~~p~~~~l~~L~~L~-l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 433 (820)
.+..+.+..+++|+.|. +. .. ..+.++..+..+++|+.|++++|.+++......+..+++|++|+
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~----------~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~ 320 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFW----------DA-VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW 320 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCB----------TC-CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred hhHHHHHHHHhcCCCcccccCCc----------cc-chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEe
Confidence 11111133344444331 11 00 01122223333444444544444443322221233444444444
Q ss_pred CcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCC
Q 045139 434 LSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFT 513 (820)
Q Consensus 434 Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~ 513 (820)
+++| +.+.....+...+++|++|+++++.-.
T Consensus 321 l~~~-------------------------------------------------~~~~~l~~l~~~~~~L~~L~L~~~~~~ 351 (594)
T 2p1m_B 321 VLDY-------------------------------------------------IEDAGLEVLASTCKDLRELRVFPSEPF 351 (594)
T ss_dssp EEGG-------------------------------------------------GHHHHHHHHHHHCTTCCEEEEECSCTT
T ss_pred CcCc-------------------------------------------------cCHHHHHHHHHhCCCCCEEEEecCccc
Confidence 4443 221111112222345555555332100
Q ss_pred CCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccc-
Q 045139 514 GMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSK- 592 (820)
Q Consensus 514 ~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~- 592 (820)
|. ...+.+++. .+..+.... .+|+.|+++.|.+++..+..+.
T Consensus 352 g~----------------~~~~~l~~~--------------------~l~~l~~~~-~~L~~L~~~~~~l~~~~~~~l~~ 394 (594)
T 2p1m_B 352 VM----------------EPNVALTEQ--------------------GLVSVSMGC-PKLESVLYFCRQMTNAALITIAR 394 (594)
T ss_dssp CS----------------SCSSCCCHH--------------------HHHHHHHHC-TTCCEEEEEESCCCHHHHHHHHH
T ss_pred cc----------------ccCCCCCHH--------------------HHHHHHHhc-hhHHHHHHhcCCcCHHHHHHHHh
Confidence 00 000000000 000000000 1566666666666655444443
Q ss_pred cCCCCcEEEcC--C----Ceeeec-----CCCCcccccCCcEEeccCCcccccCCcchhc-CCCCCEEECCCCcCccccC
Q 045139 593 NWQKLTVLNLA--N----NKFSGK-----IPDSMDFNCMMLSLHLRNNSFIGELPSSVKS-FTQLTVLDLGHNKISGIIP 660 (820)
Q Consensus 593 ~l~~L~~L~Ls--~----N~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p 660 (820)
.+++|++|+++ + +++++. ++..+..+++|++|++++ .+++..+..+.. +++|++|++++|.+++..+
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 46777777777 3 344421 112255677888888866 666555555555 7888888888888876666
Q ss_pred cchhcCCCCccEEEcCcccccccCCc-ccCCCCCCCEEeCcCCCCcc
Q 045139 661 AWIGDSLPDLVVLSLRSNNFHGRVPV-QVCHLQRIQVLDLSQNNISG 706 (820)
Q Consensus 661 ~~l~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~ 706 (820)
..+...+++|++|++++|++++..+. .+..+++|+.|++++|+++.
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 55533678888888888888654333 34457888888888888753
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3e-25 Score=249.60 Aligned_cols=188 Identities=21% Similarity=0.173 Sum_probs=135.6
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+|++|++++|.+++.. ..++|++|++++|.+++..+.. +++|+.|++++|.+++..|..++.+++|++|+++
T Consensus 81 ~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 81 TLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp TCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred CCCEEEecCCcCCCCC-----CCCCcCEEECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence 6777777777776432 2267778888888777655543 4677788888888887777777778888888888
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
+|.+++.+|..+...+++|++|+|++|.+++..+ ...+++|+.|+|++|++++ +|..+..++.|
T Consensus 153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L------------- 216 (487)
T 3oja_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGV------------- 216 (487)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTC-------------
T ss_pred CCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCc-------------
Confidence 8888877777665457788888888888776522 3357788888888888875 44446666655
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccc-cCCcccccCCCCCCeE
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT-GPIPSKIGGLTLLNSL 809 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L 809 (820)
+.|||++|++++ +| .++.+++|+.|++++|.+. +.+|..+..++.|+.+
T Consensus 217 ----------------------------~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 217 ----------------------------TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp ----------------------------SEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred ----------------------------cEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 778888888874 55 7777788888888888877 6667777777777777
Q ss_pred eCC
Q 045139 810 DLS 812 (820)
Q Consensus 810 dLs 812 (820)
+++
T Consensus 268 ~~~ 270 (487)
T 3oja_A 268 AKQ 270 (487)
T ss_dssp HHH
T ss_pred ecc
Confidence 664
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.2e-24 Score=244.53 Aligned_cols=234 Identities=18% Similarity=0.217 Sum_probs=173.7
Q ss_pred cCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCcc
Q 045139 399 GQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFS 478 (820)
Q Consensus 399 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 478 (820)
..+++|+.|++++|.+++..|. .|..+++|++|++++|.+++..+ +..+++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--------------------------l~~l~~L~ 83 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD--------------------------LESLSTLR 83 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEE--------------------------CTTCTTCC
T ss_pred ccCCCccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcc--------------------------cccCCCCC
Confidence 3444788888888888775444 67788888888888887754221 44556666
Q ss_pred EEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCccc
Q 045139 479 ELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMF 558 (820)
Q Consensus 479 ~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~ 558 (820)
+|++++|.+++..+. ++|+.|++++|.+++..+.. +.
T Consensus 84 ~L~Ls~N~l~~l~~~------~~L~~L~L~~N~l~~~~~~~-------------------------l~------------ 120 (487)
T 3oja_A 84 TLDLNNNYVQELLVG------PSIETLHAANNNISRVSCSR-------------------------GQ------------ 120 (487)
T ss_dssp EEECCSSEEEEEEEC------TTCCEEECCSSCCCCEEECC-------------------------CS------------
T ss_pred EEEecCCcCCCCCCC------CCcCEEECcCCcCCCCCccc-------------------------cC------------
Confidence 666666666543221 46777777777665433220 00
Q ss_pred ccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcc-cccCCcEEeccCCcccccCCc
Q 045139 559 SGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMD-FNCMMLSLHLRNNSFIGELPS 637 (820)
Q Consensus 559 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~ 637 (820)
+|+.|++++|.+++..|..++.+++|++|++++|++++.+|..+. .+++|++|+|++|.+++..+
T Consensus 121 -------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~- 186 (487)
T 3oja_A 121 -------------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG- 186 (487)
T ss_dssp -------------SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-
T ss_pred -------------CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-
Confidence 678888888888888888888889999999999999888888776 78899999999999887633
Q ss_pred chhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCc-cccchhccccc
Q 045139 638 SVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS-GTVPQCLNNLT 716 (820)
Q Consensus 638 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~ 716 (820)
...+++|++|+|++|++++ +|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++|++. +.+|..+..++
T Consensus 187 -~~~l~~L~~L~Ls~N~l~~-~~~~~~-~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 187 -QVVFAKLKTLDLSSNKLAF-MGPEFQ-SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (487)
T ss_dssp -CCCCTTCCEEECCSSCCCE-ECGGGG-GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred -cccCCCCCEEECCCCCCCC-CCHhHc-CCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence 4468899999999999986 444566 68999999999999985 7778888899999999999988 66777777776
Q ss_pred cccc
Q 045139 717 AMTA 720 (820)
Q Consensus 717 ~L~~ 720 (820)
.+..
T Consensus 263 ~L~~ 266 (487)
T 3oja_A 263 RVQT 266 (487)
T ss_dssp HHHH
T ss_pred CCcE
Confidence 6643
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=7.4e-23 Score=212.00 Aligned_cols=216 Identities=29% Similarity=0.364 Sum_probs=118.5
Q ss_pred CCCcccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCC
Q 045139 73 KDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGF 152 (820)
Q Consensus 73 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l 152 (820)
.++|.|.|+.|.. .+.++.+++++ ..++ .+|..+. +.+++|++++|.+.+. .+..++++++|++|++++|.+
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~---~~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l 73 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSS---KKLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKL 73 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTT---SCCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccC---CCCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCcc
Confidence 4789999998853 23456777777 5555 3555443 5677777777777663 444677777777777777777
Q ss_pred CCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCc
Q 045139 153 TGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIA 232 (820)
Q Consensus 153 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 232 (820)
++..+..+..+++|++|++++| .+... .+..+..+++|++|++++|.+++..+
T Consensus 74 ~~i~~~~~~~l~~L~~L~l~~n-------------------------~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~ 126 (270)
T 2o6q_A 74 QTLPAGIFKELKNLETLWVTDN-------------------------KLQAL--PIGVFDQLVNLAELRLDRNQLKSLPP 126 (270)
T ss_dssp SCCCTTTTSSCTTCCEEECCSS-------------------------CCCCC--CTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CeeChhhhcCCCCCCEEECCCC-------------------------cCCcC--CHhHcccccCCCEEECCCCccCeeCH
Confidence 7444444566666666666665 22221 11234445555555555555554444
Q ss_pred cccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcch-h
Q 045139 233 SSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-S 311 (820)
Q Consensus 233 ~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~-~ 311 (820)
..+..+ + +|++|++++|.++ .+|...|..+++|++|++++|+++.+|. .
T Consensus 127 ---~~~~~l-~-------------------------~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 176 (270)
T 2o6q_A 127 ---RVFDSL-T-------------------------KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176 (270)
T ss_dssp ---TTTTTC-T-------------------------TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ---HHhCcC-c-------------------------CCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhH
Confidence 222333 3 4444444444444 3333334455555555555555554433 2
Q ss_pred hhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCc
Q 045139 312 FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLR 358 (820)
Q Consensus 312 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~ 358 (820)
|..+++|++|++++|++++..+..|..++ +|+.|++++|++.
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLE-----KLKMLQLQENPWD 218 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCT-----TCCEEECCSSCBC
T ss_pred hccCCCcCEEECCCCcCCcCCHHHhcccc-----CCCEEEecCCCee
Confidence 44455555555555555544444444444 4555555555443
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=4.4e-23 Score=215.57 Aligned_cols=198 Identities=23% Similarity=0.227 Sum_probs=175.0
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+++.++++++.++ .+|..+. +++++|++++|++++..|..|..+++|++|++++|.+++..+. ..+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence 7899999999998 5666554 7899999999999988889999999999999999999875443 789999999999
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
+|+++ .+|..+. .+++|++|++++|++++..|..|..+++|++|++++|++++..|..|..+++|
T Consensus 86 ~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------- 150 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL------------- 150 (290)
T ss_dssp SSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------------
T ss_pred CCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC-------------
Confidence 99998 7888776 79999999999999998878889999999999999999997766677777777
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD 810 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld 810 (820)
+.|+|++|++++..+ .+..+++|+.|+|++|+++ .+|..+..+.+|+.++
T Consensus 151 ----------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~ 201 (290)
T 1p9a_G 151 ----------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201 (290)
T ss_dssp ----------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEE
T ss_pred ----------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEE
Confidence 899999999995444 5688999999999999999 7888888899999999
Q ss_pred CCCCcCcc
Q 045139 811 LSKNMLMR 818 (820)
Q Consensus 811 Ls~N~l~g 818 (820)
|++|++.+
T Consensus 202 L~~Np~~C 209 (290)
T 1p9a_G 202 LHGNPWLC 209 (290)
T ss_dssp CCSCCBCC
T ss_pred eCCCCccC
Confidence 99999875
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.6e-22 Score=210.39 Aligned_cols=183 Identities=20% Similarity=0.244 Sum_probs=151.9
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+|++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 132 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (276)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc
Confidence 78889999998887777788889999999999999988888889999999999999999988777788899999999999
Q ss_pred CCcCccc-cCcchhcCCCCccEEEcCcccccccCCcccCCCCCCC----EEeCcCCCCccccchhccccccccccccCCc
Q 045139 652 HNKISGI-IPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQ----VLDLSQNNISGTVPQCLNNLTAMTANKSSNA 726 (820)
Q Consensus 652 ~N~l~~~-~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~ 726 (820)
+|++++. +|..+. .+++|++|++++|++++..+..+..+++|+ .|++++|++++..+..+.. .+|
T Consensus 133 ~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L-------- 202 (276)
T 2z62_A 133 HNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRL-------- 202 (276)
T ss_dssp SSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCE--------
T ss_pred CCccceecCchhhc-cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-Ccc--------
Confidence 9999863 688887 789999999999999887777777777776 8999999998554444332 234
Q ss_pred ccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCc
Q 045139 727 MIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIP 797 (820)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip 797 (820)
+.|++++|++++..+ .+..+++|+.|++++|.+++..|
T Consensus 203 ---------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 203 ---------------------------------KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp ---------------------------------EEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ---------------------------------cEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 889999999985555 57889999999999999987654
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=4.4e-23 Score=213.85 Aligned_cols=142 Identities=18% Similarity=0.204 Sum_probs=73.9
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+++.|++++|.++. + ..+..+++|++|++++|++++ + ..++.+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 45555555555542 2 234555555555555555553 1 245555555555555555555554455555555555555
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM 718 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 718 (820)
+|++++..|..+. .+++|++|++++|++++..|..+..+++|+.|++++|++++..|..+.+++.|
T Consensus 118 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 118 ENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp TSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 5555543333333 45555555555555554444445555555555555555554444444444444
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.4e-23 Score=222.13 Aligned_cols=203 Identities=23% Similarity=0.238 Sum_probs=172.0
Q ss_pred cccEEEccCCccccccCccc--ccCCCCcEEEcCCCeeeecCC----CCcccccCCcEEeccCCcccccCCcchhcCCCC
Q 045139 572 HFRYLDLSDNLLSGELPNCS--KNWQKLTVLNLANNKFSGKIP----DSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQL 645 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 645 (820)
+|++|++++|.+++..|..+ ..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 69999999999999999888 899999999999999997655 344578999999999999999989999999999
Q ss_pred CEEECCCCcCccc--cC--cchhcCCCCccEEEcCcccccccCCc----ccCCCCCCCEEeCcCCCCccccchhcccccc
Q 045139 646 TVLDLGHNKISGI--IP--AWIGDSLPDLVVLSLRSNNFHGRVPV----QVCHLQRIQVLDLSQNNISGTVPQCLNNLTA 717 (820)
Q Consensus 646 ~~L~Ls~N~l~~~--~p--~~l~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 717 (820)
++|++++|++.+. ++ ..+. .+++|++|++++|+++. +|. .+..+++|++||+++|++++.+|..+..+..
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPH-KFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTT-SSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CEEECCCCCCccchhhhHHHhhh-cCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 9999999998753 22 2234 68999999999999973 333 2577899999999999999888888776642
Q ss_pred ccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCC
Q 045139 718 MTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPI 796 (820)
Q Consensus 718 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~i 796 (820)
+ +.|+.|+|++|+++ .+| .+. ++|++|+|++|++++.
T Consensus 250 ~--------------------------------------~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~- 287 (310)
T 4glp_A 250 S--------------------------------------SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA- 287 (310)
T ss_dssp C--------------------------------------TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-
T ss_pred c--------------------------------------CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-
Confidence 2 23489999999999 788 665 8999999999999964
Q ss_pred cccccCCCCCCeEeCCCCcCccc
Q 045139 797 PSKIGGLTLLNSLDLSKNMLMRA 819 (820)
Q Consensus 797 p~~l~~l~~L~~LdLs~N~l~g~ 819 (820)
|. +..+++|+.|++++|+++.+
T Consensus 288 ~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 288 PQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CC-TTSCCCCSCEECSSTTTSCC
T ss_pred ch-hhhCCCccEEECcCCCCCCC
Confidence 44 67889999999999999753
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2.1e-22 Score=208.75 Aligned_cols=200 Identities=20% Similarity=0.211 Sum_probs=173.8
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
.+..+++..+.+.+.. ....+++|+.|++++|.+.. + ..++.+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 4556677777776543 46778999999999999883 3 3689999999999999999863 479999999999999
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
+|++++..|..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.+++.|
T Consensus 94 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------- 159 (272)
T 3rfs_A 94 GNQLQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL------------- 159 (272)
T ss_dssp TSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCccCccChhHhc-CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-------------
Confidence 9999976666666 79999999999999998888889999999999999999997777777887777
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD 810 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld 810 (820)
+.|++++|++++..| .++.+++|++|++++|++++..|..|+.+++|++|+
T Consensus 160 ----------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 160 ----------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp ----------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ----------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEE
Confidence 899999999997666 678999999999999999998888889999999999
Q ss_pred CCCCcCccc
Q 045139 811 LSKNMLMRA 819 (820)
Q Consensus 811 Ls~N~l~g~ 819 (820)
+++|+++|.
T Consensus 212 l~~N~~~~~ 220 (272)
T 3rfs_A 212 LHDNPWDCT 220 (272)
T ss_dssp CCSSCBCCC
T ss_pred ccCCCcccc
Confidence 999999875
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=4.4e-22 Score=203.74 Aligned_cols=179 Identities=18% Similarity=0.203 Sum_probs=124.4
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
..++++++++.++ .+|..+. +.++.|++++|++.+..+..|+.+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 5677788888777 5555544 567777777777777667677777777777777777777777677777777777777
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
+|++++..+..+. .+++|++|+|++|++++..+..+..+++|+.|++++|++++..|..+.++++|
T Consensus 92 ~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------- 157 (251)
T 3m19_A 92 NNQLASLPLGVFD-HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL------------- 157 (251)
T ss_dssp TSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCcccccChhHhc-ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC-------------
Confidence 7777754444444 57777777777777776555556677777777777777775555556665555
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccC
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGP 795 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ 795 (820)
+.|||++|++++..| .+..+++|+.|+|++|.+++.
T Consensus 158 ----------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 158 ----------------------------QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ----------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ----------------------------CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 667777777775555 666677777777777777654
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.1e-23 Score=230.55 Aligned_cols=250 Identities=17% Similarity=0.207 Sum_probs=150.0
Q ss_pred CCchhhhcCCCccEEecCCCCccCCCCchhh---ccCCCcEEEEcCCCcCC---CCCCcccccccCCCCceeccCCcCcC
Q 045139 466 QFPKWLQTQNKFSELDVSAAEISDTVPNWFW---DLSPNLYYLNLSHNHFT---GMLPDLSQKFTAYPPEIDLSANSFEG 539 (820)
Q Consensus 466 ~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~---~~~~~L~~L~ls~n~l~---~~~p~~~~~~~~l~~~l~ls~n~~~~ 539 (820)
.++..+..+++|++|++++|.+++..+..+. ..+++|++|++++|.+. +.+|..+..+..
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~-------------- 88 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ-------------- 88 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH--------------
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH--------------
Confidence 4667778888888888888888766444322 12356777777775432 222221110000
Q ss_pred CCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCcccc----ccCcccccCCCCcEEEcCCCeeeecCCCCc
Q 045139 540 PIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSG----ELPNCSKNWQKLTVLNLANNKFSGKIPDSM 615 (820)
Q Consensus 540 ~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 615 (820)
.+.. ..+|++|++++|.+++ .+|..+..+++|++|+|++|.+++..+..+
T Consensus 89 ----~l~~----------------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 142 (386)
T 2ca6_A 89 ----ALLK----------------------CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 142 (386)
T ss_dssp ----HHTT----------------------CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH
T ss_pred ----HHhh----------------------CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHH
Confidence 0000 0167777777777776 366677777777777777777764433333
Q ss_pred c----cc---------cCCcEEeccCCccc-ccCC---cchhcCCCCCEEECCCCcCcc-----ccCcchhcCCCCccEE
Q 045139 616 D----FN---------CMMLSLHLRNNSFI-GELP---SSVKSFTQLTVLDLGHNKISG-----IIPAWIGDSLPDLVVL 673 (820)
Q Consensus 616 ~----~l---------~~L~~L~Ls~N~l~-~~~p---~~l~~l~~L~~L~Ls~N~l~~-----~~p~~l~~~l~~L~~L 673 (820)
. .+ ++|++|++++|+++ +.+| ..+..+++|++|++++|+++. .+|..+. .+++|++|
T Consensus 143 ~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~-~~~~L~~L 221 (386)
T 2ca6_A 143 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-YCQELKVL 221 (386)
T ss_dssp HHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-GCTTCCEE
T ss_pred HHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh-cCCCccEE
Confidence 3 33 67777777777776 3334 355667777777777777762 2333454 56777777
Q ss_pred EcCccccc----ccCCcccCCCCCCCEEeCcCCCCccc----cchhccc--cccccccccCCcccccCCccccccCceeE
Q 045139 674 SLRSNNFH----GRVPVQVCHLQRIQVLDLSQNNISGT----VPQCLNN--LTAMTANKSSNAMIRYPLRTDYYNDHALL 743 (820)
Q Consensus 674 ~L~~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (820)
+|++|.++ +.+|..+..+++|+.|+|++|++++. +|..+.. ++.|
T Consensus 222 ~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L------------------------- 276 (386)
T 2ca6_A 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL------------------------- 276 (386)
T ss_dssp ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCC-------------------------
T ss_pred ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCe-------------------------
Confidence 77777764 45666666677777777777776654 3333321 3333
Q ss_pred EeeccccccccccCceEEEECCCCcCee----cCC-Cc-ccccCCCEEeCCCCccccCCc
Q 045139 744 VWKRKDSEYRNTLGLVKSIDLSSNRLYG----EIP-EV-TSLVGLISLNLSKNSLTGPIP 797 (820)
Q Consensus 744 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~----~ip-~l-~~l~~L~~L~Ls~N~l~~~ip 797 (820)
+.|+|++|++++ .+| .+ .++++|++|++++|.+++..|
T Consensus 277 ----------------~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 277 ----------------QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp ----------------CEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ----------------EEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 667777777765 355 44 456677777777777766553
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=6.1e-22 Score=201.14 Aligned_cols=196 Identities=18% Similarity=0.182 Sum_probs=170.2
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCe-eeecCCCCcccccCCcEEeccC-CcccccCCcchhcCCCCCEEE
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNK-FSGKIPDSMDFNCMMLSLHLRN-NSFIGELPSSVKSFTQLTVLD 649 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~ 649 (820)
++++|++++|++++..+..|.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78999999999998777799999999999999997 8877777999999999999999 999988888999999999999
Q ss_pred CCCCcCccccCcchhcCCCCcc---EEEcCcc-cccccCCcccCCCCCCC-EEeCcCCCCccccchhccccccccccccC
Q 045139 650 LGHNKISGIIPAWIGDSLPDLV---VLSLRSN-NFHGRVPVQVCHLQRIQ-VLDLSQNNISGTVPQCLNNLTAMTANKSS 724 (820)
Q Consensus 650 Ls~N~l~~~~p~~l~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~ 724 (820)
+++|++++ +|. +. .+++|+ +|++++| ++++..+..|..+++|+ .|++++|+++ .+|......+.|
T Consensus 112 l~~n~l~~-lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L------ 181 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL------ 181 (239)
T ss_dssp EEEECCCS-CCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEE------
T ss_pred CCCCCCcc-ccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCC------
Confidence 99999995 776 55 688888 9999999 99977777899999999 9999999998 666533222444
Q ss_pred CcccccCCccccccCceeEEeeccccccccccCceEEEECCCCc-CeecCC-Ccccc-cCCCEEeCCCCccccCCccccc
Q 045139 725 NAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNR-LYGEIP-EVTSL-VGLISLNLSKNSLTGPIPSKIG 801 (820)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~~~ip-~l~~l-~~L~~L~Ls~N~l~~~ip~~l~ 801 (820)
+.|++++|+ +++..+ .+..+ ++|+.|++++|++++ +|..
T Consensus 182 -----------------------------------~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-- 223 (239)
T 2xwt_C 182 -----------------------------------DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-- 223 (239)
T ss_dssp -----------------------------------EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--
T ss_pred -----------------------------------CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--
Confidence 899999995 986556 78899 999999999999995 5554
Q ss_pred CCCCCCeEeCCCCc
Q 045139 802 GLTLLNSLDLSKNM 815 (820)
Q Consensus 802 ~l~~L~~LdLs~N~ 815 (820)
.+++|+.|+++++.
T Consensus 224 ~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 224 GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCSEEECTTC-
T ss_pred HhccCceeeccCcc
Confidence 68899999999874
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=3e-21 Score=201.57 Aligned_cols=176 Identities=26% Similarity=0.289 Sum_probs=136.7
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
.++.|++++|.+++..+..+..+++|++|++++|++++..+. +.+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 677888888888877777888888888888888888764432 67788888888888887 567777888888888888
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
+|++++..|..+. .+++|++|+|++|++++..+..+..+++|+.|++++|++++..+..+.+++.|
T Consensus 109 ~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L------------- 174 (290)
T 1p9a_G 109 FNRLTSLPLGALR-GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL------------- 174 (290)
T ss_dssp SSCCCCCCSSTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC-------------
T ss_pred CCcCcccCHHHHc-CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC-------------
Confidence 8888855556665 68888888888888887666677788888888888888885444555666666
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccc
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT 793 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~ 793 (820)
+.|+|++|+++ .+| .+..+..|+.|+|++|.+.
T Consensus 175 ----------------------------~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 175 ----------------------------DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ----------------------------CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ----------------------------CEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 78888888887 667 7777788888888888765
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.9e-21 Score=205.18 Aligned_cols=190 Identities=21% Similarity=0.343 Sum_probs=147.2
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+++.|++++|.++. +| .+..+++|++|++++|++++..+ +..+++|++|++++|++++. ..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence 78888888888874 44 57888888888888888885444 88888888888888888753 368888888888888
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
+|++++ +|. +. .+++|++|++++|++++..+ +..+++|+.|++++|++++. |. +.+++.|
T Consensus 116 ~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L------------- 175 (308)
T 1h6u_A 116 STQITD-VTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKL------------- 175 (308)
T ss_dssp TSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTC-------------
T ss_pred CCCCCC-chh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCC-------------
Confidence 888875 443 54 68888888888888885443 77888888888888888753 33 5555555
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEeC
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDL 811 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdL 811 (820)
+.|++++|+++ .+|.+..+++|+.|++++|++++..| +..+++|++|++
T Consensus 176 ----------------------------~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l 224 (308)
T 1h6u_A 176 ----------------------------TTLKADDNKIS-DISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224 (308)
T ss_dssp ----------------------------CEEECCSSCCC-CCGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEE
T ss_pred ----------------------------CEEECCCCccC-cChhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEc
Confidence 78888888887 44457788888888888888886543 778888888888
Q ss_pred CCCcCcc
Q 045139 812 SKNMLMR 818 (820)
Q Consensus 812 s~N~l~g 818 (820)
++|++++
T Consensus 225 ~~N~i~~ 231 (308)
T 1h6u_A 225 TNQTITN 231 (308)
T ss_dssp EEEEEEC
T ss_pred cCCeeec
Confidence 8888876
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=4.7e-21 Score=196.07 Aligned_cols=177 Identities=20% Similarity=0.263 Sum_probs=95.0
Q ss_pred CcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcC
Q 045139 597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR 676 (820)
Q Consensus 597 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~ 676 (820)
.++++++++.++ .+|..+. +.++.|++++|.+.+..+..+.++++|++|++++|++++..|..+. .+++|++|+++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-DLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-cCCcCCEEECC
Confidence 445555555555 3444333 3555555555555555555555555555555555555544444443 45555555555
Q ss_pred cccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeecccccccccc
Q 045139 677 SNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTL 756 (820)
Q Consensus 677 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 756 (820)
+|++++..+..+..+++|++|++++|++++..+..+.+++.|
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------------------------------------- 133 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL-------------------------------------- 133 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc--------------------------------------
Confidence 555554444555555555555555555554433344444444
Q ss_pred CceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCcc
Q 045139 757 GLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMR 818 (820)
Q Consensus 757 ~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g 818 (820)
+.|+|++|++++..| .++.+++|++|+|++|++++..|..|..+++|++|++++|++++
T Consensus 134 ---~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 134 ---KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ---CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ---cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 555555555554333 45555555555555555555544455555555555555555554
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.4e-22 Score=217.38 Aligned_cols=265 Identities=20% Similarity=0.187 Sum_probs=198.4
Q ss_pred CCCcccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCC--CCCCEEECcCCCCCCcccCccccCCCCCCEEeccCC
Q 045139 73 KDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGL--QHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNA 150 (820)
Q Consensus 73 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l--~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n 150 (820)
.-|.+|.++.|+ ...++.+++++ +.+. +..+.++ +++++|++++|.+.+. .+ .+..+++|++|++++|
T Consensus 34 ~vc~~W~~~~~~--~~~~~~l~l~~---~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~-~~~~~~~L~~L~L~~~ 103 (336)
T 2ast_B 34 GVCKRWYRLASD--ESLWQTLDLTG---KNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LA-EHFSPFRVQHMDLSNS 103 (336)
T ss_dssp SSCHHHHHHHTC--STTSSEEECTT---CBCC---HHHHHHHHHTTCSEEECTTCEECSC-CC-SCCCCBCCCEEECTTC
T ss_pred HHHHHHHHHhcC--chhheeecccc---ccCC---HHHHHhhhhccceEEEcCCcccccc-ch-hhccCCCCCEEEccCC
Confidence 457789998875 33578899988 5555 4566777 8999999999999874 44 4678999999999999
Q ss_pred CCCCC-CCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCc-cCCCCccHHHHhCCCCCCCEEEcCCC-CC
Q 045139 151 GFTGR-VPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQV-NLGEATDWLQVVSQLPSLTELQLRGC-NL 227 (820)
Q Consensus 151 ~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~l~~l~~L~~L~Ls~n-~l 227 (820)
.+++. +|..+..+++|++|++++| ......+..++.+++|++|++++| .+++ ..++..+.++++|++|++++| .+
T Consensus 104 ~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 104 VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp EECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTTC
T ss_pred CcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCCCCCc
Confidence 98866 8888999999999999999 444456667888999999999998 5553 236677888999999999999 88
Q ss_pred CCC-CccccccccCCcC-CccEEECcCC--CCC-CchhhhhhccCCCCcEEEccCCc-ccCCCCCCCCCCCCCCCEEECC
Q 045139 228 PSV-IASSSVSFSNSSR-SLAHLDLSLN--DVS-NSVYYWLFNSSSSLVYLDLSSNK-LQGPIPDSAFPNPTSLSYLDLS 301 (820)
Q Consensus 228 ~~~-~~~~~~~l~~~~~-~L~~L~Ls~n--~l~-~~~~~~~~~~~~~L~~L~Ls~n~-l~g~ip~~~l~~l~~L~~L~Ls 301 (820)
++. ++ ..+..+ + +|++|++++| .++ +.++..+.... +|++|++++|. +++..+.. +..+++|++|+++
T Consensus 182 ~~~~~~---~~~~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~ 255 (336)
T 2ast_B 182 TEKHVQ---VAVAHV-SETITQLNLSGYRKNLQKSDLSTLVRRCP-NLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLS 255 (336)
T ss_dssp CHHHHH---HHHHHS-CTTCCEEECCSCGGGSCHHHHHHHHHHCT-TCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECT
T ss_pred ChHHHH---HHHHhc-ccCCCEEEeCCCcccCCHHHHHHHHhhCC-CCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCC
Confidence 754 33 344555 7 8999999999 566 45565555554 89999999998 66555655 7888999999999
Q ss_pred CCC-CC-CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCC
Q 045139 302 NNQ-LV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD 363 (820)
Q Consensus 302 ~n~-l~-~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~ 363 (820)
+|. +. .....+.++++|++|++++| ++... +..+.. .++.|+++.|++++..|.
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~---~~~l~~----~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT---LQLLKE----ALPHLQINCSHFTTIARP 311 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC---HHHHHH----HSTTSEESCCCSCCTTCS
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHH---HHHHHh----hCcceEEecccCccccCC
Confidence 885 33 11235778888999999888 44432 333221 356666788888877776
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=4.2e-23 Score=223.62 Aligned_cols=138 Identities=22% Similarity=0.236 Sum_probs=71.2
Q ss_pred cccEEEccCCccccccCcccc----cC-CCCcEEEcCCCeeeecCCCCccc-----ccCCcEEeccCCcccccC----Cc
Q 045139 572 HFRYLDLSDNLLSGELPNCSK----NW-QKLTVLNLANNKFSGKIPDSMDF-----NCMMLSLHLRNNSFIGEL----PS 637 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~~~----p~ 637 (820)
+|++|++++|.+++..+..+. .+ ++|++|++++|++++..+..+.. .++|++|++++|.+++.. +.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 566666666666655444332 23 56666666666665544433322 245666666666665432 22
Q ss_pred chhcCC-CCCEEECCCCcCccccCcchhc---CC-CCccEEEcCccccccc----CCcccCC-CCCCCEEeCcCCCCccc
Q 045139 638 SVKSFT-QLTVLDLGHNKISGIIPAWIGD---SL-PDLVVLSLRSNNFHGR----VPVQVCH-LQRIQVLDLSQNNISGT 707 (820)
Q Consensus 638 ~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~---~l-~~L~~L~L~~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~ 707 (820)
.+..++ +|++|+|++|++++..+..+.. .. ++|++|+|++|++++. ++..+.. .++|+.|||++|++++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 333343 5666666666665544433221 22 3566666666665541 2333333 23566666666665544
Q ss_pred cc
Q 045139 708 VP 709 (820)
Q Consensus 708 ~p 709 (820)
.+
T Consensus 241 ~~ 242 (362)
T 3goz_A 241 SL 242 (362)
T ss_dssp CH
T ss_pred HH
Confidence 33
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.2e-22 Score=219.94 Aligned_cols=265 Identities=20% Similarity=0.154 Sum_probs=181.2
Q ss_pred EEccCCcccccccccccCCCCCCEEecCCCcCccccCH---HHhhcCC-CCCEEeCcCCccccccCCCCcCccccceeec
Q 045139 383 LYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITE---AHLSNLS-RLTYLDLSHNSLILNFGSGWVPSFELNIIRL 458 (820)
Q Consensus 383 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 458 (820)
+.++.|.++|.+|..+...++|++|++++|.+++..+. ..+..++ +|++|++++|.+....
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--------------- 67 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN--------------- 67 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC---------------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH---------------
Confidence 45677788888787777777788888888888764331 3577777 7888888888775422
Q ss_pred ccccCCCCCchhhhcC-----CCccEEecCCCCccCCCCchhhcc----CCCcEEEEcCCCcCCCCCCcccccc-cCCCC
Q 045139 459 GACKQGPQFPKWLQTQ-----NKFSELDVSAAEISDTVPNWFWDL----SPNLYYLNLSHNHFTGMLPDLSQKF-TAYPP 528 (820)
Q Consensus 459 ~~~~~~~~~~~~l~~~-----~~L~~L~l~~n~i~~~~p~~~~~~----~~~L~~L~ls~n~l~~~~p~~~~~~-~~l~~ 528 (820)
+..+... ++|++|++++|.+++..+..+... .++|++|++++|++++..+..+... ..+
T Consensus 68 ---------~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~-- 136 (362)
T 3goz_A 68 ---------SDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL-- 136 (362)
T ss_dssp ---------HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS--
T ss_pred ---------HHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC--
Confidence 2233332 777778888887776666544332 2578888888888766544322211 000
Q ss_pred ceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccc----cCcccccCC-CCcEEEcC
Q 045139 529 EIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGE----LPNCSKNWQ-KLTVLNLA 603 (820)
Q Consensus 529 ~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~-~L~~L~Ls 603 (820)
..+|++|++++|.+++. ++..+..++ +|++|+++
T Consensus 137 -----------------------------------------~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 137 -----------------------------------------PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp -----------------------------------------CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred -----------------------------------------CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 00677777777777743 334445555 88888888
Q ss_pred CCeeeecCCCCccc----c-cCCcEEeccCCccccc----CCcchhc-CCCCCEEECCCCcCccccCcc---hhcCCCCc
Q 045139 604 NNKFSGKIPDSMDF----N-CMMLSLHLRNNSFIGE----LPSSVKS-FTQLTVLDLGHNKISGIIPAW---IGDSLPDL 670 (820)
Q Consensus 604 ~N~l~~~~p~~l~~----l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~---l~~~l~~L 670 (820)
+|++++..+..++. + ++|++|+|++|.+++. ++..+.. .++|++|+|++|++++..+.. +...+++|
T Consensus 176 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L 255 (362)
T 3goz_A 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTC
T ss_pred CCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCc
Confidence 88888766654443 3 5899999999988863 4555655 458999999999998654422 22367899
Q ss_pred cEEEcCcccccc-------cCCcccCCCCCCCEEeCcCCCCccccchhccc
Q 045139 671 VVLSLRSNNFHG-------RVPVQVCHLQRIQVLDLSQNNISGTVPQCLNN 714 (820)
Q Consensus 671 ~~L~L~~N~l~~-------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 714 (820)
++|++++|.+.+ .++..+..+++|+.||+++|++.+..|..+.+
T Consensus 256 ~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~ 306 (362)
T 3goz_A 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN 306 (362)
T ss_dssp SEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHH
T ss_pred cEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHH
Confidence 999999998543 23456788999999999999998776655543
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=8.4e-23 Score=223.55 Aligned_cols=161 Identities=20% Similarity=0.243 Sum_probs=133.3
Q ss_pred cccEEEccCCccccccCcc----cccC---------CCCcEEEcCCCeee-ecCC---CCcccccCCcEEeccCCcccc-
Q 045139 572 HFRYLDLSDNLLSGELPNC----SKNW---------QKLTVLNLANNKFS-GKIP---DSMDFNCMMLSLHLRNNSFIG- 633 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~----~~~l---------~~L~~L~Ls~N~l~-~~~p---~~l~~l~~L~~L~Ls~N~l~~- 633 (820)
+|++|++++|.+++..+.. +..+ ++|++|++++|+++ +.+| ..+..+++|++|++++|+++.
T Consensus 123 ~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 202 (386)
T 2ca6_A 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 202 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH
T ss_pred CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh
Confidence 7899999999997554443 4444 89999999999997 3445 467789999999999999983
Q ss_pred ----cCCcchhcCCCCCEEECCCCcCc----cccCcchhcCCCCccEEEcCccccccc----CCccc--CCCCCCCEEeC
Q 045139 634 ----ELPSSVKSFTQLTVLDLGHNKIS----GIIPAWIGDSLPDLVVLSLRSNNFHGR----VPVQV--CHLQRIQVLDL 699 (820)
Q Consensus 634 ----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~l~~~l~~L~~L~L~~N~l~~~----~p~~l--~~l~~L~~L~L 699 (820)
..|..+..+++|++|+|++|.++ +.+|..+. .+++|+.|+|++|++++. +|..+ +.+++|+.|+|
T Consensus 203 g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 203 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281 (386)
T ss_dssp HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEEC
Confidence 34558899999999999999996 67888887 799999999999999875 56666 44999999999
Q ss_pred cCCCCcc----ccchhc-cccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC
Q 045139 700 SQNNISG----TVPQCL-NNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP 774 (820)
Q Consensus 700 s~N~l~~----~~p~~l-~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip 774 (820)
++|++++ .+|..+ .+++.| +.|++++|++++..|
T Consensus 282 ~~n~i~~~g~~~l~~~l~~~l~~L-----------------------------------------~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 282 QYNEIELDAVRTLKTVIDEKMPDL-----------------------------------------LFLELNGNRFSEEDD 320 (386)
T ss_dssp CSSCCBHHHHHHHHHHHHHHCTTC-----------------------------------------CEEECTTSBSCTTSH
T ss_pred cCCcCCHHHHHHHHHHHHhcCCCc-----------------------------------------eEEEccCCcCCcchh
Confidence 9999997 477766 556666 899999999997663
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.5e-22 Score=217.16 Aligned_cols=201 Identities=19% Similarity=0.209 Sum_probs=107.2
Q ss_pred CccEEecCCCCccCCCCchhhcc-CCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEecc
Q 045139 476 KFSELDVSAAEISDTVPNWFWDL-SPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILF 554 (820)
Q Consensus 476 ~L~~L~l~~n~i~~~~p~~~~~~-~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~ 554 (820)
.++.++++++.+.. ..+... .++++.+++++|.+.+..+.. ..++.+ +.+++++|.+++.
T Consensus 48 ~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L-~~L~L~~~~l~~~-------------- 108 (336)
T 2ast_B 48 LWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRV-QHMDLSNSVIEVS-------------- 108 (336)
T ss_dssp TSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCC-CEEECTTCEECHH--------------
T ss_pred hheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchhh-ccCCCC-CEEEccCCCcCHH--------------
Confidence 46677777776652 222221 146777777777766655542 223333 3333333333221
Q ss_pred CcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCC-eeee-cCCCCcccccCCcEEeccCC-cc
Q 045139 555 KNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANN-KFSG-KIPDSMDFNCMMLSLHLRNN-SF 631 (820)
Q Consensus 555 ~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~-~~p~~l~~l~~L~~L~Ls~N-~l 631 (820)
.++...... .+|++|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+
T Consensus 109 ------~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 109 ------TLHGILSQC-SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp ------HHHHHHTTB-CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred ------HHHHHHhhC-CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 011111111 15666666666666555556666666666666666 4544 24444555666666666666 55
Q ss_pred ccc-CCcchhcCC-CCCEEECCCC--cCc-cccCcchhcCCCCccEEEcCccc-ccccCCcccCCCCCCCEEeCcCCC
Q 045139 632 IGE-LPSSVKSFT-QLTVLDLGHN--KIS-GIIPAWIGDSLPDLVVLSLRSNN-FHGRVPVQVCHLQRIQVLDLSQNN 703 (820)
Q Consensus 632 ~~~-~p~~l~~l~-~L~~L~Ls~N--~l~-~~~p~~l~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~N~ 703 (820)
++. ++..+..++ +|++|++++| .++ +.+|..+. .+++|+.|++++|. +++..+..+..+++|+.|++++|.
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 543 455556666 6666666666 333 34444444 46666666666666 555555556666666666666664
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=207.49 Aligned_cols=177 Identities=21% Similarity=0.210 Sum_probs=148.8
Q ss_pred cccEEEccCCccccccC----cccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCccccc--C--CcchhcCC
Q 045139 572 HFRYLDLSDNLLSGELP----NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGE--L--PSSVKSFT 643 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~--p~~l~~l~ 643 (820)
+|++|++++|.+++..+ ..+..+++|++|++++|++.+..|..++.+++|++|++++|++.+. + +..+..++
T Consensus 118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 197 (310)
T 4glp_A 118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP 197 (310)
T ss_dssp CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence 89999999999987655 3456789999999999999988889999999999999999998753 2 23457899
Q ss_pred CCCEEECCCCcCccccCc---chhcCCCCccEEEcCcccccccCCcccCCC---CCCCEEeCcCCCCccccchhcccccc
Q 045139 644 QLTVLDLGHNKISGIIPA---WIGDSLPDLVVLSLRSNNFHGRVPVQVCHL---QRIQVLDLSQNNISGTVPQCLNNLTA 717 (820)
Q Consensus 644 ~L~~L~Ls~N~l~~~~p~---~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~ 717 (820)
+|++|++++|+++ .+|. ++...+++|++|+|++|++++..|..+..+ ++|++|++++|+++ .+|..+. +.
T Consensus 198 ~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~ 273 (310)
T 4glp_A 198 AIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AK 273 (310)
T ss_dssp CCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SC
T ss_pred CCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CC
Confidence 9999999999997 3343 232368999999999999998888888877 69999999999999 6777653 44
Q ss_pred ccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCcccc
Q 045139 718 MTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTG 794 (820)
Q Consensus 718 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~ 794 (820)
| +.|||++|+++ .+|.+..+++|+.|+|++|+++.
T Consensus 274 L-----------------------------------------~~L~Ls~N~l~-~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 274 L-----------------------------------------RVLDLSSNRLN-RAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-----------------------------------------SCEECCSCCCC-SCCCTTSCCCCSCEECSSTTTSC
T ss_pred C-----------------------------------------CEEECCCCcCC-CCchhhhCCCccEEECcCCCCCC
Confidence 4 88999999999 45767888999999999999974
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.4e-21 Score=195.67 Aligned_cols=187 Identities=15% Similarity=0.199 Sum_probs=163.3
Q ss_pred cccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCc-ccccCCcchhcCCCCCEEECCC-CcCccccC
Q 045139 583 LSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS-FIGELPSSVKSFTQLTVLDLGH-NKISGIIP 660 (820)
Q Consensus 583 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p 660 (820)
++ .+|. +. ++|++|++++|++++..+..|+.+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 44 5666 43 489999999999998888899999999999999997 8877777999999999999999 99996555
Q ss_pred cchhcCCCCccEEEcCcccccccCCcccCCCCCCC---EEeCcCC-CCccccchhccccccccccccCCcccccCCcccc
Q 045139 661 AWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQ---VLDLSQN-NISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDY 736 (820)
Q Consensus 661 ~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~ 736 (820)
..+. .+++|++|++++|++++ +|. +..+++|+ .|++++| ++++..+..|.+++.|
T Consensus 99 ~~f~-~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L------------------ 157 (239)
T 2xwt_C 99 DALK-ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE------------------ 157 (239)
T ss_dssp TSEE-CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS------------------
T ss_pred HHhC-CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc------------------
Confidence 6666 79999999999999996 776 88999998 9999999 9987666678888777
Q ss_pred ccCceeEEeeccccccccccCceE-EEECCCCcCeecCC-CcccccCCCEEeCCCCc-cccCCcccccCC-CCCCeEeCC
Q 045139 737 YNDHALLVWKRKDSEYRNTLGLVK-SIDLSSNRLYGEIP-EVTSLVGLISLNLSKNS-LTGPIPSKIGGL-TLLNSLDLS 812 (820)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l-~~L~~LdLs 812 (820)
+ .|++++|+++ .+| .....++|+.|++++|+ +++..+..|.++ ++|++||++
T Consensus 158 -----------------------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 158 -----------------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp -----------------------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred -----------------------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence 8 9999999999 677 55555899999999995 997778889999 999999999
Q ss_pred CCcCcc
Q 045139 813 KNMLMR 818 (820)
Q Consensus 813 ~N~l~g 818 (820)
+|++++
T Consensus 214 ~N~l~~ 219 (239)
T 2xwt_C 214 QTSVTA 219 (239)
T ss_dssp TCCCCC
T ss_pred CCcccc
Confidence 999975
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=3.3e-20 Score=209.86 Aligned_cols=193 Identities=23% Similarity=0.314 Sum_probs=115.2
Q ss_pred cceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEec
Q 045139 547 TVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHL 626 (820)
Q Consensus 547 ~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 626 (820)
+++.+++++|.+++..+... .+|++|++++|+++ .+| ..+++|++|++++|++++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~----~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP----PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC----TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCccCHhHc----CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 46666666666665222121 15667777777666 455 345666677777776665 555 443 6667777
Q ss_pred cCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCcc
Q 045139 627 RNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG 706 (820)
Q Consensus 627 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 706 (820)
++|++++ +|. .+++|++|++++|++++ +|. .+++|++|+|++|++++ +|. +. ++|+.|+|++|+|+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 7776665 444 45666777777776663 554 25666677777776664 555 44 66677777777666
Q ss_pred ccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEE
Q 045139 707 TVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISL 785 (820)
Q Consensus 707 ~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L 785 (820)
.+|. +.. .| ....+.++.|+|++|+|+ .|| .+..+++|+.|
T Consensus 194 ~lp~-~~~--~L----------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 194 SLPA-VPV--RN----------------------------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235 (571)
T ss_dssp SCCC-CC--------------------------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred chhh-HHH--hh----------------------------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEE
Confidence 4554 332 11 001122366777777776 566 66667777777
Q ss_pred eCCCCccccCCcccccCC
Q 045139 786 NLSKNSLTGPIPSKIGGL 803 (820)
Q Consensus 786 ~Ls~N~l~~~ip~~l~~l 803 (820)
+|++|.+++.+|..|..+
T Consensus 236 ~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 236 ILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ECCSSSCCHHHHHHHHHH
T ss_pred EeeCCcCCCcCHHHHHHh
Confidence 777777777777666554
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.1e-20 Score=184.11 Aligned_cols=182 Identities=19% Similarity=0.180 Sum_probs=149.3
Q ss_pred ccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCC
Q 045139 573 FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGH 652 (820)
Q Consensus 573 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 652 (820)
-+.++.+++.++ .+|..+ .++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++
T Consensus 9 ~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 367788888887 455544 46899999999999877777788999999999999999977777788999999999999
Q ss_pred CcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCC
Q 045139 653 NKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPL 732 (820)
Q Consensus 653 N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~ 732 (820)
|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+.++++|
T Consensus 86 n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L-------------- 150 (208)
T 2o6s_A 86 NQLQSLPNGVFD-KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL-------------- 150 (208)
T ss_dssp SCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC--------------
T ss_pred CcCCccCHhHhc-CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc--------------
Confidence 999855555555 78999999999999997777778889999999999999986666667777766
Q ss_pred ccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCcccccCCCC
Q 045139 733 RTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTL 805 (820)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 805 (820)
+.|++++|.+.+. ++.|+.|+++.|+++|.+|+.++.++.
T Consensus 151 ---------------------------~~L~l~~N~~~~~------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 151 ---------------------------QYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---------------------------CEEECCSCCBCCC------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---------------------------cEEEecCCCeecC------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 8899999988754 457888899999999999988887764
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=3.2e-20 Score=210.04 Aligned_cols=198 Identities=20% Similarity=0.260 Sum_probs=156.2
Q ss_pred ccCce-EecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCC
Q 045139 77 KWRGV-SCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGR 155 (820)
Q Consensus 77 ~w~gv-~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~ 155 (820)
.|.|+ .|. .++++.|++++ +.+++ +|..+. ++|++|+|++|.++. +| +.+++|++|+|++|.+++
T Consensus 49 ~~~~l~~C~--~~~L~~L~Ls~---n~L~~-lp~~l~--~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~- 114 (571)
T 3cvr_A 49 AVSLLKECL--INQFSELQLNR---LNLSS-LPDNLP--PQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST- 114 (571)
T ss_dssp HHHHHHHHH--HTTCSEEECCS---SCCSC-CCSCCC--TTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-
T ss_pred hhhhccccc--cCCccEEEeCC---CCCCc-cCHhHc--CCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-
Confidence 69998 675 35789999998 77876 787664 789999999999974 77 457899999999999996
Q ss_pred CCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCcccc
Q 045139 156 VPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSS 235 (820)
Q Consensus 156 ~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 235 (820)
+|. +.. +|++|++++| .+++. |. .+++|++|++++|.+++ +|
T Consensus 115 ip~-l~~--~L~~L~Ls~N-------------------------~l~~l---p~---~l~~L~~L~Ls~N~l~~-lp--- 156 (571)
T 3cvr_A 115 LPE-LPA--SLKHLDVDNN-------------------------QLTML---PE---LPALLEYINADNNQLTM-LP--- 156 (571)
T ss_dssp CCC-CCT--TCCEEECCSS-------------------------CCSCC---CC---CCTTCCEEECCSSCCSC-CC---
T ss_pred cch-hhc--CCCEEECCCC-------------------------cCCCC---CC---cCccccEEeCCCCccCc-CC---
Confidence 776 655 7888888877 33332 22 46777788888887776 33
Q ss_pred ccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCC-------CEEECCCCCCCCc
Q 045139 236 VSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSL-------SYLDLSNNQLVSV 308 (820)
Q Consensus 236 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L-------~~L~Ls~n~l~~i 308 (820)
. .+ ++|++|++++|.+++ +|. +. ++|++|++++|.++ .+|. +.. +| ++|+|++|+|+.+
T Consensus 157 ~---~l-~~L~~L~Ls~N~L~~-lp~-l~---~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~l 222 (571)
T 3cvr_A 157 E---LP-TSLEVLSVRNNQLTF-LPE-LP---ESLEALDVSTNLLE-SLPA--VPV--RNHHSEETEIFFRCRENRITHI 222 (571)
T ss_dssp C---CC-TTCCEEECCSSCCSC-CCC-CC---TTCCEEECCSSCCS-SCCC--CC----------CCEEEECCSSCCCCC
T ss_pred C---cC-CCcCEEECCCCCCCC-cch-hh---CCCCEEECcCCCCC-chhh--HHH--hhhcccccceEEecCCCcceec
Confidence 1 22 788888888888886 666 33 48999999999998 7887 433 66 9999999999999
Q ss_pred chhhhccCCCcEEEcCCCCCCCcchhhhhhcc
Q 045139 309 PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLS 340 (820)
Q Consensus 309 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 340 (820)
|..+..+++|++|++++|.+++.+|..+..+.
T Consensus 223 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 99988899999999999999999999888765
No 97
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.4e-19 Score=190.93 Aligned_cols=195 Identities=23% Similarity=0.313 Sum_probs=122.4
Q ss_pred ccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCC
Q 045139 111 LIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSF 190 (820)
Q Consensus 111 l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 190 (820)
+..+++|++|++++|.+.. +| .+..+++|++|++++|.+++ ++. ++.+++|++|++++|. ...++.+..
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~---l~~~~~~~~--- 105 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNP---LKNVSAIAG--- 105 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCC---CSCCGGGTT---
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCc---CCCchhhcC---
Confidence 4567788888888887765 55 57778888888888888874 343 7778888888887771 111223444
Q ss_pred CCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCC
Q 045139 191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL 270 (820)
Q Consensus 191 L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 270 (820)
+++|++|++++|.+++.. .+..+ ++|++|++++|.+++..+ +.... +|
T Consensus 106 -----------------------l~~L~~L~l~~n~l~~~~-----~l~~l-~~L~~L~l~~n~l~~~~~--l~~l~-~L 153 (308)
T 1h6u_A 106 -----------------------LQSIKTLDLTSTQITDVT-----PLAGL-SNLQVLYLDLNQITNISP--LAGLT-NL 153 (308)
T ss_dssp -----------------------CTTCCEEECTTSCCCCCG-----GGTTC-TTCCEEECCSSCCCCCGG--GGGCT-TC
T ss_pred -----------------------CCCCCEEECCCCCCCCch-----hhcCC-CCCCEEECCCCccCcCcc--ccCCC-Cc
Confidence 444444444444444321 13333 555555555555543322 33333 67
Q ss_pred cEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEE
Q 045139 271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350 (820)
Q Consensus 271 ~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L 350 (820)
++|++++|.++ .++. +..+++|++|++++|+++.++. +..+++|++|++++|++++..+ +..++ +|+.|
T Consensus 154 ~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~-----~L~~L 222 (308)
T 1h6u_A 154 QYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTS-----NLFIV 222 (308)
T ss_dssp CEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCT-----TCCEE
T ss_pred cEEEccCCcCC-CChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCC-----CCCEE
Confidence 77777777666 3443 6667777777777777776655 6777777777777777776553 55565 77778
Q ss_pred EcCCCCCcc
Q 045139 351 QLNSNMLRG 359 (820)
Q Consensus 351 ~L~~n~l~~ 359 (820)
++++|++++
T Consensus 223 ~l~~N~i~~ 231 (308)
T 1h6u_A 223 TLTNQTITN 231 (308)
T ss_dssp EEEEEEEEC
T ss_pred EccCCeeec
Confidence 887777764
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.1e-19 Score=180.03 Aligned_cols=175 Identities=22% Similarity=0.196 Sum_probs=147.8
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 78999999999997777778999999999999999997777778999999999999999998777778999999999999
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
+|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|++.+..| .+
T Consensus 109 ~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l------------- 167 (208)
T 2o6s_A 109 TNQLQSLPDGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GI------------- 167 (208)
T ss_dssp SSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT-------TT-------------
T ss_pred CCcCcccCHhHhc-cCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC-------CH-------------
Confidence 9999965555555 79999999999999997777778999999999999998875433 33
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCccc
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSK 799 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~ 799 (820)
+.|+++.|+++|.+| .++.++. ++..+...|..+..
T Consensus 168 ----------------------------~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~~ 204 (208)
T 2o6s_A 168 ----------------------------RYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVRS 204 (208)
T ss_dssp ----------------------------HHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGGG
T ss_pred ----------------------------HHHHHHHHhCCceeeccCccccC----CccccccCCCccee
Confidence 667888999999999 8887765 56666665555444
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=178.49 Aligned_cols=133 Identities=20% Similarity=0.220 Sum_probs=69.4
Q ss_pred CCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccC
Q 045139 645 LTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSS 724 (820)
Q Consensus 645 L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~ 724 (820)
+++|++++|++++..|......+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|.+++.|
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 107 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL------ 107 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC------
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC------
Confidence 34455555555433332211245555555555555554444455555555555555555554444445544444
Q ss_pred CcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCC
Q 045139 725 NAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGL 803 (820)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 803 (820)
+.|+|++|++++.+| .+..+++|+.|+|++|++++..|..|..+
T Consensus 108 -----------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 152 (220)
T 2v70_A 108 -----------------------------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152 (220)
T ss_dssp -----------------------------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTC
T ss_pred -----------------------------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCC
Confidence 555555555554445 55555555555555555555555555555
Q ss_pred CCCCeEeCCCCcCcc
Q 045139 804 TLLNSLDLSKNMLMR 818 (820)
Q Consensus 804 ~~L~~LdLs~N~l~g 818 (820)
++|++||+++|+++|
T Consensus 153 ~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 153 HSLSTLNLLANPFNC 167 (220)
T ss_dssp TTCCEEECCSCCEEC
T ss_pred CCCCEEEecCcCCcC
Confidence 555555555555554
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=4.7e-19 Score=190.71 Aligned_cols=239 Identities=23% Similarity=0.262 Sum_probs=142.1
Q ss_pred cccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCc-cccCCCCCCEEeccCCCCCC
Q 045139 76 CKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPA-FIGSLKNIRHLDLSNAGFTG 154 (820)
Q Consensus 76 c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~-~i~~l~~L~~L~Ls~n~l~~ 154 (820)
|.|..|.|++ .+++ .+|..+ .+++++|+|++|+++. +|+ .|+++++|++|+|++|.+.+
T Consensus 9 C~~~~v~C~~---------------~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~ 68 (350)
T 4ay9_X 9 CSNRVFLCQE---------------SKVT-EIPSDL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLE 68 (350)
T ss_dssp EETTEEEEES---------------TTCC-SCCTTC--CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCC
T ss_pred eeCCEEEecC---------------CCCC-ccCcCc--CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCC
Confidence 7788888863 2333 456555 3689999999999976 654 68999999999999999877
Q ss_pred CCCc-cCCCCCCCcEEe-CCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCc
Q 045139 155 RVPY-QLGNLTSLQYLD-LSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIA 232 (820)
Q Consensus 155 ~~p~-~l~~l~~L~~L~-Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 232 (820)
.+|. .|.++++++++. ++.| .+....+..+.. +++|++|++++|.+....+
T Consensus 69 ~i~~~~f~~L~~l~~~l~~~~N-~l~~l~~~~f~~--------------------------l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 69 VIEADVFSNLPKLHEIRIEKAN-NLLYINPEAFQN--------------------------LPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp EECTTSBCSCTTCCEEEEEEET-TCCEECTTSBCC--------------------------CTTCCEEEEEEECCSSCCC
T ss_pred ccChhHhhcchhhhhhhcccCC-cccccCchhhhh--------------------------ccccccccccccccccCCc
Confidence 6664 578888877644 4444 222222333444 4445555555554444433
Q ss_pred cccccccCCcCCccEEECcCC-CCCCchhh-hhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECC-CCCCCCcc
Q 045139 233 SSSVSFSNSSRSLAHLDLSLN-DVSNSVYY-WLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLS-NNQLVSVP 309 (820)
Q Consensus 233 ~~~~~l~~~~~~L~~L~Ls~n-~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls-~n~l~~ip 309 (820)
..+... .++..+++.++ .+. .++. .+......++.|++++|+++ .||..+| ...+|++++++ +|.++.+|
T Consensus 122 ---~~~~~~-~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f-~~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 122 ---VHKIHS-LQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF-NGTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp ---CTTCCB-SSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC-EECTTSS-TTEEEEEEECTTCTTCCCCC
T ss_pred ---hhhccc-chhhhhhhccccccc-cccccchhhcchhhhhhcccccccc-CCChhhc-cccchhHHhhccCCcccCCC
Confidence 222222 44555555443 332 3332 22333335666666666666 5555533 34556666665 35566665
Q ss_pred h-hhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecC
Q 045139 310 K-SFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLY 376 (820)
Q Consensus 310 ~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~ 376 (820)
. .|.++++|++|++++|+++...+..|. +|+.|.+.++.--..+|.+..+++|+.+++.
T Consensus 195 ~~~f~~l~~L~~LdLs~N~l~~lp~~~~~--------~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 195 NDVFHGASGPVILDISRTRIHSLPSYGLE--------NLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp TTTTTTEECCSEEECTTSCCCCCCSSSCT--------TCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred HHHhccCcccchhhcCCCCcCccChhhhc--------cchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 4 356666666666666666665444433 4555555555444567777778888877654
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=4.8e-19 Score=185.06 Aligned_cols=124 Identities=27% Similarity=0.294 Sum_probs=66.2
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+++.|++++|.++.. + .+..+++|++|++++|++++..+ ++.+++|++|++++|.+++ + ..+..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECC
Confidence 455566655555532 2 25555556666666665554332 5555555566665555553 2 235555555556665
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCcc
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG 706 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 706 (820)
+|++++ ++ .+. .+++|+.|++++|++++. ..+..+++|+.|++++|++++
T Consensus 121 ~n~i~~-~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 121 HNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp TSCCCC-CG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CCcCCC-Ch-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 555553 22 233 455555555555555543 345555555555555555554
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=1e-18 Score=188.12 Aligned_cols=241 Identities=21% Similarity=0.189 Sum_probs=182.0
Q ss_pred CEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCC
Q 045139 118 NYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLN 197 (820)
Q Consensus 118 ~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~ 197 (820)
++++.++++++. +|..+ .+++++|+|++|+|+...+.+|+++++|++|+|++|.
T Consensus 12 ~~v~C~~~~Lt~--iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~---------------------- 65 (350)
T 4ay9_X 12 RVFLCQESKVTE--IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND---------------------- 65 (350)
T ss_dssp TEEEEESTTCCS--CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT----------------------
T ss_pred CEEEecCCCCCc--cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC----------------------
Confidence 567888888875 88776 4689999999999994444578999999999999882
Q ss_pred CccCCCCccH-HHHhCCCCCCCE-EEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEc
Q 045139 198 QVNLGEATDW-LQVVSQLPSLTE-LQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDL 275 (820)
Q Consensus 198 ~n~l~~~~~~-~~~l~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L 275 (820)
+.+ .+ +..|.+++++++ +.+++|+++...| ..+..+ ++|++|++++|.+++..+..+.... ++..|++
T Consensus 66 ---i~~--~i~~~~f~~L~~l~~~l~~~~N~l~~l~~---~~f~~l-~~L~~L~l~~n~l~~~~~~~~~~~~-~l~~l~l 135 (350)
T 4ay9_X 66 ---VLE--VIEADVFSNLPKLHEIRIEKANNLLYINP---EAFQNL-PNLQYLLISNTGIKHLPDVHKIHSL-QKVLLDI 135 (350)
T ss_dssp ---TCC--EECTTSBCSCTTCCEEEEEEETTCCEECT---TSBCCC-TTCCEEEEEEECCSSCCCCTTCCBS-SCEEEEE
T ss_pred ---CCC--ccChhHhhcchhhhhhhcccCCcccccCc---hhhhhc-cccccccccccccccCCchhhcccc-hhhhhhh
Confidence 111 11 134566777665 5566788888777 566677 9999999999999876555555555 8899999
Q ss_pred cCC-cccCCCCCCCCCCCC-CCCEEECCCCCCCCcchhhhccCCCcEEEcCC-CCCCCcchhhhhhcccCCcCCccEEEc
Q 045139 276 SSN-KLQGPIPDSAFPNPT-SLSYLDLSNNQLVSVPKSFRNLCRLRALYQDS-NNLTDLLPNLFLKLSNCSRDTLEILQL 352 (820)
Q Consensus 276 s~n-~l~g~ip~~~l~~l~-~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~~~~~~L~~L~L 352 (820)
.++ .+. .++...|..+. .+++|++++|+++.+|.......+|+++++.+ |.++.+.+..|..++ +|+.|++
T Consensus 136 ~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~-----~L~~LdL 209 (350)
T 4ay9_X 136 QDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS-----GPVILDI 209 (350)
T ss_dssp ESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE-----CCSEEEC
T ss_pred ccccccc-cccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCc-----ccchhhc
Confidence 764 565 78877687775 68999999999999998877778999999975 777777778899998 9999999
Q ss_pred CCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCc
Q 045139 353 NSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNS 413 (820)
Q Consensus 353 ~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 413 (820)
++|+++...+. .+.+|+.|.+.+ .+.+. .+| .+..+++|+.+++.++.
T Consensus 210 s~N~l~~lp~~--~~~~L~~L~~l~---------~~~l~-~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 210 SRTRIHSLPSY--GLENLKKLRARS---------TYNLK-KLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp TTSCCCCCCSS--SCTTCCEEECTT---------CTTCC-CCC-CTTTCCSCCEEECSCHH
T ss_pred CCCCcCccChh--hhccchHhhhcc---------CCCcC-cCC-CchhCcChhhCcCCCCc
Confidence 99999954433 355666655432 12232 556 48889999999998754
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.2e-18 Score=173.95 Aligned_cols=117 Identities=21% Similarity=0.304 Sum_probs=60.3
Q ss_pred cEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCc
Q 045139 598 TVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRS 677 (820)
Q Consensus 598 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~ 677 (820)
+.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|+|++|++++..|..+. .+++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT-TCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh-CCcCCCEEECCC
Confidence 45666666665 3444332 4555555555555555444555555555555555555544444444 455555555555
Q ss_pred ccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139 678 NNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM 718 (820)
Q Consensus 678 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 718 (820)
|++++..+..|..+++|+.|+|++|++++..|..|.+++.|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 130 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL 130 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC
Confidence 55553333334445555555555555554444444444443
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=6e-19 Score=190.66 Aligned_cols=130 Identities=24% Similarity=0.191 Sum_probs=88.1
Q ss_pred ccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcc-cccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 573 FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMD-FNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 573 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
-+.++++++.++ .+|..+. +.++.|+|++|++++..+..+. .+++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 357777777777 4565443 4567777777777766666666 67777777777777776666667777777777777
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCcc
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG 706 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 706 (820)
+|++++..+..+. .+++|++|+|++|++++..|..|..+++|+.|+|++|++++
T Consensus 97 ~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 97 SNHLHTLDEFLFS-DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp SSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCcCCcCCHHHhC-CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 7777644444444 56777777777777766666666666677777777666663
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=2.9e-18 Score=172.33 Aligned_cols=154 Identities=21% Similarity=0.254 Sum_probs=105.1
Q ss_pred CcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcC
Q 045139 597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR 676 (820)
Q Consensus 597 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~ 676 (820)
.+.++.+++++. .+|..+. ++|++|++++|.+++..|..|..+++|++|+|++|++++..+..+. .+++|++|+|+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~-~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD-SLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc-cCCCcCEEECC
Confidence 456788888776 5665443 6777788888777777777777777777777777777633333333 67777777777
Q ss_pred cccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeecccccccccc
Q 045139 677 SNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTL 756 (820)
Q Consensus 677 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 756 (820)
+|++++..+..+..+++|+.|++++|+++ .+|..+.++++|
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L-------------------------------------- 137 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL-------------------------------------- 137 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC--------------------------------------
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCC--------------------------------------
Confidence 77777665566677777777777777776 566666655555
Q ss_pred CceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCC
Q 045139 757 GLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPI 796 (820)
Q Consensus 757 ~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~i 796 (820)
+.|||++|++++..+ .+..+++|+.|++++|.+.+..
T Consensus 138 ---~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 138 ---THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp ---SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ---CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 667777777764444 5666777777777777766543
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.5e-18 Score=170.12 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=111.4
Q ss_pred ccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCC
Q 045139 616 DFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQ 695 (820)
Q Consensus 616 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 695 (820)
+.+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+ ..+. .+++|++|++++|++++..|..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhh-cCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 45566666666666666 344 5667777777777777654 22 3454 577888888888888776777788888888
Q ss_pred EEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCC
Q 045139 696 VLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPE 775 (820)
Q Consensus 696 ~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~ 775 (820)
+|++++|++++..|..+.+++.| +.|++++|++.+.+|.
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L-----------------------------------------~~L~L~~n~~i~~~~~ 154 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKV-----------------------------------------NSIDLSYNGAITDIMP 154 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSC-----------------------------------------CEEECCSCTBCCCCGG
T ss_pred EEEecCCccCcHhHHHHhhCCCC-----------------------------------------CEEEccCCCCccccHh
Confidence 88888888887777777777666 7888888873346777
Q ss_pred cccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCcc
Q 045139 776 VTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMR 818 (820)
Q Consensus 776 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g 818 (820)
+..+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus 155 l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 155 LKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred hcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 8888888888888888885 44 67888888888888888865
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=4.4e-18 Score=169.85 Aligned_cols=142 Identities=20% Similarity=0.233 Sum_probs=103.5
Q ss_pred ccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCC-CCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 573 FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIP-DSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 573 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
-+.+++++|.++ .+|..+. +.+++|++++|++++..| ..|..+++|++|++++|++++..+..|.++++|++|+|+
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 357777777776 4565443 346778888888776644 456777778888888888777777777777888888888
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM 718 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 718 (820)
+|++++..|..+. .+++|++|+|++|++++..|..+..+++|+.|+|++|++++..|..|..++.|
T Consensus 90 ~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 155 (220)
T 2v70_A 90 SNRLENVQHKMFK-GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155 (220)
T ss_dssp SSCCCCCCGGGGT-TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred CCccCccCHhHhc-CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence 8887765555555 67788888888888877777777777888888888888877667777776666
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1.1e-18 Score=199.75 Aligned_cols=169 Identities=26% Similarity=0.317 Sum_probs=121.1
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+|+.|++++|.+.. +| .+..+++|+.|+|++|++.+..| +..+++|+.|+|++|.+.+ +| .+..+++|++|+|+
T Consensus 44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence 67777777777763 33 47777778888888887775444 7777778888888887775 23 57777778888888
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
+|++.+ +| .+. .+++|+.|+|++|++++. ..+..+++|+.|+|++|++++..| +..++.|
T Consensus 118 ~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L------------- 177 (605)
T 1m9s_A 118 HNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL------------- 177 (605)
T ss_dssp TSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTC-------------
T ss_pred CCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCC-------------
Confidence 887774 33 344 577788888888877754 567777778888888887776555 5555555
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccC
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGP 795 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ 795 (820)
+.|+|++|++++ +|.+..+++|+.|+|++|.+++.
T Consensus 178 ----------------------------~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 178 ----------------------------QNLYLSKNHISD-LRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ----------------------------CEEECCSSCCCB-CGGGTTCTTCSEEECCSEEEECC
T ss_pred ----------------------------CEEECcCCCCCC-ChHHccCCCCCEEEccCCcCcCC
Confidence 778888887773 56777777888888888877754
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=2.1e-18 Score=180.14 Aligned_cols=187 Identities=22% Similarity=0.362 Sum_probs=122.2
Q ss_pred EEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCc
Q 045139 575 YLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNK 654 (820)
Q Consensus 575 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 654 (820)
.+.+..+.+++..+ +..+++|++|++++|.+.+ ++ .++.+++|++|++++|++++..+ +..+++|++|++++|+
T Consensus 28 ~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 28 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred HHHhcCCCcccccc--hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence 34455555543322 3456777777777777764 33 36777777777777777775443 7777777777777777
Q ss_pred CccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCcc
Q 045139 655 ISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRT 734 (820)
Q Consensus 655 l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~ 734 (820)
+++ +|. +. .+++|++|++++|++++. ..+..+++|+.|++++|++++. ..+..++.|
T Consensus 102 l~~-~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L---------------- 158 (291)
T 1h6t_A 102 VKD-LSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL---------------- 158 (291)
T ss_dssp CCC-GGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC----------------
T ss_pred CCC-Chh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC----------------
Confidence 764 333 44 577777777777777653 3566777777777777777643 344554444
Q ss_pred ccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCC
Q 045139 735 DYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN 814 (820)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N 814 (820)
+.|++++|++++..| +..+++|+.|++++|++++ +|. +..+++|+.||+++|
T Consensus 159 -------------------------~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 159 -------------------------DTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp -------------------------SEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEE
T ss_pred -------------------------CEEEccCCccccchh-hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCC
Confidence 677777777764444 6677777777777777764 343 677777777777777
Q ss_pred cCcc
Q 045139 815 MLMR 818 (820)
Q Consensus 815 ~l~g 818 (820)
++++
T Consensus 211 ~i~~ 214 (291)
T 1h6t_A 211 ECLN 214 (291)
T ss_dssp EEEC
T ss_pred cccC
Confidence 7653
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=6.1e-18 Score=168.78 Aligned_cols=141 Identities=21% Similarity=0.262 Sum_probs=108.7
Q ss_pred cEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCC
Q 045139 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHN 653 (820)
Q Consensus 574 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 653 (820)
+.++++++.++ .+|..+. +++++|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56778888777 5565544 67888888888888777777888888888888888888777888888888888888888
Q ss_pred cCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139 654 KISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM 718 (820)
Q Consensus 654 ~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 718 (820)
+++ .+|..++..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..++.|
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence 887 4554433368888888888888887777888888888888888888886666667766666
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=3.7e-18 Score=184.43 Aligned_cols=144 Identities=22% Similarity=0.141 Sum_probs=78.0
Q ss_pred cccEEEccCCccccccCcccc-cCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEEC
Q 045139 572 HFRYLDLSDNLLSGELPNCSK-NWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDL 650 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 650 (820)
.++.|++++|++++..+..+. ++++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..|.++++|++|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 455566666665555555454 5556666666666665555555555566666666666655555555555566666666
Q ss_pred CCCcCccccCcchhcCCCCccEEEcCcccccccCCccc---CCCCCCCEEeCcCCCCccccchhccccc
Q 045139 651 GHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV---CHLQRIQVLDLSQNNISGTVPQCLNNLT 716 (820)
Q Consensus 651 s~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 716 (820)
++|+|++..|..+. .+++|+.|+|++|++++..+..+ ..+++|+.|||++|++++..+..+..++
T Consensus 120 ~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 120 YNNHIVVVDRNAFE-DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187 (361)
T ss_dssp CSSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred CCCcccEECHHHhC-CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence 66666544444444 45566666666666553222222 3455566666666655533333444443
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=6.2e-18 Score=193.57 Aligned_cols=148 Identities=28% Similarity=0.314 Sum_probs=83.3
Q ss_pred CCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEE
Q 045139 545 PLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSL 624 (820)
Q Consensus 545 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 624 (820)
+..++.|++++|.+.... .+.... +|+.|+|++|.+++..| +..+++|+.|+|++|++.+ +| .+..+++|+.|
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~--~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLP--NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCT--TCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred CCCCCEEECcCCCCCCCh-HHccCC--CCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 345555566666554432 221111 56666666666654433 5566666666666666653 22 45666666666
Q ss_pred eccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCC
Q 045139 625 HLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNI 704 (820)
Q Consensus 625 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 704 (820)
+|++|++.+. ..+..+++|+.|+|++|++++. ..+. .+++|+.|+|++|++.+..| +..+++|+.|+|++|++
T Consensus 115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 6666666542 3456666666666666666543 3343 46666666666666665444 56666666666666666
Q ss_pred cc
Q 045139 705 SG 706 (820)
Q Consensus 705 ~~ 706 (820)
++
T Consensus 188 ~~ 189 (605)
T 1m9s_A 188 SD 189 (605)
T ss_dssp CB
T ss_pred CC
Confidence 54
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=3.2e-19 Score=209.63 Aligned_cols=195 Identities=23% Similarity=0.234 Sum_probs=125.4
Q ss_pred ccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCC
Q 045139 573 FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGH 652 (820)
Q Consensus 573 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 652 (820)
+..++++.|.+. ..|+.+..++.|+.|+|++|++. .+|..+..+++|++|+|++|.|+ .+|..++++++|++|+|++
T Consensus 203 i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 203 IDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTT
T ss_pred ccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcC
Confidence 445566667666 67888999999999999999998 78888889999999999999999 8899999999999999999
Q ss_pred CcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCC
Q 045139 653 NKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPL 732 (820)
Q Consensus 653 N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~ 732 (820)
|+|+ .+|..++ .+++|++|+|++|.++ .+|..|+.+++|+.|+|++|++++.+|..+..+....
T Consensus 280 N~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~------------- 343 (727)
T 4b8c_D 280 NRLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTG------------- 343 (727)
T ss_dssp SCCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHH-------------
T ss_pred CcCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhh-------------
Confidence 9999 8899998 7999999999999998 7898899999999999999999999998887654320
Q ss_pred ccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCC--------ccccCCcccccCCC
Q 045139 733 RTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKN--------SLTGPIPSKIGGLT 804 (820)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N--------~l~~~ip~~l~~l~ 804 (820)
..++|++|.++|.+| ..|+.|++++| .+.+.++..+..+.
T Consensus 344 ---------------------------~~l~l~~N~l~~~~p-----~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~ 391 (727)
T 4b8c_D 344 ---------------------------LIFYLRDNRPEIPLP-----HERRFIEINTDGEPQREYDSLQQSTEHLATDLA 391 (727)
T ss_dssp ---------------------------HHHHHHHCCCCCCCC-----CC-------------------------------
T ss_pred ---------------------------hHHhhccCcccCcCc-----cccceeEeecccccccccCCccccccchhhccc
Confidence 236788888888877 23445666666 45555555566677
Q ss_pred CCCeEeCCCCcCcc
Q 045139 805 LLNSLDLSKNMLMR 818 (820)
Q Consensus 805 ~L~~LdLs~N~l~g 818 (820)
.++...+++|-+.+
T Consensus 392 ~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 392 KRTFTVLSYNTLCQ 405 (727)
T ss_dssp ----------CCCG
T ss_pred ccceeeeecccccc
Confidence 77778888887753
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.4e-18 Score=178.55 Aligned_cols=168 Identities=20% Similarity=0.299 Sum_probs=138.5
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
.+..+++++|.+++.. .+..+++|++|++++|+++. +| .++.+++|++|++++|++++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 6777888999888543 57889999999999999984 55 78889999999999999987554 8899999999999
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
+|++++ +|.. . . ++|+.|++++|++++. ..+..+++|+.|++++|++++. | .+..++.|
T Consensus 94 ~N~l~~-l~~~-~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L------------- 152 (263)
T 1xeu_A 94 RNRLKN-LNGI-P-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKL------------- 152 (263)
T ss_dssp SSCCSC-CTTC-C-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTC-------------
T ss_pred CCccCC-cCcc-c-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCC-------------
Confidence 999985 5543 2 3 8899999999999863 3588899999999999999853 3 46666655
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccC
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGP 795 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ 795 (820)
+.|++++|++++. +.+..+++|+.|++++|.+++.
T Consensus 153 ----------------------------~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 153 ----------------------------EVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ----------------------------CEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred ----------------------------CEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 8899999999855 7888899999999999999865
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=3.1e-17 Score=164.81 Aligned_cols=157 Identities=23% Similarity=0.244 Sum_probs=135.9
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
.-+.++.+++.++ .+|..+. ++|++|++++|++++..|..|..+++|++|+|++|++.+..+..|..+++|++|+|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4578999999987 6776554 889999999999999889999999999999999999987777778999999999999
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
+|++++..+..+. .+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..+..++.|
T Consensus 97 ~N~l~~l~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------- 161 (229)
T 3e6j_A 97 TNQLTVLPSAVFD-RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL------------- 161 (229)
T ss_dssp SSCCCCCCTTTTT-TCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCcCCccChhHhC-cchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC-------------
Confidence 9999965555555 7999999999999999 788899999999999999999996666677777776
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP 774 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip 774 (820)
+.|+|++|++++..+
T Consensus 162 ----------------------------~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 162 ----------------------------THAYLFGNPWDCECR 176 (229)
T ss_dssp ----------------------------CEEECTTSCBCTTBG
T ss_pred ----------------------------CEEEeeCCCccCCcc
Confidence 889999999986554
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=9.4e-18 Score=164.50 Aligned_cols=156 Identities=15% Similarity=0.252 Sum_probs=124.3
Q ss_pred cccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCc
Q 045139 591 SKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDL 670 (820)
Q Consensus 591 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L 670 (820)
...+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|++++..|..+. .+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhc-CCCCC
Confidence 366778888888888888 556 6888888999999888665 335788889999999999999877788887 78999
Q ss_pred cEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeecccc
Q 045139 671 VVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDS 750 (820)
Q Consensus 671 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (820)
++|++++|++++..|..+..+++|+.|++++|++.+.+| .+.+++.|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L-------------------------------- 161 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPEL-------------------------------- 161 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSC--------------------------------
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCC--------------------------------
Confidence 999999999988788888899999999999998333555 46666655
Q ss_pred ccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCcccc
Q 045139 751 EYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTG 794 (820)
Q Consensus 751 ~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~ 794 (820)
+.|++++|+++ .++.+..+++|+.|++++|++.+
T Consensus 162 ---------~~L~l~~n~i~-~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 162 ---------KSLNIQFDGVH-DYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ---------CEEECTTBCCC-CCTTGGGCSSCCEEEECBC----
T ss_pred ---------CEEECCCCCCc-ChHHhccCCCCCEEEeeCcccCC
Confidence 88999999998 46688889999999999998864
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=1.3e-19 Score=206.18 Aligned_cols=192 Identities=21% Similarity=0.220 Sum_probs=153.7
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCe-------------eeecCCCCcccccCCcEEe-ccCCcccccCCc
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNK-------------FSGKIPDSMDFNCMMLSLH-LRNNSFIGELPS 637 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~l~~l~~L~~L~-Ls~N~l~~~~p~ 637 (820)
+++.|++++|+++ .+|..++.+++|++|++++|. +.+.+|..++.+++|+.|+ ++.|.+......
T Consensus 350 ~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 7889999999997 789999999999999998775 5567777888888888888 565544311000
Q ss_pred -----chhc--CCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccch
Q 045139 638 -----SVKS--FTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQ 710 (820)
Q Consensus 638 -----~l~~--l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 710 (820)
.+.. ...|+.|++++|++++ +|. +. .+++|+.|+|++|+++ .+|..++.+++|+.|+|++|++++ +|
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp- 502 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD- 502 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-
T ss_pred hhhcccccccCccCceEEEecCCCCCC-CcC-cc-ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-
Confidence 0111 1258899999999985 776 66 7999999999999999 788999999999999999999986 67
Q ss_pred hccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecC-C-CcccccCCCEEeCC
Q 045139 711 CLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEI-P-EVTSLVGLISLNLS 788 (820)
Q Consensus 711 ~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~i-p-~l~~l~~L~~L~Ls 788 (820)
.+++++.| +.|||++|++++.+ | .++.+++|+.|+|+
T Consensus 503 ~l~~l~~L-----------------------------------------~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 503 GVANLPRL-----------------------------------------QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp GGTTCSSC-----------------------------------------CEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred ccCCCCCC-----------------------------------------cEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 77777777 88999999999776 8 89999999999999
Q ss_pred CCccccCCccc---ccCCCCCCeEeC
Q 045139 789 KNSLTGPIPSK---IGGLTLLNSLDL 811 (820)
Q Consensus 789 ~N~l~~~ip~~---l~~l~~L~~LdL 811 (820)
+|.+++.+|.. +..+++|+.||+
T Consensus 542 ~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 542 GNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999776532 334788999875
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=1.2e-19 Score=206.67 Aligned_cols=181 Identities=20% Similarity=0.211 Sum_probs=156.8
Q ss_pred ccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCc-------------ccccCCcchhcCCCCCEEE-CCCCcCcc
Q 045139 592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS-------------FIGELPSSVKSFTQLTVLD-LGHNKISG 657 (820)
Q Consensus 592 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-------------l~~~~p~~l~~l~~L~~L~-Ls~N~l~~ 657 (820)
..++.|+.|+|++|++. .+|..++.+++|+.|++++|. +.+.+|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56789999999999998 789999999999999998875 6678888999999999999 6776544
Q ss_pred ccCc------chhc-CCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCccccc
Q 045139 658 IIPA------WIGD-SLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRY 730 (820)
Q Consensus 658 ~~p~------~l~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~ 730 (820)
.++. .+.. ....|+.|+|++|++++ +|. ++.+++|+.|+|++|+++ .+|..+++++.|
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L------------ 488 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL------------ 488 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC------------
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC------------
Confidence 2221 0100 12368999999999996 676 999999999999999999 889999988888
Q ss_pred CCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCC-cccccCCCCCCeE
Q 045139 731 PLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPI-PSKIGGLTLLNSL 809 (820)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L 809 (820)
+.|+|++|++++ +|.++.+++|+.|+|++|++++.+ |..|+.+++|+.|
T Consensus 489 -----------------------------~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 489 -----------------------------EVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp -----------------------------CEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred -----------------------------CEEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 899999999995 789999999999999999999887 9999999999999
Q ss_pred eCCCCcCccc
Q 045139 810 DLSKNMLMRA 819 (820)
Q Consensus 810 dLs~N~l~g~ 819 (820)
||++|+|+|.
T Consensus 539 ~L~~N~l~~~ 548 (567)
T 1dce_A 539 NLQGNSLCQE 548 (567)
T ss_dssp ECTTSGGGGS
T ss_pred EecCCcCCCC
Confidence 9999999885
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.3e-17 Score=169.38 Aligned_cols=155 Identities=22% Similarity=0.266 Sum_probs=104.2
Q ss_pred cceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEec
Q 045139 547 TVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHL 626 (820)
Q Consensus 547 ~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 626 (820)
.+..+++..+.+.+... ..... +|++|++++|.++ .+| .+..+++|++|++++|++++..+ ++.+++|++|++
T Consensus 20 ~l~~l~l~~~~i~~~~~-~~~l~--~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVS-QKELS--GVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEEC-HHHHT--TCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCcccccc-hhhcC--cCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 44555666666655432 11111 6788888888777 344 57777888888888888875444 777888888888
Q ss_pred cCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCcc
Q 045139 627 RNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG 706 (820)
Q Consensus 627 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 706 (820)
++|++++. |. +.. ++|++|++++|++++ +| .+. .+++|++|++++|++++. | .+..+++|+.|++++|++++
T Consensus 93 ~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~-~l~-~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 93 NRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD-SLI-HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG-GGT-TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch-hhc-CcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 88888753 32 222 778888888888874 34 354 678888888888888754 3 57777888888888888775
Q ss_pred ccchhccccccc
Q 045139 707 TVPQCLNNLTAM 718 (820)
Q Consensus 707 ~~p~~l~~l~~L 718 (820)
. ..+..++.|
T Consensus 165 ~--~~l~~l~~L 174 (263)
T 1xeu_A 165 T--GGLTRLKKV 174 (263)
T ss_dssp C--TTSTTCCCC
T ss_pred h--HHhccCCCC
Confidence 4 445554444
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=3.1e-17 Score=159.96 Aligned_cols=134 Identities=24% Similarity=0.282 Sum_probs=111.5
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCC-CcccccCCcEEeccCCcccccCCcchhcCCCCCEEEC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPD-SMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDL 650 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 650 (820)
.-+++++++|.++ .+|..+. .++++|++++|++++..+. .|+.+++|++|++++|++++..|..|.++++|++|+|
T Consensus 9 ~~~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 9 EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 3478999999986 6776554 3889999999999876664 4888899999999999998888888888999999999
Q ss_pred CCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccc
Q 045139 651 GHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP 709 (820)
Q Consensus 651 s~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 709 (820)
++|++++..|..+. .+++|++|+|++|++++..|..+..+++|+.|++++|++.+..+
T Consensus 86 s~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 86 GENKIKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSCCCCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999877777676 68889999999999988888888888889999999988886654
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=6.7e-17 Score=157.53 Aligned_cols=93 Identities=26% Similarity=0.358 Sum_probs=42.8
Q ss_pred cEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcc-hhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCc
Q 045139 622 LSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAW-IGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLS 700 (820)
Q Consensus 622 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 700 (820)
+++++++|.++ .+|..+.. +|++|++++|++++..+.. +. .+++|++|+|++|++++..|..|..+++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFG-RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGG-GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccc-cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 44555555553 33433322 4555555555554333321 32 44555555555555554444445555555555555
Q ss_pred CCCCccccchhccccccc
Q 045139 701 QNNISGTVPQCLNNLTAM 718 (820)
Q Consensus 701 ~N~l~~~~p~~l~~l~~L 718 (820)
+|++++..|..|.+++.|
T Consensus 87 ~N~l~~~~~~~~~~l~~L 104 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQL 104 (192)
T ss_dssp SCCCCEECSSSSTTCTTC
T ss_pred CCcCCccCHHHhcCCCCC
Confidence 555544444444444333
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=6.3e-18 Score=198.62 Aligned_cols=235 Identities=16% Similarity=0.114 Sum_probs=131.2
Q ss_pred CCHHHHHHHHHhhccCC-CCCCCCCCCCCCCCCCCCcccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCE
Q 045139 41 CIERERQALLMFKQGLI-DEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNY 119 (820)
Q Consensus 41 ~~~~~~~~l~~~~~~~~-~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~ 119 (820)
....++++|+++..... .....-..|.. .....+.|.+++++ .++++.++|.+ +.+.. ++..+.....|+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s--~~~~~~l~L~~---n~~~~-~~~~~l~~l~Ls~ 200 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVS--TPLTPKIELFA---NGKDE-ANQALLQHKKLSQ 200 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceec--CCccceEEeeC---CCCCc-chhhHhhcCccCc
Confidence 45567889999876653 12233346653 34556789998885 46899999987 55554 3443333333333
Q ss_pred E-----ECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCee
Q 045139 120 L-----NMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYV 194 (820)
Q Consensus 120 L-----~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 194 (820)
+ +++.|.+. ..|..+..++.|++|+|++|.+. .+|..+..+++|++|+|++| .+ ...+..++++++|++|
T Consensus 201 ~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N-~l-~~lp~~~~~l~~L~~L 275 (727)
T 4b8c_D 201 YSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN-SL-TELPAEIKNLSNLRVL 275 (727)
T ss_dssp -----------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS-CC-SCCCGGGGGGTTCCEE
T ss_pred ccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC-cC-cccChhhhCCCCCCEE
Confidence 2 23333332 15777889999999999999998 88888889999999999999 23 3556778999999999
Q ss_pred eCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEE
Q 045139 195 RLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLD 274 (820)
Q Consensus 195 ~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~ 274 (820)
+|++|.++. +|..++++++|++|+|++|.++. +| ..++.+ ++|++|+|++|.+++.+|..+.........++
T Consensus 276 ~Ls~N~l~~---lp~~~~~l~~L~~L~L~~N~l~~-lp---~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 276 DLSHNRLTS---LPAELGSCFQLKYFYFFDNMVTT-LP---WEFGNL-CNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp ECTTSCCSS---CCSSGGGGTTCSEEECCSSCCCC-CC---SSTTSC-TTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred eCcCCcCCc---cChhhcCCCCCCEEECCCCCCCc-cC---hhhhcC-CCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence 999999985 57788999999999999999974 45 457777 99999999999999999988876542445688
Q ss_pred ccCCcccCCCCCCCCCCCCCCCEEECCCC
Q 045139 275 LSSNKLQGPIPDSAFPNPTSLSYLDLSNN 303 (820)
Q Consensus 275 Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n 303 (820)
+++|.++|.+|.. |+.|+++.|
T Consensus 348 l~~N~l~~~~p~~-------l~~l~l~~n 369 (727)
T 4b8c_D 348 LRDNRPEIPLPHE-------RRFIEINTD 369 (727)
T ss_dssp HHHCCCCCCCCCC----------------
T ss_pred hccCcccCcCccc-------cceeEeecc
Confidence 9999999888765 566777766
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=148.15 Aligned_cols=127 Identities=28% Similarity=0.376 Sum_probs=69.5
Q ss_pred CEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCC
Q 045139 646 TVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSN 725 (820)
Q Consensus 646 ~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~ 725 (820)
+.+++++|.++ .+|..+ .++|++|++++|+++ .+|..+..+++|+.|++++|++++..|..|.+++.|
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L------- 80 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL------- 80 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence 34555555554 444433 235555555555555 444555555555555555555555444455555444
Q ss_pred cccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCC
Q 045139 726 AMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLT 804 (820)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 804 (820)
+.|||++|++++..| .+..+++|+.|+|++|++++..+..|..++
T Consensus 81 ----------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (193)
T 2wfh_A 81 ----------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126 (193)
T ss_dssp ----------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred ----------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc
Confidence 555666666554444 555566666666666666644444555566
Q ss_pred CCCeEeCCCCcCcc
Q 045139 805 LLNSLDLSKNMLMR 818 (820)
Q Consensus 805 ~L~~LdLs~N~l~g 818 (820)
+|+.|++++|++.+
T Consensus 127 ~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 127 ALSHLAIGANPLYC 140 (193)
T ss_dssp TCCEEECCSSCEEC
T ss_pred cccEEEeCCCCeec
Confidence 66666666666543
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=7.9e-16 Score=146.55 Aligned_cols=135 Identities=21% Similarity=0.203 Sum_probs=120.5
Q ss_pred cccEEEccCCccc-cccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEEC
Q 045139 572 HFRYLDLSDNLLS-GELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDL 650 (820)
Q Consensus 572 ~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 650 (820)
+++.|++++|.++ +.+|..+..+++|++|++++|++++. ..++.+++|++|++++|++++.+|..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 8999999999998 78898899999999999999999865 78999999999999999999888988889999999999
Q ss_pred CCCcCccccC-cchhcCCCCccEEEcCcccccccCC---cccCCCCCCCEEeCcCCCCccccch
Q 045139 651 GHNKISGIIP-AWIGDSLPDLVVLSLRSNNFHGRVP---VQVCHLQRIQVLDLSQNNISGTVPQ 710 (820)
Q Consensus 651 s~N~l~~~~p-~~l~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p~ 710 (820)
++|++++..+ ..+. .+++|++|++++|++++..+ ..+..+++|+.|++++|.+. .+|.
T Consensus 103 s~N~l~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 103 SGNKLKDISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp BSSSCCSSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred cCCccCcchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 9999985322 5666 79999999999999996555 48899999999999999987 4554
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=8.1e-16 Score=146.47 Aligned_cols=131 Identities=24% Similarity=0.224 Sum_probs=73.2
Q ss_pred CCCCEEECCCCcCc-cccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcccccccccc
Q 045139 643 TQLTVLDLGHNKIS-GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTAN 721 (820)
Q Consensus 643 ~~L~~L~Ls~N~l~-~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~ 721 (820)
++|++|++++|+++ +.+|..+. .+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+.+++.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--- 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL--- 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC---
T ss_pred ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC---
Confidence 44555555555554 44554443 455555555555555533 455555666666666666655555555545444
Q ss_pred ccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecC--CCcccccCCCEEeCCCCccccCCc--
Q 045139 722 KSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEI--PEVTSLVGLISLNLSKNSLTGPIP-- 797 (820)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~i--p~l~~l~~L~~L~Ls~N~l~~~ip-- 797 (820)
+.|++++|++++.. +.+..+++|++|++++|.+++..+
T Consensus 98 --------------------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 139 (168)
T 2ell_A 98 --------------------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139 (168)
T ss_dssp --------------------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH
T ss_pred --------------------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH
Confidence 55666666665421 255566666666666666664433
Q ss_pred -ccccCCCCCCeEeCCCCcCc
Q 045139 798 -SKIGGLTLLNSLDLSKNMLM 817 (820)
Q Consensus 798 -~~l~~l~~L~~LdLs~N~l~ 817 (820)
..+..+++|++||+++|.+.
T Consensus 140 ~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 140 ESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHHTTCSSCCEETTEETTSC
T ss_pred HHHHHhCccCcEecCCCCChh
Confidence 35566666666666666553
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=7.7e-16 Score=143.38 Aligned_cols=127 Identities=20% Similarity=0.247 Sum_probs=100.9
Q ss_pred CCCCEEECCCCcCc-cccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcccccccccc
Q 045139 643 TQLTVLDLGHNKIS-GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTAN 721 (820)
Q Consensus 643 ~~L~~L~Ls~N~l~-~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~ 721 (820)
++|+.|++++|.++ +.+|..+. .+++|++|++++|++++. ..+..+++|++|++++|++++.+|..+.+++.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L--- 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL--- 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC---
T ss_pred ccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC---
Confidence 56777888888777 67777665 678888888888887755 667788888888888888887777777777766
Q ss_pred ccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeec-CC-CcccccCCCEEeCCCCccccCCc--
Q 045139 722 KSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGE-IP-EVTSLVGLISLNLSKNSLTGPIP-- 797 (820)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~-ip-~l~~l~~L~~L~Ls~N~l~~~ip-- 797 (820)
+.||+++|++++. .| .++.+++|++|++++|.+++..+
T Consensus 91 --------------------------------------~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 132 (149)
T 2je0_A 91 --------------------------------------THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR 132 (149)
T ss_dssp --------------------------------------CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHH
T ss_pred --------------------------------------CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHH
Confidence 8889999988863 33 78888999999999999987666
Q ss_pred -ccccCCCCCCeEeCCC
Q 045139 798 -SKIGGLTLLNSLDLSK 813 (820)
Q Consensus 798 -~~l~~l~~L~~LdLs~ 813 (820)
..++.+++|++||+++
T Consensus 133 ~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 133 ENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHHCTTCCEETTBC
T ss_pred HHHHHHCCCcccccCCC
Confidence 5788899999999874
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.3e-15 Score=141.76 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=110.6
Q ss_pred cccEEEccCCccc-cccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEEC
Q 045139 572 HFRYLDLSDNLLS-GELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDL 650 (820)
Q Consensus 572 ~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 650 (820)
+++.|++++|.++ +.+|..+..+++|++|++++|++++. ..++.+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 7899999999998 78888889999999999999999865 77889999999999999999888888888999999999
Q ss_pred CCCcCccc-cCcchhcCCCCccEEEcCcccccccCC---cccCCCCCCCEEeCcC
Q 045139 651 GHNKISGI-IPAWIGDSLPDLVVLSLRSNNFHGRVP---VQVCHLQRIQVLDLSQ 701 (820)
Q Consensus 651 s~N~l~~~-~p~~l~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~ 701 (820)
++|++++. .|..+. .+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 96 s~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999863 336666 79999999999999987655 4788899999999874
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=6.8e-15 Score=141.34 Aligned_cols=93 Identities=19% Similarity=0.302 Sum_probs=41.2
Q ss_pred cEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcC
Q 045139 622 LSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQ 701 (820)
Q Consensus 622 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 701 (820)
+.+++++|+++. +|..+ .++|++|++++|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFD-KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhc-CcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 445555555442 23222 23455555555555432222233 345555555555555443333444455555555555
Q ss_pred CCCccccchhccccccc
Q 045139 702 NNISGTVPQCLNNLTAM 718 (820)
Q Consensus 702 N~l~~~~p~~l~~l~~L 718 (820)
|++++..+..+.+++.|
T Consensus 86 N~l~~~~~~~~~~l~~L 102 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQL 102 (177)
T ss_dssp SCCCCCCTTTTTTCTTC
T ss_pred CCccccCHHHhhCCccc
Confidence 55443333333433333
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=9.7e-15 Score=142.09 Aligned_cols=130 Identities=24% Similarity=0.247 Sum_probs=116.0
Q ss_pred ccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCC
Q 045139 573 FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGH 652 (820)
Q Consensus 573 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 652 (820)
-+.+++++|.++ .+|..+. ++|++|++++|+++ .+|..|..+++|++|++++|++++..+..|.++++|++|+|++
T Consensus 12 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 468999999998 6776553 68999999999998 6888999999999999999999998888999999999999999
Q ss_pred CcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccc
Q 045139 653 NKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGT 707 (820)
Q Consensus 653 N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 707 (820)
|++++..|..+. .+++|++|+|++|++++..+..|..+++|+.|++++|++...
T Consensus 88 N~l~~i~~~~f~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 88 NRLRCIPPRTFD-GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp SCCCBCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CccCEeCHHHhC-CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 999977777776 799999999999999977777899999999999999998753
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.2e-14 Score=139.73 Aligned_cols=134 Identities=21% Similarity=0.184 Sum_probs=117.1
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
..+.+++++++++ .+|..+ .++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|++|+++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4578999999998 556544 3789999999999998777788999999999999999998877888999999999999
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccc
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP 709 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 709 (820)
+|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 85 ~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFD-KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhh-CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999966655565 79999999999999997666667889999999999999998766
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=1.1e-14 Score=154.95 Aligned_cols=103 Identities=10% Similarity=0.022 Sum_probs=75.0
Q ss_pred cCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCC-EEECCCCcCccccCcchhcCCCCcc
Q 045139 593 NWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLT-VLDLGHNKISGIIPAWIGDSLPDLV 671 (820)
Q Consensus 593 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~~l~~L~ 671 (820)
.+++|+.+++++|+++...+.+|.++++|+.+++.+| +..+.+.+|.+|++|+ .+++.+ .++..-+..+. ++++|+
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~-~c~~L~ 300 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM-GCDNLR 300 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTT-TCTTEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhh-CCccCC
Confidence 3677888888877777666667777778888888777 6666667778888887 888877 66633334444 678888
Q ss_pred EEEcCcccccccCCcccCCCCCCCEEe
Q 045139 672 VLSLRSNNFHGRVPVQVCHLQRIQVLD 698 (820)
Q Consensus 672 ~L~L~~N~l~~~~p~~l~~l~~L~~L~ 698 (820)
.+++++|+++...+.+|.++++|+.++
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEeCCCccCccchhhhcCCcchhhhc
Confidence 888877887766667777788887775
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=8.2e-17 Score=157.90 Aligned_cols=160 Identities=19% Similarity=0.254 Sum_probs=84.6
Q ss_pred cccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCc
Q 045139 591 SKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDL 670 (820)
Q Consensus 591 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L 670 (820)
+.....++.++++.+.+.+.+|. + ..+|..+..+++|++|++++|++++ +| .+. .+++|
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~-----------------l-~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L 72 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPP-----------------I-EKMDATLSTLKACKHLALSTNNIEK-IS-SLS-GMENL 72 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTT-----------------C-CCCHHHHHHTTTCSEEECSEEEESC-CC-CHH-HHTTC
T ss_pred HHhcccccCcchheeEeccccCc-----------------H-hhhhHHHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCC
Confidence 34445566666666666655554 0 0112245555555555555555553 44 443 45555
Q ss_pred cEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeecccc
Q 045139 671 VVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDS 750 (820)
Q Consensus 671 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (820)
++|++++|+++ .+|..+..+++|+.|++++|++++ +| .+.+++.|
T Consensus 73 ~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L-------------------------------- 117 (198)
T 1ds9_A 73 RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL-------------------------------- 117 (198)
T ss_dssp CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS--------------------------------
T ss_pred CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC--------------------------------
Confidence 55555555555 344444445555666666665553 33 34444444
Q ss_pred ccccccCceEEEECCCCcCeecCC--CcccccCCCEEeCCCCccccCCccc----------ccCCCCCCeEeCCCCcCc
Q 045139 751 EYRNTLGLVKSIDLSSNRLYGEIP--EVTSLVGLISLNLSKNSLTGPIPSK----------IGGLTLLNSLDLSKNMLM 817 (820)
Q Consensus 751 ~~~~~l~~L~~LdLs~N~l~~~ip--~l~~l~~L~~L~Ls~N~l~~~ip~~----------l~~l~~L~~LdLs~N~l~ 817 (820)
+.|++++|++++..+ .+..+++|++|++++|.+++.+|.. +..+++|+.|| +|+++
T Consensus 118 ---------~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 ---------RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp ---------SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ---------CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 556666666653221 4555666666666666666554442 55666666665 55544
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.7e-14 Score=136.92 Aligned_cols=86 Identities=17% Similarity=0.123 Sum_probs=42.2
Q ss_pred cccccCCcEEeccCCcccccCCcchhcC-CCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCC
Q 045139 615 MDFNCMMLSLHLRNNSFIGELPSSVKSF-TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQR 693 (820)
Q Consensus 615 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 693 (820)
+..+++|+.|++++|+++. +|. +..+ ++|++|++++|++++. ..+. .+++|++|++++|++++..|..+..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFP-LLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCC-CCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccc-cCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3445555555555555553 232 2222 2555555555555532 2333 4555555555555555333333345555
Q ss_pred CCEEeCcCCCCc
Q 045139 694 IQVLDLSQNNIS 705 (820)
Q Consensus 694 L~~L~Ls~N~l~ 705 (820)
|+.|++++|+++
T Consensus 90 L~~L~L~~N~i~ 101 (176)
T 1a9n_A 90 LTELILTNNSLV 101 (176)
T ss_dssp CCEEECCSCCCC
T ss_pred CCEEECCCCcCC
Confidence 555555555553
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=7.8e-14 Score=148.44 Aligned_cols=216 Identities=13% Similarity=0.073 Sum_probs=151.2
Q ss_pred CCcceEEeccCccccc--ccchhhccccccccEEEccCCccccccCccccc--------CCCCcEEEcCCCeeeecCCCC
Q 045139 545 PLTVTSLILFKNMFSG--SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKN--------WQKLTVLNLANNKFSGKIPDS 614 (820)
Q Consensus 545 ~~~l~~l~l~~n~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~ 614 (820)
+.+++.|++++|.+.. ...... . .++.+.+..|.+ .+.+|.+ |++|+.++|.+ +++...+.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~--~--~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY--P--NGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS--G--GGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred hccCeEEecCcceeEEecCccccc--c--cccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence 4578888888887761 111000 0 123333333422 2344555 88888888888 777677778
Q ss_pred cccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCc--------------------------cccCcc------
Q 045139 615 MDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKIS--------------------------GIIPAW------ 662 (820)
Q Consensus 615 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--------------------------~~~p~~------ 662 (820)
|.++++|+.+++++|.+....+.+|.++.++..+..+.+... +.++..
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 888888888888888888777788888777777776653210 001100
Q ss_pred ---------------------hhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcccccccccc
Q 045139 663 ---------------------IGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTAN 721 (820)
Q Consensus 663 ---------------------l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~ 721 (820)
+...+++|+.++|++|+++...+.+|.++++|+.+++.+| +...-+.+|.++.+|
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L--- 275 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL--- 275 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC---
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc---
Confidence 0112678888888888888666677888888888888887 664445577777777
Q ss_pred ccCCcccccCCccccccCceeEEeeccccccccccCceE-EEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCccc
Q 045139 722 KSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVK-SIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSK 799 (820)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~ 799 (820)
+ .+++.+ +++..-+ .|..+++|+.+++++|+++...+..
T Consensus 276 --------------------------------------~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~a 316 (329)
T 3sb4_A 276 --------------------------------------AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDEL 316 (329)
T ss_dssp --------------------------------------CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTT
T ss_pred --------------------------------------cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhh
Confidence 7 899988 7773444 8999999999999999999877789
Q ss_pred ccCCCCCCeEeC
Q 045139 800 IGGLTLLNSLDL 811 (820)
Q Consensus 800 l~~l~~L~~LdL 811 (820)
|.++++|+.++.
T Consensus 317 F~~~~~L~~ly~ 328 (329)
T 3sb4_A 317 FGNGVPSKLIYK 328 (329)
T ss_dssp TCTTCCCCEEEC
T ss_pred hcCCcchhhhcc
Confidence 999999999864
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=9.9e-14 Score=132.99 Aligned_cols=128 Identities=18% Similarity=0.229 Sum_probs=109.5
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+++.|++++|+++ .+|......++|++|++++|++++. ..++.+++|++|++++|++++..+..+..+++|++|+++
T Consensus 20 ~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 20 RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp SCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 7899999999998 4565434344999999999999975 688999999999999999997766667999999999999
Q ss_pred CCcCccccCc--chhcCCCCccEEEcCcccccccCCcc----cCCCCCCCEEeCcCCCCc
Q 045139 652 HNKISGIIPA--WIGDSLPDLVVLSLRSNNFHGRVPVQ----VCHLQRIQVLDLSQNNIS 705 (820)
Q Consensus 652 ~N~l~~~~p~--~l~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~ 705 (820)
+|+++ .+|. .+. .+++|+.|++++|+++ .+|.. +..+++|+.||+++|...
T Consensus 97 ~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 97 NNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99996 6776 666 7999999999999998 56664 889999999999999875
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=3e-16 Score=153.89 Aligned_cols=133 Identities=19% Similarity=0.168 Sum_probs=109.1
Q ss_pred cccEEEccCCccccccCc------ccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCC
Q 045139 572 HFRYLDLSDNLLSGELPN------CSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQL 645 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 645 (820)
.++.++++.+.++|.+|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 678888888888888776 88999999999999999986 66 8888999999999999988 577778888899
Q ss_pred CEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCC-cccCCCCCCCEEeCcCCCCccccch
Q 045139 646 TVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVP-VQVCHLQRIQVLDLSQNNISGTVPQ 710 (820)
Q Consensus 646 ~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~ 710 (820)
++|++++|++++ +| .+. .+++|++|++++|++++..+ ..+..+++|+.|++++|++++.+|.
T Consensus 96 ~~L~L~~N~l~~-l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp SEEEEEEEECCC-HH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CEEECcCCcCCc-CC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 999999999985 55 455 68888889999888885332 4677888888888888888766554
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=3e-13 Score=128.58 Aligned_cols=106 Identities=22% Similarity=0.244 Sum_probs=75.2
Q ss_pred CCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccC
Q 045139 645 LTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSS 724 (820)
Q Consensus 645 L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~ 724 (820)
.+.+++++|.++ .+|..+ .++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|.++++|
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L------ 80 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL------ 80 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC------
Confidence 467888888877 577654 3677777888777777767777777777777777777775555556666655
Q ss_pred CcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccC
Q 045139 725 NAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGP 795 (820)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ 795 (820)
+.|+|++|+|++..| .+..+++|+.|+|++|.++..
T Consensus 81 -----------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 81 -----------------------------------TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp -----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred -----------------------------------CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 677777777775545 567777777777777777644
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=7e-13 Score=126.44 Aligned_cols=104 Identities=23% Similarity=0.287 Sum_probs=76.6
Q ss_pred CEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCC
Q 045139 646 TVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSN 725 (820)
Q Consensus 646 ~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~ 725 (820)
+.+++++|+++ .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|.+++.|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L------- 83 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL------- 83 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh-------
Confidence 67888888886 6776643 677888888888887777778888888888888888875444455666666
Q ss_pred cccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCcccc
Q 045139 726 AMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTG 794 (820)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~ 794 (820)
+.|||++|+|++..+ .+..+++|+.|+|++|.+..
T Consensus 84 ----------------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 84 ----------------------------------TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp ----------------------------------CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ----------------------------------hEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 778888888875444 47777788888888887774
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1.3e-12 Score=124.14 Aligned_cols=108 Identities=21% Similarity=0.248 Sum_probs=75.3
Q ss_pred CcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcC
Q 045139 597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR 676 (820)
Q Consensus 597 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~ 676 (820)
.+++++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..+. .+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~-~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD-KLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc-CCCCCCEEECC
Confidence 345666666665 3554442 5677777777777777677777777778888888877744444444 67788888888
Q ss_pred cccccccCCcccCCCCCCCEEeCcCCCCcccc
Q 045139 677 SNNFHGRVPVQVCHLQRIQVLDLSQNNISGTV 708 (820)
Q Consensus 677 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 708 (820)
+|++++..+..|..+++|+.|+|++|++....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 88887666666778888888888888887543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=2.8e-12 Score=122.25 Aligned_cols=105 Identities=21% Similarity=0.259 Sum_probs=74.7
Q ss_pred cEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCc
Q 045139 598 TVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRS 677 (820)
Q Consensus 598 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~ 677 (820)
+.+++++|++. .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..+. .+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD-KLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC-CcchhhEEECCC
Confidence 45666666664 4555443 6677777777777777777777778888888888888743333334 678888888888
Q ss_pred ccccccCCcccCCCCCCCEEeCcCCCCcc
Q 045139 678 NNFHGRVPVQVCHLQRIQVLDLSQNNISG 706 (820)
Q Consensus 678 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 706 (820)
|++++..+..+..+++|+.|+|++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 88886555567888888888888888874
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=5.6e-14 Score=151.28 Aligned_cols=184 Identities=13% Similarity=0.063 Sum_probs=128.8
Q ss_pred CCCCcEEEcCCCeeeecCCCCcccc-----cCCcEEeccCCcccccCCcch-hcCCCCCEEECCCCcCccccCcchh---
Q 045139 594 WQKLTVLNLANNKFSGKIPDSMDFN-----CMMLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIG--- 664 (820)
Q Consensus 594 l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~--- 664 (820)
++.|++|++++|.++......+... ++|++|+|++|.++......+ ..+++|++|+|++|.+++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4679999999999986544444433 689999999999975433333 3467899999999999865444442
Q ss_pred -cCCCCccEEEcCcccccc----cCCcccCCCCCCCEEeCcCCCCcccc----chhccccccccccccCCcccccCCccc
Q 045139 665 -DSLPDLVVLSLRSNNFHG----RVPVQVCHLQRIQVLDLSQNNISGTV----PQCLNNLTAMTANKSSNAMIRYPLRTD 735 (820)
Q Consensus 665 -~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~~~~~~~~~~~~~~~~ 735 (820)
...++|++|+|++|.++. .++..+...++|++|||++|+++..- +..+...+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~------------------ 212 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ------------------ 212 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC------------------
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC------------------
Confidence 246789999999999875 34455577889999999999987532 333333333
Q ss_pred cccCceeEEeeccccccccccCceEEEECCCCcCeec----CC-CcccccCCCEEeCCCCccccCCcccccCC---CC--
Q 045139 736 YYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGE----IP-EVTSLVGLISLNLSKNSLTGPIPSKIGGL---TL-- 805 (820)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l---~~-- 805 (820)
|+.|||++|.+++. ++ .+...++|++|||++|.|+......+..+ ..
T Consensus 213 -----------------------L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~ 269 (372)
T 3un9_A 213 -----------------------LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGG 269 (372)
T ss_dssp -----------------------CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------
T ss_pred -----------------------cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCcc
Confidence 48999999999753 33 44567899999999999986655555433 21
Q ss_pred CCeEe--CCCCcCcc
Q 045139 806 LNSLD--LSKNMLMR 818 (820)
Q Consensus 806 L~~Ld--Ls~N~l~g 818 (820)
|+.+. +..|.++.
T Consensus 270 L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 270 ARVVVSLTEGTAVSE 284 (372)
T ss_dssp CEEECCCC----CHH
T ss_pred chhhHhhhcCCccCH
Confidence 67777 77776653
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.33 E-value=5.3e-11 Score=129.87 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=21.5
Q ss_pred ccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCC
Q 045139 396 KSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHN 437 (820)
Q Consensus 396 ~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n 437 (820)
.+|.++++|+.+.+.++-. .++...|.++++|+.+++..+
T Consensus 156 ~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT
T ss_pred hhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC
Confidence 3455666666666654322 133445666666666665544
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.33 E-value=3.1e-11 Score=131.16 Aligned_cols=240 Identities=14% Similarity=0.174 Sum_probs=134.2
Q ss_pred CccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEc
Q 045139 244 SLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQ 323 (820)
Q Consensus 244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L 323 (820)
+|+.+.+..+ ++ .++...+..+ +|+.+.+.+ .++ .|+..+|.+|++|+.+++++|+++.++.....+.+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEe
Confidence 4666666544 32 3444444444 677777765 455 56666677777777777777777777665333567777777
Q ss_pred CCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCC
Q 045139 324 DSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLS 402 (820)
Q Consensus 324 ~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~ 402 (820)
.. .++.+...+|.++. +|+.+++..+ ++..... +.. .+|+.+.+ .+.++.....+|.+|+
T Consensus 211 p~-~l~~I~~~aF~~~~-----~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-----------p~~i~~I~~~aF~~c~ 271 (401)
T 4fdw_A 211 PV-TLKEIGSQAFLKTS-----QLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-----------PNGVTNIASRAFYYCP 271 (401)
T ss_dssp CT-TCCEECTTTTTTCT-----TCCCEECCTT-CCEECTTTTTT-CCCSEEEE-----------ETTCCEECTTTTTTCT
T ss_pred CC-chheehhhHhhCCC-----CCCEEecCCC-ccCcccccccc-CCccEEEe-----------CCCccEEChhHhhCCC
Confidence 63 36666666777666 6777777664 3322222 333 45555543 1233334455677777
Q ss_pred CCCEEecCCCcCc----cccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCcc
Q 045139 403 QLELLDVASNSLK----GMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFS 478 (820)
Q Consensus 403 ~L~~L~L~~n~l~----~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 478 (820)
+|+.+++.+|.+. ..++...|.++++|+.+++.. .+.......|..+.+|+.+.+..+ +...-..+|.++ +|+
T Consensus 272 ~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~ 348 (401)
T 4fdw_A 272 ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIK 348 (401)
T ss_dssp TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCC
T ss_pred CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCC
Confidence 7777777766554 124455677777777777763 344444444444555555555332 222233445555 566
Q ss_pred EEecCCCCccCCCCchhhccCCCcEEEEcCCC
Q 045139 479 ELDVSAAEISDTVPNWFWDLSPNLYYLNLSHN 510 (820)
Q Consensus 479 ~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n 510 (820)
.+++.+|......+..|..+..+++.+.+..+
T Consensus 349 ~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 349 EVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred EEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 66666655544433444333334445544443
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.31 E-value=5.4e-11 Score=129.22 Aligned_cols=194 Identities=9% Similarity=0.090 Sum_probs=98.8
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
+|+.+++++|+++.....+|. +.+|+.+.+..+ +......+|.++++|+.+++.++ ++..-..+|.+ .+|+.+++
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l- 255 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL- 255 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-
T ss_pred cCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-
Confidence 445555555555433333333 345555555433 44344445555555555555543 33333444444 45555555
Q ss_pred CCcCccccCcchhcCCCCccEEEcCccccc-----ccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCc
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFH-----GRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNA 726 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~ 726 (820)
.+.++ .++...+.++++|+.+++.+|.+. ..-+.+|.++++|+.+++. +.++..-..+|.+++.|
T Consensus 256 p~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L-------- 325 (401)
T 4fdw_A 256 PNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV-------- 325 (401)
T ss_dssp ETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC--------
T ss_pred CCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc--------
Confidence 23343 232222224555555555554443 2334455555666666655 23443333445554444
Q ss_pred ccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCC-
Q 045139 727 MIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLT- 804 (820)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~- 804 (820)
+.++|..| ++..-+ .|..+ +|+.+++++|.+....+..|.+++
T Consensus 326 ---------------------------------~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~ 370 (401)
T 4fdw_A 326 ---------------------------------TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPD 370 (401)
T ss_dssp ---------------------------------CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCT
T ss_pred ---------------------------------cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCC
Confidence 66666544 552223 66666 777777777777665566666663
Q ss_pred CCCeEeCCCCc
Q 045139 805 LLNSLDLSKNM 815 (820)
Q Consensus 805 ~L~~LdLs~N~ 815 (820)
.++.|.+..|.
T Consensus 371 ~l~~l~vp~~~ 381 (401)
T 4fdw_A 371 DITVIRVPAES 381 (401)
T ss_dssp TCCEEEECGGG
T ss_pred CccEEEeCHHH
Confidence 56677766554
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=1.1e-13 Score=149.12 Aligned_cols=181 Identities=17% Similarity=0.141 Sum_probs=128.0
Q ss_pred cccEEEccCCccccccCccccc-----CCCCcEEEcCCCeeeecCCCCc-ccccCCcEEeccCCcccccCCcch-----h
Q 045139 572 HFRYLDLSDNLLSGELPNCSKN-----WQKLTVLNLANNKFSGKIPDSM-DFNCMMLSLHLRNNSFIGELPSSV-----K 640 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l-----~ 640 (820)
.++.|++++|.++......+.. .++|++|+|++|.+++.....+ ..+++|++|+|++|.++......+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 7999999999998654444333 3799999999999975433333 346789999999999986544444 2
Q ss_pred cCCCCCEEECCCCcCccc----cCcchhcCCCCccEEEcCccccccc----CCcccCCCCCCCEEeCcCCCCccccch--
Q 045139 641 SFTQLTVLDLGHNKISGI----IPAWIGDSLPDLVVLSLRSNNFHGR----VPVQVCHLQRIQVLDLSQNNISGTVPQ-- 710 (820)
Q Consensus 641 ~l~~L~~L~Ls~N~l~~~----~p~~l~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~-- 710 (820)
..++|++|+|++|.+++. ++..+. ..++|++|+|++|.+... ++..+...++|+.|+|++|.++..-..
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLA-GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHH-TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHh-cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 468899999999999753 344445 688999999999998753 356677788999999999999854332
Q ss_pred --hccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-Ccccc---cC--C
Q 045139 711 --CLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSL---VG--L 782 (820)
Q Consensus 711 --~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l---~~--L 782 (820)
.+...+. |++|||++|.|++.-. .+..+ .. |
T Consensus 232 ~~~L~~~~~-----------------------------------------L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L 270 (372)
T 3un9_A 232 ARAAREHPS-----------------------------------------LELLHLYFNELSSEGRQVLRDLGGAAEGGA 270 (372)
T ss_dssp HHHHHHCSS-----------------------------------------CCEEECTTSSCCHHHHHHHHHCC------C
T ss_pred HHHHHhCCC-----------------------------------------CCEEeccCCCCCHHHHHHHHHHhcCCCccc
Confidence 3333333 4899999999975433 33322 22 7
Q ss_pred CEEe--CCCCcccc
Q 045139 783 ISLN--LSKNSLTG 794 (820)
Q Consensus 783 ~~L~--Ls~N~l~~ 794 (820)
+.+. +..|.++.
T Consensus 271 ~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 271 RVVVSLTEGTAVSE 284 (372)
T ss_dssp EEECCCC----CHH
T ss_pred hhhHhhhcCCccCH
Confidence 7777 77776653
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.28 E-value=1.8e-10 Score=125.72 Aligned_cols=326 Identities=12% Similarity=0.132 Sum_probs=180.7
Q ss_pred hhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcch-hhhccCCCcEEEcCCCCCCCcchhhhhhccc
Q 045139 263 LFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDLLPNLFLKLSN 341 (820)
Q Consensus 263 ~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 341 (820)
.|..+.+|+.+.+..+ ++ .|+..+|.++++|+.+++..+ ++.|+. .|.++.+|+.+.+..+ +......+|....
T Consensus 66 AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~- 140 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD- 140 (394)
T ss_dssp TTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC-
T ss_pred HhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc-
Confidence 3444447777777643 55 677777888888888888654 666654 4777777777666533 4444455555543
Q ss_pred CCcCCccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCH
Q 045139 342 CSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITE 420 (820)
Q Consensus 342 ~~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 420 (820)
.++......... .... +..+++|+.+.+.++ +.......|.++.+|+.+++..+ ++. ++.
T Consensus 141 ----~~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~-----------~~~I~~~~F~~c~~L~~i~l~~~-~~~-I~~ 201 (394)
T 4fs7_A 141 ----FKEITIPEGVTV--IGDEAFATCESLEYVSLPDS-----------METLHNGLFSGCGKLKSIKLPRN-LKI-IRD 201 (394)
T ss_dssp ----CSEEECCTTCCE--ECTTTTTTCTTCCEEECCTT-----------CCEECTTTTTTCTTCCBCCCCTT-CCE-ECT
T ss_pred ----ccccccCccccc--cchhhhcccCCCcEEecCCc-----------cceeccccccCCCCceEEEcCCC-ceE-eCc
Confidence 222222222211 1112 677788887766432 12233456788889999988776 433 555
Q ss_pred HHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCC
Q 045139 421 AHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSP 500 (820)
Q Consensus 421 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~ 500 (820)
..|.++..|+.+.+..+... +.. .......|+.+.+.... . .+....+..+.
T Consensus 202 ~~F~~~~~L~~i~~~~~~~~--i~~------------------------~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~ 253 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLYY--LGD------------------------FALSKTGVKNIIIPDSF-T-ELGKSVFYGCT 253 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCCE--ECT------------------------TTTTTCCCCEEEECTTC-C-EECSSTTTTCS
T ss_pred hhhccccccceeecCCCceE--eeh------------------------hhcccCCCceEEECCCc-e-ecccccccccc
Confidence 57888888888887665432 111 12223344444443221 1 12222222335
Q ss_pred CcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccC
Q 045139 501 NLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSD 580 (820)
Q Consensus 501 ~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~ 580 (820)
.++.+.+..+... .....+.... .++.+....
T Consensus 254 ~l~~~~~~~~~~~-i~~~~F~~~~-----------------------------------------------~l~~~~~~~ 285 (394)
T 4fs7_A 254 DLESISIQNNKLR-IGGSLFYNCS-----------------------------------------------GLKKVIYGS 285 (394)
T ss_dssp SCCEEEECCTTCE-ECSCTTTTCT-----------------------------------------------TCCEEEECS
T ss_pred cceeEEcCCCcce-eecccccccc-----------------------------------------------ccceeccCc
Confidence 6666665544221 0011011111 333333333
Q ss_pred CccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccC
Q 045139 581 NLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIP 660 (820)
Q Consensus 581 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 660 (820)
+.+ ....|..+.+|+.+.+..+ +...-..+|.++.+|+.+++.++ ++..-..+|.+|++|+.+++..+ ++ .|+
T Consensus 286 ~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~ 358 (394)
T 4fs7_A 286 VIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIG 358 (394)
T ss_dssp SEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EEC
T ss_pred eee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-Eeh
Confidence 322 2235666777777777654 44445566777777777777543 55555667777788888877766 55 444
Q ss_pred cchhcCCCCccEEEcCcccccccCCcccCCCCCCCEE
Q 045139 661 AWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVL 697 (820)
Q Consensus 661 ~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 697 (820)
...+.++++|+.+++..+ +. .+..+|.++++|+.+
T Consensus 359 ~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 333336778888877654 22 334567777777654
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=5.2e-11 Score=127.68 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=76.5
Q ss_pred EEECCCC-cCccccCcchhcCCCCccEEEcCc-ccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccC
Q 045139 647 VLDLGHN-KISGIIPAWIGDSLPDLVVLSLRS-NNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSS 724 (820)
Q Consensus 647 ~L~Ls~N-~l~~~~p~~l~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~ 724 (820)
.++++++ +++ .+|. +. .+++|+.|+|++ |++++..|..|..+++|+.|+|++|+|++..|..|.+++.|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L------ 82 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL------ 82 (347)
T ss_dssp CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC------
T ss_pred EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCC------
Confidence 4677777 777 5777 66 677888888885 88887777778888888888888888887777777777776
Q ss_pred CcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCcccc
Q 045139 725 NAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTG 794 (820)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~ 794 (820)
+.|||++|+|++..| .+..++ |+.|+|++|.+..
T Consensus 83 -----------------------------------~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 83 -----------------------------------SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp -----------------------------------CEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred -----------------------------------CEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 778888888875444 344444 8888888887763
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=1.9e-10 Score=123.24 Aligned_cols=105 Identities=18% Similarity=0.149 Sum_probs=87.8
Q ss_pred cEEEccCC-ccccccCcccccCCCCcEEEcCC-CeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 574 RYLDLSDN-LLSGELPNCSKNWQKLTVLNLAN-NKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 574 ~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
..++++++ +++ .+|. +..+++|++|+|++ |++.+..+..|+.+++|+.|+|++|+|++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 46788888 888 5777 88899999999996 99998888889999999999999999999888889999999999999
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccc
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHG 682 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~ 682 (820)
+|+|++ +|..++..++ |+.|+|++|++..
T Consensus 89 ~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALES-LSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSC-CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccce-eCHHHcccCC-ceEEEeeCCCccC
Confidence 999984 5544443444 9999999998874
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.02 E-value=2.2e-08 Score=109.02 Aligned_cols=111 Identities=9% Similarity=0.038 Sum_probs=62.9
Q ss_pred CcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCC
Q 045139 588 PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSL 667 (820)
Q Consensus 588 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l 667 (820)
..+|.+++.|+.+.+..+... ....+|.+++.|+.+.+. +.++.....+|.+|++|+.+++..+ ++ .|....+.++
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C 333 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGC 333 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTC
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCC
Confidence 345666666666666554332 444556666666666664 3344445556666666666666543 44 3333333356
Q ss_pred CCccEEEcCcccccccCCcccCCCCCCCEEeCcCCC
Q 045139 668 PDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNN 703 (820)
Q Consensus 668 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 703 (820)
.+|+.+.+..+ ++..-..+|.++++|+.+++.++.
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 66666666543 443334566666666666666653
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.99 E-value=2.1e-08 Score=109.22 Aligned_cols=125 Identities=11% Similarity=0.103 Sum_probs=87.5
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
.|+.+.+.++..+ ....+|.+++.|+.+.+. +.++.....+|.++.+|+.+++..+ ++.+-..+|.+|++|+.+.+.
T Consensus 266 ~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 266 YLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp SCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 6777777655433 455678889999999996 4566566778999999999999765 666667889999999999997
Q ss_pred CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCC
Q 045139 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNI 704 (820)
Q Consensus 652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 704 (820)
.+ ++ .|+...+.++++|+.+++.++.... ..+....+|+.+.+..|.+
T Consensus 343 ~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 343 SS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred cc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 65 65 5555444589999999999887542 4567788899888877654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=1.6e-09 Score=115.41 Aligned_cols=182 Identities=15% Similarity=0.198 Sum_probs=98.2
Q ss_pred cccCCCCcEEEcCCCeee---------ecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCc
Q 045139 591 SKNWQKLTVLNLANNKFS---------GKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPA 661 (820)
Q Consensus 591 ~~~l~~L~~L~Ls~N~l~---------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 661 (820)
...+++|+.|.+..+... +.++..+..+++|+.|++++|.-. .++. + .+++|+.|++..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 444566666666543221 112233455567777777666311 1222 2 266777777777766543333
Q ss_pred chh-cCCCCccEEEcCc--cccccc-----CCccc--CCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139 662 WIG-DSLPDLVVLSLRS--NNFHGR-----VPVQV--CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731 (820)
Q Consensus 662 ~l~-~~l~~L~~L~L~~--N~l~~~-----~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 731 (820)
.+. ..+++|+.|+|+. |...+. +...+ ..+++|+.|++++|.+.+..+..+....
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~--------------- 276 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD--------------- 276 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS---------------
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc---------------
Confidence 332 1467777777643 221111 11112 2467888888888877654443333211
Q ss_pred CccccccCceeEEeeccccccccccCceEEEECCCCcCeec----CC-CcccccCCCEEeCCCCccccCCcccccC-CCC
Q 045139 732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGE----IP-EVTSLVGLISLNLSKNSLTGPIPSKIGG-LTL 805 (820)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-l~~ 805 (820)
.++.|++|||+.|.+++. ++ .+..+++|+.|+|++|.++...-..+.. +
T Consensus 277 -----------------------~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-- 331 (362)
T 2ra8_A 277 -----------------------ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-- 331 (362)
T ss_dssp -----------------------SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--
T ss_pred -----------------------cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--
Confidence 123447888888887653 33 4456778888888888776443333332 2
Q ss_pred CCeEeCCCCc
Q 045139 806 LNSLDLSKNM 815 (820)
Q Consensus 806 L~~LdLs~N~ 815 (820)
...+|++.|+
T Consensus 332 g~~~~~~~~~ 341 (362)
T 2ra8_A 332 PMKIDVSDSQ 341 (362)
T ss_dssp CSEEECCSBC
T ss_pred CCEEEecCCc
Confidence 3457777664
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=1.8e-09 Score=115.03 Aligned_cols=169 Identities=14% Similarity=0.143 Sum_probs=112.2
Q ss_pred CCCcccccCCcEEeccCCccc---------ccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccc
Q 045139 612 PDSMDFNCMMLSLHLRNNSFI---------GELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHG 682 (820)
Q Consensus 612 p~~l~~l~~L~~L~Ls~N~l~---------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~ 682 (820)
..+...+++|+.|.+...... +.++..+..+++|+.|+|++|.-. .++. + .+++|+.|+|..|.+..
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCCh
Confidence 344667889999998765331 234456677889999999887311 2333 3 37899999998888765
Q ss_pred cCCcccC--CCCCCCEEeCcC--CCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCc
Q 045139 683 RVPVQVC--HLQRIQVLDLSQ--NNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGL 758 (820)
Q Consensus 683 ~~p~~l~--~l~~L~~L~Ls~--N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 758 (820)
.....+. .+++|+.|+|+. |...+.. .+..+..+ -....++.
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~l~~~--------------------------------l~~~~~p~ 253 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNVFRPL--------------------------------FSKDRFPN 253 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGGGTGGG--------------------------------SCTTTCTT
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccch--hHHHHHHH--------------------------------HhcCCCCC
Confidence 4333443 688999998863 2211110 01111111 00013567
Q ss_pred eEEEECCCCcCeecCC-Cc---ccccCCCEEeCCCCccccC----CcccccCCCCCCeEeCCCCcCcc
Q 045139 759 VKSIDLSSNRLYGEIP-EV---TSLVGLISLNLSKNSLTGP----IPSKIGGLTLLNSLDLSKNMLMR 818 (820)
Q Consensus 759 L~~LdLs~N~l~~~ip-~l---~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~LdLs~N~l~g 818 (820)
|+.|+|++|.+.+..+ .+ ..++.|++|+|+.|.+++. ++..+..+++|+.||+++|.++.
T Consensus 254 Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred cCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 7999999999986544 33 3588999999999999864 44445668999999999999874
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.54 E-value=6.8e-06 Score=88.70 Aligned_cols=127 Identities=9% Similarity=0.074 Sum_probs=76.0
Q ss_pred cCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcC
Q 045139 587 LPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDS 666 (820)
Q Consensus 587 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 666 (820)
....+..+..|+.+.+..+ +......++..+..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +. .++...+.+
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~ 284 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSG 284 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTT
T ss_pred eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccc
Confidence 3445566667777776554 33344556666777777777654 44455566677777777777543 33 344433336
Q ss_pred CCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139 667 LPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM 718 (820)
Q Consensus 667 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 718 (820)
+++|+.+.+.++.++..-..+|.++.+|+.+++..+ ++..-..+|.++++|
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 677777777766666555566677777777777543 442333456665555
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.46 E-value=1.3e-05 Score=86.36 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=51.5
Q ss_pred cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651 (820)
Q Consensus 572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 651 (820)
.++.+.+..+ ++.....+|.+|++|+.+.+.++.++..-..+|.++.+|+.+++..+ ++.+-..+|.+|++|+.+.+.
T Consensus 264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 3444444322 33233446677777777777777766555667777777777777644 554556677777778777776
Q ss_pred CCcCc
Q 045139 652 HNKIS 656 (820)
Q Consensus 652 ~N~l~ 656 (820)
.+ ++
T Consensus 342 ~~-v~ 345 (379)
T 4h09_A 342 KS-IT 345 (379)
T ss_dssp TT-CC
T ss_pred Cc-cC
Confidence 54 44
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=5.5e-08 Score=93.30 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=74.2
Q ss_pred cccccCCCCcEEEcCCC-eeeec----CCCCcccccCCcEEeccCCccccc----CCcchhcCCCCCEEECCCCcCccc-
Q 045139 589 NCSKNWQKLTVLNLANN-KFSGK----IPDSMDFNCMMLSLHLRNNSFIGE----LPSSVKSFTQLTVLDLGHNKISGI- 658 (820)
Q Consensus 589 ~~~~~l~~L~~L~Ls~N-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~- 658 (820)
..+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34555666777777776 65532 233444556677777777776532 334455667788888888887754
Q ss_pred ---cCcchhcCCCCccEEEc--Cccccccc----CCcccCCCCCCCEEeCcCCCCc
Q 045139 659 ---IPAWIGDSLPDLVVLSL--RSNNFHGR----VPVQVCHLQRIQVLDLSQNNIS 705 (820)
Q Consensus 659 ---~p~~l~~~l~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 705 (820)
+...+. ..++|++|+| ++|.+... +...+...++|+.|+|++|.+.
T Consensus 110 ~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 234444 4567888888 77777643 3344555678888888888875
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=3.1e-07 Score=88.06 Aligned_cols=119 Identities=16% Similarity=0.221 Sum_probs=57.3
Q ss_pred HHHhCCCCCCCEEEcCCC-CCCCCCcccc-ccccCCcCCccEEECcCCCCCCchhhh----hhccCCCCcEEEccCCccc
Q 045139 208 LQVVSQLPSLTELQLRGC-NLPSVIASSS-VSFSNSSRSLAHLDLSLNDVSNSVYYW----LFNSSSSLVYLDLSSNKLQ 281 (820)
Q Consensus 208 ~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~~~~~L~~L~Ls~n~l~~~~~~~----~~~~~~~L~~L~Ls~n~l~ 281 (820)
...+...+.|++|+|++| .+.......+ ..+... ++|++|+|++|.+++..... +.... +|++|+|++|.++
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~ 106 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFIS 106 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCC
Confidence 344455555555555555 4443211100 112222 55555555555555422222 22222 5666666666655
Q ss_pred CC----CCCCCCCCCCCCCEEEC--CCCCCC-----CcchhhhccCCCcEEEcCCCCCC
Q 045139 282 GP----IPDSAFPNPTSLSYLDL--SNNQLV-----SVPKSFRNLCRLRALYQDSNNLT 329 (820)
Q Consensus 282 g~----ip~~~l~~l~~L~~L~L--s~n~l~-----~ip~~l~~l~~L~~L~L~~n~l~ 329 (820)
+. +... +...+.|++|+| ++|.+. .+...+...+.|++|++++|.+.
T Consensus 107 ~~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEA-LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHH-HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 21 1222 444555666666 556665 13344555566666666666654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=1.2e-07 Score=95.55 Aligned_cols=64 Identities=25% Similarity=0.318 Sum_probs=29.9
Q ss_pred ccCCcEEeccCCcccc--cCCcchhcCCCCCEEECCCCcCccccCcchhcCCC--CccEEEcCcccccccC
Q 045139 618 NCMMLSLHLRNNSFIG--ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLP--DLVVLSLRSNNFHGRV 684 (820)
Q Consensus 618 l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~--~L~~L~L~~N~l~~~~ 684 (820)
+++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+. .+. +|++|+|++|++.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~-~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELD-KIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGG-GGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhh-hcccCCcceEEccCCcCcccc
Confidence 4455555555555544 2334444555555555555555532 1111 122 4555555555554433
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=2.8e-07 Score=92.76 Aligned_cols=97 Identities=23% Similarity=0.295 Sum_probs=71.9
Q ss_pred EEccCCc---cccccCcccccCCCCcEEEcCCCeeee--cCCCCcccccCCcEEeccCCcccccCCcchhcCC--CCCEE
Q 045139 576 LDLSDNL---LSGELPNCSKNWQKLTVLNLANNKFSG--KIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFT--QLTVL 648 (820)
Q Consensus 576 L~Ls~n~---l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L 648 (820)
++++.|. +.+.++....++++|+.|+|++|+|++ .+|..++.+++|+.|+|++|+|.+. ..+..++ +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 5667773 333333334678899999999999987 5567788899999999999999875 3455555 89999
Q ss_pred ECCCCcCccccCcc------hhcCCCCccEEE
Q 045139 649 DLGHNKISGIIPAW------IGDSLPDLVVLS 674 (820)
Q Consensus 649 ~Ls~N~l~~~~p~~------l~~~l~~L~~L~ 674 (820)
+|++|++.+.+|.. +...+++|+.||
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 99999999877631 222577777775
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=3.9e-06 Score=78.14 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=33.9
Q ss_pred CCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCC----CCCCeeeCCCcc-CCCCccHHHHhCCCC
Q 045139 141 NIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQL----SFLEYVRLNQVN-LGEATDWLQVVSQLP 215 (820)
Q Consensus 141 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~~~l~~l~ 215 (820)
+|++||+++|.++..--..+..+++|++|+|++|..+....+..++.+ ++|++|++++|. +++ .-...+.+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHhcCC
Confidence 344444444444433333344444444444444433333333333332 234444444432 322 1122334445
Q ss_pred CCCEEEcCCC
Q 045139 216 SLTELQLRGC 225 (820)
Q Consensus 216 ~L~~L~Ls~n 225 (820)
+|++|++++|
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 5555555444
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=3.4e-06 Score=78.52 Aligned_cols=88 Identities=13% Similarity=0.164 Sum_probs=68.8
Q ss_pred CCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCC-CCCCCCccCCCC----CCCcEEeCCCCccccccchhhccCCC
Q 045139 115 QHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAG-FTGRVPYQLGNL----TSLQYLDLSFNFDMLSKKLEWLSQLS 189 (820)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~n~~~~~~~~~~l~~l~ 189 (820)
..|++||++++.++...+ ..+..+++|++|+|++|. ++..--..++.+ ++|++|+|++|..+....+..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 468999999998877533 456889999999999985 665444456654 47999999998767778888888999
Q ss_pred CCCeeeCCCcc-CCC
Q 045139 190 FLEYVRLNQVN-LGE 203 (820)
Q Consensus 190 ~L~~L~l~~n~-l~~ 203 (820)
+|++|+++++. +++
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 99999999886 444
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.93 E-value=0.0012 Score=58.43 Aligned_cols=57 Identities=25% Similarity=0.294 Sum_probs=48.4
Q ss_pred EEEECCCCcCe-ecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCcc
Q 045139 760 KSIDLSSNRLY-GEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMR 818 (820)
Q Consensus 760 ~~LdLs~N~l~-~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g 818 (820)
..+|.+++.++ ..+| .+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47899999996 4677 543 479999999999997777788999999999999999864
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.90 E-value=0.00088 Score=63.52 Aligned_cols=59 Identities=19% Similarity=0.088 Sum_probs=30.0
Q ss_pred CCcEEEccCCcccCC----CCCCCCCCCCCCCEEECCCCC---CC-----CcchhhhccCCCcEEEcCCCCC
Q 045139 269 SLVYLDLSSNKLQGP----IPDSAFPNPTSLSYLDLSNNQ---LV-----SVPKSFRNLCRLRALYQDSNNL 328 (820)
Q Consensus 269 ~L~~L~Ls~n~l~g~----ip~~~l~~l~~L~~L~Ls~n~---l~-----~ip~~l~~l~~L~~L~L~~n~l 328 (820)
.|++|+|++|.|.+. +-.. +..-+.|++|+|++|. +. .+.+.+..-+.|+.|+++.|.+
T Consensus 99 tL~~L~L~~N~Ig~~Ga~ala~a-L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 99 SLRVLNVESNFLTPELLARLLRS-TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp SCCEEECCSSBCCHHHHHHHHHH-TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred ccCeEecCCCcCCHHHHHHHHHH-HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 555555555555421 1111 3334456666665442 23 2334455666777777766544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.86 E-value=0.00063 Score=64.52 Aligned_cols=17 Identities=6% Similarity=0.302 Sum_probs=9.2
Q ss_pred cCCCCCCEEeccCC-CCC
Q 045139 137 GSLKNIRHLDLSNA-GFT 153 (820)
Q Consensus 137 ~~l~~L~~L~Ls~n-~l~ 153 (820)
.+-+.|++|+|++| .|.
T Consensus 38 ~~n~~L~~L~L~~nn~ig 55 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVS 55 (197)
T ss_dssp TTCSSCCEEECTTCCSSC
T ss_pred hcCCCccEEECCCCCCCC
Confidence 33455666666654 443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.16 E-value=0.0068 Score=53.52 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=28.2
Q ss_pred EEECCCCcCc-cccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCc
Q 045139 647 VLDLGHNKIS-GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS 705 (820)
Q Consensus 647 ~L~Ls~N~l~-~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 705 (820)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC---TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC---cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4455555543 23443321 24555555555555444444555555566666666553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.11 E-value=39 Score=27.45 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCcch-hhhccCCCcEEEcCC
Q 045139 283 PIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDS 325 (820)
Q Consensus 283 ~ip~~~l~~l~~L~~L~Ls~n~l~~ip~-~l~~l~~L~~L~L~~ 325 (820)
.|...+|.+|++|+.+.+-.+ ++.|.. .|.+|.+|+.+.+..
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 566666777777777777653 444433 366677776666644
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.83 E-value=63 Score=26.16 Aligned_cols=12 Identities=33% Similarity=0.238 Sum_probs=4.6
Q ss_pred hhcCCCCCEEEC
Q 045139 639 VKSFTQLTVLDL 650 (820)
Q Consensus 639 l~~l~~L~~L~L 650 (820)
|.+|.+|+.+.+
T Consensus 39 F~~C~~L~~i~~ 50 (100)
T 2lz0_A 39 FSGCTALEKLIL 50 (100)
T ss_dssp STTCTTCCCEEE
T ss_pred HhccCCccEEEE
Confidence 333333333333
Done!