Your job contains 1 sequence.
>045140
MENAETNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRR
KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK
GVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP
VFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASL
NSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQN
ENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFH
NFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVR
NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 045140
(468 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2199726 - symbol:AT1G76120 species:3702 "Arabi... 697 1.0e-124 2
TAIR|locus:2012898 - symbol:AT1G20370 species:3702 "Arabi... 743 1.4e-73 1
UNIPROTKB|E1BDL3 - symbol:PUS1 "tRNA pseudouridine syntha... 338 4.8e-58 2
RGD|1311871 - symbol:Pus1 "pseudouridylate synthase 1" sp... 328 1.6e-57 2
UNIPROTKB|Q4KM92 - symbol:Pus1 "tRNA pseudouridine syntha... 328 1.6e-57 2
UNIPROTKB|G8JLB3 - symbol:PUS1 "tRNA pseudouridine syntha... 330 2.6e-57 2
UNIPROTKB|Q9Y606 - symbol:PUS1 "tRNA pseudouridine syntha... 330 2.6e-57 2
MGI|MGI:1929237 - symbol:Pus1 "pseudouridine synthase 1" ... 325 3.3e-57 2
UNIPROTKB|F1RFR2 - symbol:PUS1 "tRNA pseudouridine syntha... 324 6.9e-57 2
UNIPROTKB|F1NZ90 - symbol:PUS1 "tRNA pseudouridine syntha... 315 8.8e-57 2
UNIPROTKB|J9NVH5 - symbol:PUS1 "tRNA pseudouridine syntha... 313 6.9e-55 2
UNIPROTKB|E2QW32 - symbol:PUS1 "tRNA pseudouridine syntha... 313 9.1e-53 2
UNIPROTKB|F5H1S9 - symbol:PUS1 "tRNA pseudouridine syntha... 277 1.1e-50 2
POMBASE|SPCC126.03 - symbol:pus1 "tRNA pseudouridine synt... 499 9.8e-48 1
DICTYBASE|DDB_G0290987 - symbol:pus1 "tRNA pseudouridylat... 305 2.2e-45 2
FB|FBgn0038811 - symbol:CG4159 species:7227 "Drosophila m... 263 7.1e-43 2
ZFIN|ZDB-GENE-041212-26 - symbol:pus1 "pseudouridine synt... 266 1.3e-42 2
ASPGD|ASPL0000001573 - symbol:AN6165 species:162425 "Emer... 267 1.2e-40 2
SGD|S000006133 - symbol:PUS1 "tRNA:pseudouridine synthase... 275 1.4e-39 2
SGD|S000003031 - symbol:PUS2 "Mitochondrial tRNA:pseudour... 249 3.7e-39 2
UNIPROTKB|G4N3B4 - symbol:MGG_07663 "tRNA pseudouridine s... 213 3.4e-35 3
WB|WBGene00004248 - symbol:pus-1 species:6239 "Caenorhabd... 235 2.3e-33 2
POMBASE|SPBC887.11 - symbol:pus2 "tRNA pseudouridine synt... 222 5.3e-30 3
TAIR|locus:2065748 - symbol:AT2G30320 species:3702 "Arabi... 232 5.4e-30 3
POMBASE|SPCC16C4.06c - symbol:SPCC16C4.06c "tRNA pseudour... 186 1.1e-25 2
UNIPROTKB|F5GXL3 - symbol:PUS1 "tRNA pseudouridine syntha... 233 6.3e-19 1
UNIPROTKB|F5GY32 - symbol:PUS1 "tRNA pseudouridine syntha... 230 1.3e-18 1
DICTYBASE|DDB_G0286567 - symbol:DDB_G0286567 species:4468... 158 2.4e-16 3
POMBASE|SPAC25B8.05 - symbol:SPAC25B8.05 "tRNA-pseudourid... 180 3.1e-16 2
RGD|1310757 - symbol:Pus3 "pseudouridylate synthase 3" sp... 127 7.1e-16 3
MGI|MGI:1914299 - symbol:Pus3 "pseudouridine synthase 3" ... 132 1.6e-15 3
UNIPROTKB|F1N5P3 - symbol:PUS3 "tRNA pseudouridine syntha... 139 1.7e-15 3
UNIPROTKB|Q3SX07 - symbol:PUS3 "tRNA pseudouridine(38/39)... 139 1.7e-15 3
UNIPROTKB|E2RGS6 - symbol:PUS3 "tRNA pseudouridine syntha... 136 4.7e-15 3
UNIPROTKB|F1S759 - symbol:LOC100739830 "tRNA pseudouridin... 136 5.9e-15 3
UNIPROTKB|Q9BZE2 - symbol:PUS3 "tRNA pseudouridine(38/39)... 137 7.4e-15 3
UNIPROTKB|F1RVF1 - symbol:LOC100739830 "tRNA pseudouridin... 136 3.0e-14 3
UNIPROTKB|F1P3X5 - symbol:PUS3 "tRNA pseudouridine syntha... 126 1.7e-13 3
DICTYBASE|DDB_G0281619 - symbol:DDB_G0281619 "tRNA pseudo... 183 4.7e-11 1
ZFIN|ZDB-GENE-030131-9433 - symbol:pus3 "pseudouridylate ... 104 6.7e-10 3
DICTYBASE|DDB_G0288909 - symbol:pus3 "tRNA pseudouridylat... 103 1.1e-09 3
UNIPROTKB|F5H168 - symbol:PUS1 "tRNA pseudouridine syntha... 148 1.2e-09 1
UNIPROTKB|F5H1B2 - symbol:PUS1 "tRNA pseudouridine syntha... 148 1.2e-09 1
UNIPROTKB|F8W9U5 - symbol:PUS1 "tRNA pseudouridine syntha... 148 1.2e-09 1
TIGR_CMR|CBU_0892 - symbol:CBU_0892 "tRNA pseudouridine s... 111 8.5e-09 2
WB|WBGene00006473 - symbol:tag-124 species:6239 "Caenorha... 98 1.4e-08 3
UNIPROTKB|E9PRI9 - symbol:PUS3 "tRNA pseudouridine syntha... 137 1.8e-08 1
TIGR_CMR|CHY_2276 - symbol:CHY_2276 "tRNA pseudouridine s... 114 2.0e-07 2
TAIR|locus:2009021 - symbol:AT1G34150 species:3702 "Arabi... 89 2.2e-07 3
UNIPROTKB|Q8N0Z8 - symbol:PUSL1 "tRNA pseudouridine synth... 98 4.8e-07 2
TIGR_CMR|NSE_0020 - symbol:NSE_0020 "tRNA pseudouridine s... 95 5.8e-07 2
CGD|CAL0000624 - symbol:orf19.6297 species:5476 "Candida ... 97 6.2e-07 2
SGD|S000001895 - symbol:DEG1 "tRNA:pseudouridine synthase... 112 9.4e-07 2
UNIPROTKB|G4MKS9 - symbol:MGG_16154 "tRNA-pseudouridine s... 106 9.8e-07 3
UNIPROTKB|F1RJE9 - symbol:PUSL1 "tRNA pseudouridine synth... 92 2.8e-06 2
UNIPROTKB|P07649 - symbol:truA "tRNA pseudouridine syntha... 97 3.4e-06 2
ASPGD|ASPL0000040109 - symbol:AN3170 species:162425 "Emer... 72 9.5e-06 5
UNIPROTKB|Q9KTA4 - symbol:truA "tRNA pseudouridine syntha... 95 1.1e-05 2
TIGR_CMR|VC_0999 - symbol:VC_0999 "tRNA pseudouridine syn... 95 1.1e-05 2
TIGR_CMR|SPO_3143 - symbol:SPO_3143 "tRNA pseudouridine s... 98 2.5e-05 2
MGI|MGI:3047787 - symbol:Pusl1 "pseudouridylate synthase-... 84 8.1e-05 2
TAIR|locus:2077552 - symbol:AT3G06950 species:3702 "Arabi... 87 8.3e-05 2
TIGR_CMR|GSU_2877 - symbol:GSU_2877 "tRNA pseudouridine s... 87 0.00011 2
TIGR_CMR|DET_0504 - symbol:DET_0504 "tRNA pseudouridine s... 90 0.00017 2
UNIPROTKB|E1BUI0 - symbol:PUSL1 "tRNA pseudouridine synth... 82 0.00034 2
UNIPROTKB|A6QP68 - symbol:PUSL1 "tRNA pseudouridine synth... 80 0.00056 2
>TAIR|locus:2199726 [details] [associations]
symbol:AT1G76120 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 EMBL:CP002684 GO:GO:0003723
GO:GO:0008033 EMBL:AC009978 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000030790
EMBL:AY086381 EMBL:AY123978 EMBL:BT000606 IPI:IPI00531649
RefSeq:NP_565126.1 UniGene:At.34703 ProteinModelPortal:Q9SGS1
EnsemblPlants:AT1G76120.1 GeneID:843944 KEGG:ath:AT1G76120
TAIR:At1g76120 InParanoid:Q9SGS1 OMA:HIGATER PhylomeDB:Q9SGS1
ProtClustDB:CLSN2689226 Genevestigator:Q9SGS1 Uniprot:Q9SGS1
Length = 463
Score = 697 (250.4 bits), Expect = 1.0e-124, Sum P(2) = 1.0e-124
Identities = 158/273 (57%), Positives = 194/273 (71%)
Query: 32 TSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEE 91
T+T+D+E DL + G T+ Q K+AI FA+CGVGYQGMQKNPGAKTIEG+LEE
Sbjct: 3 TTTTDEEIDL--SCDGG--VTEPQ-----KVAIIFAFCGVGYQGMQKNPGAKTIEGELEE 53
Query: 92 ALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQ 151
ALFH+GAV E RG P+ YD+ARSARTDKGVSAVGQVVSGRF +DP G V RLNSNLP Q
Sbjct: 54 ALFHAGAVPESIRGKPKLYDFARSARTDKGVSAVGQVVSGRFIVDPLGFVNRLNSNLPNQ 113
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLEC 211
IRIFGYK VT SF++KKFCD+RRYVYLLPVFALD SHRDRE+VMASLG G E VKC EC
Sbjct: 114 IRIFGYKHVTPSFSSKKFCDRRRYVYLLPVFALDPISHRDRETVMASLGPGEEYVKCFEC 173
Query: 212 SERGRKVI-GVMGK----------RTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNT 260
SERGRK+ G++GK +Q + SN+ +A L S +K++ + S G
Sbjct: 174 SERGRKIPPGLVGKWKGTNFGTKSLDFQSDISSNNSSA-LRSDIKIEALSSNLAG---LC 229
Query: 261 NLESVESNKTISESVMVENANSESVNETLVESR 293
+++ VE + +S + N NS +ET V+S+
Sbjct: 230 SVD-VEVGRIQEDSCKL-NTNS---SETKVKSK 257
Score = 549 (198.3 bits), Expect = 1.0e-124, Sum P(2) = 1.0e-124
Identities = 101/146 (69%), Positives = 126/146 (86%)
Query: 323 SVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGA 382
+ N E +K S FCYGE+EK+RF+RIL YVGS+NFHNFTTRTKA+DP+A R IISF A
Sbjct: 246 NTNSSETKVK-SKFCYGEKEKERFSRILSCYVGSYNFHNFTTRTKADDPTANRQIISFTA 304
Query: 383 DSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPT 442
++V+N++GIDF+KCEV+G+SFMLHQIRKM+GLAVA++RNCA +SLI++A KDVNI VP
Sbjct: 305 NTVINLDGIDFIKCEVLGKSFMLHQIRKMMGLAVAIMRNCASESLIQSAFSKDVNITVPM 364
Query: 443 APEVGLYLDECIFASYNKKWKDSHEE 468
APEVGLYLDEC F SYN+ ++DSHEE
Sbjct: 365 APEVGLYLDECFFTSYNRNFEDSHEE 390
>TAIR|locus:2012898 [details] [associations]
symbol:AT1G20370 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006333 "chromatin assembly or
disassembly" evidence=RCA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:AC026234 eggNOG:COG0101 KO:K06173 OMA:IRKMISM
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 EMBL:AY035176 EMBL:AY059123 IPI:IPI00538439
PIR:E86337 RefSeq:NP_564112.1 UniGene:At.21336
ProteinModelPortal:Q9LN29 STRING:Q9LN29 PaxDb:Q9LN29 PRIDE:Q9LN29
EnsemblPlants:AT1G20370.1 GeneID:838625 KEGG:ath:AT1G20370
TAIR:At1g20370 HOGENOM:HOG000030790 InParanoid:Q9LN29
PhylomeDB:Q9LN29 ProtClustDB:CLSN2917029 ArrayExpress:Q9LN29
Genevestigator:Q9LN29 Uniprot:Q9LN29
Length = 549
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 164/308 (53%), Positives = 206/308 (66%)
Query: 1 MENAETNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCK-- 58
MEN E + EKLP + P +EPD K+LK+S T E D G + +R+ K
Sbjct: 1 MENQEPDIEKLPRDDV-PDREPDHKKLKISTTG---QETDSSAVTTGGSNVAERRAPKYR 56
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
RRK+AI FA+CGVGYQGMQKNPGAKTIEG+LEEALFH+GAV + DR PR Y+WARSART
Sbjct: 57 RRKVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARSART 116
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGVSAVGQVVSGRF +DPPG VERLNS LP QIR+FGYKRV SF++KKFCD+RRYVYL
Sbjct: 117 DKGVSAVGQVVSGRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKFCDRRRYVYL 176
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKV-IGVMGKRTYQLGLPSNDEN 237
+PVFALD H + E V LG E VKC+ECSE+G K+ +GVMGK T +
Sbjct: 177 IPVFALDPCVHGEAEMVRTDLGY--EYVKCVECSEKGYKIPLGVMGKDT------DCCDT 228
Query: 238 ASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTS-- 295
SL +++ D STC+ + E++ S+ +E+ N NSE ++ V + +S
Sbjct: 229 KSL--EIQSDISSSTCDAIGADVKCETLSSSVPSAEN----NLNSEVLDGADVSALSSKA 282
Query: 296 ETVQNENT 303
E ++ NT
Sbjct: 283 EGMEESNT 290
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 125/244 (51%), Positives = 165/244 (67%)
Query: 229 LGLPSNDENA--SLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVN 286
LG+ D + + + +++ D STC+ + E++ S+ +E+ N NSE ++
Sbjct: 216 LGVMGKDTDCCDTKSLEIQSDISSSTCDAIGADVKCETLSSSVPSAEN----NLNSEVLD 271
Query: 287 ETLVESRTS--ETVQNENTXXXXXXXXXXXXXVMAEERSVNGEEKLLKGSGFCYGEEEKK 344
V + +S E ++ NT E + GE+ S FCYGE+EK+
Sbjct: 272 GADVSALSSKAEGMEESNTLAK------------VEMNNGEGEDMTKSESKFCYGEKEKE 319
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
RFNRIL +YVGSHNFHNFTTRTKA DP+A RYI+SF A++V+N++G DF+KCEVVGQSFM
Sbjct: 320 RFNRILSYYVGSHNFHNFTTRTKAADPAANRYILSFNANTVINLDGKDFVKCEVVGQSFM 379
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKD 464
LHQIRKMIGLAVA++RN AP+SLIE + +KDV INVP APEVGLYLDEC F SYNK++K
Sbjct: 380 LHQIRKMIGLAVAIMRNYAPESLIEASFKKDVRINVPMAPEVGLYLDECFFTSYNKRFKG 439
Query: 465 SHEE 468
SHEE
Sbjct: 440 SHEE 443
>UNIPROTKB|E1BDL3 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 CTD:80324 OMA:CDARTYF
EMBL:DAAA02044957 IPI:IPI00698653 RefSeq:XP_002694500.1
RefSeq:XP_593895.2 UniGene:Bt.7818 Ensembl:ENSBTAT00000017270
GeneID:515808 KEGG:bta:515808 NextBio:20872010 Uniprot:E1BDL3
Length = 433
Score = 338 (124.0 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 86/208 (41%), Positives = 114/208 (54%)
Query: 12 PSPSLSPRQEPDPKRLKMSATST---SDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAY 68
P P + +QE D K T + E+ + D +R+L KR KI + AY
Sbjct: 41 PIP-VGAKQEQDKKARSGWQGPTRIWEETEQQAKKLKSSEDGEQQRKLPKR-KIVLLMAY 98
Query: 69 CGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
G GY GMQ+N G+ KTIE DL AL SG + E + R+ + R ARTDKGVSA
Sbjct: 99 SGKGYHGMQRNVGSSKFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAA 158
Query: 126 GQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K CD R YVY+LP FA
Sbjct: 159 GQVVSLKVWLIDD--ILEKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYVYMLPTFAF 216
Query: 185 DSSSHRDRESVMA----SLGSGNELVKC 208
H ++ +LG N L+ C
Sbjct: 217 AHKDHDSQDETYRLSAETLGRVNRLLAC 244
Score = 276 (102.2 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 54/118 (45%), Positives = 78/118 (66%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
R NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V GQSFM
Sbjct: 237 RVNRLLACYKGTHNFHNFTSQKGPHEPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFM 296
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
HQIRKM+GL VA+V+ AP+S++E + ++VP AP +GL L+ F YN+++
Sbjct: 297 THQIRKMVGLVVAIVKGYAPESVLERCWG-EAKVDVPKAPGLGLVLERVHFEKYNQRF 353
>RGD|1311871 [details] [associations]
symbol:Pus1 "pseudouridylate synthase 1" species:10116 "Rattus
norvegicus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0008152 "metabolic process" evidence=ISO]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISO]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA;ISO] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 RGD:1311871 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
CTD:80324 HOGENOM:HOG000031229 HOVERGEN:HBG000489 EMBL:AC095390
IPI:IPI00190104 RefSeq:NP_001020734.1 UniGene:Rn.11475
ProteinModelPortal:Q4KM92 STRING:Q4KM92 Ensembl:ENSRNOT00000056780
GeneID:304567 KEGG:rno:304567 UCSC:RGD:1311871 NextBio:653267
ArrayExpress:Q4KM92 Genevestigator:Q4KM92
GermOnline:ENSRNOG00000037500 Uniprot:Q4KM92
Length = 423
Score = 328 (120.5 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 81/188 (43%), Positives = 109/188 (57%)
Query: 10 KLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYC 69
K+P P+L P +PD K + E G D R+L KR KI + AY
Sbjct: 35 KVP-PAL-PSHQPDRKG--RGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYS 89
Query: 70 GVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
G GY GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDKGVSA G
Sbjct: 90 GKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAG 149
Query: 127 QVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
QVVS + + ID +++++NS+LP+ IRI G KRVT FN+K CD R Y Y+LP FA
Sbjct: 150 QVVSLKVWLIDD--ILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF- 206
Query: 186 SSSHRDRE 193
+H+DR+
Sbjct: 207 --AHKDRD 212
Score = 281 (104.0 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 57/129 (44%), Positives = 86/129 (66%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 223 ETLQQVNRLLGCYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 282
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 283 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 341
Query: 461 KW-KDS-HE 467
++ D HE
Sbjct: 342 RFGSDGLHE 350
>UNIPROTKB|Q4KM92 [details] [associations]
symbol:Pus1 "tRNA pseudouridine synthase A, mitochondrial"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 RGD:1311871 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
CTD:80324 HOGENOM:HOG000031229 HOVERGEN:HBG000489 EMBL:AC095390
IPI:IPI00190104 RefSeq:NP_001020734.1 UniGene:Rn.11475
ProteinModelPortal:Q4KM92 STRING:Q4KM92 Ensembl:ENSRNOT00000056780
GeneID:304567 KEGG:rno:304567 UCSC:RGD:1311871 NextBio:653267
ArrayExpress:Q4KM92 Genevestigator:Q4KM92
GermOnline:ENSRNOG00000037500 Uniprot:Q4KM92
Length = 423
Score = 328 (120.5 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 81/188 (43%), Positives = 109/188 (57%)
Query: 10 KLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYC 69
K+P P+L P +PD K + E G D R+L KR KI + AY
Sbjct: 35 KVP-PAL-PSHQPDRKG--RGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYS 89
Query: 70 GVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
G GY GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDKGVSA G
Sbjct: 90 GKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAG 149
Query: 127 QVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
QVVS + + ID +++++NS+LP+ IRI G KRVT FN+K CD R Y Y+LP FA
Sbjct: 150 QVVSLKVWLIDD--ILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF- 206
Query: 186 SSSHRDRE 193
+H+DR+
Sbjct: 207 --AHKDRD 212
Score = 281 (104.0 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 57/129 (44%), Positives = 86/129 (66%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 223 ETLQQVNRLLGCYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 282
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 283 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 341
Query: 461 KW-KDS-HE 467
++ D HE
Sbjct: 342 RFGSDGLHE 350
>UNIPROTKB|G8JLB3 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730
GO:GO:0003677 GO:GO:0045944 GO:GO:0003723 GO:GO:0005667
GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
EMBL:AC131009 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HGNC:HGNC:15508 ChiTaRS:PUS1
ProteinModelPortal:G8JLB3 SMR:G8JLB3 PRIDE:G8JLB3
Ensembl:ENST00000322060 Bgee:G8JLB3 Uniprot:G8JLB3
Length = 384
Score = 330 (121.2 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 76/162 (46%), Positives = 99/162 (61%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEA 92
D E +G D +R+ +RKI + AY G GY GMQ+N G+ KTIE DL A
Sbjct: 33 DGEHPAKKLKSGGDEE-RREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSA 91
Query: 93 LFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQ 151
L SG + E + R+ + R ARTDKGVSA GQVVS + + ID ++E++NS+LP+
Sbjct: 92 LVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILEKINSHLPSH 149
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 193
IRI G KRVT FN+K CD R Y YLLP FA +H+DR+
Sbjct: 150 IRILGLKRVTGGFNSKNRCDARTYCYLLPTFAF---AHKDRD 188
Score = 277 (102.6 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 56/129 (43%), Positives = 84/129 (65%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +DPSA RYI+ + EG++F V G
Sbjct: 199 ETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKG 258
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 259 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 317
Query: 461 KWKDS--HE 467
++ + HE
Sbjct: 318 RFGNDGLHE 326
Score = 39 (18.8 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 2 ENAETNTEKLPSPSLSPRQEPDPKR 26
E+ E +KL S R+E PKR
Sbjct: 32 EDGEHPAKKLKSGGDEERREKPPKR 56
>UNIPROTKB|Q9Y606 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0004730
"pseudouridylate synthase activity" evidence=NAS] [GO:0008033 "tRNA
processing" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005739
GO:GO:0005634 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0008033 GO:GO:0030374
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0004730 GO:GO:0031119
BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
Orphanet:2598 EMBL:AF318369 EMBL:AK074659 EMBL:AK292242
EMBL:BC002901 EMBL:BC009505 EMBL:BC019320 EMBL:AF116238
IPI:IPI00001716 IPI:IPI00619930 RefSeq:NP_001002019.1
RefSeq:NP_001002020.1 RefSeq:NP_079491.2 UniGene:Hs.592004
ProteinModelPortal:Q9Y606 SMR:Q9Y606 STRING:Q9Y606
PhosphoSite:Q9Y606 DMDM:114152895 PaxDb:Q9Y606 PRIDE:Q9Y606
DNASU:80324 Ensembl:ENST00000376649 Ensembl:ENST00000440818
Ensembl:ENST00000443358 GeneID:80324 KEGG:hsa:80324 UCSC:uc001ujf.3
CTD:80324 GeneCards:GC12P132413 HGNC:HGNC:15508 HPA:HPA051636
MIM:600462 MIM:608109 neXtProt:NX_Q9Y606 PharmGKB:PA34047
HOGENOM:HOG000031229 HOVERGEN:HBG000489 InParanoid:Q9Y606
OMA:CDARTYF OrthoDB:EOG4QRH44 ChiTaRS:PUS1 GenomeRNAi:80324
NextBio:70847 ArrayExpress:Q9Y606 Bgee:Q9Y606 CleanEx:HS_PUS1
Genevestigator:Q9Y606 GermOnline:ENSG00000177192 Uniprot:Q9Y606
Length = 427
Score = 330 (121.2 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 76/162 (46%), Positives = 99/162 (61%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEA 92
D E +G D +R+ +RKI + AY G GY GMQ+N G+ KTIE DL A
Sbjct: 61 DGEHPAKKLKSGGDEE-RREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSA 119
Query: 93 LFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQ 151
L SG + E + R+ + R ARTDKGVSA GQVVS + + ID ++E++NS+LP+
Sbjct: 120 LVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILEKINSHLPSH 177
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 193
IRI G KRVT FN+K CD R Y YLLP FA +H+DR+
Sbjct: 178 IRILGLKRVTGGFNSKNRCDARTYCYLLPTFAF---AHKDRD 216
Score = 277 (102.6 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 56/129 (43%), Positives = 84/129 (65%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +DPSA RYI+ + EG++F V G
Sbjct: 227 ETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKG 286
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 287 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 345
Query: 461 KWKDS--HE 467
++ + HE
Sbjct: 346 RFGNDGLHE 354
Score = 39 (18.8 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 2 ENAETNTEKLPSPSLSPRQEPDPKR 26
E+ E +KL S R+E PKR
Sbjct: 60 EDGEHPAKKLKSGGDEERREKPPKR 84
>MGI|MGI:1929237 [details] [associations]
symbol:Pus1 "pseudouridine synthase 1" species:10090 "Mus
musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005667 "transcription
factor complex" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IMP] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IDA;IMP]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IDA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 MGI:MGI:1929237 GO:GO:0005739
GO:GO:0005730 GO:GO:0003677 GO:GO:0045944 GO:GO:0003723
GO:GO:0005667 GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 CTD:80324
HOVERGEN:HBG000489 OrthoDB:EOG4QRH44 EMBL:AF116237 EMBL:AF269250
EMBL:AB041563 EMBL:AK089258 EMBL:AK138570 EMBL:BC021446
EMBL:BC034359 IPI:IPI00123912 IPI:IPI00621502 IPI:IPI00623093
IPI:IPI00653171 RefSeq:NP_001020733.1 RefSeq:NP_062674.2
UniGene:Mm.23528 ProteinModelPortal:Q9WU56 SMR:Q9WU56 STRING:Q9WU56
PhosphoSite:Q9WU56 PRIDE:Q9WU56 DNASU:56361
Ensembl:ENSMUST00000031481 Ensembl:ENSMUST00000031483
Ensembl:ENSMUST00000112426 Ensembl:ENSMUST00000170468 GeneID:56361
KEGG:mmu:56361 UCSC:uc008yrm.1 UCSC:uc008yrn.1 UCSC:uc008yro.1
UCSC:uc008yrp.1 NextBio:312382 Bgee:Q9WU56 CleanEx:MM_PUS1
Genevestigator:Q9WU56 GermOnline:ENSMUSG00000029507 Uniprot:Q9WU56
Length = 423
Score = 325 (119.5 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 80/188 (42%), Positives = 108/188 (57%)
Query: 10 KLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYC 69
K+P P+L+ Q P R + E G D R+L KR KI + AY
Sbjct: 35 KVP-PALASHQ---PDRKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYS 89
Query: 70 GVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
G GY GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDKGVSA G
Sbjct: 90 GKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAG 149
Query: 127 QVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
QVVS + + ID +++++NS+LP+ IRI G KRVT FN+K CD R Y Y+LP FA
Sbjct: 150 QVVSLKVWLIDD--ILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF- 206
Query: 186 SSSHRDRE 193
+H+DR+
Sbjct: 207 --AHKDRD 212
Score = 281 (104.0 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 54/122 (44%), Positives = 83/122 (68%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 223 ETLQQVNRLLACYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 282
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 283 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 341
Query: 461 KW 462
++
Sbjct: 342 RF 343
>UNIPROTKB|F1RFR2 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
OMA:CDARTYF EMBL:CU469318 Ensembl:ENSSSCT00000010680 Uniprot:F1RFR2
Length = 433
Score = 324 (119.1 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 81/189 (42%), Positives = 109/189 (57%)
Query: 12 PSPSLSPRQEPDPKRL---KMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAY 68
P P + QE D K + +A + E+ + D +R+L KR KI + AY
Sbjct: 41 PVP-VGTGQEQDKKARSGWQGAARIWEETEQQAKKLKSSEDGEQRRKLPKR-KIVLLMAY 98
Query: 69 CGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
G GY GMQ+N G+ KTIE DL AL SG + E + R+ + R ARTDKGVSA
Sbjct: 99 SGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAA 158
Query: 126 GQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K CD R Y Y+LP FA
Sbjct: 159 GQVVSLKVWLIDD--ILEKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYFYMLPTFAF 216
Query: 185 DSSSHRDRE 193
+H+D +
Sbjct: 217 ---AHKDHD 222
Score = 279 (103.3 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 54/122 (44%), Positives = 81/122 (66%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E +R NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 233 ETLQRVNRLLACYKGTHNFHNFTSQKGPREPSARRYILDMFCEEPFVREGMEFAVIKVKG 292
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM HQIRKM+GL VA+++ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 293 QSFMTHQIRKMVGLVVAIIKGYAPESVLERSWG-EAKVDVPKAPGLGLVLERVHFEKYNQ 351
Query: 461 KW 462
++
Sbjct: 352 RF 353
>UNIPROTKB|F1NZ90 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730
GO:GO:0003677 GO:GO:0045944 GO:GO:0003723 GO:GO:0005667
GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 OMA:CDARTYF
EMBL:AADN02034827 IPI:IPI00587879 Ensembl:ENSGALT00000003714
Uniprot:F1NZ90
Length = 405
Score = 315 (115.9 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 76/191 (39%), Positives = 106/191 (55%)
Query: 12 PSPSLSPRQEPDPKRLKMSATSTSDDERDL----IPAAAG-ADSTTKRQLCKRRKIAIFF 66
P+PS Q P + S +E + AG D+ + + +RKI +
Sbjct: 7 PAPSAPSVQVPLAMAKRPSGAGEGPEENGQQAKRLKGTAGEGDAEGQNKRTPKRKIVLLM 66
Query: 67 AYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
AY G GY GMQ+N G+ KTIE DL AL SG + E + ++ + R ARTDKGVS
Sbjct: 67 AYSGKGYHGMQRNLGSSQFKTIEDDLVSALVRSGCIPENHGEDMKKMSFQRCARTDKGVS 126
Query: 124 AVGQVVSGRF-CIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVF 182
A GQ+VS + ID ++E++N++LP+ IRI G KRVT FN+K CD R Y Y+LP F
Sbjct: 127 AAGQIVSLKVRLIDD--ILEKINNHLPSHIRILGLKRVTGGFNSKNKCDARTYAYMLPTF 184
Query: 183 ALDSSSHRDRE 193
A +H+D +
Sbjct: 185 AF---AHKDHD 192
Score = 287 (106.1 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 58/129 (44%), Positives = 85/129 (65%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ N +L Y G+HNFHNFT++ +DPSARRYI+ EGI+F +V G
Sbjct: 203 ETLEKVNSLLARYKGTHNFHNFTSQKGPKDPSARRYIMEMYCGEPFVREGIEFAVIKVKG 262
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKMIGL +A+V+ AP+S+IE + ++ ++VP AP +GL L+ F YN+
Sbjct: 263 QSFMMHQIRKMIGLVIAIVKGYAPESIIERSWGEE-KVDVPKAPGLGLVLERVHFEKYNR 321
Query: 461 KWKDS--HE 467
++ + HE
Sbjct: 322 RFGNDGLHE 330
>UNIPROTKB|J9NVH5 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 EMBL:AAEX03014587
Ensembl:ENSCAFT00000047970 Uniprot:J9NVH5
Length = 398
Score = 313 (115.2 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 69/139 (49%), Positives = 89/139 (64%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E + R+ + R
Sbjct: 60 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQRC 119
Query: 116 ARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
ARTDKGVSA GQVVS + + ID ++E++NS+LP IRI G KRVT FN+K CD R
Sbjct: 120 ARTDKGVSAAGQVVSLKVWLIDD--ILEKINSHLPPHIRILGLKRVTGGFNSKNKCDART 177
Query: 175 YVYLLPVFALDSSSHRDRE 193
Y Y+LP FA +H+D +
Sbjct: 178 YFYMLPTFAF---AHKDHD 193
Score = 271 (100.5 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 56/129 (43%), Positives = 83/129 (64%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E +R N +L Y G+HNFHNFT++ ++ SARRYI+ + EG++F +V G
Sbjct: 204 ETLQRVNGLLACYKGTHNFHNFTSQKGPQEASARRYILDMFCEEPFVREGMEFAVIKVKG 263
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM HQIRKM+GL VA+V+ AP+S++E + D ++VP AP +GL L+ F YN+
Sbjct: 264 QSFMTHQIRKMVGLLVAIVKGYAPESVLERSWG-DAKVDVPKAPGLGLVLERVHFEKYNQ 322
Query: 461 KWKDS--HE 467
++ + HE
Sbjct: 323 RFGNDGLHE 331
>UNIPROTKB|E2QW32 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 OMA:CDARTYF EMBL:AAEX03014587
Ensembl:ENSCAFT00000010378 Uniprot:E2QW32
Length = 438
Score = 313 (115.2 bits), Expect = 9.1e-53, Sum P(2) = 9.1e-53
Identities = 69/139 (49%), Positives = 89/139 (64%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E + R+ + R
Sbjct: 93 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQRC 152
Query: 116 ARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
ARTDKGVSA GQVVS + + ID ++E++NS+LP IRI G KRVT FN+K CD R
Sbjct: 153 ARTDKGVSAAGQVVSLKVWLIDD--ILEKINSHLPPHIRILGLKRVTGGFNSKNKCDART 210
Query: 175 YVYLLPVFALDSSSHRDRE 193
Y Y+LP FA +H+D +
Sbjct: 211 YFYMLPTFAF---AHKDHD 226
Score = 271 (100.5 bits), Expect = 9.1e-53, Sum P(2) = 9.1e-53
Identities = 56/129 (43%), Positives = 83/129 (64%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E +R N +L Y G+HNFHNFT++ ++ SARRYI+ + EG++F +V G
Sbjct: 237 ETLQRVNGLLACYKGTHNFHNFTSQKGPQEASARRYILDMFCEEPFVREGMEFAVIKVKG 296
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM HQIRKM+GL VA+V+ AP+S++E + D ++VP AP +GL L+ F YN+
Sbjct: 297 QSFMTHQIRKMVGLLVAIVKGYAPESVLERSWG-DAKVDVPKAPGLGLVLERVHFEKYNQ 355
Query: 461 KWKDS--HE 467
++ + HE
Sbjct: 356 RFGNDGLHE 364
>UNIPROTKB|F5H1S9 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1
IPI:IPI00795171 ProteinModelPortal:F5H1S9 SMR:F5H1S9 PRIDE:F5H1S9
Ensembl:ENST00000542167 UCSC:uc001uji.3 ArrayExpress:F5H1S9
Bgee:F5H1S9 Uniprot:F5H1S9
Length = 374
Score = 277 (102.6 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 56/129 (43%), Positives = 84/129 (65%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +DPSA RYI+ + EG++F V G
Sbjct: 174 ETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKG 233
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 234 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 292
Query: 461 KWKDS--HE 467
++ + HE
Sbjct: 293 RFGNDGLHE 301
Score = 274 (101.5 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 69/165 (41%), Positives = 93/165 (56%)
Query: 33 STSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDL 89
STS +R P LC + ++F ++ Q+N G+ KTIE DL
Sbjct: 11 STSGGQRSKRPGVRDQPGQHHGDLCLQNIKSVFVSF-------FQRNVGSSQFKTIEDDL 63
Query: 90 EEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNL 148
AL SG + E + R+ + R ARTDKGVSA GQVVS + + ID ++E++NS+L
Sbjct: 64 VSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILEKINSHL 121
Query: 149 PTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 193
P+ IRI G KRVT FN+K CD R Y YLLP FA +H+DR+
Sbjct: 122 PSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAF---AHKDRD 163
>POMBASE|SPCC126.03 [details] [associations]
symbol:pus1 "tRNA pseudouridine synthase Lsp1"
species:4896 "Schizosaccharomyces pombe" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IGI;IDA] [GO:0006400 "tRNA
modification" evidence=IDA] [GO:0009982 "pseudouridine synthase
activity" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PomBase:SPCC126.03 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003723 GO:GO:0006400
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 EMBL:AJ251329
PIR:T40907 RefSeq:NP_588446.1 ProteinModelPortal:O94396
STRING:O94396 EnsemblFungi:SPCC126.03.1 GeneID:2539082
KEGG:spo:SPCC126.03 eggNOG:COG0101 HOGENOM:HOG000213984 KO:K06173
OMA:IRKMISM OrthoDB:EOG48KVMJ NextBio:20800254 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
Uniprot:O94396
Length = 534
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 134/406 (33%), Positives = 201/406 (49%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A YCG GY GMQ NP +KTIEGDL +A +GAVS + +P++ AR+ART
Sbjct: 43 KRKVACLVGYCGSGYHGMQLNPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVALARAART 102
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + ++ L+E++N +LP IR++ R SFN + +C+ R Y Y+
Sbjct: 103 DKGVHAAGNVISLKLIMEDEKLIEKVNEHLPPSIRLWDVIRTINSFNPRTYCESRIYEYM 162
Query: 179 LPVFAL--DSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDE 236
+P +A S +M + E + ++ R + GK + + E
Sbjct: 163 VPTYAFVPPKPSSILGNCIMKNSPMPAEPINKENINQLSRSLFYEEGKEFWDDYDIAAKE 222
Query: 237 NASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVE-NANSESVNETLV-ESRT 294
SL Q + V+ + R L + E+NK V + N + +S + +V E
Sbjct: 223 ILSLYEQ-DPEGFVNPYS-KRGAAALANSENNKGSEAGVSAKTNPDMDSDSSAIVNEFLK 280
Query: 295 SETVQNENTXXXXXXXXXXXXXVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYV 354
++V++E+ ER++ E +LK + + L YV
Sbjct: 281 PDSVEDESAGSKIDPSYRL-------ERALKHIE-VLKLKNYRISADRLSVIRETLNQYV 332
Query: 355 GSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGL 414
G HNFHNFT ++ R I SF A + +++ C+V GQSFMLHQIRKMI L
Sbjct: 333 GVHNFHNFTVGQAFHQKNSNRVIRSFTASDPFMIGDTEWISCKVHGQSFMLHQIRKMIAL 392
Query: 415 AVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
A+ VVR P I+ A +K IN+P P GL L+ F YN+
Sbjct: 393 AILVVRTGCPVERIQDAFKK-TKINIPKGPGFGLLLESPFFKGYNE 437
>DICTYBASE|DDB_G0290987 [details] [associations]
symbol:pus1 "tRNA pseudouridylate synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 dictyBase:DDB_G0290987
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AAFI02000174 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:XP_635437.1 ProteinModelPortal:Q54FA0
EnsemblProtists:DDB0231224 GeneID:8627937 KEGG:ddi:DDB_G0290987
InParanoid:Q54FA0 OMA:VEMVSIN Uniprot:Q54FA0
Length = 596
Score = 305 (112.4 bits), Expect = 2.2e-45, Sum P(2) = 2.2e-45
Identities = 73/206 (35%), Positives = 104/206 (50%)
Query: 2 ENAETNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRK 61
E+ T T + P Q P + K+S + +LI TT +++K
Sbjct: 92 ESTSTTTTTTENKR-KPNQPPPVRPPKLS-------KEELIELQNKTKITTDES--RKKK 141
Query: 62 IAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKG 121
+AI Y G Y GMQKNPG KT+E +LE ALF +G +S + ++ DW R ARTDKG
Sbjct: 142 VAIILGYSGTNYAGMQKNPGLKTVEEELEHALFRTGGISPDNMYYQQKVDWIRCARTDKG 201
Query: 122 VSAVGQVVSGRFCIDPP---GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
VSA+ VVS + + PP G+ LN LP I +F RV SF+AK D R Y+Y+
Sbjct: 202 VSAIRNVVSLKMEMGPPDFEGMKIALNKELPKDITVFHIMRVNNSFHAKNAVDARSYIYV 261
Query: 179 LPVFALDSSSHRDRESVMASLGSGNE 204
P + + +S++ +G E
Sbjct: 262 TPTHVFEPKFSKKNKSIVEEAANGGE 287
Score = 233 (87.1 bits), Expect = 2.2e-45, Sum P(2) = 2.2e-45
Identities = 55/160 (34%), Positives = 84/160 (52%)
Query: 321 ERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF 380
E + NG E + + + + N++L Y+G+H FHN+T+R ++ D S R I SF
Sbjct: 280 EEAANGGENNTQPP-WKFTSDTLSILNKVLSFYLGNHRFHNYTSRKESNDVSVFRKIHSF 338
Query: 381 GADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVR-----NCAPQSLIETALQKD 435
+EG++ + VVG+SFMLHQIRKMIG ++ +R +C + ++
Sbjct: 339 VCSEPFVLEGVEMVSINVVGESFMLHQIRKMIGCLISFIRKGMFEDCETRDQAFDQIKAY 398
Query: 436 VN-------INVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
+N +N+P AP GL LD CIF +NK H E
Sbjct: 399 INSTFEHTPLNLPMAPGAGLLLDYCIFNEWNKNNSSIHGE 438
Score = 50 (22.7 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 243 QVKVDTVVSTCNGDRHNTNLESVESNKTISESV---MVENANSESVNETLVESRTSETVQ 299
QVK + + + NTN S+E+N ESV + + +E+ +T++ +S + Q
Sbjct: 3 QVKEEVKDIEISENIENTNKRSLETNDDNVESVNKKLKTDDETETKTQTIISESSSSSEQ 62
Score = 49 (22.3 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 16/64 (25%), Positives = 27/64 (42%)
Query: 2 ENAETNTEKLPSPSLSPRQEPDPKRLKMSATSTSD----DERDLIPAAAGADSTTKRQLC 57
+ ET T+ + S S S ++P ++ + D DE D + + STT
Sbjct: 43 DETETKTQTIISESSSSSEQPKQQQQQQQQDEDEDEADEDELDKFEKESESTSTTTTTTE 102
Query: 58 KRRK 61
+RK
Sbjct: 103 NKRK 106
Score = 48 (22.0 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
Identities = 18/87 (20%), Positives = 37/87 (42%)
Query: 224 KRTYQLGLPSNDENA-SLNSQVKVD--------TVVSTCNGDRHNTNLESVESNKTISES 274
+ T + L +ND+N S+N ++K D T++S + + + + E
Sbjct: 18 ENTNKRSLETNDDNVESVNKKLKTDDETETKTQTIISESSSSSEQPKQQQQQQQQDEDED 77
Query: 275 VMVENANSESVNETLVESRTSETVQNE 301
E+ + E+ S T+ T +N+
Sbjct: 78 EADEDELDKFEKESESTSTTTTTTENK 104
Score = 42 (19.8 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 262 LESV-ESNKTISESVMVENANSESV--NETLVESRTSETVQNENT 303
+E V E K I S +EN N S+ N+ VES + ++ T
Sbjct: 1 MEQVKEEVKDIEISENIENTNKRSLETNDDNVESVNKKLKTDDET 45
>FB|FBgn0038811 [details] [associations]
symbol:CG4159 species:7227 "Drosophila melanogaster"
[GO:0004730 "pseudouridylate synthase activity" evidence=ISS]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:AE014297 GO:GO:0003723 GO:GO:0008033
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 OMA:CDARTYF
RefSeq:NP_001163664.1 UniGene:Dm.27944 ProteinModelPortal:E1JIR1
SMR:E1JIR1 EnsemblMetazoa:FBtr0302323 GeneID:42440
KEGG:dme:Dmel_CG4159 FlyBase:FBgn0038811 PhylomeDB:E1JIR1
GenomeRNAi:42440 NextBio:828799 Bgee:E1JIR1 Uniprot:E1JIR1
Length = 442
Score = 263 (97.6 bits), Expect = 7.1e-43, Sum P(2) = 7.1e-43
Identities = 63/148 (42%), Positives = 85/148 (57%)
Query: 37 DERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHS 96
DE+D A ++ KR+K AI +YCG Y GMQ+NPG +TIE +L +A+
Sbjct: 80 DEKDAANGVKRAPFDPADRI-KRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKH 138
Query: 97 GAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIF 155
++E + + R+ARTDKGVSA QV S + P L +E N++LP QIR+F
Sbjct: 139 KWITEDSFEQIQISCFQRAARTDKGVSAARQVCSVKL---PEELDLEAFNADLPQQIRLF 195
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFA 183
G +RVT FNAK C+ R Y Y LP A
Sbjct: 196 GVERVTKGFNAKDQCNARTYTYTLPTVA 223
Score = 252 (93.8 bits), Expect = 7.1e-43, Sum P(2) = 7.1e-43
Identities = 54/131 (41%), Positives = 84/131 (64%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF-GADSVVNVEGIDFL 394
F E ++ LK Y G+ NFHNFT++ DPS++R+I+SF ++ + + I+F+
Sbjct: 238 FRISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPSSKRFIMSFTSSEPFRSPQDIEFV 297
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454
+V GQSFMLHQIRKM+GLA+A+VR + +E AL ++ +++P AP +GL LD
Sbjct: 298 TLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTEE-RLDLPMAPGLGLVLDTVH 356
Query: 455 FASYNKKW-KD 464
+ YN ++ KD
Sbjct: 357 YERYNDRYGKD 367
Score = 49 (22.3 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 348 RILKHYVGSHNFHNFTTRTK-AEDPSARRYIISFGAD 383
R + ++G+ ++H++ TRT+ A PS+ + G D
Sbjct: 402 RNMLDWIGTLHYHSYDTRTEDAPPPSSEDKKVKGGDD 438
Score = 38 (18.4 bits), Expect = 4.7e-19, Sum P(2) = 4.7e-19
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 3 NAETNTEKLPSPSLSPRQE 21
NA T T LP+ + +P +E
Sbjct: 211 NARTYTYTLPTVAFAPFEE 229
>ZFIN|ZDB-GENE-041212-26 [details] [associations]
symbol:pus1 "pseudouridine synthase 1" species:7955
"Danio rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 ZFIN:ZDB-GENE-041212-26
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
EMBL:CR450803 IPI:IPI00502878 Ensembl:ENSDART00000144859
Bgee:F1QWW1 Uniprot:F1QWW1
Length = 412
Score = 266 (98.7 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
Identities = 59/140 (42%), Positives = 85/140 (60%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
++K+A+ AY G GY GMQ+N KTIE +L AL + + E ++ + RS
Sbjct: 75 KKKVALLMAYSGKGYYGMQRNARNSQFKTIEDELVTALVGARCIPEGHAEEMKKMSFQRS 134
Query: 116 ARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
ARTDKGVSAVGQVVS + + I+ ++E++N++LP QIR+ G KRVT FN+K C R
Sbjct: 135 ARTDKGVSAVGQVVSLKVWMIE--NILEKINAHLPPQIRVLGCKRVTGGFNSKNNCYART 192
Query: 175 YVYLLPVFALDSSSHRDRES 194
Y Y+LP A + ++
Sbjct: 193 YSYMLPTVAFSPKDYNQEDT 212
Score = 242 (90.2 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
Identities = 50/116 (43%), Positives = 70/116 (60%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLH 406
NR+ Y G+HNFHNFT++ DPSA RYI + ++F V GQSFM+H
Sbjct: 225 NRLFGLYKGTHNFHNFTSQKGHRDPSAMRYITHMSCGEPFIRKDVEFAVITVRGQSFMMH 284
Query: 407 QIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
QIRKMIGL +AVV+ + +IE + ++ + VP AP +GL L+ F YNK++
Sbjct: 285 QIRKMIGLVIAVVKGYVDEGVIEKSWGEE-KVGVPKAPGLGLVLERVHFDGYNKRF 339
>ASPGD|ASPL0000001573 [details] [associations]
symbol:AN6165 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=RCA] [GO:0004730 "pseudouridylate synthase activity"
evidence=RCA] [GO:0005634 "nucleus" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0031120 "snRNA pseudouridine synthesis"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 EMBL:BN001301 EMBL:AACD01000105
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
HOGENOM:HOG000213984 KO:K06173 OMA:IRKMISM OrthoDB:EOG48KVMJ
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:XP_663769.1 ProteinModelPortal:Q5AZW5
STRING:Q5AZW5 EnsemblFungi:CADANIAT00006845 GeneID:2871138
KEGG:ani:AN6165.2 Uniprot:Q5AZW5
Length = 574
Score = 267 (99.0 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 49/122 (40%), Positives = 78/122 (63%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY+GMQ + KTIEG+L A +GA+S+ + +P++ R ART
Sbjct: 78 KKKVAVLIGYSGTGYKGMQLSTTEKTIEGELFTAFVAAGAISKANAADPKKSSLVRCART 137
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G +VS + ++ P +V+++N +L QIR++G SF++ + CD R Y YL
Sbjct: 138 DKGVHAAGNIVSLKLIVEDPDIVQKINDHLSPQIRVWGILVANKSFSSYQMCDSRIYEYL 197
Query: 179 LP 180
+P
Sbjct: 198 IP 199
Score = 234 (87.4 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 50/126 (39%), Positives = 78/126 (61%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKCEVVGQSF 403
R + L YVG+ NF+N+T + + DPSA+R+I SF + + ++G ++L +V GQSF
Sbjct: 346 RIQQALDKYVGTKNFYNYTIQKQYRDPSAKRHIKSFKLNPEPIIIDGTEWLSLKVHGQSF 405
Query: 404 MLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
M+HQIRKM+ +A VVR C P + ++ + + +P AP +GL L+ +F YNKK
Sbjct: 406 MMHQIRKMVAMATMVVRCGCDPARINDS--YGEFKMAIPKAPGLGLLLERPVFDGYNKKA 463
Query: 463 KDSHEE 468
D +E
Sbjct: 464 ADLKKE 469
>SGD|S000006133 [details] [associations]
symbol:PUS1 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IPI]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IDA]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IMP]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 SGD:S000006133 GO:GO:0005634
GO:GO:0003723 EMBL:BK006949 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031120 GO:GO:0031119 eggNOG:COG0101 HOGENOM:HOG000213984
KO:K06173 OrthoDB:EOG48KVMJ Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:X80673 EMBL:Z73568
PIR:S65231 RefSeq:NP_015112.1 ProteinModelPortal:Q12211
DIP:DIP-5344N IntAct:Q12211 MINT:MINT-513680 STRING:Q12211
PaxDb:Q12211 PeptideAtlas:Q12211 EnsemblFungi:YPL212C GeneID:855889
KEGG:sce:YPL212C CYGD:YPL212c GeneTree:ENSGT00510000047706
OMA:TEWISIT NextBio:980559 Genevestigator:Q12211 GermOnline:YPL212C
Uniprot:Q12211
Length = 544
Score = 275 (101.9 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ + + ++ + R+ART
Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAART 133
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + I+ P + +++N LP IR++ +RV +F+ +K C R Y YL
Sbjct: 134 DKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWYEYL 193
Query: 179 LPVFAL 184
LP ++L
Sbjct: 194 LPTYSL 199
Score = 213 (80.0 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 45/119 (37%), Positives = 67/119 (56%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
+F Y+G+HNFHNFT ++PSA R++ I V+ +++ ++ GQS
Sbjct: 296 KFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHGQS 355
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FMLHQIRKM+ +A + R P I A + IN+P AP +GL L+ +F YNK+
Sbjct: 356 FMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEAPVFEGYNKR 413
>SGD|S000003031 [details] [associations]
symbol:PUS2 "Mitochondrial tRNA:pseudouridine synthase"
species:4932 "Saccharomyces cerevisiae" [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IGI;IMP]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IGI;IMP] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 SGD:S000003031 GO:GO:0005739 EMBL:BK006941
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
RefSeq:NP_011452.4 GeneID:852817 KEGG:sce:YGL063W KO:K15452
RefSeq:NP_011456.5 GeneID:852821 KEGG:sce:YGL059W eggNOG:COG0101
HOGENOM:HOG000213984 OrthoDB:EOG48KVMJ Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 EMBL:X80674 EMBL:Z72585 PIR:S64067
ProteinModelPortal:P53167 SMR:P53167 DIP:DIP-5022N MINT:MINT-499274
STRING:P53167 EnsemblFungi:YGL063W CYGD:YGL063w OMA:CFISSES
BioCyc:MetaCyc:MONOMER-16706 NextBio:972357 Genevestigator:P53167
GermOnline:YGL063W Uniprot:P53167
Length = 370
Score = 249 (92.7 bits), Expect = 3.7e-39, Sum P(2) = 3.7e-39
Identities = 52/121 (42%), Positives = 74/121 (61%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
+ YCG GY GMQ NP KTIEG++ LF GA+SE + P++ + +ARTDKGV
Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60
Query: 124 AVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
A+ ++S + + V +LN+ LP +IR++G + V FNA+ CD R Y YL+P F
Sbjct: 61 AMLNLLSLKITLRED-TVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQYLIPEFI 119
Query: 184 L 184
L
Sbjct: 120 L 120
Score = 224 (83.9 bits), Expect = 3.7e-39, Sum P(2) = 3.7e-39
Identities = 52/137 (37%), Positives = 73/137 (53%)
Query: 330 LLKG--SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVN 387
LL G SG+C + F ++ YVG+HNFHNFTT DPSA+R+I VV+
Sbjct: 185 LLSGTLSGYCLSPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSAQRHIKKV----VVS 240
Query: 388 VEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVG 447
++ + GQSFMLHQIR+M+ LAV R P +++ +P AP G
Sbjct: 241 QASPGWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQG 300
Query: 448 LYLDECIFASYNKKWKD 464
L L+ +F YN K ++
Sbjct: 301 LLLEGPVFDGYNTKLRN 317
>UNIPROTKB|G4N3B4 [details] [associations]
symbol:MGG_07663 "tRNA pseudouridine synthase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 EMBL:CM001233 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
RefSeq:XP_003711599.1 ProteinModelPortal:G4N3B4
EnsemblFungi:MGG_07663T0 GeneID:2683583 KEGG:mgr:MGG_07663
Uniprot:G4N3B4
Length = 720
Score = 213 (80.0 bits), Expect = 3.4e-35, Sum P(3) = 3.4e-35
Identities = 46/121 (38%), Positives = 71/121 (58%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKCEV 398
+E + L YVG+HNFHN+T K D SA+R+I SF + + + +++ +V
Sbjct: 500 QERIGKLQAALDKYVGTHNFHNYTILKKFTDSSAKRHIKSFKVNPEPIQIGETEWVSLKV 559
Query: 399 VGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASY 458
GQSFM+HQIRKM+ +AV VR P I + + I++P AP +GL L+ +F +Y
Sbjct: 560 HGQSFMMHQIRKMVAMAVLTVRCGVPLDRITQSYEAK-RISIPKAPGLGLLLERPVFENY 618
Query: 459 N 459
+
Sbjct: 619 S 619
Score = 179 (68.1 bits), Expect = 3.4e-35, Sum P(3) = 3.4e-35
Identities = 37/112 (33%), Positives = 56/112 (50%)
Query: 19 RQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQK 78
R D + ++D + A+ + ++K+A+ Y G GY+GMQ
Sbjct: 71 RDRDDRPNFPSKRSKNNEDPSSFMNIQFSAEEIAAEERKPKKKVAVLIGYAGTGYKGMQI 130
Query: 79 NPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS 130
N KTIEGDL A +GA+S+ + +P++ R ARTDKGV A V+S
Sbjct: 131 NHFEKTIEGDLFRAFVDAGAISKANASDPKKVSLMRCARTDKGVHAASNVIS 182
Score = 109 (43.4 bits), Expect = 3.4e-35, Sum P(3) = 3.4e-35
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 140 LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
LV R+NS+LP QIR++ R SF+ + CD R Y YL+P AL
Sbjct: 290 LVARINSHLPDQIRVWDILRTNNSFSCYQACDSRWYEYLMPTHAL 334
Score = 46 (21.3 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 263 ESVESNKTISESVMVE----NANSESVNETLVESRTSETVQNE 301
E VESN+ +E E NA + + E VES+ + E
Sbjct: 240 EKVESNEPAAEKPSTESLESNAATVAAEEPSVESKPDQKASEE 282
Score = 39 (18.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 21/114 (18%), Positives = 45/114 (39%)
Query: 186 SSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVK 245
+ + ++ V +G K ++ + + + G + + G S NAS +V
Sbjct: 105 AEERKPKKKVAVLIGYAGTGYKGMQINHFEKTIEGDLFRAFVDAGAISK-ANASDPKKVS 163
Query: 246 VDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQ 299
+ T G +N+ S++ + E + N N+E T + T+ V+
Sbjct: 164 LMRCARTDKGVHAASNVISLKLIVPLEEKELAGNGNAEKPAAT-ADGTTAGEVE 216
Score = 37 (18.1 bits), Expect = 1.6e-20, Sum P(3) = 1.6e-20
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 2 ENAETNTEKLPSPSLSPRQEPDPKRLKMSATSTSD 36
E+ E+N + + S +PD K + A + +D
Sbjct: 255 ESLESNAATVAAEEPSVESKPDQKASEEPAETMAD 289
>WB|WBGene00004248 [details] [associations]
symbol:pus-1 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AL021572 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
HOGENOM:HOG000031229 OMA:CDARTYF UniGene:Cel.1992 GeneID:180123
KEGG:cel:CELE_W06H3.2 UCSC:W06H3.2a CTD:180123 NextBio:908172
PIR:T26253 RefSeq:NP_507242.1 ProteinModelPortal:Q9XXN0 SMR:Q9XXN0
STRING:Q9XXN0 PRIDE:Q9XXN0 EnsemblMetazoa:W06H3.2a.1
EnsemblMetazoa:W06H3.2a.2 WormBase:W06H3.2a InParanoid:Q9XXN0
ArrayExpress:Q9XXN0 Uniprot:Q9XXN0
Length = 415
Score = 235 (87.8 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
Identities = 52/143 (36%), Positives = 80/143 (55%)
Query: 331 LKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVV---- 386
L S F E N IL Y+G+HNF N+T + +D S+ RYIISF
Sbjct: 167 LTNSSFRLSPETLAEVNSILSIYLGTHNFFNYTAKRAYDDMSSNRYIISFECKEPFLFRD 226
Query: 387 --NVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAP 444
E ++F++ + GQSF+LHQIRKM+G+ + V+R +S I+ + + +++P AP
Sbjct: 227 DFRKEDVEFVQIVIKGQSFVLHQIRKMVGMVITVIRELHLKSSIQRSFEGQ-RMDIPMAP 285
Query: 445 EVGLYLDECIFASYNKKWKDSHE 467
+GL L+ + SY++K SHE
Sbjct: 286 GLGLLLERTHYDSYDRKNSKSHE 308
Score = 193 (73.0 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
Identities = 56/167 (33%), Positives = 79/167 (47%)
Query: 45 AAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDR 104
+ G K+ K+ K A+ Y G Y GMQ TIE L EA+ +G ++ +
Sbjct: 18 SGGVHKEPKKPRVKQAKYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMETAGWITTAQK 77
Query: 105 GNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVER----LNSNLPTQIRIFGYKRV 160
P + + R+ARTD+ VSA Q+ + D LN+ LP IR+FG +R
Sbjct: 78 EKPFDFFFQRAARTDRAVSAARQMCGMQLPRDDAKYQAEGAGILNNILPADIRVFGMRRT 137
Query: 161 TASFNAKKFCDQRRYVYLLP--VFA----LDSSSHRDRESVMASLGS 201
T F+ +K CD R Y Y P VFA L +SS R +A + S
Sbjct: 138 TNFFHPQKQCDHRTYSYTCPSFVFAKPTELTNSSFRLSPETLAEVNS 184
Score = 45 (20.9 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 360 HNFTTRTKAEDPSARRYI 377
H+FT +AE+P + ++
Sbjct: 353 HDFTANAEAEEPEKKTFV 370
>POMBASE|SPBC887.11 [details] [associations]
symbol:pus2 "tRNA pseudouridine synthase Pus2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0009982 "pseudouridine synthase activity" evidence=ISO]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PomBase:SPBC887.11 GO:GO:0005634
GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K15452
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 PIR:T40736 RefSeq:NP_596485.1
ProteinModelPortal:O94295 EnsemblFungi:SPBC887.11.1 GeneID:2541236
KEGG:spo:SPBC887.11 OrthoDB:EOG4M952K NextBio:20802348
Uniprot:O94295
Length = 451
Score = 222 (83.2 bits), Expect = 5.3e-30, Sum P(3) = 5.3e-30
Identities = 51/147 (34%), Positives = 79/147 (53%)
Query: 328 EKLLKGSGF-CY-----GEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFG 381
+K LK + + CY E+ K ++LK Y G HNFHNFT + PS R+I S
Sbjct: 253 KKALKQAEYYCYMNYRIKEDRLKVLQQLLKKYEGRHNFHNFTVTDDSTSPSNYRFIESVT 312
Query: 382 ADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP 441
+ E +++ + G SFML+QIRKM+ + ++R+CAP LI+ A ++ +N+
Sbjct: 313 CGTPFVYENWEWIPVTIKGNSFMLNQIRKMMAHVLMIIRSCAPTGLIDKAFDPNITMNIS 372
Query: 442 TAPEVGLYLDECIFASYNKKWKDSHEE 468
+P L L + F+SYN D E+
Sbjct: 373 KSPGHVLLLKDIKFSSYNDSVTDGLEK 399
Score = 178 (67.7 bits), Expect = 5.3e-30, Sum P(3) = 5.3e-30
Identities = 47/128 (36%), Positives = 66/128 (51%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+I I Y G GY G+Q N KTIEGD+ L G + + + AR+ARTDK
Sbjct: 40 RIIILLGYSGYGYHGIQINNPLKTIEGDVVAVLKKLGYLKTNNI-DAEHLCIARAARTDK 98
Query: 121 GVSAVGQVVSGRFCIDPP---GLVE-RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
GV + ++S +D P L++ LN L +QIR++ FN + C+ R Y
Sbjct: 99 GVHTLRNLISLNLFVDKPLDISLLKTELNEALCSQIRVWSVFPAPKYFNPRISCESRTYE 158
Query: 177 YLLPVFAL 184
YL+P FAL
Sbjct: 159 YLIPSFAL 166
Score = 37 (18.1 bits), Expect = 5.3e-30, Sum P(3) = 5.3e-30
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 9 EKLPSPSL-SPRQEPDPKRLKMSATSTSDDERDLI 42
E +P+ L +P+ PKR K+ T S+ R +I
Sbjct: 12 EHIPAEDLETPKL---PKREKIEGTKESNKVRIII 43
>TAIR|locus:2065748 [details] [associations]
symbol:AT2G30320 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0008033 EMBL:AC002338
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
IPI:IPI00537336 PIR:A84707 RefSeq:NP_180591.1 UniGene:At.38371
ProteinModelPortal:O22928 PaxDb:O22928 PRIDE:O22928
EnsemblPlants:AT2G30320.1 GeneID:817582 KEGG:ath:AT2G30320
TAIR:At2g30320 HOGENOM:HOG000070648 InParanoid:O22928 OMA:IRKMVGT
PhylomeDB:O22928 ProtClustDB:PLN03078 Genevestigator:O22928
GermOnline:AT2G30320 Uniprot:O22928
Length = 510
Score = 232 (86.7 bits), Expect = 5.4e-30, Sum P(3) = 5.4e-30
Identities = 59/200 (29%), Positives = 102/200 (51%)
Query: 24 PKRLKMSATST-SDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQ---KN 79
P L+ S+++ L P ++ K + +++K+ I Y G Y+G+Q +
Sbjct: 26 PALLRFSSSAAFQPSSTSLSPPSSDNFLADKWESYRKKKVVIRIGYVGTDYRGLQIQRDD 85
Query: 80 PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCI---- 135
P KTIEG+LE A++ +G + + + G+ + WARS+RTDKGV ++ +S + I
Sbjct: 86 PSIKTIEGELEVAIYKAGGIRDSNYGDLHKIGWARSSRTDKGVHSLATSISLKMEIPETA 145
Query: 136 ---DPPG--LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHR 190
DP G L + ++ +LP IR+F F+ ++ C R+Y YLLPV L +
Sbjct: 146 WKDDPQGTVLAKCISKHLPENIRVFSVLPSNRRFDPRRECTLRKYSYLLPVDVLGIKNSF 205
Query: 191 DRESVMASLGSGNELVKCLE 210
+ + + NE++K E
Sbjct: 206 TSDEIDYHITDFNEILKEFE 225
Score = 139 (54.0 bits), Expect = 5.4e-30, Sum P(3) = 5.4e-30
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 387 NVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEV 446
N G F++ + G+SFMLHQIRKMIG AVAV R P+ +I +L K I +P AP
Sbjct: 337 NSLGFGFVEISIWGESFMLHQIRKMIGTAVAVKRELLPRDIIRLSLNKFTRIVLPLAPSE 396
Query: 447 GLYL 450
L L
Sbjct: 397 VLIL 400
Score = 68 (29.0 bits), Expect = 5.4e-30, Sum P(3) = 5.4e-30
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPSARR 375
FN ILK + G + FHN+T R++ S ++
Sbjct: 217 FNEILKEFEGEYPFHNYTQRSRYRRKSEQK 246
>POMBASE|SPCC16C4.06c [details] [associations]
symbol:SPCC16C4.06c "tRNA pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006400 "tRNA modification"
evidence=ISO] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PomBase:SPCC16C4.06c GO:GO:0005634 GO:GO:0005737 EMBL:CU329672
GO:GO:0003723 GO:GO:0006400 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 OMA:CFISSES PIR:T41096 RefSeq:NP_587916.1
ProteinModelPortal:O74451 EnsemblFungi:SPCC16C4.06c.1
GeneID:2539359 KEGG:spo:SPCC16C4.06c NextBio:20800524
Uniprot:O74451
Length = 413
Score = 186 (70.5 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 47/130 (36%), Positives = 70/130 (53%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
++R + +Y G G+ G+Q N KTI+ L +A GAV + + +P++ +AR
Sbjct: 35 RKRMVYCVVSYRGTGFAGLQYNANVKTIQDTLFQAFARVGAVVQVNADSPKKIRMCSAAR 94
Query: 118 TDKGVSAVGQVVSGRFCID--P-PGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
TDKGV A+ V+ G +D P P +V +N LP IR++ R SF+ CD R
Sbjct: 95 TDKGVHAIVNVL-GLKVLDNQPLPHVVNLVNDILPPCIRVWKMARTFNSFSPHTVCDSRV 153
Query: 175 YVYLLPVFAL 184
Y Y LPV +L
Sbjct: 154 YEYWLPVSSL 163
Score = 176 (67.0 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 41/125 (32%), Positives = 70/125 (56%)
Query: 350 LKH----YVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGID--FLKCEVVGQSF 403
LKH + G+H FH++TT D S+RR+++ D++ +++ ++ ++K GQSF
Sbjct: 220 LKHACTMFRGTHRFHSYTTEKGFSDASSRRFLLDVRVDNL-HIDKLNRQWVKLIFHGQSF 278
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW- 462
M HQIRKM+G+ + + R ++ I +P AP L L++ IF ++NKK
Sbjct: 279 MKHQIRKMVGILIHLTRTGWNAQVLLNTFNNSYRIRIPRAPAEFLLLNQPIFQAFNKKCS 338
Query: 463 KDSHE 467
+ HE
Sbjct: 339 RFDHE 343
>UNIPROTKB|F5GXL3 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020103 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1 IPI:IPI01010630
ProteinModelPortal:F5GXL3 Ensembl:ENST00000537484
ArrayExpress:F5GXL3 Bgee:F5GXL3 Uniprot:F5GXL3
Length = 200
Score = 233 (87.1 bits), Expect = 6.3e-19, P = 6.3e-19
Identities = 61/163 (37%), Positives = 81/163 (49%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEA 92
D E +G D +R+ +RKI + AY G GY GMQ+N G+ KTIE DL A
Sbjct: 33 DGEHPAKKLKSGGDEE-RREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSA 91
Query: 93 LFHSGAVSERDRGNPRRYDWARSARTDKGVSAV--GQVVSGRFCIDPPGLVERLNSNLPT 150
L SG + E + R+ + R ARTDK + ++ + L +SN P
Sbjct: 92 LVRSGCIPENHGEDMRKMSFQRCARTDKSQDLILLPRLECSGMIMAHCSLKLLGSSNPPA 151
Query: 151 QIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 193
G KRVT FN+K CD R Y YLLP FA +H+DR+
Sbjct: 152 SASRVGLKRVTGGFNSKNRCDARTYCYLLPTFAF---AHKDRD 191
>UNIPROTKB|F5GY32 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730 GO:GO:0003677
GO:GO:0045944 GO:GO:0003723 GO:GO:0005667 GO:GO:0030374
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 EMBL:AC131009
Gene3D:3.30.70.580 PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1
IPI:IPI01009368 ProteinModelPortal:F5GY32 SMR:F5GY32
Ensembl:ENST00000538037 ArrayExpress:F5GY32 Bgee:F5GY32
Uniprot:F5GY32
Length = 154
Score = 230 (86.0 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 56/125 (44%), Positives = 75/125 (60%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEA 92
D E +G D +R+ +RKI + AY G GY GMQ+N G+ KTIE DL A
Sbjct: 33 DGEHPAKKLKSGGDEE-RREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSA 91
Query: 93 LFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQ 151
L SG + E + R+ + R ARTDKGVSA GQVVS + + ID ++E++NS+LP+
Sbjct: 92 LVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILEKINSHLPSH 149
Query: 152 IRIFG 156
IRI G
Sbjct: 150 IRILG 154
>DICTYBASE|DDB_G0286567 [details] [associations]
symbol:DDB_G0286567 species:44689 "Dictyostelium
discoideum" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 dictyBase:DDB_G0286567 GO:GO:0003723 EMBL:AAFI02000089
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
RefSeq:XP_637536.1 ProteinModelPortal:Q54LM5
EnsemblProtists:DDB0187011 GeneID:8625675 KEGG:ddi:DDB_G0286567
InParanoid:Q54LM5 ProtClustDB:CLSZ2846682 Uniprot:Q54LM5
Length = 615
Score = 158 (60.7 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 58/220 (26%), Positives = 104/220 (47%)
Query: 1 MENAETNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRR 60
++ ++TN +P + D K+ S + S DLI + ++ L +
Sbjct: 90 IKESQTNYTSVPERGETEDIANDEKK---SNSPKSLHITDLIEFCNTHNQEIEQNLKDKS 146
Query: 61 K--IAIFFAYCGVGYQGMQKNPGAK--TIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
K +A+ FAY G Y G + + IE +E++L +G ++ + GN +R +RS+
Sbjct: 147 KKPMALCFAYNGSKYYGSSYSFDIRFPAIENLIEKSLIRNGHIALENIGNLKRIKLSRSS 206
Query: 117 RTDKGVSAVGQVVSGRFCID-----------PPG-LVERLNSNLPTQIRIFGYKRVTASF 164
RTDKGV +V V+S ID PP ++ +N LP+ IR+ + + +F
Sbjct: 207 RTDKGVHSVSTVISAFLLIDKETERLAQFGTPPQYFIDNINRYLPSDIRLISATKPSRTF 266
Query: 165 NAKKFCDQRRYVYLLPVFALDSSSHRDRESVMAS-LGSGN 203
A+ R Y YL+P+ L S S++++ +G+ +
Sbjct: 267 RARPASKSRVYNYLVPMDHLKDISIDRMNSILSNFIGTSS 306
Score = 104 (41.7 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 27/88 (30%), Positives = 50/88 (56%)
Query: 369 EDPSARRYIISFGADS-VVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSL 427
++P R I++F + V EG + + VVG SF+++QIRKM+G ++VV+ +
Sbjct: 390 KNPVNVRTIMNFYVEKETVLFEGKQWYRFVVVGDSFLMYQIRKMMGFFLSVVKGYQNEIG 449
Query: 428 IETALQKDVNINVPTAPEVGLYLDECIF 455
++ +L+ +I P +P L+L + F
Sbjct: 450 LQLSLKSPFSICSPISPPFPLFLYDVNF 477
Score = 60 (26.2 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 345 RFNRILKHYVGSHNFHNFT 363
R N IL +++G+ +FHN+T
Sbjct: 293 RMNSILSNFIGTSSFHNYT 311
>POMBASE|SPAC25B8.05 [details] [associations]
symbol:SPAC25B8.05 "tRNA-pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=ISO]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PomBase:SPAC25B8.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GO:GO:0003723 GO:GO:0016829 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000199032 OMA:KFSRCGR OrthoDB:EOG46T69C PIR:T50192
RefSeq:NP_594465.1 ProteinModelPortal:Q9UTB3 STRING:Q9UTB3
EnsemblFungi:SPAC25B8.05.1 GeneID:2541578 KEGG:spo:SPAC25B8.05
NextBio:20802672 Uniprot:Q9UTB3
Length = 450
Score = 180 (68.4 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 69/215 (32%), Positives = 99/215 (46%)
Query: 5 ETNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDE---RDLI--PAAAGADSTTKR----- 54
+ NT LP+ + + E + K+ + + + ++L+ A A S K
Sbjct: 26 QKNTNSLPNKEIEGKNEVIKNKNKLDNGNEIEPQHLSQELVLQHALQDASSLPKLKPVRP 85
Query: 55 -QLCKRRKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRY 110
QL K +A FAYCG Y G+ Q P T+EG + EAL + +++ P
Sbjct: 86 FQLEKTVFVAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLITD-----PSSC 140
Query: 111 DWARSARTDKGVSAVGQVVS--GRFCIDPPGLV-ERLNSNLPTQIRIFGYKRVTASFNAK 167
++R RTDKGVSA+GQV+S R P + + LN LP IRI GY F+A+
Sbjct: 141 SFSRCGRTDKGVSAMGQVISLNVRHSERRPIIYCDVLNRLLPADIRITGYAFPPEGFDAR 200
Query: 168 KFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSG 202
C QR Y YL S DR + A+L G
Sbjct: 201 FSCKQRHYKYLFTKDYPGGSLDIDRMNEAAALYLG 235
Score = 94 (38.1 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 37/132 (28%), Positives = 59/132 (44%)
Query: 339 GEEEKKRFNRILKHYVGSHNFHNFTTRTKAED-PSARRYIISFGADSVVNVEGIDFLKC- 396
G + R N Y+G H+F NF ++ + R I+S V+ ++ L
Sbjct: 219 GSLDIDRMNEAAALYLGEHDFRNFCKIDASKQITNYHRRILS---SKVICIDPSTGLYAF 275
Query: 397 EVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAP------EVGLYL 450
++ G +F+ HQ+R M+ + + + P SLI L D+ VPT P E L L
Sbjct: 276 DLQGTAFLWHQVRCMMAILFLIGQKLEPASLINDLL--DIK-KVPTKPIYDMASEYPLIL 332
Query: 451 DECIFASYNKKW 462
+C F N +W
Sbjct: 333 YDCDFD--NIEW 342
>RGD|1310757 [details] [associations]
symbol:Pus3 "pseudouridylate synthase 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISO] [GO:0031119
"tRNA pseudouridine synthesis" evidence=IEA;ISO] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 RGD:1310757
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:BC158693 EMBL:CH474007
IPI:IPI00194825 RefSeq:NP_001101604.1 UniGene:Rn.22763
STRING:B0BN58 Ensembl:ENSRNOT00000017648 GeneID:315554
KEGG:rno:315554 UCSC:RGD:1310757 NextBio:669414
Genevestigator:B0BN58 Uniprot:B0BN58
Length = 479
Score = 127 (49.8 bits), Expect = 7.1e-16, Sum P(3) = 7.1e-16
Identities = 35/74 (47%), Positives = 42/74 (56%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQENT-SNTIEEKLFEALIKTRLVESRQTSN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVS 130
RTDKGVSA GQV+S
Sbjct: 115 RTDKGVSAFGQVIS 128
Score = 117 (46.2 bits), Expect = 7.1e-16, Sum P(3) = 7.1e-16
Identities = 39/132 (29%), Positives = 59/132 (44%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAED-PSARRYIISFGADSVVNVEGID-----FLKC--EV 398
N + YVG+H+F N A + +R I+S +V G + F C EV
Sbjct: 209 NYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSAQVQTVAQSPGEEGRQGPFQLCQFEV 268
Query: 399 VGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECIF 455
+GQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C F
Sbjct: 269 IGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKF 328
Query: 456 ASYNKKWKDSHE 467
N KW HE
Sbjct: 329 E--NTKWIYDHE 338
Score = 72 (30.4 bits), Expect = 7.1e-16, Sum P(3) = 7.1e-16
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 144 LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
LN LP IR+ + SF+A+ C +R Y Y P LD
Sbjct: 163 LNRVLPADIRVLAWAPAEPSFSARFSCLERTYRYFFPCADLD 204
>MGI|MGI:1914299 [details] [associations]
symbol:Pus3 "pseudouridine synthase 3" species:10090 "Mus
musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IDA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IDA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 MGI:MGI:1914299 GO:GO:0005634 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 UniGene:Mm.482285 GO:GO:0031119
KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG OMA:NHAVKTH EMBL:AF266505
EMBL:AK079095 EMBL:BC029253 IPI:IPI00331619 RefSeq:NP_075781.3
UniGene:Mm.425574 ProteinModelPortal:Q9JI38 SMR:Q9JI38
STRING:Q9JI38 PhosphoSite:Q9JI38 PRIDE:Q9JI38
Ensembl:ENSMUST00000034615 GeneID:67049 KEGG:mmu:67049
UCSC:uc009oth.2 GeneTree:ENSGT00510000047444 InParanoid:Q9JI38
BRENDA:4.2.1.70 NextBio:323424 Bgee:Q9JI38 CleanEx:MM_PUS3
Genevestigator:Q9JI38 GermOnline:ENSMUSG00000032103 Uniprot:Q9JI38
Length = 481
Score = 132 (51.5 bits), Expect = 1.6e-15, Sum P(3) = 1.6e-15
Identities = 49/134 (36%), Positives = 63/134 (47%)
Query: 2 ENAETNT-EKLPSPSLSPRQEPDP-KRLKMSATSTSDDE-RDLIPAAAGADSTTKRQLCK 58
EN + N EKL + QE + K+ K A + D R+ + A
Sbjct: 3 ENTDRNQIEKLLNRVKELEQEVERLKKKKEQANNIKDSSIRENSLGSGKAKRAFDFSAHG 62
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 63 RRHVALKIAYLGWGYQGFASQENT-SNTIEEKLFEALTKTRLVESRQTSN-----YHRCG 116
Query: 117 RTDKGVSAVGQVVS 130
RTDKGVSA GQV+S
Sbjct: 117 RTDKGVSAFGQVIS 130
Score = 106 (42.4 bits), Expect = 1.6e-15, Sum P(3) = 1.6e-15
Identities = 38/132 (28%), Positives = 56/132 (42%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEGID-----FLKC--EV 398
N + YVG+H+F N A + +R I+ V G + F C EV
Sbjct: 211 NYAAQKYVGTHDFRNLCKMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEV 270
Query: 399 VGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECIF 455
+GQ+F+ HQ+R M+ + + + +I+ L N P A E L L +C F
Sbjct: 271 IGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQKNPQKPQYSMAVEFPLVLYDCKF 330
Query: 456 ASYNKKWKDSHE 467
N KW HE
Sbjct: 331 E--NTKWIYDHE 340
Score = 74 (31.1 bits), Expect = 1.6e-15, Sum P(3) = 1.6e-15
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 144 LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
LN LP IR+ + V SF+A+ C +R Y Y P LD
Sbjct: 165 LNRVLPADIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLD 206
>UNIPROTKB|F1N5P3 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9913 "Bos
taurus" [GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
IPI:IPI00688075 UniGene:Bt.33259 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:DAAA02063102
Ensembl:ENSBTAT00000019065 Uniprot:F1N5P3
Length = 481
Score = 139 (54.0 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 48/136 (35%), Positives = 67/136 (49%)
Query: 4 AETNTEKLPSPSLSPRQ---EPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLC--- 57
AE + +++ + L R E + KRLK + D ++ ++GA KR
Sbjct: 2 AENDVDRIQTEKLLKRVQELEQEVKRLKKEQANNKDS--NIRENSSGAGGKPKRAFDFSA 59
Query: 58 -KRRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
+R +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 60 HGQRHVALKIAYLGWGYQGFASQENT-SNTIEEKLFEALTKTRLVENRQTSN-----YHR 113
Query: 115 SARTDKGVSAVGQVVS 130
RTDKGVSA GQV+S
Sbjct: 114 CGRTDKGVSAFGQVIS 129
Score = 98 (39.6 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 38/127 (29%), Positives = 56/127 (44%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDP-SARRYIISFGADSV---VNVEGID--FLKC--EV 398
N + YVG+H+F N A + +R I+S V + EG F C EV
Sbjct: 210 NYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEV 269
Query: 399 VGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECIF 455
GQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C F
Sbjct: 270 TGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCKF 329
Query: 456 ASYNKKW 462
N KW
Sbjct: 330 E--NIKW 334
Score = 74 (31.1 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 144 LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
LN LP IR+ + V SF+A+ C +R Y Y P LD
Sbjct: 164 LNRVLPPDIRVLAWAPVETSFSARFSCLERTYRYFFPRANLD 205
Score = 37 (18.1 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 27/119 (22%), Positives = 52/119 (43%)
Query: 187 SSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPS-NDENASLNSQVK 245
++H + ++ S+ G + V L C G K+ G++ R + PS + ++ VK
Sbjct: 353 ANHAVKTQMLYSMLQGLDSV-ALPCGT-GPKMDGMIEWRNVK---PSVTKQTSAFVEGVK 407
Query: 246 VDTVVSTCNGDRHNTNLESVESN-KTISESVMVENANSESVNETLVESRTSETVQNENT 303
+ T DR + +ES + +E+ + ET + S+T++ ENT
Sbjct: 408 MRTYKPLM--DR--PKCQGLESRIQHFVRRGRIEHPHLFHEEETKAKRDCSDTLEEENT 462
>UNIPROTKB|Q3SX07 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005634 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:BC104569 IPI:IPI00688075
RefSeq:NP_001029684.1 UniGene:Bt.33259 ProteinModelPortal:Q3SX07
STRING:Q3SX07 PRIDE:Q3SX07 GeneID:515824 KEGG:bta:515824 CTD:83480
HOGENOM:HOG000199032 HOVERGEN:HBG053769 InParanoid:Q3SX07
OrthoDB:EOG4B2SXG NextBio:20872016 Uniprot:Q3SX07
Length = 481
Score = 139 (54.0 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 48/136 (35%), Positives = 67/136 (49%)
Query: 4 AETNTEKLPSPSLSPRQ---EPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLC--- 57
AE + +++ + L R E + KRLK + D ++ ++GA KR
Sbjct: 2 AENDVDRIQTEKLLKRVQELEQEVKRLKKEQANNKDS--NIRENSSGAGGKPKRAFDFSA 59
Query: 58 -KRRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
+R +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 60 HGQRHVALKIAYLGWGYQGFASQENT-SNTIEEKLFEALTKTRLVENRQTSN-----YHR 113
Query: 115 SARTDKGVSAVGQVVS 130
RTDKGVSA GQV+S
Sbjct: 114 CGRTDKGVSAFGQVIS 129
Score = 98 (39.6 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 38/127 (29%), Positives = 56/127 (44%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDP-SARRYIISFGADSV---VNVEGID--FLKC--EV 398
N + YVG+H+F N A + +R I+S V + EG F C EV
Sbjct: 210 NYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEV 269
Query: 399 VGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECIF 455
GQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C F
Sbjct: 270 TGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCKF 329
Query: 456 ASYNKKW 462
N KW
Sbjct: 330 E--NIKW 334
Score = 74 (31.1 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 144 LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
LN LP IR+ + V SF+A+ C +R Y Y P LD
Sbjct: 164 LNRVLPPDIRVLAWAPVETSFSARFSCLERTYRYFFPRANLD 205
Score = 37 (18.1 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 27/119 (22%), Positives = 52/119 (43%)
Query: 187 SSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPS-NDENASLNSQVK 245
++H + ++ S+ G + V L C G K+ G++ R + PS + ++ VK
Sbjct: 353 ANHAVKTQMLYSMLQGLDSV-ALPCGT-GPKMDGMIEWRNVK---PSVTKQTSAFVEGVK 407
Query: 246 VDTVVSTCNGDRHNTNLESVESN-KTISESVMVENANSESVNETLVESRTSETVQNENT 303
+ T DR + +ES + +E+ + ET + S+T++ ENT
Sbjct: 408 MRTYKPLM--DR--PKCQGLESRIQHFVRRGRIEHPHLFHEEETKAKRDCSDTLEEENT 462
>UNIPROTKB|E2RGS6 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AAEX03003383 RefSeq:XP_536533.1
ProteinModelPortal:E2RGS6 Ensembl:ENSCAFT00000016731 GeneID:479397
KEGG:cfa:479397 NextBio:20854586 Uniprot:E2RGS6
Length = 480
Score = 136 (52.9 bits), Expect = 4.7e-15, Sum P(3) = 4.7e-15
Identities = 48/133 (36%), Positives = 62/133 (46%)
Query: 4 AETNTEKLPSPSLSPRQ---EPDPKRLKMSATSTSDDE-RDLIPAAAGADSTTKRQLCKR 59
AE +T++L L R E + +RLK + D R+ A A R
Sbjct: 2 AENDTDRLQIEKLLKRVQELEEEVQRLKKEQANNKDSNARENSLGARKAKRAFDFSAHGR 61
Query: 60 RKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
R +A+ AY G GYQG Q+N TIE L +AL + V R N + R R
Sbjct: 62 RHVALKIAYLGWGYQGFASQENTN-NTIEEKLFDALTKTRLVESRQTSN-----YHRCGR 115
Query: 118 TDKGVSAVGQVVS 130
TDKGVSA GQV+S
Sbjct: 116 TDKGVSAFGQVIS 128
Score = 98 (39.6 bits), Expect = 4.7e-15, Sum P(3) = 4.7e-15
Identities = 36/128 (28%), Positives = 55/128 (42%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGID-------FLKC--E 397
N + YVG+H+F N A + + F +V + +D F C E
Sbjct: 209 NYAAQKYVGTHDFRNLCKMDVANGVINFQRTVLFAQVELVG-QSLDKEQWQEPFQLCQFE 267
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECI 454
VVGQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C
Sbjct: 268 VVGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 327
Query: 455 FASYNKKW 462
F N KW
Sbjct: 328 FE--NVKW 333
Score = 73 (30.8 bits), Expect = 4.7e-15, Sum P(3) = 4.7e-15
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 144 LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
LN LP IR+ + V SF+A+ C +R Y Y P LD
Sbjct: 163 LNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLD 204
>UNIPROTKB|F1S759 [details] [associations]
symbol:LOC100739830 "tRNA pseudouridine synthase"
species:9823 "Sus scrofa" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 OMA:NHAVKTH GeneTree:ENSGT00510000047444
EMBL:CU928873 RefSeq:XP_003482688.1 Ensembl:ENSSSCT00000016588
GeneID:100739830 KEGG:ssc:100739830 Uniprot:F1S759
Length = 479
Score = 136 (52.9 bits), Expect = 5.9e-15, Sum P(3) = 5.9e-15
Identities = 46/133 (34%), Positives = 63/133 (47%)
Query: 4 AETNTEKLPSPSLSPRQ---EPDPKRLKMSATSTSDDE-RDLIPAAAGADSTTKRQLCKR 59
AE + +++ + L R E + +RLK + D + R+ A R
Sbjct: 2 AENDIDRIQTEKLLKRVQELEQEVQRLKQEQANNKDSKVRESSSGGRRAKRAFDFSAHGR 61
Query: 60 RKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
R +A+ AY G GYQG Q+N + TIE L EAL + V R N + R R
Sbjct: 62 RHVALKIAYLGWGYQGFASQENT-SNTIEEKLFEALTKTRLVENRQTSN-----YHRCGR 115
Query: 118 TDKGVSAVGQVVS 130
TDKGVSA GQV+S
Sbjct: 116 TDKGVSAFGQVIS 128
Score = 97 (39.2 bits), Expect = 5.9e-15, Sum P(3) = 5.9e-15
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 347 NRILKHYVGSHNFHNF--------TTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEV 398
N + YVG+H+F N T + SA+ ++S + E + EV
Sbjct: 209 NYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSAQVQLLSQSLEEERWQEAFQLCQFEV 268
Query: 399 VGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECIF 455
VGQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C F
Sbjct: 269 VGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCKF 328
Query: 456 ASYNKKW 462
N KW
Sbjct: 329 E--NIKW 333
Score = 73 (30.8 bits), Expect = 5.9e-15, Sum P(3) = 5.9e-15
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 144 LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
LN LP IR+ + V SF+A+ C +R Y Y P LD
Sbjct: 163 LNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPHADLD 204
>UNIPROTKB|Q9BZE2 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0005634 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG EMBL:AF325689 EMBL:AK055702
EMBL:AK314251 EMBL:BC004822 EMBL:BC013427 IPI:IPI00306260
RefSeq:NP_112597.3 UniGene:Hs.660922 ProteinModelPortal:Q9BZE2
SMR:Q9BZE2 STRING:Q9BZE2 PhosphoSite:Q9BZE2 DMDM:126302589
PaxDb:Q9BZE2 PRIDE:Q9BZE2 DNASU:83480 Ensembl:ENST00000227474
Ensembl:ENST00000530811 GeneID:83480 KEGG:hsa:83480 UCSC:uc001qcy.2
GeneCards:GC11M125763 H-InvDB:HIX0010246 HGNC:HGNC:25461
HPA:HPA038040 neXtProt:NX_Q9BZE2 PharmGKB:PA134874048
InParanoid:Q9BZE2 OMA:NHAVKTH PhylomeDB:Q9BZE2 GenomeRNAi:83480
NextBio:72425 ArrayExpress:Q9BZE2 Bgee:Q9BZE2 CleanEx:HS_PUS3
Genevestigator:Q9BZE2 GermOnline:ENSG00000110060 Uniprot:Q9BZE2
Length = 481
Score = 137 (53.3 bits), Expect = 7.4e-15, Sum P(3) = 7.4e-15
Identities = 44/115 (38%), Positives = 57/115 (49%)
Query: 21 EPDPKRLKMSATSTSDDERDLIPAAAGADSTTKR---QLCKRRKIAIFFAYCGVGYQGM- 76
E + +RLK +D ++ +AGA T + RR +A+ AY G GYQG
Sbjct: 22 EQEVQRLKKEQAKNKEDS-NIRENSAGAGKTKRAFDFSAHGRRHVALRIAYMGWGYQGFA 80
Query: 77 -QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS 130
Q+N TIE L EAL + V R N + R RTDKGVSA GQV+S
Sbjct: 81 SQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCGRTDKGVSAFGQVIS 129
Score = 94 (38.1 bits), Expect = 7.4e-15, Sum P(3) = 7.4e-15
Identities = 36/121 (29%), Positives = 52/121 (42%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEGID-----FLKC--EVVGQSFM 404
YVG+H+F N A + +R I+S V G F C EV GQ+F+
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFL 275
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECIFASYNKK 461
HQ+R M+ + + + +I+ L + N P A E L L +C F N K
Sbjct: 276 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFE--NVK 333
Query: 462 W 462
W
Sbjct: 334 W 334
Score = 74 (31.1 bits), Expect = 7.4e-15, Sum P(3) = 7.4e-15
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 144 LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
LN LP IRI + V SF+A+ C +R Y Y P LD
Sbjct: 164 LNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLD 205
>UNIPROTKB|F1RVF1 [details] [associations]
symbol:LOC100739830 "tRNA pseudouridine synthase"
species:9823 "Sus scrofa" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047444 OMA:CQVISID
Ensembl:ENSSSCT00000012144 Uniprot:F1RVF1
Length = 479
Score = 136 (52.9 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 46/133 (34%), Positives = 63/133 (47%)
Query: 4 AETNTEKLPSPSLSPRQ---EPDPKRLKMSATSTSDDE-RDLIPAAAGADSTTKRQLCKR 59
AE + +++ + L R E + +RLK + D + R+ A R
Sbjct: 2 AENDIDRIQTEKLLKRVQELEQEVQRLKQEQANNKDSKVRESSSGGRRAKRAFDFSAHGR 61
Query: 60 RKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
R +A+ AY G GYQG Q+N + TIE L EAL + V R N + R R
Sbjct: 62 RHVALKIAYLGWGYQGFASQENT-SNTIEEKLFEALTKTRLVENRQTSN-----YHRCGR 115
Query: 118 TDKGVSAVGQVVS 130
TDKGVSA GQV+S
Sbjct: 116 TDKGVSAFGQVIS 128
Score = 90 (36.7 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 34/127 (26%), Positives = 54/127 (42%)
Query: 347 NRILKHYVGSHNFHNF--------TTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEV 398
N + YVG+H+F N T + SA+ ++S + E + EV
Sbjct: 209 NYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSAQVQLLSQSLEEERWQEAFQLCQFEV 268
Query: 399 VGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNIN---VPTAPEVGLYLDECIF 455
VGQ+F+ HQ+R M+ + + + +I+ L + N A E L L +C F
Sbjct: 269 VGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKNPQKHQYSMAVEFPLVLYDCKF 328
Query: 456 ASYNKKW 462
N KW
Sbjct: 329 E--NIKW 333
Score = 73 (30.8 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 144 LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
LN LP IR+ + V SF+A+ C +R Y Y P LD
Sbjct: 163 LNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPHADLD 204
>UNIPROTKB|F1P3X5 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AADN02042043 EMBL:AADN02042044
IPI:IPI00588906 Ensembl:ENSGALT00000001417 Uniprot:F1P3X5
Length = 379
Score = 126 (49.4 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 35/74 (47%), Positives = 43/74 (58%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N + TIE L EAL + V +R N + R
Sbjct: 58 RRHVALRIAYLGWGYQGFASQENT-SNTIEEKLFEALKKTRLVDDRQTSN-----YHRCG 111
Query: 117 RTDKGVSAVGQVVS 130
RTDKGVSA GQV+S
Sbjct: 112 RTDKGVSAFGQVIS 125
Score = 92 (37.4 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 35/128 (27%), Positives = 57/128 (44%)
Query: 351 KHYVGSHNFHNFTTRTKAEDP-SARRYIISF-------GADSVVNVEGIDFLKCEVVGQS 402
+ YVG+H+F N A + +R I+S GA+S + + + EV GQ+
Sbjct: 212 QRYVGTHDFRNLCKMDVANGVINFQRTILSAQVTWADGGAESGLR-DPFRLCQFEVTGQA 270
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECIFASYN 459
F+ HQ+R M+ + + + +I+ L + N P A E L L +C F N
Sbjct: 271 FLYHQVRCMMAILFLIGQRMEGPEIIDELLDVEKNPRKPQYSMAVEFPLVLYDCEFE--N 328
Query: 460 KKWKDSHE 467
+W E
Sbjct: 329 IQWHYDRE 336
Score = 70 (29.7 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 144 LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
LN LP IR+ + V F+A+ C +R Y Y P LD
Sbjct: 162 LNRVLPPDIRVLAWAPVEPDFSARFSCLKRTYRYFFPCADLD 203
>DICTYBASE|DDB_G0281619 [details] [associations]
symbol:DDB_G0281619 "tRNA pseudouridine synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 dictyBase:DDB_G0281619
GO:GO:0003723 EMBL:AAFI02000042 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 ProtClustDB:CLSZ2846682
RefSeq:XP_640538.1 ProteinModelPortal:Q54TQ3
EnsemblProtists:DDB0304450 GeneID:8623148 KEGG:ddi:DDB_G0281619
InParanoid:Q54TQ3 OMA:FINGHIA Uniprot:Q54TQ3
Length = 504
Score = 183 (69.5 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 61/244 (25%), Positives = 108/244 (44%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAK--TIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
K+ +A+ F Y G GY G+ K +IE +E+ LF G + + G +R W+ S
Sbjct: 87 KKLSVAMVFGYDGTGYYGLGYQVDIKYPSIENLIEKVLFRCGHILPSNVGELKRLKWSHS 146
Query: 116 ARTDKGVSAVGQVVSGRFCIDP--------PGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
+RTDKGV ++ V+S +D ++ +N+ LP+ IR+F +V+ SF A+
Sbjct: 147 SRTDKGVHSLATVISCFLVVDDNTFKNDINQTFIDTINNYLPSSIRLFSACKVSRSFQAR 206
Query: 168 KFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTY 227
K +R Y Y++P L++ + ++ + N S+R + K
Sbjct: 207 KKGIERSYNYMVPSEYLNNIKIDEMNKILQNFIGINSYHNFT--SKRNTYLSNNNNKNHE 264
Query: 228 QLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNE 287
+ DE + + + D V N + +N+N E + S + N S V
Sbjct: 265 K---DEKDEEDG-DEEEEEDDEVEVENSNNNNSNYRLNEKLLFRNNSTNIRNIKSFYVEN 320
Query: 288 TLVE 291
++E
Sbjct: 321 EIIE 324
Score = 136 (52.9 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 34/116 (29%), Positives = 66/116 (56%)
Query: 339 GEEEKKRFNRILKHYVGSHNFHNFTTRTKA--EDPSAR-RYIISFGADS-VVNVEGIDFL 394
G+EE++ + + ++N N+ K + S R I SF ++ ++ ++G +
Sbjct: 273 GDEEEEEDDEVEVENSNNNN-SNYRLNEKLLFRNNSTNIRNIKSFYVENEIIEIKGKGWY 331
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
K ++G+SF+L+QIR+M+G +++V+ + +E +L+ +I VPTAP LYL
Sbjct: 332 KFVIIGESFILYQIRRMVGFFLSIVKGYSTVEALELSLKSPFSICVPTAPPFPLYL 387
>ZFIN|ZDB-GENE-030131-9433 [details] [associations]
symbol:pus3 "pseudouridylate synthase 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 ZFIN:ZDB-GENE-030131-9433 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG EMBL:BC049516 IPI:IPI00509994
RefSeq:NP_956361.1 UniGene:Dr.79340 ProteinModelPortal:Q7ZW97
PRIDE:Q7ZW97 GeneID:337487 KEGG:dre:337487 InParanoid:Q7ZW97
NextBio:20812266 ArrayExpress:Q7ZW97 Bgee:Q7ZW97 Uniprot:Q7ZW97
Length = 460
Score = 104 (41.7 bits), Expect = 6.7e-10, Sum P(3) = 6.7e-10
Identities = 30/74 (40%), Positives = 40/74 (54%)
Query: 59 RRKIAIFFAYCGVGYQG--MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G YQG +Q+N T+E L EAL + + +R + R
Sbjct: 57 RRHVALRLAYLGWQYQGFAVQENTD-NTVEARLFEALLKTKLIQDRQTSC-----YHRCG 110
Query: 117 RTDKGVSAVGQVVS 130
RTDKGVSA QV+S
Sbjct: 111 RTDKGVSAFSQVIS 124
Score = 81 (33.6 bits), Expect = 6.7e-10, Sum P(3) = 6.7e-10
Identities = 24/66 (36%), Positives = 31/66 (46%)
Query: 121 GVSAVGQV-VSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
GV+ V V G+ D V+ LN LP IRI + V + F+A+ C R Y Y
Sbjct: 137 GVTVPADVDVKGKTSADELPYVKILNRVLPHDIRILQWAPVESGFSARFDCQSRTYRYYF 196
Query: 180 PVFALD 185
P LD
Sbjct: 197 PRGDLD 202
Score = 74 (31.1 bits), Expect = 6.7e-10, Sum P(3) = 6.7e-10
Identities = 32/143 (22%), Positives = 56/143 (39%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDP-SARRYIISFGADSV------VNV 388
F G+ + + K Y G+H+F N +R I+S V+
Sbjct: 196 FPRGDLDLELMAEAAKRYEGTHDFRNLCKMDVGNGVLQFQRTILSASVQPAQLPHPSVHN 255
Query: 389 EGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APE 445
+ +V G + + HQ+R M+ L + + + +I+ L + N P A +
Sbjct: 256 DPHQLFVFQVKGLALLYHQVRCMMALLLLIGQKLEAPEVIDQLLDVEKNPRKPQYSMAVD 315
Query: 446 VGLYLDECIFASYNKKWKDSHEE 468
L L +C F N W++ EE
Sbjct: 316 YPLVLYDCHFEGVN--WRNEIEE 336
>DICTYBASE|DDB_G0288909 [details] [associations]
symbol:pus3 "tRNA pseudouridylate synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0006396 "RNA
processing" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0004730 "pseudouridylate
synthase activity" evidence=ISS] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 dictyBase:DDB_G0288909 GO:GO:0005634 GO:GO:0005737
EMBL:AAFI02000126 GenomeReviews:CM000154_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008033 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0004730 KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
RefSeq:XP_636482.1 ProteinModelPortal:Q54I97 STRING:Q54I97
EnsemblProtists:DDB0231223 GeneID:8626865 KEGG:ddi:DDB_G0288909
InParanoid:Q54I97 OMA:PPYEMAS Uniprot:Q54I97
Length = 491
Score = 103 (41.3 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 36/121 (29%), Positives = 55/121 (45%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
K Y+G HN+ NF + S R I+ F + V N E + G +F+ HQIR
Sbjct: 265 KLYLGEHNYINFC-KIDVNVKSFMRVILQFDIEKVENSE---LYVATIKGFAFLWHQIRC 320
Query: 411 MIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECIFASYNKKWKDSHE 467
M+ + + + A SLI L + I P A EV L L +C + + ++ S +
Sbjct: 321 MMAVLFLIGQKKANISLITQLLDTNKTITKPPYEMASEVPLVLFDCGYDDIDFIYESSVQ 380
Query: 468 E 468
E
Sbjct: 381 E 381
Score = 90 (36.7 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
C +R +A +Y G + G ++ +TIE L +A + + + N + +S
Sbjct: 82 CYKRHVAFKLSYVGWPFFGFAAQDCSEETIENYLIKAFLKTSLIPDIKTAN-----YFKS 136
Query: 116 ARTDKGVSAVGQVVS 130
RTDKGVSA GQV+S
Sbjct: 137 GRTDKGVSAYGQVIS 151
Score = 65 (27.9 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 141 VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLG 200
++ LN LP +IRI + V FNA+ R Y Y LD + ++ + LG
Sbjct: 212 IKMLNGVLPPEIRILAWAPVPFHFNARFSTLSRTYKYFFNPNGLDLNLMKEASKLY--LG 269
Query: 201 SGNELVKC 208
N + C
Sbjct: 270 EHNYINFC 277
>UNIPROTKB|F5H168 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020103 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1 IPI:IPI01010216
ProteinModelPortal:F5H168 SMR:F5H168 Ensembl:ENST00000535067
ArrayExpress:F5H168 Bgee:F5H168 Uniprot:F5H168
Length = 134
Score = 148 (57.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 36/88 (40%), Positives = 47/88 (53%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEA 92
D E +G D +R+ +RKI + AY G GY GMQ+N G+ KTIE DL A
Sbjct: 33 DGEHPAKKLKSGGDEE-RREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSA 91
Query: 93 LFHSGAVSERDRGNPRRYDWARSARTDK 120
L SG + E + R+ + R ARTDK
Sbjct: 92 LVRSGCIPENHGEDMRKMSFQRCARTDK 119
>UNIPROTKB|F5H1B2 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020103 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1 IPI:IPI01009817
ProteinModelPortal:F5H1B2 SMR:F5H1B2 Ensembl:ENST00000544213
ArrayExpress:F5H1B2 Bgee:F5H1B2 Uniprot:F5H1B2
Length = 184
Score = 148 (57.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 36/88 (40%), Positives = 47/88 (53%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEA 92
D E +G D +R+ +RKI + AY G GY GMQ+N G+ KTIE DL A
Sbjct: 61 DGEHPAKKLKSGGDEE-RREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSA 119
Query: 93 LFHSGAVSERDRGNPRRYDWARSARTDK 120
L SG + E + R+ + R ARTDK
Sbjct: 120 LVRSGCIPENHGEDMRKMSFQRCARTDK 147
>UNIPROTKB|F8W9U5 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020103 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1 IPI:IPI01009394
ProteinModelPortal:F8W9U5 SMR:F8W9U5 Ensembl:ENST00000456665
ArrayExpress:F8W9U5 Bgee:F8W9U5 Uniprot:F8W9U5
Length = 156
Score = 148 (57.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 36/88 (40%), Positives = 47/88 (53%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEA 92
D E +G D +R+ +RKI + AY G GY GMQ+N G+ KTIE DL A
Sbjct: 33 DGEHPAKKLKSGGDEE-RREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSA 91
Query: 93 LFHSGAVSERDRGNPRRYDWARSARTDK 120
L SG + E + R+ + R ARTDK
Sbjct: 92 LVRSGCIPENHGEDMRKMSFQRCARTDK 119
>TIGR_CMR|CBU_0892 [details] [associations]
symbol:CBU_0892 "tRNA pseudouridine synthase A"
species:227377 "Coxiella burnetii RSA 493" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000248672 ProtClustDB:PRK00021 OMA:TPFRNVH
RefSeq:YP_338281.1 ProteinModelPortal:Q4AAX9 SMR:Q4AAX9
GeneID:1208785 KEGG:cbu:CBU_0892 PATRIC:17930485
BioCyc:CBUR227377:GJ7S-885-MONOMER Uniprot:Q4AAX9
Length = 261
Score = 111 (44.1 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 42/122 (34%), Positives = 57/122 (46%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+IA+ Y G Y G Q KT++G++E+AL AV+ +P A RTD
Sbjct: 3 RIALGIRYDGSAYHGWQVQEALKTVQGEVEKAL---SAVAN----HPVFVTCA--GRTDA 53
Query: 121 GVSAVGQVV---SGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A QV + + D V NSNLP I I K V F+A+ RRY Y
Sbjct: 54 GVHASAQVAHFDTTAYRSDH-AWVFGANSNLPHDISILWAKAVEEDFHARYSAMARRYRY 112
Query: 178 LL 179
++
Sbjct: 113 IV 114
Score = 89 (36.4 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 31/125 (24%), Positives = 56/125 (44%)
Query: 330 LLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFT-TRTKAEDPSARRYIISFGADSVVNV 388
L K G+ Y ++KR ++ +G H+F +F ++ P + + I + +
Sbjct: 124 LRKAIGWHYRPLDEKRMQAGAQYLIGEHDFSSFQGAGCQSRTPVRKIFQIE-----IYRI 178
Query: 389 EGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQ-KDVNINVPTAPEVG 447
+ + EV +F+LH +R + G+ +A+ +T L+ KD T P G
Sbjct: 179 RRMVVI--EVQANAFLLHMVRNIAGVLIAIGSGEKHPDWAQTVLKAKDRRQGGVTVPPNG 236
Query: 448 LYLDE 452
LYL E
Sbjct: 237 LYLVE 241
>WB|WBGene00006473 [details] [associations]
symbol:tag-124 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:Z47075 RefSeq:NP_496062.3
GeneID:174509 KEGG:cel:CELE_E02H1.3 CTD:174509 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
OMA:NHAVKTH GeneTree:ENSGT00510000047444 PIR:T20413
ProteinModelPortal:Q09524 SMR:Q09524 STRING:Q09524
EnsemblMetazoa:E02H1.3 UCSC:E02H1.3.1 WormBase:E02H1.3
InParanoid:Q09524 NextBio:884332 Uniprot:Q09524
Length = 402
Score = 98 (39.6 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAK-TIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
RRKIAI F Y G + G+ + P + T+E + +AL + + + + D++R R
Sbjct: 29 RRKIAIQFFYLGWEHDGLVQQPHTQNTVENHIMQALIKTHLIEDWTK-----CDFSRCGR 83
Query: 118 TDKGVSAVGQVVS 130
TDKGVSA Q +
Sbjct: 84 TDKGVSAFKQTAA 96
Score = 80 (33.2 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 141 VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
V+ LN LP IR+F + V +FNA+ C++R Y Y
Sbjct: 133 VKMLNGVLPKTIRVFAWAPVAQTFNARFDCNRRTYKY 169
Score = 66 (28.3 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 29/119 (24%), Positives = 46/119 (38%)
Query: 354 VGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNV------EGIDFLKCEVVGQSFMLHQ 407
VG H+F NF E + Y+ V V + ++ V G F+ H
Sbjct: 189 VGEHDFSNFCQIDMNEKRLLQSYVRKVYEVKVEQVSTHPENDMYSMVELTVSGSGFLWHM 248
Query: 408 IRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECIFASYNKKWK 463
IR ++ + + R SLI L + P A + L L +C + S + +WK
Sbjct: 249 IRYIVTILQEIGRENEQPSLISQLLDLKKYPSRPQYTLASDTPLCLFDCGYKSEDVEWK 307
Score = 49 (22.3 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 19/76 (25%), Positives = 32/76 (42%)
Query: 214 RGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISE 273
R R + ++G+ T S D N L+ V+ + S + ES+ES K E
Sbjct: 330 RSRMMENMLGELTGMAEFSSGDANKGLHEFVQDRPIPSNYIRFENRKMCESLESKK---E 386
Query: 274 SVMVENANSESVNETL 289
+ + N E ++ L
Sbjct: 387 KMAEKKKNGEESSDKL 402
>UNIPROTKB|E9PRI9 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
EMBL:AP000842 GO:GO:0031119 Gene3D:3.30.70.580 PANTHER:PTHR11142
HGNC:HGNC:25461 IPI:IPI00978468 ProteinModelPortal:E9PRI9
SMR:E9PRI9 Ensembl:ENST00000534158 ArrayExpress:E9PRI9 Bgee:E9PRI9
Uniprot:E9PRI9
Length = 169
Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 44/115 (38%), Positives = 57/115 (49%)
Query: 21 EPDPKRLKMSATSTSDDERDLIPAAAGADSTTKR---QLCKRRKIAIFFAYCGVGYQGM- 76
E + +RLK +D ++ +AGA T + RR +A+ AY G GYQG
Sbjct: 22 EQEVQRLKKEQAKNKEDS-NIRENSAGAGKTKRAFDFSAHGRRHVALRIAYMGWGYQGFA 80
Query: 77 -QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS 130
Q+N TIE L EAL + V R N + R RTDKGVSA GQV+S
Sbjct: 81 SQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCGRTDKGVSAFGQVIS 129
>TIGR_CMR|CHY_2276 [details] [associations]
symbol:CHY_2276 "tRNA pseudouridine synthase A"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000248673
OMA:TPFRNVH RefSeq:YP_361085.1 STRING:Q3A9U9 GeneID:3728226
KEGG:chy:CHY_2276 PATRIC:21277623
BioCyc:CHYD246194:GJCN-2275-MONOMER Uniprot:Q3A9U9
Length = 246
Score = 114 (45.2 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 42/116 (36%), Positives = 57/116 (49%)
Query: 67 AYCGVGYQGMQKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
AY G + G QK +TI+G LEE L H + E P + A RTD GV A+
Sbjct: 12 AYDGTNFAGFQKQKNTPQTIQGILEEKL-HK-ILKE-----PVKVIGA--GRTDAGVHAL 62
Query: 126 GQVV--SGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
GQVV S + + E LN+ LPT IR+ + V F+A+ ++ Y Y L
Sbjct: 63 GQVVNFSAPWKAPVDKIPEILNNTLPTAIRVLEAEIVPDDFHARYSARKKEYRYYL 118
Score = 71 (30.1 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 24/110 (21%), Positives = 48/110 (43%)
Query: 342 EKKRFNRILKHYVGSHNFHNF-TTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
++++ + L++ +G+H+F F + ++P + S+ D + F V
Sbjct: 139 DREKVAKALEYLIGTHDFSGFGAAGSSGKNPIKTMFEASYREDGFLGY--FTF-----VA 191
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
SF+ R + G V + N P+ + E + + TAP GL+L
Sbjct: 192 DSFLYKMARILTGTLVEIGLNGHPERVREILTTGNKKLAGKTAPAHGLFL 241
>TAIR|locus:2009021 [details] [associations]
symbol:AT1G34150 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K01855 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000199032 EMBL:AF360187 EMBL:AY040002
IPI:IPI00521240 RefSeq:NP_564438.1 UniGene:At.19010
ProteinModelPortal:Q9C5K6 SMR:Q9C5K6 STRING:Q9C5K6 PaxDb:Q9C5K6
PRIDE:Q9C5K6 EnsemblPlants:AT1G34150.1 GeneID:840314
KEGG:ath:AT1G34150 TAIR:At1g34150 InParanoid:Q9C5K6 OMA:KFIGEHD
PhylomeDB:Q9C5K6 ProtClustDB:CLSN2688258 ArrayExpress:Q9C5K6
Genevestigator:Q9C5K6 Uniprot:Q9C5K6
Length = 446
Score = 89 (36.4 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 29/109 (26%), Positives = 43/109 (39%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNV-EGIDFLKCEVVGQSFMLHQIR 409
K ++G H+F NF A R + F N EG + G +F+ HQIR
Sbjct: 241 KKFIGEHDFRNFCKMDVANVHCYTRRVTFFEVSPCQNSHEGDQLCTFTMRGSAFLWHQIR 300
Query: 410 KMIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECIF 455
M+ + + + +I+T L P A E+ L L C F
Sbjct: 301 CMVAVLFMIGQGVESVDVIDTLLDTKKTPRKPQYLLASEIPLVLRTCEF 349
Score = 81 (33.6 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 33/127 (25%), Positives = 57/127 (44%)
Query: 7 NTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFF 66
N + L S Q+ + K + + S+S R + G ++ L +R +A+
Sbjct: 39 NAKLLSQVSSCQCQQMEVKHDRSLSDSSSLVRRRRV--RKGDKNSIPSHLISKRYVALKI 96
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDR---GNPRRYDWARSARTDKGVS 123
Y G + G +E +E +F + ER R G+ + ++R RTDKGVS
Sbjct: 97 MYFGKRFYGFSAEA---QMEPSIESEVFKA---LERTRLLVGDKKDSCYSRCGRTDKGVS 150
Query: 124 AVGQVVS 130
+ GQV++
Sbjct: 151 STGQVIA 157
Score = 65 (27.9 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 18/50 (36%), Positives = 23/50 (46%)
Query: 129 VSGRFCIDPP-GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
V+GR P V LN LP IR+ G+ F+A+ C R Y Y
Sbjct: 175 VNGRTGERPEYDYVRVLNRALPDDIRVIGWSPAPIDFHARFSCYAREYKY 224
>UNIPROTKB|Q8N0Z8 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase-like 1"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723 EMBL:AL139287
EMBL:CH471183 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 EMBL:AK075292 EMBL:AK298218
EMBL:BC034304 IPI:IPI00166125 IPI:IPI00915388 RefSeq:NP_699170.1
UniGene:Hs.400659 ProteinModelPortal:Q8N0Z8 SMR:Q8N0Z8
STRING:Q8N0Z8 PhosphoSite:Q8N0Z8 DMDM:52783232 PRIDE:Q8N0Z8
DNASU:126789 Ensembl:ENST00000379031 GeneID:126789 KEGG:hsa:126789
UCSC:uc001aed.3 UCSC:uc010nyi.2 CTD:126789 GeneCards:GC01P001233
HGNC:HGNC:26914 HPA:HPA032057 neXtProt:NX_Q8N0Z8
PharmGKB:PA134947837 HOGENOM:HOG000248674 HOVERGEN:HBG053770
InParanoid:Q8N0Z8 OMA:WALPADC OrthoDB:EOG4P5K9S PhylomeDB:Q8N0Z8
ChiTaRS:PUSL1 GenomeRNAi:126789 NextBio:81916 Bgee:Q8N0Z8
CleanEx:HS_PUSL1 Genevestigator:Q8N0Z8 GermOnline:ENSG00000169972
Uniprot:Q8N0Z8
Length = 303
Score = 98 (39.6 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 39/132 (29%), Positives = 58/132 (43%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKT---IEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
R + ++F Y G + G+ G + ++ LEEA +V P R+ S
Sbjct: 11 RARYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVE------PVRF--TIS 62
Query: 116 ARTDKGVSAVGQVV-------SGRFCIDPPGLVERLNSNLP-TQIRIFGYKRVTASFNAK 167
+RTD GV A+ SGR P L E LN++L IR+ RV + F+A+
Sbjct: 63 SRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLAEALNTHLRHPAIRVLRAFRVPSDFHAR 122
Query: 168 KFCDQRRYVYLL 179
R Y+Y L
Sbjct: 123 HAATSRTYLYRL 134
Score = 89 (36.4 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 351 KHYVGSHNFHNFTTR-TKAEDP--SARRYIISFG-ADSVVNVEG---IDFLKCEVVGQSF 403
+H +G+H+F F + + P + RR +S G A +V E + F E QSF
Sbjct: 170 QHLLGTHDFSAFQSAGSPVPSPVRTLRRVSVSPGQASPLVTPEESRKLRFWNLEFESQSF 229
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNIN---VPTAPEVGLYLDECIFAS 457
+ Q+R+M + VAV + ++T L+ + AP GL+L ++ +
Sbjct: 230 LYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVLYGN 286
>TIGR_CMR|NSE_0020 [details] [associations]
symbol:NSE_0020 "tRNA pseudouridine synthase A"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 OMA:RHYRYRI
RefSeq:YP_505923.1 ProteinModelPortal:Q2GF33 STRING:Q2GF33
GeneID:3932291 KEGG:nse:NSE_0020 PATRIC:22680151
ProtClustDB:CLSK2528006 BioCyc:NSEN222891:GHFU-58-MONOMER
Uniprot:Q2GF33
Length = 243
Score = 95 (38.5 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
++ VG H+F +F + +K +A R + + N E + F +SF+ HQ+R
Sbjct: 146 QYLVGKHDFQSFRS-SKCGASNAIRTLDRLEVEK--NGEEMIF---HASAKSFLHHQVRI 199
Query: 411 MIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
M+G VA+ S+ E +K+ PTAP GLYL
Sbjct: 200 MVGTLVAIASGKL-MSVTEILSKKNRRYAGPTAPPCGLYL 238
Score = 88 (36.0 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 33/114 (28%), Positives = 54/114 (47%)
Query: 68 YCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQ 127
Y G G+ G QK A +++ +LE L S + E+ N + RTD GV A+GQ
Sbjct: 9 YVGTGFSGWQKQMSAPSVQEELESVL--SFLLKEKIAVNV-------AGRTDAGVHALGQ 59
Query: 128 VV---SGRFCIDPPGLVERLNSNLPTQ-IRIFGYKRVTASFNAKKFCDQRRYVY 177
V + + P +V +N +L + I + + V +F+A+ +R Y Y
Sbjct: 60 VFHFDARESTLQPFQIVNAVNYHLKEKLIVLLKIEIVDETFDARFSAIRRHYQY 113
>CGD|CAL0000624 [details] [associations]
symbol:orf19.6297 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 CGD:CAL0000624 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:AACQ01000212
EMBL:AACQ01000211 RefSeq:XP_711136.1 RefSeq:XP_711154.1
ProteinModelPortal:Q59N30 STRING:Q59N30 GeneID:3647251
GeneID:3647265 KEGG:cal:CaO19.13676 KEGG:cal:CaO19.6297
Uniprot:Q59N30
Length = 489
Score = 97 (39.2 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 44/145 (30%), Positives = 63/145 (43%)
Query: 60 RKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNP-RRYDWARS 115
R +A FAY G Y G+ Q P T+E +AL + E P ++R
Sbjct: 130 RFVAFKFAYLGWNYNGLALQLEPTPLPTVEEVFLKALAKVKLIKE-----PIEEVKFSRC 184
Query: 116 ARTDKGVSAVGQVVS----GRFCID----PP------GLVERLNSNLPTQIRIFGY-KRV 160
RTDKGVSA+ QV+S ++ P + LN+NLP+ I++ R
Sbjct: 185 GRTDKGVSAMNQVISINVRSNITLENQSNPEFDDLEIDYISVLNANLPSDIKVHSICLRP 244
Query: 161 TASFNAKKFCDQRRYVYLLPVFALD 185
F+A+ C R Y Y+ LD
Sbjct: 245 PPDFDARFSCLSRHYRYIFRKQDLD 269
Score = 95 (38.5 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 32/128 (25%), Positives = 61/128 (47%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLH 406
N+ K Y G H+F NF ++ + ++ ++++ D+ ++ G +F+ H
Sbjct: 274 NQGAKLYQGIHDFRNFCKLDGSKQIT--NFVREIYQSQIIHLHQ-DYYCFDLKGSAFLWH 330
Query: 407 QIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPE------VGLYLDECIFASYNK 460
Q+R M+ + + ++ S+I T L D N PT P+ + L L +C F S
Sbjct: 331 QVRCMVAILFTIGQSLESPSII-TDLM-DTN-KFPTKPQYEMAHDIPLVLYDCEFPSM-- 385
Query: 461 KWKDSHEE 468
+WK + +E
Sbjct: 386 EWKSTDDE 393
>SGD|S000001895 [details] [associations]
symbol:DEG1 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IDA;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0016853 "isomerase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 SGD:S000001895 GO:GO:0005634 GO:GO:0005737 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 BRENDA:5.4.99.12 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
GeneTree:ENSGT00510000047444 EMBL:AY693197 PIR:S14145
RefSeq:NP_116655.1 ProteinModelPortal:P31115 SMR:P31115
DIP:DIP-5151N IntAct:P31115 MINT:MINT-531752 STRING:P31115
PaxDb:P31115 PeptideAtlas:P31115 PRIDE:P31115 EnsemblFungi:YFL001W
GeneID:850550 KEGG:sce:YFL001W CYGD:YFL001w OMA:KFSRCGR
OrthoDB:EOG46T69C NextBio:966327 Genevestigator:P31115
GermOnline:YFL001W Uniprot:P31115
Length = 442
Score = 112 (44.5 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 48/137 (35%), Positives = 63/137 (45%)
Query: 60 RKIAIFFAYCGVGYQGM--QKN-PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
R IA+ FAY G Y G+ QK T+EG + EA+ V + Y ++R
Sbjct: 92 RFIALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQD---YKFSRCG 148
Query: 117 RTDKGVSAVGQVVS--GRFCI------DPPG------LVERLNSNLPTQIRIFGY-KRVT 161
RTDKGVSA+ QV+S R + DP V LN LP IRI R
Sbjct: 149 RTDKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPP 208
Query: 162 ASFNAKKFCDQRRYVYL 178
+F+A+ C R Y Y+
Sbjct: 209 PNFDARFSCVHRHYKYI 225
Score = 76 (31.8 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 29/125 (23%), Positives = 61/125 (48%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAED-PSARRYIISFGADSVVNVEGIDFLKCEVVGQS 402
++ ++ ++VG +F NF ++ + +R IIS S + F ++VG +
Sbjct: 234 EKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIIS----SKILPLSETFYCFDLVGSA 289
Query: 403 FMLHQIRKMIGLAVAVVRNC-APQSLIE-TALQKDVNINV-PTAPEVGLYLDECIFASYN 459
F+ HQ+R M+ + V ++ P+ ++ T ++K V A ++ L L +C F +
Sbjct: 290 FLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFPEMD 349
Query: 460 KKWKD 464
W++
Sbjct: 350 --WQE 352
>UNIPROTKB|G4MKS9 [details] [associations]
symbol:MGG_16154 "tRNA-pseudouridine synthase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
EMBL:CM001231 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
RefSeq:XP_003709381.1 ProteinModelPortal:G4MKS9
EnsemblFungi:MGG_16154T0 GeneID:12984466 KEGG:mgr:MGG_16154
Uniprot:G4MKS9
Length = 694
Score = 106 (42.4 bits), Expect = 9.8e-07, Sum P(3) = 9.8e-07
Identities = 43/147 (29%), Positives = 64/147 (43%)
Query: 1 MENAETNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCK-- 58
++ NT P + SP P + S++ S P R +
Sbjct: 106 IQQPRPNTPPHPKKA-SPSPSSPPPPVGSSSSKPSGVAAATPPPKKKKQKGVPRNASEFS 164
Query: 59 RRKIAIFFAYCGVGYQGMQKNP-GA-KTIEGDLEEALFHSGAV---SERDRGNP--RRYD 111
R IA+ AY G Y G++ P GA IE +L +AL + + ERD + D
Sbjct: 165 TRYIALKLAYLGKNYNGLEYQPSGALPAIEEELWKALVKTCLIFPDPERDPSEVDFKVCD 224
Query: 112 WARSARTDKGVSAVGQVVSGRFCIDPP 138
+++ RTD+GVSA GQVV+ R + P
Sbjct: 225 YSKCGRTDRGVSAFGQVVALRVKSNKP 251
Score = 66 (28.3 bits), Expect = 9.8e-07, Sum P(3) = 9.8e-07
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDV---NINVPTAPEVGLYLDECI 454
V G +F+ HQIR MI + V + S++ L + N P A + L L +C+
Sbjct: 463 VRGSAFLWHQIRHMIAVLFLVGQRLEKPSIVSELLDIEKYPGKPNYPMASDAPLVLWDCL 522
Query: 455 FASYNKKWKDSHEE 468
+ +H E
Sbjct: 523 YGGRTLPDGSTHGE 536
Score = 62 (26.9 bits), Expect = 9.8e-07, Sum P(3) = 9.8e-07
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 144 LNSNLPTQIRIFGY-KRVTASFNAKKFCDQRRYVYLL--PVFA 183
LN+ LP IR+ + F+A+ C +R+Y Y P+F+
Sbjct: 319 LNAVLPVDIRVLAWCPNPPPGFSARHSCHERQYRYFFTQPIFS 361
>UNIPROTKB|F1RJE9 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9823
"Sus scrofa" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142 OMA:WALPADC
GeneTree:ENSGT00510000048520 EMBL:FP102596
Ensembl:ENSSSCT00000003707 Uniprot:F1RJE9
Length = 302
Score = 92 (37.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 35/123 (28%), Positives = 58/123 (47%)
Query: 351 KHYVGSHNFHNF-TTRTKAEDP--SARRYIISFGADS--VVNVE--GIDFLKCEVVGQSF 403
+H +G+H+F F +T + A P + RR +S S V+ E G+ F E QSF
Sbjct: 170 QHLLGTHDFSAFQSTGSPATSPVRTLRRASVSPEPSSPLVLPGESRGLRFWSLEFESQSF 229
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQ-KDV--NINVPTAPEVGLYLDECIFASYNK 460
+ Q+R+M + VAV + ++ L+ +D AP GL+L ++ K
Sbjct: 230 LYRQVRRMTAVLVAVGLGALTPAQVKMILESRDPLGRHQSRVAPAHGLFLKSVLYGDLGK 289
Query: 461 K-W 462
+ W
Sbjct: 290 RRW 292
Score = 88 (36.0 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 38/132 (28%), Positives = 58/132 (43%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPG---AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
R + ++F Y G + G+ G A ++ LEEA +V P ++ S
Sbjct: 11 RARYLVYFQYLGTDFNGVAAVRGPQHAVGVQNYLEEAAERLNSVV------PVKF--TIS 62
Query: 116 ARTDKGVSAVGQVV-------SGRFCIDPPGLVERLNSNLP-TQIRIFGYKRVTASFNAK 167
+RTD GV A+ SG+ P L E LN++L IR+ RV + F+A+
Sbjct: 63 SRTDAGVHALSNAAHLDIQRRSGQPPFSPEVLTEALNTHLRHPAIRVLQAFRVPSHFHAR 122
Query: 168 KFCDQRRYVYLL 179
R Y+Y L
Sbjct: 123 YAATSRTYLYRL 134
>UNIPROTKB|P07649 [details] [associations]
symbol:truA "tRNA pseudouridine synthase I" species:83333
"Escherichia coli K-12" [GO:0000049 "tRNA binding" evidence=IDA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IMP]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:M68934
GO:GO:0000049 GO:GO:0009982 SUPFAM:SSF55120 EMBL:M15543 EMBL:X02743
GO:GO:0031119 BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 ProtClustDB:PRK00021
EMBL:M15542 PIR:B23792 RefSeq:NP_416821.1 RefSeq:YP_490560.1
PDB:1DJ0 PDB:2NQP PDB:2NR0 PDB:2NRE PDBsum:1DJ0 PDBsum:2NQP
PDBsum:2NR0 PDBsum:2NRE ProteinModelPortal:P07649 SMR:P07649
DIP:DIP-11043N IntAct:P07649 MINT:MINT-1310146 PRIDE:P07649
EnsemblBacteria:EBESCT00000002191 EnsemblBacteria:EBESCT00000002192
EnsemblBacteria:EBESCT00000017099 GeneID:12932365 GeneID:946793
KEGG:ecj:Y75_p2284 KEGG:eco:b2318 PATRIC:32120007 EchoBASE:EB0449
EcoGene:EG10454 OMA:TPFRNVH BioCyc:EcoCyc:EG10454-MONOMER
BioCyc:ECOL316407:JW2315-MONOMER BioCyc:MetaCyc:EG10454-MONOMER
EvolutionaryTrace:P07649 Genevestigator:P07649 Uniprot:P07649
Length = 270
Score = 97 (39.2 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 39/121 (32%), Positives = 53/121 (43%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
KIA+ Y G Y G Q+ ++++ LE+AL S +E P A RTD
Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKAL--SQVANE-----PITVFCA--GRTDA 61
Query: 121 GVSAVGQVVSGRFCIDPPGLVERL--NSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV GQVV L N+NLP I + K V F+A+ RRY Y+
Sbjct: 62 GVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYI 121
Query: 179 L 179
+
Sbjct: 122 I 122
Score = 80 (33.2 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 29/122 (23%), Positives = 55/122 (45%)
Query: 330 LLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVE 389
L KG Y + +R +R + +G ++F +F + + + R ++ V
Sbjct: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRA-VQCQSRTPWRNVMHIN----VTRH 186
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLI-ETALQKDVNINVPTAPEVGL 448
G ++ ++ +F+ H +R ++G + V + P+S I E KD + TA GL
Sbjct: 187 G-PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 449 YL 450
YL
Sbjct: 246 YL 247
>ASPGD|ASPL0000040109 [details] [associations]
symbol:AN3170 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=RCA] [GO:0004730 "pseudouridylate synthase activity"
evidence=RCA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:BN001306
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 HOGENOM:HOG000199032
EnsemblFungi:CADANIAT00009900 OMA:LWDCIFP Uniprot:C8VIE4
Length = 664
Score = 72 (30.4 bits), Expect = 9.5e-06, Sum P(5) = 9.5e-06
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 60 RKIAIFFAYCGVGYQGMQ---KNPGA-KTIEGDLEEALFHSGAVSERDRGN 106
R IA+ FAY G YQG++ NP A TIE ++ +AL + + D G+
Sbjct: 165 RFIALKFAYLGQRYQGLEHANNNPTALPTIEEEMWKALMRTRLIFPTDMGD 215
Score = 69 (29.3 bits), Expect = 9.5e-06, Sum P(5) = 9.5e-06
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECIFA 456
G +F+ HQ+R M+G+ V + S++ L N P A + L L C+F
Sbjct: 464 GSAFLWHQVRHMVGILFLVGQGLESPSVVRELLDVTKNPRKPMYEMASDAPLVLWNCVFP 523
Query: 457 SYNKKWKD 464
+ + + ++
Sbjct: 524 AKDSETRE 531
Score = 61 (26.5 bits), Expect = 9.5e-06, Sum P(5) = 9.5e-06
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 111 DWARSARTDKGVSAVGQVV 129
+++++ RTD+GVSA GQV+
Sbjct: 239 EYSKAGRTDRGVSAFGQVI 257
Score = 57 (25.1 bits), Expect = 9.5e-06, Sum P(5) = 9.5e-06
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 141 VERLNSNLPTQIRIFGY-KRVTASFNAKKFCDQRRYVYLL--PVFA 183
+ LN LP IR+ + F+A+ C +R Y Y P F+
Sbjct: 303 ISLLNKALPEDIRVLAWCPNPPEDFDARYSCRERHYKYFFTQPAFS 348
Score = 39 (18.8 bits), Expect = 9.5e-06, Sum P(5) = 9.5e-06
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 351 KHYVGSHNFHNF 362
K++ G H+F NF
Sbjct: 382 KYFEGVHDFRNF 393
>UNIPROTKB|Q9KTA4 [details] [associations]
symbol:truA "tRNA pseudouridine synthase A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006400 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 PIR:A82253
RefSeq:NP_230645.1 ProteinModelPortal:Q9KTA4 SMR:Q9KTA4
DNASU:2614252 GeneID:2614252 KEGG:vch:VC0999 PATRIC:20081098
OMA:GKSFLWE Uniprot:Q9KTA4
Length = 264
Score = 95 (38.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 35/121 (28%), Positives = 53/121 (43%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+IA+ Y G Y G Q+ K+++ LE+AL + +P A RTD
Sbjct: 2 RIALGIEYDGTHYYGWQRQREVKSVQEALEKAL-------SKIANHPVEVQCA--GRTDA 52
Query: 121 GVSAVGQVVSGRFCIDPPGLVERL--NSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV GQVV + + + N+NLP I + V F+A+ RRY Y+
Sbjct: 53 GVHGTGQVVHFDTTAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARRYRYV 112
Query: 179 L 179
+
Sbjct: 113 I 113
Score = 77 (32.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 29/122 (23%), Positives = 54/122 (44%)
Query: 330 LLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVE 389
L G +GE + ++ + ++ +G ++F +F + S R ++ V
Sbjct: 123 LNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRA-VHCQSRSPWRNVMHLN----VTRH 177
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETAL-QKDVNINVPTAPEVGL 448
G ++ ++ +F+ H +R + G +AV R I+ L QKD + TA GL
Sbjct: 178 G-RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGL 236
Query: 449 YL 450
YL
Sbjct: 237 YL 238
>TIGR_CMR|VC_0999 [details] [associations]
symbol:VC_0999 "tRNA pseudouridine synthase A" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0009982 "pseudouridine synthase activity"
evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006400 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 PIR:A82253
RefSeq:NP_230645.1 ProteinModelPortal:Q9KTA4 SMR:Q9KTA4
DNASU:2614252 GeneID:2614252 KEGG:vch:VC0999 PATRIC:20081098
OMA:GKSFLWE Uniprot:Q9KTA4
Length = 264
Score = 95 (38.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 35/121 (28%), Positives = 53/121 (43%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+IA+ Y G Y G Q+ K+++ LE+AL + +P A RTD
Sbjct: 2 RIALGIEYDGTHYYGWQRQREVKSVQEALEKAL-------SKIANHPVEVQCA--GRTDA 52
Query: 121 GVSAVGQVVSGRFCIDPPGLVERL--NSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV GQVV + + + N+NLP I + V F+A+ RRY Y+
Sbjct: 53 GVHGTGQVVHFDTTAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARRYRYV 112
Query: 179 L 179
+
Sbjct: 113 I 113
Score = 77 (32.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 29/122 (23%), Positives = 54/122 (44%)
Query: 330 LLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVE 389
L G +GE + ++ + ++ +G ++F +F + S R ++ V
Sbjct: 123 LNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRA-VHCQSRSPWRNVMHLN----VTRH 177
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETAL-QKDVNINVPTAPEVGL 448
G ++ ++ +F+ H +R + G +AV R I+ L QKD + TA GL
Sbjct: 178 G-RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGL 236
Query: 449 YL 450
YL
Sbjct: 237 YL 238
>TIGR_CMR|SPO_3143 [details] [associations]
symbol:SPO_3143 "tRNA pseudouridine synthase A"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 OMA:RHYRYRI
ProtClustDB:PRK00021 RefSeq:YP_168346.1 ProteinModelPortal:Q5LNR0
GeneID:3193303 KEGG:sil:SPO3143 PATRIC:23379731 Uniprot:Q5LNR0
Length = 262
Score = 98 (39.6 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 35/122 (28%), Positives = 55/122 (45%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+ A+ Y G + G Q+ +++G +E AL R P + A + RTD
Sbjct: 3 RYALKVEYLGTPFAGWQRQKDLPSVQGAIETALA---------RLEPGPHTIAAAGRTDA 53
Query: 121 GVSAVGQVVSGRFCID--PPGLVERLNSNL-PTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV +GQV D P L E LN +L P + I RV ++A+ +R+Y++
Sbjct: 54 GVHGLGQVAHCDLTRDWDPFRLSEALNYHLKPQPVAITAAARVAEDWHARFSATERQYLF 113
Query: 178 LL 179
L
Sbjct: 114 RL 115
Score = 70 (29.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 25/99 (25%), Positives = 47/99 (47%)
Query: 354 VGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIG 413
+G H+F F + + S + + ++V + G + ++ V +SF+ +Q+R +G
Sbjct: 149 LGRHDFTTFRSSI-CQAASPVKTLDELRVEAVESFSGPE-IRFHVRARSFLHNQVRSFVG 206
Query: 414 LAVAVVRNC-APQSLIETALQ-KDVNINVPTAPEVGLYL 450
V AP+ + +AL+ +D P P GLYL
Sbjct: 207 TLERVGAGAWAPED-VRSALEARDRAACGPVCPPQGLYL 244
>MGI|MGI:3047787 [details] [associations]
symbol:Pusl1 "pseudouridylate synthase-like 1" species:10090
"Mus musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 MGI:MGI:3047787 GO:GO:0003723 GO:GO:0008033
EMBL:AL670236 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
UniGene:Mm.259270 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 CTD:126789
HOGENOM:HOG000248674 HOVERGEN:HBG053770 OMA:WALPADC
OrthoDB:EOG4P5K9S EMBL:AK151452 EMBL:AK160236 IPI:IPI00458175
IPI:IPI00626517 IPI:IPI00875388 RefSeq:NP_001028662.1
ProteinModelPortal:A2ADA5 SMR:A2ADA5 STRING:A2ADA5
PhosphoSite:A2ADA5 PaxDb:A2ADA5 PRIDE:A2ADA5
Ensembl:ENSMUST00000097737 GeneID:433813 KEGG:mmu:433813
UCSC:uc008wfi.1 UCSC:uc012drb.1 GeneTree:ENSGT00510000048520
InParanoid:A2ADA5 NextBio:409016 Bgee:A2ADA5 Genevestigator:A2ADA5
Uniprot:A2ADA5
Length = 291
Score = 84 (34.6 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 37/132 (28%), Positives = 56/132 (42%)
Query: 59 RRKIAIFFAYCGVGYQGM---QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
R + +F Y G + G+ + NP A + LEEA +V +P R+ S
Sbjct: 11 RARYLVFLQYLGTDFNGVAAVRGNPRAVGVLNFLEEAAKRLNSV------DPVRF--TIS 62
Query: 116 ARTDKGVSAVGQVVS-------GRFCIDPPGLVERLNSNLP-TQIRIFGYKRVTASFNAK 167
+RTD GV A+ G+ P + + LN++L IR+ RV F+A+
Sbjct: 63 SRTDAGVHALSNAAHLDIQRRPGQSPFSPEVVAKALNTHLKHPAIRVLKAFRVPNDFHAR 122
Query: 168 KFCDQRRYVYLL 179
R Y Y L
Sbjct: 123 HAATSRTYQYRL 134
Score = 82 (33.9 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 30/118 (25%), Positives = 52/118 (44%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPSAR---RYIISFG-ADSVVNVEG---IDFLKCEVVGQSF 403
+H +G+H+F F + + R R +S G A V EG + F E QSF
Sbjct: 170 QHLLGTHDFSAFQSAGSPVTNTVRTLRRVSVSPGPASPFVLPEGSRRLQFWTLEFESQSF 229
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNIN---VPTAPEVGLYLDECIFASY 458
+ Q+R+M + VAV + ++ L+ + AP GL+L ++ ++
Sbjct: 230 LYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPARGLFLKSVLYDNF 287
>TAIR|locus:2077552 [details] [associations]
symbol:AT3G06950 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248673 OMA:GKSFLWE EMBL:BT029513
IPI:IPI00532571 RefSeq:NP_187351.2 UniGene:At.18751
UniGene:At.40432 ProteinModelPortal:A1A6J3 SMR:A1A6J3 STRING:A1A6J3
EnsemblPlants:AT3G06950.1 GeneID:819880 KEGG:ath:AT3G06950
TAIR:At3g06950 InParanoid:A1A6J3 PhylomeDB:A1A6J3
ProtClustDB:CLSN2690754 Genevestigator:A1A6J3 Uniprot:A1A6J3
Length = 323
Score = 87 (35.7 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 30/121 (24%), Positives = 56/121 (46%)
Query: 353 YVGSHNFHNFTTRTKAED-PSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKM 411
+VG H+F F T+ + P + I F V+ + + L+ EV G F+ Q+R M
Sbjct: 190 FVGKHDFSAFANATREDGVPDPLKTISRF---DVIQMGSL--LQLEVEGSGFLYRQVRNM 244
Query: 412 IGLAVAVVRNCAPQSLIETALQ-KDVNI-----NVPTAPEVGLYLDECIFASYNKKWKDS 465
+ L + + + ++ L+ KD + ++P +P GL C+ + K+K+
Sbjct: 245 VALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLPASPH-GL----CLVSV---KYKED 296
Query: 466 H 466
H
Sbjct: 297 H 297
Score = 80 (33.2 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 34/120 (28%), Positives = 47/120 (39%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
K + AY G + G Q TI+ LE+AL ++E R + + RTD
Sbjct: 42 KWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQ---ITELGR---KELQLIGAGRTDA 95
Query: 121 GVSAVGQVVSGRFCIDPPGLVE---RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A GQV + L LN LP IR+ F+A+ + Y Y
Sbjct: 96 GVHAWGQVAHFVTPFNYTSLDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASSKVYRY 155
>TIGR_CMR|GSU_2877 [details] [associations]
symbol:GSU_2877 "tRNA pseudouridine synthase A"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 HOGENOM:HOG000248673
OMA:TPFRNVH RefSeq:NP_953919.1 ProteinModelPortal:P60350
GeneID:2688667 KEGG:gsu:GSU2877 PATRIC:22028615
BioCyc:GSUL243231:GH27-2866-MONOMER Uniprot:P60350
Length = 244
Score = 87 (35.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 31/107 (28%), Positives = 50/107 (46%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVGQSFMLHQIR 409
+H G +F +F T A + RR D+V ++ +G + L +V G F+ + +R
Sbjct: 145 RHLTGERDFASFRTAGCAARTTIRR------VDAVEISDDG-EMLTVDVHGSGFLRNMVR 197
Query: 410 KMIGLAVAVVRN-CAPQSLIETALQKDVNINVPTAPEVGLYLDECIF 455
M+G V V R P+ + + + V PTAP GL L + F
Sbjct: 198 IMVGTLVEVGRGKLTPEHVAQMVVCPGVVPAGPTAPPQGLCLQKVRF 244
Score = 75 (31.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 34/122 (27%), Positives = 47/122 (38%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R I + Y G Y G Q P +I+ +E AL + + E P R S RTD
Sbjct: 2 RTIKLILEYDGTNYAGWQLQPNGLSIQEVVEGAL--ARLLKE-----PVRL--RASGRTD 52
Query: 120 KGVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A G V + P + LN+ LP I + FN + + Y Y
Sbjct: 53 AGVHARGMVAAFDTDRSIPLRAFSDGLNALLPPDIAVRSADEALPGFNPRFAATGKHYRY 112
Query: 178 LL 179
+
Sbjct: 113 TI 114
>TIGR_CMR|DET_0504 [details] [associations]
symbol:DET_0504 "tRNA pseudouridine synthase A"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0016829 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248673 OMA:YSINANR
RefSeq:YP_181248.1 ProteinModelPortal:Q3Z951 STRING:Q3Z951
GeneID:3230211 KEGG:det:DET0504 PATRIC:21608077
ProtClustDB:CLSK837466 BioCyc:DETH243164:GJNF-504-MONOMER
Uniprot:Q3Z951
Length = 248
Score = 90 (36.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 36/112 (32%), Positives = 47/112 (41%)
Query: 68 YCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQ 127
Y G Y G Q TI+G+LE A+ SE+ R + S RTD GV A Q
Sbjct: 7 YEGTRYSGFQVQDKGATIQGELETAI--RKLTSEQTRVSG-------SGRTDAGVHAAYQ 57
Query: 128 VVS--GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
VVS + + LN LP I + V SF+ ++ R Y Y
Sbjct: 58 VVSYLSESSLGLDKIKGGLNFYLPPDIAVKEVHFVAESFDVRRRAISREYSY 109
Score = 70 (29.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 20/60 (33%), Positives = 26/60 (43%)
Query: 392 DFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQ-KDVNINVPTAPEVGLYL 450
D L + SF+ HQ+R IG V + R S E + K + P AP GL L
Sbjct: 178 DRLIFNIEANSFLTHQVRNTIGTLVELGRGTMSMSEFEALFEAKTPGLAGPAAPACGLSL 237
>UNIPROTKB|E1BUI0 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 CTD:126789 OMA:WALPADC
GeneTree:ENSGT00510000048520 EMBL:AADN02040857 EMBL:AADN02040858
IPI:IPI00574950 RefSeq:XP_417580.2 UniGene:Gga.10892
Ensembl:ENSGALT00000002630 GeneID:419419 KEGG:gga:419419
NextBio:20822478 Uniprot:E1BUI0
Length = 291
Score = 82 (33.9 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 37/132 (28%), Positives = 59/132 (44%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKT---IEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+ + +FF Y G Y G+ + ++ ++ LE+A + V P ++ S
Sbjct: 5 KTRYLVFFQYWGTKYSGVMQTSAEQSGIGVQNYLEKAAQNLKPVV------PIKFHI--S 56
Query: 116 ARTDKGVSAVG-------QVVSGRFCIDPPGLVERLNSNL-PTQIRIFGYKRVTASFNAK 167
+RTD GV A+ Q G+ L+ LN +L P IRI RVT +F+A+
Sbjct: 57 SRTDSGVHALCNSAHLDIQRAPGKPAFQERVLIGCLNHHLKPEPIRILSAYRVTNNFHAR 116
Query: 168 KFCDQRRYVYLL 179
R Y+Y L
Sbjct: 117 FSALSRTYIYRL 128
Score = 78 (32.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRN-CAPQSLIETALQKDVNINVPT---APE 445
G+ F + + +SF+ Q+R+M+G VAV + AP + E KD P AP
Sbjct: 211 GLQFWELKFKSRSFLYRQVRRMVGALVAVGQGKLAPHHIKELLEMKDARA-FPAFAMAPS 269
Query: 446 VGLYL 450
GL+L
Sbjct: 270 SGLFL 274
>UNIPROTKB|A6QP68 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9913
"Bos taurus" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 HOGENOM:HOG000248674 HOVERGEN:HBG053770
OMA:WALPADC OrthoDB:EOG4P5K9S GeneTree:ENSGT00510000048520
EMBL:DAAA02043243 EMBL:BC149176 IPI:IPI00698369 UniGene:Bt.62155
STRING:A6QP68 Ensembl:ENSBTAT00000044945 InParanoid:A6QP68
Uniprot:A6QP68
Length = 312
Score = 80 (33.2 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 32/121 (26%), Positives = 55/121 (45%)
Query: 351 KHYVGSHNFHNFTTR-TKAEDP--SARRYIISFGADS--VVNVEG--IDFLKCEVVGQSF 403
+H +G+H+F F + + A P + RR +S S V+ E + F E QSF
Sbjct: 191 QHLLGTHDFSAFQSAGSPASSPVRTLRRASVSPDPASPFVLPEESRQLQFWSMEFESQSF 250
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQ-KDV--NINVPTAPEVGLYLDECIFASYNK 460
+ Q+R+M + VAV + ++ L+ +D AP GL+L ++ K
Sbjct: 251 LYKQVRRMTAVLVAVGLGALMPAQVKAILESRDPLGKHQSRVAPAHGLFLKSVLYEGLGK 310
Query: 461 K 461
+
Sbjct: 311 R 311
Score = 79 (32.9 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 42/146 (28%), Positives = 63/146 (43%)
Query: 45 AAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKT---IEGDLEEALFHSGAVSE 101
A GA S R L ++F Y G + G+ G + ++ LEEA +V
Sbjct: 25 AMGAGSVPARYL-------VYFQYLGTDFNGVAAVRGVQRAVGVQNYLEEAAERLNSVM- 76
Query: 102 RDRGNPRRYDWARSARTDKGVSAVGQV----VSGRFCIDP--PG-LVERLNSNLP-TQIR 153
P ++ S+RTD GV A+ + R + P P L E LN++L IR
Sbjct: 77 -----PVKF--TISSRTDAGVHALSNAAHLDIQRRSDLPPFSPEVLTEALNTHLKHPAIR 129
Query: 154 IFGYKRVTASFNAKKFCDQRRYVYLL 179
+ RV + F+A+ R Y+Y L
Sbjct: 130 VLQAFRVPSHFHARHAAISRTYLYRL 155
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.371 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 468 455 0.00094 118 3 11 23 0.44 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 66
No. of states in DFA: 609 (65 KB)
Total size of DFA: 265 KB (2141 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.22u 0.17s 41.39t Elapsed: 00:00:02
Total cpu time: 41.24u 0.17s 41.41t Elapsed: 00:00:02
Start: Sat May 11 03:18:52 2013 End: Sat May 11 03:18:54 2013