BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045140
(468 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255539108|ref|XP_002510619.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223551320|gb|EEF52806.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 584
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 319/487 (65%), Positives = 375/487 (77%), Gaps = 27/487 (5%)
Query: 1 MENAETNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRR 60
MEN++ K+ SP P++EP+ KR +MS T+TSD+E A +T K+Q KRR
Sbjct: 1 MENSDL---KITSPP--PQEEPERKRPRMS-TTTSDEEEIATTAPGDEAATVKKQRYKRR 54
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
K+AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAV E+DRG P+RYDWARSARTDK
Sbjct: 55 KMAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVPEQDRGCPKRYDWARSARTDK 114
Query: 121 GVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
GVSAVGQV+SGRF +DPPGLV+RLNS LP+QIRIFGYKRVTASFNAKKFCD+RRYVYL+P
Sbjct: 115 GVSAVGQVISGRFYVDPPGLVDRLNSILPSQIRIFGYKRVTASFNAKKFCDRRRYVYLIP 174
Query: 181 VFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRT-------YQLGLPS 233
VFALD SSHRDRESV+ASLGSG+ELVKCLECSERGRKVIG +GKR+ +Q +
Sbjct: 175 VFALDPSSHRDRESVLASLGSGDELVKCLECSERGRKVIGAVGKRSFESKSEAFQTDILL 234
Query: 234 NDENASLNSQVKVDTVVSTCNGDRHNTNLESVE-SNKTISESVMVENA--------NSES 284
N A N ++K D +S N + E VE +N + +E E+A NSE
Sbjct: 235 NGGCAIANCEIKEDISMSMDNAHGVRMHSEFVEQTNVSHNEDSETESAMPRTDILSNSED 294
Query: 285 VNETLVESRTSETVQNENTDLSLDLDSKN---DSKVMAEERSVNGEEKLLKGSGFCYGEE 341
N +S+ E + +E+ + +S+ DSK E VNGEE ++KGS FCYGEE
Sbjct: 295 GN-VKSDSKQEEVMVSEDAADGGNKESETMEKDSKASVGEERVNGEEHVMKGSEFCYGEE 353
Query: 342 EKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQ 401
EK++FNRILK+YVGSHNFHNFTTRTKAEDPSA+RYIISF A + V VEGI+F+KCEV+GQ
Sbjct: 354 EKEKFNRILKYYVGSHNFHNFTTRTKAEDPSAQRYIISFDARTTVTVEGIEFVKCEVIGQ 413
Query: 402 SFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
SFMLHQIRKMIGLAVA++RNCAP+SLI TALQKDV INVPTAPEVGLYLDEC F SYN+K
Sbjct: 414 SFMLHQIRKMIGLAVAIMRNCAPESLISTALQKDVKINVPTAPEVGLYLDECFFTSYNQK 473
Query: 462 WKDSHEE 468
WKD HEE
Sbjct: 474 WKD-HEE 479
>gi|359492954|ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Vitis
vinifera]
Length = 503
Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust.
Identities = 301/463 (65%), Positives = 358/463 (77%), Gaps = 45/463 (9%)
Query: 20 QEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKN 79
QEPDPKR KMS T+T+ D+ D A TK+ KRRKIAIFFAYCGVGYQGMQKN
Sbjct: 4 QEPDPKRPKMSQTTTTSDDEDCDTTTA-----TKKPRYKRRKIAIFFAYCGVGYQGMQKN 58
Query: 80 PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG 139
PGAKTIEGDLEEALF SGAV E+DRG+P+R+DWARSARTDKGVSAVGQVVSGRF IDPPG
Sbjct: 59 PGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRFYIDPPG 118
Query: 140 LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASL 199
LVERLNSNLP QIRIFG+KRVTASFNAKKFCD+RRYVYL+PVFALD SSH DRESV+AS+
Sbjct: 119 LVERLNSNLPPQIRIFGFKRVTASFNAKKFCDRRRYVYLIPVFALDPSSHPDRESVLASV 178
Query: 200 GSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDEN------------ASLNSQVKVD 247
GS NELVKCLECSERGRKV+G+MGKR+++ + +D A L S+ K +
Sbjct: 179 GSENELVKCLECSERGRKVVGIMGKRSFESKVSVDDREDVEGESKNIVGAAILKSEAKEE 238
Query: 248 TVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDLSL 307
++ S+ N RH+ N S+++ + E R + NE ++ +
Sbjct: 239 SMASSDN--RHDGN----------------------SISQPIKEGRCFQ--DNETSESTP 272
Query: 308 D--LDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTR 365
D ++N+ V E+S GE KL KGSGFCYG++E++RFNRIL HYVG+HNFHNFTTR
Sbjct: 273 DSRASAQNEPGVSHSEQSDKGENKLEKGSGFCYGDKERERFNRILGHYVGTHNFHNFTTR 332
Query: 366 TKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQ 425
KAEDPSA+R+I+SF +++V VEGI+F+KCEVVGQSFMLHQIRKMIGLAVA++RN AP+
Sbjct: 333 IKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNVAPE 392
Query: 426 SLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
SL+ETAL KDVNINVPTAPEVGLYLDEC F+SYNKKW+DSHEE
Sbjct: 393 SLLETALLKDVNINVPTAPEVGLYLDECFFSSYNKKWRDSHEE 435
>gi|356500639|ref|XP_003519139.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Glycine max]
Length = 548
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 307/453 (67%), Positives = 362/453 (79%), Gaps = 34/453 (7%)
Query: 20 QEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKN 79
+EP+PK+LKMS T+TSDDE ++ TK++ KRRK+AIFFAYCGVGYQGMQKN
Sbjct: 22 EEPEPKKLKMS-TTTSDDE----------ETGTKKRY-KRRKVAIFFAYCGVGYQGMQKN 69
Query: 80 PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG 139
PGAKTIEGDLEEAL+ SGAV E+DRG P+RYDWARSARTDKGVSAVGQVVSGRF IDPPG
Sbjct: 70 PGAKTIEGDLEEALYVSGAVPEQDRGVPKRYDWARSARTDKGVSAVGQVVSGRFYIDPPG 129
Query: 140 LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASL 199
LV+RLNSNLP+QIRIFGYKRVTASFNAKKFCD+RRYVYL+PVFALD S HRDRE+VMASL
Sbjct: 130 LVDRLNSNLPSQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFALDPSCHRDRETVMASL 189
Query: 200 GSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQ----VKVDTVVSTCNG 255
GSGNELVKCLECSERGRKV+G++G R L L + D A ++S V D VS G
Sbjct: 190 GSGNELVKCLECSERGRKVVGLVGNRKQNLELEAVDVEAGISSNRDSGVTEDVEVSLSKG 249
Query: 256 DRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKNDS 315
D ++ N ES NK N ++ ET++ VQ E T L+ +S N+S
Sbjct: 250 DDNHLNEESGNDNKG--------GMNCKTGLETVI------PVQEEGT--PLNGESVNNS 293
Query: 316 KVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARR 375
++ EE+ VNGE+K GS FCYGE+E++RFN+ILK +VG+HNFHNFTTRTKAEDP+ARR
Sbjct: 294 DILEEEK-VNGEDKPTNGSRFCYGEKERERFNKILKCFVGTHNFHNFTTRTKAEDPAARR 352
Query: 376 YIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKD 435
YIISF A++ + VEG++F+KCEVVGQSFMLHQIRKMIGLAVA++RNCAP+SLI+ ALQ+D
Sbjct: 353 YIISFNANTTLVVEGVEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNCAPESLIDEALQQD 412
Query: 436 VNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
VNINVPTAPEVGLYLDEC F SYN+KWKD HEE
Sbjct: 413 VNINVPTAPEVGLYLDECFFTSYNQKWKD-HEE 444
>gi|307136307|gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucumis melo subsp.
melo]
Length = 519
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 304/466 (65%), Positives = 359/466 (77%), Gaps = 22/466 (4%)
Query: 5 ETNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAI 64
E TE SP +EPDPK+LKMS+T+T+ D+ D+ +A K+Q KRRK+AI
Sbjct: 4 EPPTETRRSPPQPLIEEPDPKKLKMSSTTTTSDDEDVNSNSAAP----KKQRYKRRKVAI 59
Query: 65 FFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSA 124
FFAYCGVGYQGMQKNPGAKTIE DLEEAL+ +GAV E+DRG +RYDWARSARTDKGVSA
Sbjct: 60 FFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARSARTDKGVSA 119
Query: 125 VGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
VGQVVSGRF IDPPG V+RLNSNL QIRIFGYKRVTASFNAKKFCD+RRYVYL+PVFAL
Sbjct: 120 VGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFAL 179
Query: 185 DSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQV 244
D + HRDRESV ASLGS NELVKCLECSERGRKV G+MGKR +++ + + S N
Sbjct: 180 DPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLMGKRNFEVKTAITESDISSNIVN 239
Query: 245 KVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSE--SVNETLVESRTSETVQNEN 302
++ NG ++ S +SNK SV+VEN +E +E + +S +SE
Sbjct: 240 AIEVSDVQANGVLEDSATTS-DSNKQT--SVLVENTATELTVASEGIAKSESSEM----- 291
Query: 303 TDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNF 362
+ L NDS+++ + SVNG+EK F YGEEEK RFNRILKHYVG+HNFHNF
Sbjct: 292 SGLG------NDSEIVVSKESVNGKEK--PSGSFKYGEEEKARFNRILKHYVGTHNFHNF 343
Query: 363 TTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNC 422
TTRTKAEDP+ARR+I+SF A + V VEGI+F+KCEVVGQSFMLHQIRKM+GLAVA++RNC
Sbjct: 344 TTRTKAEDPAARRFIVSFDASTTVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNC 403
Query: 423 APQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
AP+SLIE ALQKDVNINVPTAPEVGLYLDEC+F SYN+KWKD+HEE
Sbjct: 404 APESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEE 449
>gi|449455575|ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Cucumis sativus]
Length = 519
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 301/464 (64%), Positives = 362/464 (78%), Gaps = 18/464 (3%)
Query: 5 ETNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAI 64
E TE SP +EP PK+LKMS+T+T+ D+ D+ +A K+Q KRRK+AI
Sbjct: 4 EPPTETRRSPPQPLIEEPQPKKLKMSSTTTTSDDEDVNSNSAAP----KKQRYKRRKVAI 59
Query: 65 FFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSA 124
FFAYCGVGYQGMQKNPGAKTIE DLEEAL+ +GAV E+DRG +RYDWARSARTDKGVSA
Sbjct: 60 FFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARSARTDKGVSA 119
Query: 125 VGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
VGQVVSGRF IDPPG V+RLNSNL QIRIFGYKRVTASFNAKKFCD+RRYVYL+PVFAL
Sbjct: 120 VGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFAL 179
Query: 185 DSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQV 244
D + HRDRESV ASLGS NELVKCLECSERGRKV G++GKR +++ + + S N+
Sbjct: 180 DPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLIGKRNFEVKTAITESDISSNTVN 239
Query: 245 KVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTD 304
++ NG ++ S +SNK SV+VEN +E + + T ++E+++
Sbjct: 240 AIEVSDVQANGVLEDSATTS-DSNKQT--SVLVENTATE------LNVGSEGTAKSESSE 290
Query: 305 LSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTT 364
+S L S DS+++ + SVNG+EK F YGEEEK RFNRILKHYVG+HNFHNFTT
Sbjct: 291 MS-GLGS--DSEIVVSKESVNGKEK--SSGSFKYGEEEKARFNRILKHYVGTHNFHNFTT 345
Query: 365 RTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAP 424
RTKAEDP+ARR+I+SF A ++V VEGI+F+KCEVVGQSFMLHQIRKM+GLAVA++RNCAP
Sbjct: 346 RTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCAP 405
Query: 425 QSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
+SLIE ALQKDVNINVPTAPEVGLYLDEC+F SYN+KWKD+HEE
Sbjct: 406 ESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEE 449
>gi|147780612|emb|CAN69118.1| hypothetical protein VITISV_031845 [Vitis vinifera]
Length = 559
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 305/496 (61%), Positives = 363/496 (73%), Gaps = 61/496 (12%)
Query: 29 MSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGD 88
MS T+T+ D+ D A TK+ KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGD
Sbjct: 1 MSQTTTTSDDEDCDTTTA-----TKKPRYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGD 55
Query: 89 LEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNL 148
LEEALF SGAV E+DRG+P+R+DWARSARTDKGVSAVGQVVSGRF IDPPGLVERLNSNL
Sbjct: 56 LEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRFYIDPPGLVERLNSNL 115
Query: 149 PTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKC 208
P QIRIFG+KRVTASFNAKKFCD+RRYVYL+PVFALD SSH DRESV+AS+GS NELVKC
Sbjct: 116 PPQIRIFGFKRVTASFNAKKFCDRRRYVYLIPVFALDPSSHPDRESVLASVGSENELVKC 175
Query: 209 LECSERGRKVIGVMGKRTY--------------------QLGLPSNDENASLNSQVK--- 245
LECSERGRKV+G+MGKR++ QLG+PSNDE A +NS+V+
Sbjct: 176 LECSERGRKVVGIMGKRSFESKVSVDDREDVEGESKNIVQLGIPSNDEAAIVNSEVQEEI 235
Query: 246 ---------------VDTVVSTCNGDRHNTNLESVESNKTISESVMVENA--NSESVNET 288
+T+ + E + +ISE V V A SE+ E+
Sbjct: 236 KATSNNNNIDANNSISETIKEEAAKLSSEVDAEIINGENSISEPVKVGAAILKSEAKEES 295
Query: 289 LVES-------RTSETVQ-------NENTDLSLD--LDSKNDSKVMAEERSVNGEEKLLK 332
+ S S+ ++ NE ++ + D ++N+ V E+S GE KL K
Sbjct: 296 MASSDNRHDGNSISQPIKEGRCFQDNETSESTPDSRASAQNEPGVSHSEQSDKGENKLEK 355
Query: 333 GSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGID 392
GSGFCYG++E++RFNRIL HYVG+HNFHNFTTR KAEDPSA+R+I+SF +++V VEGI+
Sbjct: 356 GSGFCYGDKERERFNRILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIE 415
Query: 393 FLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDE 452
F+KCEVVGQSFMLHQIRKMIGLAVA++RN AP+SL+ETAL KDVNINVPTAPEVGLYLDE
Sbjct: 416 FVKCEVVGQSFMLHQIRKMIGLAVAIMRNVAPESLLETALLKDVNINVPTAPEVGLYLDE 475
Query: 453 CIFASYNKKWKDSHEE 468
C F+SYNKKW+DSHEE
Sbjct: 476 CFFSSYNKKWRDSHEE 491
>gi|449485147|ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A,
mitochondrial-like [Cucumis sativus]
Length = 519
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 300/464 (64%), Positives = 361/464 (77%), Gaps = 18/464 (3%)
Query: 5 ETNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAI 64
E TE SP +EP PK+LKMS+T+T+ D+ D+ +A K+Q KRRK+A
Sbjct: 4 EPPTETRRSPPQPLIEEPQPKKLKMSSTTTTSDDEDVNSNSAAP----KKQRYKRRKVAX 59
Query: 65 FFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSA 124
FFAYCGVGYQGMQKNPGAKTIE DLEEAL+ +GAV E+DRG +RYDWARSARTDKGVSA
Sbjct: 60 FFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARSARTDKGVSA 119
Query: 125 VGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
VGQVVSGRF IDPPG V+RLNSNL QIRIFGYKRVTASFNAKKFCD+RRYVYL+PVFAL
Sbjct: 120 VGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFAL 179
Query: 185 DSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQV 244
D + HRDRESV ASLGS NELVKCLECSERGRKV G++GKR +++ + + S N+
Sbjct: 180 DPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLIGKRNFEVKTAITESDISSNTVN 239
Query: 245 KVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTD 304
++ NG ++ S +SNK SV+VEN +E + + T ++E+++
Sbjct: 240 AIEVSDVQANGVLEDSATTS-DSNKQT--SVLVENTATE------LNVGSEGTAKSESSE 290
Query: 305 LSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTT 364
+S L S DS+++ + SVNG+EK F YGEEEK RFNRILKHYVG+HNFHNFTT
Sbjct: 291 MS-GLGS--DSEIVVSKESVNGKEK--SSGSFKYGEEEKARFNRILKHYVGTHNFHNFTT 345
Query: 365 RTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAP 424
RTKAEDP+ARR+I+SF A ++V VEGI+F+KCEVVGQSFMLHQIRKM+GLAVA++RNCAP
Sbjct: 346 RTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCAP 405
Query: 425 QSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
+SLIE ALQKDVNINVPTAPEVGLYLDEC+F SYN+KWKD+HEE
Sbjct: 406 ESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEE 449
>gi|224061937|ref|XP_002300673.1| predicted protein [Populus trichocarpa]
gi|222842399|gb|EEE79946.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 289/423 (68%), Positives = 327/423 (77%), Gaps = 62/423 (14%)
Query: 47 GADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGN 106
G D+TTK+Q KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFH+GAV E+DRG
Sbjct: 4 GGDTTTKKQRYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEQDRGI 63
Query: 107 PRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNA 166
P+RYDWARSARTDKGVSAVGQVVSGRF IDPPGLVERL+SNL Q RIFGYKRVT SFNA
Sbjct: 64 PKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGLVERLHSNLSPQFRIFGYKRVTGSFNA 123
Query: 167 KKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRT 226
KKFCD+RRYVYL+PVFALD SHRDRESV+ASL SG+EL+KCLECSERGRKV G +GKR+
Sbjct: 124 KKFCDRRRYVYLIPVFALDPCSHRDRESVLASLRSGSELIKCLECSERGRKVAGAVGKRS 183
Query: 227 YQL-GLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESV 285
++L SND++AS+ S++K E V
Sbjct: 184 FELTDNSSNDKDASVKSEIK-------------------------------------EEV 206
Query: 286 NETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKR 345
+E +V EN D D K SK E+++KGS FCYGE+EK+R
Sbjct: 207 DEIIVSV--------ENGD-----DEKTKSK-----------EEMVKGSSFCYGEKEKER 242
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFML 405
FNRIL +YVGSHNFHNFTTRTKAEDPSARRYI+SF A + VNVEGI+F+KCEVVGQSFML
Sbjct: 243 FNRILGYYVGSHNFHNFTTRTKAEDPSARRYIVSFEAKTTVNVEGIEFVKCEVVGQSFML 302
Query: 406 HQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDS 465
HQIRKMIG+AVA++RNCAP+SLI+TALQKDVNINVPTAPEVGLYLDEC F SYN+KWKDS
Sbjct: 303 HQIRKMIGVAVAIMRNCAPESLIQTALQKDVNINVPTAPEVGLYLDECFFTSYNQKWKDS 362
Query: 466 HEE 468
HEE
Sbjct: 363 HEE 365
>gi|357480141|ref|XP_003610356.1| tRNA pseudouridine synthase [Medicago truncatula]
gi|355511411|gb|AES92553.1| tRNA pseudouridine synthase [Medicago truncatula]
Length = 530
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 300/475 (63%), Positives = 357/475 (75%), Gaps = 37/475 (7%)
Query: 7 NTEKLPSPSLSPR------QEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRR 60
N++K PS S SP +EP K++KMS T+TSDDE A+ + R KRR
Sbjct: 3 NSDKTPSISSSPALPSAVAEEPATKKVKMS-TTTSDDE-----GCTTAEGSKVRY--KRR 54
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
K+AIFFAYCGVGYQGMQKNPGAKTIEG+LEEAL+ SGAV E+DRG +RYDWARSARTDK
Sbjct: 55 KVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTDK 114
Query: 121 GVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
GVSAVGQVVSGRF IDPPG V+RLNSNLP+QIRIFG+KRVTASF+AKKFCD+RRYVYL+P
Sbjct: 115 GVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCDRRRYVYLIP 174
Query: 181 VFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSND-ENAS 239
VFALD HRDRE+V+ASLGS NELVKCL CSERGRKV GV+G L L + D EN S
Sbjct: 175 VFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLELEAVDVENGS 234
Query: 240 LN------SQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESR 293
N S V D VS GD ++ N ES+ N+ V VE NS++V
Sbjct: 235 SNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNEG---KVSVEEVNSKTV-------- 283
Query: 294 TSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHY 353
V +E+ ++ S+N+ ++ EE+ VN E+ GSGFCYGE+E++RFN ILK Y
Sbjct: 284 ----VSDEDEVAPINGGSENNLGILEEEK-VNREDTAANGSGFCYGEKERERFNNILKCY 338
Query: 354 VGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIG 413
VG+HNFHNFTTR K EDPSA+R+IISF A + V VEG++F+KCE+VGQSFMLHQIRKM+G
Sbjct: 339 VGTHNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMG 398
Query: 414 LAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
LAVA++RNCAP+SLIE ALQKDV+I VPTAPEVGLYLDEC F SYN+KWKD+HEE
Sbjct: 399 LAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEE 453
>gi|357480149|ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago truncatula]
gi|355511415|gb|AES92557.1| tRNA pseudouridine synthase [Medicago truncatula]
gi|388510220|gb|AFK43176.1| unknown [Medicago truncatula]
Length = 530
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 299/475 (62%), Positives = 357/475 (75%), Gaps = 37/475 (7%)
Query: 7 NTEKLPSPSLSPR------QEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRR 60
N++K PS S SP +EP K++KMS T+TSDDE A+ + R KRR
Sbjct: 3 NSDKTPSISSSPALPSAVAEEPATKKVKMS-TTTSDDE-----GCTTAEGSKVRY--KRR 54
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
K+AIFFAYCGVGYQGMQKNPGAKTIEG+LEEAL+ SGAV E+DRG +RYDWARSARTDK
Sbjct: 55 KVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTDK 114
Query: 121 GVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
GVSAVGQVVSGRF IDPPG V+RLNSNLP+QIRIFG+KRVTASF+AKKFCD+RRYVYL+P
Sbjct: 115 GVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCDRRRYVYLIP 174
Query: 181 VFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSND-ENAS 239
VFALD HRDRE+V+ASLGS NELVKCL CSERGRKV GV+G L L + D EN S
Sbjct: 175 VFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLELEAVDVENGS 234
Query: 240 LN------SQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESR 293
N S V D VS GD ++ N ES+ N+ V VE NS++V
Sbjct: 235 SNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNEG---KVSVEEVNSKTV-------- 283
Query: 294 TSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHY 353
V +++ ++ S+N+ ++ EE+ VN E+ GSGFCYGE+E++RFN ILK Y
Sbjct: 284 ----VSDQDEVAPINGGSENNLGILEEEK-VNREDTAANGSGFCYGEKERERFNNILKCY 338
Query: 354 VGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIG 413
VG+HNFHNFTTR K EDPSA+R+IISF A + V VEG++F+KCE+VGQSFMLHQIRKM+G
Sbjct: 339 VGTHNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMG 398
Query: 414 LAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
LAVA++RNCAP+SLIE ALQKDV+I VPTAPEVGLYLDEC F SYN+KWKD+HEE
Sbjct: 399 LAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEE 453
>gi|217074404|gb|ACJ85562.1| unknown [Medicago truncatula]
gi|388491044|gb|AFK33588.1| unknown [Medicago truncatula]
Length = 530
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 299/475 (62%), Positives = 357/475 (75%), Gaps = 37/475 (7%)
Query: 7 NTEKLPSPSLSPR------QEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRR 60
N++K PS S SP +EP K++KMS T+TSDDE A+ + R KRR
Sbjct: 3 NSDKTPSISSSPALPSAVAEEPATKKVKMS-TTTSDDE-----GCTTAEGSKVRY--KRR 54
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
K+AIFFAYCGVGYQGMQKNPGAKTIEG+LEEAL+ SGAV E+DRG +RYDWARSARTDK
Sbjct: 55 KVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTDK 114
Query: 121 GVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
GVSAVGQVVSGRF IDPPG V+RLNSNLP+QIRIFG+KRVTASF+AKKFCD+RRYVYL+P
Sbjct: 115 GVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCDRRRYVYLIP 174
Query: 181 VFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSND-ENAS 239
VFALD HRDRE+V+ASLGS NELVKCL CSERGRKV GV+G L L + D EN S
Sbjct: 175 VFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLELEAVDVENGS 234
Query: 240 LN------SQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESR 293
N S V D VS GD ++ N ES+ N+ V VE NS++V
Sbjct: 235 SNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNEG---KVSVEEVNSKTV-------- 283
Query: 294 TSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHY 353
V +++ ++ S+N+ ++ EE+ VN E+ GSGFCYGE+E++RFN ILK Y
Sbjct: 284 ----VSDQDEVAPINGGSENNLGILEEEK-VNREDTAANGSGFCYGEKERERFNNILKCY 338
Query: 354 VGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIG 413
VG+HNFHNFTTR K EDPSA+R+IISF A + V VEG++F+KCE+VGQSFMLHQIRKM+G
Sbjct: 339 VGTHNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMG 398
Query: 414 LAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
LAVA++RNCAP+SLIE ALQKDV+I VPTAPEVGLYLDEC F SYN+KWKD+HEE
Sbjct: 399 LAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEE 453
>gi|224085970|ref|XP_002307759.1| predicted protein [Populus trichocarpa]
gi|222857208|gb|EEE94755.1| predicted protein [Populus trichocarpa]
Length = 426
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 273/416 (65%), Positives = 323/416 (77%), Gaps = 52/416 (12%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
RKIAIF YCGVGYQGMQKNPGAKTIEGDLEEALFH+GAV E DRG P+RYDWARSARTD
Sbjct: 1 RKIAIFLTYCGVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEHDRGIPKRYDWARSARTD 60
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
KGVSAVGQVVSGRF IDPPGLVERL+SNL QIRIFGYKRVT SFNAKKFCD+RRYVYL+
Sbjct: 61 KGVSAVGQVVSGRFYIDPPGLVERLHSNLSPQIRIFGYKRVTGSFNAKKFCDRRRYVYLI 120
Query: 180 PVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQ-------LGLP 232
PVFAL+ SHRDRESV+ASLGSG+ELVKCL+CSERGRKV+G +GKR+++ +
Sbjct: 121 PVFALNPCSHRDRESVLASLGSGSELVKCLQCSERGRKVVGAVGKRSFESKSDVSPTEIW 180
Query: 233 SNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVES 292
SND++ +L S++K + +S +N E +N I + +MV
Sbjct: 181 SNDKDTALKSEIKEEVSIS--------SNSEDANANPEIKDEIMV--------------- 217
Query: 293 RTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKH 352
+++N ++++ EE+ +KGSGFCYGE+EK+RFNRIL +
Sbjct: 218 ----SIEN------------------GDDKNTKSEEEAIKGSGFCYGEKEKERFNRILNY 255
Query: 353 YVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMI 412
Y+GSHNFHNFTTRTKAEDPSA+RYIISF A + V VEGI+F+KCEVVGQSFMLHQIRKMI
Sbjct: 256 YLGSHNFHNFTTRTKAEDPSAQRYIISFDAKTTVAVEGIEFVKCEVVGQSFMLHQIRKMI 315
Query: 413 GLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
G+AVA++RNCA +SLI+TALQK+VNINVPTAPEVGLYLDEC F SYN+KWKDSHEE
Sbjct: 316 GVAVAIMRNCASESLIQTALQKNVNINVPTAPEVGLYLDECFFTSYNQKWKDSHEE 371
>gi|226506356|ref|NP_001150144.1| LOC100283773 [Zea mays]
gi|195637102|gb|ACG38019.1| tRNA pseudouridine synthase family protein [Zea mays]
Length = 561
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 275/464 (59%), Positives = 333/464 (71%), Gaps = 29/464 (6%)
Query: 25 KRLKMSATSTSDDERDLIPAAA-----GADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKN 79
KR KMS S+SD E D P +A GAD +R KRRK+AI YCG GYQGMQKN
Sbjct: 14 KRPKMS--SSSDPEADAEPTSASAAVEGADPAQRRPRYKRRKVAILLGYCGAGYQGMQKN 71
Query: 80 PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG 139
PGA+TIEGDLEEAL+ +GAV E DR PRRYDWAR+ARTDKGVSA QVVSGRF +DPPG
Sbjct: 72 PGARTIEGDLEEALYQAGAVPEADRSAPRRYDWARAARTDKGVSAAAQVVSGRFYVDPPG 131
Query: 140 LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASL 199
++RLN+ L QIR +GY RVT SFNAKKFCD+RRY+YLLPVFALD S+H DRE+VMAS+
Sbjct: 132 FIDRLNAQLAPQIRAYGYVRVTNSFNAKKFCDRRRYLYLLPVFALDPSAHPDREAVMASM 191
Query: 200 GSGNELVKCLECSERGRKVIGVMGKRTYQLGLP------------SNDENASLNSQVKVD 247
GSG+EL KCLECSERGRK+ GVMG R +L P S+DE+ +L
Sbjct: 192 GSGSELTKCLECSERGRKIPGVMG-REGKLPSPGQNGVDAPVEGSSHDESGTLGDAKCDH 250
Query: 248 TVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNE----NT 303
T N H V SN + V +E N + + S+ V ++ N
Sbjct: 251 TSSDGGNPFAHG----EVGSNSKEKPDLPVSGDGTEVANAEMGSNGDSDVVSSDIYMGNE 306
Query: 304 DLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFT 363
+ L ++N ++ M E+S NGEEKL + F Y +E K+RFNRILK+Y+G+HNFHNFT
Sbjct: 307 EKKLPAATENKAQGMESEKS-NGEEKLPTKTTFSYTDEVKERFNRILKYYIGTHNFHNFT 365
Query: 364 TRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCA 423
TRTKAEDP+A+R+IISF AD VV+++GIDF++CEVVGQSFMLHQIRKMIGLAVAV+RNCA
Sbjct: 366 TRTKAEDPAAKRFIISFAADRVVSLDGIDFVRCEVVGQSFMLHQIRKMIGLAVAVIRNCA 425
Query: 424 PQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHE 467
P+S+ + A +KDVN+NVPTAPEVGLYLDEC+F SYNKKWKDSHE
Sbjct: 426 PESIYDVAFRKDVNLNVPTAPEVGLYLDECMFTSYNKKWKDSHE 469
>gi|242066426|ref|XP_002454502.1| hypothetical protein SORBIDRAFT_04g032290 [Sorghum bicolor]
gi|241934333|gb|EES07478.1| hypothetical protein SORBIDRAFT_04g032290 [Sorghum bicolor]
Length = 567
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 273/468 (58%), Positives = 331/468 (70%), Gaps = 31/468 (6%)
Query: 25 KRLKMSATSTSDDERDLIP-----AAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKN 79
KR KMS S+SD E D P AA GAD +R KRRK+AI YCG GYQGMQKN
Sbjct: 14 KRPKMS--SSSDPEADAEPTSASAAAEGADPAQRRPRYKRRKVAILLGYCGAGYQGMQKN 71
Query: 80 PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG 139
PGA+TIEGDLEEAL+ +GAV E DR PRRYDWAR+ARTDKGVSA QVVSGRF +DPPG
Sbjct: 72 PGARTIEGDLEEALYQAGAVPEADRAAPRRYDWARAARTDKGVSAAAQVVSGRFYVDPPG 131
Query: 140 LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASL 199
++RLN+ L +QIR +GY RVT SF+AKKFCD+RRY+YLLPVFALD S+H DRE+VMAS+
Sbjct: 132 FIDRLNAQLASQIRAYGYVRVTNSFSAKKFCDRRRYLYLLPVFALDPSAHPDREAVMASM 191
Query: 200 GSGNELVKCLECSERGRKVIGVMGKR-------------TYQLGLPSNDENASLNSQVKV 246
GSG+EL KCLECSERGRKV GVMG+ + + + S+DE+ +L
Sbjct: 192 GSGSELTKCLECSERGRKVPGVMGREGKLPSPGQNGVDASAEGSVASHDESGTLGDAKCD 251
Query: 247 DTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDLS 306
T N H V SN + V +E N + + V + + D+
Sbjct: 252 HTSPDGGNPCAHG----EVGSNSKEKLDLPVSGDGTEVANAETGSNGGGDVVPSADADIY 307
Query: 307 LDLDSKNDSKVMAEERS-------VNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNF 359
+ + K V EE++ NGEEKL S F Y +E K+RFNRILK+YVG+HNF
Sbjct: 308 IGNEEKKLEPVATEEKAQGMDSEKSNGEEKLPTKSAFSYTDEVKERFNRILKYYVGTHNF 367
Query: 360 HNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVV 419
HNFTTRTKAEDP+A+R+IISFGAD VV+++GIDF++CEVVGQSFMLHQIRKMIGLAVAV+
Sbjct: 368 HNFTTRTKAEDPAAKRFIISFGADRVVSLDGIDFVRCEVVGQSFMLHQIRKMIGLAVAVM 427
Query: 420 RNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHE 467
RNCAP+++ + A +KDVN+NVPTAPEVGLYLDEC+F SYNKKWKDSHE
Sbjct: 428 RNCAPETIYDVAFRKDVNLNVPTAPEVGLYLDECMFTSYNKKWKDSHE 475
>gi|413938173|gb|AFW72724.1| hypothetical protein ZEAMMB73_421497 [Zea mays]
Length = 565
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 275/468 (58%), Positives = 333/468 (71%), Gaps = 33/468 (7%)
Query: 25 KRLKMSATSTSDDERDLIPAAA-----GADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKN 79
KR KMS S+SD E D P +A GAD +R KRRK+AI YCG GYQGMQKN
Sbjct: 14 KRPKMS--SSSDPEADAEPTSASAAVEGADPAQRRPRYKRRKVAILLGYCGAGYQGMQKN 71
Query: 80 PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG 139
PGA+TIEGDLEEAL+ +GAV E DR PRRYDWAR+ARTDKGVSA QVVSGRF +DPPG
Sbjct: 72 PGARTIEGDLEEALYQAGAVPEADRSAPRRYDWARAARTDKGVSAAAQVVSGRFYVDPPG 131
Query: 140 LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASL 199
++RLN+ L QIR +GY RVT SFNAKKFCD+RRY+YLLPVFALD S+H DRE+VMAS+
Sbjct: 132 FIDRLNAQLAPQIRAYGYVRVTNSFNAKKFCDRRRYLYLLPVFALDPSAHPDREAVMASM 191
Query: 200 GSGNELVKCLECSERGRKVIGVMGKRTYQLGLP------------SNDENASLNSQVKVD 247
GSG+EL KCLECSERGRK+ GVMG R +L P S+DE+ +L K D
Sbjct: 192 GSGSELTKCLECSERGRKIPGVMG-REGKLPSPGQNGVDAPVEGSSHDESGTLG-DAKCD 249
Query: 248 TVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDLSL 307
S N + V SN + V +E N + + V + + D+ +
Sbjct: 250 HTSSDGNNPFAHGE---VGSNSKEKPDLPVSGDRTEVANAKMGSNGDGAVVSSADADIYI 306
Query: 308 DLDSK--------NDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNF 359
+ K N ++ M E+ +NGEEKL S F Y +E K+RFNRILK+Y+G+HNF
Sbjct: 307 GNEEKKLEPAATENKAQGMESEK-INGEEKLPTKSTFSYTDEVKERFNRILKYYIGTHNF 365
Query: 360 HNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVV 419
HNFTTRTKAEDP+A+R+IISF AD VV+++GIDF++CEVVGQSFMLHQIRKMIGLAVAV+
Sbjct: 366 HNFTTRTKAEDPAAKRFIISFAADRVVSLDGIDFVRCEVVGQSFMLHQIRKMIGLAVAVM 425
Query: 420 RNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHE 467
RNCAP+S+ + A +KDVN+NVPTAPEVGLYLDEC+F SYNKKWKDSHE
Sbjct: 426 RNCAPESIYDVAFRKDVNLNVPTAPEVGLYLDECMFTSYNKKWKDSHE 473
>gi|223948195|gb|ACN28181.1| unknown [Zea mays]
gi|413938174|gb|AFW72725.1| tRNA pseudouridine synthase family protein [Zea mays]
Length = 562
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 273/464 (58%), Positives = 329/464 (70%), Gaps = 28/464 (6%)
Query: 25 KRLKMSATSTSDDERDLIPAAA-----GADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKN 79
KR KMS S+SD E D P +A GAD +R KRRK+AI YCG GYQGMQKN
Sbjct: 14 KRPKMS--SSSDPEADAEPTSASAAVEGADPAQRRPRYKRRKVAILLGYCGAGYQGMQKN 71
Query: 80 PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG 139
PGA+TIEGDLEEAL+ +GAV E DR PRRYDWAR+ARTDKGVSA QVVSGRF +DPPG
Sbjct: 72 PGARTIEGDLEEALYQAGAVPEADRSAPRRYDWARAARTDKGVSAAAQVVSGRFYVDPPG 131
Query: 140 LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASL 199
++RLN+ L QIR +GY RVT SFNAKKFCD+RRY+YLLPVFALD S+H DRE+VMAS+
Sbjct: 132 FIDRLNAQLAPQIRAYGYVRVTNSFNAKKFCDRRRYLYLLPVFALDPSAHPDREAVMASM 191
Query: 200 GSGNELVKCLECSERGRKVIGVMGKRTYQLGLP------------SNDENASLNSQVKVD 247
GSG+EL KCLECSERGRK+ GVMG R +L P S+DE+ +L K D
Sbjct: 192 GSGSELTKCLECSERGRKIPGVMG-REGKLPSPGQNGVDAPVEGSSHDESGTLG-DAKCD 249
Query: 248 TVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNE----NT 303
S N + V SN + V +E N + + V ++ N
Sbjct: 250 HTSSDGNNPFAHGE---VGSNSKEKPDLPVSGDRTEVANAKMGSNGDGAVVSSDIYIGNE 306
Query: 304 DLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFT 363
+ L+ + + E +NGEEKL S F Y +E K+RFNRILK+Y+G+HNFHNFT
Sbjct: 307 EKKLEPAATENKAQGMESEKINGEEKLPTKSTFSYTDEVKERFNRILKYYIGTHNFHNFT 366
Query: 364 TRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCA 423
TRTKAEDP+A+R+IISF AD VV+++GIDF++CEVVGQSFMLHQIRKMIGLAVAV+RNCA
Sbjct: 367 TRTKAEDPAAKRFIISFAADRVVSLDGIDFVRCEVVGQSFMLHQIRKMIGLAVAVMRNCA 426
Query: 424 PQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHE 467
P+S+ + A +KDVN+NVPTAPEVGLYLDEC+F SYNKKWKDSHE
Sbjct: 427 PESIYDVAFRKDVNLNVPTAPEVGLYLDECMFTSYNKKWKDSHE 470
>gi|302141694|emb|CBI18897.3| unnamed protein product [Vitis vinifera]
Length = 419
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 266/399 (66%), Positives = 309/399 (77%), Gaps = 54/399 (13%)
Query: 76 MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCI 135
MQKNPGAKTIEGDLEEALF SGAV E+DRG+P+R+DWARSARTDKGVSAVGQVVSGRF I
Sbjct: 1 MQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRFYI 60
Query: 136 DPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESV 195
DPPGLVERLNSNLP QIRIFG+KRVTASFNAKKFCD+RRYVYL+PVFALD SSH DRESV
Sbjct: 61 DPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFCDRRRYVYLIPVFALDPSSHPDRESV 120
Query: 196 MASLGSGNELVKCLECSERGRKVIGVMGKR------TYQLGLPSNDENASLNSQVKVDTV 249
+AS+GS NELVKCLECSERGRKV+G+MGKR QLG+PSNDE A +NS+V+
Sbjct: 121 LASVGSENELVKCLECSERGRKVVGIMGKRKGESKNIVQLGIPSNDEAAIVNSEVQ---- 176
Query: 250 VSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDLSLDL 309
E +++ + + N + SET++ E LS +
Sbjct: 177 -------------EEIKA--------------TSNNNNIDANNSISETIKEEAAKLSSE- 208
Query: 310 DSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAE 369
GE KL KGSGFCYG++E++RFNRIL HYVG+HNFHNFTTR KAE
Sbjct: 209 ----------------GENKLEKGSGFCYGDKERERFNRILGHYVGTHNFHNFTTRIKAE 252
Query: 370 DPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIE 429
DPSA+R+I+SF +++V VEGI+F+KCEVVGQSFMLHQIRKMIGLAVA++RN AP+SL+E
Sbjct: 253 DPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNVAPESLLE 312
Query: 430 TALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
TAL KDVNINVPTAPEVGLYLDEC F+SYNKKW+DSHEE
Sbjct: 313 TALLKDVNINVPTAPEVGLYLDECFFSSYNKKWRDSHEE 351
>gi|218191324|gb|EEC73751.1| hypothetical protein OsI_08404 [Oryza sativa Indica Group]
Length = 581
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 284/493 (57%), Positives = 342/493 (69%), Gaps = 52/493 (10%)
Query: 24 PKRLKMSATSTSDDERDLIPAAAGADSTTKRQL-CKRRKIAIFFAYCGVGYQGMQKNPGA 82
PKR KMS++S D E P+AAGAD R KRRK+AI YCG GYQGMQKNPGA
Sbjct: 13 PKRPKMSSSSDPDQE-PTSPSAAGADGAQPRAPRYKRRKVAILLGYCGAGYQGMQKNPGA 71
Query: 83 KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVE 142
+TIEGDLEEAL+ +GAV E DR PRRYDWAR+ARTDKGVSA QVVSGRF +DPP +
Sbjct: 72 RTIEGDLEEALYRAGAVPEADRAAPRRYDWARAARTDKGVSAAAQVVSGRFYVDPPVFTD 131
Query: 143 RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSG 202
RLN+ L QIR FGY RVT SFNAKKFCD+RRYVYLLPVFALD S+H DRE+VMAS+GSG
Sbjct: 132 RLNAQLAPQIRAFGYVRVTNSFNAKKFCDRRRYVYLLPVFALDPSAHPDREAVMASVGSG 191
Query: 203 NELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVS----TCN---- 254
+EL KCLECSERGRKV GVMG R ++ P+ E S+ + + V S C+
Sbjct: 192 SELTKCLECSERGRKVPGVMG-REGKVPDPALQEEKSVEASREEAAVGSNEDANCDPAST 250
Query: 255 GDRH----------NTNLESVESN--------------------KTISESVMV-----EN 279
GDR NT + + SN +ISE+V N
Sbjct: 251 GDRSVDLPIPDNETNTQITEMRSNGAEKCDVQLSGGTLCSEAVPASISETVCPILNSDSN 310
Query: 280 ANSESVN---ETLVESRTS-ETVQNEN-TDLSLDLDSKNDSKVMAEERSVNGEEKLLKGS 334
NS+SV+ + E + S ETV E+ ++D+ ++++ K + + EE L+ S
Sbjct: 311 TNSDSVDVDPSFVAEKKGSIETVVTEDGKKQAMDVVTEDEKKQDVDYEGSSLEEMPLR-S 369
Query: 335 GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFL 394
F Y E K+RFNRILK YVG+HNFHNFTTRTKAEDP+A+R+IISF AD VVN++GIDF+
Sbjct: 370 AFSYTHEVKERFNRILKKYVGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVNLDGIDFI 429
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454
+CEVVGQSFMLHQIRKMIGLAVAV+RNCAP+S+ + A +KDVN+NVPTAPEVGLYLDEC+
Sbjct: 430 RCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESIYDVAFRKDVNLNVPTAPEVGLYLDECM 489
Query: 455 FASYNKKWKDSHE 467
F SYNKKWKDSHE
Sbjct: 490 FTSYNKKWKDSHE 502
>gi|115447813|ref|NP_001047686.1| Os02g0668400 [Oryza sativa Japonica Group]
gi|50251324|dbj|BAD28300.1| putative pseudouridine synthase 1 [Oryza sativa Japonica Group]
gi|50252138|dbj|BAD28134.1| putative pseudouridine synthase 1 [Oryza sativa Japonica Group]
gi|113537217|dbj|BAF09600.1| Os02g0668400 [Oryza sativa Japonica Group]
Length = 581
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 283/493 (57%), Positives = 341/493 (69%), Gaps = 52/493 (10%)
Query: 24 PKRLKMSATSTSDDERDLIPAAAGADSTTKRQL-CKRRKIAIFFAYCGVGYQGMQKNPGA 82
PKR KMS++S D E P+AAGAD R KRRK+AI YCG GYQGMQKNPGA
Sbjct: 13 PKRRKMSSSSDPDQE-PTSPSAAGADGAQPRAPRYKRRKVAILLGYCGAGYQGMQKNPGA 71
Query: 83 KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVE 142
+TIEGDLEEAL+ +GAV E DR PRRYDWAR+ARTDKGVSA QVVSGRF +DPP +
Sbjct: 72 RTIEGDLEEALYRAGAVPEADRAAPRRYDWARAARTDKGVSAAAQVVSGRFYVDPPVFTD 131
Query: 143 RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSG 202
RLN+ L QIR FGY RVT SFNAKKFCD+RRYVYLLPVFALD S+H DRE+VMAS+GSG
Sbjct: 132 RLNAQLAPQIRAFGYVRVTNSFNAKKFCDRRRYVYLLPVFALDPSAHPDREAVMASVGSG 191
Query: 203 NELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVS----TCN---- 254
+EL KCLECSERGRKV GVMG R ++ P+ E S+ + + V S C+
Sbjct: 192 SELTKCLECSERGRKVPGVMG-REGKVPDPALQEEKSVEASREEAAVGSNEDANCDPAST 250
Query: 255 GDRH----------NTNLESVESNKT------------ISESVMVENA------------ 280
GDR NT + + SN SE+V N+
Sbjct: 251 GDRSVDLPIPDNETNTQITEMRSNGAEKCDVQLSGGTLCSEAVPASNSETVCPILNSDSN 310
Query: 281 -NSESVN---ETLVESRTS-ETVQNEN-TDLSLDLDSKNDSKVMAEERSVNGEEKLLKGS 334
NS+SV+ + E + S ETV E+ ++D+ ++++ K + + EE L+ S
Sbjct: 311 TNSDSVDVDPSFVAEKKGSIETVVTEDGKKQAMDVVTEDEKKQDVDYEGSSLEEMPLR-S 369
Query: 335 GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFL 394
F Y E K+RFNRILK YVG+HNFHNFTTRTKAEDP+A+R+IISF AD VVN++GIDF+
Sbjct: 370 AFSYTHEVKERFNRILKKYVGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVNLDGIDFI 429
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454
+CEVVGQSFMLHQIRKMIGLAVAV+RNCAP+S+ + A +KDVN+NVPTAPEVGLYLDEC+
Sbjct: 430 RCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESIYDVAFRKDVNLNVPTAPEVGLYLDECM 489
Query: 455 FASYNKKWKDSHE 467
F SYNKKWKDSHE
Sbjct: 490 FTSYNKKWKDSHE 502
>gi|297850446|ref|XP_002893104.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338946|gb|EFH69363.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 557
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 271/471 (57%), Positives = 333/471 (70%), Gaps = 33/471 (7%)
Query: 1 MENAETNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCK-- 58
MEN E + EKLP + P +EPD K+LK+S T+ E D AG + +R+ K
Sbjct: 1 MENQEPDIEKLPRDDV-PDREPDHKKLKIS---TTGQEIDSSAVTAGGSNVAERRAPKYR 56
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
RRK+AI FA+CGVGYQGMQKNPGAKTIEG+LEEALFH+GAV + DR PR Y+WARSART
Sbjct: 57 RRKVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARSART 116
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGVSAVGQVVSGRF +DPPG VERLNS LP QIR+FGYKRV SF++KK CD+RRYVYL
Sbjct: 117 DKGVSAVGQVVSGRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKLCDRRRYVYL 176
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKV-IGVMGKRTYQLGLPSNDEN 237
+PVFALD H + E V LG E VKC+EC E+G K+ +G+ + L + D
Sbjct: 177 IPVFALDPCVHSEAEMVRTDLGY--EYVKCVECFEKGYKIPVGIQS----DISLSNFD-- 228
Query: 238 ASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSET 297
+L + VK +T+ S+ N N E ++ + +N +S S E + ES
Sbjct: 229 -ALGTDVKCETLSSSVPNVESNLNSEVLDVADV--SATTEKNPDSSSKAEDMEES----- 280
Query: 298 VQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSH 357
+LDS +S ++A+E NGE + S FCYGE+EK+RFNRIL +YVGSH
Sbjct: 281 ----------NLDSSKESNILAKEEMNNGEGGDMTESKFCYGEKEKERFNRILSYYVGSH 330
Query: 358 NFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVA 417
NFHNFTTRTKA DP+A RYI+SF A++V+N++G DF+KCEVVGQSFMLHQIRKMIGLAVA
Sbjct: 331 NFHNFTTRTKAADPAANRYILSFNANTVINLDGKDFVKCEVVGQSFMLHQIRKMIGLAVA 390
Query: 418 VVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
V+RN AP+SLIETA +KDV INVP APEVGLYLDEC F SYNK++K SHEE
Sbjct: 391 VMRNYAPESLIETAFKKDVRINVPMAPEVGLYLDECFFTSYNKRFKGSHEE 441
>gi|18394855|ref|NP_564112.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|9558589|gb|AAF88152.1|AC026234_3 Contains similarity to a pseudouridine synthase 1 from Homo sapiens
gi|4455035 and contains tRNA pseudoridine synthase
PF|01416 domain. ESTs gb|T76494, gb|W43440 come from
this gene [Arabidopsis thaliana]
gi|14334544|gb|AAK59680.1| unknown protein [Arabidopsis thaliana]
gi|16323470|gb|AAL15229.1| unknown protein [Arabidopsis thaliana]
gi|332191845|gb|AEE29966.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 549
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 271/473 (57%), Positives = 335/473 (70%), Gaps = 35/473 (7%)
Query: 1 MENAETNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCK-- 58
MEN E + EKLP + P +EPD K+LK+S T+ E D G + +R+ K
Sbjct: 1 MENQEPDIEKLPRDDV-PDREPDHKKLKIS---TTGQETDSSAVTTGGSNVAERRAPKYR 56
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
RRK+AI FA+CGVGYQGMQKNPGAKTIEG+LEEALFH+GAV + DR PR Y+WARSART
Sbjct: 57 RRKVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARSART 116
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGVSAVGQVVSGRF +DPPG VERLNS LP QIR+FGYKRV SF++KKFCD+RRYVYL
Sbjct: 117 DKGVSAVGQVVSGRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKFCDRRRYVYL 176
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKV-IGVMGKRTYQLGLPSNDEN 237
+PVFALD H + E V LG E VKC+ECSE+G K+ +GVMGK T D
Sbjct: 177 IPVFALDPCVHGEAEMVRTDLGY--EYVKCVECSEKGYKIPLGVMGKDT--------DCC 226
Query: 238 ASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSET 297
+ + +++ D STC+ + E++ S+ +E+ N NSE ++ V +
Sbjct: 227 DTKSLEIQSDISSSTCDAIGADVKCETLSSSVPSAEN----NLNSEVLDGADVSA----- 277
Query: 298 VQNENTDLSLDLDSKNDSKVMAEERSVNGE-EKLLKG-SGFCYGEEEKKRFNRILKHYVG 355
LS + +S +A+ NGE E + K S FCYGE+EK+RFNRIL +YVG
Sbjct: 278 -------LSSKAEGMEESNTLAKVEMNNGEGEDMTKSESKFCYGEKEKERFNRILSYYVG 330
Query: 356 SHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLA 415
SHNFHNFTTRTKA DP+A RYI+SF A++V+N++G DF+KCEVVGQSFMLHQIRKMIGLA
Sbjct: 331 SHNFHNFTTRTKAADPAANRYILSFNANTVINLDGKDFVKCEVVGQSFMLHQIRKMIGLA 390
Query: 416 VAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
VA++RN AP+SLIE + +KDV INVP APEVGLYLDEC F SYNK++K SHEE
Sbjct: 391 VAIMRNYAPESLIEASFKKDVRINVPMAPEVGLYLDECFFTSYNKRFKGSHEE 443
>gi|357136941|ref|XP_003570061.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Brachypodium distachyon]
Length = 553
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 260/470 (55%), Positives = 326/470 (69%), Gaps = 36/470 (7%)
Query: 25 KRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKT 84
KR KMS++S + E P+AA AD R+ KRRK+AI AYCG GYQGMQKNPGA+T
Sbjct: 14 KRPKMSSSSDPEPE-PTSPSAAAADPGQPRRRYKRRKVAILLAYCGAGYQGMQKNPGART 72
Query: 85 IEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERL 144
IEGDLEEAL+ +GAV E DR PRRY+WAR+ARTDKGVSA QVVSGRF +DPPG V+RL
Sbjct: 73 IEGDLEEALYQAGAVPEADRAAPRRYEWARAARTDKGVSAAAQVVSGRFYVDPPGFVDRL 132
Query: 145 NSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNE 204
N+ L QIR FGY RVT SF+AKKFCD+RRYVYLLPV ALD S+H DRE+VMAS+GSGN+
Sbjct: 133 NAQLAPQIRAFGYVRVTNSFSAKKFCDRRRYVYLLPVLALDPSAHPDREAVMASVGSGNQ 192
Query: 205 LVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVS----TCNGDRHNT 260
L KC+ECSERGRKV +MG+ G N E L +V+TV + NG+
Sbjct: 193 LAKCVECSERGRKVPDIMGRE----GKVPNPEEEILLDASRVETVSTHGEIGSNGNAKFV 248
Query: 261 NLESVESNKT------ISESVMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKND 314
S ++ T + +M + NS + E++ +E N + D++ +D
Sbjct: 249 PASSCDATVTCHGEAGLGGDIMFDIPNSGNG----AEAQNAELGSNGSVDVAASVDVAGS 304
Query: 315 SKVMAEERSV-----------------NGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSH 357
E + V NGEE L + F Y +E K++FNRILK+YVG+H
Sbjct: 305 VVTEKEHKCVPVVGGEEKMEVMDIQKNNGEESPLTKNTFAYTDEVKEKFNRILKYYVGTH 364
Query: 358 NFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVA 417
NFHNFTTRTKAEDP+A+R+IISF A+ VV ++GIDF++CEVVGQSFMLHQIRKM+GLAVA
Sbjct: 365 NFHNFTTRTKAEDPAAKRFIISFTANRVVRLDGIDFVRCEVVGQSFMLHQIRKMVGLAVA 424
Query: 418 VVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHE 467
V+RNCAP+S+ + A +KD+ +NVPTAPEVGL+LDEC+F SYN KWKD+HE
Sbjct: 425 VMRNCAPESIYDVAFRKDIRLNVPTAPEVGLHLDECMFTSYNAKWKDTHE 474
>gi|297850452|ref|XP_002893107.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338949|gb|EFH69366.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 571
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 270/474 (56%), Positives = 336/474 (70%), Gaps = 25/474 (5%)
Query: 1 MENAETNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRR 60
MEN E EKLP + P +EPD K+LK+S T D + A + + +RR
Sbjct: 1 MENQEPEIEKLPQDDV-PDREPDQKKLKISTTGQETD-SSAVTAGGSNVAERRPPKYRRR 58
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
K+AI FA+CGVGYQGMQKNPGAKTIEG+LEEALFH+GAV E DR PR Y+WARSARTDK
Sbjct: 59 KVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPEADRNKPRNYEWARSARTDK 118
Query: 121 GVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
GVSAVGQVVSGRF +DPPG VERLNS LP QIR+FGYKRV SF++KK CD+RRYVYL+P
Sbjct: 119 GVSAVGQVVSGRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKLCDRRRYVYLIP 178
Query: 181 VFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKV-IGVMGKRTYQLGLPSNDENAS 239
VFALD H + E V LG E +KC+ECSE+G K+ +GVMGK T + + S
Sbjct: 179 VFALDPCVHSEAEMVRTDLGY--EYIKCVECSEKGYKIPVGVMGKDT-------DCDTKS 229
Query: 240 LNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESV--MVENANSESVNETLVESRTSET 297
L ++ + +S+ N D T+++ +T+S SV + N NSE ++ V + T +T
Sbjct: 230 L----EIQSDISSSNFDALGTDVKC----ETLSSSVPNVESNLNSEVLDGADVSATTEKT 281
Query: 298 VQNENTDLSLD---LDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYV 354
+ + ++ LDS +S +A+ NG + S CYGE+E +RFNRIL +YV
Sbjct: 282 PDSSSKAHDMEESNLDSSKESNTLAKVEMNNGGGGDMTESKLCYGEKEMERFNRILSYYV 341
Query: 355 GSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGL 414
GSHNFHNFTTRTKA DP+A RYI+SF A++V+N++G DF+KCEVVGQSFMLHQIRKMIGL
Sbjct: 342 GSHNFHNFTTRTKAADPAANRYILSFNANTVINLDGKDFIKCEVVGQSFMLHQIRKMIGL 401
Query: 415 AVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
AVAV+RN AP+SLIETA +KDV INVP APEVGLYLDEC F SYNK++K SHEE
Sbjct: 402 AVAVMRNYAPESLIETAFKKDVRINVPMAPEVGLYLDECFFTSYNKRFKGSHEE 455
>gi|326527051|dbj|BAK04467.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 572
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 259/484 (53%), Positives = 328/484 (67%), Gaps = 45/484 (9%)
Query: 25 KRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKT 84
KR KMS++S + E + +A GAD R+ KRRK+AI AYCG GYQGMQKNPGA+T
Sbjct: 14 KRPKMSSSSDPEPEPTSL-SAVGADPGQPRRRYKRRKVAIILAYCGAGYQGMQKNPGART 72
Query: 85 IEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERL 144
IEGDLEEAL+ +GAV E DR P RY+WAR+ARTDKGVSA QVVSGRF +DPPG ++RL
Sbjct: 73 IEGDLEEALYQAGAVPEADRAAPARYEWARAARTDKGVSAAAQVVSGRFYVDPPGFIDRL 132
Query: 145 NSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNE 204
N+ L QIR FGY RVT SF+AKKFCD+RRYVYLLPV ALD S+H DRE+V AS GS N+
Sbjct: 133 NAKLAPQIRAFGYVRVTNSFSAKKFCDRRRYVYLLPVLALDPSAHPDREAVKASAGSENQ 192
Query: 205 LVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQ-------------------VK 245
L KC+ECSERGRKV +MG+ + LP ++EN L++
Sbjct: 193 LAKCVECSERGRKVPDIMGR---EGKLPDSEENKVLDTSGEETVAAHGELRSNGEAKPFP 249
Query: 246 VDTVVSTCNGDR-------------------HNTNLESVESNKT-ISESVMVENANSESV 285
+V TC+G+ N+ LES+ S K I + V + SE++
Sbjct: 250 TSSVTGTCDGETRLGCDVMIDIASSDNGTEAQNSELESIGSGKCDIEPAEAVPTSASETI 309
Query: 286 --NETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEK 343
+ T+ +V E + DS+ + + NGE L + F Y +E K
Sbjct: 310 FSDSTVGSVDVVASVVAEKGNNFEPADSEKERMQATNIQKENGEGSPLLKNTFAYTDEVK 369
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
++FNRILKHYVG+ NFHNFTTRTKAEDP+A+RYIISF A+SVV+++GIDF++CEVVGQSF
Sbjct: 370 EKFNRILKHYVGTRNFHNFTTRTKAEDPAAKRYIISFTANSVVSLDGIDFVRCEVVGQSF 429
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWK 463
MLHQIRKM+GLAVAV+RNCAP+S+ + A +KD+ +NVPTAPEVGL+LDEC+FASYN KW
Sbjct: 430 MLHQIRKMVGLAVAVMRNCAPESIYDVAFRKDIRLNVPTAPEVGLHLDECMFASYNSKWM 489
Query: 464 DSHE 467
D+HE
Sbjct: 490 DTHE 493
>gi|297842357|ref|XP_002889060.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334901|gb|EFH65319.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 458
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/409 (61%), Positives = 304/409 (74%), Gaps = 32/409 (7%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
+K+AI FA+CGVGYQGMQKNPGAKTIEG+LEEALFH+GAV E RG P+ YD+ARSARTD
Sbjct: 22 QKVAIIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSARTD 81
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
KGVSAVGQVVSGRF +DPPG V+RLNSNLP QIRIFGYK VT SF++KKFCD+RRYVYLL
Sbjct: 82 KGVSAVGQVVSGRFNVDPPGFVDRLNSNLPNQIRIFGYKHVTPSFSSKKFCDRRRYVYLL 141
Query: 180 PVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENAS 239
PVFALD SHRDRE+VMASLG G E VKC ECSERGRK+ G++G +N S
Sbjct: 142 PVFALDPISHRDRETVMASLGPGEEYVKCFECSERGRKIPGLVGNWK-----GTNFVTKS 196
Query: 240 LNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQ 299
L+ Q D + + + R + +E++ SN SV VE S + + + ++E +
Sbjct: 197 LDFQ--SDILSNNSSALRTDVKIEALSSNLASLSSVDVE-VGSIQEDSCKLNTNSTEKIN 253
Query: 300 NENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNF 359
E VMAE + S FCYGE+EK+RFNRIL YVGS+NF
Sbjct: 254 GEGN-------------VMAETK-----------SKFCYGEKEKERFNRILSCYVGSYNF 289
Query: 360 HNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVV 419
HNFTTRTKA+DP+A R IISF A++V+N++GIDF+KCEV+G+SFMLHQIRKM+GLAVA++
Sbjct: 290 HNFTTRTKADDPAANRQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIRKMMGLAVAIM 349
Query: 420 RNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
RNCA +SLI+TA KDVNI VP APEVGLYLDEC F SYNKK++DSHEE
Sbjct: 350 RNCASESLIQTAFSKDVNITVPMAPEVGLYLDECFFTSYNKKFEDSHEE 398
>gi|18411027|ref|NP_565126.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|6573728|gb|AAF17648.1|AC009978_24 T23E18.5 [Arabidopsis thaliana]
gi|21592498|gb|AAM64448.1| unknown [Arabidopsis thaliana]
gi|21703099|gb|AAM74492.1| At1g76120/T23E18_5 [Arabidopsis thaliana]
gi|23308411|gb|AAN18175.1| At1g76120/T23E18_5 [Arabidopsis thaliana]
gi|332197677|gb|AEE35798.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 463
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/439 (57%), Positives = 310/439 (70%), Gaps = 53/439 (12%)
Query: 32 TSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEE 91
T+T+D+E DL + + + +K+AI FA+CGVGYQGMQKNPGAKTIEG+LEE
Sbjct: 3 TTTTDEEIDL---------SCDGGVTEPQKVAIIFAFCGVGYQGMQKNPGAKTIEGELEE 53
Query: 92 ALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQ 151
ALFH+GAV E RG P+ YD+ARSARTDKGVSAVGQVVSGRF +DP G V RLNSNLP Q
Sbjct: 54 ALFHAGAVPESIRGKPKLYDFARSARTDKGVSAVGQVVSGRFIVDPLGFVNRLNSNLPNQ 113
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLEC 211
IRIFGYK VT SF++KKFCD+RRYVYLLPVFALD SHRDRE+VMASLG G E VKC EC
Sbjct: 114 IRIFGYKHVTPSFSSKKFCDRRRYVYLLPVFALDPISHRDRETVMASLGPGEEYVKCFEC 173
Query: 212 SERGRKV-IGVMGK-RTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNK 269
SERGRK+ G++GK + G S D + ++S + + R + +E++ SN
Sbjct: 174 SERGRKIPPGLVGKWKGTNFGTKSLDFQSDISS--------NNSSALRSDIKIEALSSNL 225
Query: 270 TISESVMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEK 329
SV VE +Q ++ L + N E
Sbjct: 226 AGLCSVDVEVGR----------------IQEDSCKL-----------------NTNSSET 252
Query: 330 LLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVE 389
+K S FCYGE+EK+RF+RIL YVGS+NFHNFTTRTKA+DP+A R IISF A++V+N++
Sbjct: 253 KVK-SKFCYGEKEKERFSRILSCYVGSYNFHNFTTRTKADDPTANRQIISFTANTVINLD 311
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLY 449
GIDF+KCEV+G+SFMLHQIRKM+GLAVA++RNCA +SLI++A KDVNI VP APEVGLY
Sbjct: 312 GIDFIKCEVLGKSFMLHQIRKMMGLAVAIMRNCASESLIQSAFSKDVNITVPMAPEVGLY 371
Query: 450 LDECIFASYNKKWKDSHEE 468
LDEC F SYN+ ++DSHEE
Sbjct: 372 LDECFFTSYNRNFEDSHEE 390
>gi|42572123|ref|NP_974152.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|332197678|gb|AEE35799.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 356
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/405 (55%), Positives = 281/405 (69%), Gaps = 53/405 (13%)
Query: 32 TSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEE 91
T+T+D+E DL + + + +K+AI FA+CGVGYQGMQKNPGAKTIEG+LEE
Sbjct: 3 TTTTDEEIDL---------SCDGGVTEPQKVAIIFAFCGVGYQGMQKNPGAKTIEGELEE 53
Query: 92 ALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQ 151
ALFH+GAV E RG P+ YD+ARSARTDKGVSAVGQVVSGRF +DP G V RLNSNLP Q
Sbjct: 54 ALFHAGAVPESIRGKPKLYDFARSARTDKGVSAVGQVVSGRFIVDPLGFVNRLNSNLPNQ 113
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLEC 211
IRIFGYK VT SF++KKFCD+RRYVYLLPVFALD SHRDRE+VMASLG G E VKC EC
Sbjct: 114 IRIFGYKHVTPSFSSKKFCDRRRYVYLLPVFALDPISHRDRETVMASLGPGEEYVKCFEC 173
Query: 212 SERGRKV-IGVMGK-RTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNK 269
SERGRK+ G++GK + G S D + ++S + + R + +E++ SN
Sbjct: 174 SERGRKIPPGLVGKWKGTNFGTKSLDFQSDISS--------NNSSALRSDIKIEALSSNL 225
Query: 270 TISESVMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEK 329
SV VE +Q ++ L + N E
Sbjct: 226 AGLCSVDVEVGR----------------IQEDSCKL-----------------NTNSSET 252
Query: 330 LLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVE 389
+K S FCYGE+EK+RF+RIL YVGS+NFHNFTTRTKA+DP+A R IISF A++V+N++
Sbjct: 253 KVK-SKFCYGEKEKERFSRILSCYVGSYNFHNFTTRTKADDPTANRQIISFTANTVINLD 311
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQK 434
GIDF+KCEV+G+SFMLHQIRKM+GLAVA++RNCA +SLI++A K
Sbjct: 312 GIDFIKCEVLGKSFMLHQIRKMMGLAVAIMRNCASESLIQSAFSK 356
>gi|125583196|gb|EAZ24127.1| hypothetical protein OsJ_07867 [Oryza sativa Japonica Group]
Length = 518
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 237/448 (52%), Positives = 290/448 (64%), Gaps = 65/448 (14%)
Query: 76 MQKNPGAKTIEGDLEEALFHSGAVSERDRG------NPRRYDWARSARTDKGVSAVGQVV 129
MQKNPGA+TIEGD GA+ R G P AR+ARTDKGVSA QVV
Sbjct: 1 MQKNPGARTIEGDP-----GGGALPGRRPGPRPNAPGPAATTGARAARTDKGVSAAAQVV 55
Query: 130 SGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSH 189
SGRF +DPP +RLN+ L QIR FGY RVT SFNAKKFCD+RRYVYLLPVFALD S+H
Sbjct: 56 SGRFYVDPPVFTDRLNAQLAPQIRAFGYVRVTNSFNAKKFCDRRRYVYLLPVFALDPSAH 115
Query: 190 RDRESVMASLGSGNELVKCLECSERGRKVIGVMGK------------------------- 224
DRE+VMAS+GSG+EL KCLECSERGRKV GVMG+
Sbjct: 116 PDREAVMASVGSGSELTKCLECSERGRKVPGVMGREGKVPDPALQEEKSVEASREEAAVG 175
Query: 225 --------------RTYQLGLPSNDENASL-----NSQVKVDTVVS---TCNGDRHNTNL 262
R+ L +P N+ N + N K D +S C+ +N
Sbjct: 176 SNEDANCDPASTGDRSVDLPIPDNETNTQITEMRSNGAEKCDVQLSGGTLCSEAVPASNS 235
Query: 263 ESVESNKTISESVMVENANSESVNETLVESR--TSETVQNEN-TDLSLDLDSKNDSKVMA 319
E+V I S N++S V+ + V + + ETV E+ ++D+ ++++ K
Sbjct: 236 ETV---CPILNSDSNTNSDSVDVDPSFVAEKKGSIETVVTEDGKKQAMDVVTEDEKKQDV 292
Query: 320 EERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIIS 379
+ + EE L+ S F Y E K+RFNRILK YVG+HNFHNFTTRTKAEDP+A+R+IIS
Sbjct: 293 DYEGSSLEEMPLR-SAFSYTHEVKERFNRILKKYVGTHNFHNFTTRTKAEDPAAKRFIIS 351
Query: 380 FGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNIN 439
F AD VVN++GIDF++CEVVGQSFMLHQIRKMIGLAVAV+RNCAP+S+ + A +KDVN+N
Sbjct: 352 FAADRVVNLDGIDFIRCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESIYDVAFRKDVNLN 411
Query: 440 VPTAPEVGLYLDECIFASYNKKWKDSHE 467
VPTAPEVGLYLDEC+F SYNKKWKDSHE
Sbjct: 412 VPTAPEVGLYLDECMFTSYNKKWKDSHE 439
>gi|356573442|ref|XP_003554869.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A,
mitochondrial-like [Glycine max]
Length = 462
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 204/321 (63%), Positives = 237/321 (73%), Gaps = 28/321 (8%)
Query: 20 QEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKN 79
+EP+PK+LKMS T+TSDDE AAG T ++ KRRK+AIFFAYCGVGYQGMQKN
Sbjct: 22 EEPEPKKLKMS-TTTSDDEE----CAAG---TGTKKRYKRRKVAIFFAYCGVGYQGMQKN 73
Query: 80 PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG 139
PGAKTIEGDLEE L+ SGAV E+DRG P+RYDWARSARTDKGVSAVGQVVSGRF IDPPG
Sbjct: 74 PGAKTIEGDLEEVLYVSGAVPEQDRGVPKRYDWARSARTDKGVSAVGQVVSGRFYIDPPG 133
Query: 140 LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASL 199
LV+RLNSNLP+QIRIFGYKRVTASFNAKKFCD+RRYVYL+PVFALD S HRDRE+VMASL
Sbjct: 134 LVDRLNSNLPSQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFALDPSCHRDRETVMASL 193
Query: 200 GSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQ----VKVDTVVSTCNG 255
GSGNELVKCLECSERGRKVIG++G R L L + D A ++S V D VS G
Sbjct: 194 GSGNELVKCLECSERGRKVIGLVGNRKKNLELEAVDVEAGISSNRDSGVTEDVEVSLSKG 253
Query: 256 DRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKNDS 315
D ++ N E NK E ++ ET+V VQ E T + +S N+S
Sbjct: 254 DDNHLNEEYGNDNKGGHEL-------XKTGLETMV------PVQEEGT--PFNGESVNNS 298
Query: 316 KVMAEERSVNGEEKLLKGSGF 336
++ +E+ VNGE+KL GSGF
Sbjct: 299 DILEDEK-VNGEDKLTNGSGF 318
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/34 (85%), Positives = 30/34 (88%), Gaps = 1/34 (2%)
Query: 435 DVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
DVNINVPT PEVGLYLDEC F SYN+KWKD HEE
Sbjct: 329 DVNINVPTXPEVGLYLDECFFTSYNQKWKD-HEE 361
>gi|168058399|ref|XP_001781196.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667349|gb|EDQ53981.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 186/413 (45%), Positives = 263/413 (63%), Gaps = 26/413 (6%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
++RK+A+ AYCG YQGMQ+NPGA TIEG+LE+ALF + A++E + G+ R+ DW R+AR
Sbjct: 55 RKRKVALILAYCGAAYQGMQRNPGAITIEGELEQALFRADAIAECNFGDMRKVDWMRAAR 114
Query: 118 TDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
TDKGVSA+GQ+VS R IDPPGLVER+N +LP IR+FGY RVT++FNAK+ CD+RRY Y
Sbjct: 115 TDKGVSAIGQIVSARLVIDPPGLVERVNQHLPKDIRVFGYTRVTSNFNAKQMCDKRRYEY 174
Query: 178 LLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDEN 237
L+PVFA + +H DRE+ M E V+ L+ E+ RK + E
Sbjct: 175 LVPVFAFNPHAHHDRET-MQMWSDRKENVR-LQRIEK-RKAL----------------EQ 215
Query: 238 ASLNSQVKVDTVVSTCNG--DRHNTNLESVESNKTISESVMVENANSESVNETLVESRTS 295
+ +V V NG +++ + + A +N+ +++ S
Sbjct: 216 KAAGIEVGAADVKDATNGICFFFSSSFFFLFPVMFLILDYGAHMALYSGLNKIFLDAHRS 275
Query: 296 ETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVG 355
TV++ + + K ++ AE S NGEE++ F + + + +R N IL YVG
Sbjct: 276 TTVKSVEVRVEITSVVKEVVEIEAEGTS-NGEEQV----PFVFDDAKLERLNEILGKYVG 330
Query: 356 SHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLA 415
+ N+HNFT R K EDPSA+RYIISF A V+ V+G+ F+ C VVGQSFMLHQIRKMIG A
Sbjct: 331 TRNYHNFTARIKPEDPSAKRYIISFTAGKVIEVQGMQFVPCTVVGQSFMLHQIRKMIGTA 390
Query: 416 VAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
+A++R C P S+I+ ALQ ++N P APE+GL+LDEC +++YNKK+ +SHE+
Sbjct: 391 IAIMRGCVPDSIIDFALQSKNDVNTPMAPELGLFLDECFYSAYNKKFSNSHEK 443
>gi|357480137|ref|XP_003610354.1| tRNA pseudouridine synthase [Medicago truncatula]
gi|355511409|gb|AES92551.1| tRNA pseudouridine synthase [Medicago truncatula]
Length = 361
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 163/283 (57%), Positives = 202/283 (71%), Gaps = 23/283 (8%)
Query: 193 ESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSND-ENASLN------SQVK 245
E+V+ASLGS NELVKCL CSERGRKV GV+G L L + D EN S N S V
Sbjct: 18 ETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLELEAVDVENGSSNKNDVVDSGVT 77
Query: 246 VDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDL 305
D VS GD ++ N ES+ N+ V VE NS++V V +++
Sbjct: 78 KDVEVSLSKGDDNHINKESINYNEG---KVSVEEVNSKTV------------VSDQDEVA 122
Query: 306 SLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTR 365
++ S+N+ ++ EE+ VN E+ GSGFCYGE+E++RFN ILK YVG+HNFHNFTTR
Sbjct: 123 PINGGSENNLGILEEEK-VNREDTAANGSGFCYGEKERERFNNILKCYVGTHNFHNFTTR 181
Query: 366 TKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQ 425
K EDPSA+R+IISF A + V VEG++F+KCE+VGQSFMLHQIRKM+GLAVA++RNCAP+
Sbjct: 182 IKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPE 241
Query: 426 SLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
SLIE ALQKDV+I VPTAPEVGLYLDEC F SYN+KWKD+HEE
Sbjct: 242 SLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEE 284
>gi|302809155|ref|XP_002986271.1| hypothetical protein SELMODRAFT_44320 [Selaginella moellendorffii]
gi|300146130|gb|EFJ12802.1| hypothetical protein SELMODRAFT_44320 [Selaginella moellendorffii]
Length = 363
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/146 (64%), Positives = 115/146 (78%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
RKIAIF +Y G GYQGMQ+N G KTIEGDLEEALF +GA++E G+PR+ DWAR+ARTD
Sbjct: 1 RKIAIFVSYSGYGYQGMQRNKGCKTIEGDLEEALFKAGAIAESTFGDPRKIDWARAARTD 60
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
KGVSA GQVVSGRF +DPPG VER+NS+LP QIR+ G+ RVT +F+AK CD+RRY Y+L
Sbjct: 61 KGVSAAGQVVSGRFFVDPPGFVERVNSHLPKQIRVLGFTRVTGTFSAKNLCDRRRYEYVL 120
Query: 180 PVFALDSSSHRDRESVMASLGSGNEL 205
PVFALD +SHR + + G+ L
Sbjct: 121 PVFALDPASHRVESPTIEAANPGDNL 146
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 74/135 (54%), Positives = 104/135 (77%)
Query: 334 SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDF 393
+GF +G+EE+ + +IL++YVG+ FHNFT R K EDPS +RYI S+ A V ++G F
Sbjct: 183 TGFTFGDEERAKLTKILQNYVGTRYFHNFTCRVKPEDPSTQRYITSYEAGEVFTIQGCKF 242
Query: 394 LKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDEC 453
++C V+GQSFMLHQIRKMIGLAVAV+R AP+++ E A ++D I VP APE+GL+LDEC
Sbjct: 243 VRCTVIGQSFMLHQIRKMIGLAVAVMRGDAPETIFERAFRRDTKIGVPMAPELGLFLDEC 302
Query: 454 IFASYNKKWKDSHEE 468
++ +YN+++ SHEE
Sbjct: 303 LYTAYNQRFAGSHEE 317
>gi|302806719|ref|XP_002985091.1| hypothetical protein SELMODRAFT_44317 [Selaginella moellendorffii]
gi|300147301|gb|EFJ13966.1| hypothetical protein SELMODRAFT_44317 [Selaginella moellendorffii]
Length = 363
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/144 (64%), Positives = 114/144 (79%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
RKIAIF +Y G GYQGMQ+N G KTIEGDLEEALF +GA++E G+PR+ DWAR+ARTD
Sbjct: 1 RKIAIFVSYSGYGYQGMQRNKGCKTIEGDLEEALFKAGAIAESTFGDPRKIDWARAARTD 60
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
KGVSA GQVVSGRF +DPPG VER+NS+LP QIR+ G+ RVT +F+AK CD+RRY Y+L
Sbjct: 61 KGVSAAGQVVSGRFFVDPPGFVERVNSHLPKQIRVLGFTRVTGTFSAKNLCDRRRYEYVL 120
Query: 180 PVFALDSSSHRDRESVMASLGSGN 203
PVFALD +SHR + + G+
Sbjct: 121 PVFALDPASHRVESPTIEAANPGD 144
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 74/135 (54%), Positives = 104/135 (77%)
Query: 334 SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDF 393
+GF +G+EE+ + +IL++YVG+ FHNFT R K EDPS +RYI S+ A V ++G F
Sbjct: 183 TGFTFGDEERAKLTKILQNYVGTRYFHNFTCRVKPEDPSTQRYITSYEAGEVFTIQGCKF 242
Query: 394 LKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDEC 453
++C V+GQSFMLHQIRKMIGLAVAV+R AP+++ E A ++D I VP APE+GL+LDEC
Sbjct: 243 VRCTVIGQSFMLHQIRKMIGLAVAVMRGDAPETIFERAFRRDTKIGVPMAPELGLFLDEC 302
Query: 454 IFASYNKKWKDSHEE 468
++ +YN+++ SHEE
Sbjct: 303 LYTAYNQRFAGSHEE 317
>gi|354543006|emb|CCE39724.1| hypothetical protein CPAR2_601440 [Candida parapsilosis]
Length = 554
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 198/410 (48%), Gaps = 46/410 (11%)
Query: 59 RRKIAIFFAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+RK A+ YCG GY G+Q PG KTIE DL EA + +GA+S + + ++ + R+A
Sbjct: 89 KRKCAVMLGYCGTGYNGLQIQNEPGVKTIEKDLYEAFYKAGAISLENSLDLKKSGFQRTA 148
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
RTDKGV A G VVS + I+ P L +++NS LP QIRI+G +R T F+ +K C R Y
Sbjct: 149 RTDKGVHAAGNVVSLKLIIEDPQLKDKINSYLPDQIRIWGIQRTTKGFDCRKMCSSRVYE 208
Query: 177 YLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSN-- 234
YLLP + L S + + ++ ++ +M ++ + G+ +
Sbjct: 209 YLLPTYCLISPKPGTQLDELIKENKSKYPDLFVDDDGESQQFWQLMKEKVSEAGITQDQL 268
Query: 235 DENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRT 294
D A +N Q G + TN +S KT N ES N T
Sbjct: 269 DAIAQMNEQ--------EAKGTNNTTNPDSTPQEKT--------NLEEESTN-------T 305
Query: 295 SETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYV 354
S+ D+ L +K ++ R + + KRF ++ Y
Sbjct: 306 SQ-------DVPLFRIAKQVKQIENATR-----------RAYRISQHRLKRFTSTMQQYK 347
Query: 355 GSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGL 414
G+HNFHNFT +D S++RYII S + +++ ++ GQSFMLHQIRKMI +
Sbjct: 348 GTHNFHNFTIGKSYKDTSSKRYIIDTTVSSPFVINNTEWISIKLHGQSFMLHQIRKMICM 407
Query: 415 AVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKD 464
A +R P +I Q IN+P AP +GL L+ +F +YN K +D
Sbjct: 408 ATLAIRCDLPSDMIADCFQP-TKINIPKAPALGLLLENPVFDAYNFKLRD 456
>gi|150865014|ref|XP_001384060.2| hypothetical protein PICST_58964 [Scheffersomyces stipitis CBS
6054]
gi|149386270|gb|ABN66031.2| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 476
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 198/404 (49%), Gaps = 59/404 (14%)
Query: 59 RRKIAIFFAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+RK+A+ YCG GY GMQ +P TIE DL EA +GAVS + + ++ + R+A
Sbjct: 79 KRKVAVMIGYCGTGYNGMQLQNDPKIPTIERDLYEAFAAAGAVSPENAMDIKKSGFMRAA 138
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
RTDKGV A G V+S + I+ P ++ ++N LP QIRI+G +RVT SF+ +K C R Y
Sbjct: 139 RTDKGVHAAGNVISLKLIIEDPEILAKINEKLPDQIRIWGIQRVTKSFDCRKMCSSRVYE 198
Query: 177 YLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDE 236
YLLP ++L + +V++ L V+ KR+ + G+ +DE
Sbjct: 199 YLLPTYSLLPPKPK---TVLSDL---------------------VVKKRSEEPGVLRDDE 234
Query: 237 NASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSE 296
+ + E+ K I E + V + + S
Sbjct: 235 EGDVWWK----------------------ETRKAILEEGPFTEEELDDVQNQIQDETVST 272
Query: 297 TVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGS 356
+EN ++ K++ +++ + + + E + F + +K Y G+
Sbjct: 273 KTYDENGSIT------EFGKIIRAIKNIENKRR----RAYTVSTERLELFRQAMKQYEGT 322
Query: 357 HNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAV 416
HNFHNFT +DPS++R++ +EG +++ ++ GQSFMLHQIRKMI +AV
Sbjct: 323 HNFHNFTIGKAFKDPSSKRFMKETTVSDPFIIEGTEWVSIKIHGQSFMLHQIRKMIAMAV 382
Query: 417 AVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
V+R P S I IN+P AP +GL L+ ++ +YN+
Sbjct: 383 LVIRTGCPISRIHDCFS-STKINIPKAPALGLLLENPVYEAYNQ 425
>gi|294655697|ref|XP_002770167.1| DEHA2C04312p [Debaryomyces hansenii CBS767]
gi|199430534|emb|CAG85917.4| DEHA2C04312p [Debaryomyces hansenii CBS767]
Length = 528
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 130/413 (31%), Positives = 203/413 (49%), Gaps = 69/413 (16%)
Query: 59 RRKIAIFFAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
++K+A YCG GY GMQ N KTIEGDL +A +GA+S + + ++ + R+A
Sbjct: 70 KKKVACMIGYCGTGYNGMQIQNNLDVKTIEGDLFQAFVKAGAISPENADDLKKNGFMRAA 129
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
RTDKGV A G V+S + I+ ++E++N LP QIR++G +R SF+ +K C R Y
Sbjct: 130 RTDKGVHAAGNVISCKLIIEDEDILEKINKELPDQIRVWGIERTNKSFDCRKMCSSRVYE 189
Query: 177 YLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDE 236
YLLP ++ S + +V++ ELVK + G
Sbjct: 190 YLLPTYSFLSPKPK---TVLS------ELVKKDKADHPG--------------------- 219
Query: 237 NASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSE 296
V GD+ S++++ + + VN+ ++
Sbjct: 220 -----------IVRDDAEGDKWWAE---------TSQAILDSGISQDDVNKAQAILESTN 259
Query: 297 TVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKG---------SGFCYGEEEKKRFN 347
NEN+++ +K D+K+ E + +L+K + +E + F
Sbjct: 260 NFDNENSEI-----NKEDTKLYNENGEITETGRLIKSIKQIENKRRRSYSVSKERLELFR 314
Query: 348 RILKHYVGSHNFHNFTTRTKAEDPSARRYI-ISFGADSVVNVEGIDFLKCEVVGQSFMLH 406
+K Y GSHNFHNFT +DPSARRY+ ++ +D V +EG +++ ++ GQSFMLH
Sbjct: 315 EAMKQYEGSHNFHNFTLGKLYKDPSARRYMKLTTVSDPFV-IEGTEWVSIKIHGQSFMLH 373
Query: 407 QIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
QIRKMI +AV V+R P S I+ IN+P AP +GL L+ ++ YN
Sbjct: 374 QIRKMISMAVLVIRTGCPISRIQDCFGP-TKINIPKAPALGLLLENPVYEGYN 425
>gi|345569276|gb|EGX52144.1| hypothetical protein AOL_s00043g534 [Arthrobotrys oligospora ATCC
24927]
Length = 745
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 129/427 (30%), Positives = 206/427 (48%), Gaps = 40/427 (9%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ YCG GY+GMQ NP KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 233 KKKVAVLIGYCGTGYKGMQLNPPTKTIEGDLFAAFVAAGAISKANSDDPKKSSLVRCART 292
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ P ++E +N+ L QIR++ T F+ +FCD R Y YL
Sbjct: 293 DKGVHAAGNVISLKLIIESPTVIEDINAQLVPQIRVWDIIPTTNGFSCYQFCDSRVYEYL 352
Query: 179 LPVFAL-------------------DSSSHRDRESVMASLGSGNELVKCL--ECSERGRK 217
+P + ++ RE SLG ++ + E ++G
Sbjct: 353 VPTYCFLPPHPTSYMSKRVAKVAEEENDLEAWRERYEDSLGFWQKVADEVKAELEKQG-- 410
Query: 218 VIGVMGKRTYQLGLPSNDENASLNSQVKVDTVV---STCNGDRHNTNLESVESNKTISES 274
+ Q L S E+A Q V+ + S+ ++ T++ +E + +
Sbjct: 411 ----FSEEVIQQVLNSKAEDAEEQLQNLVNEITDIKSSNTSEKRETSVVELEDGGVVELT 466
Query: 275 VMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGS 334
M + T E +S Q + + S + SK ++ R + +
Sbjct: 467 PM---------DITPDEPTSSTAEQEQEQETSTSAAAHKYSKALSTARKIQKQIIARSKR 517
Query: 335 GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFL 394
F +R + + Y G+H+FHNFT + D SA+RYI +F + ++ ++L
Sbjct: 518 SFRIPSARLERIRKAFELYEGNHSFHNFTIQKTFRDASAKRYIKTFKVSDPIIIDDSEWL 577
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454
+V GQSFM+HQIRKM+G+ + +R P I A + V I +P AP +GL LD +
Sbjct: 578 SLKVHGQSFMMHQIRKMVGMVMLTIRYGCPIERITEAYGRLV-IPIPKAPALGLLLDHPL 636
Query: 455 FASYNKK 461
F +YNKK
Sbjct: 637 FETYNKK 643
>gi|378731692|gb|EHY58151.1| tRNA pseudouridine synthase A, variant [Exophiala dermatitidis
NIH/UT8656]
Length = 698
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 137/447 (30%), Positives = 221/447 (49%), Gaps = 52/447 (11%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY GMQ KTIEGDL +A +GA+S+ + +P++ + R ART
Sbjct: 141 KKKVAVLIGYAGTGYHGMQLTHDKKTIEGDLFKAFVAAGAISKANADDPKKSSFVRCART 200
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ P +V+++N NL QIR++G++R SF++ + D R Y YL
Sbjct: 201 DKGVHAAGNVISLKLIIEDPDIVKKINENLTPQIRVWGFERTNNSFSSYQAVDSRIYEYL 260
Query: 179 LPVFAL---------------------DSSSHRDRESVMASLGS--GNELVKCLECSERG 215
+P + D +R R+ +A E++K + +E
Sbjct: 261 IPSHSFLPPHPSSFLGRKLEEWAEKKGDLDEYRKRQQEVAGWWEKVDEEVIKPI-LAEYD 319
Query: 216 RKVIGVMGKRTYQLG--LPSNDENASL-------------NSQVKVDTVVSTCNGDRHNT 260
V ++ + + G L + ++NA + +S+ VD S + +
Sbjct: 320 EDVRDILERALWFRGGDLDAANDNADVKELTETKNESDVKDSEKTVDVAASKAEIQKSES 379
Query: 261 NLESVESNKT-ISESVMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMA 319
+ VE N + I+ VE + + + + +ET Q T SK +
Sbjct: 380 HTAEVEQNTSKINPEKTVEQTTEDKTEDAEKDHQATET-QGAPT------QSKPGRAAIL 432
Query: 320 EERSVNGEEKLLKGS-GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYII 378
+E S + + + E R L +YVG+ N+HNFT + DPS++R I
Sbjct: 433 QEASKRIRQAYINAKRSYRIPPERLARIQEALNYYVGTKNYHNFTIQKTYRDPSSKRVIK 492
Query: 379 SFGAD-SVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDV 436
SF + + + G ++L +V GQSFM+HQIRKM+G+ VVR C P + E AL +
Sbjct: 493 SFKVNPDPILINGTEWLSMKVHGQSFMMHQIRKMVGMIALVVRCGCDPHRIYE-ALGPE- 550
Query: 437 NINVPTAPEVGLYLDECIFASYNKKWK 463
NI++P AP +GL L+ +F SYNK+ K
Sbjct: 551 NISIPKAPSLGLLLERPVFDSYNKRAK 577
>gi|19075946|ref|NP_588446.1| tRNA pseudouridine synthase Lsp1 [Schizosaccharomyces pombe 972h-]
gi|74627010|sp|O94396.1|PUS1_SCHPO RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|4008551|emb|CAA22472.1| tRNA pseudouridine synthase Lsp1 [Schizosaccharomyces pombe]
gi|6469502|emb|CAB61835.1| pseudouridine synthase [Schizosaccharomyces pombe]
Length = 534
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 135/415 (32%), Positives = 201/415 (48%), Gaps = 33/415 (7%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A YCG GY GMQ NP +KTIEGDL +A +GAVS + +P++ AR+ART
Sbjct: 43 KRKVACLVGYCGSGYHGMQLNPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVALARAART 102
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + ++ L+E++N +LP IR++ R SFN + +C+ R Y Y+
Sbjct: 103 DKGVHAAGNVISLKLIMEDEKLIEKVNEHLPPSIRLWDVIRTINSFNPRTYCESRIYEYM 162
Query: 179 LPVFAL--DSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQ-------- 228
+P +A S +M + E + ++ R + GK +
Sbjct: 163 VPTYAFVPPKPSSILGNCIMKNSPMPAEPINKENINQLSRSLFYEEGKEFWDDYDIAAKE 222
Query: 229 -LGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVE-NANSESVN 286
L L D +N K R L + E+NK V + N + +S +
Sbjct: 223 ILSLYEQDPEGFVNPYSK-----------RGAAALANSENNKGSEAGVSAKTNPDMDSDS 271
Query: 287 ETLV-ESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKR 345
+V E ++V++E+ +D + ER++ E +LK + +
Sbjct: 272 SAIVNEFLKPDSVEDESAGSKIDPSYR-------LERALKHIE-VLKLKNYRISADRLSV 323
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFML 405
L YVG HNFHNFT ++ R I SF A + +++ C+V GQSFML
Sbjct: 324 IRETLNQYVGVHNFHNFTVGQAFHQKNSNRVIRSFTASDPFMIGDTEWISCKVHGQSFML 383
Query: 406 HQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
HQIRKMI LA+ VVR P I+ A +K IN+P P GL L+ F YN+
Sbjct: 384 HQIRKMIALAILVVRTGCPVERIQDAFKK-TKINIPKGPGFGLLLESPFFKGYNE 437
>gi|378731693|gb|EHY58152.1| tRNA pseudouridine synthase A [Exophiala dermatitidis NIH/UT8656]
Length = 700
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 137/447 (30%), Positives = 221/447 (49%), Gaps = 52/447 (11%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY GMQ KTIEGDL +A +GA+S+ + +P++ + R ART
Sbjct: 143 KKKVAVLIGYAGTGYHGMQLTHDKKTIEGDLFKAFVAAGAISKANADDPKKSSFVRCART 202
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ P +V+++N NL QIR++G++R SF++ + D R Y YL
Sbjct: 203 DKGVHAAGNVISLKLIIEDPDIVKKINENLTPQIRVWGFERTNNSFSSYQAVDSRIYEYL 262
Query: 179 LPVFAL---------------------DSSSHRDRESVMASLGS--GNELVKCLECSERG 215
+P + D +R R+ +A E++K + +E
Sbjct: 263 IPSHSFLPPHPSSFLGRKLEEWAEKKGDLDEYRKRQQEVAGWWEKVDEEVIKPI-LAEYD 321
Query: 216 RKVIGVMGKRTYQLG--LPSNDENASL-------------NSQVKVDTVVSTCNGDRHNT 260
V ++ + + G L + ++NA + +S+ VD S + +
Sbjct: 322 EDVRDILERALWFRGGDLDAANDNADVKELTETKNESDVKDSEKTVDVAASKAEIQKSES 381
Query: 261 NLESVESNKT-ISESVMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMA 319
+ VE N + I+ VE + + + + +ET Q T SK +
Sbjct: 382 HTAEVEQNTSKINPEKTVEQTTEDKTEDAEKDHQATET-QGAPT------QSKPGRAAIL 434
Query: 320 EERSVNGEEKLLKGS-GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYII 378
+E S + + + E R L +YVG+ N+HNFT + DPS++R I
Sbjct: 435 QEASKRIRQAYINAKRSYRIPPERLARIQEALNYYVGTKNYHNFTIQKTYRDPSSKRVIK 494
Query: 379 SFGAD-SVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDV 436
SF + + + G ++L +V GQSFM+HQIRKM+G+ VVR C P + E AL +
Sbjct: 495 SFKVNPDPILINGTEWLSMKVHGQSFMMHQIRKMVGMIALVVRCGCDPHRIYE-ALGPE- 552
Query: 437 NINVPTAPEVGLYLDECIFASYNKKWK 463
NI++P AP +GL L+ +F SYNK+ K
Sbjct: 553 NISIPKAPSLGLLLERPVFDSYNKRAK 579
>gi|255540533|ref|XP_002511331.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223550446|gb|EEF51933.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 178
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 98/133 (73%), Positives = 109/133 (81%), Gaps = 3/133 (2%)
Query: 31 ATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLE 90
+T+TSD+E A+ +T K+Q KRRKIAIFFAYCGVGYQGMQKNPG KTIEG+LE
Sbjct: 2 STTTSDEEEIATTASGDETATDKKQRYKRRKIAIFFAYCGVGYQGMQKNPGTKTIEGELE 61
Query: 91 EALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPT 150
EALFH AV E+DRG P+RYDW ARTDKGVSAVGQV+SGRF IDPPGLV RLNS LP+
Sbjct: 62 EALFHFDAVPEQDRGCPKRYDW---ARTDKGVSAVGQVISGRFHIDPPGLVGRLNSILPS 118
Query: 151 QIRIFGYKRVTAS 163
IRIFGYKRVTAS
Sbjct: 119 HIRIFGYKRVTAS 131
>gi|212532769|ref|XP_002146541.1| tRNA pseudouridine synthase, putative [Talaromyces marneffei ATCC
18224]
gi|210071905|gb|EEA25994.1| tRNA pseudouridine synthase, putative [Talaromyces marneffei ATCC
18224]
Length = 571
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 131/432 (30%), Positives = 209/432 (48%), Gaps = 66/432 (15%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY GMQ +P KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 74 KKKVAVMIGYSGTGYHGMQLSPTEKTIEGDLFAAFVAAGAISKANAADPKKSSLVRCART 133
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
D+GV A G VVS + ++ P +V+++N NL QIR++GY+ VT F+ + CD R Y YL
Sbjct: 134 DRGVHAAGNVVSLKLIVEDPDIVQKINDNLSPQIRVWGYETVTKGFSCYQLCDSRMYEYL 193
Query: 179 LPVFAL---DSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSND 235
+P S+H +GK+T QL + D
Sbjct: 194 IPTHCFLPPHPSTH--------------------------------LGKKTVQLAEENED 221
Query: 236 ENASLNSQVKVDTVVSTCNGDRHNTNLESV--ESNKTISESVMVENANS----------E 283
L Q V + + LE V E + + ++ +E +
Sbjct: 222 MEGFLARQEGVLDFWQNIDENEIKPILEKVPEEIRRLVQRALYIEEDGDKGTAVDKEPPQ 281
Query: 284 SVN-----ETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERS-VNGEEKLLKGS--- 334
SVN E E+ SE + +D+ + K+ AE++ +N K +K +
Sbjct: 282 SVNVIAKLEKAQETSASEAGAQQPSDVQ---EEAPKPKLTAEQKEIINTSIKQIKAAYQN 338
Query: 335 ---GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADS-VVNVEG 390
+ + +R L Y+G+ NFHN+T + DPS++R I SF A+ + + G
Sbjct: 339 AKRAYRIPQNRLQRVQDALDKYIGTRNFHNYTIQKTFRDPSSKRIIKSFVANKEPIIING 398
Query: 391 IDFLKCEVVGQSFMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLY 449
+++ +V GQSFM+HQIRKM+ + +VR C P+ + E+ +++P AP +GL
Sbjct: 399 TEWVSLKVHGQSFMMHQIRKMVAMVALIVRCGCDPKIIEESY--GPTKLSIPKAPGLGLL 456
Query: 450 LDECIFASYNKK 461
L+ IF SYNK+
Sbjct: 457 LEHPIFDSYNKR 468
>gi|440634959|gb|ELR04878.1| hypothetical protein GMDG_07103 [Geomyces destructans 20631-21]
Length = 630
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 136/425 (32%), Positives = 208/425 (48%), Gaps = 30/425 (7%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 113 KRKVAVLIGYAGSGYKGMQINTTEKTIEGDLFSAFVTAGAISKANADDPKKSSLVRCART 172
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + ID G+VE++N+ LP QIR++G +R ASF+ + CD R Y YL
Sbjct: 173 DKGVHAAGNVISLKLIIDEEGIVEKINAALPPQIRVWGIERTNASFSCYQTCDSRWYEYL 232
Query: 179 LPVFAL---DSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLP--- 232
+P + S+ ++ V A+ G K + R V G G+ + P
Sbjct: 233 IPTHSFLPPHPQSYLAKKLVDAATAEG----KLEPYNSRQEDVAGFWGETEEKYIKPILE 288
Query: 233 --SNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLV 290
+ AS+ + + + VV + NT E S K + ++ E+ + T
Sbjct: 289 KLDPELRASVMAAIHTEDVVENPD---ENTEEEKTSSGKPGTPALKDESEGGQVKESTST 345
Query: 291 ESR----TSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLK---------GSGFC 337
S TS ++ DL + K + + E +K +
Sbjct: 346 GSTGDAITSPKTTDDKKDLPATTTAAAGEKTGKIPKPLTPLEAAIKEVKAAYIKAKKAYR 405
Query: 338 YGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKC 396
E + R L Y+G+ NFHN+T + ++ SA+R I SF + V V ++L
Sbjct: 406 ISETRRDRVQEALSAYLGTRNFHNYTIQKSFKEDSAKRVIRSFTVNPEPVYVNDTEWLSL 465
Query: 397 EVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFA 456
+V GQSFM+HQIRKM+ + VVR P I + Q + I++P AP +GL L+ +F
Sbjct: 466 KVHGQSFMMHQIRKMVAMVALVVRCGTPIERINESYQ-NHKISIPKAPGLGLLLERPVFD 524
Query: 457 SYNKK 461
SYNK+
Sbjct: 525 SYNKR 529
>gi|146412075|ref|XP_001482009.1| hypothetical protein PGUG_05772 [Meyerozyma guilliermondii ATCC
6260]
Length = 477
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 131/410 (31%), Positives = 196/410 (47%), Gaps = 69/410 (16%)
Query: 59 RRKIAIFFAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
++K+A YCG GY GMQ NP KTIEGDL +A +GA+S + + ++ + R+A
Sbjct: 28 KKKVACMIGYCGTGYNGMQIQNNPDVKTIEGDLFDAFVKAGAISPENADDLKKNAFMRAA 87
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
RTDKGV A G V+S + I+ +++R+NS+LP QIR++G +R SF+ +K C R Y
Sbjct: 88 RTDKGVHAAGNVISCKLIIEDQDILQRINSHLPDQIRVWGIERTNKSFDCRKMCSSRVYE 147
Query: 177 YLLPVFALDSSSHRDRESVMASL--GSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSN 234
YLLP ++L + +V+A L + + L G + + G+
Sbjct: 148 YLLPTYSLLPPKPK---TVLAELVRKAREDHPGVLREDTEGSEWWKNTAQAIRDAGITQE 204
Query: 235 DENAS-----LNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETL 289
D +A+ L+S + +T V T HN N E + + I +EN
Sbjct: 205 DLDAAQAALELSSSLSGETKVKT-----HNENGEITDMGRLIKLIKAIEN---------- 249
Query: 290 VESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRI 349
+ R + V NE +L F
Sbjct: 250 -QQRRAYNVSNERLNL----------------------------------------FREA 268
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIR 409
+K Y GSHNFHNFT +D S+RRY+ + +EG +++ ++ GQSFMLHQIR
Sbjct: 269 MKLYEGSHNFHNFTIGKPFKDASSRRYMKETTVSNPFIIEGTEWVSIKIHGQSFMLHQIR 328
Query: 410 KMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
KMI +AV VVR P + I+ IN+P AP +GL L+ ++ YN
Sbjct: 329 KMIAMAVLVVRTGCPITRIKDCFGP-TKINIPKAPALGLLLENPVYEGYN 377
>gi|346975818|gb|EGY19270.1| tRNA pseudouridine synthase [Verticillium dahliae VdLs.17]
Length = 626
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 129/410 (31%), Positives = 213/410 (51%), Gaps = 22/410 (5%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY G+Q N KTIEGDL +A +GA+S+ + +P++ +R ART
Sbjct: 141 KRKVAVMVGYSGTGYYGLQINWDEKTIEGDLFKAFITAGAISKANADDPKKSSLSRCART 200
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + I+ +V+++N++LP QIR++G +R + SF+A + CD R Y YL
Sbjct: 201 DKGVHAAGNLISLKLIIEDDDIVDKINAHLPDQIRVWGLQRTSNSFSAYQACDSRWYEYL 260
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
LP + L SH D + S E + + + G + + P ++
Sbjct: 261 LPTYCL-LPSHPDSFLWKKLVESAQEKGYYDDFQSKLADMDGFWAEVEEKAIKPILEQ-- 317
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNET-LVESRTSET 297
L QV+ + LE + +++ ES + ++A ++++ + T E
Sbjct: 318 -LEPQVRAEV-------------LERIHASEDHPESALKKSALNDAMQVVPPATAVTGEA 363
Query: 298 VQNENTD-LSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGS 356
E+T ++ +KN V R + K + E + L YVG+
Sbjct: 364 TSAEDTSTIATTGKTKNLGPVDFALRDMKNAYVKAK-RAYQVTPERLDQLQAALDQYVGT 422
Query: 357 HNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVGQSFMLHQIRKMIGLA 415
+NFHN+T + +DPSA+R+I SF + + + ++ +V GQSFM+HQIRKMI +A
Sbjct: 423 YNFHNYTIQKSFKDPSAKRHIKSFQVNKTPIQIRDTQWVSIKVHGQSFMMHQIRKMISMA 482
Query: 416 VAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDS 465
VVR P + I+ + +D I +P AP +GL L+ +F Y++K DS
Sbjct: 483 TLVVRCATPLTRIKESYGED-RIAIPKAPGLGLLLERPVFEGYSRKAVDS 531
>gi|242776451|ref|XP_002478840.1| tRNA pseudouridine synthase, putative [Talaromyces stipitatus ATCC
10500]
gi|218722459|gb|EED21877.1| tRNA pseudouridine synthase, putative [Talaromyces stipitatus ATCC
10500]
Length = 580
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 212/423 (50%), Gaps = 38/423 (8%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY GMQ +P KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 73 KKKVAVMIGYSGTGYHGMQLSPTEKTIEGDLFAAFVAAGAISKANAADPKKSSLVRCART 132
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
D+GV A G VVS + ++ P +V+++N NL QIR++GY+ VT F+ + CD R Y YL
Sbjct: 133 DRGVHAAGNVVSLKLIVEDPDIVKKINDNLSPQIRVWGYEIVTKGFSCYQLCDSRMYEYL 192
Query: 179 LPVFAL---DSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSND 235
+P S+H LG K ++ +E + G + ++ L N
Sbjct: 193 IPTHCFLPPHPSTH---------LGK-----KIVQFAEENEDMEGFLQRQEGVLDFWQNI 238
Query: 236 ENASLNSQV-----KVDTVVSTC---NGDRHNTNLESVESNKTISESVMVENANSESVNE 287
+ + + + ++ +V D + E ++ + +E A + +
Sbjct: 239 DESQIKPILEKVPEEIRRLVQRALYIEDDSDKATVVDKEPHQPVDVIPKLEEAQQSAPPK 298
Query: 288 TLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERS-VNGEEKLLKGS------GFCYGE 340
V+ ++E +N T+ K K+ E++ +N K +K + + +
Sbjct: 299 ASVQQSSTERQENSTTESQTQQPPK--PKLTVEQKEIINSSIKQIKAAYQNAKRAYRIPQ 356
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADS-VVNVEGIDFLKCEVV 399
+R L YVG+ NFHN+T + DPS++R I SF A+ + + G +++ +V
Sbjct: 357 SRLQRVQDALDKYVGTRNFHNYTIQKNFRDPSSKRVIKSFVANKEPIIINGTEWVSLKVH 416
Query: 400 GQSFMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASY 458
GQSFM+HQIRKM+ + +VR C P+ + E+ +++P AP +GL L+ IF SY
Sbjct: 417 GQSFMMHQIRKMVAMVALIVRCGCDPKIIEESY--GPTRLSIPKAPGLGLLLEHPIFDSY 474
Query: 459 NKK 461
N +
Sbjct: 475 NNR 477
>gi|190349084|gb|EDK41674.2| hypothetical protein PGUG_05772 [Meyerozyma guilliermondii ATCC
6260]
Length = 477
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 190/405 (46%), Gaps = 59/405 (14%)
Query: 59 RRKIAIFFAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
++K+A YCG GY GMQ NP KTIEGDL +A +GA+S + + ++ + R+A
Sbjct: 28 KKKVACMIGYCGTGYNGMQIQNNPDVKTIEGDLFDAFVKAGAISPENADDLKKNAFMRAA 87
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
RTDKGV A G V+S + I+ +++R+NS+LP QIR++G +R SF+ +K C R Y
Sbjct: 88 RTDKGVHAAGNVISCKLIIEDQDILQRINSHLPDQIRVWGIERTNKSFDCRKMCSSRVYE 147
Query: 177 YLLPVFALDSSSHRDRESVMASL--GSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSN 234
YLLP ++L + +V+A L + + L G + + G+
Sbjct: 148 YLLPTYSLLPPKPK---TVLAELVRKAREDHPGVLREDTEGSEWWKNTAQAIRDAGITQE 204
Query: 235 DENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRT 294
D +A+ + + HN N E + + I +EN + R
Sbjct: 205 DLDAAQAALESSSSSSGETKVKTHNENGEITDMGRLIKSIKAIEN-----------QQRR 253
Query: 295 SETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYV 354
+ V NE +L F +K Y
Sbjct: 254 AYNVSNERLNL----------------------------------------FREAMKLYE 273
Query: 355 GSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGL 414
GSHNFHNFT +D S+RRY+ + +EG +++ ++ GQSFMLHQIRKMI +
Sbjct: 274 GSHNFHNFTIGKPFKDASSRRYMKETTVSNPFIIEGTEWVSIKIHGQSFMLHQIRKMIAM 333
Query: 415 AVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
AV VVR P + I+ IN+P AP +GL L+ ++ YN
Sbjct: 334 AVLVVRTGCPITRIKDCFGP-TKINIPKAPALGLLLENPVYEGYN 377
>gi|451993346|gb|EMD85820.1| hypothetical protein COCHEDRAFT_1118028 [Cochliobolus
heterostrophus C5]
Length = 582
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 134/443 (30%), Positives = 219/443 (49%), Gaps = 45/443 (10%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFH 95
++ER +PAA A+ + +RK+A+ Y G GY+GMQ + KTIEGDL A
Sbjct: 84 ENERPALPAAFPAEEVEAEERRPKRKVAVMIGYSGTGYKGMQIDNKQKTIEGDLFNAFVA 143
Query: 96 SGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIF 155
+GA+S+ + +P++ R ARTDKGV A G VVS + I+ ++E++NS+LP QIR++
Sbjct: 144 AGAISKANASDPKKSSLVRCARTDKGVHAAGNVVSLKLIIEDDDILEKINSHLPDQIRVW 203
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERG 215
G +R SF+ + CD R Y YL+P S + S
Sbjct: 204 GIQRTIGSFSCYQACDSRWYEYLIPT-----------HSFLPPHPS-------------- 238
Query: 216 RKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESV 275
+GK+ + ND Q +V LES++ +I V
Sbjct: 239 ----SYLGKKLEEYAEKENDLEGYRKRQAEVADFWPEVEEKHIKPILESLDD--SIRPLV 292
Query: 276 MVENANSESVNETLVESRTS-ETVQNENTDLSLDLDSKNDSKVMAE----ERSVNGEEKL 330
+ N ++V+ E + + +T++ + +++LD +S + ++ + E + + K
Sbjct: 293 LEALYNVDAVDAEPDEVKQAIDTIEQKEPNVTLD-NSTDGTRPLPEGVVNQPVLEEAIKT 351
Query: 331 LKGS------GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFG-AD 383
LK + + E + R L Y+G+H +HN+T K D SA+RYI SF A
Sbjct: 352 LKKAYIDIKKAYRISPERQARVQAALDKYLGTHKYHNYTVHKKFNDKSAQRYIKSFKVAP 411
Query: 384 SVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTA 443
+ + ++L +V GQSFM+HQIRKM+G+A VR ++++ + +V + +P A
Sbjct: 412 KPIIINDTEWLSLKVHGQSFMMHQIRKMVGMAALTVRCGTDPAIMDKSFGNEV-VRIPKA 470
Query: 444 PEVGLYLDECIFASYNKKWKDSH 466
P +GL L+ +F SYN K H
Sbjct: 471 PGLGLLLERPVFDSYNAKLAKQH 493
>gi|302656568|ref|XP_003020036.1| hypothetical protein TRV_05897 [Trichophyton verrucosum HKI 0517]
gi|291183816|gb|EFE39412.1| hypothetical protein TRV_05897 [Trichophyton verrucosum HKI 0517]
Length = 570
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/414 (32%), Positives = 198/414 (47%), Gaps = 44/414 (10%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+ + Y G GY GMQ P KTIEGDL A + A+S+ + +P++ + R ART
Sbjct: 98 KKKVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCART 157
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + I+ P +V+++N L QIR++G T F+A +FCD R Y YL
Sbjct: 158 DKGVHAAGNVVSLKLIIEDPDIVQKINEKLNPQIRVWGIIPATKGFSAYQFCDSRMYEYL 217
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P SH + S K +E +E+ D A
Sbjct: 218 IP-------SH----CFLPPHPSTFLAQKMVEMAEK------------------HGDMEA 248
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETV 298
Q +V++ + ++++ V + SE T + + ET
Sbjct: 249 FKERQAEVESYWEETDKKHIQPIIDALPEKIKPYVQAAVGSVGSEEEKATPANNGSGETC 308
Query: 299 QNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEK------KRFNRILKH 352
+ + + D+K E+ VN K ++ + F E + R N L
Sbjct: 309 EEQT-----ESDTKKSDLTPDEQAQVNVAIKDIRTAYFKTKNEYRIPPERLARINAALAL 363
Query: 353 YVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
YVG+ NFHN+T + DPSARR I SF D VV + G ++L +V GQSFM+HQIRK
Sbjct: 364 YVGTKNFHNYTIQKTFRDPSARRLIKSFKISRDPVV-INGTEWLSLKVHGQSFMMHQIRK 422
Query: 411 MIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKD 464
M+ + +VR A IE + Q + I +P AP +GL L+ IF YNKK KD
Sbjct: 423 MVAMVALLVRCGADIKRIEESYQ-NSRIPIPKAPGLGLLLERPIFDGYNKKAKD 475
>gi|425766523|gb|EKV05132.1| TRNA pseudouridine synthase, putative [Penicillium digitatum Pd1]
gi|425775167|gb|EKV13449.1| TRNA pseudouridine synthase, putative [Penicillium digitatum PHI26]
Length = 583
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 127/422 (30%), Positives = 214/422 (50%), Gaps = 50/422 (11%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY GMQ N +TIEGDL AL + GAVS+ + +P++ + R ART
Sbjct: 75 KKKVALLMGYSGTGYSGMQLNEQQRTIEGDLFTALVNVGAVSKANAADPKKSSFVRCART 134
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + ++ +++++N+ L QIR++GY+ + SF+ + CD R Y YL
Sbjct: 135 DKGVHAAGNVVSLKMIVEDEDIIQKINAELSPQIRVWGYEVTSKSFSCYQMCDSRVYEYL 194
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P SH CL +GK+ +L + + +A
Sbjct: 195 MP-------SH------------------CLLPPHPST----YLGKKIIELADKAGELDA 225
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESV-ESNKTISESVMVENANSESVNET-----LVES 292
Q +V + + LE++ E ++I E + ++ + +++ + +
Sbjct: 226 VTARQEEVASYWEDVDEKYIKPILETLPEHIRSIVEKSLYQDESRDALQPSEEKGVFTSA 285
Query: 293 RTSETVQNEN-----TDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFN 347
E VQ E T+ D +++ + ++++ K +K + + +
Sbjct: 286 PAEEPVQQETSEQPVTEHPADGEAQKPFVMDPRQKAITDAIKSIKAAYLTAKRAYRAPAS 345
Query: 348 RI------LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVG 400
RI L Y G+ NFHN+T + +DPSA+R+I SF ++ + ++G ++L +V G
Sbjct: 346 RIARLQECLDRYEGTRNFHNYTIQKTYKDPSAKRHIKSFKVNTTPIIIDGTEWLSLKVHG 405
Query: 401 QSFMLHQIRKMIGLAVAVVRN-CAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
QSFM+HQIRKM+ +A VVR+ C P + ET + I +P AP +GL L+ IF +YN
Sbjct: 406 QSFMMHQIRKMVAMATMVVRSGCHPDRITETYGPE--RIAIPKAPGLGLLLERPIFDAYN 463
Query: 460 KK 461
K
Sbjct: 464 NK 465
>gi|302509324|ref|XP_003016622.1| hypothetical protein ARB_04913 [Arthroderma benhamiae CBS 112371]
gi|291180192|gb|EFE35977.1| hypothetical protein ARB_04913 [Arthroderma benhamiae CBS 112371]
Length = 573
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 136/414 (32%), Positives = 200/414 (48%), Gaps = 41/414 (9%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+ + Y G GY GMQ P KTIEGDL A + A+S+ + +P++ + R ART
Sbjct: 98 KKKVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCART 157
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + I+ P +V+++N L QIR++G T F+A +FCD R Y YL
Sbjct: 158 DKGVHAAGNVVSLKLIIEDPDIVQKINEKLNPQIRVWGIIPATKGFSAYQFCDSRMYEYL 217
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P SH + S K +E +E+ D A
Sbjct: 218 IP-------SH----CFLPPHPSTFLAQKMVEMAEK------------------HGDMEA 248
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETV 298
Q +V++ + ++++ V + SE T + + E
Sbjct: 249 FKERQAEVESYWEETDKKHIQPIIDALPEKIKPYVQAAVGSVGSEEEKATPANTGSGEAC 308
Query: 299 QNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEK------KRFNRILKH 352
+ E T+ + + D+K E+ VN K ++ + F E + R N L
Sbjct: 309 E-EQTEQT-ESDTKKSDLTPDEQARVNVAIKDIRTAYFKAKNEYRIPPERLARINAALAL 366
Query: 353 YVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
YVG+ NFHN+T + DPSARR I SF D VV + G ++L +V GQSFM+HQIRK
Sbjct: 367 YVGTKNFHNYTIQKTFRDPSARRLIKSFKISRDPVV-INGTEWLSLKVHGQSFMMHQIRK 425
Query: 411 MIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKD 464
M+ + +VR A IE + Q + I +P AP +GL L+ IF YNKK KD
Sbjct: 426 MVAMVALLVRCGADIKRIEESYQ-NSRIPIPKAPGLGLLLERPIFDGYNKKAKD 478
>gi|254566437|ref|XP_002490329.1| tRNA:pseudouridine synthase, introduces pseudouridines at positions
26-28, 34-36, 65, and 67 of tRNA [Komagataella pastoris
GS115]
gi|238030125|emb|CAY68048.1| tRNA:pseudouridine synthase, introduces pseudouridines at positions
26-28, 34-36, 65, and 67 of tRNA [Komagataella pastoris
GS115]
Length = 509
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 194/407 (47%), Gaps = 64/407 (15%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A YCG GY GMQ NP KTIEGDL EA SGA+S + + ++ + R+ART
Sbjct: 82 KKKVACLIGYCGTGYHGMQLNPPQKTIEGDLFEAFVESGAISRDNSNDLKKSSFMRAART 141
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ ++E++NS LP IR++GY+R +F+ +K C
Sbjct: 142 DKGVHAAGNVISLKMIIEDEDILEKINSKLPPTIRVWGYERTNKNFDCRKMC-------- 193
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
S R E +M + LP N+
Sbjct: 194 ---------SSRIYEYLMPTFSF-----------------------------LPPK-PNS 214
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETV 298
L Q+K N + + E +K ++ ++E ++ + + ++ T+
Sbjct: 215 PLARQIK------EANEETPGVTRDDPEGSKWWAD--VLEKLHASGITDKDIQDAQEATI 266
Query: 299 QNENTDLSLDLDSKNDSKVMAEE--RSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGS 356
E + DS ++ ++ EE R + E + + +E + N+ ++ Y+G
Sbjct: 267 NKEKNN-----DSDDEPDMLLEEIVRKIKQTENQARRE-YRISKERLELVNKAMQMYIGH 320
Query: 357 HNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAV 416
HNFHNFT +D SA RY+ +EG +++ ++ GQSFMLHQIRKMI +A
Sbjct: 321 HNFHNFTLGKHFKDASANRYMKEITVSEPFVIEGTEWVSIKIHGQSFMLHQIRKMIAMAA 380
Query: 417 AVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWK 463
VVR P I A Q IN+P AP +GL L++ ++ YN + K
Sbjct: 381 LVVRTGCPLGRITEAFQSS-RINIPKAPALGLLLEQPVYEGYNTRLK 426
>gi|451850213|gb|EMD63515.1| hypothetical protein COCSADRAFT_90927 [Cochliobolus sativus ND90Pr]
Length = 625
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 142/469 (30%), Positives = 228/469 (48%), Gaps = 54/469 (11%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFH 95
++ER +PAA A+ + +RK+A+ Y G GY+GMQ + KTIEGDL A
Sbjct: 84 ENERPALPAAFPAEELEAEERRPKRKVAVMIGYSGTGYKGMQIDNKQKTIEGDLFNAFVA 143
Query: 96 SGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIF 155
+GA+S+ + +P++ R ARTDKGV A G VVS + I+ ++E++NS+LP QIR++
Sbjct: 144 AGAISKANASDPKKSSLVRCARTDKGVHAAGNVVSLKLIIEDDDILEKINSHLPDQIRVW 203
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFAL---------------------DSSSHRDRES 194
G +R SF+ + CD R Y YL+P + D +R R++
Sbjct: 204 GIQRTIGSFSCYQACDSRWYEYLIPTHSFLPPHPSSYLGKKLEEYAEIENDLEGYRKRQA 263
Query: 195 VMASLGSGNELVKCLECSERGRK-VIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTC 253
+A E E+ K ++ + L L + ++++Q D V+
Sbjct: 264 EVADF--------WPEVEEKHIKPILESLDDSIQPLVLEALYNVDAVDAQPGQDPVIDAS 315
Query: 254 NGDRHNTNLESVESNKTISESVMVE----NANSESVNETLVESRTSETVQNENTDLSLDL 309
D + + + + E+ M + N + + V+E V+ QNE ++ L
Sbjct: 316 IDDEPDKGKPA--TTEAAKETAMPDADETNTSEQPVDE--VKQAIDAIKQNEP---NVTL 368
Query: 310 DSKNDSKVMAEERSVNG---EE--KLLKGS------GFCYGEEEKKRFNRILKHYVGSHN 358
++ D E VN EE K LK + + E + R L Y+G+H
Sbjct: 369 NNSTDGTRPLPEGVVNQPVLEEAIKTLKKAYIDIKKAYRISPERQARVQAALDKYLGTHK 428
Query: 359 FHNFTTRTKAEDPSARRYIISFG-ADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVA 417
+HN+T K D SA+RYI SF A + + ++L +V GQSFM+HQIRKM+G+A
Sbjct: 429 YHNYTVHKKFNDKSAQRYIKSFKVAPKPIIINDTEWLSLKVHGQSFMMHQIRKMVGMAAL 488
Query: 418 VVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSH 466
VR ++++ + +V + +P AP +GL L+ +F SYN K H
Sbjct: 489 TVRCGTDPAIMDKSFGNEV-VRIPKAPGLGLLLERPVFDSYNAKLAKQH 536
>gi|328350723|emb|CCA37123.1| tRNA pseudouridine synthase A [Komagataella pastoris CBS 7435]
Length = 516
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 194/407 (47%), Gaps = 64/407 (15%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A YCG GY GMQ NP KTIEGDL EA SGA+S + + ++ + R+ART
Sbjct: 89 KKKVACLIGYCGTGYHGMQLNPPQKTIEGDLFEAFVESGAISRDNSNDLKKSSFMRAART 148
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ ++E++NS LP IR++GY+R +F+ +K C
Sbjct: 149 DKGVHAAGNVISLKMIIEDEDILEKINSKLPPTIRVWGYERTNKNFDCRKMC-------- 200
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
S R E +M + LP N+
Sbjct: 201 ---------SSRIYEYLMPTFSF-----------------------------LPPK-PNS 221
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETV 298
L Q+K N + + E +K ++ ++E ++ + + ++ T+
Sbjct: 222 PLARQIK------EANEETPGVTRDDPEGSKWWAD--VLEKLHASGITDKDIQDAQEATI 273
Query: 299 QNENTDLSLDLDSKNDSKVMAEE--RSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGS 356
E + DS ++ ++ EE R + E + + +E + N+ ++ Y+G
Sbjct: 274 NKEKNN-----DSDDEPDMLLEEIVRKIKQTENQARRE-YRISKERLELVNKAMQMYIGH 327
Query: 357 HNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAV 416
HNFHNFT +D SA RY+ +EG +++ ++ GQSFMLHQIRKMI +A
Sbjct: 328 HNFHNFTLGKHFKDASANRYMKEITVSEPFVIEGTEWVSIKIHGQSFMLHQIRKMIAMAA 387
Query: 417 AVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWK 463
VVR P I A Q IN+P AP +GL L++ ++ YN + K
Sbjct: 388 LVVRTGCPLGRITEAFQSS-RINIPKAPALGLLLEQPVYEGYNTRLK 433
>gi|396479511|ref|XP_003840772.1| similar to tRNA pseudouridine synthase [Leptosphaeria maculans JN3]
gi|312217345|emb|CBX97293.1| similar to tRNA pseudouridine synthase [Leptosphaeria maculans JN3]
Length = 615
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 138/450 (30%), Positives = 224/450 (49%), Gaps = 38/450 (8%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFH 95
++E+ +P+A A+ + +RK+A+ Y G GY+GMQ + KTIEGDL A
Sbjct: 84 ENEKPALPSAFPAEEVEAEERRPKRKVAVMIGYSGTGYKGMQIDYKQKTIEGDLFNAFVA 143
Query: 96 SGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIF 155
+GA+S+ + + ++ R ARTDKGV A G VVS + I+ +V+++N NL QIR++
Sbjct: 144 AGAISKANATDHKKSSLVRCARTDKGVHAAGNVVSLKLIIEDEDIVQKINDNLSDQIRVW 203
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERG 215
G +R SF+ + CD R Y YL+P S + S K E +E+
Sbjct: 204 GIQRTVGSFSCYQACDSRWYEYLIPT-----------HSFLPPHPSSFLGKKLEEYAEKE 252
Query: 216 RKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNT--NLESVE----SNK 269
+ G ++ S E + + D++ + H N+E+V+ ++
Sbjct: 253 NDLEGYRSRQAEVANFWSEVEEKHI--KPIRDSLDDSIRPLIHEALYNVEAVDAEPGADP 310
Query: 270 TISESVMVENAN-----SESVNETLVESRTSETVQN-ENTDLSLDLDSKNDSKVMAEERS 323
I S+ +NA +E T E+ E + + + D +L LD+ D E +
Sbjct: 311 IIDASMDDKNAEETTSATEGAESTTAETEVKEAIDSIQQNDSNLTLDNTTDGTKPLPEGT 370
Query: 324 VNGE--EKLLKGSGFCYGEEEK---------KRFNRILKHYVGSHNFHNFTTRTKAEDPS 372
NG E+ +K Y + +K +R L +Y+G+H +HN+T + K D S
Sbjct: 371 ANGSALEEAVKALKKAYIDVKKAYRISPIRQERVQAALNNYLGTHKYHNYTVQKKFSDKS 430
Query: 373 ARRYIISFG-ADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETA 431
A+RYI SF A + + ++L +V GQSFM+HQIRKM+G+A VR +I+ +
Sbjct: 431 AQRYIKSFKVAPKPIIINDTEWLSLKVHGQSFMMHQIRKMVGMAALSVRCGTDPKIIQES 490
Query: 432 LQKDVNINVPTAPEVGLYLDECIFASYNKK 461
V + +P AP +GL L+ +F SYN+K
Sbjct: 491 FGNTV-VRIPKAPGLGLLLERPVFDSYNEK 519
>gi|330924858|ref|XP_003300809.1| hypothetical protein PTT_12161 [Pyrenophora teres f. teres 0-1]
gi|311324870|gb|EFQ91095.1| hypothetical protein PTT_12161 [Pyrenophora teres f. teres 0-1]
Length = 631
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 146/473 (30%), Positives = 231/473 (48%), Gaps = 53/473 (11%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFH 95
++ER +PAA A+ + +RK+A+ Y G GY+GMQ + KTIEGDL A
Sbjct: 83 ENERPALPAAFPAEEIEAEERRPKRKVAVMIGYSGTGYKGMQIDNKQKTIEGDLFNAFVA 142
Query: 96 SGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIF 155
+GA+S+ + +P++ R ARTDKGV A G VVS + I+ +V+++NS+L QIR++
Sbjct: 143 AGAISKANAVDPKKVSLVRCARTDKGVHAAGNVVSLKLIIEDEDIVDKINSHLTDQIRVW 202
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFAL---------------------DSSSHRDRES 194
G +R SF+ + CD R Y YL+P + D +R R++
Sbjct: 203 GIQRTVGSFSCYQACDSRWYEYLIPTHSFLPPHPSSFLGKKLEEFAEKENDLEGYRARQA 262
Query: 195 VMASLGSGNE------LVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDT 248
+A+ E ++ L+ S R V + Y + P+ E+ +++ ++
Sbjct: 263 EVANFWPEVEEKHIKPILDSLDDSIRPL-VQEALYNMEY-IDAPAG-EDRIVDASIEKQE 319
Query: 249 VVSTCNGDRHNTNLESV--ESNKTISESVMVENANSESVNETLVESRTSETVQNENTDLS 306
D + N+ E+ K + V ++ S+ V E + S QN D S
Sbjct: 320 AEKEKAADEKDANMTEAAEETAKPDASEVEPKSQPSDEVKEAI-----SAIEQN---DPS 371
Query: 307 LDLDSKNDSKVMAEERSVNG---EE--KLLKGS------GFCYGEEEKKRFNRILKHYVG 355
+ LDS D VN EE K+LK + + E + R L +Y+G
Sbjct: 372 ITLDSTTDGTRPLPPGVVNQSPLEEAIKILKKTYIDIKKAYRISPERQARVQAALDNYLG 431
Query: 356 SHNFHNFTTRTKAEDPSARRYIISFG-ADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGL 414
+H +HN+T K D SA+RYI SF A + + ++L +V GQSFM+HQIRKM+G+
Sbjct: 432 THRYHNYTVHKKYNDKSAQRYIKSFQVAPKPIIINDTEWLSLKVHGQSFMMHQIRKMVGM 491
Query: 415 AVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHE 467
A VR ++E + +V + +P AP +GL L+ +F SYN K H+
Sbjct: 492 AALTVRCGTNPKIMEDSFGNNV-VRIPKAPGLGLLLERPVFDSYNAKLAKQHD 543
>gi|255719542|ref|XP_002556051.1| KLTH0H03894p [Lachancea thermotolerans]
gi|238942017|emb|CAR30189.1| KLTH0H03894p [Lachancea thermotolerans CBS 6340]
Length = 546
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 134/443 (30%), Positives = 210/443 (47%), Gaps = 80/443 (18%)
Query: 32 TSTSDDERDLIPAA----AGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEG 87
T +S+ + + P A +G + +++L KR K+A+ YCG GY GMQ NP TIE
Sbjct: 44 TESSNKKAKIDPTAEVKISGNEEVKEKRLPKR-KVAVMIGYCGTGYHGMQYNPPTPTIEA 102
Query: 88 DLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSN 147
+L A +GA+S+ + + ++ + R+ARTDKGV A G VVS + I+ P ++ ++NS
Sbjct: 103 ELFRAFVEAGAISQANSKDLKKSGFMRAARTDKGVHAGGNVVSLKLIIEDPDIIAKINSK 162
Query: 148 LPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVK 207
LP IR++ +RV +F+ +K C R Y YLLP ++L G+ L
Sbjct: 163 LPEGIRVWDIERVNKAFDCRKLCGSRWYEYLLPTYSL------------VGPKPGSALYN 210
Query: 208 CLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVES 267
+E S+ +++ GVM P ++E+A + E +E
Sbjct: 211 DIEASK--KEIPGVM---------PDDEESAKFWASF-----------------FEEIEQ 242
Query: 268 NKTISESVMVENANSESVNETLVESRTSETVQN----ENTDLSLDLDSKNDSKVMAEERS 323
T E ++++ +E + T + V+N EN A R+
Sbjct: 243 KFTPEELELIKSYTPPPRDEFDDDDPTYQLVKNYKLIEN----------------AHRRA 286
Query: 324 VNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFG 381
E L+ F +K Y+G HNF NFT + +DPSA R++ I
Sbjct: 287 YRISESRLEA------------FRAAMKQYLGPHNFFNFTLGKEFKDPSAIRFMKEIKVS 334
Query: 382 ADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP 441
V+ +++ ++ GQSFMLHQIRKMI +A V R P I A K IN+P
Sbjct: 335 DPFVIGERNTEWVSIKIHGQSFMLHQIRKMISMATLVTRCSCPVDRITDAY-KPQKINIP 393
Query: 442 TAPEVGLYLDECIFASYNKKWKD 464
AP +GL L+ ++ YNK+ K+
Sbjct: 394 KAPALGLLLECPVYEGYNKRLKE 416
>gi|326469581|gb|EGD93590.1| tRNA pseudouridine synthase [Trichophyton tonsurans CBS 112818]
Length = 582
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 135/414 (32%), Positives = 197/414 (47%), Gaps = 42/414 (10%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+ + Y G GY GMQ P KTIEGDL A + A+S+ + +P++ + R ART
Sbjct: 98 KKKVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCART 157
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + I+ P +V+++N L QIR++G T F+A +FCD R Y YL
Sbjct: 158 DKGVHAAGNVVSLKLIIEDPDIVQKINEKLNPQIRVWGIIPATKGFSAYQFCDSRMYEYL 217
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P SH + S K +E +E+ D A
Sbjct: 218 IP-------SH----CFLPPHPSTFLAQKMVEMAEK------------------HGDMEA 248
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETV 298
Q +V++ + + ++++ V + E T +ET
Sbjct: 249 FRERQAEVESYWEETDKKHIQSIIDALPEKIKPYVQAAVGSVGGEEEKATPA---NNETE 305
Query: 299 QNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEK------KRFNRILKH 352
E + + D+K E+ VN K ++ + F E + R N L
Sbjct: 306 AGEACEGRTESDTKKSDLTPDEQAQVNVAIKDIRTAYFKAKNEYRIPPERLARINAALAL 365
Query: 353 YVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
YVG+ NFHN+T + DPSARR I SF D VV + G ++L +V GQSFM+HQIRK
Sbjct: 366 YVGTKNFHNYTIQKTFRDPSARRLIKSFKISRDPVV-INGTEWLSLKVHGQSFMMHQIRK 424
Query: 411 MIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKD 464
M+ + +VR A IE + Q + I +P AP +GL L+ IF YNKK KD
Sbjct: 425 MVAMVALLVRCGADIKRIEESYQ-NSRIPIPKAPGLGLLLERPIFDGYNKKAKD 477
>gi|310791388|gb|EFQ26915.1| tRNA pseudouridine synthase A [Glomerella graminicola M1.001]
Length = 614
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 136/448 (30%), Positives = 215/448 (47%), Gaps = 44/448 (9%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFH 95
D + +P A+ +RK+A+ Y G GY+GMQ N KTIEGDL +A
Sbjct: 100 DGNPEAVPTPFTAEEIAAEGRRPKRKVAVMVGYSGTGYKGMQINNEEKTIEGDLFKAFVA 159
Query: 96 SGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIF 155
+GA+S+ + + ++ R ARTDKGV A G V+S + I+ +V+++N+NLP QIR++
Sbjct: 160 AGAISKANADDHKKSSLVRCARTDKGVHAAGNVISLKLIIEDEDIVDKINANLPEQIRVW 219
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFAL-----DSSSHRDRESVMASLGSGNELVKCL- 209
G +R SF+ + CD R Y YLLP + L DS + V G E K L
Sbjct: 220 GIQRTNNSFSCYQTCDSRWYEYLLPTYCLLPPHPDSWLWKQLVEVAKEKGYYEEFQKKLA 279
Query: 210 -------ECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNL 262
E E+ K I L + A + ++ D +
Sbjct: 280 DVEGYWREVDEKDIKPI---------LERLDPETRAKVMERIHADEDAAGGGEAEEPKAA 330
Query: 263 ESVESNKTISESVMVENANSESVNETLVESRTSE-TVQNENTDLS-LDLDSKN--DSKVM 318
++ + +E V + +E ET + E +V+ N DL+ LD ++ + +
Sbjct: 331 AETKAEEKPAEPV---SQPTEPAAETKTPAEVPEGSVKPRNRDLTPLDFALRDIKAAYIA 387
Query: 319 AEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYII 378
A+ R E+L + L Y G+ NFHN+T + +DPSA+R+I
Sbjct: 388 AKRRYRVTPERL-------------SQLQAALSEYCGTINFHNYTVQKSFKDPSAKRHIK 434
Query: 379 SFGADS-VVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVN 437
SF ++ + + +++ +V GQSFM+HQIRKM+G+A VVR P I +
Sbjct: 435 SFQVNTQPIQIRDTEWVSLKVHGQSFMMHQIRKMVGMASLVVRCATPLERIRQSYGP-TR 493
Query: 438 INVPTAPEVGLYLDECIFASYNKKWKDS 465
I +P AP +GL L+ +F +YN++ KD+
Sbjct: 494 IAIPKAPGLGLLLERPVFDAYNRRAKDN 521
>gi|430811918|emb|CCJ30624.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 443
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/403 (31%), Positives = 193/403 (47%), Gaps = 52/403 (12%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A YCG GY G+Q N ++TIE D+ EAL GA+S + +P++ R+ART
Sbjct: 55 KRKVACLIGYCGTGYHGLQLNDPSRTIERDIFEALVRVGAISVMNSDDPKKSSLNRAART 114
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
D+GV A ++S + I+ L+E +N+ LP IR++ R SFN K FCD R Y YL
Sbjct: 115 DRGVHAACNLISLKMIIEQQNLLETINAALPESIRMWSITRTLGSFNPKTFCDSRIYEYL 174
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P + + S +A + K E + + + + G Y L +
Sbjct: 175 VPSYVFLPPYPK---SFLA-----QRITKHREIINKEKNSVWIYGNE-YMLYCKDKKDIW 225
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETV 298
L Q +L+++++ IS ++ EN E L S ++
Sbjct: 226 DLEKQ----------------HHLKNLDNETCISNKIINENN-----KEPLFTSNQTQES 264
Query: 299 QNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHN 358
Q + + ++L K + ++ AE +L++ + K + GSHN
Sbjct: 265 QEKEEERRIELKIKKEYRISAERL------QLVRDA---------------FKIFEGSHN 303
Query: 359 FHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAV 418
FHNFT D S R I SF ++ I+++ +V GQSFMLHQIRKM+ L + V
Sbjct: 304 FHNFTVGKPFNDKSVYRMIRSFTVSDPKVIQEIEWISLKVHGQSFMLHQIRKMVALIILV 363
Query: 419 VRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
VR P S I K N+P AP +GL L++ IF+ YNK+
Sbjct: 364 VRCGTPLSFISETF-KSTRYNIPKAPSLGLLLEKPIFSGYNKR 405
>gi|189209550|ref|XP_001941107.1| tRNA pseudouridine synthase 1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187977200|gb|EDU43826.1| tRNA pseudouridine synthase 1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 595
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 146/473 (30%), Positives = 230/473 (48%), Gaps = 53/473 (11%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFH 95
++ER +PAA A+ + +RK+A+ Y G GY+GMQ + KTIEGDL A
Sbjct: 74 ENERPALPAAFPAEEIEAEERRPKRKVAVMIGYSGTGYKGMQIDNKQKTIEGDLFNAFVA 133
Query: 96 SGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIF 155
+GA+S+ + +P++ R ARTDKGV A G VVS + I+ +V+++NS+L QIR++
Sbjct: 134 AGAISKANAVDPKKVSLVRCARTDKGVHAAGNVVSLKLIIEDEDIVDKINSHLTDQIRVW 193
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFAL---------------------DSSSHRDRES 194
G +R SF+ + CD R Y YL+P + D +R R++
Sbjct: 194 GIQRTVGSFSCYQACDSRWYEYLIPTHSFLPPHPSSFLGKKLEEFAEKENDLEGYRARQA 253
Query: 195 VMASLGSGNE------LVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDT 248
+A+ E ++ L+ S R V + Y + P+ E+ +++ ++
Sbjct: 254 EVANFWPEVEEKHIKPILDSLDDSIRPL-VQEALYNMEY-IDAPAG-EDRIVDASIEKQE 310
Query: 249 VVSTCNGDRHNTNLESV--ESNKTISESVMVENANSESVNETLVESRTSETVQNENTDLS 306
D +TN+ E+ K + V ++ S+ E + S QN D S
Sbjct: 311 AEKEKAADGKDTNMTEAAEETAKLDASEVEPKSQPSDEAKEVI-----SAVEQN---DPS 362
Query: 307 LDLDSKNDSKVMAEERSVNG---EE--KLLKGS------GFCYGEEEKKRFNRILKHYVG 355
+ LDS D VN EE K LK + + E + R L +Y+G
Sbjct: 363 ITLDSTTDGTRPLPPGVVNQSPLEEAIKTLKKTYIDIKKAYRISPERQARVQAALNNYLG 422
Query: 356 SHNFHNFTTRTKAEDPSARRYIISFG-ADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGL 414
+H +HN+T K D SA+RYI SF A + + ++L +V GQSFM+HQIRKM+G+
Sbjct: 423 THRYHNYTVHKKYNDKSAQRYIKSFQVAPKPIIINDTEWLSLKVHGQSFMMHQIRKMVGM 482
Query: 415 AVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHE 467
A VR ++E + +V + +P AP +GL L+ +F SYN K H+
Sbjct: 483 AALTVRCGTNPEIMEESFGNNV-VRIPKAPGLGLLLERPVFDSYNAKLAKQHD 534
>gi|169619633|ref|XP_001803229.1| hypothetical protein SNOG_13015 [Phaeosphaeria nodorum SN15]
gi|111058695|gb|EAT79815.1| hypothetical protein SNOG_13015 [Phaeosphaeria nodorum SN15]
Length = 621
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 131/443 (29%), Positives = 215/443 (48%), Gaps = 59/443 (13%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ + KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 104 KRKVAVMIGYSGTGYKGMQIDNKQKTIEGDLFTAFVAAGAISKANADDPKKSSLVRCART 163
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ +VE++NS+L QIR++G +R T SF+ + CD R Y YL
Sbjct: 164 DKGVHAAGNVISLKLIIEEEDIVEKINSHLSEQIRVWGIQRTTGSFSCYQACDSRWYEYL 223
Query: 179 LPVFAL---------------------DSSSHRDRESVMASLGSGNE------LVKCLEC 211
+P A D ++R R++ +A+ + E ++ L+
Sbjct: 224 IPTHAFLPPHPSSFLGKKLEEYAEKEGDMDAYRARQAEVANFWAETEEKYIKPILDSLDD 283
Query: 212 SERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVE--SNK 269
S R Q L + D + +D + T + E+ E +
Sbjct: 284 SIRP----------LVQDALYTQDSVDAPPGDPLIDASIDTAGTEPAPPKEEAAEETAKP 333
Query: 270 TISESVMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEK 329
E + V+ E V + + + +Q + +L+LD ++ + ++ V+ E+
Sbjct: 334 DAGEPMNVDKPEDE-VKDMV------DAIQQQEPNLTLDSETDGSVPLPSKTVHVSPLEE 386
Query: 330 LLKGSGFCY---------GEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF 380
+K Y E + R L +Y+G+ +HN+T + K D SA+RYI SF
Sbjct: 387 AVKALKAAYLSAKKSYRISPERQARVQAALNNYLGTRKYHNYTVQKKFSDKSAQRYIKSF 446
Query: 381 G-ADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNI 438
A + + ++L +V GQSFM+HQIRKM+G+ VR P +IE+ + +
Sbjct: 447 KVAPKPIIINDTEWLSLKVHGQSFMMHQIRKMVGMVALTVRCGSNPDIMIESF--GNTIV 504
Query: 439 NVPTAPEVGLYLDECIFASYNKK 461
+P AP +GL L+ +F SYN+K
Sbjct: 505 RIPKAPGLGLLLERPVFDSYNEK 527
>gi|326478893|gb|EGE02903.1| tRNA pseudouridine synthase [Trichophyton equinum CBS 127.97]
Length = 582
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 136/414 (32%), Positives = 198/414 (47%), Gaps = 42/414 (10%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+ + Y G GY GMQ P KTIEGDL A + A+S+ + +P++ + R ART
Sbjct: 98 KKKVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCART 157
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + I+ P +V+++N L QIR++G T F+A +FCD R Y YL
Sbjct: 158 DKGVHAAGNVVSLKLIIEDPDIVQKINEKLNPQIRVWGIIPATKGFSAYQFCDSRMYEYL 217
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P SH + S K +E +E+ D A
Sbjct: 218 IP-------SH----CFLPPHPSTFLAQKMVEMAEK------------------HGDMEA 248
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETV 298
Q +V++ + ++++ V + E T +ET
Sbjct: 249 FRERQAEVESYWEETDKKHIQPIIDALPEKIKPYVQAAVGSVGGEEEKATPA---NNETE 305
Query: 299 QNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEK---KRFNRI---LKH 352
E + + D+K E+ VN K ++ + F E + +R RI L
Sbjct: 306 AGEACEGRTESDTKKSDLTPDEQAQVNVAIKDIRTAYFKAKNEYRIPPERLARINAALAL 365
Query: 353 YVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
YVG+ NFHN+T + DPSARR I SF D VV + G ++L +V GQSFM+HQIRK
Sbjct: 366 YVGTKNFHNYTIQKTFRDPSARRLIKSFKISRDPVV-INGTEWLSLKVHGQSFMMHQIRK 424
Query: 411 MIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKD 464
M+ + +VR A IE + Q + I +P AP +GL L+ IF YNKK KD
Sbjct: 425 MVAMVALLVRCGADIKRIEESYQ-NSRIPIPKAPGLGLLLERPIFDGYNKKAKD 477
>gi|320033682|gb|EFW15629.1| tRNA pseudouridine synthase [Coccidioides posadasii str. Silveira]
Length = 597
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 138/426 (32%), Positives = 210/426 (49%), Gaps = 68/426 (15%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY GMQ + KTIEG++ AL +GA+S+ + +P++ + R ART
Sbjct: 113 KRKVAVLLGYSGTGYHGMQMSAKEKTIEGEIFPALVAAGAISKANAMDPKKSSFVRCART 172
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ P LV ++N+ L QIRI+G + F+ +FCD R Y YL
Sbjct: 173 DKGVHAAGNVISLKLIIEDPDLVNKVNNILSPQIRIWGIEPTNKGFSCYQFCDSRIYEYL 232
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P + S K LE +E+ IG KR +E
Sbjct: 233 IPTHCF-----------LPPHPSTFLAKKLLEAAEK-EGDIGDYKKR--------QEEVL 272
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETV 298
S V + + + T+ ES ++ V E+L S+++
Sbjct: 273 SYWEDVDHEYIRPILS---------------TLPESTRLK------VQESLCIKDRSQSI 311
Query: 299 QN----ENTDLSLDLDSKNDSK---------VMAEERSVNGEEKLLKGSGFCYGEEEK-- 343
QN E D S D++S D K +E++ +N K ++ + F + +
Sbjct: 312 QNAEGKEELDCSSDVNSVKDEKEGGNLNPGNSDSEDQKINEVIKTVRAAYFKAKKAYRIH 371
Query: 344 ----KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCE 397
R +L Y+G+ NFHN+T + D SARR I SF D ++ ++G ++L +
Sbjct: 372 PARLARVQEVLDLYIGTRNFHNYTIQKTFRDASARRVIKSFNISKDPII-IDGTEWLSLK 430
Query: 398 VVGQSFMLHQIRKMIGLAVAVVR-NCAPQSLIET-ALQKDVNINVPTAPEVGLYLDECIF 455
V GQSFM+HQIRKM+ +A VVR PQ + ++ QK I +P AP +GL L+ IF
Sbjct: 431 VHGQSFMMHQIRKMVAMAALVVRCGTDPQRITQSYGPQK---IPIPKAPGLGLLLERPIF 487
Query: 456 ASYNKK 461
+YNKK
Sbjct: 488 DTYNKK 493
>gi|327303396|ref|XP_003236390.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892]
gi|326461732|gb|EGD87185.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892]
Length = 580
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 144/420 (34%), Positives = 204/420 (48%), Gaps = 56/420 (13%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+ + Y G GY GMQ P KTIEGDL A + A+S+ + +P++ + R ART
Sbjct: 98 KKKVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCART 157
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + I+ P +V+++N L QIR++G T F+A +FCD R Y YL
Sbjct: 158 DKGVHAAGNVVSLKLIIEDPDIVQKINEKLSPQIRVWGIIPATKGFSAYQFCDSRMYEYL 217
Query: 179 LPVFAL----DSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSN 234
+P S+ + MA E K ER +V + + P
Sbjct: 218 IPSHCFLPPHPSTFLAQKMDEMAEKHGDMEAFK-----ERQAEVESYWEETDKKHIQPII 272
Query: 235 DENASLNSQVK--VDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVES 292
D +L ++K V V + G+ AN+ES E E
Sbjct: 273 D---ALPEKIKPYVQAAVGSVGGEEEKAT-----------------PANNES-GEACEER 311
Query: 293 RTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEK---KRFNRI 349
S+T + +DL+ D E+ VN K ++ + F E + +R RI
Sbjct: 312 TESDT---KKSDLTPD-----------EQAQVNVAIKDIRTAYFKAKNEYRIPPERLARI 357
Query: 350 ---LKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCEVVGQSFM 404
L YVG+ NFHN+T + DPSARR I SF D VV + G ++L +V GQSFM
Sbjct: 358 NAALALYVGTKNFHNYTIQKTFRDPSARRLIKSFKISRDPVV-INGTEWLSLKVHGQSFM 416
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKD 464
+HQIRKM+ + +VR A IE + Q + I +P AP +GL L+ IF YNKK KD
Sbjct: 417 MHQIRKMVAMVALLVRCGADIKRIEESYQ-NSRIPIPKAPGLGLLLERPIFDGYNKKAKD 475
>gi|119192942|ref|XP_001247077.1| tRNA pseudouridine synthase 1, putative [Coccidioides immitis RS]
gi|392863687|gb|EAS35543.2| tRNA pseudouridine(38-40) synthase [Coccidioides immitis RS]
Length = 597
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 137/426 (32%), Positives = 210/426 (49%), Gaps = 68/426 (15%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY GMQ + KTIEG++ AL +GA+S+ + +P++ + R ART
Sbjct: 113 KRKVAVLLGYSGTGYHGMQMSAKEKTIEGEIFPALVAAGAISKANAMDPKKSSFVRCART 172
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ P LV ++N+ L QIRI+G + F+ +FCD R Y YL
Sbjct: 173 DKGVHAAGNVISLKLIIEDPDLVNKVNNILSPQIRIWGIEPTNKGFSCYQFCDSRIYEYL 232
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P + S K LE +E+ IG KR +E
Sbjct: 233 IPTHCF-----------LPPHPSTFLAKKLLEAAEK-EGDIGDYKKR--------QEEVL 272
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETV 298
S V + + + T+ ES ++ V E+L S+++
Sbjct: 273 SYWEDVDHEYIRPILS---------------TLPESTRLK------VQESLCIKDRSQSI 311
Query: 299 QN----ENTDLSLDLDSKNDSK---------VMAEERSVNGEEKLLKGSGFCYGEEEK-- 343
QN E D S D+++ D K +E++ +N K ++ + F + +
Sbjct: 312 QNAEGKEELDCSSDINAVKDEKEGGNLTPGNSDSEDQKINEVIKTVRAAYFKAKKAYRIH 371
Query: 344 ----KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCE 397
R +L Y+G+ NFHN+T + D SARR I SF D ++ ++G ++L +
Sbjct: 372 PARLARVQEVLDLYIGTRNFHNYTIQKTFRDASARRVIKSFNISKDPII-IDGTEWLSLK 430
Query: 398 VVGQSFMLHQIRKMIGLAVAVVR-NCAPQSLIET-ALQKDVNINVPTAPEVGLYLDECIF 455
V GQSFM+HQIRKM+ +A VVR PQ + ++ QK I +P AP +GL L+ IF
Sbjct: 431 VHGQSFMMHQIRKMVAMAALVVRCGTDPQRITQSYGPQK---IPIPKAPGLGLLLERPIF 487
Query: 456 ASYNKK 461
+YNKK
Sbjct: 488 DTYNKK 493
>gi|406868239|gb|EKD21276.1| tRNA pseudouridine synthase A [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 688
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 134/459 (29%), Positives = 218/459 (47%), Gaps = 63/459 (13%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N KTIEGDL +A +GA+S+ + +P++ R ART
Sbjct: 146 KRKVAVMIGYAGSGYKGMQINGAEKTIEGDLFKAFVAAGAISKANADDPKKSSLVRCART 205
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY--- 175
DKGV A G V+S + ++ P +++++N NLP QIR++G +R +F+ + CD R Y
Sbjct: 206 DKGVHAAGNVISLKLIVEEPDIIQKINENLPPQIRVWGIERTNGAFSCYQTCDSRWYEYL 265
Query: 176 ------------------------------------------------VYLLPVFALDSS 187
Y+ P+ LD
Sbjct: 266 IPTYSFIPPHPQSFLAQKLFESAEKEDKLTEYRSLQEDAAGFWQHAEDTYVKPI--LDKL 323
Query: 188 SHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVK-V 246
R++V A++ S E V + E K+ G + G D A+ +S+ K
Sbjct: 324 DPELRDAVTAAIHSPAEEVVAPKKEES--KLAGDATAVKEEEGAMDVDVTATDSSKRKRT 381
Query: 247 DTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDLS 306
D + + TN SV++ ++E + A+S+ V + + + + T Q E+
Sbjct: 382 DQDEDSQIQKKLKTNSASVKTEDGVTEDITEPTASSDPVKQEVPIKQEAPTDQQESDSRG 441
Query: 307 LDLDSKND--SKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTT 364
D+ + + A + V K + + R L Y+G+ NFHN+T
Sbjct: 442 PTGDASKSILTPLEAAIKEVKAAYITAK-KAYRISATRRARVQEALNSYLGTCNFHNYTI 500
Query: 365 RTKAEDPSARRYIISF--GADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNC 422
+ DPSA+R I SF G + ++ + ++L +V GQSFM+HQIRKM+ + VVR
Sbjct: 501 QKTFSDPSAKRVIRSFKVGPEPII-INDTEWLSLKVHGQSFMMHQIRKMVAMVALVVRCG 559
Query: 423 APQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
+P S+I+ + NI++P AP +GL L+ +F SYN+K
Sbjct: 560 SPLSIIQESYGPQ-NISIPKAPGLGLLLERPVFDSYNEK 597
>gi|303312455|ref|XP_003066239.1| tRNA pseudouridine synthase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240105901|gb|EER24094.1| tRNA pseudouridine synthase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 597
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/426 (32%), Positives = 210/426 (49%), Gaps = 68/426 (15%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY GMQ + KTIEG++ AL +GA+S+ + +P++ + R ART
Sbjct: 113 KRKVAVLLGYSGTGYHGMQMSAKEKTIEGEIFPALVAAGAISKANAMDPKKSSFVRCART 172
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ P LV ++N+ L QIRI+G + F+ +FCD R Y YL
Sbjct: 173 DKGVHAAGNVISLKLIIEDPDLVNKVNNILSPQIRIWGIEPTNKGFSCYQFCDSRIYEYL 232
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P + S K LE +E+ IG KR +E
Sbjct: 233 IPTHCF-----------LPPHPSTFLAKKLLEAAEK-EGDIGDYKKR--------QEEVL 272
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETV 298
S V + + + T+ ES ++ V E+L S+++
Sbjct: 273 SYWEDVDHEYIRPILS---------------TLPESTRLK------VQESLCIKDRSQSI 311
Query: 299 QN----ENTDLSLDLDSKNDSK---------VMAEERSVNGEEKLLKGSGFCYGEEEK-- 343
QN E D S D+++ D K +E++ +N K ++ + F + +
Sbjct: 312 QNAEGKEELDCSSDVNAVKDEKEGGNLNPGNSDSEDQKINEVIKTVRAAYFKAKKAYRIH 371
Query: 344 ----KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCE 397
R +L Y+G+ NFHN+T + D SARR I SF D ++ ++G ++L +
Sbjct: 372 PARLARVQEVLDLYIGTRNFHNYTIQKTFRDASARRVIKSFNISKDPII-IDGTEWLSLK 430
Query: 398 VVGQSFMLHQIRKMIGLAVAVVR-NCAPQSLIET-ALQKDVNINVPTAPEVGLYLDECIF 455
V GQSFM+HQIRKM+ +A VVR PQ + ++ QK I +P AP +GL L+ IF
Sbjct: 431 VHGQSFMMHQIRKMVAMAALVVRCGTDPQRITQSYGPQK---IPIPKAPGLGLLLERPIF 487
Query: 456 ASYNKK 461
+YNKK
Sbjct: 488 DTYNKK 493
>gi|255935685|ref|XP_002558869.1| Pc13g04330 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583489|emb|CAP91502.1| Pc13g04330 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 548
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 202/411 (49%), Gaps = 69/411 (16%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY GMQ N +TIEGDL AL + GAVS+ + +P++ + R ART
Sbjct: 82 KKKVALLMGYSGTGYSGMQLNEQQRTIEGDLFTALVNVGAVSKANAADPKKSSFVRCART 141
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + ++ +++++N+ L QIR++GY+ + SF+ + CD R Y YL
Sbjct: 142 DKGVHAAGNVVSLKMIVEDEDIIQKINAELSPQIRVWGYEVTSKSFSCYQMCDSRVYEYL 201
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P SH CL +GK+ +L + + +A
Sbjct: 202 MP-------SH------------------CLVPPHPST----YLGKKIVELADKAGELDA 232
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETV 298
Q +V + + K I+E E A E+ + + E
Sbjct: 233 VKTRQEEVASYWEEVD-------------EKYITE----EPAQQETSEQPVAEQ------ 269
Query: 299 QNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRI------LKH 352
S D +++ + ++++N K +K + + +RI L
Sbjct: 270 -------SADAEAQKPFVMDPRQKAINDAIKSIKAAYLTAKRAYRAPASRIARLQECLNR 322
Query: 353 YVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVGQSFMLHQIRKM 411
Y G+ NFHN+T + +DPSA+R+I SF ++ + + G ++L +V GQSFM+HQIRKM
Sbjct: 323 YEGTKNFHNYTIQKTHKDPSAKRHIKSFKVNTTPIIINGTEWLSLKVHGQSFMMHQIRKM 382
Query: 412 IGLAVAVVRN-CAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
+ +A VVR+ C P + ET + I +P AP +GL L+ IF +YN K
Sbjct: 383 VAMATMVVRSGCHPDRITETYGPE--RIAIPKAPGLGLLLERPIFDAYNNK 431
>gi|121698285|ref|XP_001267772.1| tRNA pseudouridine synthase, putative [Aspergillus clavatus NRRL 1]
gi|119395914|gb|EAW06346.1| tRNA pseudouridine synthase, putative [Aspergillus clavatus NRRL 1]
Length = 568
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 200/410 (48%), Gaps = 42/410 (10%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY GMQ + KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 78 KKKVAVLIGYAGTGYHGMQLSDKEKTIEGDLFAAFVAAGAISKANAADPKKSSLVRCART 137
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + ++ P +V+++N L QIR++ + F+ + CD R Y YL
Sbjct: 138 DKGVHAAGNVVSLKLIVEDPDIVKKINEQLCPQIRVWDVQVTNKGFSCYQMCDSRVYEYL 197
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P + + + GRK++ + K GL + E
Sbjct: 198 IPSYC---------------------FLPPHPSTYLGRKIVELAEKEGDLEGLKARQE-- 234
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESN--KTISESVMVEN---ANSESVNETLVESR 293
+V T + + +R LES+ + K + +++ + A SES ++ +
Sbjct: 235 ------EVATYWNDIDNERIKPILESLPDDIRKLVEKALYFDEEKAAESESADQKEEPQQ 288
Query: 294 TSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHY 353
TS TD + + + + + ++ E K + R L Y
Sbjct: 289 TSGQTATAETDAEEEARRRRIYEAVKQVKTAYTEAK----RAYRIPSIRLDRLQATLDKY 344
Query: 354 VGSHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKCEVVGQSFMLHQIRKMI 412
+G++NF+N+T + DPSA+RYI +F D + + + G ++L +V GQSFM+HQIRKM+
Sbjct: 345 IGTNNFYNYTIQKTHGDPSAKRYIKTFQVDRNSILINGTEWLSLKVHGQSFMMHQIRKMV 404
Query: 413 GLAVAVVRNCA-PQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
+A +VR P ++E+ I VP AP +GL L+ IF YNKK
Sbjct: 405 AMATMLVRAGGDPARIVES--YGPTKIAVPKAPGLGLLLERPIFDGYNKK 452
>gi|315050550|ref|XP_003174649.1| tRNA pseudouridine synthase 1 [Arthroderma gypseum CBS 118893]
gi|311339964|gb|EFQ99166.1| tRNA pseudouridine synthase 1 [Arthroderma gypseum CBS 118893]
Length = 582
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 137/411 (33%), Positives = 200/411 (48%), Gaps = 43/411 (10%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+ + Y G GY GMQ P KTIEGDL A + A+S+ + +P++ + R ART
Sbjct: 99 KKKVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCART 158
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + I+ P +V+++N L QIR++G T F+A +FCD R Y YL
Sbjct: 159 DKGVHAAGNVVSLKLIIEDPDVVQKINEKLNPQIRVWGIIPATKGFSAYQFCDSRMYEYL 218
Query: 179 LPVFAL----DSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSN 234
+P S+ + MA E K ER +V + + P
Sbjct: 219 IPSHCFLPPHPSTFLAQKMVEMAEKHGDMEAFK-----ERQAEVESYWEETDKKHIQPII 273
Query: 235 DENASLNSQVK--VDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVES 292
D +L ++K V V + G E +KT S S A E+V ET ++
Sbjct: 274 D---ALPEKIKPYVQAAVGSVGG----------EEDKTTSSSNEDGEAGQENVGET--DA 318
Query: 293 RTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKH 352
+ S+ +E +++ + + A+ E+L R N L
Sbjct: 319 KKSDLTPDEQAQVNVAIKDIRTAYFEAKNEYRIPPERLA-------------RINAALAL 365
Query: 353 YVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
YVG+ NFHN+T + D SARR I SF D VV + G ++L +V GQSFM+HQIRK
Sbjct: 366 YVGTKNFHNYTIQKTFRDASARRLIKSFKISRDPVV-INGTEWLSLKVHGQSFMMHQIRK 424
Query: 411 MIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
M+ + +VR A + I + Q + I +P AP +GL L+ IF YNKK
Sbjct: 425 MVAMVALLVRCGADINRINESYQ-NSRIPIPKAPGLGLLLERPIFDGYNKK 474
>gi|119480651|ref|XP_001260354.1| tRNA pseudouridine synthase, putative [Neosartorya fischeri NRRL
181]
gi|119408508|gb|EAW18457.1| tRNA pseudouridine synthase, putative [Neosartorya fischeri NRRL
181]
Length = 577
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 122/417 (29%), Positives = 203/417 (48%), Gaps = 45/417 (10%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY GMQ + KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 78 KKKVAVLIGYAGTGYHGMQLSDKEKTIEGDLFTAFVAAGAISKANAADPKKSSLVRCART 137
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + ++ P L++++N L QIR++ + F+ + CD R Y YL
Sbjct: 138 DKGVHAAGNVVSLKLIVEDPDLIKKINEKLCPQIRVWDIQVTNKGFSCYQMCDSRVYEYL 197
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P + + + GRK++ +L D A
Sbjct: 198 IPSYC---------------------FLPPHPSTYLGRKIV--------ELAEKEGDLEA 228
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESN--KTISESVMVENANSESVNETLVESRTSE 296
Q +V T + +R L++ + K + +++ + + + + + +
Sbjct: 229 YKARQEEVATYWEDVDNERIKPILDTFPEDLRKLVEKALYFDEERAPEDEDAAQKEESQQ 288
Query: 297 TVQNENTDLSLDLDSKNDSKVMAEERSVNGE-EKLLKGSGFCYGEEEK------KRFNRI 349
T N S + ++ AEE + + +K Y E ++ R +R+
Sbjct: 289 TSSEANPADSEQTTQEQTTEASAEEEARRRRIYEAVKKVKTAYTEAKRAYRIPAARLDRL 348
Query: 350 ---LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKCEVVGQSFML 405
L YVG++NF+N+T + DPSA+R+I SF D + + + G ++L +V GQSFM+
Sbjct: 349 QATLDKYVGTNNFYNYTIQKTYTDPSAKRFIKSFKVDRNPIIINGTEWLSLKVHGQSFMM 408
Query: 406 HQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
HQIRKM+ +A +VR C PQ ++++ I +P AP +GL L+ IF YNKK
Sbjct: 409 HQIRKMVAMATMLVRAGCDPQRIVDS--YGPTKIAIPKAPGLGLLLERPIFDGYNKK 463
>gi|71000998|ref|XP_755180.1| tRNA pseudouridine synthase [Aspergillus fumigatus Af293]
gi|66852818|gb|EAL93142.1| tRNA pseudouridine synthase, putative [Aspergillus fumigatus Af293]
gi|159129271|gb|EDP54385.1| tRNA pseudouridine synthase, putative [Aspergillus fumigatus A1163]
Length = 577
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 202/422 (47%), Gaps = 55/422 (13%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY GMQ + KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 78 KKKVAVLIGYAGTGYHGMQLSDKEKTIEGDLFTAFVAAGAISKANAADPKKSSLVRCART 137
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + I+ P L++++N L QIR++ + F+ + CD R Y YL
Sbjct: 138 DKGVHAAGNVVSLKLIIEDPDLIKKINEKLCPQIRVWDIQVTNKGFSCYQMCDSRVYEYL 197
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P + + + GRK++ +L D A
Sbjct: 198 IPSYC---------------------FLPPHPSTYLGRKIV--------ELAEKEGDLEA 228
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESN--KTISESVMVENANSESVNETLVESRTSE 296
Q +V T + +R L++ + K + +++ + + + + +
Sbjct: 229 YRARQEEVATYWEDVDNERIKPILDTFPEDLRKLVEKALYFDEERAPEDEDATQKKEPQQ 288
Query: 297 TVQNENTDLSLDLDSKNDSKVMAEERSVNGEEK------LLKGSGFCYGEEEK------K 344
T N DS+ ++ E S E + +K Y E ++
Sbjct: 289 TSSKANP-----ADSEQTAQEQTTEASTEDEARRQRIYEAVKKVKSAYTEAKRAYRIPVA 343
Query: 345 RFNRI---LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKCEVVG 400
R +R+ L YVG++NF+N+T + DPSA+R+I SF D + + + G ++L +V G
Sbjct: 344 RLDRLQATLDKYVGTNNFYNYTIQKTYTDPSAKRFIKSFKVDRNPIIINGTEWLSLKVHG 403
Query: 401 QSFMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
QSFM+HQIRKM+ +A +VR C PQ ++++ I +P AP +GL L+ IF YN
Sbjct: 404 QSFMMHQIRKMVAMATMLVRAGCDPQRIVDS--YGPTKIAIPKAPGLGLLLERPIFDGYN 461
Query: 460 KK 461
K+
Sbjct: 462 KR 463
>gi|367049226|ref|XP_003654992.1| hypothetical protein THITE_2118253 [Thielavia terrestris NRRL 8126]
gi|347002256|gb|AEO68656.1| hypothetical protein THITE_2118253 [Thielavia terrestris NRRL 8126]
Length = 569
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 137/420 (32%), Positives = 202/420 (48%), Gaps = 35/420 (8%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY G+Q N KTIEGD+ A +GA+S+ + +P++ R ART
Sbjct: 71 KRKVAVLIGYAGTGYHGIQINHKEKTIEGDIFAAFVAAGAISKANADDPKKSSLVRCART 130
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + ++ +V+R+N +LP QIR++G +R F+ + CD R Y YL
Sbjct: 131 DKGVHAAGNVLSLKLIVEDEDVVDRINQHLPEQIRVWGIQRTNNGFSCYQACDSRWYEYL 190
Query: 179 LPVFA-LDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGV---MGKRTYQLGLPSN 234
+P +A L H +A S E E + R V G + KR + L
Sbjct: 191 MPSYALLPPQPHSFLGKKLAE--SAREKGVAAEYTSRLDDVAGFWEEVEKRDIRPILEKL 248
Query: 235 DENASLNSQVKV----DTVVSTCNGDRHNTNLESVESNKTISESV----MVENANSESVN 286
D K+ D ++ G + E SE ENA S +
Sbjct: 249 DPEVRAEVLRKLHDTADQELTDEEGMPMRPDAEVAAPTTAPSEDTAPQSTAENAASPAPP 308
Query: 287 ETLVESRTSET--VQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKK 344
E S ++ + E T L L L + V A+ R ++ +
Sbjct: 309 EGASASASAPQPKAERELTPLELALREVKAAYVAAKRRYRVTPPRI-------------E 355
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEG-IDFLKCEVVGQSF 403
R + L YVG+ N+HN+T D SA+R+I SF + V G ++L +V GQSF
Sbjct: 356 RLQQALDLYVGTRNYHNYTVLKSYGDASAKRHIKSFRVNPAPIVIGDTEWLSLKVHGQSF 415
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQK--DVNINVPTAPEVGLYLDECIFASYNKK 461
M+HQIRKM+ +AV VVR AP ++T LQ I++P AP +GL L+ +F YNK+
Sbjct: 416 MMHQIRKMVAMAVMVVRCGAP---LDTILQSYGPRRISIPKAPGLGLMLERPMFTEYNKR 472
>gi|358392098|gb|EHK41502.1| hypothetical protein TRIATDRAFT_228328 [Trichoderma atroviride IMI
206040]
Length = 566
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 132/427 (30%), Positives = 213/427 (49%), Gaps = 54/427 (12%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N +TIE DL +A +GA+S+ + +PR+ AR ART
Sbjct: 74 KRKVAVMIGYAGTGYKGMQLNGDEETIERDLFQAFVKAGAISKANADDPRKSSLARCART 133
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ +V+++N LP QIR++G +R S+N ++CD R Y YL
Sbjct: 134 DKGVHAAGNVISLKLIIEDEDIVDKINEALPPQIRVWGIQRTNNSYNCYQYCDSRWYEYL 193
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P + L+ S G+K++ V + Y +N A
Sbjct: 194 MPSYC---------------------LLPPHPQSFLGKKLVEV--NKEYGAEEETNARLA 230
Query: 239 SLN---SQVK---VDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVES 292
+ S+V+ + +++ + + LES+ S + E+ E+ +ES + VE
Sbjct: 231 DVKDWWSEVEEKDIKPILAGLDEETRAAVLESLHSEQAPEENAD-ESKKAEST-QPAVEQ 288
Query: 293 RTSETVQ----NENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCY---------G 339
+SE + NE + + + V + R + + L+ Y
Sbjct: 289 PSSENAEPATTNEGDNATPQRPAVVLETVQPKRRELGPVDFALRDIKAAYIGAKRAYRVS 348
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGI-----DFL 394
E +R L YVG++NFHN+T + DPS++R+I SF VVN + I ++L
Sbjct: 349 PERIQRLQEALNQYVGTNNFHNYTVQKSHGDPSSKRHIRSF----VVNPKPIIIGDTEWL 404
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454
+V GQSFM+HQIRKM+GLA +VR I+ + + +P P +GL L+ +
Sbjct: 405 SLKVHGQSFMMHQIRKMVGLATLMVRCGTTLDRIKESYGPQ-KMAIPKMPGLGLLLERPV 463
Query: 455 FASYNKK 461
F +YNK+
Sbjct: 464 FENYNKR 470
>gi|239606367|gb|EEQ83354.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis ER-3]
Length = 596
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 136/427 (31%), Positives = 206/427 (48%), Gaps = 63/427 (14%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY+GMQ +P KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 120 KKKVAVMLGYSGSGYKGMQLSPTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCART 179
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + ++ +V+++N L QIR++G + SF++ CD R Y YL
Sbjct: 180 DKGVHAAGNVVSLKLIVEDSDIVQKINEQLSPQIRVWGIEITNKSFSSYHLCDSRIYEYL 239
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLE------------------CSERGRKVIG 220
+P S G +LV+ E E K I
Sbjct: 240 IPTHCFLPPH--------PSTSLGQKLVEIAEQENDLEGYKQRQAEVATYWKEVDEKYIQ 291
Query: 221 VMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENA 280
+ +R LP N +VK +V + G ++S +S + E
Sbjct: 292 PILER-----LPEVTRN-----RVKRALIVKSDTGP-----VDSSDSQGEQKLNPSNEGD 336
Query: 281 NSESVNETLVESRTSETVQNENTDLSLD---LDSKNDSKVMAEERSVNGEEKLLKGSGFC 337
++ + NET +++ NEN D S + + ND+ M ++ + +
Sbjct: 337 DAPTSNETSIQT-------NENKDTSAEDAQTVTTNDAIRMIRAAYLDAKR------AYR 383
Query: 338 YGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLK 395
+E R N L YVG+ NFHN+T + D SA+R I SF D ++ + G ++L
Sbjct: 384 IPKERMDRINDALGMYVGTRNFHNYTIQKSFRDASAKRLIKSFKISRDPLI-INGTEWLS 442
Query: 396 CEVVGQSFMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454
+V GQSFM+HQIRKM+ + VVR C Q + ET +D I +P AP +GL L+ I
Sbjct: 443 LKVHGQSFMMHQIRKMVAMVALVVRCGCDIQRIPETY--EDHKIAIPKAPGLGLLLERPI 500
Query: 455 FASYNKK 461
F SYNK+
Sbjct: 501 FDSYNKR 507
>gi|327353057|gb|EGE81914.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis ATCC 18188]
Length = 610
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 136/427 (31%), Positives = 206/427 (48%), Gaps = 63/427 (14%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY+GMQ +P KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 120 KKKVAVMLGYSGSGYKGMQLSPTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCART 179
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + ++ +V+++N L QIR++G + SF++ CD R Y YL
Sbjct: 180 DKGVHAAGNVVSLKLIVEDSDIVQKINEQLSPQIRVWGIEITNKSFSSYHLCDSRIYEYL 239
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLE------------------CSERGRKVIG 220
+P S G +LV+ E E K I
Sbjct: 240 IPTHCFLPPH--------PSTSLGQKLVEIAEQENDLEGYKQRQAEVATYWKEVDEKYIQ 291
Query: 221 VMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENA 280
+ +R LP N +VK +V + G ++S +S + E
Sbjct: 292 PILER-----LPEVTRN-----RVKRALIVKSDTGP-----VDSSDSQGEQKLNPSNEGD 336
Query: 281 NSESVNETLVESRTSETVQNENTDLSLD---LDSKNDSKVMAEERSVNGEEKLLKGSGFC 337
++ + NET +++ NEN D S + + ND+ M ++ + +
Sbjct: 337 DAPTSNETSIQT-------NENKDTSAEDAQTVTTNDAIRMIRAAYLDAKR------AYR 383
Query: 338 YGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLK 395
+E R N L YVG+ NFHN+T + D SA+R I SF D ++ + G ++L
Sbjct: 384 IPKERMDRINDALGMYVGTRNFHNYTIQKSFRDASAKRLIKSFKISRDPLI-INGTEWLS 442
Query: 396 CEVVGQSFMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454
+V GQSFM+HQIRKM+ + VVR C Q + ET +D I +P AP +GL L+ I
Sbjct: 443 LKVHGQSFMMHQIRKMVAMVALVVRCGCDIQRIPETY--EDHKIAIPKAPGLGLLLERPI 500
Query: 455 FASYNKK 461
F SYNK+
Sbjct: 501 FDSYNKR 507
>gi|240282351|gb|EER45854.1| tRNA pseudouridine synthase [Ajellomyces capsulatus H143]
Length = 612
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 141/480 (29%), Positives = 224/480 (46%), Gaps = 80/480 (16%)
Query: 19 RQEPDPKRLKMSATSTS-----DDERDLIPAAAGADSTTKRQLCKRR---KIAIFFAYCG 70
RQ PD KR + A+ S ++ ++P A S + +RR K+A+ Y G
Sbjct: 73 RQIPD-KRARAEASQESKRRKLENGEKVLPIYATEFSKEDIEADQRRPKKKVAVMLGYSG 131
Query: 71 VGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS 130
GY+GMQ + KTIEGDL A +GA+S+ + +P++ R ARTDKGV A G VVS
Sbjct: 132 SGYKGMQLSETEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTDKGVHAAGNVVS 191
Query: 131 GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP---VFALDSS 187
+ ++ P +V+++N +L QIR++G + SF++ CD R Y YL+P S
Sbjct: 192 LKLIVEDPNVVQKINGHLSPQIRVWGIEITNKSFSSYHLCDSRIYEYLIPSHCFLPPHPS 251
Query: 188 SHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVD 247
+H +G++ ++ ND QV+V
Sbjct: 252 TH--------------------------------LGQQLVEIAEQENDLEGYQQRQVEVA 279
Query: 248 TVVSTCNGDRHNTNLESVE--SNKTISESVMV-------ENANSESVNETL--------- 289
+ LE + + + +++++ +N+ S+ + L
Sbjct: 280 HYWEEVDEKYIKPILERLPEVTRNRVKQALIIKSGTDPADNSTSQGEQDQLDPSDEQDGE 339
Query: 290 VESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGS------GFCYGEEEK 343
V S+ + T NEN DLS S + N ++++ + + E
Sbjct: 340 VTSKEASTSTNENKDLS--------SGGAQAVHTTNEAIRIIRAAYLDAKKAYRIPRERM 391
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFG-ADSVVNVEGIDFLKCEVVGQS 402
R N L YVG+ NFHN+T + D SA+R+I SF + + + G ++L +V GQS
Sbjct: 392 DRINDALGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLIINGTEWLSLKVHGQS 451
Query: 403 FMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FM+HQIRKM+ +A +VR C + + ET D I +P AP +GL L+ IF SYNK+
Sbjct: 452 FMMHQIRKMVAMAALIVRCGCDIKLVPETY--GDQKIAIPKAPGLGLLLERPIFDSYNKR 509
>gi|169783932|ref|XP_001826428.1| tRNA pseudouridine synthase [Aspergillus oryzae RIB40]
gi|83775172|dbj|BAE65295.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 563
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 202/408 (49%), Gaps = 38/408 (9%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY+GMQ + KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 78 KKKVAVLLGYSGTGYKGMQLSATEKTIEGDLFAAFVAAGAISKANAADPKKSSLVRCART 137
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + ++ +V+++N++L QIR++G + SF++ + CD R Y YL
Sbjct: 138 DKGVHAAGNVVSLKLIVEDEDIVQKINAHLSPQIRVWGILVASKSFSSYQMCDSRIYEYL 197
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P + C +GK+ ++ D A
Sbjct: 198 MPSY-------------------------CFLPPHPST----FLGKKIIEIAEKEGDLEA 228
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESN--KTISESVMVENANSESVNETLVESRTSE 296
Q +V + L++++ + + + ++ E ES T +S+ +E
Sbjct: 229 HKARQAEVANYWEEADAKYIQPVLDTLDEDIREVVKNAIYHEKPEDESFG-TEEQSQATE 287
Query: 297 TVQNENTDLSL-DLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVG 355
+ T L + + + K++ ++V K S + R L Y+G
Sbjct: 288 GGADAATKPELTEAELAHRRKIIDAVKAVKAAYNTAKRS-YRIPPARVARLQEALDKYLG 346
Query: 356 SHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKCEVVGQSFMLHQIRKMIGL 414
+ NF+N+T + +DPSA+R+I SF D + + + G ++L +V GQSFM+HQIRKM+ +
Sbjct: 347 TKNFYNYTIQKLYKDPSAKRHIKSFKVDPNPIIINGTEWLSLKVHGQSFMMHQIRKMVAM 406
Query: 415 AVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
A +VR C P+ ++++ I +P AP +GL L+ IF Y+KK
Sbjct: 407 ATLIVRCGCDPKRIVDS--YGPTKIPIPKAPGLGLLLERPIFNGYSKK 452
>gi|238493757|ref|XP_002378115.1| tRNA pseudouridine synthase, putative [Aspergillus flavus NRRL3357]
gi|317157361|ref|XP_003190833.1| tRNA pseudouridine synthase [Aspergillus oryzae RIB40]
gi|220696609|gb|EED52951.1| tRNA pseudouridine synthase, putative [Aspergillus flavus NRRL3357]
Length = 601
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 202/408 (49%), Gaps = 38/408 (9%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY+GMQ + KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 116 KKKVAVLLGYSGTGYKGMQLSATEKTIEGDLFAAFVAAGAISKANAADPKKSSLVRCART 175
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + ++ +V+++N++L QIR++G + SF++ + CD R Y YL
Sbjct: 176 DKGVHAAGNVVSLKLIVEDEDIVQKINAHLSPQIRVWGILVASKSFSSYQMCDSRIYEYL 235
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P + C +GK+ ++ D A
Sbjct: 236 MPSY-------------------------CFLPPHPST----FLGKKIIEIAEKEGDLEA 266
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESN--KTISESVMVENANSESVNETLVESRTSE 296
Q +V + L++++ + + + ++ E ES T +S+ +E
Sbjct: 267 HKARQAEVANYWEEADAKYIQPVLDTLDEDIREVVKNAIYHEKPEDESFG-TEEQSQATE 325
Query: 297 TVQNENTDLSL-DLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVG 355
+ T L + + + K++ ++V K S + R L Y+G
Sbjct: 326 GGADAATKPELTEAELAHRRKIIDAVKAVKAAYNTAKRS-YRIPPARVARLQEALDKYLG 384
Query: 356 SHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKCEVVGQSFMLHQIRKMIGL 414
+ NF+N+T + +DPSA+R+I SF D + + + G ++L +V GQSFM+HQIRKM+ +
Sbjct: 385 TKNFYNYTIQKLYKDPSAKRHIKSFKVDPNPIIINGTEWLSLKVHGQSFMMHQIRKMVAM 444
Query: 415 AVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
A +VR C P+ ++++ I +P AP +GL L+ IF Y+KK
Sbjct: 445 ATLIVRCGCDPKRIVDS--YGPTKIPIPKAPGLGLLLERPIFNGYSKK 490
>gi|391869504|gb|EIT78701.1| pseudouridylate synthase [Aspergillus oryzae 3.042]
Length = 563
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 202/408 (49%), Gaps = 38/408 (9%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY+GMQ + KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 78 KKKVAVLLGYSGTGYKGMQLSATEKTIEGDLFAAFVAAGAISKANAADPKKSSLVRCART 137
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + ++ +V+++N++L QIR++G + SF++ + CD R Y YL
Sbjct: 138 DKGVHAAGNVVSLKLIVEDEDIVQKINAHLSPQIRVWGILVASKSFSSYQMCDSRIYEYL 197
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P + C +GK+ ++ D A
Sbjct: 198 MPSY-------------------------CFLPPHPST----FLGKKIIEIAEKEGDLEA 228
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESN--KTISESVMVENANSESVNETLVESRTSE 296
Q +V + L++++ + + + ++ E ES T +S+ +E
Sbjct: 229 HKARQAEVANYWEEADAKYIQPVLDTLDEDIREVVKNAIYHEKPEDESFG-TEEQSQATE 287
Query: 297 TVQNENTDLSL-DLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVG 355
+ T L + + + K++ ++V K S + R L Y+G
Sbjct: 288 GGADAATKPELTEAELAHRRKIIDAVKAVKAAYNTAKRS-YRIPPARVARLQEALDKYLG 346
Query: 356 SHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKCEVVGQSFMLHQIRKMIGL 414
+ NF+N+T + +DPSA+R+I SF D + + + G ++L +V GQSFM+HQIRKM+ +
Sbjct: 347 TKNFYNYTIQKLYKDPSAKRHIKSFKVDPNPIIINGTEWLSLKVHGQSFMMHQIRKMVAM 406
Query: 415 AVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
A +VR C P+ ++++ I +P AP +GL L+ IF Y+KK
Sbjct: 407 ATLIVRCGCDPKRIVDS--YGPTKIPIPKAPGLGLLLERPIFNGYSKK 452
>gi|358377645|gb|EHK15328.1| hypothetical protein TRIVIDRAFT_13584, partial [Trichoderma virens
Gv29-8]
Length = 505
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 207/412 (50%), Gaps = 29/412 (7%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N +TIE DL +A +GA+S+ + +PR+ AR ART
Sbjct: 58 KRKVAVMIGYAGTGYKGMQLNGDEETIERDLFQAFIKAGAISKANADDPRKSSLARCART 117
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ +V+++N LP QIR++G +R S+N ++CD R Y YL
Sbjct: 118 DKGVHAAGNVISLKLIIEEDDIVDKINEALPAQIRVWGIQRTNNSYNCYQYCDSRWYEYL 177
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P + L +S + G +LV+ K G + + +L N
Sbjct: 178 MPSYCLLPPHP---QSFL-----GKKLVEI-------NKEYGAEEETSARLADVKNFWEE 222
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETV 298
++K +++ + + LES+ S + +E+ E +++ + ET
Sbjct: 223 VDEKEIK--PILARLDPETRAAVLESLHSEQAAAEAETDETNKADNEEAAEPAAAQQETA 280
Query: 299 QNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHN 358
+ E+ D ++ + V R + K + E +R L Y G++N
Sbjct: 281 K-EDGDYTVQPKRRELGPVDFALRDIKAAYIGAK-RAYRVSPERIQRLQEALNKYEGTNN 338
Query: 359 FHNFTTRTKAEDPSARRYIISFGADSVVNVEGI-----DFLKCEVVGQSFMLHQIRKMIG 413
FHN+T + DPS++R+I SF VVN + I ++L +V GQSFM+HQIRKM+G
Sbjct: 339 FHNYTVQKSHGDPSSKRHIRSF----VVNPKPIIIGDTEWLSLKVHGQSFMMHQIRKMVG 394
Query: 414 LAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDS 465
L +VR C T + +P P +GL L+ +F +YNK+ K++
Sbjct: 395 LVTLMVR-CGTSLDRITESYGPKKMAIPKMPGLGLLLERPVFENYNKRAKET 445
>gi|116208668|ref|XP_001230143.1| hypothetical protein CHGG_03627 [Chaetomium globosum CBS 148.51]
gi|88184224|gb|EAQ91692.1| hypothetical protein CHGG_03627 [Chaetomium globosum CBS 148.51]
Length = 584
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 125/415 (30%), Positives = 201/415 (48%), Gaps = 45/415 (10%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY G+Q N KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 107 KRKVAVLIGYAGTGYHGIQINHKEKTIEGDLFSAFVAAGAISKANADDPKKSSLVRCART 166
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + ++ +V ++N +LP QIRI+G R + F+A + C+ R Y YL
Sbjct: 167 DKGVHAAGNVLSLKLIVEDEDIVTKINEHLPEQIRIWGIHRTSNGFSAYQACESRWYEYL 226
Query: 179 LPVFA-LDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDEN 237
+P ++ L H + L K + S + + GV + +LG +
Sbjct: 227 MPSYSLLPPQPH-------------SFLGKRIAASAKEQ---GVYDEYMERLG-----DV 265
Query: 238 ASLNSQVKVDTVVSTCNGDRHNTNLESVES-NKTISESVMVENANSESVNETLVESRTSE 296
+V+ + + G + E + T + + E ++ E + + +
Sbjct: 266 KDFWDEVEKNDIEPIFEGLDADVKAEVLRKLYDTQDQDLTDEGTPTQPDPEVVSKDAEMK 325
Query: 297 TVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKK---------RFN 347
VQ E+T KV ER + E L+ Y +++ +
Sbjct: 326 DVQEEDT-----------PKVFKPERDLTPAELALRQVKAAYVAAKRRYRATPARIEKLQ 374
Query: 348 RILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVGQSFMLH 406
+ L Y+G+ N+HN+T +D SA R+I SF ++ + + ++L V GQSFM+H
Sbjct: 375 QALNSYLGTRNYHNYTVMKSHKDASAMRHIKSFQVNTTPITIGDTEWLSLMVHGQSFMMH 434
Query: 407 QIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
QIRKM+ +AV VVR AP S I + I++P AP +GL L+ +F YN K
Sbjct: 435 QIRKMVAMAVMVVRCGAPLSTISESYGPR-RISIPKAPGLGLMLERPMFTGYNSK 488
>gi|350636807|gb|EHA25165.1| hypothetical protein ASPNIDRAFT_186794 [Aspergillus niger ATCC
1015]
Length = 538
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 204/420 (48%), Gaps = 44/420 (10%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY+GMQ + KTIEG+L A +GA+S+ + +P++ R ART
Sbjct: 47 KKKVAVLLGYSGTGYKGMQLSETEKTIEGELFAAFVAAGAISKANATDPKKSSLVRCART 106
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G +VS + ++ +++++N L +QIR++ SF++ + CD R Y YL
Sbjct: 107 DKGVHAAGNIVSLKLIVEDDDIIQKINEKLSSQIRVWDILVTNKSFSSYQLCDSRIYEYL 166
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P + S K E +E+ + G ++ +E A
Sbjct: 167 IPTHCF-----------LPPHPSTYLGKKLFEYAEKEGDLEGYKARQ---------EEVA 206
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESR---TS 295
S + V + + E + + E V+ N +S + + +++ S
Sbjct: 207 SYWEETDEKYVRPILDN--------TPEDIRKLVEKVLHLNDEDQSAQDDMFQTQDKPAS 258
Query: 296 ETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGS------GFCYGEEEKKRFNRI 349
E + + D++ D A R + K +K + + + R
Sbjct: 259 EETTEQPSSEGKPADAEKDEAEEARRRKIFETVKAIKAAYLQAKRAYRIPAQRLARVQEA 318
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISFG-ADSVVNVEGIDFLKCEVVGQSFMLHQI 408
L YVG++NF N+T + DPS++R+I SF A+ + + G ++L +V GQSFM+HQI
Sbjct: 319 LDKYVGTNNFFNYTIQKTHADPSSKRHIKSFKMAEQPIIINGTEWLSLKVHGQSFMMHQI 378
Query: 409 RKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHE 467
RKM+ +A VVR C PQ ++ET I +P AP +GL L+ +F SYN+K +HE
Sbjct: 379 RKMVAMAAMVVRCGCDPQRIVETYGAN--KIAIPKAPGLGLLLERPVFDSYNRK---THE 433
>gi|325088485|gb|EGC41795.1| tRNA pseudouridine synthase [Ajellomyces capsulatus H88]
Length = 612
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 140/480 (29%), Positives = 223/480 (46%), Gaps = 80/480 (16%)
Query: 19 RQEPDPKRLKMSATSTS-----DDERDLIPAAAGADSTTKRQLCKRR---KIAIFFAYCG 70
RQ PD KR + A+ S ++ ++P A S + +RR K+A+ Y G
Sbjct: 73 RQIPD-KRARAEASQESKRRKLENGEKVLPIYATEFSKEDIEADQRRPKKKVAVMLGYSG 131
Query: 71 VGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS 130
GY+GMQ + KTIEGDL A +GA+S+ + +P++ R ARTDKGV A G VVS
Sbjct: 132 SGYKGMQLSETEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTDKGVHAAGNVVS 191
Query: 131 GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP---VFALDSS 187
+ ++ P +V+++N +L QIR++G + SF++ CD R Y YL+P S
Sbjct: 192 LKLIVEDPNVVQKINGHLSPQIRVWGIEITNKSFSSYHLCDSRIYEYLIPSHCFLPPHPS 251
Query: 188 SHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVD 247
+H +G++ ++ ND Q +V
Sbjct: 252 TH--------------------------------LGQQLVEIAEQENDLEGYQQRQAEVA 279
Query: 248 TVVSTCNGDRHNTNLESVE--SNKTISESVMV-------ENANSESVNETL--------- 289
+ LE + + + +++++ +N+ S+ + L
Sbjct: 280 HYWEEVDEKYIKPILERLPEVTRNRVKQALIIKSGTDPADNSTSQGEQDQLDPSDEQDGE 339
Query: 290 VESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGS------GFCYGEEEK 343
V S+ + T NEN DLS S + N ++++ + + E
Sbjct: 340 VTSKEASTSTNENKDLS--------SGGAQAVHTTNEAIRIIRAAYLDAKKAYRIPRERM 391
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFG-ADSVVNVEGIDFLKCEVVGQS 402
R N L YVG+ NFHN+T + D SA+R+I SF + + + G ++L +V GQS
Sbjct: 392 DRINDALGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLIINGTEWLSLKVHGQS 451
Query: 403 FMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FM+HQIRKM+ +A +VR C + + ET D I +P AP +GL L+ IF SYNK+
Sbjct: 452 FMMHQIRKMVAMAALIVRCGCDIKLVPETY--GDQKIAIPKAPGLGLLLERPIFDSYNKR 509
>gi|320588025|gb|EFX00500.1| tRNA pseudouridine synthase [Grosmannia clavigera kw1407]
Length = 899
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 133/424 (31%), Positives = 203/424 (47%), Gaps = 64/424 (15%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N KTIEGDL A +GA+++ + +P++ R ART
Sbjct: 416 KRKVAVMIGYAGTGYRGMQINHDEKTIEGDLFAAFVAAGAIAKTNADDPKKSSLVRCART 475
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + ++ +VER+N++LP QIR++G +R SF+ + CD R Y YL
Sbjct: 476 DKGVHAAGNVISLKLIVEDADVVERINAHLPPQIRVWGIQRTINSFSCYQACDSRWYEYL 535
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
LP +AL H D S + G E+V ++ +G M Y + ++
Sbjct: 536 LPSYAL-LPPHPD--SFL-----GREMVASARRADAAEGAVGGM----YDDMVHRLEDVR 583
Query: 239 SLNSQVKVDTVVSTCNG-----------DRHNTNLESV------ESNKTISESVMVENAN 281
S V+ D V +G H T+ ++ + KT+ E+
Sbjct: 584 DFWSDVERDVVTPILDGLDAEVRRLVVEQLHATDFRTLGHRSLDDIEKTVEEAAKPAAEL 643
Query: 282 SESVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEE 341
+ + ET ++ + ++ T + V A+ R +L
Sbjct: 644 TATAPETPTKAAVDQVLREIKT-----------AYVAAKRRYRITPTRL----------- 681
Query: 342 EKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGI-----DFLKC 396
R L Y G+ NFHN+T + +D SA+R+I SF VVN E I +L
Sbjct: 682 --ARLQEALSMYEGTSNFHNYTVQKSFKDASAKRHIKSF----VVNPEPIQMRDTQWLSL 735
Query: 397 EVVGQSFMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIF 455
V GQSFM+HQIRKM+ +AV + R AP ++ + I++P AP GL L+ +F
Sbjct: 736 RVHGQSFMMHQIRKMVAMAVMLTRCGTAPGPAMKLSYGPR-RISIPRAPGFGLLLERPVF 794
Query: 456 ASYN 459
SYN
Sbjct: 795 DSYN 798
>gi|398404858|ref|XP_003853895.1| hypothetical protein MYCGRDRAFT_39250 [Zymoseptoria tritici IPO323]
gi|339473778|gb|EGP88871.1| hypothetical protein MYCGRDRAFT_39250 [Zymoseptoria tritici IPO323]
Length = 538
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 121/417 (29%), Positives = 202/417 (48%), Gaps = 56/417 (13%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+ K+A+ Y G GY+GMQ + KTIEGDL EA +GA+S+ + +P++ + R ART
Sbjct: 73 KHKVAVMIGYSGTGYKGMQISGSEKTIEGDLFEAFVRAGAISKANAEDPKKSSFVRCART 132
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + ++ +VE++N+ L +QIR++G +R SF+ + CD R Y YL
Sbjct: 133 DKGVHAAGNMISLKLIVEDENIVEKINAELSSQIRVWGIERTIGSFSCYQACDSRWYEYL 192
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P SH + + SG L K LE L ++D
Sbjct: 193 IP-------SH----AFLPPHPSG-WLAKQLEA-----------------LADQADDRAG 223
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESN---KTISESVMVENANSESVNETLVESRTS 295
+ Q +V + + L+S++ + + E A+++ V E +T+
Sbjct: 224 YESRQEEVKGFWEKVDEEHIKPILDSIDEDIRWDVVKALQGEEEASAKVVQSEDTEQKTT 283
Query: 296 ETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRI---LKH 352
+ + T +D + + + ++ + +R RI L
Sbjct: 284 TVAKPQATPEEIDRTQRLRAATRRLRNAYTAAKRHYRIP--------TRRIERIQDALSQ 335
Query: 353 YVGSHNFHNFTTRTKAEDPSARRYIISFGAD--SVVNVEGID-----FLKCEVVGQSFML 405
YVG+ N+HN+T + +DPSA+R+I SF + ++ EG D +L +V GQSFM+
Sbjct: 336 YVGTRNYHNYTIQKTYKDPSAKRHIKSFTVNPKPILIGEGPDEEKSEWLSLKVHGQSFMM 395
Query: 406 HQIRKMIGLAVAVVR---NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
HQIRKM+G+ +VR N P L + + ++P P +GL L+ +F +YN
Sbjct: 396 HQIRKMVGMVTLLVRSGSNIRPTMLDSFSENR---YSIPKVPGLGLLLERPVFDTYN 449
>gi|261190138|ref|XP_002621479.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis SLH14081]
gi|239591307|gb|EEQ73888.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis SLH14081]
Length = 605
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 132/427 (30%), Positives = 204/427 (47%), Gaps = 68/427 (15%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ +GY G+ ++P KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 120 KKKVAVM-----LGYSGIYRSPTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCART 174
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + ++ +V+++N L QIR++G + SF++ CD R Y YL
Sbjct: 175 DKGVHAAGNVVSLKLIVEDSDIVQKINEQLSPQIRVWGIEITNKSFSSYHLCDSRIYEYL 234
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLE------------------CSERGRKVIG 220
+P S G +LV+ E E K I
Sbjct: 235 IPTHCFLPPH--------PSTSLGQKLVEIAEQENDLEGYKQRQAEVATYWKEVDEKYIQ 286
Query: 221 VMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENA 280
+ +R LP N +VK +V + G ++S +S + E
Sbjct: 287 PILER-----LPEVTRN-----RVKRALIVKSDTGP-----VDSSDSQGEQKLNPSNEGD 331
Query: 281 NSESVNETLVESRTSETVQNENTDLSLD---LDSKNDSKVMAEERSVNGEEKLLKGSGFC 337
++ + NET +++ NEN D S + + ND+ M ++ + +
Sbjct: 332 DAPTSNETSIQT-------NENKDTSAEDAQTVTTNDAIRMIRAAYLDAKR------AYR 378
Query: 338 YGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLK 395
+E R N L YVG+ NFHN+T + D SA+R I SF D ++ + G ++L
Sbjct: 379 IPKERMDRINDALGMYVGTRNFHNYTIQKSFRDASAKRLIKSFKISRDPLI-INGTEWLS 437
Query: 396 CEVVGQSFMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454
+V GQSFM+HQIRKM+ + VVR C Q + ET +D I +P AP +GL L+ I
Sbjct: 438 LKVHGQSFMMHQIRKMVAMVALVVRCGCDIQRIPETY--EDHKIAIPKAPGLGLLLERPI 495
Query: 455 FASYNKK 461
F SYNK+
Sbjct: 496 FDSYNKR 502
>gi|258574223|ref|XP_002541293.1| hypothetical protein UREG_00807 [Uncinocarpus reesii 1704]
gi|237901559|gb|EEP75960.1| hypothetical protein UREG_00807 [Uncinocarpus reesii 1704]
Length = 578
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/416 (30%), Positives = 195/416 (46%), Gaps = 61/416 (14%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY GMQ + +TIEG++ AL +GA+S+ + +P++ + R ART
Sbjct: 107 KRKVAVLLGYSGTGYHGMQMSTKERTIEGEIFPALVAAGAISKANAMDPKKSSFVRCART 166
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ P LV+++N L QIRI+G + F+ +FCD R Y YL
Sbjct: 167 DKGVHAAGNVISLKLIIEDPDLVKKVNDILSPQIRIWGIEPTNKGFSCYQFCDSRIYEYL 226
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENA 238
+P + S K E +E+
Sbjct: 227 IPTHCF-----------IPPHPSTFLAKKLQEAAEK----------------------EG 253
Query: 239 SLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETV 298
L + K V T D N ++ + S+ + + V+ A + +S TS
Sbjct: 254 DLEAHRKRQEEVLTYWEDIDNEYIKPILSDLPEATRIKVQEALCIKDQKAGNQSETSGIG 313
Query: 299 QNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRI--------- 349
+ L+ DS ++R+++ K ++ + F + KR RI
Sbjct: 314 SAQEDQGGLEHDS--------DDRAIDAVIKSVRAAYF-----KAKRAYRIPPARLARVQ 360
Query: 350 --LKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCEVVGQSFML 405
L YVG+ NFHN+T + DPSA+R I SF D ++ + G ++L +V GQSFM+
Sbjct: 361 EVLDLYVGTRNFHNYTIQKTFRDPSAKRVIKSFKISKDPII-IGGTEWLSLKVHGQSFMM 419
Query: 406 HQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
HQIRKM+ +A +VR + LI + AP +GL L+ IF +YNKK
Sbjct: 420 HQIRKMVAMAALIVRCGSDPQLIAQSYGPPKIPIP-KAPGLGLLLERPIFDTYNKK 474
>gi|226293711|gb|EEH49131.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb18]
Length = 597
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/413 (29%), Positives = 196/413 (47%), Gaps = 76/413 (18%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY GMQ + KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 133 KRKVAVLLGYSGSGYHGMQLSQTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCART 192
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKK-----FCDQR 173
DKGV A G VVS + ++ +V+++N++L QIR++G + S+N ++ + ++
Sbjct: 193 DKGVHAAGNVVSLKLIVEDSDVVQKINNHLSPQIRVWGIEVTNKSYNQRQAEVATYWEKV 252
Query: 174 RYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLP- 232
Y+ P+ L+ R V +L ++ + + G G++ P
Sbjct: 253 DEEYIKPI--LERMPEATRMRVQQAL--------MVKSNTKSADNSGSHGEQNQPDPAPE 302
Query: 233 SNDENASLNSQV-KVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVE 291
+ND AS N + K++ T + D L++V +N+ I ++ +E
Sbjct: 303 TNDAPASNNETLNKINENTETKDADPEE--LQAVTNNEAI-----------RAIRAAYLE 349
Query: 292 SRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILK 351
++ + + E D R N L
Sbjct: 350 AKRAYRIPKERID----------------------------------------RINDALD 369
Query: 352 HYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCEVVGQSFMLHQIR 409
YVG+ NFHN+T + + SA+R+I SF D ++ + G ++L +V GQSFM+HQIR
Sbjct: 370 LYVGTRNFHNYTIQKSFREASAKRHIKSFKISRDPII-INGTEWLSLKVHGQSFMMHQIR 428
Query: 410 KMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
KM+ + VVR C Q + ET D I +P AP +GL L+ IF SYNK+
Sbjct: 429 KMVAMVAMVVRCGCDIQRIPET--YGDQKIAIPKAPGLGLLLERPIFDSYNKR 479
>gi|255087382|ref|XP_002505614.1| predicted protein [Micromonas sp. RCC299]
gi|226520884|gb|ACO66872.1| predicted protein [Micromonas sp. RCC299]
Length = 294
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/128 (56%), Positives = 94/128 (73%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
K+RKIA F AY G GYQG Q+NPGA+TIE +LE A+ +G +S + G+ + W R+AR
Sbjct: 3 KKRKIAAFLAYVGKGYQGFQRNPGARTIEDELERAIVAAGGISADNAGDFTKVQWTRAAR 62
Query: 118 TDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
TDKGVSAVGQ ++ R +DPPG++ER+N+ LP +IFGYKRVT FNAK CD+RRY Y
Sbjct: 63 TDKGVSAVGQCIALRMVLDPPGVLERINAALPEGFKIFGYKRVTGGFNAKTMCDRRRYEY 122
Query: 178 LLPVFALD 185
++P A D
Sbjct: 123 VIPTCAFD 130
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 60/90 (66%)
Query: 332 KGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGI 391
+ F + EE + R N+IL +Y G+HNFHN+T R D +A RYIISF ++G+
Sbjct: 143 EAKAFVFDEELRARVNKILGNYCGTHNFHNYTVRVDPNDAAAMRYIISFECGEPFVIDGV 202
Query: 392 DFLKCEVVGQSFMLHQIRKMIGLAVAVVRN 421
+F++ VVGQSFMLHQIRK+IG + VVR
Sbjct: 203 EFVRTTVVGQSFMLHQIRKLIGTMLCVVRG 232
>gi|303288890|ref|XP_003063733.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454801|gb|EEH52106.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 313
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 95/127 (74%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+AIF AY G GYQGMQ+NPGA TIE +LE+A+ +G +S+ + G+ + W R+ART
Sbjct: 1 KRKVAIFLAYVGKGYQGMQRNPGAVTIEDELEKAIVAAGGISDLNAGDFAKVQWMRAART 60
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGVSAVGQ VS R IDPPG+++R+N+ LP FGY+RVT FNAK CD+RRY Y+
Sbjct: 61 DKGVSAVGQCVSLRMVIDPPGVIDRVNAALPEGFEFFGYERVTGGFNAKTMCDRRRYEYV 120
Query: 179 LPVFALD 185
+PV A D
Sbjct: 121 VPVKAFD 127
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 91/131 (69%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLK 395
F + E ++R N+IL +YVG+HNFHNFT R ++PSA RYIISF + V+G+ F++
Sbjct: 140 FEFDETMRQRVNKILGNYVGTHNFHNFTVRVSPDEPSAMRYIISFDCSAPFVVDGVAFVR 199
Query: 396 CEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIF 455
C VVGQSFMLHQIRK+IG+ + V+R + AL ++NVP APE+GL+L ECI+
Sbjct: 200 CVVVGQSFMLHQIRKLIGMMLGVIRGAWSEEDQLFALNTKESVNVPMAPELGLFLCECIY 259
Query: 456 ASYNKKWKDSH 466
+YN ++ +H
Sbjct: 260 HAYNVRYASTH 270
>gi|145355737|ref|XP_001422107.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582347|gb|ABP00424.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 308
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 93/128 (72%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
K+RK A+ FAY G GY GMQ+NPG +TIEG+LE A+ +G +S+ + G+ + W R+AR
Sbjct: 1 KKRKCAVTFAYVGAGYAGMQRNPGVRTIEGELEGAIARAGGISDANAGDFAKVQWTRAAR 60
Query: 118 TDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
TDKGVSAVGQVV+ + ++P G+VER+N+ LP + +FG RVT FNAK CD+RRY Y
Sbjct: 61 TDKGVSAVGQVVALKMVLEPSGMVERINAALPERFEVFGIDRVTGGFNAKTMCDRRRYEY 120
Query: 178 LLPVFALD 185
++P A D
Sbjct: 121 VIPTRAFD 128
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVV 399
EE + R + +LK+Y G+HNFHN+T + K D A+RYIISF + VEG F++C+VV
Sbjct: 144 EETRSRVDGVLKNYCGTHNFHNYTVKVKPTDAQAKRYIISFECSAPFEVEGEQFVRCQVV 203
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
GQSFMLHQIRK+IG +AVVR + + AL + P APE+GL+L ECI+ +YN
Sbjct: 204 GQSFMLHQIRKLIGTMLAVVRGELTEDDQKFALLTHEFVPTPMAPELGLFLCECIYKAYN 263
Query: 460 KKWKDSHE 467
K+ HE
Sbjct: 264 DKFGGVHE 271
>gi|384253414|gb|EIE26889.1| pseudouridine synthase, partial [Coccomyxa subellipsoidea C-169]
Length = 314
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/125 (56%), Positives = 92/125 (73%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
K+RK+A+F A+ G GY GMQ NPG KTIEG+L A+ +GA+S+ + G+ + W R+AR
Sbjct: 1 KKRKVAVFVAFVGAGYSGMQHNPGCKTIEGELGSAMNKAGAISDENAGDFSKVQWNRAAR 60
Query: 118 TDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
TDKGVSA G VVS + I P VER+NS+LP QIR+ G+ RVT SF+A+K CD+RRY Y
Sbjct: 61 TDKGVSAAGNVVSLKMMIAFPDTVERINSHLPEQIRVLGFTRVTNSFDARKHCDRRRYEY 120
Query: 178 LLPVF 182
+LP F
Sbjct: 121 ILPAF 125
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 127/239 (53%), Gaps = 10/239 (4%)
Query: 234 NDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESR 293
+DENA S+V+ + T G N+ S++ ++V E NS + V
Sbjct: 43 SDENAGDFSKVQWNRAARTDKGVSAAGNVVSLKMMIAFPDTV--ERINSHLPEQIRVLGF 100
Query: 294 TSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLK----GSGFC-YGEEEKKRFNR 348
T T + D D + ++ +++G GS C + E++ R N
Sbjct: 101 TRVT---NSFDARKHCDRRRYEYILPAFITIDGAAAAAAAEAAGSRQCRFSAEQQARLNE 157
Query: 349 ILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQI 408
+L + G+H+FHN+T R A DP+A+RYI+SF +N+EG +++ VVGQSFMLHQI
Sbjct: 158 VLGAFEGTHSFHNYTVRVPASDPAAKRYILSFKCAGTMNLEGQQWVRMVVVGQSFMLHQI 217
Query: 409 RKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHE 467
RK++G AVAV+R A I AL + P APE+GL+LDEC+F SYN +W + E
Sbjct: 218 RKLVGTAVAVMRGVATPDAITLALDPARVVVTPMAPELGLFLDECVFESYNDRWGNDRE 276
>gi|317033787|ref|XP_001395447.2| tRNA pseudouridine synthase [Aspergillus niger CBS 513.88]
Length = 517
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 119/417 (28%), Positives = 199/417 (47%), Gaps = 59/417 (14%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY+GMQ + KTIEG+L A +GA+S+ + +P++ R ART
Sbjct: 47 KKKVAVLLGYSGTGYKGMQLSETEKTIEGELFAAFVAAGAISKANATDPKKSSLVRCART 106
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G +VS + ++ +++++N L +QIR++ SF++ + + ++
Sbjct: 107 DKGVHAAGNIVSLKLIVEDDDIIQKINEKLSSQIRVWDILVTNKSFSSYQLTYLGKKLFE 166
Query: 179 LPVFALDSSSHRDRESVMASLG--SGNELVKCL--ECSERGRKVIGVMGKRTYQLGLPSN 234
D ++ R+ +AS + + V+ + E RK++ + L N
Sbjct: 167 YAEKEGDLEGYKARQEEVASYWEETDEKYVRPILDNTPEDIRKLVEKV--------LHLN 218
Query: 235 DENASLNSQVKVDTVVSTCN--GDRHNTNLESVESNKTISESVMVENANSESVNETLVES 292
DE+ S D + T + T S E +E E A + ET+
Sbjct: 219 DEDQSAQ-----DDMFQTQDKPASEETTEQPSSEGKPADAEKDEAEEARRRKIFETVKAI 273
Query: 293 RTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKH 352
+ + L +K ++ A +R +E L K G
Sbjct: 274 KAAY------------LQAKRAYRIPA-QRLARVQEALDKYVG----------------- 303
Query: 353 YVGSHNFHNFTTRTKAEDPSARRYIISFG-ADSVVNVEGIDFLKCEVVGQSFMLHQIRKM 411
++NF N+T + DPS++R+I SF A+ + + G ++L +V GQSFM+HQIRKM
Sbjct: 304 ---TNNFFNYTIQKTHADPSSKRHIKSFKMAEQPIIINGTEWLSLKVHGQSFMMHQIRKM 360
Query: 412 IGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHE 467
+ +A VVR C PQ ++ET I +P AP +GL L+ +F SYN+K +HE
Sbjct: 361 VAMAAMVVRCGCDPQRIVETYGAN--KIAIPKAPGLGLLLERPVFDSYNRK---THE 412
>gi|302818082|ref|XP_002990715.1| hypothetical protein SELMODRAFT_132245 [Selaginella moellendorffii]
gi|300141453|gb|EFJ08164.1| hypothetical protein SELMODRAFT_132245 [Selaginella moellendorffii]
Length = 318
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/134 (55%), Positives = 90/134 (67%), Gaps = 4/134 (2%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRY-DWARSARTD 119
K A+F YCG GY+GMQ+NPGA TIEG LEEAL +GA+ G R + DW R+ARTD
Sbjct: 3 KAALFVVYCGAGYKGMQRNPGALTIEGVLEEALGRAGAIG--SNGCSRNWLDWKRAARTD 60
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
K VSA+GQVVS R + P LV R N LP I++ G+KRV F+AKK CD RRY Y+L
Sbjct: 61 KEVSALGQVVSARLYLTP-DLVHRTNEFLPGSIQLLGFKRVPDDFSAKKMCDSRRYEYVL 119
Query: 180 PVFALDSSSHRDRE 193
PVFA D + D E
Sbjct: 120 PVFAFDPRTGDDLE 133
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 344 KRFNRILKHYVGS-HNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQS 402
+RFN+IL ++G+ H+FHNF+ R + D ARR ++ F A + + G +F++ V+ +S
Sbjct: 141 ERFNQILGRFLGTDHSFHNFSWRVRPGDREARRTVVEFRAADKIWIGGSEFVRIIVLARS 200
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
FM +QIRKM+GLAVAV+R+ AP + I AL+ +V++ VPTAPEVGL LDE + YN
Sbjct: 201 FMAYQIRKMVGLAVAVMRDIAPVTTINRALRSEVDVIVPTAPEVGLLLDESFYHDYN 257
>gi|302810046|ref|XP_002986715.1| hypothetical protein SELMODRAFT_124462 [Selaginella moellendorffii]
gi|300145603|gb|EFJ12278.1| hypothetical protein SELMODRAFT_124462 [Selaginella moellendorffii]
Length = 318
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/134 (55%), Positives = 89/134 (66%), Gaps = 4/134 (2%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRY-DWARSARTD 119
K A+F YCG GY+GMQ+NPGA TIEG LEEAL +GA+ G R + DW R+ARTD
Sbjct: 3 KAALFVVYCGAGYKGMQRNPGAATIEGVLEEALVRAGAIG--SNGCSRNWLDWKRAARTD 60
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
K VSA+GQVVS R + P LV R N LP IR+ G+KRV F+AKK C RRY Y+L
Sbjct: 61 KEVSALGQVVSARLYLTP-DLVHRTNEFLPGSIRLLGFKRVPDDFSAKKMCASRRYEYVL 119
Query: 180 PVFALDSSSHRDRE 193
P+FA D + D E
Sbjct: 120 PIFAFDPRTGDDLE 133
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 344 KRFNRILKHYVGS-HNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQS 402
+RFN+IL ++G+ H+FHNF+ R + D ARR ++ F A + + G +F++ V+ +S
Sbjct: 141 ERFNQILGRFLGTDHSFHNFSWRVRPGDREARRTVVEFRAADKIWIGGSEFVRIIVLARS 200
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
FM +QIRKM+GLAVAV+R+ AP + I AL+ +V++ VPTAPEVGL LDE + YN
Sbjct: 201 FMAYQIRKMVGLAVAVMRDIAPVTTINRALRSEVDVIVPTAPEVGLLLDESFYHDYN 257
>gi|452820462|gb|EME27504.1| tRNA pseudouridine synthase A [Galdieria sulphuraria]
Length = 943
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 30 SATSTSDDERDLIPAAAGADSTTKRQLC------------KRRKIAIFFAYCGVGYQGMQ 77
S +T+ + +L+ A+A + K +C KR K AI Y G YQGMQ
Sbjct: 43 SLVTTTTKKDNLLLASAEESVSVKTSVCNSKTVAHNSNSKKRHKFAIVIGYLGAAYQGMQ 102
Query: 78 KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDP 137
+NPGA +IEG+LE+AL +G + GN R+ +W+R+ARTDKGVSA GQVVS +D
Sbjct: 103 RNPGAVSIEGELEKALVATGLIPNNLEGNLRKIEWSRAARTDKGVSAAGQVVSTYLLVDK 162
Query: 138 -----PGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+++R+N LPT IRI G V+ F+AK CD+RRY Y+ P + L
Sbjct: 163 DFEREQDILKRVNDTLPTDIRILGVYSVSGGFHAKNACDRRRYSYMFPSWTL 214
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 322 RSVNGEEKLLKGSGFCYGEEEK-KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF 380
RS EK+LK S + + K N +LK+++G+H+FHNFT + + + +RYI+ F
Sbjct: 216 RSKQEHEKMLKDSDYKNIMKAKVDDLNDLLKYFIGTHHFHNFTVGQTSSNGTCQRYILEF 275
Query: 381 GADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINV 440
+ G FL VVGQSF+LHQIRKMIGLA+AV + P+ +L K +
Sbjct: 276 FCSLPFFIGGESFLNVTVVGQSFLLHQIRKMIGLAIAVSKGWIPKEAFNVSLSKHHRLET 335
Query: 441 PTAPEVGLYLDECIFASYNKKWKDSHEE 468
P AP +GL+LDEC+F YN++ +H +
Sbjct: 336 PMAPSLGLFLDECLFERYNERILKNHSD 363
>gi|417410428|gb|JAA51687.1| Putative pseudouridylate synthase, partial [Desmodus rotundus]
Length = 402
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 114/190 (60%), Gaps = 14/190 (7%)
Query: 12 PSPSLSPRQEPDPKR---LKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAY 68
P+P + RQE D K + + D E+ +GAD R+L KR KI + AY
Sbjct: 10 PAP-VGTRQELDKKARSGWQGGGRAWEDTEQPAKKLKSGADGEPPRKLPKR-KIVMLLAY 67
Query: 69 CGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
G GY GMQ+N G+ KTIE DL AL SG + E + R+ + R ARTDKGVSA
Sbjct: 68 SGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPESHGEDMRKMSFQRCARTDKGVSAA 127
Query: 126 GQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K CD R YVY+LP FA
Sbjct: 128 GQVVSLKVWLID--DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYVYMLPTFAF 185
Query: 185 DSSSHRDRES 194
+H+DR++
Sbjct: 186 ---AHKDRDA 192
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 80/122 (65%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSA+RY++ + +G++F +V G
Sbjct: 202 ETLQQVNRLLACYKGTHNFHNFTSQKGPREPSAQRYVLDVFCEEPFERDGMEFAVVKVKG 261
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM HQIRKM+GL VA+ + AP+ L++ + + ++VP AP +GL L+ F +YN+
Sbjct: 262 QSFMTHQIRKMVGLVVAIAKGYAPEDLLQRSW-GEAKVDVPKAPGLGLVLERVHFETYNR 320
Query: 461 KW 462
++
Sbjct: 321 RF 322
>gi|320583409|gb|EFW97622.1| tRNA pseudouridine synthase [Ogataea parapolymorpha DL-1]
Length = 491
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 88/126 (69%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A + +YCG GY GMQ NP AKTIEGDL +A +GA+S+ + + ++ + R+ART
Sbjct: 78 KKKVACYLSYCGTGYHGMQMNPPAKTIEGDLFDAFVKAGAISKNNSNDLKKSSFMRAART 137
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ P LVE++NS LP QIR +GY+RV SF+ +K C R Y YL
Sbjct: 138 DKGVHAAGNVISLKLIIEDPDLVEKINSYLPDQIRFWGYERVNKSFDCRKVCSSRIYEYL 197
Query: 179 LPVFAL 184
+P ++
Sbjct: 198 MPTYSF 203
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIR 409
LK Y+G HNFHNFT +DPSA R++ + + V +++ ++ GQSFMLHQIR
Sbjct: 303 LKIYLGPHNFHNFTNGKDYKDPSAIRFMKNITVSDPIVVNDQEWVSIKIHGQSFMLHQIR 362
Query: 410 KMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
KMI +A VVR P + IE A + +N+P AP +GL L++ ++ SYN K
Sbjct: 363 KMIAMATLVVRTGCPLARIEEAFGPE-KVNIPKAPALGLLLEQPVYESYNAK 413
>gi|164661239|ref|XP_001731742.1| hypothetical protein MGL_1010 [Malassezia globosa CBS 7966]
gi|159105643|gb|EDP44528.1| hypothetical protein MGL_1010 [Malassezia globosa CBS 7966]
Length = 226
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 97/163 (59%), Gaps = 7/163 (4%)
Query: 28 KMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEG 87
K A S + E P A D +L ++RK+A+FF YCG Y G+Q NPG KTIEG
Sbjct: 46 KEDAASGTGKEAGPSPTADTNDEGASTRL-QKRKVALFFGYCGTDYSGLQVNPGVKTIEG 104
Query: 88 DLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG------LV 141
D+ EA +GAVS+ + NP + R+ARTD+GV A G +++ + +DPP L
Sbjct: 105 DIFEAFCRAGAVSKENAVNPNKVQLQRAARTDRGVHAAGNLLTLKLILDPPNLPPNQTLT 164
Query: 142 ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+NS LP QIRI+G +RV ++FNA+ CD R Y YLLP +
Sbjct: 165 TYVNSLLPDQIRIWGMRRVQSAFNARTSCDSRLYEYLLPTYVF 207
>gi|403292192|ref|XP_003937138.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Saimiri
boliviensis boliviensis]
Length = 400
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/192 (44%), Positives = 112/192 (58%), Gaps = 16/192 (8%)
Query: 10 KLPSPSLSPRQEPDPKRLKMSATS----TSDDERDLIPAAAGADSTTKRQLCKRRKIAIF 65
+LPSP+ S R P +R + D E +G D + +L KR K+ +
Sbjct: 6 ELPSPAGSAR--PQDRRSRSGRAGGVRVWEDGEHPAKKLKSGGDEERRGKLPKR-KVVLL 62
Query: 66 FAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
AY G GY GMQ+N G+ KTIE DL AL SG + E + R+ + R ARTDKGV
Sbjct: 63 MAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGV 122
Query: 123 SAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPV 181
SA GQVVS + + ID G++E++NS+LP+ IRI G KRVT FN+K CD R Y YLLP
Sbjct: 123 SAAGQVVSLKVWLID--GILEKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYLLPT 180
Query: 182 FALDSSSHRDRE 193
FA +H+DR+
Sbjct: 181 FAF---AHKDRD 189
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 82/122 (67%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ ++PSARRYI+ + EG++F V G
Sbjct: 200 ETLQQVNRLLARYKGTHNFHNFTSQKGPQEPSARRYILDMYCEEPFVREGLEFAVIRVKG 259
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 260 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 318
Query: 461 KW 462
++
Sbjct: 319 RF 320
>gi|340372817|ref|XP_003384940.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Amphimedon queenslandica]
Length = 422
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 96/166 (57%), Gaps = 12/166 (7%)
Query: 21 EPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNP 80
EP KR+K T ++E+ A G + L KRRK A+ AYCG GY GMQ NP
Sbjct: 6 EPPAKRIK-----TQEEEQ-----AEGNGVEENKSLLKRRKCALVIAYCGKGYMGMQMNP 55
Query: 81 GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPP-- 138
G TIEG+L AL+ +GA+SE + + + + R RTDKGVSA QVVS + P
Sbjct: 56 GVPTIEGELMTALWKAGAISEAHKDSQNKLGFQRCGRTDKGVSAARQVVSLKIIYMVPHQ 115
Query: 139 GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+V +N +LP QIRI G KRV+ SFN+K C R Y YLLP +
Sbjct: 116 SMVSAINEHLPEQIRIIGLKRVSKSFNSKNACTSRLYEYLLPTYVF 161
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 342 EKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQ 401
E R +L Y G+H FHNFT+ K DPS RYI+SF S ++F+ V GQ
Sbjct: 177 EINRIQALLNMYKGTHKFHNFTSGKKPTDPSCHRYIMSFVIGSPFVKNDLEFVSLNVEGQ 236
Query: 402 SFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
SFM+HQIRKMIGL +AVVR I A + ++P AP +GL+LD+ + SYN++
Sbjct: 237 SFMIHQIRKMIGLVIAVVRGYMNDDAITQAFEPP-QTDIPRAPALGLFLDQVYYKSYNRR 295
Query: 462 WKD 464
+ D
Sbjct: 296 FGD 298
>gi|308813608|ref|XP_003084110.1| tRNA pseudouridylate synthase (ISS) [Ostreococcus tauri]
gi|116055993|emb|CAL58526.1| tRNA pseudouridylate synthase (ISS) [Ostreococcus tauri]
Length = 450
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 91/144 (63%), Gaps = 4/144 (2%)
Query: 324 VNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGAD 383
V G EK F + EE ++R R+L +Y G+HNFHN+T + K D A+RYI+SF
Sbjct: 161 VEGAEK----EKFTFTEETRRRVERVLGNYCGTHNFHNYTVKVKPTDAQAKRYILSFECS 216
Query: 384 SVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTA 443
V+G +F++CEVVGQSFMLHQIRK+IG +AV+R + + A+ + P A
Sbjct: 217 QPFEVDGEEFVRCEVVGQSFMLHQIRKLIGTMLAVMRGTLDEDDQKFAILSHQFVPTPMA 276
Query: 444 PEVGLYLDECIFASYNKKWKDSHE 467
PE+GL+L ECI+ +YN K+ H+
Sbjct: 277 PELGLFLCECIYKAYNDKFGSVHD 300
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 83/128 (64%), Gaps = 11/128 (8%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
K+RK A+ FAY G GY GMQ+NPG +TIEG+LE A+ +G +S+ + G+ + W R+AR
Sbjct: 40 KKRKCALTFAYVGAGYAGMQRNPGVRTIEGELEGAIARAGGISDANAGDFAKVQWTRAAR 99
Query: 118 TDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
TDKGVSAVGQV++ + ++P G++ R+N LP + +FG RVT Y Y
Sbjct: 100 TDKGVSAVGQVIALKMVMEPDGMLARINEALPERFEVFGIDRVTGG-----------YEY 148
Query: 178 LLPVFALD 185
++P +A D
Sbjct: 149 VIPTWAFD 156
>gi|449454977|ref|XP_004145230.1| PREDICTED: putative tRNA pseudouridine synthase-like [Cucumis
sativus]
Length = 507
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 126/466 (27%), Positives = 198/466 (42%), Gaps = 76/466 (16%)
Query: 1 MENAETNTEKLPSPSLSPRQEP-DPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKR 59
+ A ++ + P P R P P L ++ST+ D D K Q ++
Sbjct: 14 ITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTAST--DAFSTRCAPDQLRKWQAFRK 71
Query: 60 RKIAIFFAYCGVGYQG--MQKNP-GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+K+ + Y G Y+G MQ+N TIE +LE+A++ +G + + + GN + WARS+
Sbjct: 72 KKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYGNLNKISWARSS 131
Query: 117 RTDKGVSAVGQVVS------GRFCIDPP---GLVERLNSNLPTQIRIFGYKRVTASFNAK 167
RTDKGV ++ ++ G ID P L + +NS LP I++FG F+ +
Sbjct: 132 RTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFGIVPAQKRFDPR 191
Query: 168 KFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTY 227
K CD R Y YLLP + S + + +++K E + Y
Sbjct: 192 KECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEGDH---PFHNYTVRSIY 248
Query: 228 QLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLE-SVESNKTISESVMVENANSESVN 286
+ + + +L S KV GD N+ E S + N T E + + S S+
Sbjct: 249 RTRIRAKQLVYALKSGKKVSP------GDMSNSEFEGSDQENDTFVEGIKEPDQRSPSL- 301
Query: 287 ETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKG--SGFCYGEEEKK 344
+V T++ L+ +G E LLKG + + + +EK
Sbjct: 302 ----------SVCENLTEVCSKLE--------------DGSE-LLKGVRARWLHEPDEKD 336
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
R +G+ +F R I+ + G DF++ + G+SFM
Sbjct: 337 R--------IGASHF---------------RRILYCSCGKLETYFGCDFIEISIWGESFM 373
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
LHQIRKMI AVAV R P+ +I +L K I +P AP L L
Sbjct: 374 LHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVLVL 419
>gi|213401667|ref|XP_002171606.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|211999653|gb|EEB05313.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 453
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 176/409 (43%), Gaps = 61/409 (14%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+IA+ Y G Y G+Q N TIE + + G + + D + +R+ARTDK
Sbjct: 42 RIAVLLGYSGTKYHGIQLNNPHATIERVVLDVFQALGLIRDTDADH---ISLSRAARTDK 98
Query: 121 GVSAVGQVVS---GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A+G VVS F L RLN LP IR++ +V SFN + CD R Y Y
Sbjct: 99 GVHALGNVVSFLVSNFTFTGKELATRLNEKLPEDIRVWDVLKVPMSFNPRLCCDSRLYEY 158
Query: 178 LLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDEN 237
LP FAL + + G+K+ + ++ LP + N
Sbjct: 159 YLPSFAL---------------------IPPRTTCQLGKKMQPNLARK----NLPDEEAN 193
Query: 238 ASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSET 297
+ Q +V NT ES+++ ES+ +++ + E+
Sbjct: 194 FVRDIQQEV------------NTFWESIDT-----ESIRLKDEFE----------KDPES 226
Query: 298 VQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKR--FNRILKHYVG 355
QN T D K+ A + + + + S Y + F + + Y+G
Sbjct: 227 FQNPYTKYFPDKPIPPHIKLPATVKLKKALKCVERHSYMKYRVSSTRLAFFQKACEEYIG 286
Query: 356 SHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLA 415
+HNFHNFT A S+ RYI S + +++ + GQSFMLHQIRKM+ A
Sbjct: 287 NHNFHNFTVNQDAASRSSWRYIHSIQLGKPFVYKEWEWVPVFLHGQSFMLHQIRKMLAHA 346
Query: 416 VAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKD 464
+ VVR AP S + A + +N+ +P L L +F++ + WKD
Sbjct: 347 IMVVRTAAPISCVTKAF-TETPLNISRSPGHVLLLRNPVFSNIPQDWKD 394
>gi|76638649|ref|XP_593895.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 1
[Bos taurus]
gi|297484682|ref|XP_002694500.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Bos
taurus]
gi|296478661|tpg|DAA20776.1| TPA: pseudouridylate synthase 1 [Bos taurus]
gi|440909768|gb|ELR59645.1| tRNA pseudouridine synthase A, mitochondrial [Bos grunniens mutus]
Length = 433
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 101/168 (60%), Gaps = 11/168 (6%)
Query: 49 DSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRG 105
D +R+L KR KI + AY G GY GMQ+N G+ KTIE DL AL SG + E
Sbjct: 80 DGEQQRKLPKR-KIVLLMAYSGKGYHGMQRNVGSSKFKTIEDDLVSALVRSGCIPENHGE 138
Query: 106 NPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASF 164
+ R+ + R ARTDKGVSA GQVVS + + ID ++E++NS+LP+ IRI G KRVT F
Sbjct: 139 DMRKMSFQRCARTDKGVSAAGQVVSLKVWLID--DILEKINSHLPSHIRILGLKRVTGGF 196
Query: 165 NAKKFCDQRRYVYLLPVFALDSSSHRDRESVM----ASLGSGNELVKC 208
N+K CD R YVY+LP FA H ++ +LG N L+ C
Sbjct: 197 NSKNKCDARTYVYMLPTFAFAHKDHDSQDETYRLSAETLGRVNRLLAC 244
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
R NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V GQSFM
Sbjct: 237 RVNRLLACYKGTHNFHNFTSQKGPHEPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFM 296
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
HQIRKM+GL VA+V+ AP+S++E + ++VP AP +GL L+ F YN+++
Sbjct: 297 THQIRKMVGLVVAIVKGYAPESVLERCW-GEAKVDVPKAPGLGLVLERVHFEKYNQRF 353
>gi|424512964|emb|CCO66548.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 92/134 (68%), Gaps = 7/134 (5%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
K++KIA+FF Y G GYQGMQ+NPGAKTIE DLE A+ +G ++E + G+ + W R+AR
Sbjct: 104 KKKKIALFFGYNGDGYQGMQRNPGAKTIEDDLESAIVKAGGIAESNSGDFNKVHWNRAAR 163
Query: 118 TDKGVSAVGQVVSGRFCIDPPG-----LVERLNSNLPT-QIRIFGYKRVTASFNAKKFCD 171
TDKGVSAVGQVVS + C++ +V +N +LP +I FG RVT F+AK CD
Sbjct: 164 TDKGVSAVGQVVSFK-CMNADDGNTETIVRLINEHLPRGKIVAFGATRVTGGFSAKNQCD 222
Query: 172 QRRYVYLLPVFALD 185
+R+Y Y++PV D
Sbjct: 223 RRKYEYVVPVRTFD 236
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 88/127 (69%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLK 395
+ + EEE+ + N ILKH+VG+HNFHN++T+ + P ARR++ISF ++G DF+K
Sbjct: 291 YVFTEEERTKVNDILKHFVGTHNFHNYSTKVDCDTPQARRFVISFSCSMPFKIQGEDFVK 350
Query: 396 CEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIF 455
E++GQSF+ + IRK++G+ VAV R+ S + AL+ +N P APE+GL+L EC +
Sbjct: 351 FEILGQSFLFNMIRKLVGMTVAVARDFCDVSDLLFALRTKQRVNTPMAPELGLFLCECQY 410
Query: 456 ASYNKKW 462
+YNK++
Sbjct: 411 DAYNKRF 417
>gi|426374727|ref|XP_004054216.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Gorilla
gorilla gorilla]
Length = 427
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 109/203 (53%), Gaps = 28/203 (13%)
Query: 12 PSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTT-----------------KR 54
P PS SPR + + L A D R AG D +R
Sbjct: 21 PRPSCSPRMAGNAEPLPAGAACPRD--RRSCSGWAGGDRVWEDGEHPTKKLKSCGDEERR 78
Query: 55 QLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYD 111
+ +RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E + R+
Sbjct: 79 EKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 138
Query: 112 WARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFC 170
+ R ARTDKGVSA GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K C
Sbjct: 139 FQRCARTDKGVSAAGQVVSLKVWLID--DILEKINSHLPSHIRILGLKRVTGGFNSKNRC 196
Query: 171 DQRRYVYLLPVFALDSSSHRDRE 193
D R Y YLLP FA +H+DR+
Sbjct: 197 DARTYCYLLPTFAF---AHKDRD 216
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E +R NR+L Y G+HNFHNFT++ +DPSA RYI+ + EG++F V G
Sbjct: 227 ETLQRVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKG 286
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 287 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 345
Query: 461 KW 462
++
Sbjct: 346 RF 347
>gi|431912100|gb|ELK14238.1| tRNA pseudouridine synthase A [Pteropus alecto]
Length = 409
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/198 (43%), Positives = 117/198 (59%), Gaps = 19/198 (9%)
Query: 3 NAETNTEKLPSPSLSPRQEPDPK---RLKMSATSTSDDERDLIPAAAGADSTTKRQLCKR 59
NAE+ P+P + RQE D K + A + E+ + AD +R+L KR
Sbjct: 37 NAES-----PAP-VGARQEQDKKVRSGWQGGAKVWEETEQQAKKLKSSADGEPRRKLPKR 90
Query: 60 RKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
KI + AY G GY GMQ+N G+ KTIE DL AL SG + E + R+ + R A
Sbjct: 91 -KIVLLVAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 149
Query: 117 RTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
RTDKGVSA GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K CD R Y
Sbjct: 150 RTDKGVSAAGQVVSLKVWLID--DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTY 207
Query: 176 VYLLPVFALDSSSHRDRE 193
+Y+LP FA +H+DR+
Sbjct: 208 LYMLPTFAF---AHKDRD 222
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 79/126 (62%), Gaps = 4/126 (3%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E +R NR+L Y G+HNFHNFT++ +PSA+RY++ + +G++F +V G
Sbjct: 233 ETLRRVNRLLARYKGTHNFHNFTSQKGPREPSAQRYVLDMFCEEPFERDGLEFAVIKVTG 292
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM HQIRKM+GL VA+ + AP+ ++E + + ++VP AP +GL L+ F +
Sbjct: 293 QSFMTHQIRKMVGLVVAIAKGYAPEDVLERSW-GEAKVDVPKAPGLGLVLERVHF---ER 348
Query: 461 KWKDSH 466
+K+ H
Sbjct: 349 AFKEQH 354
>gi|296213295|ref|XP_002753209.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Callithrix
jacchus]
Length = 428
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 111/192 (57%), Gaps = 16/192 (8%)
Query: 10 KLPSPSLSPRQEPDPKRLKMSATS----TSDDERDLIPAAAGADSTTKRQLCKRRKIAIF 65
+LPSP+ S R P +R + D E +G D + +L KR K+ +
Sbjct: 34 ELPSPAGSAR--PQDRRSRSGRAGGVRVWEDGEHPAKKLKSGGDEERRGKLPKR-KVVLL 90
Query: 66 FAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
AY G GY GMQ+N G+ KTIE DL AL SG + E + R+ + R ARTDKGV
Sbjct: 91 MAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGV 150
Query: 123 SAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPV 181
SA GQVVS + + ID G++E++N +LP+ IRI G KRVT FN+K CD R Y YLLP
Sbjct: 151 SAAGQVVSLKVWLID--GILEKINRHLPSHIRILGLKRVTGGFNSKNKCDARTYCYLLPT 208
Query: 182 FALDSSSHRDRE 193
FA +H+DR+
Sbjct: 209 FAF---AHKDRD 217
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 82/122 (67%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ ++PSARRYI+ + EG++F V G
Sbjct: 228 ETLQQVNRLLACYEGTHNFHNFTSQKGPQEPSARRYILEMYCEEPFVREGLEFAVIRVKG 287
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+SL+E + + ++VP AP +GL L+ F YN+
Sbjct: 288 QSFMMHQIRKMVGLVVAIVKGYAPESLLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 346
Query: 461 KW 462
++
Sbjct: 347 RF 348
>gi|70166645|ref|NP_079491.2| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Homo
sapiens]
gi|114152895|sp|Q9Y606.3|TRUA_HUMAN RecName: Full=tRNA pseudouridine synthase A, mitochondrial;
AltName: Full=tRNA pseudouridine(38-40) synthase;
AltName: Full=tRNA pseudouridylate synthase I; AltName:
Full=tRNA-uridine isomerase I; Flags: Precursor
gi|18027830|gb|AAL55876.1|AF318369_1 unknown [Homo sapiens]
gi|94466373|gb|AAH09505.2| Pseudouridylate synthase 1 [Homo sapiens]
gi|94466377|gb|AAH19320.2| Pseudouridylate synthase 1 [Homo sapiens]
gi|193786660|dbj|BAG51983.1| unnamed protein product [Homo sapiens]
gi|261860288|dbj|BAI46666.1| pseudouridylate synthase 1 [synthetic construct]
gi|311347138|gb|ADP90494.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347141|gb|ADP90496.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347144|gb|ADP90498.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347147|gb|ADP90500.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347150|gb|ADP90502.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347153|gb|ADP90504.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347156|gb|ADP90506.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347159|gb|ADP90508.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347162|gb|ADP90510.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347165|gb|ADP90512.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347168|gb|ADP90514.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347171|gb|ADP90516.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347174|gb|ADP90518.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347177|gb|ADP90520.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347180|gb|ADP90522.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347183|gb|ADP90524.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347186|gb|ADP90526.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347189|gb|ADP90528.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347192|gb|ADP90530.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347195|gb|ADP90532.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347198|gb|ADP90534.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347201|gb|ADP90536.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347204|gb|ADP90538.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347207|gb|ADP90540.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347210|gb|ADP90542.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347213|gb|ADP90544.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347216|gb|ADP90546.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347219|gb|ADP90548.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347222|gb|ADP90550.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347225|gb|ADP90552.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347228|gb|ADP90554.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347231|gb|ADP90556.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347234|gb|ADP90558.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347237|gb|ADP90560.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347240|gb|ADP90562.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347243|gb|ADP90564.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347246|gb|ADP90566.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347249|gb|ADP90568.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347252|gb|ADP90570.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347255|gb|ADP90572.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
Length = 427
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 110/207 (53%), Gaps = 36/207 (17%)
Query: 12 PSPSLSPRQ----EPDPKRLKMSATSTSDDERDLIPAAAGADSTT--------------- 52
P PS SPR EP P A + +R AG D
Sbjct: 21 PRPSCSPRMAGNAEPPP------AGAACPQDRRSCSGRAGGDRVWEDGEHPAKKLKSGGD 74
Query: 53 --KRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNP 107
+R+ +RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E +
Sbjct: 75 EERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDM 134
Query: 108 RRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNA 166
R+ + R ARTDKGVSA GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+
Sbjct: 135 RKMSFQRCARTDKGVSAAGQVVSLKVWLID--DILEKINSHLPSHIRILGLKRVTGGFNS 192
Query: 167 KKFCDQRRYVYLLPVFALDSSSHRDRE 193
K CD R Y YLLP FA +H+DR+
Sbjct: 193 KNRCDARTYCYLLPTFAF---AHKDRD 216
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +DPSA RYI+ + EG++F V G
Sbjct: 227 ETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKG 286
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 287 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 345
Query: 461 KW 462
++
Sbjct: 346 RF 347
>gi|383413803|gb|AFH30115.1| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Macaca
mulatta]
gi|384942394|gb|AFI34802.1| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Macaca
mulatta]
Length = 427
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 110/206 (53%), Gaps = 34/206 (16%)
Query: 12 PSPSLSPRQ----EPDPKRLKMSATSTSDDERDLIPAAAGA----------------DST 51
P PS SPR EP P + ++ D R A GA
Sbjct: 21 PRPSCSPRMAGNAEPPP-----AGSARPQDRRSRSCWAGGARVWEDGEHPAKKVKSDGDE 75
Query: 52 TKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPR 108
+R +RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E + R
Sbjct: 76 ERRGKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 135
Query: 109 RYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
+ + R ARTDKGVSA GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K
Sbjct: 136 KMSFQRCARTDKGVSAAGQVVSLKVWLID--DILEKINSHLPSHIRILGLKRVTGGFNSK 193
Query: 168 KFCDQRRYVYLLPVFALDSSSHRDRE 193
CD R Y YLLP FA +H+DR+
Sbjct: 194 NRCDARTYCYLLPTFAF---AHKDRD 216
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 82/122 (67%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ ++PSARRYI+ + EG++F V G
Sbjct: 227 ETLQQVNRLLACYKGTHNFHNFTSQKGPQEPSARRYILEMYCEEPFVREGLEFAVIRVKG 286
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 287 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 345
Query: 461 KW 462
++
Sbjct: 346 RF 347
>gi|402888179|ref|XP_003907451.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Papio
anubis]
Length = 427
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 110/206 (53%), Gaps = 34/206 (16%)
Query: 12 PSPSLSPRQ----EPDPKRLKMSATSTSDDERDLIPAAAGA----------------DST 51
P PS SPR EP P + ++ D R A GA
Sbjct: 21 PRPSCSPRMAGNAEPPP-----AGSARPQDRRSRSCWAGGARVWEDGEHPAKKVKSDGDE 75
Query: 52 TKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPR 108
+R +RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E + R
Sbjct: 76 ERRGKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 135
Query: 109 RYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
+ + R ARTDKGVSA GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K
Sbjct: 136 KMSFQRCARTDKGVSAAGQVVSLKVWLID--DILEKINSHLPSHIRILGLKRVTGGFNSK 193
Query: 168 KFCDQRRYVYLLPVFALDSSSHRDRE 193
CD R Y YLLP FA +H+DR+
Sbjct: 194 NRCDARTYCYLLPTFAF---AHKDRD 216
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 82/122 (67%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ ++PSARRYI+ + EG++F V G
Sbjct: 227 ETLQQVNRLLACYKGTHNFHNFTSQKGPQEPSARRYILEMYCEEPFVREGLEFAVIRVKG 286
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 287 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 345
Query: 461 KW 462
++
Sbjct: 346 RF 347
>gi|410251032|gb|JAA13483.1| pseudouridylate synthase 1 [Pan troglodytes]
Length = 438
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 108/206 (52%), Gaps = 34/206 (16%)
Query: 12 PSPSLSPRQ----EPDPKRLKMSATSTSDDERDLIPAAAGADSTT--------------- 52
P PS SPR EP P A + +R AG D
Sbjct: 32 PRPSCSPRMAGNAEPPP------AGAACPQDRRSCSGWAGGDRVWEDGEHPAKKLKSGGD 85
Query: 53 --KRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNP 107
+R+ +RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E +
Sbjct: 86 EERREKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDM 145
Query: 108 RRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
R+ + R ARTDKGVSA GQVVS + + ++E++NS+LP+ IRI G KRVT FN+K
Sbjct: 146 RKMSFQRCARTDKGVSAAGQVVSLKVWLIE-DILEKINSHLPSHIRILGLKRVTGGFNSK 204
Query: 168 KFCDQRRYVYLLPVFALDSSSHRDRE 193
CD R Y YLLP FA +H+DR+
Sbjct: 205 NRCDARTYCYLLPTFAF---AHKDRD 227
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +DPSA RYI+ + EG++F V G
Sbjct: 238 ETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKG 297
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 298 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 356
Query: 461 KW 462
++
Sbjct: 357 RF 358
>gi|397487065|ref|XP_003814633.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Pan
paniscus]
Length = 427
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 109/201 (54%), Gaps = 24/201 (11%)
Query: 12 PSPSLSPRQ----EPDPK-------RLKMSATSTSD-----DERDLIPAAAGADSTTKRQ 55
P PS SPR EP P R S + D E +G D + +
Sbjct: 21 PRPSCSPRMAGNAEPPPAGAACPQDRRSCSGWAGGDRVWEDGEHPAKKLKSGGDEERREK 80
Query: 56 LCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDW 112
L KR KI + AY G GY GMQ+N G+ KTIE DL AL SG + E + R+ +
Sbjct: 81 LPKR-KIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSF 139
Query: 113 ARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
R ARTDKGVSA GQVVS + + ++E++NS+LP+ IRI G KRVT FN+K CD
Sbjct: 140 QRCARTDKGVSAAGQVVSLKVWLIE-DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDA 198
Query: 173 RRYVYLLPVFALDSSSHRDRE 193
R Y YLLP FA +H+DR+
Sbjct: 199 RTYCYLLPTFAF---AHKDRD 216
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +DPSA RYI+ + EG++F V G
Sbjct: 227 ETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKG 286
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 287 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 345
Query: 461 KW 462
++
Sbjct: 346 RF 347
>gi|251823909|ref|NP_001156523.1| tRNA pseudouridine synthase A [Ovis aries]
gi|238815029|gb|ACR56711.1| pseudouridylate synthase 1 [Ovis aries]
Length = 400
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 100/168 (59%), Gaps = 11/168 (6%)
Query: 49 DSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRG 105
D +R+L KR KI + AY G GY GMQ+N G+ KTIE DL AL SG + E
Sbjct: 47 DGEQQRKLPKR-KIVLLMAYSGKGYHGMQRNVGSSKFKTIEDDLVSALVRSGCIPENHGE 105
Query: 106 NPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASF 164
+ R+ + R ARTDKGVSA GQVVS + + ID ++E++NS+LP+ IRI G KRVT F
Sbjct: 106 DMRKMSFQRCARTDKGVSAAGQVVSLKVWLID--DILEKINSHLPSHIRILGLKRVTGGF 163
Query: 165 NAKKFCDQRRYVYLLPVFALDSSSHRDRESVM----ASLGSGNELVKC 208
N+K CD R Y Y+LP FA H ++ +LG N L+ C
Sbjct: 164 NSKNKCDARTYFYMLPTFAFAHKDHDLQDETYRLSAETLGRVNRLLAC 211
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
R NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V GQSFM
Sbjct: 204 RVNRLLACYKGTHNFHNFTSQKGPHEPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFM 263
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
HQIRKM+GL VA+++ AP+ ++E + ++VP AP +GL L+ F YN+++
Sbjct: 264 THQIRKMVGLVVAIIKGYAPEGVLERCW-GEAKVDVPKAPGLGLVLERVHFEKYNQRF 320
>gi|114647862|ref|XP_001139560.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Pan
troglodytes]
gi|410207876|gb|JAA01157.1| pseudouridylate synthase 1 [Pan troglodytes]
gi|410293160|gb|JAA25180.1| pseudouridylate synthase 1 [Pan troglodytes]
gi|410341825|gb|JAA39859.1| pseudouridylate synthase 1 [Pan troglodytes]
Length = 427
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 108/206 (52%), Gaps = 34/206 (16%)
Query: 12 PSPSLSPRQ----EPDPKRLKMSATSTSDDERDLIPAAAGADSTT--------------- 52
P PS SPR EP P A + +R AG D
Sbjct: 21 PRPSCSPRMAGNAEPPP------AGAACPQDRRSCSGWAGGDRVWEDGEHPAKKLKSGGD 74
Query: 53 --KRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNP 107
+R+ +RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E +
Sbjct: 75 EERREKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDM 134
Query: 108 RRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
R+ + R ARTDKGVSA GQVVS + + ++E++NS+LP+ IRI G KRVT FN+K
Sbjct: 135 RKMSFQRCARTDKGVSAAGQVVSLKVWLIE-DILEKINSHLPSHIRILGLKRVTGGFNSK 193
Query: 168 KFCDQRRYVYLLPVFALDSSSHRDRE 193
CD R Y YLLP FA +H+DR+
Sbjct: 194 NRCDARTYCYLLPTFAF---AHKDRD 216
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +DPSA RYI+ + EG++F V G
Sbjct: 227 ETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKG 286
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 287 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 345
Query: 461 KW 462
++
Sbjct: 346 RF 347
>gi|297693488|ref|XP_002824050.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Pongo
abelii]
Length = 424
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 108/191 (56%), Gaps = 13/191 (6%)
Query: 7 NTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFF 66
N E P+ S P+ D + D E +G D + +L KR KI +
Sbjct: 32 NAEPPPAGSACPQ---DLRSWAGGDRVWEDGEHPAKKLKSGGDEERRGKLPKR-KIVLLM 87
Query: 67 AYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
AY G GY GMQ+N G+ KTIE DL AL SG + E + R+ + R ARTDKGVS
Sbjct: 88 AYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVS 147
Query: 124 AVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVF 182
A GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K CD R Y YLLP F
Sbjct: 148 AAGQVVSLKVWLID--NILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTF 205
Query: 183 ALDSSSHRDRE 193
A +H+DR+
Sbjct: 206 AF---AHKDRD 213
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ ++PSARRYI+ + EG++F V G
Sbjct: 224 ETLQQVNRLLACYKGTHNFHNFTSQKGPQEPSARRYILEMYCEEPFVREGLEFAVIRVKG 283
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+ ++E + + ++VP AP +GL L+ F YN+
Sbjct: 284 QSFMMHQIRKMVGLVVAIVKGYAPECVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 342
Query: 461 KW 462
++
Sbjct: 343 RF 344
>gi|119618938|gb|EAW98532.1| pseudouridylate synthase 1, isoform CRA_c [Homo sapiens]
Length = 432
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 108/192 (56%), Gaps = 11/192 (5%)
Query: 6 TNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIF 65
T + + P P +PR + D E +G D +R+ +RKI +
Sbjct: 37 TRSRRPPEPH-APRTGGPAAAGPGATAFWEDGEHPAKKLKSGGDEE-RREKPPKRKIVLL 94
Query: 66 FAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
AY G GY GMQ+N G+ KTIE DL AL SG + E + R+ + R ARTDKGV
Sbjct: 95 MAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGV 154
Query: 123 SAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPV 181
SA GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K CD R Y YLLP
Sbjct: 155 SAAGQVVSLKVWLID--DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPT 212
Query: 182 FALDSSSHRDRE 193
FA +H+DR+
Sbjct: 213 FAF---AHKDRD 221
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +DPSA RYI+ + EG++F V G
Sbjct: 232 ETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKG 291
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 292 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 350
Query: 461 KW 462
++
Sbjct: 351 RF 352
>gi|291415803|ref|XP_002724139.1| PREDICTED: pseudouridylate synthase 1-like, partial [Oryctolagus
cuniculus]
Length = 391
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 111/191 (58%), Gaps = 14/191 (7%)
Query: 11 LPSPS---LSPRQEPDPKRL-KMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFF 66
L +PS ++PR E R + A D E +G D R+L KR KI +
Sbjct: 5 LGAPSAAGVAPRPEEGKARAGRPGARLWEDAEPQAKKLRSGEDGAPPRKLPKR-KIVLLL 63
Query: 67 AYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
AY G GY GMQ+N G+ +TIE DL AL SG + E + R+ + R ARTDKGVS
Sbjct: 64 AYSGKGYHGMQRNVGSSQFRTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVS 123
Query: 124 AVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVF 182
A GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K CD R Y Y+LP F
Sbjct: 124 AAGQVVSLKVWLID--DILEKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYFYMLPTF 181
Query: 183 ALDSSSHRDRE 193
A +H+DR+
Sbjct: 182 AF---AHKDRD 189
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E +R NR+L Y G+H+FHNFT++ +PSARRYI+ + EG++F V G
Sbjct: 200 ETLQRVNRLLACYQGTHSFHNFTSQKGPREPSARRYILQMYCEEPFVREGLEFAVIRVKG 259
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + D ++VP AP +GL L+ F YN+
Sbjct: 260 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSW-GDEKVDVPKAPGLGLVLERVHFEKYNQ 318
Query: 461 KW 462
++
Sbjct: 319 RF 320
>gi|196008069|ref|XP_002113900.1| hypothetical protein TRIADDRAFT_57795 [Trichoplax adhaerens]
gi|190582919|gb|EDV22990.1| hypothetical protein TRIADDRAFT_57795 [Trichoplax adhaerens]
Length = 385
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 100/164 (60%), Gaps = 12/164 (7%)
Query: 22 PDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPG 81
P PK+ K S DE D + T + K+RK+A+ +CG GY GMQ+N G
Sbjct: 17 PSPKKFK------SCDESD---GNEVIQTVTPNDIGKKRKVALLLGFCGAGYFGMQRNRG 67
Query: 82 AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGL 140
KTIE DL ALF +GA+ E + + ++ + R++RTDKGV A QVVS + F +D +
Sbjct: 68 TKTIEEDLINALFKAGAIPEAAKEHEQKMAFQRASRTDKGVHAAAQVVSFKMFVVD--DV 125
Query: 141 VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+ ++NS+LP +IR+FG+ RVT FN+K CD R Y Y++P +A
Sbjct: 126 IAKINSHLPREIRVFGHFRVTKGFNSKTACDARTYKYVMPTYAF 169
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
K IL YVG+ NFHNFT++ ED SA+RYI+ F ++F+ V GQSF
Sbjct: 187 KHVRDILAMYVGTRNFHNFTSKKAYEDDSAKRYIMQFDCGLPFVRNNLEFVTLTVKGQSF 246
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
MLHQIRKMIGL + +VR A +E A +KD +++P AP +GL L + + +YN+K
Sbjct: 247 MLHQIRKMIGLMIGIVRGDATIEAMEKAWEKD-RVDIPRAPGLGLMLYQLHYHAYNRK 303
>gi|4455035|gb|AAD21042.1| pseudouridine synthase 1 [Homo sapiens]
Length = 365
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 94/145 (64%), Gaps = 9/145 (6%)
Query: 53 KRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRR 109
+R+ +RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E + R+
Sbjct: 15 RREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRK 74
Query: 110 YDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
+ R ARTDKGVSA GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K
Sbjct: 75 MSFQRCARTDKGVSAAGQVVSLKVWLID--DILEKINSHLPSHIRILGLKRVTGGFNSKN 132
Query: 169 FCDQRRYVYLLPVFALDSSSHRDRE 193
CD R Y YLLP FA +H+DR+
Sbjct: 133 RCDARTYCYLLPTFAF---AHKDRD 154
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +DPSA RYI+ + EG++F V G
Sbjct: 165 ETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKG 224
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 225 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 283
Query: 461 KW 462
++
Sbjct: 284 RF 285
>gi|355786664|gb|EHH66847.1| hypothetical protein EGM_03911, partial [Macaca fascicularis]
Length = 363
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 93/145 (64%), Gaps = 9/145 (6%)
Query: 53 KRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRR 109
+R +RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E + R+
Sbjct: 13 RRGKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRK 72
Query: 110 YDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
+ R ARTDKGVSA GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K
Sbjct: 73 MSFQRCARTDKGVSAAGQVVSLKVWLID--DILEKINSHLPSHIRILGLKRVTGGFNSKN 130
Query: 169 FCDQRRYVYLLPVFALDSSSHRDRE 193
CD R Y YLLP FA +H+DR+
Sbjct: 131 RCDARTYCYLLPTFAF---AHKDRD 152
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 82/122 (67%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ ++PSARRYI+ + EG++F V G
Sbjct: 163 ETLQQVNRLLACYKGTHNFHNFTSQKGPQEPSARRYILEMYCEEPFVREGLEFAVIRVKG 222
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 223 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 281
Query: 461 KW 462
++
Sbjct: 282 RF 283
>gi|70166599|ref|NP_001002019.1| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Homo
sapiens]
gi|70166634|ref|NP_001002020.1| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Homo
sapiens]
gi|12804097|gb|AAH02901.1| Pseudouridylate synthase 1 [Homo sapiens]
gi|123989720|gb|ABM83888.1| pseudouridylate synthase 1 [synthetic construct]
gi|123999259|gb|ABM87208.1| pseudouridylate synthase 1 [synthetic construct]
gi|158257916|dbj|BAF84931.1| unnamed protein product [Homo sapiens]
gi|311347139|gb|ADP90495.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347142|gb|ADP90497.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347145|gb|ADP90499.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347148|gb|ADP90501.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347151|gb|ADP90503.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347154|gb|ADP90505.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347157|gb|ADP90507.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347160|gb|ADP90509.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347163|gb|ADP90511.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347166|gb|ADP90513.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347169|gb|ADP90515.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347172|gb|ADP90517.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347175|gb|ADP90519.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347178|gb|ADP90521.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347181|gb|ADP90523.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347184|gb|ADP90525.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347187|gb|ADP90527.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347190|gb|ADP90529.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347193|gb|ADP90531.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347196|gb|ADP90533.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347199|gb|ADP90535.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347202|gb|ADP90537.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347205|gb|ADP90539.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347208|gb|ADP90541.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347211|gb|ADP90543.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347214|gb|ADP90545.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347217|gb|ADP90547.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347220|gb|ADP90549.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347223|gb|ADP90551.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347226|gb|ADP90553.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347229|gb|ADP90555.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347232|gb|ADP90557.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347235|gb|ADP90559.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347238|gb|ADP90561.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347241|gb|ADP90563.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347244|gb|ADP90565.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347247|gb|ADP90567.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347250|gb|ADP90569.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347253|gb|ADP90571.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347256|gb|ADP90573.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
Length = 399
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 94/145 (64%), Gaps = 9/145 (6%)
Query: 53 KRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRR 109
+R+ +RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E + R+
Sbjct: 49 RREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRK 108
Query: 110 YDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
+ R ARTDKGVSA GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K
Sbjct: 109 MSFQRCARTDKGVSAAGQVVSLKVWLID--DILEKINSHLPSHIRILGLKRVTGGFNSKN 166
Query: 169 FCDQRRYVYLLPVFALDSSSHRDRE 193
CD R Y YLLP FA +H+DR+
Sbjct: 167 RCDARTYCYLLPTFAF---AHKDRD 188
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +DPSA RYI+ + EG++F V G
Sbjct: 199 ETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKG 258
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 259 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 317
Query: 461 KW 462
++
Sbjct: 318 RF 319
>gi|147800604|emb|CAN68579.1| hypothetical protein VITISV_034891 [Vitis vinifera]
Length = 602
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/413 (25%), Positives = 183/413 (44%), Gaps = 56/413 (13%)
Query: 50 STTKRQLCKRRKIAIFFAYCGVGYQGMQKN---PGAKTIEGDLEEALFHSGAVSERDRGN 106
S K + +++K+ + Y G Y+G+Q TIEG+LE A+F +G + + + GN
Sbjct: 53 SVQKWESFRKKKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGIRDSNYGN 112
Query: 107 PRRYDWARSARTDKGVSAVGQVVSGRFCI-------DPPG--LVERLNSNLPTQIRIFGY 157
+ W RS+RTDKGV ++ ++S + I DP G L +N +LP I++F
Sbjct: 113 LHKIGWDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSI 172
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRK 217
SF+A++ CD RRY YLLP + S+ + + N+++ E E +
Sbjct: 173 LPSQRSFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFE-GEHPFQ 231
Query: 218 VIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMV 277
+ K Q + N + + K ST + + E N ++ +
Sbjct: 232 NYTIRSKYRKQFPAKQSPGNGGVFRRAKSSGEASTSEFE-----VSDGEENSGVNGVISS 286
Query: 278 ENANSESVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFC 337
+ E+ N + S V + N N+ K + E+ S KL+ + +
Sbjct: 287 DYDEGENQNSSESTSFVEHPVGSSN----------NNEKGLKEQSS-----KLVVRARWL 331
Query: 338 YGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCE 397
+G +E+ R + + +F R I + + G+D+++
Sbjct: 332 HGPDERDR--------ISASHF---------------RKIFNCSCGKLEKFLGLDYVELS 368
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
+ G+SFMLHQIRKM+G A+AV R P+ ++ +L K I +P AP L L
Sbjct: 369 ICGESFMLHQIRKMVGTAIAVKRELLPRDILTLSLTKFSRIVLPLAPSEVLIL 421
>gi|380795213|gb|AFE69482.1| tRNA pseudouridine synthase A, mitochondrial isoform 2, partial
[Macaca mulatta]
Length = 374
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 93/145 (64%), Gaps = 9/145 (6%)
Query: 53 KRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRR 109
+R +RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E + R+
Sbjct: 24 RRGKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRK 83
Query: 110 YDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
+ R ARTDKGVSA GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K
Sbjct: 84 MSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILEKINSHLPSHIRILGLKRVTGGFNSKN 141
Query: 169 FCDQRRYVYLLPVFALDSSSHRDRE 193
CD R Y YLLP FA +H+DR+
Sbjct: 142 RCDARTYCYLLPTFAF---AHKDRD 163
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 82/122 (67%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ ++PSARRYI+ + EG++F V G
Sbjct: 174 ETLQQVNRLLACYKGTHNFHNFTSQKGPQEPSARRYILEMYCEEPFVREGLEFAVIRVKG 233
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 234 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 292
Query: 461 KW 462
++
Sbjct: 293 RF 294
>gi|149063707|gb|EDM14030.1| pseudouridine synthase 1, isoform CRA_a [Rattus norvegicus]
Length = 393
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 104/184 (56%), Gaps = 12/184 (6%)
Query: 14 PSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGY 73
P P +PD R + E G D R+L KR KI + AY G GY
Sbjct: 7 PPALPSHQPD--RKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYSGKGY 63
Query: 74 QGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS 130
GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDKGVSA GQVVS
Sbjct: 64 HGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAGQVVS 123
Query: 131 GR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSH 189
+ + ID +++++NS+LP+ IRI G KRVT FN+K CD R Y Y+LP FA +H
Sbjct: 124 LKVWLID--DILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF---AH 178
Query: 190 RDRE 193
+DR+
Sbjct: 179 KDRD 182
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 193 ETLQQVNRLLGCYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 252
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 253 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 311
Query: 461 KW 462
++
Sbjct: 312 RF 313
>gi|74149634|dbj|BAE36440.1| unnamed protein product [Mus musculus]
Length = 393
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 108/188 (57%), Gaps = 14/188 (7%)
Query: 10 KLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYC 69
K+P P+L+ Q P R + E G D R+L KR KI + AY
Sbjct: 5 KVP-PALASHQ---PDRKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYS 59
Query: 70 GVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
G GY GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDKGVSA G
Sbjct: 60 GKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAG 119
Query: 127 QVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
QVVS + + ID +++++NS+LP+ IRI G KRVT FN+K CD R Y Y+LP FA
Sbjct: 120 QVVSLKVWLID--DILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF- 176
Query: 186 SSSHRDRE 193
+H+DR+
Sbjct: 177 --AHKDRD 182
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 193 ETLQQVNRLLACYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 252
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 253 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 311
Query: 461 KW 462
++
Sbjct: 312 RF 313
>gi|355564836|gb|EHH21336.1| hypothetical protein EGK_04370, partial [Macaca mulatta]
Length = 379
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 93/145 (64%), Gaps = 9/145 (6%)
Query: 53 KRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRR 109
+R +RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E + R+
Sbjct: 29 RRGKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRK 88
Query: 110 YDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
+ R ARTDKGVSA GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K
Sbjct: 89 MSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILEKINSHLPSHIRILGLKRVTGGFNSKN 146
Query: 169 FCDQRRYVYLLPVFALDSSSHRDRE 193
CD R Y YLLP FA +H+DR+
Sbjct: 147 RCDARTYCYLLPTFAF---AHKDRD 168
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 82/122 (67%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ ++PSARRYI+ + EG++F V G
Sbjct: 179 ETLQQVNRLLACYKGTHNFHNFTSQKGPQEPSARRYILEMYCEEPFVREGLEFAVIRVKG 238
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 239 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 297
Query: 461 KW 462
++
Sbjct: 298 RF 299
>gi|194043580|ref|XP_001928625.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 2
[Sus scrofa]
gi|311270525|ref|XP_003132902.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Sus
scrofa]
Length = 400
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 91/145 (62%), Gaps = 7/145 (4%)
Query: 49 DSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRG 105
D +R+L KR KI + AY G GY GMQ+N G+ KTIE DL AL SG + E
Sbjct: 47 DGEQRRKLPKR-KIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGE 105
Query: 106 NPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASF 164
+ R+ + R ARTDKGVSA GQVVS + + ID ++E++NS+LP+ IRI G KRVT F
Sbjct: 106 DMRKMSFQRCARTDKGVSAAGQVVSLKVWLID--DILEKINSHLPSHIRILGLKRVTGGF 163
Query: 165 NAKKFCDQRRYVYLLPVFALDSSSH 189
N+K CD R Y Y+LP FA H
Sbjct: 164 NSKNKCDARTYFYMLPTFAFAHKDH 188
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E +R NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 200 ETLQRVNRLLACYKGTHNFHNFTSQKGPREPSARRYILDMFCEEPFVREGMEFAVIKVKG 259
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM HQIRKM+GL VA+++ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 260 QSFMTHQIRKMVGLVVAIIKGYAPESVLERSW-GEAKVDVPKAPGLGLVLERVHFEKYNQ 318
Query: 461 KW 462
++
Sbjct: 319 RF 320
>gi|443897972|dbj|GAC75310.1| pseudouridylate synthase [Pseudozyma antarctica T-34]
Length = 649
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 94/154 (61%), Gaps = 10/154 (6%)
Query: 37 DERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHS 96
DER+ AA S + +RK+A+ F YCG+GY G+Q NPG KTIEGD+ +A +
Sbjct: 175 DERE----AASEPSGSSGDRLPKRKVAVKFGYCGIGYSGLQINPGVKTIEGDIFDAFCTA 230
Query: 97 GAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG------LVERLNSNLPT 150
GAVS+ + NP + R+ARTD+GV A G ++S + + P G LV+++NS LP
Sbjct: 231 GAVSKDNAVNPNKVGLQRAARTDRGVHAAGNLLSLKLILQPDGLQEGETLVDKVNSLLPE 290
Query: 151 QIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
IRI+G RV FNA++ CD R Y YLLP +
Sbjct: 291 FIRIWGVTRVQNGFNARQSCDSRMYEYLLPTYVF 324
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 339 GEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEV 398
E E +R I + GSHNFHNFT + D S +R++ + + +++ ++
Sbjct: 391 AETELERIRTIFAKFSGSHNFHNFTVGKEFRDRSCQRFMKTLTISPTKVIGDCEWVSIKL 450
Query: 399 VGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASY 458
GQSFMLHQIRKM+GL V V R+ A L++ +++P AP +GL L++ IF +Y
Sbjct: 451 HGQSFMLHQIRKMVGLLVLVGRSGAGMGLVDECFGP-ARVHIPKAPGLGLLLEQPIFEAY 509
Query: 459 NKK 461
N++
Sbjct: 510 NRR 512
>gi|149063709|gb|EDM14032.1| pseudouridine synthase 1, isoform CRA_c [Rattus norvegicus]
Length = 402
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 104/184 (56%), Gaps = 12/184 (6%)
Query: 14 PSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGY 73
P P +PD R + E G D R+L KR KI + AY G GY
Sbjct: 16 PPALPSHQPD--RKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYSGKGY 72
Query: 74 QGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS 130
GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDKGVSA GQVVS
Sbjct: 73 HGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAGQVVS 132
Query: 131 GR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSH 189
+ + ID +++++NS+LP+ IRI G KRVT FN+K CD R Y Y+LP FA +H
Sbjct: 133 LKVWLID--DILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF---AH 187
Query: 190 RDRE 193
+DR+
Sbjct: 188 KDRD 191
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 202 ETLQQVNRLLGCYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 261
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 262 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 320
Query: 461 KW 462
++
Sbjct: 321 RF 322
>gi|70906472|ref|NP_001020733.1| tRNA pseudouridine synthase A, mitochondrial isoform 3 [Mus
musculus]
gi|4455033|gb|AAD21041.1| pseudouridine synthase 1 [Mus musculus]
gi|11464734|gb|AAG35308.1| pseudouridine synthase 1 [Mus musculus]
gi|148688058|gb|EDL20005.1| pseudouridine synthase 1, isoform CRA_c [Mus musculus]
Length = 393
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 108/188 (57%), Gaps = 14/188 (7%)
Query: 10 KLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYC 69
K+P P+L+ Q P R + E G D R+L KR KI + AY
Sbjct: 5 KVP-PALASHQ---PDRKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYS 59
Query: 70 GVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
G GY GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDKGVSA G
Sbjct: 60 GKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAG 119
Query: 127 QVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
QVVS + + ID +++++NS+LP+ IRI G KRVT FN+K CD R Y Y+LP FA
Sbjct: 120 QVVSLKVWLID--DILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF- 176
Query: 186 SSSHRDRE 193
+H+DR+
Sbjct: 177 --AHKDRD 182
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 193 ETLQQVNRLLACYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 252
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 253 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 311
Query: 461 KW 462
++
Sbjct: 312 RF 313
>gi|50548607|ref|XP_501773.1| YALI0C12749p [Yarrowia lipolytica]
gi|74635069|sp|Q6CC39.1|PUS1_YARLI RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|49647640|emb|CAG82083.1| YALI0C12749p [Yarrowia lipolytica CLIB122]
Length = 528
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 83/126 (65%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A YCG GY GMQ NP KTIEGD+ +A +GA+S+ + +P++ + R+ART
Sbjct: 84 KRKVACMIGYCGTGYHGMQLNPPQKTIEGDIFQAFVKAGAISQNNADDPKKSAFMRAART 143
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ +VE++NS+LP Q+R++G R +F +K C R Y YL
Sbjct: 144 DKGVHAAGNVISLKMIIEDENIVEKINSHLPEQLRVWGVSRTNKAFECRKLCSSRVYEYL 203
Query: 179 LPVFAL 184
+P ++
Sbjct: 204 MPTYSF 209
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 6/153 (3%)
Query: 310 DSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAE 369
DSK D+ + + ++V + F E + ILK Y G+HNFHNFT +
Sbjct: 279 DSKTDAATLEKIKAVERRHR----EEFRISGERLAKIREILKIYEGTHNFHNFTLGKAFK 334
Query: 370 DPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVR-NCAPQSLI 428
DPSA R + S ++G +++ ++ GQSFMLHQIRKMI + VR N PQ LI
Sbjct: 335 DPSAMRTMKSLTCSDPFLIDGTEWVSIKIHGQSFMLHQIRKMISMVALSVRCNADPQKLI 394
Query: 429 ETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
+K IN+P AP +GL L+ ++ SYNKK
Sbjct: 395 PQTFEK-ARINIPKAPALGLLLERPVYDSYNKK 426
>gi|395513517|ref|XP_003760970.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial
[Sarcophilus harrisii]
Length = 410
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 87/135 (64%), Gaps = 6/135 (4%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E + ++ + R
Sbjct: 65 KRKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVSALVQSGCIPENHGEDMKKMSFQRC 124
Query: 116 ARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
ARTDKGVSA GQ+VS + + ID ++E++NS+LP+ IRI G KRVT SFN+K CD R
Sbjct: 125 ARTDKGVSAAGQIVSLKVWLID--NILEKINSHLPSHIRILGLKRVTGSFNSKNRCDART 182
Query: 175 YVYLLPVFALDSSSH 189
Y Y+LP FA H
Sbjct: 183 YFYMLPTFAFAHKDH 197
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 84/122 (68%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ N++L Y G+HNFHNFT++ ++PSARRYI+ ++ EG++F ++ G
Sbjct: 209 ETLEKVNQLLAGYKGTHNFHNFTSQKGPKEPSARRYIMEMHCEAPFMREGMEFAVIKIKG 268
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKMIGL +AV++ P+S++E + ++ +++P AP +GL L+ F YN+
Sbjct: 269 QSFMMHQIRKMIGLVIAVLKGYVPESVMERSWGEE-KVDIPKAPGLGLVLERVHFEQYNR 327
Query: 461 KW 462
++
Sbjct: 328 RF 329
>gi|334326921|ref|XP_001378494.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Monodelphis domestica]
Length = 516
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 87/135 (64%), Gaps = 6/135 (4%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E + R+ + R
Sbjct: 99 KRKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVFALVQSGCIPENHGEDMRKMAFQRC 158
Query: 116 ARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
ARTDKGVSA GQ+VS + + ID ++E++NS+LP+ IRI G KRVT SFN+K CD R
Sbjct: 159 ARTDKGVSAAGQIVSLKVWLID--NILEKINSHLPSHIRILGLKRVTGSFNSKNRCDART 216
Query: 175 YVYLLPVFALDSSSH 189
Y Y+LP FA H
Sbjct: 217 YFYMLPTFAFAHKDH 231
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 84/122 (68%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ N++L Y G+H+FHNFT++ ++PSARRYI+ ++ EG++F +V G
Sbjct: 243 ETLEKVNQLLASYKGTHSFHNFTSQKGPKEPSARRYIMEMHCEAPFVREGMEFAVIKVKG 302
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL +A+++ P+S++E + ++ +++P AP +GL L+ F YN+
Sbjct: 303 QSFMMHQIRKMVGLVIAIMKGYVPESVMERSWGEE-KVDIPKAPGLGLVLERVHFEQYNR 361
Query: 461 KW 462
++
Sbjct: 362 RF 363
>gi|148688059|gb|EDL20006.1| pseudouridine synthase 1, isoform CRA_d [Mus musculus]
Length = 402
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 108/188 (57%), Gaps = 14/188 (7%)
Query: 10 KLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYC 69
K+P P+L+ Q P R + E G D R+L KR KI + AY
Sbjct: 14 KVP-PALASHQ---PDRKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYS 68
Query: 70 GVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
G GY GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDKGVSA G
Sbjct: 69 GKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAG 128
Query: 127 QVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
QVVS + + ID +++++NS+LP+ IRI G KRVT FN+K CD R Y Y+LP FA
Sbjct: 129 QVVSLKVWLID--DILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF- 185
Query: 186 SSSHRDRE 193
+H+DR+
Sbjct: 186 --AHKDRD 191
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 202 ETLQQVNRLLACYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 261
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 262 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 320
Query: 461 KW 462
++
Sbjct: 321 RF 322
>gi|395840212|ref|XP_003792958.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Otolemur
garnettii]
Length = 430
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 101/167 (60%), Gaps = 10/167 (5%)
Query: 31 ATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEG 87
T T +D G++ + +L KR KI + AY G GY GMQ+N G+ KTIE
Sbjct: 59 GTRTWEDSEHQAKKLRGSEEEPRPRLPKR-KIVLLVAYAGKGYHGMQRNVGSSQFKTIED 117
Query: 88 DLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNS 146
DL AL SG + E + R+ + R ARTDKGVSA GQVVS + + ID ++E++NS
Sbjct: 118 DLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLID--DILEKINS 175
Query: 147 NLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 193
+LP+ IRI G KRVT FN+K CD R Y Y+LP FA +H+DR+
Sbjct: 176 HLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF---AHKDRD 219
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E +R NR+L Y G+HNFHNFT++ +PSA+RYI+ + EG++F +V G
Sbjct: 230 ETLQRVNRLLACYKGTHNFHNFTSQKGPREPSAQRYILEMFCEEPFEREGLEFAVIKVKG 289
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 290 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 348
Query: 461 K 461
+
Sbjct: 349 R 349
>gi|388856578|emb|CCF49884.1| related to PUS1-pseudouridine synthase 1 [Ustilago hordei]
Length = 615
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 87/132 (65%), Gaps = 6/132 (4%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ F YCG+GY G+Q NPG KTIEGD+ A + GAVS + NP + R+ART
Sbjct: 110 KRKVAVKFGYCGIGYSGLQINPGVKTIEGDMFAAFCNVGAVSADNAVNPNKVGLQRAART 169
Query: 119 DKGVSAVGQVVSGRFCIDP----PG--LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
D+GV A G +VS + ++P PG LV+++NS LP IRI+G RV +FNA++ CD
Sbjct: 170 DRGVHAAGNLVSLKLILEPCGLKPGETLVDKVNSILPDFIRIWGITRVQNAFNARQSCDS 229
Query: 173 RRYVYLLPVFAL 184
R Y YLLP +
Sbjct: 230 RMYEYLLPTYVF 241
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
R I Y+GSHNFHNFT + D S +R++ ++ +++L + GQSFM
Sbjct: 314 RIRSIFARYLGSHNFHNFTVGKEFRDRSCQRFMKELSISDPKLIQDVEWLSIKFHGQSFM 373
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKD 464
LHQIRKMIGL V + R A Q L+E +++P AP +GL L+ IF +YN + ++
Sbjct: 374 LHQIRKMIGLLVLIGRTGAAQGLVEECF-GPARVHIPKAPGLGLLLERPIFDAYNSRIRN 432
Query: 465 SHEE 468
S+++
Sbjct: 433 SNDK 436
>gi|348550791|ref|XP_003461214.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Cavia
porcellus]
Length = 425
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 92/139 (66%), Gaps = 9/139 (6%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RKI + AY G GY GMQ+N G+ KTIE DL AL +G + E + R+ + R
Sbjct: 79 KRKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVSALVRAGCIPENHGEDMRKMSFQRC 138
Query: 116 ARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
ARTDKGVSA GQVVS + + ID GL++++NS+LP+ IR+ G KRVT FN+K CD R
Sbjct: 139 ARTDKGVSAAGQVVSLKVWLID--GLLDKINSHLPSHIRVLGLKRVTGGFNSKNRCDART 196
Query: 175 YVYLLPVFALDSSSHRDRE 193
Y Y+LP FA +H+DR+
Sbjct: 197 YFYMLPTFAF---AHKDRD 212
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRY++ + EG++F +V G
Sbjct: 223 ETLQQVNRLLACYKGTHNFHNFTSQKGPREPSARRYVLEMYCEPPFEREGLEFAVIKVKG 282
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F +YN+
Sbjct: 283 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFETYNQ 341
Query: 461 K 461
+
Sbjct: 342 R 342
>gi|71022667|ref|XP_761563.1| hypothetical protein UM05416.1 [Ustilago maydis 521]
gi|46101432|gb|EAK86665.1| hypothetical protein UM05416.1 [Ustilago maydis 521]
Length = 615
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 91/148 (61%), Gaps = 8/148 (5%)
Query: 43 PAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSER 102
P+ A ++T R +RK+A+ F YCG+GY G+Q NPG KTIEGD+ +A +GAVS
Sbjct: 106 PSTCEASASTDR--LPKRKVAVKFGYCGIGYSGLQINPGVKTIEGDIFDAFCTAGAVSSD 163
Query: 103 DRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG------LVERLNSNLPTQIRIFG 156
+ NP + R+ARTD+GV A G ++S + + P G LV+++N LP IRI+G
Sbjct: 164 NAVNPNKVGLQRAARTDRGVHAAGNLLSLKLILQPQGLKPGETLVDKVNELLPPFIRIWG 223
Query: 157 YKRVTASFNAKKFCDQRRYVYLLPVFAL 184
RV FNA++ CD R Y YLLP +
Sbjct: 224 VTRVQNGFNARQSCDSRMYEYLLPTYVF 251
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Query: 349 ILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQI 408
I ++GSHNF+NFT + D S +R++ ++G+++L + GQSFMLHQI
Sbjct: 328 IFNRFLGSHNFYNFTVGKEFRDRSCQRFMKKLTISEPKMIQGVEWLSIKFHGQSFMLHQI 387
Query: 409 RKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHE 467
RKMIGL V + R A + L++ +++P AP +GL L+ IF +YN + +++++
Sbjct: 388 RKMIGLLVLIGRTGAAERLVDECF-GPARVHIPKAPGLGLLLEMPIFDAYNTRIRNNND 445
>gi|70906466|ref|NP_001020734.1| tRNA pseudouridine synthase A, mitochondrial [Rattus norvegicus]
gi|182676393|sp|Q4KM92.2|TRUA_RAT RecName: Full=tRNA pseudouridine synthase A, mitochondrial;
AltName: Full=tRNA pseudouridine(38-40) synthase;
AltName: Full=tRNA pseudouridylate synthase I; AltName:
Full=tRNA-uridine isomerase I; Flags: Precursor
gi|149063708|gb|EDM14031.1| pseudouridine synthase 1, isoform CRA_b [Rattus norvegicus]
gi|171847186|gb|AAI61821.1| Pseudouridylate synthase 1 [Rattus norvegicus]
Length = 423
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 104/184 (56%), Gaps = 12/184 (6%)
Query: 14 PSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGY 73
P P +PD R + E G D R+L KR KI + AY G GY
Sbjct: 37 PPALPSHQPD--RKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYSGKGY 93
Query: 74 QGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS 130
GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDKGVSA GQVVS
Sbjct: 94 HGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAGQVVS 153
Query: 131 GR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSH 189
+ + ID +++++NS+LP+ IRI G KRVT FN+K CD R Y Y+LP FA +H
Sbjct: 154 LKVWLID--DILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF---AH 208
Query: 190 RDRE 193
+DR+
Sbjct: 209 KDRD 212
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 223 ETLQQVNRLLGCYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 282
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 283 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 341
Query: 461 K 461
+
Sbjct: 342 R 342
>gi|225434389|ref|XP_002276856.1| PREDICTED: putative tRNA pseudouridine synthase-like [Vitis
vinifera]
Length = 564
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/413 (25%), Positives = 182/413 (44%), Gaps = 56/413 (13%)
Query: 50 STTKRQLCKRRKIAIFFAYCGVGYQGMQKN---PGAKTIEGDLEEALFHSGAVSERDRGN 106
S K + +++K+ + Y G Y+G+Q TIEG+LE A+F +G + + + GN
Sbjct: 53 SVQKWESFRKKKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGIRDSNYGN 112
Query: 107 PRRYDWARSARTDKGVSAVGQVVSGRFCI-------DPPG--LVERLNSNLPTQIRIFGY 157
+ W RS+RTDKGV ++ ++S + I DP G L +N +LP I++F
Sbjct: 113 LHKIGWDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSI 172
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRK 217
SF+A++ CD RRY YLLP + S+ + + N+++ E E +
Sbjct: 173 LPSQRSFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFE-GEHPFQ 231
Query: 218 VIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMV 277
+ K Q + N + + K ST + + E N I+ +
Sbjct: 232 NYTIRSKYRKQFPAKQSPGNGGVFRRAKSSGEASTSEFE-----VSDGEENSGINGVISS 286
Query: 278 ENANSESVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFC 337
+ E+ N + S V + N N+ K + E+ KL+ + +
Sbjct: 287 DYDEGENQNSSESTSFVEHPVGSSN----------NNEKGLKEQ-----SPKLVVRARWL 331
Query: 338 YGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCE 397
+G +E+ R + + +F R I + + G+D+++
Sbjct: 332 HGPDERDR--------ISASHF---------------RKIFNCSCGKLEKFLGLDYVELS 368
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
+ G+SFMLHQIRKM+G A+AV R P+ ++ +L K I +P AP L L
Sbjct: 369 ICGESFMLHQIRKMVGTAIAVKRELLPRDILTLSLTKFSRIVLPLAPSEVLIL 421
>gi|109099290|ref|XP_001113470.1| PREDICTED: tRNA pseudouridine synthase A-like [Macaca mulatta]
Length = 483
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 106/191 (55%), Gaps = 10/191 (5%)
Query: 7 NTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFF 66
N E P+ S P+ A D E + D + +L KR KI +
Sbjct: 88 NAEPPPAGSARPQDRRSRSCWAGGARVWEDGEHPAKKVKSDGDEERRGKLPKR-KIVLLM 146
Query: 67 AYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
AY G GY GMQ+N G+ KTIE DL AL SG + E + R+ + R ARTDKGVS
Sbjct: 147 AYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVS 206
Query: 124 AVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVF 182
A GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K CD R Y YLLP F
Sbjct: 207 AAGQVVSLKVWLID--DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTF 264
Query: 183 ALDSSSHRDRE 193
A +H+DR+
Sbjct: 265 AF---AHKDRD 272
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 82/122 (67%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ ++PSARRYI+ + EG++F V G
Sbjct: 283 ETLQQVNRLLACYKGTHNFHNFTSQKGPQEPSARRYILEMYCEEPFVREGLEFAVIRVKG 342
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 343 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 401
Query: 461 KW 462
++
Sbjct: 402 RF 403
>gi|281340805|gb|EFB16389.1| hypothetical protein PANDA_012338 [Ailuropoda melanoleuca]
Length = 359
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 94/158 (59%), Gaps = 7/158 (4%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEA 92
D E+ + D+ R+L KR KI + AY G GY GMQ+N G+ KTIE DL A
Sbjct: 5 DAEQQAKKLKSSPDAEPHRKLPKR-KIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSA 63
Query: 93 LFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQ 151
L SG + E + R+ + R ARTDKGVSA GQVVS + + ID ++E++NS+LP
Sbjct: 64 LVQSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLID--DILEKINSHLPPH 121
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSH 189
IRI G KRVT FN+K CD R Y Y+LP FA H
Sbjct: 122 IRILGLKRVTGGFNSKNKCDARTYFYMLPTFAFAHKDH 159
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E +R N +L Y G+HNFHNFT++ + SARRYI+ + EG++F +V G
Sbjct: 171 ETLRRVNGLLACYRGTHNFHNFTSQKGPHEASARRYILDMFCEEPFVREGMEFAVIKVKG 230
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM HQIRKM+GL VAVV+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 231 QSFMTHQIRKMVGLVVAVVKGYAPESVLERSW-GEAKVDVPKAPGLGLVLERVHFEKYNQ 289
Query: 461 KW 462
++
Sbjct: 290 RF 291
>gi|26354378|dbj|BAC40817.1| unnamed protein product [Mus musculus]
Length = 393
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 96/152 (63%), Gaps = 10/152 (6%)
Query: 46 AGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSER 102
G D R+L KR KI + AY G GY GMQ+N G+ +TIE DL AL +G + E
Sbjct: 37 GGEDEEPPRKLPKR-KIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPEN 95
Query: 103 DRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVT 161
+ R+ + R ARTDKGVSA GQVVS + + ID +++++NS+LP+ IRI G KRVT
Sbjct: 96 HGTDMRKMSFQRCARTDKGVSAAGQVVSLKVWLID--DILDKINSHLPSHIRILGLKRVT 153
Query: 162 ASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 193
FN+K CD R Y Y+LP FA +H+DR+
Sbjct: 154 GGFNSKNKCDARTYCYMLPTFAF---AHKDRD 182
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 193 ETLQQVNRLLACYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 252
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 253 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 311
Query: 461 KW 462
++
Sbjct: 312 RF 313
>gi|112180395|gb|AAH21446.2| Pseudouridine synthase 1 [Mus musculus]
Length = 423
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 108/188 (57%), Gaps = 14/188 (7%)
Query: 10 KLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYC 69
K+P P+L+ Q P R + E G D R+L KR KI + AY
Sbjct: 35 KVP-PALASHQ---PDRKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYS 89
Query: 70 GVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
G GY GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDKGVSA G
Sbjct: 90 GKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAG 149
Query: 127 QVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
QVVS + + ID +++++NS+LP+ IRI G KRVT FN+K CD R Y Y+LP FA
Sbjct: 150 QVVSLKVWLID--DILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF- 206
Query: 186 SSSHRDRE 193
+H+DR+
Sbjct: 207 --AHKDRD 212
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 223 ETLQQVNRLLACYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 282
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 283 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 341
Query: 461 K 461
+
Sbjct: 342 R 342
>gi|301775629|ref|XP_002923235.1| PREDICTED: tRNA pseudouridine synthase A-like [Ailuropoda
melanoleuca]
Length = 426
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 90/145 (62%), Gaps = 7/145 (4%)
Query: 49 DSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRG 105
D+ R+L KR KI + AY G GY GMQ+N G+ KTIE DL AL SG + E
Sbjct: 79 DAEPHRKLPKR-KIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGE 137
Query: 106 NPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASF 164
+ R+ + R ARTDKGVSA GQVVS + + ID ++E++NS+LP IRI G KRVT F
Sbjct: 138 DMRKMSFQRCARTDKGVSAAGQVVSLKVWLID--DILEKINSHLPPHIRILGLKRVTGGF 195
Query: 165 NAKKFCDQRRYVYLLPVFALDSSSH 189
N+K CD R Y Y+LP FA H
Sbjct: 196 NSKNKCDARTYFYMLPTFAFAHKDH 220
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E +R N +L Y G+HNFHNFT++ + SARRYI+ + EG++F +V G
Sbjct: 232 ETLRRVNGLLACYRGTHNFHNFTSQKGPHEASARRYILDMFCEEPFVREGMEFAVIKVKG 291
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM HQIRKM+GL VAVV+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 292 QSFMTHQIRKMVGLVVAVVKGYAPESVLERSW-GEAKVDVPKAPGLGLVLERVHFEKYNQ 350
Query: 461 KW 462
++
Sbjct: 351 RF 352
>gi|70906470|ref|NP_062674.2| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Mus
musculus]
gi|114152896|sp|Q9WU56.2|TRUA_MOUSE RecName: Full=tRNA pseudouridine synthase A, mitochondrial;
AltName: Full=tRNA pseudouridine(38-40) synthase;
AltName: Full=tRNA pseudouridylate synthase I; AltName:
Full=tRNA-uridine isomerase I; Flags: Precursor
gi|112180429|gb|AAH34359.2| Pseudouridine synthase 1 [Mus musculus]
gi|148688056|gb|EDL20003.1| pseudouridine synthase 1, isoform CRA_a [Mus musculus]
Length = 423
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 108/188 (57%), Gaps = 14/188 (7%)
Query: 10 KLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYC 69
K+P P+L+ Q P R + E G D R+L KR KI + AY
Sbjct: 35 KVP-PALASHQ---PDRKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYS 89
Query: 70 GVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
G GY GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDKGVSA G
Sbjct: 90 GKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAG 149
Query: 127 QVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
QVVS + + ID +++++NS+LP+ IRI G KRVT FN+K CD R Y Y+LP FA
Sbjct: 150 QVVSLKVWLID--DILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF- 206
Query: 186 SSSHRDRE 193
+H+DR+
Sbjct: 207 --AHKDRD 212
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 223 ETLQQVNRLLACYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 282
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 283 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 341
Query: 461 K 461
+
Sbjct: 342 R 342
>gi|385304790|gb|EIF48795.1| trna pseudouridine synthase [Dekkera bruxellensis AWRI1499]
Length = 379
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 85/126 (67%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A YCG GY GMQ NP KTIEGDL +A+ +GA+S+ + + ++ + R+ART
Sbjct: 32 KKKVACLIGYCGAGYHGMQINPPNKTIEGDLFKAMVEAGAISKNNSNDLKKSGFMRAART 91
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + ++ +VE++N LP QIR++GY+RV SF+ +K C R Y YL
Sbjct: 92 DKGVHAAGNVISLKMIVEDEDVVEKINQALPEQIRVWGYQRVNKSFDCRKMCSSRIYEYL 151
Query: 179 LPVFAL 184
+P ++
Sbjct: 152 MPTYSF 157
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFML 405
F +K Y GSHNFHNFT DPSA+RY+ + + ++++ ++ GQSFML
Sbjct: 253 FRDTMKLYEGSHNFHNFTNGKDFRDPSAKRYMKNITVSEPFVIGNLEWVSIKIHGQSFML 312
Query: 406 HQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
HQIRKMIGLA +VR P I + + +N+P AP +GL L+ ++ +N+K
Sbjct: 313 HQIRKMIGLASLIVRTGCPIDKIRESFRMP-KVNIPKAPALGLLLERPVYDGFNEK 367
>gi|154300700|ref|XP_001550765.1| hypothetical protein BC1G_10938 [Botryotinia fuckeliana B05.10]
Length = 631
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 83/126 (65%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+ K+A+ Y G GY+G+Q N KTIEGD+ +A +GA+S+ + +P++ R ART
Sbjct: 97 KHKVAVMIGYAGTGYKGLQINTKEKTIEGDMFKAFVAAGAISKANANDPKKSALIRCART 156
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ P +VE +NS+LP QIR++G +R T SFN + CD R Y YL
Sbjct: 157 DKGVHAAGNVLSLKLIIEDPKVVENINSHLPDQIRVWGIERTTGSFNCYQMCDSRWYEYL 216
Query: 179 LPVFAL 184
+P ++
Sbjct: 217 IPTYSF 222
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCE 397
E ++R L YVG++NFHN+T +D S++R+I SF G ++ + ++L +
Sbjct: 419 ESRRERVQEALNQYVGTYNFHNYTILKSFKDASSKRHIKSFKIGTQPII-IHDTEWLSLK 477
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFAS 457
V GQSFM+HQIRKM+ +A VVR +P LI+ I++P AP +GL L+ +F +
Sbjct: 478 VHGQSFMMHQIRKMVAMAALVVRCASPMELIKETYTA-AKISIPKAPSLGLLLEAPVFHN 536
Query: 458 YNKK 461
YN+K
Sbjct: 537 YNEK 540
>gi|347841293|emb|CCD55865.1| similar to tRNA pseudouridine synthase [Botryotinia fuckeliana]
Length = 631
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 83/126 (65%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+ K+A+ Y G GY+G+Q N KTIEGD+ +A +GA+S+ + +P++ R ART
Sbjct: 97 KHKVAVMIGYAGTGYKGLQINTKEKTIEGDMFKAFVAAGAISKANANDPKKSALIRCART 156
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ P +VE +NS+LP QIR++G +R T SFN + CD R Y YL
Sbjct: 157 DKGVHAAGNVLSLKLIIEDPKVVENINSHLPDQIRVWGIERTTGSFNCYQMCDSRWYEYL 216
Query: 179 LPVFAL 184
+P ++
Sbjct: 217 IPTYSF 222
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCE 397
E ++R L YVG++NFHN+T +D S++R+I SF GA ++ + ++L +
Sbjct: 419 ESRRERVQEALNQYVGTYNFHNYTILKSFKDASSKRHIKSFKIGAQPII-IHDTEWLSLK 477
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFAS 457
V GQSFM+HQIRKM+ +A VVR +P LI+ I++P AP +GL L+ +F +
Sbjct: 478 VHGQSFMMHQIRKMVAMAALVVRCASPMELIKETYTA-AKISIPKAPSLGLLLEAPVFHN 536
Query: 458 YNKK 461
YN+K
Sbjct: 537 YNEK 540
>gi|301604562|ref|XP_002931922.1| PREDICTED: tRNA pseudouridine synthase A [Xenopus (Silurana)
tropicalis]
Length = 399
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 91/140 (65%), Gaps = 9/140 (6%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RK+ + AY G GY GMQ+N G+ KTIE +L +AL SG + + + ++ + R
Sbjct: 54 KRKVVLLMAYSGKGYHGMQRNVGSSQFKTIEDELVQALVLSGCIPDNHAEDMKKMSFQRC 113
Query: 116 ARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
ARTDKGVSA GQVVS + + ID +VE++N NLP+ IRI G KRVT FN+K CD R
Sbjct: 114 ARTDKGVSAAGQVVSLKIWLID--NVVEKINENLPSHIRILGLKRVTGRFNSKNSCDART 171
Query: 175 YVYLLPVFALDSSSHRDRES 194
Y Y LP FA SH+D+E+
Sbjct: 172 YSYTLPTFAF---SHKDKEA 188
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLK 395
F +E R N +L Y G+ NFHNFT++ DPSA+RYI+ + G++
Sbjct: 193 FRLSQETLNRVNELLALYKGTRNFHNFTSQKGPRDPSAKRYIMEMHCEPPFQQGGLELAV 252
Query: 396 CEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIF 455
+V GQSFM+HQIRKMIGL +AVV+ AP S+IE + ++ +++P AP +GL L+ F
Sbjct: 253 IKVKGQSFMMHQIRKMIGLVIAVVKGFAPTSIIERSWGEE-KVDIPKAPGLGLVLERVHF 311
Query: 456 ASYNKKW 462
YN+++
Sbjct: 312 EKYNRRF 318
>gi|355714583|gb|AES05050.1| pseudouridylate synthase 1 [Mustela putorius furo]
Length = 353
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 90/148 (60%), Gaps = 7/148 (4%)
Query: 46 AGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSER 102
G +R+L KR KI + AY G GY GMQ+N G+ KTIE DL AL SG + E
Sbjct: 12 GGPGGELRRKLPKR-KIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPEN 70
Query: 103 DRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVT 161
+ R+ + R ARTDKGVSA GQVVS + + ID ++E++NS+LP IRI G KRVT
Sbjct: 71 HGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLID--DILEKINSHLPPHIRILGLKRVT 128
Query: 162 ASFNAKKFCDQRRYVYLLPVFALDSSSH 189
FN+K CD R Y Y+LP FA H
Sbjct: 129 GGFNSKNKCDARTYFYMLPTFAFAHKDH 156
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
R NR+L Y G+HNFHNFT++ + SARRY++ + +G++F +V GQSFM
Sbjct: 172 RVNRLLACYKGTHNFHNFTSQKGPREASARRYVLDMFCEEPFVRDGMEFAVIKVKGQSFM 231
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+++
Sbjct: 232 THQIRKMVGLVVAIVKGYAPESVLERSW-GEAKVDVPKAPGLGLVLERVHFEKYNQRF 288
>gi|296412959|ref|XP_002836186.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629994|emb|CAZ80377.1| unnamed protein product [Tuber melanosporum]
Length = 454
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 81/122 (66%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ YCG GY+GMQ NP K+IE DL EA +GA+S+ + +P++ R ART
Sbjct: 90 KKKVAVLIGYCGTGYRGMQLNPPHKSIESDLFEAFVQAGAISKANSDDPKKSSLVRCART 149
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ P + E++NS LP QIR++G R SF++ CD RRY YL
Sbjct: 150 DKGVHAAGNVISLKLIIEDPDITEKINSYLPEQIRVWGIVRTVGSFSSYHQCDSRRYEYL 209
Query: 179 LP 180
+P
Sbjct: 210 VP 211
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 74/121 (61%), Gaps = 4/121 (3%)
Query: 344 KRFNRI---LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
KR R+ + Y G+HNFHNFT + DPS++R+I SF + + ++L V G
Sbjct: 234 KRLQRVREGFRSYEGTHNFHNFTIQKTFNDPSSKRFIKSFEVLDPIIINNTEWLSLRVHG 293
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+G+ + VVR P I+ A V +++P AP +GL L+ +F +YN+
Sbjct: 294 QSFMMHQIRKMVGMVMMVVRTGCPLERIKEACGPRV-VSIPKAPSLGLLLESPVFDAYNR 352
Query: 461 K 461
K
Sbjct: 353 K 353
>gi|291227559|ref|XP_002733751.1| PREDICTED: PseudoUridine Synthase family member (pus-1)-like
[Saccoglossus kowalevskii]
Length = 320
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 84/129 (65%), Gaps = 1/129 (0%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+ + +Y G GY GMQ+N G +TIEGDL +A+ +GAV + P++ + R ART
Sbjct: 55 KRKVVLLLSYSGKGYMGMQRNKGVETIEGDLIKAIVTAGAVPQSHADIPQKMQFQRCART 114
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGVSAV QVVS + + VE++N++LP IR+ YKR T FNAK C R Y YL
Sbjct: 115 DKGVSAVRQVVSLKMML-VDNAVEQINNSLPPSIRVITYKRTTGGFNAKNTCSHRTYSYL 173
Query: 179 LPVFALDSS 187
+P FAL S+
Sbjct: 174 MPTFALSSN 182
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVV 399
+E ++ +L Y G+HNFHNFT+ + SA R++ G++F+ ++
Sbjct: 191 DEVHQKAQDLLNCYKGTHNFHNFTSGKAFTEQSAMRFMRELNVSQAFVRCGLEFVVITII 250
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLD-----ECI 454
GQSFM+HQIRKMIGL +A++R AP+S ++ + +++P AP +GL L+ C
Sbjct: 251 GQSFMIHQIRKMIGLVIAIIRGVAPKSTLDKCWEAG-KMDIPKAPSLGLMLENVPEMSCN 309
Query: 455 FASYNKKWKDS 465
F N +D+
Sbjct: 310 FMIGNSYMRDA 320
>gi|354479118|ref|XP_003501760.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 2
[Cricetulus griseus]
Length = 393
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 95/149 (63%), Gaps = 10/149 (6%)
Query: 49 DSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRG 105
D R+L KR KI + AY G GY GMQ+N G+ +TIE DL AL +G + E
Sbjct: 40 DEEAPRKLPKR-KIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGT 98
Query: 106 NPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASF 164
+ R+ + R ARTDKGVSA GQVVS + + ID +++++NS+LP+ IRI G KRVT F
Sbjct: 99 DMRKMSFQRCARTDKGVSAAGQVVSLKVWLID--DILDKINSHLPSNIRILGLKRVTGGF 156
Query: 165 NAKKFCDQRRYVYLLPVFALDSSSHRDRE 193
N+K CD R Y Y+LP FA +H+DR+
Sbjct: 157 NSKNKCDARTYCYMLPTFAF---AHKDRD 182
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 193 ETLEQVNRLLACYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 252
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 253 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 311
Query: 461 KW 462
++
Sbjct: 312 RF 313
>gi|194697948|gb|ACF83058.1| unknown [Zea mays]
gi|414866704|tpg|DAA45261.1| TPA: hypothetical protein ZEAMMB73_241728 [Zea mays]
Length = 516
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 123/466 (26%), Positives = 195/466 (41%), Gaps = 102/466 (21%)
Query: 12 PSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGV 71
P+PSLSP TS +D + + +++++ + Y G
Sbjct: 51 PTPSLSP-----------PVTSAND-----------GGGGMRWESARKKRVVLRIGYVGT 88
Query: 72 GYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQV 128
Y+G+QK TIE LE A+F SG + E + G ++ W RS+RTDKGV ++ +
Sbjct: 89 DYRGLQKQQELGVDSTIESVLESAIFKSGGILESNYGKLQKIGWERSSRTDKGVHSLATM 148
Query: 129 VSGRFCI-------DPPG--LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
+S + I DP G L +NSNLP +R+F SF+ ++ C R Y YLL
Sbjct: 149 ISLKMEIPDRAWEDDPDGIALASFINSNLPDNVRVFSILPAQRSFDVRRECLYREYFYLL 208
Query: 180 PVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENAS 239
P + E + L N+++K G N +
Sbjct: 209 PAEIIGIKDDYSSEEMQEHLSEFNKILK----------------------GFEGNHPFHN 246
Query: 240 LNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQ 299
++ K V++ RH + + K++S ++T + +SE
Sbjct: 247 YTARAKYRKVLA----GRHRRAKGASSALKSMS-------------SDTGMAESSSEEST 289
Query: 300 NENTDLSLDLDSKNDSKVMAEERSVNG-----EEKLLKGSGFCYGEEEKKRFNRILKHYV 354
+ + D L++ S DS + E+ VNG E++L + + + +E R N
Sbjct: 290 SPDHDEDLNISSIFDSGI-PEDTRVNGILKLSEDRLQIQARWLHEPDESDRLN------- 341
Query: 355 GSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGL 414
SH R II+ + GI F++ + G SFMLHQIRKM+G
Sbjct: 342 ASHF----------------RDIITCSCGDLQTSSGIQFVELTICGVSFMLHQIRKMVGT 385
Query: 415 AVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
AV V R P+ +IE +L K I +P AP L L + F + +K
Sbjct: 386 AVTVKRGLLPRDIIELSLAKFSRIVLPIAPSEVLVLKDNSFCTKSK 431
>gi|390356993|ref|XP_796203.3| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
isoform 2 [Strongylocentrotus purpuratus]
Length = 510
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 86/139 (61%), Gaps = 4/139 (2%)
Query: 47 GADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGN 106
G+D + +L KR K+AI +Y G Y GMQ+NPG +TIE DL AL SGA+ E N
Sbjct: 75 GSDGPKRSKLLKR-KVAILLSYAGANYVGMQRNPGVQTIEEDLVNALVKSGAIPEDCGRN 133
Query: 107 PRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFN 165
+ + R ARTDKGVSA GQVVS + +D L+ER+N +LP IR+ G R T FN
Sbjct: 134 MNKMSFQRCARTDKGVSAAGQVVSLKVLMLD--NLMERINEHLPPVIRVMGVTRTTGGFN 191
Query: 166 AKKFCDQRRYVYLLPVFAL 184
K C+ R Y+YL+P FA
Sbjct: 192 CKNNCEFRTYMYLIPTFAF 210
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIR 409
LK Y+G+HNFHNFT+ DPSA RYI F + +G++F +V GQSFMLHQIR
Sbjct: 235 LKKYIGTHNFHNFTSGKAFTDPSANRYIKEFTCEKGFVDDGMEFAVIKVKGQSFMLHQIR 294
Query: 410 KMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
KM+GL +AVVR P S +E A Q + +++P AP +GL L+ + YNK+W
Sbjct: 295 KMLGLVLAVVRGLTPPSTVERAFQ-EPKLDIPRAPGLGLVLEAVHYDCYNKRW 346
>gi|390356991|ref|XP_003728903.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
isoform 1 [Strongylocentrotus purpuratus]
Length = 512
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 86/139 (61%), Gaps = 4/139 (2%)
Query: 47 GADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGN 106
G+D + +L KR K+AI +Y G Y GMQ+NPG +TIE DL AL SGA+ E N
Sbjct: 77 GSDGPKRSKLLKR-KVAILLSYAGANYVGMQRNPGVQTIEEDLVNALVKSGAIPEDCGRN 135
Query: 107 PRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFN 165
+ + R ARTDKGVSA GQVVS + +D L+ER+N +LP IR+ G R T FN
Sbjct: 136 MNKMSFQRCARTDKGVSAAGQVVSLKVLMLD--NLMERINEHLPPVIRVMGVTRTTGGFN 193
Query: 166 AKKFCDQRRYVYLLPVFAL 184
K C+ R Y+YL+P FA
Sbjct: 194 CKNNCEFRTYMYLIPTFAF 212
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIR 409
LK Y+G+HNFHNFT+ DPSA RYI F + +G++F +V GQSFMLHQIR
Sbjct: 237 LKKYIGTHNFHNFTSGKAFTDPSANRYIKEFTCEKGFVDDGLEFAVIKVKGQSFMLHQIR 296
Query: 410 KMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
KM+GL +AVVR P S +E A Q + +++P AP +GL L+ + YNK+W
Sbjct: 297 KMLGLVLAVVRGLTPPSTVERAFQ-EPKLDIPRAPGLGLVLEAVHYDCYNKRW 348
>gi|325190406|emb|CCA24877.1| tRNA pseudouridine synthase putative [Albugo laibachii Nc14]
Length = 463
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 86/148 (58%), Gaps = 11/148 (7%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
C++R+ + AYCG Y GMQ N G TIE +LE ALF +G +S+ + G ++ W+R+A
Sbjct: 69 CRKRRYGFWVAYCGEKYSGMQLNEGVATIEAELERALFQAGGISDANYGFLQKIGWSRAA 128
Query: 117 RTDKGVSAVGQVVSGRFCIDP-----------PGLVERLNSNLPTQIRIFGYKRVTASFN 165
RTDKGV A GQ+V+ + D G +E++N++LP+ IR+ VT +FN
Sbjct: 129 RTDKGVHAAGQLVTAKLSFDSKSSEDRNGEQIKGFIEKINASLPSDIRVMDMVTVTKNFN 188
Query: 166 AKKFCDQRRYVYLLPVFALDSSSHRDRE 193
AK CD R Y YL+P F +D +
Sbjct: 189 AKLSCDYRTYEYLIPTFVFAGRQRKDHK 216
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 109/228 (47%), Gaps = 28/228 (12%)
Query: 237 NASLNSQVKV-DTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTS 295
NASL S ++V D V T N N L V ++ V+ +
Sbjct: 168 NASLPSDIRVMDMVTVTKN---FNAKLSCDYRTYEYLIPTFVFAGRQRKDHKDPVKVTQA 224
Query: 296 ETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVG 355
E + + TDL LD++ + ++ E+ Y + NRIL + G
Sbjct: 225 EEIVPKTTDLHLDVNHQQAYRMSTEQ----------------YDD-----LNRILAKFEG 263
Query: 356 SHNFHNFTTRTKAEDPSARRYIISFGADS--VVNVEGIDFLKCEVVGQSFMLHQIRKMIG 413
SH FHNFT++ P +RYI+SF AD V + ++++ V GQSF+LHQIRKMIG
Sbjct: 264 SHTFHNFTSKLLPTSPKCQRYIVSFKADQPFVPSNSAFEWIRLRVKGQSFLLHQIRKMIG 323
Query: 414 LAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
AV + A ++IE + D +++P AP VGLYL E F YN K
Sbjct: 324 TAVDLCAGAAESNVIERVMLLD-KMDLPKAPSVGLYLSEAHFEKYNLK 370
>gi|449476909|ref|XP_002194956.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial
[Taeniopygia guttata]
Length = 401
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 98/168 (58%), Gaps = 10/168 (5%)
Query: 49 DSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRG 105
D+ + + +RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E
Sbjct: 44 DAEDQNKKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGE 103
Query: 106 NPRRYDWARSARTDKGVSAVGQVVSGRF-CIDPPGLVERLNSNLPTQIRIFGYKRVTASF 164
+ ++ + R ARTDKGVSA GQ+VS + ID ++E++N++LP+ IRI G KRVT F
Sbjct: 104 DMKKMSFQRCARTDKGVSAAGQIVSLKVRLIDD--ILEKINNHLPSHIRILGLKRVTGGF 161
Query: 165 NAKKFCDQRRYVYLLPVFALDSSSHRDRESVMA----SLGSGNELVKC 208
N+K CD R Y Y+LP FA H +E + +L N L+ C
Sbjct: 162 NSKNKCDARTYSYMLPTFAFAHKDHDVQEELFRLDRDTLERVNRLLAC 209
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
+R NR+L Y G+HNFHNFT++ DPSA+RYI+ E ++F +V GQSF
Sbjct: 201 ERVNRLLACYKGTHNFHNFTSQKGPRDPSAKRYIMEMYCGEPFVRENVEFAVIQVRGQSF 260
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
M+HQIRKMIGL +A+V+ A +S++E + ++ ++VP AP +GL L++ F YN+++
Sbjct: 261 MMHQIRKMIGLVIAIVKGYAAESIMERSWGEE-KVDVPKAPGLGLVLEKVHFEKYNRRF 318
>gi|448533280|ref|XP_003870598.1| Pus1 protein [Candida orthopsilosis Co 90-125]
gi|380354953|emb|CCG24469.1| Pus1 protein [Candida orthopsilosis]
Length = 554
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 2/130 (1%)
Query: 59 RRKIAIFFAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+RK A+ YCG GY G+Q PG KTIE DL EA + +GA+S + + ++ + R+A
Sbjct: 90 KRKCAVMLGYCGTGYNGLQIQNEPGVKTIEKDLYEAFYKAGAISLENSLDLKKSGFQRTA 149
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
RTDKGV A G VVS + I+ P L +++N +LP QIRI+G +R T F+ +K C R Y
Sbjct: 150 RTDKGVHAAGNVVSLKMIIEDPDLKDKINQHLPDQIRIWGIQRTTKGFDCRKMCSSRVYE 209
Query: 177 YLLPVFALDS 186
YLLP ++L S
Sbjct: 210 YLLPTYSLIS 219
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E +RF ++ Y G+HNFHNFT +D S++RYII + +++ ++ G
Sbjct: 332 ERLERFRSTMQQYKGTHNFHNFTIGKSYKDTSSKRYIIDTTVSDPFVINNTEWISIKIHG 391
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFMLHQIRKMI +A V+R P LI+ + IN+P AP +GL L+ +F +YN
Sbjct: 392 QSFMLHQIRKMICMATLVIRCDLPIGLIDDCFEP-TKINIPKAPALGLLLENPVFDAYNY 450
Query: 461 KWKD 464
K +D
Sbjct: 451 KLRD 454
>gi|73994983|ref|XP_852307.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Canis
lupus familiaris]
Length = 409
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 85/135 (62%), Gaps = 6/135 (4%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E + R+ + R
Sbjct: 60 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQRC 119
Query: 116 ARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
ARTDKGVSA GQVVS + + ID ++E++NS+LP IRI G KRVT FN+K CD R
Sbjct: 120 ARTDKGVSAAGQVVSLKVWLID--DILEKINSHLPPHIRILGLKRVTGGFNSKNKCDART 177
Query: 175 YVYLLPVFALDSSSH 189
Y Y+LP FA H
Sbjct: 178 YFYMLPTFAFAHKDH 192
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 80/122 (65%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E +R N +L Y G+HNFHNFT++ ++ SARRYI+ + EG++F +V G
Sbjct: 204 ETLQRVNGLLACYKGTHNFHNFTSQKGPQEASARRYILDMFCEEPFVREGMEFAVIKVKG 263
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM HQIRKM+GL VA+V+ AP+S++E + D ++VP AP +GL L+ F YN+
Sbjct: 264 QSFMTHQIRKMVGLLVAIVKGYAPESVLERSW-GDAKVDVPKAPGLGLVLERVHFEKYNQ 322
Query: 461 KW 462
++
Sbjct: 323 RF 324
>gi|332254114|ref|XP_003276176.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Nomascus
leucogenys]
Length = 421
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 99/163 (60%), Gaps = 11/163 (6%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQ-KNPG---AKTIEGDLEE 91
D E +G D + +L KR KI + AY G GY GMQ +N G A+TIE DL
Sbjct: 54 DGEHPAKKLKSGGDEERRGKLPKR-KIVLLMAYSGKGYHGMQWRNLGSLQAQTIEDDLVS 112
Query: 92 ALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPT 150
AL SG + E + R+ + R ARTDKGVSA GQVVS + + ID ++E++NS+LP+
Sbjct: 113 ALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILEKINSHLPS 170
Query: 151 QIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 193
IRI G KRVT FN+K CD R Y YLLP FA +H+DR+
Sbjct: 171 HIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAF---AHKDRD 210
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ ++PSARRYI+ + EG++F V G
Sbjct: 221 ETLQQVNRLLACYKGTHNFHNFTSQKGPQEPSARRYILEMYCEEPFVREGLEFAVIRVKG 280
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 281 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGSE-KVDVPKAPGLGLVLERVHFEKYNQ 339
Query: 461 K 461
+
Sbjct: 340 R 340
>gi|156048366|ref|XP_001590150.1| hypothetical protein SS1G_08914 [Sclerotinia sclerotiorum 1980]
gi|154693311|gb|EDN93049.1| hypothetical protein SS1G_08914 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 599
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 82/126 (65%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+ K+A+ Y G GY+G+Q N KTIEGD+ +A +GA+S+ + +P++ R ART
Sbjct: 55 KHKVAVMIGYAGTGYKGLQINTKEKTIEGDMFKAFVAAGAISKANANDPKKSALVRCART 114
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + + P +VE +NS+LP QIR++G +R T SFN + CD R Y YL
Sbjct: 115 DKGVHAAGNVLSLKLITEDPNVVENINSHLPDQIRVWGIERTTGSFNCYQMCDSRWYEYL 174
Query: 179 LPVFAL 184
+P ++
Sbjct: 175 IPTYSF 180
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCE 397
E ++R L YVG++N+HN+T DPS+RR+I SF G ++ + ++L +
Sbjct: 387 ESRRQRVQEALNQYVGTYNYHNYTILKNYSDPSSRRHIKSFKIGPKPII-IHDTEWLSLK 445
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFAS 457
V GQSFM+HQIRKM+ +A VVR +P LI+ I++P AP +GL L+ +F +
Sbjct: 446 VHGQSFMMHQIRKMVAMAALVVRCASPMELIKETYTA-AKISIPKAPSLGLLLEAPVFHN 504
Query: 458 YNKK 461
YN+K
Sbjct: 505 YNEK 508
>gi|354479116|ref|XP_003501759.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 1
[Cricetulus griseus]
gi|344246326|gb|EGW02430.1| tRNA pseudouridine synthase A [Cricetulus griseus]
Length = 423
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 95/149 (63%), Gaps = 10/149 (6%)
Query: 49 DSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRG 105
D R+L KR KI + AY G GY GMQ+N G+ +TIE DL AL +G + E
Sbjct: 70 DEEAPRKLPKR-KIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGT 128
Query: 106 NPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASF 164
+ R+ + R ARTDKGVSA GQVVS + + ID +++++NS+LP+ IRI G KRVT F
Sbjct: 129 DMRKMSFQRCARTDKGVSAAGQVVSLKVWLID--DILDKINSHLPSNIRILGLKRVTGGF 186
Query: 165 NAKKFCDQRRYVYLLPVFALDSSSHRDRE 193
N+K CD R Y Y+LP FA +H+DR+
Sbjct: 187 NSKNKCDARTYCYMLPTFAF---AHKDRD 212
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 223 ETLEQVNRLLACYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 282
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 283 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 341
Query: 461 K 461
+
Sbjct: 342 R 342
>gi|66803188|ref|XP_635437.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4]
gi|60463746|gb|EAL61924.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4]
Length = 596
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+++K+AI Y G Y GMQKNPG KT+E +LE ALF +G +S + ++ DW R AR
Sbjct: 138 RKKKVAIILGYSGTNYAGMQKNPGLKTVEEELEHALFRTGGISPDNMYYQQKVDWIRCAR 197
Query: 118 TDKGVSAVGQVVSGRFCIDPP---GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
TDKGVSA+ VVS + + PP G+ LN LP I +F RV SF+AK D R
Sbjct: 198 TDKGVSAIRNVVSLKMEMGPPDFEGMKIALNKELPKDITVFHIMRVNNSFHAKNAVDARS 257
Query: 175 YVYLLPVFALDSSSHRDRESVMASLGSGNE 204
Y+Y+ P + + +S++ +G E
Sbjct: 258 YIYVTPTHVFEPKFSKKNKSIVEEAANGGE 287
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 12/127 (9%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFML 405
N++L Y+G+H FHN+T+R ++ D S R I SF +EG++ + VVG+SFML
Sbjct: 304 LNKVLSFYLGNHRFHNYTSRKESNDVSVFRKIHSFVCSEPFVLEGVEMVSINVVGESFML 363
Query: 406 HQIRKMIGLAVAVVR-----NCAPQSLIETALQKDVN-------INVPTAPEVGLYLDEC 453
HQIRKMIG ++ +R +C + ++ +N +N+P AP GL LD C
Sbjct: 364 HQIRKMIGCLISFIRKGMFEDCETRDQAFDQIKAYINSTFEHTPLNLPMAPGAGLLLDYC 423
Query: 454 IFASYNK 460
IF +NK
Sbjct: 424 IFNEWNK 430
>gi|328876653|gb|EGG25016.1| tRNA pseudouridylate synthase [Dictyostelium fasciculatum]
Length = 542
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 84/131 (64%), Gaps = 3/131 (2%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
K++KIA Y G Y GMQKN G TIE +LE+A F +G++S + + R+ DW R AR
Sbjct: 114 KKKKIAFCVGYSGTNYCGMQKNWGYSTIEEELEKACFKTGSISPNNFYSQRKIDWIRCAR 173
Query: 118 TDKGVSAVGQVVSGRFCIDPPGLVE---RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
TDKGVSAV +VS + DPP L E +NS+LP I++FG KRV SF+AK D R
Sbjct: 174 TDKGVSAVRNMVSCKLEYDPPTLEELKNAINSHLPEDIKVFGIKRVNNSFHAKNCVDGRS 233
Query: 175 YVYLLPVFALD 185
Y+Y+ P FA +
Sbjct: 234 YLYITPTFAFE 244
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 82/143 (57%), Gaps = 12/143 (8%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLK 395
+ + E E+ R N +L ++G+H FHN+T+R + DPSA+R + F +EGI+F+
Sbjct: 256 YKFDETERSRVNSMLAMFLGTHKFHNYTSRKDSGDPSAKRTMSLFQCSEPFVMEGIEFVS 315
Query: 396 CEVVGQSFMLHQIRKMIGLAVAVVR-------NCAPQSL-----IETALQKDVNINVPTA 443
++G SFMLHQIRKMIG ++V+R N +SL I TA N+P A
Sbjct: 316 INIIGGSFMLHQIRKMIGFVMSVMRRGFFWEKNNDTESLDYVRKIITATLCHRQFNLPMA 375
Query: 444 PEVGLYLDECIFASYNKKWKDSH 466
P GL LD C+F + KK+K H
Sbjct: 376 PGTGLMLDACLFDVWTKKFKSVH 398
>gi|50756277|ref|XP_415090.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Gallus
gallus]
Length = 409
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 90/149 (60%), Gaps = 6/149 (4%)
Query: 45 AAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSE 101
A D+ + + +RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E
Sbjct: 49 AGEGDAEGQNKRTPKRKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVSALVRSGCIPE 108
Query: 102 RDRGNPRRYDWARSARTDKGVSAVGQVVSGRF-CIDPPGLVERLNSNLPTQIRIFGYKRV 160
+ ++ + R ARTDKGVSA GQ+VS + ID ++E++N++LP+ IRI G KRV
Sbjct: 109 NHGEDMKKMSFQRCARTDKGVSAAGQIVSLKVRLIDD--ILEKINNHLPSHIRILGLKRV 166
Query: 161 TASFNAKKFCDQRRYVYLLPVFALDSSSH 189
T FN+K CD R Y Y+LP FA H
Sbjct: 167 TGGFNSKNKCDARTYAYMLPTFAFAHKDH 195
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 82/122 (67%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ N +L Y G+HNFHNFT++ +DPSARRYI+ EGI+F +V G
Sbjct: 207 ETLEKVNSLLARYKGTHNFHNFTSQKGPKDPSARRYIMEMYCGEPFVREGIEFAVIKVKG 266
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKMIGL +A+V+ AP+S+IE + ++ ++VP AP +GL L+ F YN+
Sbjct: 267 QSFMMHQIRKMIGLVIAIVKGYAPESIIERSWGEE-KVDVPKAPGLGLVLERVHFEKYNR 325
Query: 461 KW 462
++
Sbjct: 326 RF 327
>gi|351698591|gb|EHB01510.1| tRNA pseudouridine synthase A [Heterocephalus glaber]
Length = 420
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 89/138 (64%), Gaps = 7/138 (5%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RKI + AY G GY GMQ+N G+ KTIE DL AL +G + E + R+ + R
Sbjct: 79 KRKIVLLMAYSGKGYHGMQRNSGSSKFKTIEDDLVSALVRAGCIPESHGEDMRKMSFQRC 138
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
ARTDKGVSA GQVVS + + L++++NS+LP+ IRI G +RVT FN+K CD R Y
Sbjct: 139 ARTDKGVSAAGQVVSLKVWLIE-DLLDKINSHLPSHIRILGLRRVTGGFNSKNKCDARTY 197
Query: 176 VYLLPVFALDSSSHRDRE 193
Y+LP FA +H+DR+
Sbjct: 198 FYMLPTFAF---AHKDRD 212
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L + G+HNFHNFT++ +PSARRY++ + EG++F +V G
Sbjct: 223 ETLQQVNRLLACHKGTHNFHNFTSQKGPHEPSARRYVLEMYCEPPFEREGLEFAVIKVKG 282
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++ + + ++VP AP +GL L+ F +YN+
Sbjct: 283 QSFMMHQIRKMVGLVVAIVKGYAPESVLACSW-GEAKVDVPKAPGLGLVLERVHFETYNQ 341
Query: 461 K 461
+
Sbjct: 342 R 342
>gi|343426672|emb|CBQ70201.1| related to PUS1-pseudouridine synthase 1 [Sporisorium reilianum
SRZ2]
Length = 570
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 85/132 (64%), Gaps = 6/132 (4%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ F YCG+GY G+Q NPG KTIEGD+ +A +GAVS + NP + R+ART
Sbjct: 93 KRKVAVKFGYCGIGYSGLQINPGVKTIEGDIFQAFCTAGAVSADNAVNPNKVGLQRAART 152
Query: 119 DKGVSAVGQVVSGRFCIDPPG------LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
D+GV A G ++S + + P G LV+R+N+ LP IR++G RV F+A++ CD
Sbjct: 153 DRGVHAAGNLLSLKLILQPDGLQEGETLVDRVNALLPEFIRVWGVTRVQNGFSARQSCDS 212
Query: 173 RRYVYLLPVFAL 184
R Y YLLP +
Sbjct: 213 RMYEYLLPTYVF 224
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 4/232 (1%)
Query: 237 NASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSE 296
NA L ++V V NG + +S + V V ++++ LV R E
Sbjct: 185 NALLPEFIRVWGVTRVQNGFSARQSCDSRMYEYLLPTYVFVPPKPGSTMHDMLVRMRDDE 244
Query: 297 TVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGS 356
+ T L D + + + + + + F R I Y+GS
Sbjct: 245 LAKTGATTLG---DVVDHAFWTQHGTTHDFSTDMRAKTAFRLPASALARIRSIFARYLGS 301
Query: 357 HNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAV 416
HNFHNFT + D S +R++ + +++ + GQSFMLHQIRKMIGL V
Sbjct: 302 HNFHNFTVGKEFRDRSCQRFMKQLTISDPTVIGDTEWVSIKFHGQSFMLHQIRKMIGLLV 361
Query: 417 AVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
V R A + L++ +++P AP +GL L++ IF +YN + ++++++
Sbjct: 362 LVGRTGAGEGLVDECFGP-ARVHIPKAPGLGLLLEQPIFDAYNTRIRNNNDK 412
>gi|348686693|gb|EGZ26507.1| hypothetical protein PHYSODRAFT_308307 [Phytophthora sojae]
Length = 497
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 82/131 (62%), Gaps = 4/131 (3%)
Query: 56 LCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
L +R+ ++ A+CG Y GMQ N G KTIE +LE ALF +G ++E + G ++ W+R+
Sbjct: 67 LPTKRRYGLWVAFCGKNYSGMQMNEGVKTIEAELERALFEAGGIAESNYGFLQKIGWSRA 126
Query: 116 ARTDKGVSAVGQVVSGRFCI----DPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCD 171
ARTDKGV A GQ+++ + + D P V ++N+ LP IR+ VT +FNAK CD
Sbjct: 127 ARTDKGVHAAGQLLTAKLHVGEDADIPAFVGKVNAALPEDIRVMHMVTVTKNFNAKMTCD 186
Query: 172 QRRYVYLLPVF 182
QR Y YL P F
Sbjct: 187 QRTYEYLAPTF 197
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 82/131 (62%), Gaps = 1/131 (0%)
Query: 335 GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFL 394
F +E ++ N LK YVG+HNFHNFT++ + +P A+R+IISF A+ ++++
Sbjct: 252 AFRLSDETLEKLNATLKEYVGTHNFHNFTSKMEPTNPQAKRFIISFEAERPFVQNDMEWV 311
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454
+ VVGQSF+LH IRKMIG AV +V S IE A+Q +++P AP VGLYL +
Sbjct: 312 RLRVVGQSFLLHHIRKMIGTAVEIVSGVTDPSTIERAMQL-TKMDLPKAPSVGLYLAQAH 370
Query: 455 FASYNKKWKDS 465
F YN K +S
Sbjct: 371 FEVYNLKMAES 381
>gi|391340105|ref|XP_003744386.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A,
mitochondrial-like [Metaseiulus occidentalis]
Length = 417
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 101/174 (58%), Gaps = 3/174 (1%)
Query: 14 PSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGY 73
P L+ ++E + ++++ + D + A A++ Q K +K A+ YCG GY
Sbjct: 32 PELAEKREAESGVVEVTENQAKKPKLDEVTADGSAETKATEQKWKLKKFAMCLTYCGKGY 91
Query: 74 QGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRF 133
G+QKNPG KTIEGDL EA +G ++ P+ + R+ARTDKGVSA Q++S +
Sbjct: 92 LGLQKNPGFKTIEGDLLEACVKAGVITPESAEYPQGISFQRAARTDKGVSAARQILSLKL 151
Query: 134 CI--DPP-GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+PP +V ++N +L QIR+ G KRVT +FN+K D R Y+Y+ P FA
Sbjct: 152 PTTKEPPEEMVRKINEHLVDQIRVIGLKRVTKNFNSKNNADARTYLYICPTFAF 205
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E + NR+LK Y+G HNFHNFT+ + SA+R + S V +++++ + G
Sbjct: 221 ERVEEINRLLKMYIGCHNFHNFTSGKLYTEASAKRVLFEVDCSSPFMVGKLEYVQFRLKG 280
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFMLHQIRKM+G + ++R ++ I A + ++VP AP +GL LD + Y+
Sbjct: 281 QSFMLHQIRKMVGTIIGIMRGYTTEAFITRAFGPE-KLDVPKAPPLGLMLDTVHYTRYDD 339
Query: 461 KW--KDSHE 467
++ SHE
Sbjct: 340 RYGGDGSHE 348
>gi|328771895|gb|EGF81934.1| hypothetical protein BATDEDRAFT_87010 [Batrachochytrium
dendrobatidis JAM81]
Length = 491
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 82/136 (60%), Gaps = 11/136 (8%)
Query: 49 DSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPR 108
D+ K+ ++K+ + +YCG GYQGMQ NP +IE DL +AL SGA++
Sbjct: 88 DTLEKKPRMPKKKVVLLMSYCGTGYQGMQINPDVPSIELDLHKALAASGAIA-------- 139
Query: 109 RYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
+ R ARTDKGV A GQVVS + I ++ER+N+ LP QIR++GY RV F+AK
Sbjct: 140 ---FMRCARTDKGVHAGGQVVSLKMIIQDSDIIERINARLPPQIRVWGYARVQQQFHAKH 196
Query: 169 FCDQRRYVYLLPVFAL 184
CD R Y Y+LP L
Sbjct: 197 HCDSRIYEYILPTSVL 212
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 80/127 (62%), Gaps = 1/127 (0%)
Query: 335 GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFL 394
G+ +E + F IL YVG+HN+HNFT K ED S+ RYIISF + +++
Sbjct: 259 GYRTNHQELEEFRAILNEYVGTHNYHNFTIGRKFEDKSSIRYIISFICSEPFQRDNTEWV 318
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454
+V GQSFMLHQIRKMIGLAV ++R P++LI + + IN+P AP +GL L+ +
Sbjct: 319 SLKVKGQSFMLHQIRKMIGLAVMMMRTSTPKNLIASTFSQ-TRINIPKAPALGLLLERPL 377
Query: 455 FASYNKK 461
F +YN +
Sbjct: 378 FENYNSQ 384
>gi|361129503|gb|EHL01409.1| putative tRNA pseudouridine synthase 1 [Glarea lozoyensis 74030]
Length = 747
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 83/126 (65%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N KTIEGDL +A +GA+S+ + +P++ R ART
Sbjct: 129 KRKVAVLIGYAGSGYKGMQINGTEKTIEGDLFKAFVAAGAISKANADDPKKSTLVRCART 188
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + ++ +V+++N+ LP QIR++GY+R SF+ + CD R Y YL
Sbjct: 189 DKGVHAAGNVISLKLIVEEDDIVQKINAALPPQIRVWGYERTNGSFSCYQSCDSRWYEYL 248
Query: 179 LPVFAL 184
+P ++
Sbjct: 249 IPTYSF 254
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 74/127 (58%), Gaps = 4/127 (3%)
Query: 335 GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGID 392
+ E ++R L YVG+ NFHN+T + DPSA+R I SF G D V + +
Sbjct: 524 AYRISEYRRQRVEEALNTYVGTCNFHNYTIQKSFSDPSAKRVIRSFKVGKDPVY-INDTE 582
Query: 393 FLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDE 452
+L +V GQSFM+HQIRKM+ +A VVR + +I + + I++P AP +GL L+
Sbjct: 583 WLSLKVHGQSFMMHQIRKMVAMASMVVRCGSTAEVIRDSYGR-APISIPKAPSLGLLLER 641
Query: 453 CIFASYN 459
+F SYN
Sbjct: 642 PVFNSYN 648
>gi|410976436|ref|XP_003994626.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Felis
catus]
Length = 673
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 90/146 (61%), Gaps = 7/146 (4%)
Query: 48 ADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDR 104
+D+ R+L KR KI + Y G GY GMQ+N G+ KTIE DL AL SG + E
Sbjct: 48 SDAEQHRKLPKR-KIVLLMGYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHG 106
Query: 105 GNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTAS 163
+ R+ + R ARTDKGVSA GQVVS + + ID ++E++N +LP IRI G KRVT
Sbjct: 107 EDMRKMSFQRCARTDKGVSAAGQVVSLKVWLID--DILEKINGHLPPHIRILGLKRVTGG 164
Query: 164 FNAKKFCDQRRYVYLLPVFALDSSSH 189
FN+K CD R Y+Y+LP FA H
Sbjct: 165 FNSKNKCDARTYLYMLPTFAFAHKDH 190
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
+R N +L Y G+HNFHNFT++ + SARRYI+ + EG++F +V GQSF
Sbjct: 205 RRVNALLACYKGTHNFHNFTSQKGPREASARRYILDMFCEEPFVREGMEFAVIKVKGQSF 264
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
M HQIRKM+GL VAV++ AP+SL+E + + ++VP AP +GL L+ F YN+++
Sbjct: 265 MTHQIRKMVGLVVAVIKGYAPESLLERSW-GEAKVDVPKAPGLGLVLERVHFDKYNQRF 322
>gi|281201760|gb|EFA75968.1| tRNA pseudouridylate synthase [Polysphondylium pallidum PN500]
Length = 531
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 80/127 (62%), Gaps = 3/127 (2%)
Query: 62 IAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKG 121
+AI Y G Y+GMQKNPG TIE +LE+A+F G +S + R+ DW R ARTDKG
Sbjct: 132 VAICVGYSGTNYRGMQKNPGFPTIEDELEKAIFKVGGISPDNMYCHRKIDWIRCARTDKG 191
Query: 122 VSAVGQVVSGRFCIDPPGLVER---LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
VSA+ +VS + DPP L E +N+ LP IR+F KRV +F+AK D+R Y+Y+
Sbjct: 192 VSAIRNMVSCKLEYDPPTLDEMKTAINAQLPNDIRVFAIKRVNNTFHAKNCVDRRSYIYI 251
Query: 179 LPVFALD 185
P FA +
Sbjct: 252 TPTFAFE 258
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 12/147 (8%)
Query: 332 KGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGI 391
K + + + E E+ R N +LK +VG+ +HN+T++ ++ DPSA R + SF EG+
Sbjct: 265 KPAQYKFDELERTRLNSLLKLFVGTRKYHNYTSKKESNDPSAVRTVNSFECSEPFMNEGV 324
Query: 392 DFLKCEVVGQSFMLHQIRKMIGLAVAVVRN--CAPQSLIETALQK----------DVNIN 439
+ + +VGQSFMLHQIRKMIG+ + +R A E AL K N
Sbjct: 325 ELVAINIVGQSFMLHQIRKMIGVTMQFMRKGFFADSESDEAALSKMKKLVEATFAHRQFN 384
Query: 440 VPTAPEVGLYLDECIFASYNKKWKDSH 466
+P AP GL LD C++ + +K+ H
Sbjct: 385 LPMAPGAGLLLDRCLYDIWTQKFGSVH 411
>gi|400599046|gb|EJP66750.1| tRNA pseudouridine synthase A [Beauveria bassiana ARSEF 2860]
Length = 598
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 82/126 (65%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N TIE DL +A +GA+S+ + +PR+ AR ART
Sbjct: 96 KRKVAVMIGYSGTGYKGMQVNGDEPTIERDLFQAFIKAGAISKANADDPRKSSLARCART 155
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ +V+++N+ LP QIRI+G +R SFN ++CD R Y YL
Sbjct: 156 DKGVHAAGNVISLKLIIEDEDIVDKINAALPEQIRIWGIQRTNNSFNCYQYCDSRFYEYL 215
Query: 179 LPVFAL 184
LP + L
Sbjct: 216 LPSYCL 221
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 343 KKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVGQ 401
++R L Y G+ NFHN+T + DPSA+R I SF + V + ++L +V GQ
Sbjct: 383 RERLQEALDKYTGTRNFHNYTVQKAYGDPSAKRTIKSFKVNPTPVLINNTEWLSLKVHGQ 442
Query: 402 SFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
SFM+HQIRKM+GL +VR P ++ + Q + + +P AP +GL L+ +F ++N++
Sbjct: 443 SFMMHQIRKMVGLVSLMVRCGTPLERMDESYQ-NHKMAIPKAPGLGLLLEHPVFTNFNRR 501
Query: 462 WKDS 465
D+
Sbjct: 502 ATDN 505
>gi|50303379|ref|XP_451631.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74637053|sp|Q6CWQ8.1|PUS1_KLULA RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|49640763|emb|CAH02024.1| KLLA0B02244p [Kluyveromyces lactis]
Length = 553
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 92/152 (60%), Gaps = 2/152 (1%)
Query: 35 SDDERDLIPAAAGADSTTKRQLCK--RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEA 92
S D+ + + A AD Q + +RK+A+ YCG GY GMQ NP TIE +L EA
Sbjct: 72 SKDKDESVALAVDADGNPIPQEVRLPKRKVAVMIGYCGTGYHGMQYNPPNDTIEKELFEA 131
Query: 93 LFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQI 152
+GA+S+ + + ++ + R+ARTDKGV A G V+S + I+ P + E++N+ LP QI
Sbjct: 132 FVRAGAISKANSTDLKKNGFQRAARTDKGVHAGGNVISLKLIIEDPEVKEKINNELPDQI 191
Query: 153 RIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
R++ RV +F+ +K C R Y YLLP ++L
Sbjct: 192 RVWDISRVNKAFDCRKMCSSRWYEYLLPTYSL 223
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
RF LK Y G+ NFHNFT DPSA+R++ I+ V+ +++ ++ GQS
Sbjct: 319 RFRSALKQYEGTFNFHNFTLGKDFNDPSAKRFMKQITVSEPFVIGEAKTEWVSIKIHGQS 378
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
FMLHQIRKMI +A + R +P I A ++ IN+P AP +GL L+ ++ YN +
Sbjct: 379 FMLHQIRKMISMATLITRCFSPLERIRQAYGQE-KINIPKAPALGLLLEAPVYDGYNTRL 437
Query: 463 KD 464
++
Sbjct: 438 QE 439
>gi|340518448|gb|EGR48689.1| Hypothetical protein TRIREDRAFT_27492 [Trichoderma reesei QM6a]
Length = 507
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 82/126 (65%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N +TIE DL +A +GA+S+ + +PR+ AR ART
Sbjct: 58 KRKVAVMIGYAGTGYKGMQLNGDEETIERDLFQAFIKAGAISKANADDPRKSSLARCART 117
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ +V+++N LP QIR++G +R SFN ++CD R Y YL
Sbjct: 118 DKGVHAAGNVISLKLIIEDEDIVDKINEALPAQIRVWGIQRTNNSFNCYQYCDSRWYEYL 177
Query: 179 LPVFAL 184
+P + L
Sbjct: 178 MPSYCL 183
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 74/130 (56%), Gaps = 10/130 (7%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGI-----DFLK 395
E +R L Y G++NFHN+T + DPS++R+I SF VVN + I ++L
Sbjct: 323 ERIQRLQEALNKYEGTNNFHNYTVQKSHGDPSSKRHIRSF----VVNPKPIIIGDTEWLS 378
Query: 396 CEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIF 455
+V GQSFM+HQIRKM+GL +VR C T + +P P +GL L+ +F
Sbjct: 379 LKVHGQSFMMHQIRKMVGLVTLLVR-CGTTLDRITESYGPKKMAIPKMPGLGLLLERPVF 437
Query: 456 ASYNKKWKDS 465
+YNK+ K++
Sbjct: 438 ENYNKRAKET 447
>gi|340959145|gb|EGS20326.1| hypothetical protein CTHT_0021520 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 658
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 83/126 (65%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY G+Q N +TIEGDL A +GA+S+ + +P++ R ART
Sbjct: 127 KRKVAVLIGYAGTGYHGIQINHKERTIEGDLFAAFVKAGAISKVNADDPKKSSLVRCART 186
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + ++ P +VE++NS+LP QIR++G +R + F+ + CD R Y YL
Sbjct: 187 DKGVHAAGNVLSLKLIVEDPDIVEKINSHLPDQIRVWGIQRTSNGFSCYQACDSRWYEYL 246
Query: 179 LPVFAL 184
+P ++L
Sbjct: 247 MPSYSL 252
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 73/119 (61%), Gaps = 2/119 (1%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKCEVVGQS 402
+R L Y+G+ NFHN+T +D SA+R+I SF + + + + ++L +V GQS
Sbjct: 445 QRLQEALNQYLGTRNFHNYTVMKAFKDASAKRHIKSFQVNPNPIQIRDTEWLSLKVHGQS 504
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FM+HQIRKM+ +AV VVR AP +I + I++P AP +GL L+ +F YNKK
Sbjct: 505 FMMHQIRKMVAMAVMVVRCGAPLDIINQSYGPR-RISIPKAPGLGLMLERPMFTEYNKK 562
>gi|345323862|ref|XP_001510884.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Ornithorhynchus anatinus]
Length = 403
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 85/135 (62%), Gaps = 6/135 (4%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RKI + AY G GY GMQ++ G+ KTIE DL AL SG + E + ++ + R
Sbjct: 56 KRKIVLLMAYSGKGYYGMQRHVGSSQFKTIEDDLVSALVQSGCIPENHGDDMKKMSFQRC 115
Query: 116 ARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
ARTDKGVSA GQ+VS + + ID ++E++NS+LP+QIRI G KRVT FN+K C R
Sbjct: 116 ARTDKGVSAAGQIVSLKVWLID--NILEKINSHLPSQIRILGLKRVTGGFNSKNNCTART 173
Query: 175 YVYLLPVFALDSSSH 189
Y Y+LP A H
Sbjct: 174 YFYMLPTLAFAHKDH 188
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
+R NR+L Y G+H+FHNFT++ +D S RYI+ + EG++F +V GQSF
Sbjct: 203 ERVNRLLACYKGTHHFHNFTSQKGPKDASGMRYIMEMYCEEPFVREGMEFAVIKVKGQSF 262
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
M+HQIRKMIGL +A+V+ A QS++E + ++ +++P AP +GL L+ F SYN+++
Sbjct: 263 MMHQIRKMIGLVIAIVKGYADQSVMERSWGEE-KVDIPKAPGLGLVLERVHFESYNRRF 320
>gi|407917586|gb|EKG10890.1| Pseudouridine synthase I TruA [Macrophomina phaseolina MS6]
Length = 706
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 88/144 (61%)
Query: 41 LIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVS 100
++P A + + +RK+ + Y G GY+GMQ P +TIEGDL A +GA+S
Sbjct: 109 VLPKAFSKEEVESEERRPKRKVVVMIGYSGSGYKGMQIMPNHRTIEGDLFTAFVKAGAIS 168
Query: 101 ERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRV 160
+ + +P++ R ARTDKGV A G V+S + I+ P +VE++NS+L QIR++G +R
Sbjct: 169 KANADDPKKSALVRCARTDKGVHAAGNVISLKLIIEDPDIVEKINSHLSPQIRVWGIERT 228
Query: 161 TASFNAKKFCDQRRYVYLLPVFAL 184
T SF+A + D R Y YL+P ++
Sbjct: 229 TGSFSAYQAVDSRWYEYLIPTYSF 252
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 111/207 (53%), Gaps = 19/207 (9%)
Query: 267 SNKTISESVMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKNDSKV-MAEERSVN 325
+N SE + VE SES + T N D+ + +K+ +A++R++
Sbjct: 407 TNAPTSEPMGVEVTKSESA--PAQDDSVQTTTDRPNPSAEDDMPPVDPAKLTLAQKRAIE 464
Query: 326 GEEKLLKGSGFCYGEEEK------KRFNRI---LKHYVGSHNFHNFTTRTKAEDPSARRY 376
K +KG Y + +K KR +R+ L Y G+ N+HN+T +DPSA+R
Sbjct: 465 AAVKKIKG---IYMDAKKAYRVPPKRIDRLRAALNAYEGTRNYHNYTVHKTFKDPSAKRL 521
Query: 377 IISF-GADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVR-NCAPQSLIETALQK 434
I SF A+ + + G +++ +V GQSFM+HQIRKM+G+A VVR C + + ET
Sbjct: 522 IKSFKAAEKPIIINGTEWISLKVHGQSFMMHQIRKMVGMAALVVRCGCPIERIGETF--G 579
Query: 435 DVNINVPTAPEVGLYLDECIFASYNKK 461
+V++ +P P +GL L+ +F SYN K
Sbjct: 580 NVDVAIPKVPGLGLLLERPVFDSYNAK 606
>gi|322705939|gb|EFY97522.1| tRNA pseudouridine synthase [Metarhizium anisopliae ARSEF 23]
Length = 612
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 81/126 (64%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N TIE DL A + A+S+ + +PR+ AR ART
Sbjct: 114 KRKVAVMIGYSGTGYKGMQVNGDEPTIERDLFRAFIDAKAISKANADDPRKSSLARCART 173
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ +VE++N++LP QIRI+G +R SFN ++CD R Y YL
Sbjct: 174 DKGVHAAGNVISLKLIIEDEDIVEKINAHLPEQIRIWGIQRTNNSFNCYQYCDSRFYEYL 233
Query: 179 LPVFAL 184
LP + L
Sbjct: 234 LPSYCL 239
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKCEVV 399
E +R +L Y G++NFHNFT + DPSARR+I SF + V + G ++L +V
Sbjct: 389 ERLQRLQSVLDKYTGTYNFHNFTIQKTFSDPSARRHIKSFTVNPKPVIIGGTEWLSLKVH 448
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
GQSFM+HQIRKM+GLA +VR + + Q+ + +P AP +GL L+ +F +YN
Sbjct: 449 GQSFMMHQIRKMVGLASLMVRCGTALDRVADSYQEQ-KMAIPKAPGLGLLLERPVFDNYN 507
Query: 460 KKWKDS 465
++ KD+
Sbjct: 508 RRAKDT 513
>gi|448091329|ref|XP_004197304.1| Piso0_004551 [Millerozyma farinosa CBS 7064]
gi|448095890|ref|XP_004198335.1| Piso0_004551 [Millerozyma farinosa CBS 7064]
gi|359378726|emb|CCE84985.1| Piso0_004551 [Millerozyma farinosa CBS 7064]
gi|359379757|emb|CCE83954.1| Piso0_004551 [Millerozyma farinosa CBS 7064]
Length = 549
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 89/143 (62%), Gaps = 5/143 (3%)
Query: 59 RRKIAIFFAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
++K+A YCG GY GMQ NP +TIEGDL +A +GA+S + + ++ + R+A
Sbjct: 68 KKKVACMIGYCGTGYNGMQIQNNPNIETIEGDLFKAFVAAGAISPENADDLKKNGFMRAA 127
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
RTDKGV A G V+S + I+ ++E++N+ LP QIR++G +R SF+ +K C R Y
Sbjct: 128 RTDKGVHAAGNVISCKLIIEDEDIIEKINAQLPDQIRVWGIERTNKSFDCRKMCSSRVYE 187
Query: 177 YLLPVFALDSSSHRDRESVMASL 199
YLLP ++L R SV+A L
Sbjct: 188 YLLPTYSLLPPKPR---SVLAEL 207
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFML 405
F L Y G+HNFHNFT +DPS+ RY+ +EG +++ ++ GQSFML
Sbjct: 312 FREALNQYEGAHNFHNFTLGKTFKDPSSVRYMKKLTVSDPFVIEGTEWVSIKIHGQSFML 371
Query: 406 HQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
HQIRKMI +A V+R P I + +N+P AP +GL L+ ++ YN
Sbjct: 372 HQIRKMIAMAALVIRTGCPLERISDCFGP-IKVNIPKAPALGLLLENPVYDGYN 424
>gi|344300120|gb|EGW30460.1| hypothetical protein SPAPADRAFT_157524 [Spathaspora passalidarum
NRRL Y-27907]
Length = 525
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 83/128 (64%), Gaps = 2/128 (1%)
Query: 59 RRKIAIFFAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+RK A+ YCG GY GMQ +P KTIE DL +A +GA+S + + ++ + R+A
Sbjct: 85 KRKCAVMIGYCGTGYNGMQLQNDPTIKTIERDLYDAFGKAGAISRENAEDMKKSGFMRAA 144
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
RTDKGV A G VVS + I+ P +V+++N +LP QIR++G +R T F+ +K C R Y
Sbjct: 145 RTDKGVHAAGNVVSLKLIIEDPDIVKKINEHLPDQIRVWGIQRTTKGFDCRKLCSSRIYE 204
Query: 177 YLLPVFAL 184
YLLP ++L
Sbjct: 205 YLLPTYSL 212
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLK 395
F E +F +K Y G+HNFHNFT +DPSA R++ + +EG +++
Sbjct: 313 FKISTERLNQFREAMKQYEGTHNFHNFTIGKHFKDPSASRFMKTTTVSDPFVIEGTEWVS 372
Query: 396 CEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIF 455
++ GQSFMLHQIRKMI +A VVR P ++I+ + IN+P AP +GL L+ ++
Sbjct: 373 IKIHGQSFMLHQIRKMIAMATMVVRIGCPVNIIQDFF-GNKKINIPKAPALGLLLENPVY 431
Query: 456 ASYNK 460
+YN+
Sbjct: 432 EAYNQ 436
>gi|213401227|ref|XP_002171386.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|211999433|gb|EEB05093.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 503
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 79/126 (62%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A YCG GY GMQ NP KTIEGDL EA GAVS + +P++ AR+ART
Sbjct: 43 KRKVACLVGYCGTGYHGMQLNPPNKTIEGDLFEAFVKVGAVSSYNADDPKKVALARAART 102
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V++ + ++ L++++N LP IR++ R SFN + +C+ R Y YL
Sbjct: 103 DKGVHAAGNVITLKLILEDENLIQKVNEVLPPTIRVWDVIRTINSFNPRTYCESRIYEYL 162
Query: 179 LPVFAL 184
LP +A
Sbjct: 163 LPSYAF 168
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIR 409
K + G HNFHNFT D S+ R I SF + +EG ++L +V GQSFMLHQIR
Sbjct: 291 FKRFEGVHNFHNFTVGQSFHDRSSNRVIKSFTVSDPIIIEGTEWLSLKVHGQSFMLHQIR 350
Query: 410 KMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
KM+ L + VVR P I +K +N+P P +GL L+ F YN+
Sbjct: 351 KMVALIMLVVRTGCPLGRIGETFRKP-RVNIPRGPGLGLLLESPFFQGYNE 400
>gi|119618936|gb|EAW98530.1| pseudouridylate synthase 1, isoform CRA_a [Homo sapiens]
gi|119618939|gb|EAW98533.1| pseudouridylate synthase 1, isoform CRA_a [Homo sapiens]
Length = 338
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/132 (51%), Positives = 86/132 (65%), Gaps = 9/132 (6%)
Query: 66 FAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
AY G GY GMQ+N G+ KTIE DL AL SG + E + R+ + R ARTDKGV
Sbjct: 1 MAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGV 60
Query: 123 SAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPV 181
SA GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K CD R Y YLLP
Sbjct: 61 SAAGQVVSLKVWLIDD--ILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPT 118
Query: 182 FALDSSSHRDRE 193
FA +H+DR+
Sbjct: 119 FAF---AHKDRD 127
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +DPSA RYI+ + EG++F V G
Sbjct: 138 ETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKG 197
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 198 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLVLERVHFEKYNQ 256
Query: 461 KW 462
++
Sbjct: 257 RF 258
>gi|346324816|gb|EGX94413.1| tRNA pseudouridine synthase [Cordyceps militaris CM01]
Length = 585
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 80/126 (63%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N TIE DL A +GA+S+ + +PR+ AR ART
Sbjct: 96 KRKVAVMIGYSGTGYKGMQVNGDEPTIERDLFRAFIKAGAISKANADDPRKSSLARCART 155
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ +V+++N LP QIRI+G +R SFN ++CD R Y YL
Sbjct: 156 DKGVHAAGNVISLKLIIEEDDIVDKINEALPEQIRIWGIQRTNNSFNCYQYCDSRFYEYL 215
Query: 179 LPVFAL 184
LP + L
Sbjct: 216 LPSYCL 221
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 343 KKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVGQ 401
++R L Y G+ NFHN+T + DPSA+R I SF + V + ++L +V GQ
Sbjct: 370 RERLQAALNKYTGTRNFHNYTVQKAYGDPSAKRTIKSFRVNPTPVLINNTEWLSLKVHGQ 429
Query: 402 SFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
SFM+HQIRKM+GL +VR P ++ + + + +P AP +GL L+ +F +YN++
Sbjct: 430 SFMMHQIRKMVGLVSLMVRCGTPLERMDESYCNN-KMAIPKAPGLGLLLEHPVFTNYNRR 488
Query: 462 WKDS 465
D+
Sbjct: 489 ATDN 492
>gi|374108673|gb|AEY97579.1| FAFL105Cp [Ashbya gossypii FDAG1]
Length = 528
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 84/140 (60%)
Query: 45 AAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDR 104
A S K +RK+A+ YCG GY GMQ NP +TIE +L EA +GA+S +
Sbjct: 52 ALAGTSEEKEARLPKRKVAVMVGYCGTGYHGMQYNPPNRTIEAELFEAFVKAGAISRANS 111
Query: 105 GNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASF 164
+ ++ + R+ARTDKGV A G V+S + I+ P + +++N +LP IR++G RV +F
Sbjct: 112 TDLKKNGFMRAARTDKGVHAGGNVISLKLIIEDPAIKDKINEHLPPGIRVWGISRVNKAF 171
Query: 165 NAKKFCDQRRYVYLLPVFAL 184
+ +K C R Y YLLP ++
Sbjct: 172 DCRKLCGSRWYEYLLPTYSF 191
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 74/121 (61%), Gaps = 7/121 (5%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
RF +K Y+G HNFHN+T +DPS R++ I+ V+ +++ ++ GQS
Sbjct: 288 RFREAMKQYLGPHNFHNYTLGKDFKDPSTVRFMKDITVSDPFVIGEMKTEWVSIKIHGQS 347
Query: 403 FMLHQIRKMIGLAVAVVR-NCAPQSLIET-ALQKDVNINVPTAPEVGLYLDECIFASYNK 460
FMLHQIRKMI +A V R NC+P+ + ++ QK IN+P AP +GL L+ ++ YNK
Sbjct: 348 FMLHQIRKMISMATLVARCNCSPERIAQSYGPQK---INIPKAPALGLLLESPVYEGYNK 404
Query: 461 K 461
+
Sbjct: 405 R 405
>gi|302308519|ref|NP_985445.2| AFL105Cp [Ashbya gossypii ATCC 10895]
gi|442570003|sp|Q755C8.2|PUS1_ASHGO RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|299790670|gb|AAS53269.2| AFL105Cp [Ashbya gossypii ATCC 10895]
Length = 528
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 84/140 (60%)
Query: 45 AAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDR 104
A S K +RK+A+ YCG GY GMQ NP +TIE +L EA +GA+S +
Sbjct: 52 ALAGTSEEKEARLPKRKVAVMVGYCGTGYHGMQYNPPNRTIEAELFEAFVKAGAISRANS 111
Query: 105 GNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASF 164
+ ++ + R+ARTDKGV A G V+S + I+ P + +++N +LP IR++G RV +F
Sbjct: 112 TDLKKNGFMRAARTDKGVHAGGNVISLKLIIEDPAIKDKINEHLPPGIRVWGISRVNKAF 171
Query: 165 NAKKFCDQRRYVYLLPVFAL 184
+ +K C R Y YLLP ++
Sbjct: 172 DCRKLCGSRWYEYLLPTYSF 191
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 74/121 (61%), Gaps = 7/121 (5%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
RF +K Y+G HNFHN+T +DPS R++ I+ V+ +++ ++ GQS
Sbjct: 288 RFREAMKQYLGPHNFHNYTLGKDFKDPSTVRFMKDITVSDPFVIGEMKTEWVSIKIHGQS 347
Query: 403 FMLHQIRKMIGLAVAVVR-NCAPQSLIET-ALQKDVNINVPTAPEVGLYLDECIFASYNK 460
FMLHQIRKMI +A V R NC+P+ + ++ QK IN+P AP +GL L+ ++ YNK
Sbjct: 348 FMLHQIRKMISMATLVARCNCSPERIAQSYGPQK---INIPKAPALGLLLESPVYEGYNK 404
Query: 461 K 461
+
Sbjct: 405 R 405
>gi|241956578|ref|XP_002421009.1| tNA-uridine isomerase, putative; tRNA pseudouridine synthase,
putative; tRNA pseudouridylate synthase, putative
[Candida dubliniensis CD36]
gi|223644352|emb|CAX41165.1| tNA-uridine isomerase, putative [Candida dubliniensis CD36]
Length = 488
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 83/128 (64%), Gaps = 2/128 (1%)
Query: 59 RRKIAIFFAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+RK+A+ YCG GY GMQ +P KTIE D+ +A+ +GA+S + + ++ + R+A
Sbjct: 38 KRKVAVMLGYCGSGYNGMQVQNDPNVKTIEKDIYDAMTKAGAISLENSVDLKKSGFQRAA 97
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
RTDKGV A G V+S + I+ P ++ ++N LP QIRI+G +R T F+ +K C R Y
Sbjct: 98 RTDKGVHAAGNVISLKMIIEDPNIINKINDLLPKQIRIWGIQRTTKGFDCRKCCSSRIYE 157
Query: 177 YLLPVFAL 184
YLLP F+L
Sbjct: 158 YLLPTFSL 165
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
+F ++K Y G+HNFHNFT +D SA R+II +EG +++ ++ GQSFM
Sbjct: 271 QFREVMKQYEGTHNFHNFTIGKPFKDTSANRFIIKTLISDPFVIEGTEWISIKIHGQSFM 330
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
LHQIRKMI +A ++R P ++I Q IN+P AP +GL L+ +F YN K
Sbjct: 331 LHQIRKMIAMATLIIRLNLPSNIINNFFQSK-KINIPKAPALGLLLENPVFDGYNIK 386
>gi|50287019|ref|XP_445939.1| hypothetical protein [Candida glabrata CBS 138]
gi|74637780|sp|Q6FV05.1|PUS1_CANGA RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|49525245|emb|CAG58858.1| unnamed protein product [Candida glabrata]
Length = 549
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 84/126 (66%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ + + ++ ++ R+ART
Sbjct: 86 KRKVAVMIGYCGTGYHGMQYNPPNPTIEAALFKAFVDAGAISKANSNDLKKNNFMRAART 145
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + I+ P +++++N+NLP IRI+ +RV +F+ +K C R Y YL
Sbjct: 146 DKGVHAGGNLISLKMIIEDPEIMDKINANLPEGIRIWDIERVNKAFDCRKMCSSRWYEYL 205
Query: 179 LPVFAL 184
LP ++L
Sbjct: 206 LPTYSL 211
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
+F + Y+G+HNFHNFT + +DPSA R++ I V+ +++ ++ GQS
Sbjct: 308 KFRAAMNQYLGAHNFHNFTLGKEFKDPSAIRFMKEIKVSDPFVIGDAKAEWVSIKIHGQS 367
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FMLHQIRKMI +A + R P I A IN+P AP +GL L+ +F SYNK+
Sbjct: 368 FMLHQIRKMISMATLIARCGTPVERISQAFGPQ-KINIPKAPALGLLLEAPVFESYNKR 425
>gi|322695818|gb|EFY87620.1| tRNA pseudouridine synthase [Metarhizium acridum CQMa 102]
Length = 592
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 81/126 (64%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N TIE DL A + A+S+ + +PR+ AR ART
Sbjct: 114 KRKVAVMIGYSGTGYKGMQVNGDEPTIERDLFRAFIDAKAISKANADDPRKSSLARCART 173
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ +V+++N++LP QIRI+G +R SFN ++CD R Y YL
Sbjct: 174 DKGVHAAGNVISLKLIIEDEDIVDKINAHLPEQIRIWGIQRTNNSFNCYQYCDSRFYEYL 233
Query: 179 LPVFAL 184
LP + L
Sbjct: 234 LPSYCL 239
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEG-IDFLKCEVV 399
E +R ++L Y G++NFHNFT + DPSARR+I SF + + G ++L +V
Sbjct: 378 ERLRRLQQVLDKYTGTYNFHNFTIQKTFSDPSARRHIKSFTVNPKPIIIGDTEWLSLKVH 437
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
GQSFM+HQIRKM+GLA +VR + + Q+ + +P AP +GL L+ +F +YN
Sbjct: 438 GQSFMMHQIRKMVGLASLMVRCGTTLDRVGDSYQEQ-KMAIPKAPGLGLLLERPVFENYN 496
Query: 460 KKWKDS 465
++ +DS
Sbjct: 497 RRARDS 502
>gi|336258196|ref|XP_003343916.1| hypothetical protein SMAC_09382 [Sordaria macrospora k-hell]
gi|380087004|emb|CCC14503.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 634
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 82/126 (65%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY G+Q N KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 125 KRKVAVLIGYAGTGYHGIQINHKEKTIEGDLFAAFVKAGAISKANADDPKKSSLVRCART 184
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A V+S + ++ +VE++NS+LP QI+++G +RVT F+ + CD R Y YL
Sbjct: 185 DKGVHAAANVLSLKLIVEDEDIVEKINSHLPDQIKVWGIQRVTNGFSCYQACDSRWYEYL 244
Query: 179 LPVFAL 184
+P +AL
Sbjct: 245 MPSYAL 250
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 2/122 (1%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVGQS 402
++ L Y+G+HNFHN+T DPSARR+I SF + + + ++L +V GQS
Sbjct: 418 EKLQEALNQYLGTHNFHNYTILKSHTDPSARRHIKSFQVNPTPIRINDTEWLSLKVHGQS 477
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
FM+HQIRKM+ +AV +VR AP SLI + I++P AP +GL L+ +F NKK+
Sbjct: 478 FMMHQIRKMVAMAVLIVRCGAPMSLINESYGP-RRISIPKAPGLGLMLERPVFDVSNKKF 536
Query: 463 KD 464
K+
Sbjct: 537 KE 538
>gi|47208274|emb|CAF91572.1| unnamed protein product [Tetraodon nigroviridis]
Length = 375
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 84/130 (64%), Gaps = 6/130 (4%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
++K+A+ AY G GY GMQ+NPG+ +TIE DL AL SG + E + ++ + R
Sbjct: 74 KKKVALLLAYSGKGYYGMQRNPGSSEFRTIEDDLVAALVKSGCIPENHAEDMKKMSFQRC 133
Query: 116 ARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
ARTDKGVSA GQVVS + + ID L E++N +LP QIR+ G KRVT FN+K CD R
Sbjct: 134 ARTDKGVSAAGQVVSLKLWLID--DLAEKINQHLPPQIRVLGVKRVTQGFNSKNNCDART 191
Query: 175 YVYLLPVFAL 184
Y Y+LP A
Sbjct: 192 YAYMLPTVAF 201
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 50/83 (60%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E +R NR+ Y G+HNFHNFT++ DPSARRY+ +F V G
Sbjct: 220 ETLQRVNRLFALYKGTHNFHNFTSQKAPNDPSARRYVTHVCCGEPFMGGDTEFAVITVRG 279
Query: 401 QSFMLHQIRKMIGLAVAVVRNCA 423
QSFMLHQIRKMIGL +AVV+ A
Sbjct: 280 QSFMLHQIRKMIGLVIAVVKGYA 302
>gi|410930966|ref|XP_003978868.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Takifugu rubripes]
Length = 390
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 6/130 (4%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
++K+A+ AY G GY GMQ+NPG+ +TIE DL AL SG + + + ++ + R
Sbjct: 43 KKKVALLMAYSGKGYYGMQRNPGSSEFRTIEDDLVAALVKSGCIPQNHGDDMKKMSFQRC 102
Query: 116 ARTDKGVSAVGQVVSGRFC-IDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
ARTDKGVSA GQVVS + ID L E++N +LP QIRI G KRVT FN+K CD R
Sbjct: 103 ARTDKGVSAAGQVVSLKLLLID--DLTEKINEHLPPQIRILGVKRVTQGFNSKNNCDART 160
Query: 175 YVYLLPVFAL 184
Y Y+LP A
Sbjct: 161 YAYMLPTVAF 170
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 5/124 (4%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E +R N + HY G+HNFHNFT++ DPSARRYI +F V G
Sbjct: 189 ETLQRVNHLFAHYKGTHNFHNFTSQKAPNDPSARRYITHMLCGEPFIRGDTEFAVITVRG 248
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETA--LQKDVNINVPTAPEVGLYLDECIFASY 458
QSFMLHQIRKMIGL +AV++ A + ++E + LQK ++VP AP +GL L++ F Y
Sbjct: 249 QSFMLHQIRKMIGLVIAVIKGYAGEEVMERSWGLQK---VDVPKAPGLGLVLEKVHFDRY 305
Query: 459 NKKW 462
NK++
Sbjct: 306 NKRF 309
>gi|301091109|ref|XP_002895746.1| tRNA pseudouridine synthase [Phytophthora infestans T30-4]
gi|262096658|gb|EEY54710.1| tRNA pseudouridine synthase [Phytophthora infestans T30-4]
Length = 470
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 85/142 (59%), Gaps = 8/142 (5%)
Query: 43 PAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSER 102
PAA TKR + ++ A+CG Y GMQ N G KTIE +LE ALF +G ++E
Sbjct: 60 PAANAPSMPTKR------RYGLWVAFCGKNYCGMQMNEGVKTIEAELERALFEAGGIAES 113
Query: 103 DRGNPRRYDWARSARTDKGVSAVGQVVSGRFCI--DPPGLVERLNSNLPTQIRIFGYKRV 160
+ G ++ W+R+ARTDKGV A GQ+++ + + D G + ++++ LP IR+ V
Sbjct: 114 NYGYLQKIGWSRAARTDKGVHAAGQLLTAKLHVGDDIAGFMAKVDAALPEDIRVMHMVTV 173
Query: 161 TASFNAKKFCDQRRYVYLLPVF 182
T +FNAK CDQR Y YL P F
Sbjct: 174 TKNFNAKMTCDQRTYEYLAPTF 195
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
Query: 335 GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFL 394
F +E ++ N LK YVG+HNFHNFT++ + +P A R+IISF A+ ++++
Sbjct: 246 AFRLSDEILEQLNATLKQYVGTHNFHNFTSKMEPTNPQANRFIISFEAERPFVQNDMEWV 305
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454
+ VVGQSF+LH IRKMIG AV VV + S IE A++ +++P AP VGLYL +
Sbjct: 306 RLRVVGQSFLLHHIRKMIGTAVEVVSGVSDPSTIERAMEL-TKMDLPKAPSVGLYLAQAH 364
Query: 455 FASYNKKWKDS 465
F YN K +D+
Sbjct: 365 FEVYNMKMEDT 375
>gi|363749077|ref|XP_003644756.1| hypothetical protein Ecym_2190 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888389|gb|AET37939.1| Hypothetical protein Ecym_2190 [Eremothecium cymbalariae
DBVPG#7215]
Length = 571
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%)
Query: 40 DLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAV 99
D P A AD +K ++K+A+ YCG GY GMQ NP TIE L +A +GA+
Sbjct: 90 DETPTVALADDGSKEIRLPKKKVAVMVGYCGTGYHGMQYNPPNPTIEAALFDAFVKAGAI 149
Query: 100 SERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKR 159
S+ + + ++ + R+ARTDKGV A G V+S + I+ + E++N LP IR++ R
Sbjct: 150 SKANSTDLKKNGFMRAARTDKGVHAGGNVISLKLIIEDSSIREKINDILPPSIRVWSINR 209
Query: 160 VTASFNAKKFCDQRRYVYLLPVFAL 184
V +F+++K C R Y YLLP ++L
Sbjct: 210 VNKAFDSRKLCSSRWYEYLLPTYSL 234
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 97/194 (50%), Gaps = 13/194 (6%)
Query: 273 ESVMVENANSESVNETLVESRTSETVQNENTDLSLD-LDSKND--SKVMAEERSVNGEEK 329
ESV + ++V T E E V E T S + D ND KV ++ N +
Sbjct: 263 ESVQFWKSFEKTVKATFTEQELQEIV--EYTPPSREAFDESNDLYQKVKQYKKIENSHRR 320
Query: 330 LLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVN 387
+ S E + +F L+ Y+G HNFHNFT +DPSA R+I ++ V+
Sbjct: 321 AYRVS-----ESKLNKFRSSLEQYLGHHNFHNFTLGKDFKDPSACRFIKEVTVSEPFVIG 375
Query: 388 VEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVG 447
+++ ++ GQSFMLHQIRKMI +A + R P S I A IN+P AP +G
Sbjct: 376 DMKTEWVSIKIHGQSFMLHQIRKMISMATLITRCGCPISRISQAYGPQ-KINIPKAPALG 434
Query: 448 LYLDECIFASYNKK 461
L L+ ++ YNK+
Sbjct: 435 LLLEFPVYDGYNKR 448
>gi|344230875|gb|EGV62760.1| hypothetical protein CANTEDRAFT_115504 [Candida tenuis ATCC 10573]
Length = 508
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 87/147 (59%), Gaps = 2/147 (1%)
Query: 40 DLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSG 97
D P + K + +RK+A YCG GY GMQ NP KTIEG+L +A ++G
Sbjct: 49 DYQPRVDEEGNVIKSERRPKRKVACMIGYCGTGYNGMQIQNNPDVKTIEGELFQAFINAG 108
Query: 98 AVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGY 157
A+S+ + + ++ + R+ARTDKGV A G V+S + I+ +++++N LP QIRI+G
Sbjct: 109 AISQENSNDLKKNGFMRAARTDKGVHAAGNVISCKLIIEDEDILQKINKALPEQIRIWGI 168
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFAL 184
+R SF+ +K C R Y YLLP +
Sbjct: 169 ERTNRSFDCRKMCSSRVYEYLLPTHSF 195
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFML 405
F LK Y GSHNFHN+T +DPSARRY+ S + +++ ++ GQSFML
Sbjct: 298 FRDALKQYEGSHNFHNYTVGKNYKDPSARRYMKSTKVSEPFIIGDTEWVSIKIHGQSFML 357
Query: 406 HQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
HQIRKMI +AV +VR P + I +N+P AP +GL L+ ++ +YN
Sbjct: 358 HQIRKMIAMAVMLVRTGCPATRINETFS-STRVNIPKAPALGLLLENPVYETYN 410
>gi|327283197|ref|XP_003226328.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Anolis carolinensis]
Length = 406
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 85/136 (62%), Gaps = 7/136 (5%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPG---AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RKI + AY G GY GMQ+N G KTIE DL AL SG + E + ++ + R
Sbjct: 60 KRKIVLLVAYSGKGYHGMQRNVGNSQFKTIEDDLVLALIQSGCIPENHGEDMKKMSFQRC 119
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
ARTDKGVSA GQ+VS + + +++++N++LP IRI G KRVT FN+K CD R Y
Sbjct: 120 ARTDKGVSAAGQIVSLKVWL-IEDILQKINNHLPPHIRILGLKRVTGGFNSKNKCDARTY 178
Query: 176 VYLLPVFALDSSSHRD 191
Y+LP FA +H+D
Sbjct: 179 SYMLPTFAF---AHKD 191
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 80/116 (68%), Gaps = 1/116 (0%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLH 406
NR+L Y G+HNFHNFT++ +DPSA+RYI+ + +G++F +V GQSFM+H
Sbjct: 210 NRLLAGYKGTHNFHNFTSQKGPKDPSAKRYIMEMYCEEPFVRQGMEFAVMKVKGQSFMMH 269
Query: 407 QIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
QIRKMIGL +A+V+ A +S++E + ++ ++VP AP +GL L+ F YNK++
Sbjct: 270 QIRKMIGLVIAIVKGYASESIMEQSWGEE-KVDVPKAPGLGLVLERVHFEKYNKRF 324
>gi|344230876|gb|EGV62761.1| hypothetical protein CANTEDRAFT_115504 [Candida tenuis ATCC 10573]
Length = 559
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 87/147 (59%), Gaps = 2/147 (1%)
Query: 40 DLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSG 97
D P + K + +RK+A YCG GY GMQ NP KTIEG+L +A ++G
Sbjct: 49 DYQPRVDEEGNVIKSERRPKRKVACMIGYCGTGYNGMQIQNNPDVKTIEGELFQAFINAG 108
Query: 98 AVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGY 157
A+S+ + + ++ + R+ARTDKGV A G V+S + I+ +++++N LP QIRI+G
Sbjct: 109 AISQENSNDLKKNGFMRAARTDKGVHAAGNVISCKLIIEDEDILQKINKALPEQIRIWGI 168
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFAL 184
+R SF+ +K C R Y YLLP +
Sbjct: 169 ERTNRSFDCRKMCSSRVYEYLLPTHSF 195
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFML 405
F LK Y GSHNFHN+T +DPSARRY+ S + +++ ++ GQSFML
Sbjct: 298 FRDALKQYEGSHNFHNYTVGKNYKDPSARRYMKSTKVSEPFIIGDTEWVSIKIHGQSFML 357
Query: 406 HQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
HQIRKMI +AV +VR P + I +N+P AP +GL L+ ++ +YN
Sbjct: 358 HQIRKMIAMAVMLVRTGCPATRINETFS-STRVNIPKAPALGLLLENPVYETYN 410
>gi|336470149|gb|EGO58311.1| hypothetical protein NEUTE1DRAFT_64057 [Neurospora tetrasperma FGSC
2508]
gi|350290158|gb|EGZ71372.1| pseudouridine synthase [Neurospora tetrasperma FGSC 2509]
Length = 629
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 82/126 (65%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY G+Q N KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 120 KRKVAVLIGYAGTGYHGIQINHKEKTIEGDLFAAFVKAGAISKANADDPKKSSLVRCART 179
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A V+S + ++ +V+++NS+LP QI+++G +RVT F+ + CD R Y YL
Sbjct: 180 DKGVHAAANVLSLKLIVEDEDIVDKINSHLPDQIKVWGIQRVTNGFSCYQACDSRWYEYL 239
Query: 179 LPVFAL 184
+P +AL
Sbjct: 240 MPSYAL 245
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVGQS 402
++ L Y+G+HNFHN+T DPSARR+I SF + + + ++L +V GQS
Sbjct: 413 EKLQEALNQYLGTHNFHNYTILKSHTDPSARRHIKSFQVNPTPIRINDTEWLSLKVHGQS 472
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
FM+HQIRKM+ +AV +VR AP SL+ + I++P AP +GL L+ +F NKK+
Sbjct: 473 FMMHQIRKMVAMAVLIVRCGAPMSLVNESYGPR-RISIPKAPGLGLMLERPVFDVSNKKF 531
Query: 463 KDSHEE 468
K+ +E
Sbjct: 532 KELGKE 537
>gi|171685180|ref|XP_001907531.1| hypothetical protein [Podospora anserina S mat+]
gi|170942551|emb|CAP68202.1| unnamed protein product [Podospora anserina S mat+]
Length = 615
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 82/126 (65%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY G+Q N KTIEGD+ A +GA+S+ + +P++ R ART
Sbjct: 119 KRKVAVLIGYAGTGYHGIQINHKEKTIEGDIFAAFVAAGAISKANADDPKKSSLVRCART 178
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + ++ +VE++NS+LP QIRI+G +R +F+ + CD R Y YL
Sbjct: 179 DKGVHAAGNVLSLKLIVEDEDIVEKINSHLPEQIRIWGIQRTVNAFSCYQSCDSRWYEYL 238
Query: 179 LPVFAL 184
+P ++L
Sbjct: 239 MPSYSL 244
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 77/119 (64%), Gaps = 2/119 (1%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVGQS 402
+R + L Y+G+HN+HN+T +D SA+R+I SF A++ + + ++L +V GQS
Sbjct: 402 ERLQQALNLYLGTHNYHNYTVMKSFKDASAKRHIKSFEANTTPIQIGDTEWLSLKVHGQS 461
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FM+HQIRKM+ +AV VVR AP LI+ + I++P AP +GL L+ +F YNK+
Sbjct: 462 FMMHQIRKMVAMAVMVVRCGAPLDLIKESYGPR-RISIPKAPGLGLMLERPMFTEYNKR 519
>gi|408399081|gb|EKJ78206.1| hypothetical protein FPSE_01667 [Fusarium pseudograminearum CS3096]
Length = 602
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 81/126 (64%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N KTIE DL +A +GA+S+ + +P++ R ART
Sbjct: 106 KRKVAVMIGYAGTGYKGMQVNGNEKTIEADLFKAFVAAGAISKANADDPKKSSLVRCART 165
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ +V+++N+ LP QIRI+G +R +F+ + CD R Y YL
Sbjct: 166 DKGVHAAGNVISLKLIIEDEDIVDKINAELPEQIRIWGLQRTNNAFSCYQTCDSRWYEYL 225
Query: 179 LPVFAL 184
+P + L
Sbjct: 226 MPSYCL 231
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 77/130 (59%), Gaps = 10/130 (7%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGI-----DFLK 395
E +R L Y G+ NFHN+T + D SA+R+I SF +VN + I ++L
Sbjct: 383 ERLERLQEALNMYNGTRNFHNYTVQKSFFDASAKRHIKSF----IVNPKPIIINDTEWLS 438
Query: 396 CEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIF 455
+V GQSFM+HQIRKM+GLA +VR P I+ + Q + + +P AP +GL L+ +F
Sbjct: 439 LKVHGQSFMMHQIRKMVGLASLIVRCGTPMERIKESYQ-NQKMAIPKAPGLGLLLERPVF 497
Query: 456 ASYNKKWKDS 465
+YN+K +S
Sbjct: 498 HNYNRKATES 507
>gi|46124417|ref|XP_386762.1| hypothetical protein FG06586.1 [Gibberella zeae PH-1]
Length = 602
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 81/126 (64%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N KTIE DL +A +GA+S+ + +P++ R ART
Sbjct: 106 KRKVAVMIGYAGTGYKGMQVNGNEKTIEADLFKAFVAAGAISKANADDPKKSSLVRCART 165
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ +V+++N+ LP QIRI+G +R +F+ + CD R Y YL
Sbjct: 166 DKGVHAAGNVISLKLIIEDEDIVDKINAELPEQIRIWGLQRTNNAFSCYQTCDSRWYEYL 225
Query: 179 LPVFAL 184
+P + L
Sbjct: 226 MPSYCL 231
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 77/130 (59%), Gaps = 10/130 (7%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGI-----DFLK 395
E +R L Y G+ NFHN+T + D SA+R+I SF +VN + I ++L
Sbjct: 383 ERLERLQEALNMYNGTRNFHNYTVQKSFFDASAKRHIKSF----IVNPKPIIINDTEWLS 438
Query: 396 CEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIF 455
+V GQSFM+HQIRKM+GLA +VR P I+ + Q + + +P AP +GL L+ +F
Sbjct: 439 LKVHGQSFMMHQIRKMVGLASLIVRCGTPMERIKESYQ-NQKMAIPKAPGLGLLLERPVF 497
Query: 456 ASYNKKWKDS 465
+YN+K +S
Sbjct: 498 HNYNRKATES 507
>gi|307184937|gb|EFN71202.1| tRNA pseudouridine synthase A [Camponotus floridanus]
Length = 330
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 89/172 (51%), Gaps = 5/172 (2%)
Query: 13 SPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVG 72
S ++ P +PD + DD + A T Q KR+ AI Y G
Sbjct: 2 STTVDPIAQPDINTMHGEKRQMLDDGNE---TEAKIQKTEIMQKIKRKNHAILLGYLGKD 58
Query: 73 YQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR 132
Y GMQ+NPG KTIE DL AL + ++ N R + R+ARTDKGVSA+ Q+VS +
Sbjct: 59 YYGMQRNPGMKTIEEDLVTALLKADLITTEHFKNIRSISFQRAARTDKGVSAIRQIVSLK 118
Query: 133 FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
P V +N LP I+IFG KRVT FN+K CD R Y Y++P FA
Sbjct: 119 LPEKPDKTV--INKFLPDVIKIFGIKRVTKGFNSKNQCDARTYRYIIPTFAF 168
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 65/110 (59%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E R N ILK G+HNFHNFT++ K DP A+RYII F G++F E+ G
Sbjct: 207 ESLNRLNSILKLMEGTHNFHNFTSKVKPLDPRAQRYIIKFHCVETFISNGMEFAILEIKG 266
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
QSFMLHQIRKM+ + V + RN + +I A + + +P AP +GL L
Sbjct: 267 QSFMLHQIRKMVAVVVGIARNIISEEIINEAFKTMDRLEIPIAPSLGLCL 316
>gi|307214388|gb|EFN89459.1| tRNA pseudouridine synthase A [Harpegnathos saltator]
Length = 364
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 81/139 (58%), Gaps = 12/139 (8%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E R N ILK + G+HNFHNFT++TK DP ARRYII+F +GI+F+ EV G
Sbjct: 157 ESLNRLNSILKLFEGTHNFHNFTSKTKPLDPRARRYIINFHCVDTFVSKGIEFVVLEVKG 216
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFMLHQIRKM+ +AV RN P+ I A K V + +P AP +GL L + +Y K
Sbjct: 217 QSFMLHQIRKMVATVIAVARNIIPEETINEAF-KTVKMEIPIAPSLGLCLCHVHYDNYAK 275
Query: 461 K-----------WKDSHEE 468
+ WK+ EE
Sbjct: 276 RYGTDGMHETLDWKECEEE 294
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 101/199 (50%), Gaps = 20/199 (10%)
Query: 66 FAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
Y G Y GMQ+NPG KTIE DL AL + ++ N R ++ R+ARTDKGVSAV
Sbjct: 2 LGYLGKNYYGMQRNPGMKTIEEDLVNALLKANLITTEQFENLRTINFQRAARTDKGVSAV 61
Query: 126 GQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
Q+VS + +P + +N LP IR+FG KRVT FN+K CD R Y Y++P F
Sbjct: 62 RQIVSLKLPENPDKTI--INQFLPDVIRVFGIKRVTKGFNSKNQCDARTYRYIIPSFTFA 119
Query: 186 SSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVK 245
+ L G E ++ +ER +++ + G+ P D S+ S +
Sbjct: 120 MEDQ-------SLLKMGEE----VDINERIKQISTIDGE-------PYIDYRLSIESLNR 161
Query: 246 VDTVVSTCNGDRHNTNLES 264
+++++ G + N S
Sbjct: 162 LNSILKLFEGTHNFHNFTS 180
>gi|85091723|ref|XP_959041.1| hypothetical protein NCU07528 [Neurospora crassa OR74A]
gi|28920438|gb|EAA29805.1| hypothetical protein NCU07528 [Neurospora crassa OR74A]
Length = 625
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 82/126 (65%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY G+Q N KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 120 KRKVAVLIGYAGTGYHGIQINHKEKTIEGDLFAAFVKAGAISKANADDPKKSSLVRCART 179
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A V+S + ++ +V+++NS+LP QI+++G +RVT F+ + CD R Y YL
Sbjct: 180 DKGVHAAANVLSLKLIVEDEDIVDKINSHLPDQIKVWGIQRVTNGFSCYQACDSRWYEYL 239
Query: 179 LPVFAL 184
+P +AL
Sbjct: 240 MPSYAL 245
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVGQS 402
++ L Y+G+HNFHN+T DPSARR+I SF + + + ++L +V GQS
Sbjct: 409 EKLQEALNQYLGTHNFHNYTILKSHTDPSARRHIKSFQVNPTPIRINDTEWLSLKVHGQS 468
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
FM+HQIRKM+ +AV +VR AP SL+ + I++P AP +GL L+ +F NKK+
Sbjct: 469 FMMHQIRKMVAMAVLIVRCGAPMSLVNESYGPR-RISIPKAPGLGLMLERPVFDVSNKKF 527
Query: 463 KDSHEE 468
K+ +E
Sbjct: 528 KELGKE 533
>gi|213513998|ref|NP_001134221.1| tRNA pseudouridine synthase A [Salmo salar]
gi|209731596|gb|ACI66667.1| tRNA pseudouridine synthase A [Salmo salar]
Length = 392
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 82/129 (63%), Gaps = 4/129 (3%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RK+ + AY G GY GMQ+N G+ KTIE +L AL SG + + + ++ + R
Sbjct: 49 KRKVVLLLAYSGKGYYGMQRNAGSSQFKTIEDELVTALIKSGCIPDNHGDDMKKMSFQRC 108
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
ARTDKGVSA GQVVS + + ++E++NSNLP QIR+ G KRVT FN+K CD R Y
Sbjct: 109 ARTDKGVSAAGQVVSLKLWM-IEDVMEKINSNLPPQIRVLGLKRVTGGFNSKNSCDARTY 167
Query: 176 VYLLPVFAL 184
Y+LP A
Sbjct: 168 SYMLPTVAF 176
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E +R N++ Y G+HNFHNFT++ A DPSARRYI G +F + V G
Sbjct: 194 ETLQRVNQLFGSYKGTHNFHNFTSQKAAWDPSARRYITEMSCGEPFVRGGAEFAEITVRG 253
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKMIGL +AVV+ + +++ + ++ ++VP AP +GL L++ F YNK
Sbjct: 254 QSFMMHQIRKMIGLVIAVVKGYSGDEVLKRSWGEE-KVDVPKAPGLGLVLEKVHFDRYNK 312
Query: 461 KW 462
++
Sbjct: 313 RF 314
>gi|387019437|gb|AFJ51836.1| tRNA pseudouridine synthase A, mitochondrial-like [Crotalus
adamanteus]
Length = 404
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 84/136 (61%), Gaps = 7/136 (5%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
++K+ + YCG GY GMQ+N +TIE DL AL SG + E + ++ + R
Sbjct: 59 KKKVVLLLVYCGKGYHGMQRNVKTSQYRTIEDDLVSALIKSGCIPENHGEDMKKMSFQRC 118
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
ARTDKGVSA GQ+VS + + +++++N +LP+ IRI G KRVT FN+K CD R Y
Sbjct: 119 ARTDKGVSAAGQIVSLKVWL-IEDILQKINEHLPSHIRILGLKRVTGKFNSKNRCDARTY 177
Query: 176 VYLLPVFALDSSSHRD 191
Y+LP FA +H+D
Sbjct: 178 SYMLPTFAF---AHKD 190
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLH 406
N +L Y G+HNFHNFT++ DPSA+RYI+ + G++F +V GQSFM+H
Sbjct: 209 NHLLACYKGTHNFHNFTSQKGPRDPSAKRYIMEMFCEEPFVRNGMEFAVVKVKGQSFMMH 268
Query: 407 QIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKD 464
QIRKMIGL +A+V+ A S++E + ++ +++P AP +GL L+ F SYN+++ D
Sbjct: 269 QIRKMIGLVIAIVKGHATLSILEQSWGEE-RVDIPKAPGLGLILERVHFESYNQRFGD 325
>gi|254583001|ref|XP_002499232.1| ZYRO0E07106p [Zygosaccharomyces rouxii]
gi|238942806|emb|CAR30977.1| ZYRO0E07106p [Zygosaccharomyces rouxii]
Length = 537
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 82/132 (62%)
Query: 53 KRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDW 112
K + +RK+A+ YCG GY GMQ NP TIE +L A +GA+S+ + + ++ +
Sbjct: 68 KERRLPKRKVAVMIGYCGTGYHGMQHNPPNLTIESELFTAFVEAGAISKANSTDLKKNGF 127
Query: 113 ARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
R+ARTDKGV A G ++S + I+ P + E++N LP IR++ KRV +F+ +K C
Sbjct: 128 MRAARTDKGVHAGGNLISLKLIIEDPQIKEKINEKLPEGIRVWDIKRVNKAFDCRKMCSS 187
Query: 173 RRYVYLLPVFAL 184
R Y YLLP ++L
Sbjct: 188 RWYEYLLPTYSL 199
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCE 397
+E+ K+F ++ Y+G+HNFHNFT ++ SA RY+ I V+ +++ +
Sbjct: 291 QEKLKKFRSTMEQYLGAHNFHNFTLGKDFKESSAVRYMKEIKVSEPFVIGDAKTEWVSIK 350
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFAS 457
+ GQSFMLHQIRKMI +A + R P I A +N+P AP +GL L+ +F
Sbjct: 351 IHGQSFMLHQIRKMISMATLMTRCGCPTDRISEAYGPQ-KLNIPKAPALGLLLESPVFDG 409
Query: 458 YN 459
YN
Sbjct: 410 YN 411
>gi|380481090|emb|CCF42047.1| tRNA pseudouridine synthase A [Colletotrichum higginsianum]
Length = 622
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 89/149 (59%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFH 95
D + +P+ A+ +RK+A+ Y G GY+GMQ N KTIEGDL +A
Sbjct: 100 DGNPEAVPSPFSAEEIAAEGRRPKRKVAVMVGYSGTGYKGMQINNEEKTIEGDLFKAFVA 159
Query: 96 SGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIF 155
+GA+S+ + + ++ R ARTDKGV A G V+S + I+ +V+++N+NLP QIR++
Sbjct: 160 AGAISKANADDHKKSSLVRCARTDKGVHAAGNVISLKLIIEDEEIVDKINANLPDQIRVW 219
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
G +R SF+ + CD R Y YLLP + L
Sbjct: 220 GIQRTNNSFSCYQTCDSRWYEYLLPTYCL 248
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 74/117 (63%), Gaps = 2/117 (1%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADS-VVNVEGIDFLKCEVVGQSFMLHQI 408
L Y G+ NFHN+T + +DPSA+R+I SF ++ + + +++ +V GQSFM+HQI
Sbjct: 414 LNEYCGTINFHNYTVQKSFKDPSAKRHIKSFQVNTQPIQIRDTEWVSLKVHGQSFMMHQI 473
Query: 409 RKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDS 465
RKM+G+A VVR P I+ + I +P AP +GL L+ +F +YN++ KD+
Sbjct: 474 RKMVGMAALVVRCATPLERIKQSYGP-TRIAIPKAPGLGLLLERPVFDAYNRRAKDN 529
>gi|11464733|gb|AAG35307.1| pseudouridine synthase 1 [Mus musculus]
Length = 411
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 108/206 (52%), Gaps = 32/206 (15%)
Query: 10 KLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYC 69
K+P P+L+ Q P R + E G D R+L KR KI + AY
Sbjct: 5 KVP-PALASHQ---PDRKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYS 59
Query: 70 GVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK------ 120
G GY GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDK
Sbjct: 60 GKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKPLRTSA 119
Query: 121 ------------GVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
GVSA GQVVS + + ID +++++NS+LP+ IRI G KRVT FN+K
Sbjct: 120 CFCLYTGFLFHWGVSAAGQVVSLKVWLID--DILDKINSHLPSHIRILGLKRVTGGFNSK 177
Query: 168 KFCDQRRYVYLLPVFALDSSSHRDRE 193
CD R Y Y+LP FA +H+DR+
Sbjct: 178 NKCDARTYCYMLPTFAF---AHKDRD 200
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 211 ETLQQVNRLLACYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 270
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 271 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 329
Query: 461 KW 462
++
Sbjct: 330 RF 331
>gi|302893420|ref|XP_003045591.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256726517|gb|EEU39878.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 616
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 81/126 (64%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N KTIE DL +A +GA+S+ + +P++ R ART
Sbjct: 113 KRKVAVMIGYAGTGYKGMQVNGNEKTIEADLFKAFVAAGAISKANADDPKKSSLVRCART 172
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ +++++N+ LP QIRI+G +R +F+ + CD R Y YL
Sbjct: 173 DKGVHAAGNVISLKLIIEDEDIIDKINAELPEQIRIWGIQRTNNAFSCYQTCDSRWYEYL 232
Query: 179 LPVFAL 184
+P + L
Sbjct: 233 MPSYCL 238
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 76/127 (59%), Gaps = 10/127 (7%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGI-----DFLKCEV 398
+R L Y G+ NFHN+T + D SA+R+I SF VVN + I ++L +V
Sbjct: 401 ERLQEALNKYNGTRNFHNYTVQKSYFDASAKRHIKSF----VVNPKPIIINNTEWLSLKV 456
Query: 399 VGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASY 458
GQSFM+HQIRKM+GLA +VR P ++ + Q + + +P AP +GL L+ +F +Y
Sbjct: 457 HGQSFMMHQIRKMVGLASLIVRCGTPLKRMDESYQ-NQKMAIPKAPGLGLLLERPVFHNY 515
Query: 459 NKKWKDS 465
N+K +S
Sbjct: 516 NRKATES 522
>gi|255727174|ref|XP_002548513.1| tRNA pseudouridine synthase 1 [Candida tropicalis MYA-3404]
gi|240134437|gb|EER33992.1| tRNA pseudouridine synthase 1 [Candida tropicalis MYA-3404]
Length = 427
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 79/121 (65%), Gaps = 2/121 (1%)
Query: 66 FAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
YCG GY GMQ +P KTIE D+ EA+ +GA+S+ + + ++ + R+ARTDKGV
Sbjct: 2 LGYCGTGYNGMQVQNDPNVKTIEKDVYEAMVKAGAISKENSTDLKKSQFQRAARTDKGVH 61
Query: 124 AVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
A G V+S + I+ P ++ ++N NLP QIR++G +R T F+ +K C R Y YLLP ++
Sbjct: 62 AAGNVISLKMIIEDPEILNKINDNLPEQIRLWGIQRTTKGFDCRKCCSSRIYEYLLPTYS 121
Query: 184 L 184
L
Sbjct: 122 L 122
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
F ++K Y G+HNFHNFT +D SA RY+IS +EG +++ ++ GQSFM
Sbjct: 227 HFRDVMKQYEGTHNFHNFTIGKPFKDTSASRYMISTKMSDPFVIEGTEWVSIKIHGQSFM 286
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWK 463
LHQIRKMI +A VVR P +I ++D IN+P AP +GL L+ ++ YN K K
Sbjct: 287 LHQIRKMIAMATMVVRLSLPSKIINNFFKED-KINIPKAPALGLLLENPVYDGYNTKLK 344
>gi|357119878|ref|XP_003561660.1| PREDICTED: putative tRNA pseudouridine synthase-like [Brachypodium
distachyon]
Length = 522
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 112/418 (26%), Positives = 180/418 (43%), Gaps = 73/418 (17%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKN---PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
+++++ + Y G Y+G+QK TIE LE A+F +G + E + G ++ W R
Sbjct: 75 RKKRVVLRVGYVGSEYRGLQKQRELSADSTIESVLESAIFKAGGILESNYGKLQKVGWER 134
Query: 115 SARTDKGVSAVGQVVSGRFCI-------DPPG--LVERLNSNLPTQIRIFGYKRVTASFN 165
S+RTDKGV ++ ++S + I DP G L +NSNLP I++F SF+
Sbjct: 135 SSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALANFINSNLPNNIKVFSILPAQRSFD 194
Query: 166 AKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKR 225
++ C R Y YLLP + S E V L N ++K
Sbjct: 195 VRRECLYREYFYLLPAEIIGIKSGCSSEEVEEHLIEFNSILK------------------ 236
Query: 226 TYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTN--LESVESNKTISESVMVENANSE 283
G N + ++ K V++ + T+ + S+ S + +S + A S+
Sbjct: 237 ----GFEGNHPFHNYTARAKYRKVLAGAHRRSKETSSTINSIPSELAVDQSPNDDGATSD 292
Query: 284 SVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEK 343
+ +E L S ++ EN D + D +++ V + R + + E
Sbjct: 293 ADDEHLNFSSVVDSSLPEN-DWNKDNPKHHENHVQIQAR-------------WLHEPNEN 338
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
R + SH F + T + E S ++ ++ C V SF
Sbjct: 339 DRLS-------ASH-FRDIITCSCGE------------LQSSSGIQFVELTICGV---SF 375
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
MLHQIRKM+G AVAV R P+ +IE +L K I +P AP L L + F + NK+
Sbjct: 376 MLHQIRKMVGTAVAVKRGLLPKEIIELSLAKFSRIVLPIAPSEVLILRDNSFCTRNKQ 433
>gi|449303254|gb|EMC99262.1| hypothetical protein BAUCODRAFT_129467 [Baudoinia compniacensis
UAMH 10762]
Length = 708
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 78/126 (61%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ P +TIEGDL A +GA+S+ + +P++ R ART
Sbjct: 146 KRKVAVLIGYSGTGYKGMQITPSERTIEGDLFAAFIRAGAISKANAEDPKKVSLVRCART 205
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + ++ +VER+N L QIR++G +R SF+ + CD R Y YL
Sbjct: 206 DKGVHAAGNMISLKLIVEDEDIVERINKELSPQIRVWGVERTVGSFSCYQACDSRWYEYL 265
Query: 179 LPVFAL 184
+P A
Sbjct: 266 IPSHAF 271
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 17/127 (13%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGI------------D 392
R L +VG+HN+HN+T + DPSA+R+I SF VVN + I +
Sbjct: 492 RIQAALDKFVGTHNYHNYTVQKTYRDPSAKRHIKSF----VVNPKPILIGEGDDEADKSE 547
Query: 393 FLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDE 452
+L +V GQSFM+HQIRKMIG+ +VR + + + +D ++P P +GL L+
Sbjct: 548 WLSLKVHGQSFMMHQIRKMIGMVTLLVRCGSNLDTLSHSFGED-KYSIPKVPGLGLLLER 606
Query: 453 CIFASYN 459
+F SYN
Sbjct: 607 PVFDSYN 613
>gi|193706844|ref|XP_001945291.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Acyrthosiphon pisum]
Length = 441
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
R N ++K ++G HN+HN+T++ K DPSA+RY++SF D +G++ + V GQSFM
Sbjct: 208 RINEVVKSFLGCHNYHNYTSKKKPGDPSAQRYMVSFYCDKPFEKDGVELISLYVRGQSFM 267
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
LHQIRKM+G+ +A+ R A +IE A Q D +++P AP +GL L+E + YN K+
Sbjct: 268 LHQIRKMVGVIIAICRGVAKHDVIERAWQPD-RLDLPIAPGLGLVLEEVHYDKYNGKF 324
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 82/147 (55%), Gaps = 7/147 (4%)
Query: 43 PAAAGADSTTKRQLC-----KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSG 97
P + ++ ++LC KR+K AI AY G+GY G+Q+N G KT+E +L AL
Sbjct: 44 PLSEDDENIVTKKLCIEPRVKRKKCAILLAYSGLGYLGLQRNKGVKTVEEELLLALKSKN 103
Query: 98 AVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGY 157
+++ + + R+ARTDKGVSA+ Q++S D V +N+ LP QIR+
Sbjct: 104 LITDEGFEQIQTMQFQRAARTDKGVSALRQIISLLLPEDVDKQV--INTALPEQIRVLDI 161
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFAL 184
+RVT FN+K CD R Y Y P FA
Sbjct: 162 RRVTKGFNSKNSCDGRTYSYTCPTFAF 188
>gi|157115880|ref|XP_001658327.1| pseudouridylate synthase [Aedes aegypti]
gi|108876737|gb|EAT40962.1| AAEL007354-PA [Aedes aegypti]
Length = 455
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
K+RK I Y GV Y GMQ+NPG KTIE +L A+ +SE P++ + R+A
Sbjct: 113 IKKRKCVIVMGYSGVNYLGMQRNPGTKTIEEELLVAMLKHNWISEEAFNQPQQIQFQRAA 172
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
RTDKGVSA QVVS + P + ++ LN +LP QIR+F KRVT FN+K CD R Y
Sbjct: 173 RTDKGVSAATQVVSIKL---PDNVDIDALNKDLPEQIRVFAVKRVTKGFNSKSNCDARTY 229
Query: 176 VYLLPVFALDSSSHRDRESVMASLGSGNELVKCLE 210
Y LP A + H D+ M S E +K +E
Sbjct: 230 TYTLPTMAF--ALHEDKVD-MESYRVPEERLKVVE 261
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 78/125 (62%), Gaps = 3/125 (2%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEG--IDFLKCE 397
EE K LK + G+ NFHNFT+R + DPS++R+I+SF ++ EG ++F +
Sbjct: 254 EERLKVVEETLKLFEGTKNFHNFTSRKEFIDPSSKRFIMSFECEAPFVPEGSTVEFATLK 313
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFAS 457
+ GQSFMLHQIRKM+GL +AVVR PQ I A ++ VPTAP +GL L+ +
Sbjct: 314 IKGQSFMLHQIRKMVGLTLAVVRGLTPQETIVKAFEEQ-RYGVPTAPGLGLVLNRIHYEK 372
Query: 458 YNKKW 462
YN ++
Sbjct: 373 YNVRY 377
>gi|70906468|ref|NP_001020732.1| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Mus
musculus]
Length = 441
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 108/206 (52%), Gaps = 32/206 (15%)
Query: 10 KLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYC 69
K+P P+L+ Q P R + E G D R+L KR KI + AY
Sbjct: 35 KVP-PALASHQ---PDRKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYS 89
Query: 70 GVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK------ 120
G GY GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDK
Sbjct: 90 GKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKPLRTSA 149
Query: 121 ------------GVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
GVSA GQVVS + + ID +++++NS+LP+ IRI G KRVT FN+K
Sbjct: 150 CFCLYTGFLFHWGVSAAGQVVSLKVWLID--DILDKINSHLPSHIRILGLKRVTGGFNSK 207
Query: 168 KFCDQRRYVYLLPVFALDSSSHRDRE 193
CD R Y Y+LP FA +H+DR+
Sbjct: 208 NKCDARTYCYMLPTFAF---AHKDRD 230
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 241 ETLQQVNRLLACYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 300
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 301 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 359
Query: 461 K 461
+
Sbjct: 360 R 360
>gi|453082482|gb|EMF10529.1| pseudouridine synthase [Mycosphaerella populorum SO2202]
Length = 687
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 81/126 (64%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ + KTIEGDL +A +GA+S+ + +P++ R ART
Sbjct: 132 KRKVAVLIGYSGTGYKGMQISAKEKTIEGDLFQAFIRAGAISKANAEDPKKSSLVRCART 191
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + ++ +VE++N+ L QIR++G +R SF+ + CD R Y YL
Sbjct: 192 DKGVHAAGNMISLKLIVEDTDIVEKINAELSPQIRVWGIERTIGSFSCYQACDSRWYEYL 251
Query: 179 LPVFAL 184
+P +A
Sbjct: 252 MPSYAF 257
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 11/127 (8%)
Query: 343 KKRFNRI---LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGAD--SVVNVEGID----- 392
+KR RI L Y+G+ N+HNFT + +DPS +R+I SF A+ ++ +G D
Sbjct: 469 QKRIERIQNALNKYIGTKNYHNFTIQKTFKDPSVKRHIKSFKANPKPILIGDGPDEEKTE 528
Query: 393 FLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDE 452
+L +V GQSFM+HQIRKM+G+ +VR A ++ + + ++P P +GL L+
Sbjct: 529 WLSLKVHGQSFMMHQIRKMVGMITLLVRAGADLKTMDASFT-ETRFSIPKVPGLGLLLER 587
Query: 453 CIFASYN 459
+F SYN
Sbjct: 588 PVFDSYN 594
>gi|260817697|ref|XP_002603722.1| hypothetical protein BRAFLDRAFT_93048 [Branchiostoma floridae]
gi|229289044|gb|EEN59733.1| hypothetical protein BRAFLDRAFT_93048 [Branchiostoma floridae]
Length = 352
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Query: 31 ATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLE 90
++ T DE + G D +R K+RK+A AY GVGY GMQ+N G KTIE DL
Sbjct: 13 SSQTPTDENTRGESKPGGDPDWERPTAKKRKVACLLAYSGVGYMGMQRNQGFKTIEEDLL 72
Query: 91 EALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPT 150
A + +GA+ + ++ + R ARTDKGVSA GQ+VS + + V+++N L
Sbjct: 73 AAFYKAGAIPKDHMDCMQKMHFQRCARTDKGVSAAGQIVSLKMYMIEDA-VQKINDCLAE 131
Query: 151 QIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
IR+ G KR T F++K CD R Y+Y+LP ++
Sbjct: 132 SIRLIGIKRTTNGFDSKNACDARTYMYVLPTYSF 165
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 79/119 (66%), Gaps = 1/119 (0%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
++ N +L Y G+HNFHNFT+ K +DPSA+RYII + I++ + GQSF
Sbjct: 184 EKVNDVLSAYKGTHNFHNFTSGKKFKDPSAKRYIIESKCLDTFVRDDIEWTVISIKGQSF 243
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
M+HQIRKMIG+ +A+VR AP+S++E A Q+ ++P AP +GL LD+ F YN+K+
Sbjct: 244 MIHQIRKMIGMMLAIVRGLAPRSMLERAWQEG-KCDIPKAPGLGLVLDKVHFDHYNRKY 301
>gi|148688057|gb|EDL20004.1| pseudouridine synthase 1, isoform CRA_b [Mus musculus]
Length = 452
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 108/206 (52%), Gaps = 32/206 (15%)
Query: 10 KLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYC 69
K+P P+L+ Q P R + E G D R+L KR KI + AY
Sbjct: 46 KVP-PALASHQ---PDRKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYS 100
Query: 70 GVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK------ 120
G GY GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDK
Sbjct: 101 GKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKPLRTSA 160
Query: 121 ------------GVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
GVSA GQVVS + + ID +++++NS+LP+ IRI G KRVT FN+K
Sbjct: 161 CFCLYTGFLFHWGVSAAGQVVSLKVWLID--DILDKINSHLPSHIRILGLKRVTGGFNSK 218
Query: 168 KFCDQRRYVYLLPVFALDSSSHRDRE 193
CD R Y Y+LP FA +H+DR+
Sbjct: 219 NKCDARTYCYMLPTFAF---AHKDRD 241
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 252 ETLQQVNRLLACYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 311
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 312 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 370
Query: 461 K 461
+
Sbjct: 371 R 371
>gi|365987776|ref|XP_003670719.1| hypothetical protein NDAI_0F01570 [Naumovozyma dairenensis CBS 421]
gi|343769490|emb|CCD25476.1| hypothetical protein NDAI_0F01570 [Naumovozyma dairenensis CBS 421]
Length = 548
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 84/139 (60%)
Query: 46 AGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRG 105
A ++ K + +RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ +
Sbjct: 66 ADGNAIPKEKRLPKRKVAVMIGYCGTGYHGMQYNPPNPTIEATLFKAFVDAGAISKANSN 125
Query: 106 NPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFN 165
+ ++ + RSARTDKGV A G ++S + I+ P + ++N LP +R++ +RV +F+
Sbjct: 126 DLKKNGFMRSARTDKGVHAGGNLISLKMIIEDPEIKSKINEQLPEGVRVWDIERVNKAFD 185
Query: 166 AKKFCDQRRYVYLLPVFAL 184
+K C R Y YLLP ++L
Sbjct: 186 CRKMCSSRWYEYLLPTYSL 204
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 74/124 (59%), Gaps = 7/124 (5%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCE 397
+E+ +F ++ Y+G+HNFHNFT + +DPSA R++ I V+ +++ +
Sbjct: 296 QEKLTKFRSSMEQYLGAHNFHNFTLGKEFKDPSAIRFMKEIKVSDPFVIGDAKTEWVSIK 355
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETA--LQKDVNINVPTAPEVGLYLDECIF 455
+ GQSFMLHQIRKMI +A V R +P I A +QK +N+P AP +GL L+ +F
Sbjct: 356 IHGQSFMLHQIRKMISMATLVTRCGSPVDRINQAYGVQK---LNIPKAPALGLLLEAPVF 412
Query: 456 ASYN 459
YN
Sbjct: 413 EGYN 416
>gi|432886555|ref|XP_004074895.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Oryzias latipes]
Length = 416
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 81/134 (60%), Gaps = 4/134 (2%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
++K+A+ AY G GY GMQ+NPG +TIE DL AL SG + ++ + R
Sbjct: 74 KKKVALLLAYSGKGYYGMQRNPGTSQFRTIEDDLVSALVKSGCIPGNHGDEMKKMSFQRC 133
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
ARTDKGVSA GQVVS + + ++E++N +LP QIR+ G KRVT FN+K CD R Y
Sbjct: 134 ARTDKGVSAAGQVVSLKVWL-IEDVLEKINEHLPPQIRVLGLKRVTQGFNSKNNCDARTY 192
Query: 176 VYLLPVFALDSSSH 189
Y+LP A +
Sbjct: 193 SYMLPTVAFSQKDY 206
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 76/129 (58%), Gaps = 1/129 (0%)
Query: 334 SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDF 393
+ F E +R NR+ Y G+HNFHNFT++ DPSARRYI +F
Sbjct: 212 AAFRLQTETLQRVNRLFSLYKGTHNFHNFTSQKAPSDPSARRYITEMSCGEPFIRNNCEF 271
Query: 394 LKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDEC 453
V GQSFMLHQIRKMIGL +AV++ A + +IE + ++ ++VP AP +GL L+
Sbjct: 272 AVINVRGQSFMLHQIRKMIGLVIAVIKGYAQEKVIERSWGEE-KVDVPKAPGLGLVLEMV 330
Query: 454 IFASYNKKW 462
F YNK++
Sbjct: 331 HFDRYNKRF 339
>gi|392574501|gb|EIW67637.1| hypothetical protein TREMEDRAFT_14084, partial [Tremella
mesenterica DSM 1558]
Length = 433
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 94/168 (55%), Gaps = 24/168 (14%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPG-AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
++++A+ YCG GY GMQ PG A+TIEG+L +AL +GAVS + + R+ D R+AR
Sbjct: 8 KKRVALLIGYCGTGYSGMQIQPGEAETIEGELFQALVKAGAVSSDNSNDHRKVDVQRAAR 67
Query: 118 TDKGVSAVGQVVSGRFCIDP--PGLVERL----NSNLPTQIRIFGYKRVTASFNAKKFCD 171
TD GV A G VS + I+P P E L NS LP QIR++G+ R SF+A+ CD
Sbjct: 68 TDAGVHAAGNCVSLKMIINPVLPPEHETLKSLVNSYLPKQIRMWGFVRCIKSFDARTSCD 127
Query: 172 QRRYVYLLPVFA-------------LDSSSHRDRESVMASLGSGNELV 206
R Y YLLP + LDSSS RE LG G E V
Sbjct: 128 SRIYEYLLPSYCLLPPTASSSLAKQLDSSSPGWRE----GLGPGTEFV 171
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 76/126 (60%), Gaps = 6/126 (4%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGA-DSVVNVEGIDFLKCEVVGQSF 403
RF ++ Y+GSHNFHN+T D + +R++I D V E I+++ ++ GQSF
Sbjct: 211 RFRGLMSMYLGSHNFHNYTVGRPFHDRAVKRHMIQIDVLDPKVYGE-IEWISVQIHGQSF 269
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLI-ETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
MLHQIRKMI +AV R P +I ET K I++P AP +GL L+ F +YNK+
Sbjct: 270 MLHQIRKMISMAVLACRTGTPAKIISETYGSK--RIHIPKAPPLGLLLEAPQFKTYNKRI 327
Query: 463 KD-SHE 467
++ SH+
Sbjct: 328 RENSHQ 333
>gi|336368400|gb|EGN96743.1| hypothetical protein SERLA73DRAFT_140490 [Serpula lacrymans var.
lacrymans S7.3]
Length = 521
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 85/145 (58%), Gaps = 3/145 (2%)
Query: 43 PAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSER 102
PA + +++ +K +R+ A+ +CG G GMQ P +TIEG L AL +GAVS+
Sbjct: 69 PADSASNTESKAPRLPKRQTALLIGFCGTGCNGMQIQPDVRTIEGVLFGALVRAGAVSQD 128
Query: 103 DRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG---LVERLNSNLPTQIRIFGYKR 159
+ +P + R+ARTD GV A G +VS + PG +V R+N LP +IR++G+ R
Sbjct: 129 NADDPVKVSLGRAARTDAGVHAAGNLVSMKLITTIPGVNDIVARINEELPPEIRLWGHVR 188
Query: 160 VTASFNAKKFCDQRRYVYLLPVFAL 184
V SFNA+ CD R+Y Y P + L
Sbjct: 189 VQNSFNARMSCDSRKYTYFFPSYLL 213
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
+R + Y G+HNFHNFT + D S +R++ G +++ GQSF
Sbjct: 273 ERLRLTVHKYEGTHNFHNFTVGREFGDRSNQRHMKKIEISEPAVYGGTEWISVLFHGQSF 332
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
MLHQ RKM+ V R P +I+ L + +P P +GL L+ IF SYN+K
Sbjct: 333 MLHQ-RKMMAALVLSCRTDTPDQVIDE-LYGPRTVFIPKMPALGLLLEYPIFESYNRK 388
>gi|342877067|gb|EGU78579.1| hypothetical protein FOXB_10899 [Fusarium oxysporum Fo5176]
Length = 847
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 80/126 (63%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N KTIE DL +A + A+S+ + +P++ R ART
Sbjct: 107 KRKVAVMIGYAGTGYKGMQVNGNEKTIEADLFKAFVAASAISKANADDPKKSSLVRCART 166
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ +V+++N+ LP QIRI+G +R +F+ + CD R Y YL
Sbjct: 167 DKGVHAAGNVISLKLIIEDEDIVDKINAELPEQIRIWGIQRTNNAFSCYQTCDSRWYEYL 226
Query: 179 LPVFAL 184
+P + L
Sbjct: 227 MPSYCL 232
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 78/129 (60%), Gaps = 13/129 (10%)
Query: 345 RFNRI---LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGI-----DFLKC 396
R NR+ L Y G+ NFHN+T + DPSA+R+I SF VVN + I ++L
Sbjct: 386 RLNRLQEALNKYNGTKNFHNYTVQKSFFDPSAKRHIKSF----VVNPKPIIINDTEWLSL 441
Query: 397 EVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFA 456
+V GQSFM+HQIRKM+GLA +VR P I + Q + + +P AP +GL L+ +F
Sbjct: 442 KVHGQSFMMHQIRKMVGLASLIVRCGTPMERINESYQ-NQKMAIPKAPGLGLLLERPVFH 500
Query: 457 SYNKKWKDS 465
+YN+K +S
Sbjct: 501 NYNRKATES 509
>gi|74216027|dbj|BAE23701.1| unnamed protein product [Mus musculus]
Length = 347
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARRYI+ + EG++F +V G
Sbjct: 147 ETLQQVNRLLACYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKG 206
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKM+GL VA+V+ AP+S++E + ++ ++VP AP +GL L+ F YN+
Sbjct: 207 QSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLVLERVHFEKYNQ 265
Query: 461 K 461
+
Sbjct: 266 R 266
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 82/185 (44%), Gaps = 54/185 (29%)
Query: 10 KLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYC 69
K+P P+L+ Q P R + E G D R+L KR KI + AY
Sbjct: 5 KVP-PALASHQ---PDRKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYS 59
Query: 70 GVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVV 129
G GY GMQ GVSA GQVV
Sbjct: 60 GKGYHGMQ-------------------------------------------GVSAAGQVV 76
Query: 130 SGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSS 188
S + + ID +++++NS+LP+ IRI G KRVT FN+K CD R Y Y+LP FA +
Sbjct: 77 SLKVWLID--DILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF---A 131
Query: 189 HRDRE 193
H+DR+
Sbjct: 132 HKDRD 136
>gi|429856152|gb|ELA31077.1| tRNA pseudouridine synthase [Colletotrichum gloeosporioides Nara
gc5]
Length = 473
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 81/126 (64%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N KTIEGDL +A +GA+S+ + + ++ R ART
Sbjct: 99 KRKVAVMVGYSGTGYKGMQINNEEKTIEGDLFKAFVAAGAISKANADDHKKSSLVRCART 158
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + I+ +VE++N+ LP QIR++G +R SF+ + CD R Y YL
Sbjct: 159 DKGVHAAGNVISLKLIIEDEDVVEKINAALPEQIRVWGIQRTNNSFSCYQTCDSRWYEYL 218
Query: 179 LPVFAL 184
+P + L
Sbjct: 219 MPTYCL 224
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 78/126 (61%), Gaps = 5/126 (3%)
Query: 344 KRFNRI---LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKCEVV 399
+R N++ L Y G+ NFHN+T + +DPSA+R+I SF + S + + +++ +V
Sbjct: 313 ERLNQLQAALNEYCGTINFHNYTVQKTFKDPSAKRHIKSFKVNMSPIQIRDTEWVSLKVH 372
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
GQSFM+HQIRKM+G+A VVR P + + I +P AP +GL L+ +F +YN
Sbjct: 373 GQSFMMHQIRKMVGMASLVVRCGTPLERVRQSY-GPTRIAIPKAPGLGLLLERPVFDAYN 431
Query: 460 KKWKDS 465
++ +D+
Sbjct: 432 RRAQDN 437
>gi|170086730|ref|XP_001874588.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649788|gb|EDR14029.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 525
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 92/178 (51%), Gaps = 11/178 (6%)
Query: 18 PRQEPDPKRLKMSATSTSDDERDL--------IPAAAGADSTTKRQLCKRRKIAIFFAYC 69
PR +P+ + K S R L + A G + K +R+ A+ +C
Sbjct: 48 PRPKPERTKDKESKKDGRHRRRQLPNEEDANKVDEATGQEEGPKPPRYPKRQCALLVGFC 107
Query: 70 GVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVV 129
G GY GMQ +TIEG L AL GAVS+ + +P + AR+ARTD GV A G +V
Sbjct: 108 GSGYSGMQMYGHTRTIEGALFGALVKVGAVSQDNADDPVKVALARAARTDAGVHAAGNLV 167
Query: 130 SGRFCIDPPG---LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
S + I PG LV R+N LP +IR++GY R SFNA+ CD R+Y Y P + +
Sbjct: 168 SLKMIITVPGIKDLVARINEELPPEIRLWGYVRTQNSFNARLVCDSRKYTYFFPTYLM 225
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 6/129 (4%)
Query: 337 CY--GEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFL 394
C+ G+E+ ++ + K Y G+HNFHNFT + ++ S R++ V +++
Sbjct: 265 CWRTGQEQVQKLRELAKGYEGTHNFHNFTVGREFKERSNHRFMKQIEVSDPVVYGDTEWI 324
Query: 395 KCEVVGQSFMLHQIRK-MIGLAVAVVRN-CAPQSLIETALQKDVNINVPTAPEVGLYLDE 452
GQSFMLHQ+R+ M+ + V R +PQ + E L N+ VP P +GL L+
Sbjct: 325 SVMFHGQSFMLHQVRRLMMSMLVMTCRTETSPQIIDE--LYGPRNVFVPKMPSLGLLLEH 382
Query: 453 CIFASYNKK 461
+F SYN +
Sbjct: 383 PLFHSYNGR 391
>gi|367029149|ref|XP_003663858.1| hypothetical protein MYCTH_2306070 [Myceliophthora thermophila ATCC
42464]
gi|347011128|gb|AEO58613.1| hypothetical protein MYCTH_2306070 [Myceliophthora thermophila ATCC
42464]
Length = 627
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 82/126 (65%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY G+Q N KTIEGD+ A +GA+S+ + +P++ R ART
Sbjct: 108 KRKVAVMIGYAGTGYHGIQINHKDKTIEGDIFAAFVAAGAISKANADDPKKSSLVRCART 167
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G V+S + ++ +V+++N++LP QIR++G +R + F+ + CD R Y YL
Sbjct: 168 DKGVHAAGNVLSLKLIVEDEDIVDKINAHLPDQIRVWGIQRTSNGFSCYQACDSRWYEYL 227
Query: 179 LPVFAL 184
+P ++L
Sbjct: 228 MPSYSL 233
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVGQS 402
+R + L Y+G+ NFHN+T +DPSA+R+I SF + + + ++L +V GQS
Sbjct: 414 QRLQQALDLYLGTRNFHNYTIMKSFKDPSAKRHIKSFQVNPTPITIRDTEWLSLKVHGQS 473
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FM+HQIRKM+ +AV VVR AP S+I T I++P AP +GL L+ +F YNKK
Sbjct: 474 FMMHQIRKMVAMAVMVVRCGAPLSII-TESYGPRRISIPKAPGLGLMLERPMFTEYNKK 531
>gi|403356760|gb|EJY77983.1| tRNA pseudouridine synthase putative [Oxytricha trifallax]
Length = 497
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 123/478 (25%), Positives = 199/478 (41%), Gaps = 60/478 (12%)
Query: 4 AETNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRK-- 61
AE + E L ++P+Q + + +++ E++ ++ K+Q K K
Sbjct: 5 AEQDVEALEQ-QVNPKQTEQINQQQEEVKNSNQTEQNTNQTDKKDENIDKKQESKLPKCR 63
Query: 62 IAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKG 121
+A+ Y G + G QKNP +++E ++E+AL+ G +SE + G+ ++ W R+ RTDK
Sbjct: 64 VAMIVGYNGSNFCGSQKNPNIRSVEEEIEKALYRLGRISEYNYGDLKKIGWNRATRTDKR 123
Query: 122 VSAVGQVVSGRFCI-----DPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
V A+ S + I + LN LP I IF R + FN+K D R Y
Sbjct: 124 VHAIQNCFSFKIHISKDENEDEDFRVVLNKELPEDITIFAIIRSSNRFNSKLNADDREYS 183
Query: 177 YLLPVFALDSSSHRDRESVMASLGSG-NELVKCLECSERGRKVIGVMGKRTYQLGLPSND 235
Y LP F L S GSG N ++ + RG K GV+ + +
Sbjct: 184 YYLPTFMLKSIKQ-------GWYGSGINRKIQAAQL--RGNKAEGVVA--------GTEE 226
Query: 236 ENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTS 295
E + + + N ++ L++ + E N + L R
Sbjct: 227 EKKEDDKPKGIKFIRRDPNKKKNEDGLDNDDDE---------EGNNDVEQYQDLYLFRNI 277
Query: 296 ETVQNENTDL--SLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEK-KRFNRILKH 352
+ + DL S L ++ +V+A + G +K + K +RF IL+
Sbjct: 278 DHIPQSEFDLLYSYRLSKEDHERVIALFKLFLGVKKYHNYTKLIRAHMMKAQRFMMILE- 336
Query: 353 YVGSHNFHNFTTR--TKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
+ N+ T T EDP A I+FL + GQSF+ +QIRK
Sbjct: 337 -ASDFMYVNYETNEVTNKEDPKA-----------------IEFLHFALKGQSFLYNQIRK 378
Query: 411 MIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
MIG+ + V R I L+ ++ +NV AP GL L++ + YN KD E
Sbjct: 379 MIGVIIQVFRGDLDDKFIPNTLRDNI-VNVALAPGDGLLLEKVCYDKYNTNKKDVKNE 435
>gi|167524395|ref|XP_001746533.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774803|gb|EDQ88429.1| predicted protein [Monosiga brevicollis MX1]
Length = 415
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFML 405
F LK Y+G+H FHNFT A D S RRYI F EGI++++ +V GQSF+L
Sbjct: 175 FRETLKRYIGTHKFHNFTAGKSASDDSCRRYITDFTVSEPFEREGIEWVRIQVKGQSFIL 234
Query: 406 HQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDS 465
HQIRKMIGLAVA+VR ++ D ++VP P +GL+LD F YNK++ +
Sbjct: 235 HQIRKMIGLAVAIVRGHVKDDYMDRCFS-DERVDVPKIPGLGLFLDCVFFDYYNKQYSNQ 293
Query: 466 HE 467
H+
Sbjct: 294 HQ 295
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
+K A+ + G Y GMQ+N G +TIE L AL +G + + + P+ + R ARTD
Sbjct: 31 KKYALLMGFQGTSYAGMQRNIGFETIESTLLRALLVTGCIDKNNYETPQSMHFQRCARTD 90
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
KGV A QVV+ R + V+ LN+ LP IRIFG R T FN K C RRY YLL
Sbjct: 91 KGVHAARQVVAMRMILT-ENTVDELNAKLPDDIRIFGAFRTTKGFNPKNACTGRRYEYLL 149
Query: 180 PVFAL 184
P +AL
Sbjct: 150 PTYAL 154
>gi|7670391|dbj|BAA95047.1| unnamed protein product [Mus musculus]
Length = 257
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 96/170 (56%), Gaps = 28/170 (16%)
Query: 46 AGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSER 102
G D R+L KR KI + AY G GY GMQ+N G+ +TIE DL AL +G + E
Sbjct: 67 GGEDEEPPRKLPKR-KIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPEN 125
Query: 103 DRGNPRRYDWARSARTDK------------------GVSAVGQVVSGR-FCIDPPGLVER 143
+ R+ + R ARTDK GVSA GQVVS + + ID ++++
Sbjct: 126 HGTDMRKMSFQRCARTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSLKVWLID--DILDK 183
Query: 144 LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 193
+NS+LP+ IRI G KRVT FN+K CD R Y Y+LP FA +H+DR+
Sbjct: 184 INSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF---AHKDRD 230
>gi|312385729|gb|EFR30155.1| hypothetical protein AND_00413 [Anopheles darlingi]
Length = 443
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 79/136 (58%), Gaps = 4/136 (2%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
KRRK I Y GV Y GMQ+NPG +TIE DL A+ +++ P++ + R+A
Sbjct: 101 VKRRKSVILLGYSGVDYFGMQRNPGTRTIEEDLLRAMLKQEWINDEGFRQPQQIQFQRAA 160
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
RTDKGVSA QVVS + P L V LN LP QIR++ KRVT FN+K CD R Y
Sbjct: 161 RTDKGVSAAVQVVSIKL---PDNLDVAALNGELPPQIRVYAVKRVTKGFNSKTNCDARTY 217
Query: 176 VYLLPVFALDSSSHRD 191
Y LP A ++ +D
Sbjct: 218 TYTLPTIAFAANDEKD 233
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 75/121 (61%), Gaps = 3/121 (2%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCEVVGQ 401
+R N +L Y+G+ NFHNFT+R + DPS +RYI+ F G V + +F + GQ
Sbjct: 247 QRVNEVLALYLGTKNFHNFTSRKEFIDPSVKRYIMEFECGTPFVPDGTTAEFATIRIKGQ 306
Query: 402 SFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
SFMLHQIRKM+GL +AVVR + +IE A ++ +PTAP +GL L + YNK+
Sbjct: 307 SFMLHQIRKMVGLTLAVVRGLSQADIIEKAFGQE-RYGIPTAPGLGLVLSRIHYDKYNKR 365
Query: 462 W 462
+
Sbjct: 366 Y 366
>gi|409081331|gb|EKM81690.1| hypothetical protein AGABI1DRAFT_118781 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 550
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 89/157 (56%), Gaps = 9/157 (5%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+R+ A+ +CG GY GMQ P KTIEG L +AL +GAVS+ + +P + AR+AR
Sbjct: 103 KRQCALLIGFCGSGYNGMQMYPPPLKTIEGTLFKALVEAGAVSQDNANDPVKVALARAAR 162
Query: 118 TDKGVSAVGQVVSGRFCIDPPG---LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
TD GV A G +VS + + PG LV R+N LP +IR++GY R SFNA+ CD R+
Sbjct: 163 TDAGVHAAGNIVSLKMIMHVPGIPDLVGRVNELLPPEIRLWGYVRAQNSFNARLACDSRK 222
Query: 175 YVYLLPVFAL-----DSSSHRDRESVMASLGSGNELV 206
Y Y P + L S+ HR SLG ++
Sbjct: 223 YTYYFPSYLLIPPKPGSNLHRVLAQHAESLGHNGSIL 259
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 353 YVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMI 412
++G+HNFHNFT A D S R++ S V +++ GQSFMLHQ+RKM+
Sbjct: 298 FIGTHNFHNFTVGRDASDKSNMRHMKSIEIADPVTHGDTEWVSVLFHGQSFMLHQVRKMM 357
Query: 413 GLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
V R N +P I T L K+ + +P P +GL L+E IFASYN +
Sbjct: 358 SSLVLSCRTNTSPN--IVTELYKNPDAFIPKMPSLGLLLEEPIFASYNSR 405
>gi|444314537|ref|XP_004177926.1| hypothetical protein TBLA_0A06150 [Tetrapisispora blattae CBS 6284]
gi|387510965|emb|CCH58407.1| hypothetical protein TBLA_0A06150 [Tetrapisispora blattae CBS 6284]
Length = 496
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 83/132 (62%)
Query: 53 KRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDW 112
K + +RK+A+ YCG GY G+Q NP TIE L +A SGA+S+ + + ++ +
Sbjct: 75 KEKRLPKRKVAVMIGYCGAGYCGLQYNPPNPTIESTLFKAFCDSGAISKANSTDLKKNGF 134
Query: 113 ARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
AR+ARTDKGV A G ++S + I+ P + +++N LP IR++ KRV +F+ +K C
Sbjct: 135 ARTARTDKGVHAGGNLISLKMIIEDPDIKQKINDALPEGIRVWDIKRVNKAFDCRKMCGS 194
Query: 173 RRYVYLLPVFAL 184
R Y YLLP ++L
Sbjct: 195 RWYEYLLPTYSL 206
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 3/124 (2%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCE 397
+E+ ++F ++K Y+G+HNFHNFT + +DPSA R++ I+ V+ +++ +
Sbjct: 298 KEKLEKFRVVMKQYLGAHNFHNFTLGKEYKDPSAIRFMKDITISDPFVIGAAETEWISIK 357
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFAS 457
+ GQSFMLHQIRKMI +A V R P I A +N+P AP +GL L+ +F
Sbjct: 358 IHGQSFMLHQIRKMISMATLVTRCGCPADRITEAYGTQ-RLNIPKAPALGLLLEAPVFEG 416
Query: 458 YNKK 461
YNK+
Sbjct: 417 YNKR 420
>gi|443709138|gb|ELU03937.1| hypothetical protein CAPTEDRAFT_83969, partial [Capitella teleta]
Length = 303
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
Query: 343 KKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQS 402
+++ N IL +VG+HNFHN+T+ K DPSA RYIISF V+GI+F + GQS
Sbjct: 133 QRQVNIILSSFVGTHNFHNYTSGKKPTDPSAHRYIISFKMGDAFIVDGIEFAVITIRGQS 192
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
FMLHQIRKMIG+ +A++R + +S++ A +D ++P AP +GL LD+ + YNK +
Sbjct: 193 FMLHQIRKMIGVTIAIMRGYSSKSVLIDAWGQD-KCDIPRAPGLGLMLDKVHYDDYNKYY 251
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 80/128 (62%), Gaps = 7/128 (5%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNP-RRYDWARSA 116
+++K+A+F Y G GY GMQ+NPG TIE DL +AL +G V++ +P + + R+A
Sbjct: 4 RKKKVAMFMCYSGKGYFGMQRNPGYATIERDLIDALAKAGVVTQDQAESPGPKMQFQRAA 63
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
RTDKGVSA GQV S + V ++N +LP QIRI G VT F++K C+ R Y
Sbjct: 64 RTDKGVSAAGQVCSLKIS------VFKINEHLPEQIRILGIIPVTKGFDSKNSCNGRTYT 117
Query: 177 YLLPVFAL 184
Y++P +A
Sbjct: 118 YMVPTYAF 125
>gi|401837445|gb|EJT41373.1| PUS1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 552
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 79/126 (62%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ YCG GY GMQ NP TIE L +A +GA+S + + ++ + R+ART
Sbjct: 82 KRKVAVMVGYCGTGYHGMQYNPPNPTIESTLFKAFVEAGAISRDNSNDLKKNGFMRAART 141
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + I+ P + E++N LP IR++ +RV +F+ +K C R Y YL
Sbjct: 142 DKGVHAGGNLISLKMIIEDPDIKEKINDKLPQGIRVWDIERVNKAFDCRKMCSSRWYEYL 201
Query: 179 LPVFAL 184
LP ++L
Sbjct: 202 LPTYSL 207
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
+F K Y+G+HNFHNFT ++PSA R++ I+ V+ +++ ++ GQS
Sbjct: 304 KFRASTKQYLGAHNFHNFTLGKDFKEPSAIRFMKEINVSDPFVIGEAQTEWVSVKIHGQS 363
Query: 403 FMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FMLHQIRKMI +A + R C Q + + Q+ INVP AP +GL L+ +F YNK+
Sbjct: 364 FMLHQIRKMISMATLITRCGCPVQRITQAYGQQ--KINVPKAPALGLLLEAPVFEGYNKR 421
>gi|348513719|ref|XP_003444389.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Oreochromis niloticus]
Length = 421
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 80/130 (61%), Gaps = 6/130 (4%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPG---AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
++K+ + Y G GY GMQ+NPG +TIE DL AL SG + E ++ + R
Sbjct: 79 KKKVVLLMVYSGKGYYGMQRNPGNSQFRTIEDDLVAALIKSGCIPENHGDEMKKMSFQRC 138
Query: 116 ARTDKGVSAVGQVVSGRF-CIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
ARTDKGVSA GQVVS + ID ++E++N +LP QI++ G KRVT FN+K CD R
Sbjct: 139 ARTDKGVSAAGQVVSLKVRLID--DIIEKINEHLPPQIKVLGLKRVTQGFNSKNNCDART 196
Query: 175 YVYLLPVFAL 184
Y Y+LP A
Sbjct: 197 YSYMLPTVAF 206
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 1/129 (0%)
Query: 334 SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDF 393
+ F E ++ NR+ Y G+HNFHNFT++ DPSARRYI +F
Sbjct: 217 AAFRLEPETLQKVNRLFALYKGTHNFHNFTSQKAPSDPSARRYITEMSCGEPFIRRNYEF 276
Query: 394 LKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDEC 453
V GQSFMLHQIRKMIGL +AVV+ A + ++E + ++ ++VP AP +GL L+
Sbjct: 277 AVITVRGQSFMLHQIRKMIGLVIAVVKGYAKEEVMERSWGQE-KVDVPKAPGLGLILERV 335
Query: 454 IFASYNKKW 462
F YNK++
Sbjct: 336 HFDRYNKRF 344
>gi|365758114|gb|EHM99973.1| Pus1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 552
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 79/126 (62%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ YCG GY GMQ NP TIE L +A +GA+S + + ++ + R+ART
Sbjct: 82 KRKVAVMVGYCGTGYHGMQYNPPNPTIESTLFKAFVEAGAISRDNSNDLKKNGFMRAART 141
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + I+ P + E++N LP IR++ +RV +F+ +K C R Y YL
Sbjct: 142 DKGVHAGGNLISLKMIIEDPDIKEKINDKLPQGIRVWDIERVNKAFDCRKMCSSRWYEYL 201
Query: 179 LPVFAL 184
LP ++L
Sbjct: 202 LPTYSL 207
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
+F + Y+G+HNFHNFT ++PSA R++ I+ V+ +++ ++ GQS
Sbjct: 304 KFRASTEQYLGAHNFHNFTLGRDFKEPSAIRFMKEINVSDPFVIGEAQTEWVSVKIHGQS 363
Query: 403 FMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FMLHQIRKMI +A + R C Q + + Q+ INVP AP +GL L+ +F YNK+
Sbjct: 364 FMLHQIRKMISMATLITRCGCPVQRITQAYGQQ--KINVPKAPALGLLLEAPVFEGYNKR 421
>gi|410083876|ref|XP_003959515.1| hypothetical protein KAFR_0K00250 [Kazachstania africana CBS 2517]
gi|372466107|emb|CCF60380.1| hypothetical protein KAFR_0K00250 [Kazachstania africana CBS 2517]
Length = 546
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 79/126 (62%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ + + ++ + RSART
Sbjct: 72 KRKVAVMVGYCGTGYHGMQYNPPNPTIEAALFKAFVDAGAISKDNSNDLKKNGFMRSART 131
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + I+ P + +++N LP IR++ RV +F+ +K C R Y YL
Sbjct: 132 DKGVHAGGNLISLKMIIEDPEIKQKINEKLPEGIRVWDINRVNKAFDCRKMCSSRWYEYL 191
Query: 179 LPVFAL 184
LP ++L
Sbjct: 192 LPTYSL 197
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
+F + +K Y+ +HNFHNFT + +DPSA R++ I V+ +++ ++ GQS
Sbjct: 294 KFRKAMKQYLNAHNFHNFTLGKEFKDPSAIRFMKQIKVSEPFVIGEAKTEWVSIKIHGQS 353
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
FMLHQIRKMI +A + R P I + IN+P AP +GL L+ +F YN
Sbjct: 354 FMLHQIRKMISMATLITRCGTPVERITQSFGPQ-KINIPKAPALGLLLESPVFEGYN 409
>gi|380016702|ref|XP_003692314.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Apis
florea]
Length = 391
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 86/153 (56%), Gaps = 6/153 (3%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFH 95
D+ +++ A D K KR+K I Y G Y GMQ N G KTIEG L AL
Sbjct: 24 DESSEIVAKAPKLDIIQKENNVKRKKFVIVLGYLGKNYSGMQINRGTKTIEGSLLSALLK 83
Query: 96 SGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLV--ERLNSNLPTQIR 153
+ +++ + + + R+ARTDKGVSAV Q+VS + P V E +N +LP IR
Sbjct: 84 ADFITKDQFEDLKEIKFQRAARTDKGVSAVRQIVS----LQLPNHVNKEDINKHLPKDIR 139
Query: 154 IFGYKRVTASFNAKKFCDQRRYVYLLPVFALDS 186
+F KRVT +FN+K CD R Y Y+LP FAL S
Sbjct: 140 VFDIKRVTRNFNSKNKCDARTYRYVLPTFALAS 172
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
+ N ILK + G+HNFHNFT++ + DP A+RYI+ F ++F EV GQSFM
Sbjct: 215 KLNEILKLFEGTHNFHNFTSKIRPMDPRAKRYIVYFRCIETFIANNMEFAILEVQGQSFM 274
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW-K 463
LHQIRKMI L + + RN ++ A + I++P AP +GL L + YN+++ K
Sbjct: 275 LHQIRKMISLIIGICRNIITIDFVKDAFSLE-KIDIPIAPGLGLSLHFVHYTYYNERFGK 333
Query: 464 DSHEE 468
D E
Sbjct: 334 DGFHE 338
>gi|302686228|ref|XP_003032794.1| hypothetical protein SCHCODRAFT_82025 [Schizophyllum commune H4-8]
gi|300106488|gb|EFI97891.1| hypothetical protein SCHCODRAFT_82025 [Schizophyllum commune H4-8]
Length = 561
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 78/130 (60%), Gaps = 4/130 (3%)
Query: 59 RRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+R A+ +CG GY GMQ + P AKTIE +L +A GAVS + +P + R+AR
Sbjct: 129 KRMCAVLIGFCGSGYNGMQIQKPPAKTIENELFDAFVRVGAVSRDNSDDPVKVGLKRAAR 188
Query: 118 TDKGVSAVGQVVSGRFCIDPPG---LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
TD GV A G +VS + PG LV R+N LP QIR++G+ RVT SF A++ CD R+
Sbjct: 189 TDAGVHAAGNLVSLKLITAIPGVPDLVARVNEELPPQIRMWGFTRVTNSFEARQMCDSRK 248
Query: 175 YVYLLPVFAL 184
Y Y P + L
Sbjct: 249 YTYFFPSYML 258
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFG-ADSVVNVEGIDFLKCEVVGQSFM 404
R + + G+HNFHNFT +D S RY+ AD VV + +++ + GQSFM
Sbjct: 316 LRRTAEKFEGTHNFHNFTVGRTFQDRSCMRYMKKIEIADPVVYGD-TEWIAVTLHGQSFM 374
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWK 463
LHQIRKM+ V VRN P S+++ + +P P +GL L+ IF SYN+K K
Sbjct: 375 LHQIRKMMSALVLSVRNDTPASVMDELYGARTSF-IPKMPSLGLLLEHPIFDSYNRKAK 432
>gi|326929552|ref|XP_003210926.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Meleagris gallopavo]
Length = 596
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ N +L Y G+HNFHNFT++ +DPSARRYI+ E I+F +V G
Sbjct: 265 ETLEKVNSLLACYKGTHNFHNFTSQKGPKDPSARRYIMEMYCGEPFVRENIEFAVIKVKG 324
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM+HQIRKMIGL +A+V+ AP+S+IE + ++ ++VP AP +GL L+ F YN+
Sbjct: 325 QSFMMHQIRKMIGLVIAIVKGYAPESVIERSWGEE-KVDVPKAPGLGLVLERVHFEKYNR 383
Query: 461 KW 462
++
Sbjct: 384 RF 385
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 82/142 (57%), Gaps = 10/142 (7%)
Query: 77 QKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRF 133
Q+N G+ KTIE DL AL SG + E + ++ + R ARTDKGVSA GQ+VS +
Sbjct: 139 QRNLGSSQFKTIEDDLVSALVQSGCIPENHGEDMKKMSFQRCARTDKGVSAAGQIVSLKV 198
Query: 134 -CIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDR 192
ID ++E++N++LP+ IRI G KRVT FN+K CD R Y Y+LP FA H +
Sbjct: 199 RLID--DILEKINNHLPSHIRILGLKRVTGGFNSKNKCDARTYAYMLPTFAFAHKDHDVQ 256
Query: 193 ESVM----ASLGSGNELVKCLE 210
E +L N L+ C +
Sbjct: 257 EEAYRLSRETLEKVNSLLACYK 278
>gi|340056882|emb|CCC51221.1| putative pseudouridylate synthase I, fragment [Trypanosoma vivax
Y486]
Length = 512
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 126/452 (27%), Positives = 188/452 (41%), Gaps = 55/452 (12%)
Query: 49 DSTTKRQLCKR--RKIAIFFAYCGVGYQGMQKN--PGAKTIEGDLEEALFHSGAVSERDR 104
D+ QL KR RK+AI F Y G Y G+Q N P T+E +L A+ + +SE +
Sbjct: 9 DAAKDNQLEKRPKRKVAIVFGYVGERYCGLQWNHLPDHPTVEEELLRAMRKTNMISEENY 68
Query: 105 GNPR---RYDWARSARTDKGVSAVGQVVS-------GRFCIDPPGLVER---LNSNLPTQ 151
+ + +W R++RTDKGV A+ VVS + D L E LN LP
Sbjct: 69 AQDKVQQKLNWERTSRTDKGVHALRNVVSLNAMLPYSKNSADEFDLEEAKRLLNDVLPPD 128
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSS-SHRDR--------------ESVM 196
I I+ VT SFNA C R Y Y LP FA S +R++ E+
Sbjct: 129 IVIYEVVPVTRSFNAYMLCGGRTYEYYLPTFAFMSPEEYREKYFPPAIAPSHPTLEEAGH 188
Query: 197 ASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQV---KVDTVVSTC 253
A S + +E ++ G G+R Q +ND ++ + V C
Sbjct: 189 AYEKSAGQFTPVVEHTDDG------PGERKRQRENDTNDYRQGAQDELGARATSSAVEPC 242
Query: 254 NGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKN 313
+ +R N S + + N S S T V TV + L L L +
Sbjct: 243 SSERGNKG-----SGNAVGDPGGRGNDPSSSRYITSVTVSEPFTVHPTDPQLELALKTWT 297
Query: 314 DSKVMAEERSVNGEEKLLKGSGFCYG--EEEKKRFNRILKH-YVGSHNFHNFTTRTKAED 370
+ + + E+L+ C EE+++R + H Y G+ + +ED
Sbjct: 298 PQRYYSPD-----GEQLVNEREACDSSIEEQRQRVRSHMLHVYGGTDGEEGVNSNCSSED 352
Query: 371 PSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAV-VRNCAPQSLIE 429
S + + G++ ++ E+ GQSFM +QIRKMIG A+ V P+ L +
Sbjct: 353 CSNCSGVSGLTPATGHVCGGLEVVRIELCGQSFMFNQIRKMIGTVAAMCVAGLPPEYLRQ 412
Query: 430 TALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
L K + P AP GL+L F YN +
Sbjct: 413 HFLNKAIRCGTPMAPANGLFLTYLDFQRYNYR 444
>gi|323335274|gb|EGA76563.1| Pus1p [Saccharomyces cerevisiae Vin13]
Length = 545
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ + + ++ + R+ART
Sbjct: 75 KRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAART 134
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + I+ P + +++N LP IR++ +RV +F+ +K C R Y YL
Sbjct: 135 DKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWYEYL 194
Query: 179 LPVFAL 184
LP ++L
Sbjct: 195 LPTYSL 200
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
+F Y+G+HNFHNFT ++PSA R++ I V+ +++ ++ GQS
Sbjct: 297 KFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHGQS 356
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FMLHQIRKM+ +A + R P I A + IN+P AP +GL L+ +F YNK+
Sbjct: 357 FMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEAPVFEGYNKR 414
>gi|330793042|ref|XP_003284595.1| hypothetical protein DICPUDRAFT_45589 [Dictyostelium purpureum]
gi|325085509|gb|EGC38915.1| hypothetical protein DICPUDRAFT_45589 [Dictyostelium purpureum]
Length = 473
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 95/176 (53%), Gaps = 17/176 (9%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+++K+A+ Y G Y GMQKNPG +TIE +LE A+F +G + + + DW R AR
Sbjct: 66 RKKKVAVLLGYLGKNYAGMQKNPGLRTIEEELEMAIFKAGGILPDNLYFQHKIDWVRCAR 125
Query: 118 TDKGVSAVGQVVSGRFCIDPPGL---VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
TDKGVSA+ VVS + + PP L V+ LN LP I +F RV SF+AK D R
Sbjct: 126 TDKGVSALRNVVSLKMEVGPPELDEMVKALNKLLPEDIHVFKIMRVNNSFHAKNGVDARS 185
Query: 175 YVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLG 230
YVY+ P A + + N+LV+ + +E R+ + + +Y LG
Sbjct: 186 YVYVCPTSAFEPKF------------ATNKLVEPFKFTEETRETLNRV--LSYYLG 227
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 82/146 (56%), Gaps = 14/146 (9%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLK 395
F + EE ++ NR+L +Y+G+H FHN+T+R ++ D S R II F +EG++ +
Sbjct: 208 FKFTEETRETLNRVLSYYLGNHRFHNYTSRKESNDVSVFRKIIKFECSVPFILEGVEMVS 267
Query: 396 CEVVGQSFMLHQIRKMIGLAVAVVRNCAPQ-------------SLIETALQKDVNINVPT 442
V+G+SFMLHQIRKMIG ++ +R Q IE +N+P
Sbjct: 268 INVIGESFMLHQIRKMIGCLMSFMRKGIFQDAQDKESAFDQIRKYIEATFYHQ-PLNLPV 326
Query: 443 APEVGLYLDECIFASYNKKWKDSHEE 468
AP GL LD CIF +N+K+KD H E
Sbjct: 327 APGAGLLLDHCIFRMWNEKYKDIHGE 352
>gi|118782859|ref|XP_312543.3| AGAP002409-PA [Anopheles gambiae str. PEST]
gi|116129767|gb|EAA08062.3| AGAP002409-PA [Anopheles gambiae str. PEST]
Length = 451
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEG--IDFLKCEVVGQS 402
R N +L YVG+ NFHNFT+R + DPS +R+I+SF D EG +F ++ GQS
Sbjct: 254 RVNEVLALYVGTKNFHNFTSRKEFLDPSVKRFIMSFECDPPFLPEGSTAEFATIKIKGQS 313
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
FMLHQIRKM+GL +AVVR A +IE A +D +PTAP +GL L + YNK++
Sbjct: 314 FMLHQIRKMVGLTIAVVRGLAESDIIEKAFGQD-RYGIPTAPGLGLVLSRIHYDKYNKRY 372
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
KRRK I Y GV Y GMQ+NPG KTIE DL A+ +++ P++ + R+A
Sbjct: 108 VKRRKSIILLGYSGVNYFGMQRNPGTKTIEEDLLRAMQKREWINDEGFRQPQQIQFQRAA 167
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
RTDKGVSA QVVS + P L +E LNS LP IR++ KRVT FN+K CD R Y
Sbjct: 168 RTDKGVSAAMQVVSIKL---PDNLDIEALNSELPEDIRVYAVKRVTKGFNSKTNCDARTY 224
Query: 176 VYLLPVFAL 184
Y LP A
Sbjct: 225 TYTLPTIAF 233
>gi|365762707|gb|EHN04240.1| Pus1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 544
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ + + ++ + R+ART
Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAART 133
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + I+ P + +++N LP IR++ +RV +F+ +K C R Y YL
Sbjct: 134 DKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWYEYL 193
Query: 179 LPVFAL 184
LP ++L
Sbjct: 194 LPTYSL 199
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
+F Y+G+HNFHNFT ++PSA R++ I V+ +++ ++ GQS
Sbjct: 296 KFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHGQS 355
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FMLHQIRKM+ +A + R P I A + IN+P AP +GL L+ +F YNK+
Sbjct: 356 FMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEAPVFEGYNKR 413
>gi|299469782|emb|CBN76636.1| tRNA Pseudouridine Synthase [Ectocarpus siliculosus]
Length = 677
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ +Y G YQG+Q N GA+TIE +LE AL+ +G +S+ + GNPR+ W+R+ RT
Sbjct: 190 KKKVALLISYWGNNYQGLQINKGARTIEAELELALYLAGTISKDNFGNPRKVSWSRAGRT 249
Query: 119 DKGVSAVGQVVSGRFCIDPPG---LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
DKGV A QV+S + G VE++N LP IR +R SF+++ C RRY
Sbjct: 250 DKGVHAAAQVISVKLTYLNDGERETVEKINKYLPDDIRAVDIRRAPKSFDSRTRCSGRRY 309
Query: 176 VYLLPVFAL 184
Y++P + L
Sbjct: 310 EYIMPTYVL 318
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIR 409
LK ++G+ N+HN+T KA D S +R I SF A EG+++++ V GQSF++HQIR
Sbjct: 509 LKGFLGTKNYHNYTNHKKATDASCKRLITSFTASDPFEHEGMEWIRLTVGGQSFIMHQIR 568
Query: 410 KMIGLAVAVVRNCA-PQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
KM+ V VR + P+ ++ L + +N+ + AP GLYL+ ++ YNK
Sbjct: 569 KMVASTVDRVRGQSNPEDFTKSFLPEKINLGI--APSDGLYLERPLYEPYNK 618
>gi|323346109|gb|EGA80399.1| Pus1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323351939|gb|EGA84478.1| Pus1p [Saccharomyces cerevisiae VL3]
Length = 508
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ + + ++ + R+ART
Sbjct: 38 KRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAART 97
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + I+ P + +++N LP IR++ +RV +F+ +K C R Y YL
Sbjct: 98 DKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWYEYL 157
Query: 179 LPVFAL 184
LP ++L
Sbjct: 158 LPTYSL 163
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
+F Y+G+HNFHNFT ++PSA R++ I V+ +++ ++ GQS
Sbjct: 260 KFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHGQS 319
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FMLHQIRKM+ +A + R P I A + IN+P AP +GL L+ +F YNK+
Sbjct: 320 FMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEAPVFEGYNKR 377
>gi|6325044|ref|NP_015112.1| pseudouridine synthase PUS1 [Saccharomyces cerevisiae S288c]
gi|3122655|sp|Q12211.1|PUS1_YEAST RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|1370440|emb|CAA97927.1| PUS1 [Saccharomyces cerevisiae]
gi|1403091|emb|CAA56698.1| pseudouridine synthase 1 [Saccharomyces cerevisiae]
gi|151942589|gb|EDN60935.1| tRNA-pseudouridine synthase [Saccharomyces cerevisiae YJM789]
gi|190407751|gb|EDV11016.1| tRNA pseudouridine synthase [Saccharomyces cerevisiae RM11-1a]
gi|259149945|emb|CAY86748.1| Pus1p [Saccharomyces cerevisiae EC1118]
gi|285815332|tpg|DAA11224.1| TPA: pseudouridine synthase PUS1 [Saccharomyces cerevisiae S288c]
gi|392296223|gb|EIW07326.1| Pus1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 544
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ + + ++ + R+ART
Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAART 133
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + I+ P + +++N LP IR++ +RV +F+ +K C R Y YL
Sbjct: 134 DKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWYEYL 193
Query: 179 LPVFAL 184
LP ++L
Sbjct: 194 LPTYSL 199
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
+F Y+G+HNFHNFT ++PSA R++ I V+ +++ ++ GQS
Sbjct: 296 KFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHGQS 355
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FMLHQIRKM+ +A + R P I A + IN+P AP +GL L+ +F YNK+
Sbjct: 356 FMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEAPVFEGYNKR 413
>gi|256272816|gb|EEU07786.1| Pus1p [Saccharomyces cerevisiae JAY291]
Length = 544
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ + + ++ + R+ART
Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAART 133
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + I+ P + +++N LP IR++ +RV +F+ +K C R Y YL
Sbjct: 134 DKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWYEYL 193
Query: 179 LPVFAL 184
LP ++L
Sbjct: 194 LPTYSL 199
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
+F Y+G+HNFHNFT ++PSA R++ I V+ +++ ++ GQS
Sbjct: 296 KFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHGQS 355
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FMLHQIRKM+ +A + R P I A + IN+P AP +GL L+ +F YNK+
Sbjct: 356 FMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEAPVFEGYNKR 413
>gi|452985072|gb|EME84829.1| hypothetical protein MYCFIDRAFT_135121 [Pseudocercospora fijiensis
CIRAD86]
Length = 592
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 80/126 (63%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ + KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 130 KRKVAVLIGYSGTGYKGMQISGTEKTIEGDLFHAFIKAGAISKANAEDPKKTGLVRCART 189
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G +VS + ++ +V+++N+ L QIR++G +R SF+ + CD R Y YL
Sbjct: 190 DKGVHAAGNMVSLKLIVEDDDIVQKINAELSAQIRVWGIERTIGSFSCYQACDSRWYEYL 249
Query: 179 LPVFAL 184
+P +A
Sbjct: 250 IPSYAF 255
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 8/130 (6%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNV-------EGIDFLKCE 397
R L Y+G+ N+HN+T + +DPS +R+I SF A+ + E ++L +
Sbjct: 388 RIQNALNKYLGTKNYHNYTIQKTFKDPSVKRHIKSFLANPKPILIGDGPEEEKTEWLSLK 447
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFAS 457
V GQSFM+HQIRKM+G+ +VR+ +E++ ++P P +GL L+ +F S
Sbjct: 448 VHGQSFMMHQIRKMVGMVTLLVRSGGNLETMESSFTA-ARYSIPKVPGLGLLLERPVFDS 506
Query: 458 YNKKWKDSHE 467
YN + H+
Sbjct: 507 YNNFQAEKHD 516
>gi|389745603|gb|EIM86784.1| pseudouridine synthase [Stereum hirsutum FP-91666 SS1]
Length = 613
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+R+ A+ +CG G GMQ P +TIEG L +AL +GAVS+ + +P + + R+ART
Sbjct: 165 KRQCALLIGFCGTGCNGMQIQPNVRTIEGVLFDALVRAGAVSKDNADDPVKVNLGRAART 224
Query: 119 DKGVSAVGQVVSGRFCIDPPG---LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
D GV A G VVS + PG +V ++N LP +IR++GY RV SFNA+ CD R+Y
Sbjct: 225 DAGVHAAGNVVSIKIITQIPGVPDVVAKVNELLPPEIRLWGYVRVQNSFNARLSCDSRKY 284
Query: 176 VYLLPVFAL 184
Y P + L
Sbjct: 285 TYFFPSYLL 293
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 327 EEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFG-ADSV 385
E+ L + + G + ++ + + +HNFHNFT + D S +R++ AD
Sbjct: 345 EQDLKRKRTWRVGADMMEKLRETARKFEATHNFHNFTVGREFGDRSTQRHMKKIEIADPA 404
Query: 386 VNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPE 445
V E +++ GQSFMLHQ+RKM+ V VR P +I+ L ++ +P P
Sbjct: 405 VYGE-TEWVSVMFHGQSFMLHQVRKMMAALVLSVRTGTPAHVIDE-LYGPRDVFIPKMPS 462
Query: 446 VGLYLDECIFASYNKK 461
+GL L+ IF SYN+K
Sbjct: 463 LGLLLEHPIFDSYNRK 478
>gi|349581609|dbj|GAA26766.1| K7_Pus1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 544
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ + + ++ + R+ART
Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAART 133
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + I+ P + +++N LP IR++ +RV +F+ +K C R Y YL
Sbjct: 134 DKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWYEYL 193
Query: 179 LPVFAL 184
LP ++L
Sbjct: 194 LPTYSL 199
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
+F Y+G+HNFHNFT ++PSA R++ I V+ +++ ++ GQS
Sbjct: 296 KFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHGQS 355
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FMLHQIRKM+ +A + R P I A + IN+P AP +GL L+ +F YNK+
Sbjct: 356 FMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEAPVFEGYNKR 413
>gi|207340711|gb|EDZ68976.1| YPL212Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 544
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ + + ++ + R+ART
Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAART 133
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + I+ P + +++N LP IR++ +RV +F+ +K C R Y YL
Sbjct: 134 DKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWYEYL 193
Query: 179 LPVFAL 184
LP ++L
Sbjct: 194 LPTYSL 199
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
+F Y+G+HNFHNFT ++PSA R++ I V+ +++ ++ GQS
Sbjct: 296 KFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHGQS 355
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FMLHQIRKM+ +A + R P I A + IN+P AP +GL L+ +F YNK+
Sbjct: 356 FMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEAPVFEGYNKR 413
>gi|452843249|gb|EME45184.1| hypothetical protein DOTSEDRAFT_87604 [Dothistroma septosporum
NZE10]
Length = 679
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 93/169 (55%), Gaps = 11/169 (6%)
Query: 22 PDPKRLKMSATSTSDDERDLIPAAAGA------DSTTKRQLCKRRKIAIFFAYCGVGYQG 75
PD +R AT E+ L A G D + +RK+A+ Y G GY+G
Sbjct: 99 PDKRRRNEEAT-----EKRLREGATGQGIEFSKDEIDAEERRPKRKVAVLIGYSGTGYKG 153
Query: 76 MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCI 135
MQ + KTIEGDL +A +GA+S+ + +P++ R ARTDKGV A G ++S + +
Sbjct: 154 MQISGTEKTIEGDLFQAFIKAGAISKANAEDPKKSSLVRCARTDKGVHAAGNMISLKLIV 213
Query: 136 DPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+ +V+++N L QIR++G +R SF+ + CD R Y YL+P +A
Sbjct: 214 EDDDIVDKINEALSPQIRVWGIERAIGSFSCYQACDSRWYEYLIPSYAF 262
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 8/130 (6%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGAD--SVVNVEG-----IDFLKCE 397
R L YVG+ N+HN+T + +DPSA+R+I SF + SV+ +G ++L +
Sbjct: 483 RIQDALNRYVGTRNYHNYTIQKTFKDPSAKRHIKSFQVNTKSVLIGDGPEDEKTEWLSMK 542
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFAS 457
V GQSFM+HQIRKMIG+ +VR ++ + + ++P P +GL L+ +F S
Sbjct: 543 VHGQSFMMHQIRKMIGMVTILVRAGGQLDQMDKSF-TEARYSIPKVPGLGLLLERPVFDS 601
Query: 458 YNKKWKDSHE 467
YN + H+
Sbjct: 602 YNTQQATKHD 611
>gi|156836479|ref|XP_001642300.1| hypothetical protein Kpol_228p5 [Vanderwaltozyma polyspora DSM
70294]
gi|156112794|gb|EDO14442.1| hypothetical protein Kpol_228p5 [Vanderwaltozyma polyspora DSM
70294]
Length = 562
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 82/132 (62%)
Query: 53 KRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDW 112
K + +RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ + + ++ +
Sbjct: 70 KEKRLPKRKVAVMVGYCGTGYHGMQYNPPNPTIEDALFKAFVQAGAISKANSNDLKKNGF 129
Query: 113 ARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
R+ARTDKGV A G ++S + I+ P + +++N LP I+++ +RV +F+ +K C
Sbjct: 130 MRAARTDKGVHAGGNLISLKMIIEDPEIKQKINEELPNGIKVWNIERVNKAFDCRKMCGS 189
Query: 173 RRYVYLLPVFAL 184
R Y YLLP ++L
Sbjct: 190 RWYEYLLPTYSL 201
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCE 397
+E+ +F + Y+G+HNFHNFT +DPSA R++ I V+ +++ +
Sbjct: 293 DEKLTKFRNAMNEYLGAHNFHNFTLGKDFKDPSAIRFMKEIRVSDPFVIGAAKTEWISIK 352
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFAS 457
+ GQSFMLHQIRKMI +A V R P S I A IN+P AP +GL L+ +F
Sbjct: 353 IHGQSFMLHQIRKMISMATLVTRCGCPVSRISQAYGPQ-KINIPKAPALGLLLESPVFEG 411
Query: 458 YNKK 461
YNK+
Sbjct: 412 YNKR 415
>gi|156538138|ref|XP_001608257.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Nasonia vitripennis]
Length = 437
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 84/154 (54%), Gaps = 11/154 (7%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
KR+ A+ YCG Y GMQ+NPG TIE +L +A+ + ++ + ++ R+A
Sbjct: 69 IKRKNYAMMLGYCGKNYYGMQRNPGFNTIEEELIKAMLKADLITSEAFETIQNINFQRAA 128
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
RTDKGVSAV QVVS + DP + +N LP IR+F KRVT FN+K CD R Y
Sbjct: 129 RTDKGVSAVRQVVSLKLPEDPSK--DSINETLPEDIRVFAIKRVTKGFNSKSQCDARTYS 186
Query: 177 YLLPVFAL---------DSSSHRDRESVMASLGS 201
Y +P FAL + S + D E M L +
Sbjct: 187 YTMPTFALAPENLELFQEMSEYNDVEKRMEQLST 220
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 137/285 (48%), Gaps = 46/285 (16%)
Query: 218 VIGVMGKRTYQLGLPSND-----ENASLNSQVKVDTVVSTCNGDRHNTNLE-SVESNKTI 271
++G GK Y G+ N E + + +K D + S N N + + ++K +
Sbjct: 77 MLGYCGKNYY--GMQRNPGFNTIEEELIKAMLKADLITSEAFETIQNINFQRAARTDKGV 134
Query: 272 SESVMV------ENANSESVNETLVE---------------------SRT------SETV 298
S V E+ + +S+NETL E +RT + +
Sbjct: 135 SAVRQVVSLKLPEDPSKDSINETLPEDIRVFAIKRVTKGFNSKSQCDARTYSYTMPTFAL 194
Query: 299 QNENTDLSLDLDSKND-SKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSH 357
EN +L ++ ND K M + +++G+ + +E K++ +LK G+H
Sbjct: 195 APENLELFQEMSEYNDVEKRMEQLSTIDGK----PFHEYRLPQERKEKLTELLKVLEGTH 250
Query: 358 NFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVA 417
NFHNFT++ DP A+RYI+SF A+ V ++F+ +V GQSFMLHQIRKM+ + +
Sbjct: 251 NFHNFTSKVLPLDPRAKRYIMSFIAEEPFLVNNMEFITLKVKGQSFMLHQIRKMVAMVIG 310
Query: 418 VVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
V+RN P+ E + + ++ AP +GL L+ + YNK++
Sbjct: 311 VIRNIVPREEFEKTVFEQAKYDITIAPSLGLMLNIVHYDYYNKRY 355
>gi|444726440|gb|ELW66974.1| tRNA pseudouridine synthase A, mitochondrial [Tupaia chinensis]
Length = 452
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E ++ NR+L Y G+HNFHNFT++ +PSARR+++ + EG++F +V G
Sbjct: 253 EALQQVNRLLACYQGTHNFHNFTSQKGPREPSARRFVLEMYCEEPFEREGLEFAVIKVKG 312
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFM HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL L+ F YN+
Sbjct: 313 QSFMTHQIRKMVGLLVAIVKGYAPESVLERSW-GEAKVHVPKAPGLGLVLERVHFEKYNQ 371
Query: 461 KW 462
++
Sbjct: 372 RF 373
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 81/122 (66%), Gaps = 9/122 (7%)
Query: 76 MQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR 132
+Q+N G+ +TIE DL AL SG + E + R+ + R ARTDKGVSA GQVVS +
Sbjct: 126 LQRNVGSSQFRTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLK 185
Query: 133 -FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRD 191
+ ID ++E++NS+LP+ IRI G KRVT FN+K CD R Y+Y+LP FA +H+D
Sbjct: 186 VWLID--DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYLYMLPTFAF---AHKD 240
Query: 192 RE 193
R+
Sbjct: 241 RD 242
>gi|238883128|gb|EEQ46766.1| tRNA pseudouridine synthase 1 [Candida albicans WO-1]
Length = 461
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
Query: 66 FAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
YCG GY GMQ +P KTIE D+ +A+ +GA+S + + ++ + R+ARTDKGV
Sbjct: 2 LGYCGTGYNGMQVQNDPNVKTIEKDIYDAMATAGAISAENAVDLKKSGFQRAARTDKGVH 61
Query: 124 AVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
A G V+S + I+ P ++ ++N LP QIRI+G +R T F+ +K C R Y YLLP F+
Sbjct: 62 AAGNVISLKMIIEDPEIINKINDLLPKQIRIWGIQRTTKGFDCRKCCSSRIYEYLLPTFS 121
Query: 184 L 184
L
Sbjct: 122 L 122
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
+ F ++K Y G+HNFHNFT +D SA R++I +EG +++ ++ GQSF
Sbjct: 235 QHFREVMKQYEGTHNFHNFTVGKPFKDTSANRFMIKTIVSDPFVIEGTEWISIKIHGQSF 294
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWK 463
MLHQIRKMI +A VVR P +I Q IN+P AP +GL L+ +F YN K
Sbjct: 295 MLHQIRKMIAMAALVVRLSLPCGIINNFFQ-STKINIPKAPALGLLLENPVFDGYNIKLT 353
Query: 464 DSHEE 468
S E
Sbjct: 354 KSDYE 358
>gi|323302662|gb|EGA56468.1| Pus1p [Saccharomyces cerevisiae FostersB]
Length = 544
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ + + ++ + R+ART
Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAART 133
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + I+ P + +++N LP IR++ +RV +F+ +K C R Y YL
Sbjct: 134 DKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWYEYL 193
Query: 179 LPVFAL 184
LP ++L
Sbjct: 194 LPTYSL 199
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
+F Y+G+HNFHNFT ++PSA R++ I V+ +++ ++ GQS
Sbjct: 296 KFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHGQS 355
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FMLHQIRKM+ +A + R P I A + IN+P AP +GL L+ +F YNK+
Sbjct: 356 FMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEAPVFEGYNKR 413
>gi|170072176|ref|XP_001870114.1| tRNA pseudouridine synthase A [Culex quinquefasciatus]
gi|167868280|gb|EDS31663.1| tRNA pseudouridine synthase A [Culex quinquefasciatus]
Length = 431
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
K+RK I Y GV Y GMQ+NPG KTIE +L A+ + +S+ P++ + R+A
Sbjct: 91 VKKRKCIILMGYSGVNYFGMQRNPGTKTIEEELLVAMLKNEWISDEAFKQPQQIQFQRAA 150
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
RTDKGVSA QVVS + P L + LN +LP QIR+F KRVT FN+K CD R Y
Sbjct: 151 RTDKGVSAATQVVSIKL---PENLDIAGLNKDLPEQIRVFAVKRVTKGFNSKSNCDARTY 207
Query: 176 VYLLPVFALDSSSHRDRESV 195
Y LP A ++H + SV
Sbjct: 208 TYTLPTVAF--AAHDEEVSV 225
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEG--IDFLKCE 397
E+ ++ LK + G+ NFHNFT+R + DPS +R+I+SF ++ EG ++F +
Sbjct: 232 EDRIQKVQETLKLFEGTKNFHNFTSRKEFIDPSVKRFIMSFECEAPFVPEGTTVEFATIK 291
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFAS 457
+ GQSFMLHQIRKM+GL +AVVR P I A + + VPTAP +GL L +
Sbjct: 292 IKGQSFMLHQIRKMVGLTLAVVRGLTPPETIMKAFE-ETRYGVPTAPGLGLVLSRIHYEK 350
Query: 458 YNKKW 462
YN ++
Sbjct: 351 YNVRY 355
>gi|366986575|ref|XP_003673054.1| hypothetical protein NCAS_0A01030 [Naumovozyma castellii CBS 4309]
gi|342298917|emb|CCC66663.1| hypothetical protein NCAS_0A01030 [Naumovozyma castellii CBS 4309]
Length = 543
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 79/126 (62%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+ + YCG GY GMQ NP TIE L +A +GA+S+ + + ++ + R+ART
Sbjct: 80 KRKVVVMVGYCGTGYCGMQYNPPNPTIEAALFKAFVEAGAISKDNSNDLKKSGFMRAART 139
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G +VS + I+ P + E++N LP IR++ +RV +F+ +K C R Y YL
Sbjct: 140 DKGVHAGGNLVSLKMIIEDPQIKEKINEKLPEGIRVWDIERVNKAFDCRKLCSSRWYEYL 199
Query: 179 LPVFAL 184
LP ++L
Sbjct: 200 LPTYSL 205
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 96/188 (51%), Gaps = 17/188 (9%)
Query: 283 ESVNETLVESRTSETVQNENTDLSLDLDSKNDS-----KVMAEERSVNGEEKLLKGSGFC 337
E VN+ L E+ T+E ++ D DS KV ++ N + + S
Sbjct: 240 EGVNKELAETFTNEELEAIKNYFPPPRDEFEDSEELYLKVKKYKQIENAHRRKYRISN-- 297
Query: 338 YGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLK 395
E+ +F ++ Y+G+HNFHNFT +DPSA R+I I V+ +++
Sbjct: 298 ---EKLTKFRSTMEQYLGAHNFHNFTLGKDFKDPSAIRFIKAIKVSDPFVIGDAKTEWVS 354
Query: 396 CEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETA--LQKDVNINVPTAPEVGLYLDEC 453
++ GQSFMLHQIRKM+ +A V R +P I A +QK IN+P AP +GL L+
Sbjct: 355 IKIHGQSFMLHQIRKMVSMATLVTRCGSPTERITQAYGVQK---INIPKAPALGLLLEAP 411
Query: 454 IFASYNKK 461
++ YN K
Sbjct: 412 VYEGYNAK 419
>gi|149236317|ref|XP_001524036.1| tRNA pseudouridine synthase 1 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452412|gb|EDK46668.1| tRNA pseudouridine synthase 1 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 445
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 76/122 (62%), Gaps = 2/122 (1%)
Query: 65 FFAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
YCG GY G+Q +P KTIE DL AL +GA+S + + ++ + R ARTDKGV
Sbjct: 1 MLGYCGTGYNGLQIQNDPNVKTIERDLYTALHKAGAISLENSLDLKKSGFQRCARTDKGV 60
Query: 123 SAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVF 182
A G VVS + I+ P + E++N +LP QIRI+G +R T F+ +K C R Y YLLP +
Sbjct: 61 HAAGNVVSLKMIIEDPEIKEKINEHLPQQIRIWGIQRTTKGFDCRKMCSSRVYEYLLPTY 120
Query: 183 AL 184
+L
Sbjct: 121 SL 122
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 7/123 (5%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGA-------DSVVNVEGIDFLKCE 397
F + ++ Y G+HNFHNFT + P + RYIIS DS + +++ +
Sbjct: 236 HFRQAMQQYEGTHNFHNFTVGKTYKSPDSSRYIISAKVSEPFVIDDSENSSHATEWVSVK 295
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFAS 457
+ GQSFMLHQIRKMI +A VR P + K +N+P AP +GL L+ +F +
Sbjct: 296 IHGQSFMLHQIRKMICMAALTVRCKLPAEKLLAMCFKPEKLNIPKAPALGLLLENPVFDA 355
Query: 458 YNK 460
YNK
Sbjct: 356 YNK 358
>gi|449679562|ref|XP_002163885.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Hydra
magnipapillata]
Length = 434
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 99/198 (50%), Gaps = 24/198 (12%)
Query: 53 KRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDR-----GNP 107
K ++RK+A+ AYCG Y GMQKNP +TIE L +AL A+ + N
Sbjct: 83 KADFSRKRKVALLLAYCGANYSGMQKNPDVETIEEKLLDALCEMKAIRAEHKHEFLVNNV 142
Query: 108 RRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
+ + R+ARTDKGVSA Q VS + + +E +N LP IR+FG +RVT SFNAK
Sbjct: 143 NQISFQRAARTDKGVSAARQTVSLKL-VASNTFLEDVNKLLPDDIRVFGLERVTKSFNAK 201
Query: 168 KFCDQRRYVYLLPVFALD------SSSHRDRESVMASLGSGNELVKCLECSERGRKVIGV 221
C R Y YL+P FA S S+R + A L N L C E G
Sbjct: 202 CCCSGRAYEYLIPSFAFAPSNDVFSPSYRISDEQFAKL---NRLFSCYE---------GT 249
Query: 222 MGKRTYQLGLPSNDENAS 239
+ G P +D++A+
Sbjct: 250 HNFHNFTSGKPFSDQSAN 267
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 77/123 (62%), Gaps = 3/123 (2%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVV 399
+E+ + NR+ Y G+HNFHNFT+ D SA RYIISF A+ +G +F+ E+
Sbjct: 233 DEQFAKLNRLFSCYEGTHNFHNFTSGKPFSDQSANRYIISFKANKPFECQGHEFIAIEIS 292
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIE-TALQKDVNINVPTAPEVGLYLDECIFASY 458
GQSFM+HQIRKMIGL +AV R P+ IE + LQ +I P AP +GL L + + Y
Sbjct: 293 GQSFMIHQIRKMIGLVIAVCRGHCPEDTIEKSWLQAKADI--PKAPGLGLLLCKVFYNHY 350
Query: 459 NKK 461
N+K
Sbjct: 351 NEK 353
>gi|194744150|ref|XP_001954558.1| GF18329 [Drosophila ananassae]
gi|190627595|gb|EDV43119.1| GF18329 [Drosophila ananassae]
Length = 410
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 92/169 (54%), Gaps = 10/169 (5%)
Query: 25 KRLKMSATSTSDDERDLIPAAAGADSTT--KRQLCKRRKIAIFFAYCGVGYQGMQKNPGA 82
KR K T DDE AA+G KR+K AI +YCG Y GMQ+NPG
Sbjct: 37 KRKKWVDWKTQDDE----DAASGVKRAPFDPADRIKRKKSAILLSYCGANYYGMQRNPGM 92
Query: 83 KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGL-V 141
+TIE +L +A+ ++E + + R+ARTDKGVSA QV S + P L +
Sbjct: 93 QTIEEELFKAMLKHKWITEDSFEQVQIACFQRAARTDKGVSAARQVCSVKL---PDELDL 149
Query: 142 ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHR 190
E N++LP QIR+FG +RVT FNAK C+ R Y Y LP A SS +
Sbjct: 150 EAFNADLPDQIRLFGVERVTKGFNAKDQCNARTYTYTLPTVAFASSEEK 198
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 79/114 (69%), Gaps = 2/114 (1%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISF-GADSVVNVEGIDFLKCEVVGQSFMLHQI 408
LK Y G+ NFHNFT++ DPSA+R+I+SF +D ++ +GI+F+ +V GQSFMLHQI
Sbjct: 220 LKLYEGTKNFHNFTSKKNFLDPSAKRFIMSFVSSDPFLSPQGIEFVTLKVKGQSFMLHQI 279
Query: 409 RKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
RKM+GLA+A+VR +E AL ++ +++P AP +GL LD + YN ++
Sbjct: 280 RKMVGLAIAIVRGNTTTESLERALTEE-RLDLPMAPGLGLVLDTVHYERYNDRY 332
>gi|392589992|gb|EIW79322.1| pseudouridine synthase [Coniophora puteana RWD-64-598 SS2]
Length = 569
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+R A+ +CG G+ GMQ P +TIEG L +AL GAVS+ + +P + R+ART
Sbjct: 134 KRMTALLLGFCGRGFNGMQIQPDVRTIEGVLFDALVRVGAVSQDNADDPVKVSLGRAART 193
Query: 119 DKGVSAVGQVVSGRFCIDPPGL---VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
D GV A G +VS + PG+ +ERLN+ LP +IR++ RV SFNA+ CD R+Y
Sbjct: 194 DAGVHAAGNLVSMKLITAIPGVPDFIERLNTELPPEIRVWSEVRVQNSFNARTACDSRKY 253
Query: 176 VYLLPVFAL 184
YL P + L
Sbjct: 254 TYLFPSYLL 262
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
R + + G+HNFHNFT + +++R++ I G + G +++ GQS
Sbjct: 323 RLREAARAFEGTHNFHNFTVGRIFSERASQRHMKCIEVGDPEIHG--GTEWISVMFHGQS 380
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FMLHQ+RKM+ V R P +I+ V + VP P +GL L+ IF SYN +
Sbjct: 381 FMLHQVRKMMSALVLSSRIGTPARVIDEMYGPRV-VFVPKMPALGLLLEYPIFDSYNAR 438
>gi|134118796|ref|XP_771901.1| hypothetical protein CNBN0810 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254505|gb|EAL17254.1| hypothetical protein CNBN0810 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 560
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 109/203 (53%), Gaps = 22/203 (10%)
Query: 44 AAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSER 102
A ++ T + +R+ A+ YCG GYQGMQ ++ +TIEG++ AL +GAVS
Sbjct: 107 AWEPSEKTNGEKRLPKRRCAVLIGYCGTGYQGMQIQDHTDRTIEGEVFAALVKAGAVSAD 166
Query: 103 DRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPP------GLVERLNSNLPTQIRIFG 156
+ + R+ D AR+ARTD GV A G V+S + +PP + E +N+ LP QIR++G
Sbjct: 167 NAIDARKVDIARAARTDAGVHAAGNVISIKMITEPPLPEGFKDVAEYVNTFLPDQIRMWG 226
Query: 157 YKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGR 216
+ R SFNA+ D R Y YLLP + L H+D + L K L+ S
Sbjct: 227 WVRTVKSFNARTAADSRIYEYLLPSYCL-IPPHKD-----------DSLAKHLDLSSPDW 274
Query: 217 KVIGVMGKRTY---QLGLPSNDE 236
+ I G ++ +L +P++DE
Sbjct: 275 REIVGEGPCSFADARLPMPTSDE 297
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
RF I+ Y G+HNF+N+T D + +R++I I+++ ++ GQSFM
Sbjct: 323 RFRDIIAQYKGTHNFYNYTVGKPFNDRAVKRFMIKLEVKEPKVYGEIEWISVQIHGQSFM 382
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
LHQIRKMI +A+ R +P SL+ I++P AP +GL L+ F YN +
Sbjct: 383 LHQIRKMISMAMLACRTGSPPSLLPETFGPK-KIHIPKAPPLGLLLEAPQFGVYNDR 438
>gi|323449394|gb|EGB05282.1| hypothetical protein AURANDRAFT_12283 [Aureococcus anophagefferens]
Length = 239
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNP---GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RK+A+ Y G Y G+QK TIE L+EAL +GAV E ++G+ + W+R+
Sbjct: 5 KRKLALLLGYRGANYYGLQKQSKESDLPTIELALQEALNRAGAVHEGNQGDLSKIGWSRA 64
Query: 116 ARTDKGVSAVGQVVSGRFCI---DPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
ARTDK VSA QVVS + + D P L+ERLN LP I++F RV FN K+ CD+
Sbjct: 65 ARTDKRVSAARQVVSAKLEVENDDVPALLERLNGELPDDIKVFDAVRVIKGFNCKQSCDR 124
Query: 173 RRYVYLLPVFAL 184
R Y YLLP F L
Sbjct: 125 RHYTYLLPTFLL 136
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVV-----NVEGIDFLKCEV 398
+R L YVG+ +HNFT + K D +A+R+I+SF AD +G +++K +V
Sbjct: 164 ERLRGFLAAYVGTRKYHNFTNKLKPTDMAAQRFIVSFTADDPTYPSGDAADGAEWVKLDV 223
Query: 399 VGQSFMLHQIRKMIGL 414
VGQSF++H IRKM+ +
Sbjct: 224 VGQSFLMHMIRKMVAV 239
>gi|58262434|ref|XP_568627.1| pseudouridylate synthase [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230801|gb|AAW47110.1| pseudouridylate synthase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 560
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 109/203 (53%), Gaps = 22/203 (10%)
Query: 44 AAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSER 102
A ++ T + +R+ A+ YCG GYQGMQ ++ +TIEG++ AL +GAVS
Sbjct: 107 AWEPSEKTNGEKRLPKRRCAVLIGYCGTGYQGMQIQDHTDRTIEGEVFAALVKAGAVSAD 166
Query: 103 DRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPP------GLVERLNSNLPTQIRIFG 156
+ + R+ D AR+ARTD GV A G V+S + +PP + E +N+ LP QIR++G
Sbjct: 167 NAIDARKVDIARAARTDAGVHAAGNVISIKMITEPPLPEGFKDVAEYVNTFLPDQIRMWG 226
Query: 157 YKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGR 216
+ R SFNA+ D R Y YLLP + L H+D + L K L+ S
Sbjct: 227 WVRTVKSFNARTAADSRIYEYLLPSYCL-IPPHKD-----------DSLAKHLDLSSPDW 274
Query: 217 KVIGVMGKRTY---QLGLPSNDE 236
+ I G ++ +L +P++DE
Sbjct: 275 REIVGEGPCSFADARLPMPTSDE 297
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
RF I+ Y G+HNF+N+T D + +R++I I+++ ++ GQSFM
Sbjct: 323 RFRDIIAQYKGTHNFYNYTVGKPFNDRAVKRFMIKLEVKEPKVYGEIEWISVQIHGQSFM 382
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
LHQIRKMI +A+ R +P SL+ I++P AP +GL L+ F YN +
Sbjct: 383 LHQIRKMISMAMLACRTGSPPSLLPETFGPK-KIHIPKAPPLGLLLEAPQFGVYNDR 438
>gi|405123828|gb|AFR98591.1| pseudouridylate synthase [Cryptococcus neoformans var. grubii H99]
Length = 539
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 108/194 (55%), Gaps = 23/194 (11%)
Query: 53 KRQLCKRRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYD 111
+++L KRR A+ YCG GYQGMQ ++ +TIEG++ AL +GAVS + + R+ D
Sbjct: 96 EKRLPKRR-CAVLIGYCGTGYQGMQIQDHTDRTIEGEIFAALVKAGAVSADNAVDARKVD 154
Query: 112 WARSARTDKGVSAVGQVVSGRFCIDPP------GLVERLNSNLPTQIRIFGYKRVTASFN 165
AR+ARTD GV A G V+S + +PP + E +N+ LP QIR++G+ R SFN
Sbjct: 155 IARAARTDAGVHAAGNVISIKMITEPPLPEGFKDVAEYVNTFLPDQIRMWGWVRTVKSFN 214
Query: 166 AKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKR 225
A+ D R Y YLLP + L H+D + L K L+ S + I G
Sbjct: 215 ARTAADSRIYEYLLPSYCL-IPPHKD-----------DPLAKHLDISSPDWRDIVGEGPC 262
Query: 226 TY---QLGLPSNDE 236
++ +L +P++DE
Sbjct: 263 SFADARLPMPTSDE 276
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
RF I+ Y G+HNF+N+T D + +R++I I+++ ++ GQSFM
Sbjct: 302 RFRDIIAQYKGTHNFYNYTVGKPFNDRAVKRFMIKLEVKEPKVYGEIEWISVQIHGQSFM 361
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
LHQIRKMI +A+ R +P SL+ I++P AP +GL L+ F YN +
Sbjct: 362 LHQIRKMISMAMLACRTGSPPSLLPETFGPK-KIHIPKAPPLGLLLEAPQFGVYNDR 417
>gi|125586190|gb|EAZ26854.1| hypothetical protein OsJ_10771 [Oryza sativa Japonica Group]
Length = 516
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 111/418 (26%), Positives = 171/418 (40%), Gaps = 72/418 (17%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKN---PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWA 113
+++++ + Y G Y+G+QK TIE LE A+F +G + E + G ++ W
Sbjct: 69 ARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKVGWE 128
Query: 114 RSARTDKGVSAVGQVVSGRFCI-------DPPG--LVERLNSNLPTQIRIFGYKRVTASF 164
RS+RTDKGV ++ ++S + I DP G L +NSNLP +R+F SF
Sbjct: 129 RSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQRSF 188
Query: 165 NAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGK 224
+ ++ C R Y+YLLP + E VM L N ++K E +
Sbjct: 189 DVRRECLYREYLYLLPAEIIGIKGGCSSEEVMEHLSEFNSILKGFEGNHPFHNYTARAKY 248
Query: 225 RTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSES 284
R G KV S N +L+ S+ + E+ NS S
Sbjct: 249 RKVLAG-----------RHRKVKGASSAVNSMPTEMSLDQSSSDDGTTSDHDEEDLNSSS 297
Query: 285 VNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKK 344
+ + S E +N + S E+++ + + + +E
Sbjct: 298 I----IGSSVPEDSYKDNPEFS--------------------EKQVQIRARWLHEPDEND 333
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVGQSF 403
R N SH F + T + E IS G V + + G+ F
Sbjct: 334 RLN-------ASH-FRDILTFSCGE------LQISSGIQFVELTISGVSF---------- 369
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
MLHQIRKM+G +VAV R P+ +I +L K I +P AP L L + F NK+
Sbjct: 370 MLHQIRKMVGTSVAVKRGLLPKDIIALSLAKFSRIVLPIAPSEVLVLRDNSFCLRNKQ 427
>gi|115452911|ref|NP_001050056.1| Os03g0338600 [Oryza sativa Japonica Group]
gi|108708043|gb|ABF95838.1| tRNA pseudouridine synthase family protein, expressed [Oryza sativa
Japonica Group]
gi|113548527|dbj|BAF11970.1| Os03g0338600 [Oryza sativa Japonica Group]
Length = 516
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 111/418 (26%), Positives = 171/418 (40%), Gaps = 72/418 (17%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKN---PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWA 113
+++++ + Y G Y+G+QK TIE LE A+F +G + E + G ++ W
Sbjct: 69 ARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKVGWE 128
Query: 114 RSARTDKGVSAVGQVVSGRFCI-------DPPG--LVERLNSNLPTQIRIFGYKRVTASF 164
RS+RTDKGV ++ ++S + I DP G L +NSNLP +R+F SF
Sbjct: 129 RSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQRSF 188
Query: 165 NAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGK 224
+ ++ C R Y+YLLP + E VM L N ++K E +
Sbjct: 189 DVRRECLYREYLYLLPAEIIGIKGGCSSEEVMEHLSEFNSILKGFEGNHPFHNYTARAKY 248
Query: 225 RTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSES 284
R G KV S N +L+ S+ + E+ NS S
Sbjct: 249 RKVLAG-----------RHRKVKGASSAVNSMPTEMSLDQSSSDDGTTSDHDEEDLNSSS 297
Query: 285 VNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKK 344
+ + S E +N + S E+++ + + + +E
Sbjct: 298 I----IGSSVPEDSYKDNPEFS--------------------EKQVQIRARWLHEPDEND 333
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVGQSF 403
R N SH F + T + E IS G V + + G+ F
Sbjct: 334 RLN-------ASH-FRDILTFSCGE------LQISSGIQFVELTISGVSF---------- 369
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
MLHQIRKM+G +VAV R P+ +I +L K I +P AP L L + F NK+
Sbjct: 370 MLHQIRKMVGTSVAVKRGLLPKDIIALSLAKFSRIVLPIAPSEVLVLRDNSFCLRNKQ 427
>gi|388583219|gb|EIM23521.1| pseudouridine synthase [Wallemia sebi CBS 633.66]
Length = 531
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 19 RQEPDPKRLKMSATSTSDDERDLIPAAAG----ADSTTKRQLCKRRKIAIFFAYCGVGYQ 74
RQ D KR DD R+ AG +D T +RK A+ +CG GY
Sbjct: 26 RQRSD-KRATKQPGQPLDDRREWTREWAGLPKSSDITQSGPKLPKRKCAVIIGFCGTGYN 84
Query: 75 GMQKNP--GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR 132
GMQ P KTIEGD+ A+ +G +S + +P + + R+ARTD V A V+S +
Sbjct: 85 GMQIQPHGNVKTIEGDIFVAMIKAGVISPDNSTDPGKVNLQRAARTDASVHAAFNVISLK 144
Query: 133 FCID---PPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+D P +VE++N +LP IRI+G+ R SF+A+ CD R Y YLLP +
Sbjct: 145 MIVDLPDTPDIVEKINEHLPNHIRIWGFVRTQNSFDARTSCDSRSYEYLLPSYVF 199
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
R L + GSHNF ++T D S++R++ VEG +++ GQSFM
Sbjct: 247 RARETLAQFEGSHNFWSYTIGKGFRDRSSQRFMKKLTIQDPFLVEGNEWISVRFYGQSFM 306
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKD 464
LHQIRKMI + V VVR P SLI T D+ I VP AP +GL L++ F YN + K+
Sbjct: 307 LHQIRKMIFMLVNVVRTGTPASLIPTTYT-DLPIVVPKAPGLGLLLEKPHFNVYNSRVKE 365
Query: 465 SHE 467
++E
Sbjct: 366 NNE 368
>gi|195449703|ref|XP_002072187.1| GK22713 [Drosophila willistoni]
gi|194168272|gb|EDW83173.1| GK22713 [Drosophila willistoni]
Length = 412
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 84/130 (64%), Gaps = 2/130 (1%)
Query: 334 SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFG-ADSVVNVEGID 392
S +C E ++ L+ Y G+ NFHNFT++ DPSA+R+I+ F +D + +GI+
Sbjct: 204 STYCISPEHLQKVRETLQLYEGTKNFHNFTSKKNFLDPSAKRFIMLFSCSDPFKSPQGIE 263
Query: 393 FLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDE 452
F+ +V GQSFMLHQIRKM+GLA+A+VR S +E AL ++ +++P AP +GL LD
Sbjct: 264 FVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTTSTLERALTEE-RLDLPMAPGLGLVLDT 322
Query: 453 CIFASYNKKW 462
+ YN ++
Sbjct: 323 VHYERYNDRY 332
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 81/139 (58%), Gaps = 5/139 (3%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
KR+K AI +YCG Y GMQ+NPG +TIE +L + + ++E + + R+AR
Sbjct: 62 KRKKSAILLSYCGANYFGMQRNPGMQTIEEELFKVMLKHKWITEDSFEQVQIACFQRAAR 121
Query: 118 TDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
TDKGVSA QV S + P L ++ N +LP QIR+FG +RVT FNAK C+ R Y
Sbjct: 122 TDKGVSAARQVCSVKL---PDDLDLKAFNEDLPEQIRLFGVERVTKGFNAKDQCNARTYT 178
Query: 177 YLLPVFAL-DSSSHRDRES 194
Y LP A S D+E+
Sbjct: 179 YTLPTVAFAPCQSESDKEA 197
>gi|149756822|ref|XP_001493954.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Equus
caballus]
Length = 351
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 89/146 (60%), Gaps = 16/146 (10%)
Query: 74 QGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS 130
+GMQ+N G+ KTIE DL AL SG + E + R+ + R ARTDKGVSA GQVVS
Sbjct: 26 EGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVS 85
Query: 131 GR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSH 189
+ + ID ++E++NS+LP+ IRI G KRVT FN+K CD R Y Y+LP FA +H
Sbjct: 86 LKVWLID--DILEKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYFYMLPTFAF---AH 140
Query: 190 RDRES-------VMASLGSGNELVKC 208
+DR+ +L S N L+ C
Sbjct: 141 KDRDVQDETYRLTAETLQSVNRLLAC 166
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLH 406
NR+L Y G+HNFHNFT++ +PSA+RYI+ + EG++F +V GQSFM H
Sbjct: 161 NRLLACYKGTHNFHNFTSQKGPREPSAQRYILDMYCEEPFVREGMEFAVIKVKGQSFMTH 220
Query: 407 QIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
QIRKM+GL VA+V+ AP+S++ + + ++VP AP +GL L+ F YN+++
Sbjct: 221 QIRKMVGLVVAIVKGYAPESVLARSW-GEAKVDVPKAPGLGLVLERVHFEKYNQRF 275
>gi|332029057|gb|EGI69071.1| tRNA pseudouridine synthase A [Acromyrmex echinatior]
Length = 398
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 83/141 (58%), Gaps = 4/141 (2%)
Query: 50 STTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRR 109
+T Q KR+ A+ Y G Y GMQ+NPG KTIE DL AL + +++ N R
Sbjct: 33 ATETVQRIKRKNHAMLLGYVGKDYYGMQRNPGMKTIEEDLIIALLKADLITKEQFENTRA 92
Query: 110 YDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKF 169
++ R+ARTDKGVSA+ Q+VS + + V +N LP IR+FG KRVT FN+K
Sbjct: 93 INFQRAARTDKGVSAIRQIVSLKLPENSNKTV--INQFLPDAIRVFGIKRVTKGFNSKNQ 150
Query: 170 CDQRRYVYLLP--VFALDSSS 188
CD R Y Y++P FAL+ S
Sbjct: 151 CDARTYRYVIPSYAFALEDQS 171
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 11/135 (8%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
R N ILK + GSHNFHNFT++ K DP ARRYIISF + I+ E+ GQSFM
Sbjct: 208 RLNSILKLFEGSHNFHNFTSKVKPLDPRARRYIISFCCTETFVLNDIELAVLEIKGQSFM 267
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK--- 461
LHQIRKM+ + +A+ RN + I+ A + +++P AP +GL L + +Y+K+
Sbjct: 268 LHQIRKMVAIVIAIARNMISKETIDEAFKTMDKMDLPLAPSLGLCLCHVHYDNYSKRYGT 327
Query: 462 --------WKDSHEE 468
WK+ EE
Sbjct: 328 DGLHETLDWKECEEE 342
>gi|393243262|gb|EJD50777.1| pseudouridine synthase, partial [Auricularia delicata TFB-10046
SS5]
Length = 470
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 4/129 (3%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNP---GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+R+ A+ FAY G G+ G+Q +P GA T+E + +AL GA+S + +P + W R+
Sbjct: 9 KRQHAVLFAYSGTGWNGLQYHPPESGAVTVENTIFDALVKVGAISTDNADDPYKLKWQRA 68
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
ARTD GV A+ V+S + CI P LVE LN+ LP IR++ RV SFN+ FC+ R Y
Sbjct: 69 ARTDAGVHALANVLSAQLCIV-PNLVENLNAALPPNIRVWDIIRVQNSFNSHTFCESRYY 127
Query: 176 VYLLPVFAL 184
Y LP + L
Sbjct: 128 SYTLPTYLL 136
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 2/128 (1%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLK 395
F E ++ + ++G H +HNFT DP +RR + + D G++++K
Sbjct: 172 FRVSPEVLEKMRELTSPFIGKHFYHNFTAAALPGDPDSRRTLHTITIDDPFVRGGLEWVK 231
Query: 396 CEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDV--NINVPTAPEVGLYLDEC 453
+ GQSF++HQIRKM V R P +++ + + +VP AP GL L+
Sbjct: 232 VNLHGQSFIMHQIRKMAAALVLCTRTDTPGAVLRALMDRRAPGRTHVPRAPAPGLVLERP 291
Query: 454 IFASYNKK 461
+F Y ++
Sbjct: 292 VFDGYYRR 299
>gi|156405521|ref|XP_001640780.1| predicted protein [Nematostella vectensis]
gi|156227916|gb|EDO48717.1| predicted protein [Nematostella vectensis]
Length = 300
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 76/122 (62%), Gaps = 7/122 (5%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E+ + N+ L +Y G+ N+HNFT+ K EDPSA RYIISF G +F+ V G
Sbjct: 134 EKIEEINKALSNYKGTKNYHNFTSGKKFEDPSANRYIISFKCGKPFERNGREFVVLTVKG 193
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSF+LHQIRKMIGL +AVVR AP S + I++P AP +GL LD F +YNK
Sbjct: 194 QSFVLHQIRKMIGLVIAVVRGVAPSSTFDL-------IDIPKAPALGLVLDTVHFDAYNK 246
Query: 461 KW 462
K+
Sbjct: 247 KF 248
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 76/126 (60%), Gaps = 1/126 (0%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K A+ +YCGVGY GMQ NPG +TIE L AL + +++ + + + R ART
Sbjct: 1 KKKCALLISYCGVGYAGMQINPGVRTIEEQLINALHQAEVITDDAKECLGKMSFQRCART 60
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGVSA QVVS + L+ ++NS LP +IRIFG + T +F+ K+ C R Y YL
Sbjct: 61 DKGVSAARQVVSLKIS-ALSSLLPKINSFLPPEIRIFGMIKTTKAFDCKQNCSARTYEYL 119
Query: 179 LPVFAL 184
P FA
Sbjct: 120 TPTFAF 125
>gi|403215359|emb|CCK69858.1| hypothetical protein KNAG_0D01060 [Kazachstania naganishii CBS
8797]
Length = 550
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 79/126 (62%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ YCG GY GMQ NP TIE L +A SGA+S+ + + ++ + R+ART
Sbjct: 75 KRKVAVMVGYCGTGYCGMQYNPPNPTIEATLFKAFCDSGAISQDNANDLKKNGFMRAART 134
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + I+ P + +++N LP IR++ RV +F+ +K C R Y YL
Sbjct: 135 DKGVHAGGNLISVKLIIEDPTIKQKINECLPEGIRVWDINRVNKAFDCRKMCSSRWYEYL 194
Query: 179 LPVFAL 184
LP ++L
Sbjct: 195 LPTYSL 200
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCE 397
+E+ +F +K Y+ +HNFHNFT +DPSA R++ I V+ +++ +
Sbjct: 292 KEKLTKFRSAMKQYINAHNFHNFTLGKDFKDPSAIRFMKEIKVSEPFVIGDAQTEWVSIK 351
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFAS 457
+ GQSFMLHQIRKMI +A + R P I A IN+P AP +GL L+ ++
Sbjct: 352 IHGQSFMLHQIRKMISMATLITRCGTPVERISQAYGPQ-KINIPKAPALGLLLESPVYEG 410
Query: 458 YNKK 461
YN +
Sbjct: 411 YNSR 414
>gi|449529415|ref|XP_004171695.1| PREDICTED: putative tRNA pseudouridine synthase-like [Cucumis
sativus]
Length = 421
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 162/378 (42%), Gaps = 70/378 (18%)
Query: 85 IEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS------GRFCIDPP 138
IE +LE+A++ +G + + + GN + WARS+RTDKGV ++ ++ G ID P
Sbjct: 14 IEQELEDAIYKAGGICDSNYGNLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDP 73
Query: 139 ---GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESV 195
L + +NS LP I++FG F+ +K CD R Y YLLP + S +
Sbjct: 74 CGISLADYINSYLPDNIKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEI 133
Query: 196 MASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNG 255
+ +++K E + Y+ + + +L S KV G
Sbjct: 134 DCHISDFKDILKSFEGDHPFH---NYTVRSIYRTRIRAKQLVYALKSGKKVSP------G 184
Query: 256 DRHNTNLE-SVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKND 314
D N+ E S + N T E + + S S+ ++ E+ T + E
Sbjct: 185 DMSNSEFEGSDQENDTFVEGIKEPDQRSPSL--SVCENLTEVCSKLE------------- 229
Query: 315 SKVMAEERSVNGEEKLLKG--SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPS 372
+G E LLKG + + + +EK R +G+ +F
Sbjct: 230 ----------DGSE-LLKGVRARWLHEPDEKDR--------IGASHF------------- 257
Query: 373 ARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETAL 432
R I+ + G DF++ + G+SFMLHQIRKMI AVAV R P+ +I +L
Sbjct: 258 --RRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSL 315
Query: 433 QKDVNINVPTAPEVGLYL 450
K I +P AP L L
Sbjct: 316 TKFSRIVLPIAPAEVLVL 333
>gi|449472493|ref|XP_004153611.1| PREDICTED: putative tRNA pseudouridine synthase-like [Cucumis
sativus]
Length = 464
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 162/378 (42%), Gaps = 70/378 (18%)
Query: 85 IEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS------GRFCIDPP 138
IE +LE+A++ +G + + + GN + WARS+RTDKGV ++ ++ G ID P
Sbjct: 57 IEQELEDAIYKAGGICDSNYGNLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDP 116
Query: 139 ---GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESV 195
L + +NS LP I++FG F+ +K CD R Y YLLP + S +
Sbjct: 117 CGISLADYINSYLPDNIKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEI 176
Query: 196 MASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNG 255
+ +++K E + Y+ + + +L S KV G
Sbjct: 177 DCHISDFKDILKSFEGDHPFH---NYTVRSIYRTRIRAKQLVYALKSGKKVSP------G 227
Query: 256 DRHNTNLE-SVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKND 314
D N+ E S + N T E + + S S+ ++ E+ T + E
Sbjct: 228 DMSNSEFEGSDQENDTFVEGIKEPDQRSPSL--SVCENLTEVCSKLE------------- 272
Query: 315 SKVMAEERSVNGEEKLLKG--SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPS 372
+G E LLKG + + + +EK R +G+ +F
Sbjct: 273 ----------DGSE-LLKGVRARWLHEPDEKDR--------IGASHF------------- 300
Query: 373 ARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETAL 432
R I+ + G DF++ + G+SFMLHQIRKMI AVAV R P+ +I +L
Sbjct: 301 --RRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSL 358
Query: 433 QKDVNINVPTAPEVGLYL 450
K I +P AP L L
Sbjct: 359 TKFSRIVLPIAPAEVLVL 376
>gi|321265516|ref|XP_003197474.1| pseudouridylate synthase [Cryptococcus gattii WM276]
gi|317463954|gb|ADV25687.1| Pseudouridylate synthase, putative [Cryptococcus gattii WM276]
Length = 560
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 9/146 (6%)
Query: 53 KRQLCKRRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYD 111
+++L KRR A+ YCG GYQGMQ ++ +TIEG++ AL +GAVS + + R+ D
Sbjct: 117 EKRLPKRR-CAVLIGYCGTGYQGMQIQDHTDRTIEGEIFAALVKAGAVSADNAVDARKVD 175
Query: 112 WARSARTDKGVSAVGQVVSGRFCIDPP------GLVERLNSNLPTQIRIFGYKRVTASFN 165
AR+ARTD GV A G V+S + +PP + E +N+ LP QIR++G+ R SFN
Sbjct: 176 IARAARTDAGVHAAGNVISIKMITEPPLPEGFKNVAEYVNTFLPDQIRMWGWVRTVKSFN 235
Query: 166 AKKFCDQRRYVYLLPVFALDSSSHRD 191
A+ D R Y YLLP + L H+D
Sbjct: 236 ARTAADSRIYEYLLPSYCL-IPPHKD 260
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
RF I+ Y G+HNF+N+T D + +R++I I+++ ++ GQSFM
Sbjct: 323 RFRDIIAQYKGTHNFYNYTVGKPFNDRAVKRFMIQLEVKEPKVYGEIEWISVQIHGQSFM 382
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
LHQIRKMI +A+ R +P SL+ I++P AP +GL L+ F YN +
Sbjct: 383 LHQIRKMISMAMLACRTGSPPSLLPETFGPK-KIHIPKAPPLGLLLEAPQFGVYNDR 438
>gi|225559412|gb|EEH07695.1| tRNA pseudouridine synthase [Ajellomyces capsulatus G186AR]
Length = 612
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 78/122 (63%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY+GMQ + KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 120 KKKVAVMLGYSGSGYKGMQLSETEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCART 179
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + ++ P +V+++N +L QIR++G + SF++ CD R Y YL
Sbjct: 180 DKGVHAAGNVVSLKLIVEDPNVVQKINGHLSPQIRVWGIEITNKSFSSYHLCDSRIYEYL 239
Query: 179 LP 180
+P
Sbjct: 240 IP 241
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 93/176 (52%), Gaps = 10/176 (5%)
Query: 290 VESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCY--GEEEKKRFN 347
V S+ + NEN DLS S ++ V ++ G+ Y E R N
Sbjct: 340 VTSKEASASTNENKDLS----SGDEQTVHTTNEAIRIIRAAYLGAKKAYRIPRERMDRIN 395
Query: 348 RILKHYVGSHNFHNFTTRTKAEDPSARRYIISFG-ADSVVNVEGIDFLKCEVVGQSFMLH 406
L YVG+ NFHN+T + D SA+R+I SF + + + G ++L +V GQSFM+H
Sbjct: 396 DALGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLIINGTEWLSLKVHGQSFMMH 455
Query: 407 QIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
QIRKM+ +A +VR C + + ET D I +P AP +GL L+ IF SYNK+
Sbjct: 456 QIRKMVAMAALIVRCGCDIKLVPETY--GDQKIAIPKAPGLGLLLERPIFDSYNKR 509
>gi|367002137|ref|XP_003685803.1| hypothetical protein TPHA_0E02790 [Tetrapisispora phaffii CBS 4417]
gi|357524102|emb|CCE63369.1| hypothetical protein TPHA_0E02790 [Tetrapisispora phaffii CBS 4417]
Length = 558
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 77/126 (61%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ YCG GY GMQ NP TIE +L A +G +S + + ++ + R+ART
Sbjct: 69 KRKVAVMVGYCGAGYHGMQYNPPNDTIESELFRAFVRAGGISLANSNDLKKNGFMRAART 128
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G ++S + I+ P + +++N LP IR++ +RV +F+ +K C R Y YL
Sbjct: 129 DKGVHAGGNLISLKMIIEDPDIKDKINEALPESIRVWNIERVNKAFDCRKMCGSRWYEYL 188
Query: 179 LPVFAL 184
LP + L
Sbjct: 189 LPTYTL 194
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
+F ++ Y+G+HNFHNFT +PS+ RY+ I+ V+ +++ ++ GQS
Sbjct: 291 KFRGAMQKYLGAHNFHNFTLGKDFSEPSSIRYMKEITVSEPFVIGEAKTEWVSIKIHGQS 350
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FMLHQIRKMI +A + R P I+ + IN+P AP +GL L+ +F YNK+
Sbjct: 351 FMLHQIRKMISMATLITRCGCPLERIDASFGPQ-KINIPKAPALGLLLESPVFEGYNKR 408
>gi|195158909|ref|XP_002020326.1| GL13924 [Drosophila persimilis]
gi|194117095|gb|EDW39138.1| GL13924 [Drosophila persimilis]
Length = 409
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 79/130 (60%), Gaps = 4/130 (3%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
KR+K AI +YCG Y GMQ+NPG +TIE +L +A+ ++E + + R+AR
Sbjct: 68 KRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFDQVQIACFQRAAR 127
Query: 118 TDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
TDKGVSA Q+ S + P L +E N++LP QIR+FG +RVT FNAK C+ R Y
Sbjct: 128 TDKGVSAARQICSVKL---PEELDLEAFNADLPEQIRLFGVERVTKGFNAKDQCNARTYT 184
Query: 177 YLLPVFALDS 186
Y LP A S
Sbjct: 185 YTLPTVAFAS 194
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 80/119 (67%), Gaps = 2/119 (1%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF-GADSVVNVEGIDFLKCEVVGQSF 403
R LK Y G+ NFHNFT++ DPSA+R+I++F ++ + +G++F+ +V GQSF
Sbjct: 213 RVKETLKLYEGTKNFHNFTSKKNFLDPSAKRFIMAFTSSEPFQSPQGVEFVTLKVKGQSF 272
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
MLHQIRKM+GLA+A+VR +E AL ++ +++P AP +GL LD + YN+++
Sbjct: 273 MLHQIRKMVGLAIAIVRGNTTAITLERALTEE-RLDLPMAPGLGLVLDTVHYERYNERY 330
>gi|393226898|gb|EJD34606.1| pseudouridine synthase [Auricularia delicata TFB-10046 SS5]
Length = 531
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 81/142 (57%), Gaps = 6/142 (4%)
Query: 49 DSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNP---GAKTIEGDLEEALFHSGAVSERDRG 105
D + +Q +RK A+ +CG G+ GMQ+ A+TIEG+L AL +GA+SE +
Sbjct: 92 DGASSKQRLPKRKCALLLGFCGTGFNGMQRQARQLNARTIEGELFAALVKAGAISEDNAD 151
Query: 106 NPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG---LVERLNSNLPTQIRIFGYKRVTA 162
+P + RSARTD GV A G VVS + + PG LV +N LP IR++ RV
Sbjct: 152 DPSKSQLQRSARTDSGVHAAGNVVSIKLITEVPGVPDLVAHINDLLPPSIRLWSIVRVQN 211
Query: 163 SFNAKKFCDQRRYVYLLPVFAL 184
SF+A+ CD R+Y Y+ P L
Sbjct: 212 SFSARTSCDSRKYTYVFPSHIL 233
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFML 405
F L Y G+HNFHNFT + + +D + R+I + + + +GI+++ GQSFML
Sbjct: 291 FRAALAEYHGTHNFHNFTVQKEFDDVTTSRFIKTTEVPAPLERDGIEWISVLFHGQSFML 350
Query: 406 HQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
HQ RKMI A+ + R P SL+ L +++P AP +GL L+ +F SYN K
Sbjct: 351 HQ-RKMISAALLLARTGTPPSLM-NELYGPPKVHIPKAPALGLLLEYPLFESYNTK 404
>gi|242001376|ref|XP_002435331.1| pseudouridylate synthase, putative [Ixodes scapularis]
gi|215498661|gb|EEC08155.1| pseudouridylate synthase, putative [Ixodes scapularis]
Length = 442
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 91/162 (56%), Gaps = 16/162 (9%)
Query: 25 KRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKT 84
KRLK S T TS+ E L A A +K+A+ +Y G Y GMQ+NPG KT
Sbjct: 50 KRLK-SETETSNSESQLGKAKA-------------KKMALCMSYNGKDYLGMQRNPGTKT 95
Query: 85 IEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFC--IDPPGLVE 142
IE DL +A++ + + P+ + R+ARTDKGVSAV Q+VS + + +V+
Sbjct: 96 IEDDLLQAMYKGDLILKEHVDVPQAMKFQRAARTDKGVSAVRQIVSLKLPTNLTVEEMVD 155
Query: 143 RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
++NS+L QIR+ KR T FN K CD R Y Y+LP FA
Sbjct: 156 KINSHLVDQIRVIDIKRTTRGFNCKNSCDSRTYTYVLPTFAF 197
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVV 399
EE N +L Y G HN+HNFT+ K+EDPSA RYIIS +F++ ++
Sbjct: 212 EERIGEVNNVLALYKGCHNYHNFTSGKKSEDPSAMRYIISAECAQPFVQGDQEFVQVQIK 271
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
GQSFMLHQIRKM+GL +A++R C ++ I A + +++P AP +GL L+E + YN
Sbjct: 272 GQSFMLHQIRKMVGLVIAIMRGCTKETTIRRAWGPE-KLDLPIAPALGLMLEEVHYDRYN 330
Query: 460 KKW 462
K++
Sbjct: 331 KRY 333
>gi|346472531|gb|AEO36110.1| hypothetical protein [Amblyomma maculatum]
Length = 449
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLH 406
N++L + G HNFHNFT+ K++DPSA RYIIS ++FL+ ++ GQSFMLH
Sbjct: 217 NKVLALFKGCHNFHNFTSGKKSQDPSAMRYIISIECGQPFMAGNLEFLQIQIKGQSFMLH 276
Query: 407 QIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
QIRKM+GL +A++R QS+I A + +++P AP +GL L+ + YN+++
Sbjct: 277 QIRKMVGLVIAIMRGHTDQSIIRRAWGPE-RLDIPIAPALGLMLEHVHYDRYNRRY 331
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 88/159 (55%), Gaps = 7/159 (4%)
Query: 31 ATSTSDDERDLIPAAAGADSTTKRQL-CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDL 89
A +E+D+ + ++++ L K +K+A+ Y G Y GMQ+NPG KTIE DL
Sbjct: 39 ALENDGEEKDIKRLKSDSEASNAEALRVKAKKMALCMCYSGKDYLGMQRNPGTKTIEEDL 98
Query: 90 EEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRF----CIDPPGLVERLN 145
A++ + P+ + R+ARTDKGVSAV QVVS + ID +V R+N
Sbjct: 99 LTAMYKGELIQREHIDIPQNVKFQRAARTDKGVSAVRQVVSLKLPTNIAIDE--MVARIN 156
Query: 146 SNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
S+L QIR+ KR T FN K CD R Y Y+LP F+
Sbjct: 157 SHLVDQIRVIDIKRTTRGFNCKNSCDSRTYSYMLPSFSF 195
>gi|125773069|ref|XP_001357793.1| GA17995 [Drosophila pseudoobscura pseudoobscura]
gi|54637526|gb|EAL26928.1| GA17995 [Drosophila pseudoobscura pseudoobscura]
Length = 409
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 79/130 (60%), Gaps = 4/130 (3%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
KR+K AI +YCG Y GMQ+NPG +TIE +L +A+ ++E + + R+AR
Sbjct: 68 KRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFDQVQIACFQRAAR 127
Query: 118 TDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
TDKGVSA Q+ S + P L +E N++LP QIR+FG +RVT FNAK C+ R Y
Sbjct: 128 TDKGVSAARQICSVKL---PEELDLEAFNADLPEQIRLFGVERVTKGFNAKDQCNARTYT 184
Query: 177 YLLPVFALDS 186
Y LP A S
Sbjct: 185 YTLPTVAFAS 194
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 80/119 (67%), Gaps = 2/119 (1%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF-GADSVVNVEGIDFLKCEVVGQSF 403
R LK Y G+ NFHNFT++ DPSA+R+I++F ++ + +G++F+ +V GQSF
Sbjct: 213 RVKETLKLYEGTKNFHNFTSKKNFLDPSAKRFIMAFTSSEPFQSPQGVEFVTLKVKGQSF 272
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
MLHQIRKM+GLA+A+VR ++ AL ++ +++P AP +GL LD + YN+++
Sbjct: 273 MLHQIRKMVGLAIAIVRGNTTAITLDRALTEE-RLDLPMAPGLGLVLDTVHYERYNERY 330
>gi|195113035|ref|XP_002001075.1| GI22173 [Drosophila mojavensis]
gi|193917669|gb|EDW16536.1| GI22173 [Drosophila mojavensis]
Length = 401
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 77/128 (60%), Gaps = 4/128 (3%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
KR+K AI +YCG Y GMQ+NPG +TIE +L +A+ ++E + + R+AR
Sbjct: 68 KRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQVQIACFQRAAR 127
Query: 118 TDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
TDKGVSA QV S + P L +E N +LP QIRIFG +RVT FNAK C+ R Y
Sbjct: 128 TDKGVSAARQVCSVKL---PEELDLEAFNKDLPEQIRIFGVERVTKGFNAKDQCNARTYT 184
Query: 177 YLLPVFAL 184
Y LP A
Sbjct: 185 YTLPTIAF 192
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 78/114 (68%), Gaps = 2/114 (1%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADS-VVNVEGIDFLKCEVVGQSFMLHQI 408
LK Y G+ NFHNFT++ DPSA+R+I+SF + ++ + ++F+ +V GQSFMLHQI
Sbjct: 218 LKLYEGTKNFHNFTSKKNFLDPSAKRFIMSFTCSTPFLSPQSVEFVTLKVKGQSFMLHQI 277
Query: 409 RKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
RKM+GLA+A+VR + +E AL ++ +++P AP +GL LD + YN ++
Sbjct: 278 RKMVGLAIAIVRGNTTTATLERALTEE-RLDLPMAPGLGLVLDTVHYERYNDRY 330
>gi|440301846|gb|ELP94232.1| tRNA pseudouridine synthase A, putative [Entamoeba invadens IP1]
Length = 406
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query: 48 ADSTTKRQLCKRRKIAIFFAYCGVGYQG-MQKNPGAKTIEGDLEEALFHSGAVSERDRGN 106
+ TK Q K+ K+A+ +Y G GYQG M G KTIEGD+E A++ +G +SE ++ +
Sbjct: 36 VEKATKHQKVKKTKVALIVSYVGRGYQGSMYLKNGEKTIEGDVENAIYLAGCISEDNKHD 95
Query: 107 PRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNA 166
++ W+R ARTDKGVSA + S + D +ER+NS+LP IR+ RV F+A
Sbjct: 96 FKKVSWSRCARTDKGVSAANNIFSLKMGTD-GNFIERINSHLPETIRVMDCVRVRRLFDA 154
Query: 167 KKFCDQRRYVYLLPVFAL 184
D R Y Y+ P +AL
Sbjct: 155 HTRVDNRNYEYVFPSYAL 172
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSAR---RYIISFGADSVVNVEGIDFLKC 396
EE+ + FN ++ HY+ SHNF N+T TK P ++ R I+S A ++V G+D +
Sbjct: 190 EEDIQYFNFVIGHYIRSHNFQNYTYNTKETTPESQSNIRNILSIEA-TLVQRNGLDLVVV 248
Query: 397 EVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNIN-----VPTAPEVGLYLD 451
+ GQSFM++QIRKM+G A+ + + ++++ ++ + VPTAP GL+L+
Sbjct: 249 ALKGQSFMIYQIRKMVGFALMLTNMRYSKEMVDSIMETSFTLVKWRSLVPTAPPYGLFLE 308
Query: 452 ECIFASYN 459
C F YN
Sbjct: 309 RCNFDVYN 316
>gi|296812761|ref|XP_002846718.1| tRNA pseudouridylate synthase Lsp1 [Arthroderma otae CBS 113480]
gi|238841974|gb|EEQ31636.1| tRNA pseudouridylate synthase Lsp1 [Arthroderma otae CBS 113480]
Length = 576
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 75/122 (61%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+ + Y G GY GMQ KTIEGDL A + A+S+ + +P++ + R ART
Sbjct: 98 KKKVIVMLGYSGTGYHGMQLCATEKTIEGDLFAAFVAANAISKANAMDPKKSSFVRCART 157
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + I+ P +V+++N L QIR++G T F+A +FCD R Y YL
Sbjct: 158 DKGVHAAGNVVSLKLIIEDPDIVQKINEKLNPQIRVWGIIPATKGFSAYQFCDSRMYEYL 217
Query: 179 LP 180
+P
Sbjct: 218 IP 219
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 73/122 (59%), Gaps = 4/122 (3%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCEVVGQS 402
R N L YVG+ NFHN+T + DPSA+R I SF D VV + G ++L +V GQS
Sbjct: 362 RINEALSLYVGTRNFHNYTIQKTFRDPSAKRLIKSFKISRDPVV-INGTEWLSLKVHGQS 420
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
FM+HQIRKM+ + +VR A IE + Q+ I +P AP +GL L+ IF YN+K
Sbjct: 421 FMMHQIRKMVAMVALLVRCGADIHRIEESYQRP-RIPIPKAPGLGLLLERPIFDGYNRKA 479
Query: 463 KD 464
D
Sbjct: 480 TD 481
>gi|260944536|ref|XP_002616566.1| hypothetical protein CLUG_03807 [Clavispora lusitaniae ATCC 42720]
gi|238850215|gb|EEQ39679.1| hypothetical protein CLUG_03807 [Clavispora lusitaniae ATCC 42720]
Length = 229
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 78/122 (63%), Gaps = 2/122 (1%)
Query: 65 FFAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
YCG GY GMQ NP KTIE ++ +A +GAVS+ + + ++ + R+ARTDKGV
Sbjct: 1 MIGYCGTGYNGMQIQNNPDVKTIEAEIFKAFIAAGAVSQENSTDLKKNGFMRAARTDKGV 60
Query: 123 SAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVF 182
A G V+S + ++ ++ ++NS+LP +IR++G +RV SF+ +K C R Y YLLP
Sbjct: 61 HAAGNVISCKLILEDEDIMHKINSHLPEKIRLWGIERVNRSFDCRKLCSSRVYEYLLPTH 120
Query: 183 AL 184
+L
Sbjct: 121 SL 122
>gi|195353947|ref|XP_002043463.1| GM23177 [Drosophila sechellia]
gi|194127604|gb|EDW49647.1| GM23177 [Drosophila sechellia]
Length = 411
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 79/131 (60%), Gaps = 4/131 (3%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
KR+K AI +YCG Y GMQ+NPG +TIE +L +A+ ++E + + R+A
Sbjct: 67 IKRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAA 126
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
RTDKGVSA QV S + P L +E N++LP QIR+FG +RVT FNAK C+ R Y
Sbjct: 127 RTDKGVSAARQVCSVKL---PEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNARTY 183
Query: 176 VYLLPVFALDS 186
Y LP A S
Sbjct: 184 TYTLPTVAFAS 194
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 80/120 (66%), Gaps = 2/120 (1%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF-GADSVVNVEGIDFLKCEVVGQS 402
++ LK Y G+ NFHNFT++ DPS++R+I+SF ++ + + I+F+ +V GQS
Sbjct: 214 QKVKETLKLYEGTKNFHNFTSKKSFLDPSSKRFIMSFTSSEPFRSPQDIEFVTLKVKGQS 273
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
FMLHQIRKM+GLA+A+VR + +E AL ++ +++P AP +GL LD + YN ++
Sbjct: 274 FMLHQIRKMVGLAIAIVRGNTTAATLERALTEE-RLDLPMAPGLGLVLDTVHYERYNDRY 332
>gi|295660198|ref|XP_002790656.1| tRNA pseudouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226281531|gb|EEH37097.1| tRNA pseudouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 600
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 78/123 (63%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY GMQ + KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 105 KRKVAVLLGYSGSGYHGMQLSQTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCART 164
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + ++ +V+++N++L QIR++G + SF++ + CD R Y YL
Sbjct: 165 DKGVHAAGNVVSLKLIVEDSNVVQKINNHLSPQIRVWGIEVTNKSFSSYQLCDSRVYEYL 224
Query: 179 LPV 181
+P
Sbjct: 225 IPT 227
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 73/120 (60%), Gaps = 6/120 (5%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCEVVGQS 402
R N L YVG+ NFHN+T + + SA+R+I SF D V+ + G ++L +V GQS
Sbjct: 381 RINDALDLYVGTRNFHNYTIQKSFCEASAKRHIKSFKISRDPVI-INGTEWLSLKVHGQS 439
Query: 403 FMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FM+HQIRKM+ + VVR C Q + ET D I +P AP +GL L+ IF SYNK+
Sbjct: 440 FMMHQIRKMVAMVAMVVRCGCDIQRIPET--YGDQKIAIPKAPGLGLLLERPIFDSYNKR 497
>gi|194899730|ref|XP_001979411.1| GG15313 [Drosophila erecta]
gi|190651114|gb|EDV48369.1| GG15313 [Drosophila erecta]
Length = 410
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 78/129 (60%), Gaps = 4/129 (3%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
KR+K AI +YCG Y GMQ+NPG +TIE +L +A+ ++E + + R+A
Sbjct: 67 IKRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAA 126
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
RTDKGVSA QV S + P L +E N++LP QIR+FG +RVT FNAK C+ R Y
Sbjct: 127 RTDKGVSAARQVCSVKL---PEDLDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNARTY 183
Query: 176 VYLLPVFAL 184
Y LP A
Sbjct: 184 TYTLPTMAF 192
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 83/128 (64%), Gaps = 2/128 (1%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF-GADSVVNVEGIDFL 394
F E ++ LK Y G+ NFHNFT++ DPS++R+I+SF +D + +GI+F+
Sbjct: 206 FQISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPSSKRFIMSFTSSDPFRSPQGIEFV 265
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454
+V GQSFMLHQIRKM+GLA+A+VR + +E AL ++ +++P AP +GL LD
Sbjct: 266 TLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTEE-RLDLPMAPGLGLVLDTVH 324
Query: 455 FASYNKKW 462
+ YN ++
Sbjct: 325 YERYNDRY 332
>gi|195569417|ref|XP_002102706.1| GD20050 [Drosophila simulans]
gi|194198633|gb|EDX12209.1| GD20050 [Drosophila simulans]
Length = 411
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 79/131 (60%), Gaps = 4/131 (3%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
KR+K AI +YCG Y GMQ+NPG +TIE +L +A+ ++E + + R+A
Sbjct: 67 IKRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAA 126
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
RTDKGVSA QV S + P L +E N++LP QIR+FG +RVT FNAK C+ R Y
Sbjct: 127 RTDKGVSAARQVCSVKL---PEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNARTY 183
Query: 176 VYLLPVFALDS 186
Y LP A S
Sbjct: 184 TYTLPTVAFAS 194
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 80/120 (66%), Gaps = 2/120 (1%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF-GADSVVNVEGIDFLKCEVVGQS 402
++ LK Y G+ NFHNFT++ DPS++R+I+SF ++ + + I+F+ +V GQS
Sbjct: 214 QKVKETLKLYEGTKNFHNFTSKKSFLDPSSKRFIMSFTSSEPFRSPQDIEFVTLKVKGQS 273
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
FMLHQIRKM+GLA+A+VR + +E AL ++ +++P AP +GL LD + YN ++
Sbjct: 274 FMLHQIRKMVGLAIAIVRGNTTAATLERALTEE-RLDLPMAPGLGLVLDTVHYERYNDRY 332
>gi|91076290|ref|XP_968649.1| PREDICTED: similar to AGAP002409-PA [Tribolium castaneum]
Length = 588
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
KRRK A+ Y G Y GMQ+NP TIE + +AL+ + +SE + + + R+A
Sbjct: 252 IKRRKFAVLLGYSGTNYYGMQRNPNTPTIEEEFFKALYKNNYISEENFTQVQTMQFQRAA 311
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
RTDKGVSA QVVS + D + ++N LP IR+FG +RVT FN+K CD R Y
Sbjct: 312 RTDKGVSAARQVVSLKLREDID--ISKINEQLPEVIRVFGIRRVTKGFNSKVQCDSRSYT 369
Query: 177 YLLPVFAL 184
YLLP +
Sbjct: 370 YLLPTVSF 377
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Query: 323 SVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGA 382
S ++L+ GF + R N +L+ Y+G+ NFHNFT++ +A DPSA+RY+ +
Sbjct: 376 SFTPHDQLMVQKGFRLDDSTLNRINDLLQKYLGTKNFHNFTSKKQATDPSAKRYMKTLIC 435
Query: 383 DSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPT 442
+ + ++F ++ GQSFMLHQIRKM+GL +AVV+ + ++ A D +N+P
Sbjct: 436 EKPFVKDDVEFALIKIRGQSFMLHQIRKMVGLLIAVVKGYTSEDTLDLAFGMD-KVNIPK 494
Query: 443 APEVGLYLDECIFASYNKKW 462
AP +GL LD + Y+ ++
Sbjct: 495 APGLGLLLDYVHYERYDNRY 514
>gi|270002527|gb|EEZ98974.1| hypothetical protein TcasGA2_TC004829 [Tribolium castaneum]
Length = 390
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
KRRK A+ Y G Y GMQ+NP TIE + +AL+ + +SE + + + R+A
Sbjct: 54 IKRRKFAVLLGYSGTNYYGMQRNPNTPTIEEEFFKALYKNNYISEENFTQVQTMQFQRAA 113
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
RTDKGVSA QVVS + D + ++N LP IR+FG +RVT FN+K CD R Y
Sbjct: 114 RTDKGVSAARQVVSLKLREDID--ISKINEQLPEVIRVFGIRRVTKGFNSKVQCDSRSYT 171
Query: 177 YLLPVFAL 184
YLLP +
Sbjct: 172 YLLPTVSF 179
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Query: 323 SVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGA 382
S ++L+ GF + R N +L+ Y+G+ NFHNFT++ +A DPSA+RY+ +
Sbjct: 178 SFTPHDQLMVQKGFRLDDSTLNRINDLLQKYLGTKNFHNFTSKKQATDPSAKRYMKTLIC 237
Query: 383 DSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPT 442
+ + ++F ++ GQSFMLHQIRKM+GL +AVV+ + ++ A D +N+P
Sbjct: 238 EKPFVKDDVEFALIKIRGQSFMLHQIRKMVGLLIAVVKGYTSEDTLDLAFGMD-KVNIPK 296
Query: 443 APEVGLYLDECIFASYNKKW 462
AP +GL LD + Y+ ++
Sbjct: 297 APGLGLLLDYVHYERYDNRY 316
>gi|195391039|ref|XP_002054173.1| GJ24293 [Drosophila virilis]
gi|194152259|gb|EDW67693.1| GJ24293 [Drosophila virilis]
Length = 408
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 79/117 (67%), Gaps = 2/117 (1%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADS-VVNVEGIDFLKCEVVGQSFML 405
N LK Y G+ NFHNFT++ DPSA+RYI+SF + ++ + I+F+ +V GQSFML
Sbjct: 215 NTTLKLYEGTKNFHNFTSKKNFLDPSAKRYIMSFTCSAPFLSPQSIEFVTLQVKGQSFML 274
Query: 406 HQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
HQIRKM+GLA+A+VR + +E AL ++ +++P AP +GL LD + YN ++
Sbjct: 275 HQIRKMVGLAIAIVRGNTTTATLERALTEE-RLDLPMAPGLGLVLDTVHYERYNDRY 330
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 77/129 (59%), Gaps = 4/129 (3%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
KR+K AI +YCG Y GMQ+NPG +TIE +L + + ++E + + R+A
Sbjct: 67 IKRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKVMLKHKWITEDSFEQVQIASFQRAA 126
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
RTDKGVSA QV S + P L ++ N++LP QIR+FG +RVT FNAK C+ R Y
Sbjct: 127 RTDKGVSAARQVCSVKL---PEELDLQAFNADLPDQIRLFGVERVTKGFNAKDQCNARTY 183
Query: 176 VYLLPVFAL 184
Y LP A
Sbjct: 184 TYTLPTIAF 192
>gi|255550749|ref|XP_002516423.1| hypothetical protein RCOM_1427170 [Ricinus communis]
gi|223544458|gb|EEF45978.1| hypothetical protein RCOM_1427170 [Ricinus communis]
Length = 82
Score = 110 bits (276), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/81 (66%), Positives = 64/81 (79%)
Query: 31 ATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLE 90
+T+TSD+E A +T K+Q K RKIAIFFAYCGVGYQGMQKNPG K+IEGDLE
Sbjct: 2 STTTSDEEEIATTAPGDEIATDKKQRYKCRKIAIFFAYCGVGYQGMQKNPGTKSIEGDLE 61
Query: 91 EALFHSGAVSERDRGNPRRYD 111
+ALFHSGAV ++DRG P+RYD
Sbjct: 62 KALFHSGAVPKQDRGCPKRYD 82
>gi|393221799|gb|EJD07283.1| pseudouridine synthase [Fomitiporia mediterranea MF3/22]
Length = 502
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 84/139 (60%), Gaps = 8/139 (5%)
Query: 49 DSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPR 108
D T+ +L KR A+ +CG GY+GMQ P KTIEG L +AL ++GAVS+ + +P
Sbjct: 48 DRTSTPRLPKRL-CALLIGFCGSGYKGMQIQPSEKTIEGVLFKALVNAGAVSKDNADDPV 106
Query: 109 RYDWARSARTDKGVSAVGQVVSGRFCIDPPG---LVERLNSNLPTQIRIFGYKRVTASFN 165
+ R+ARTD GV A G VVS + PG LV+R+N LP +IR++ ++RV SFN
Sbjct: 107 KVGLQRAARTDAGVHAAGNVVSMKIITHVPGIPDLVQRINEELPPEIRLWSFQRVQNSFN 166
Query: 166 AKKFCDQRRYVYLLPVFAL 184
A+ RRY Y P + L
Sbjct: 167 ARI----RRYTYFFPSYLL 181
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
Query: 324 VNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFG-A 382
V EE++++ + G+E+ + KH+ G+HNFHNFT +D S R++ A
Sbjct: 224 VTREEEMVRKKSWRVGKEKIEALREAAKHFEGTHNFHNFTVGRDTKDRSCFRHMKKIEVA 283
Query: 383 DSVVNVEGIDFLKCEVVGQSFMLHQI----RKMIGLAVAVVRNCAPQSLIETALQKDVNI 438
D VV E +++ + GQSFMLHQ+ RKM+ + V VR P ++I AL +N+
Sbjct: 284 DPVVYGE-TEWISVMLHGQSFMLHQVGGLQRKMMCVLVMSVRTGTPSNII-NALFGPLNV 341
Query: 439 NVPTAPEVGLYLDECIFASYNKK 461
+P P +GL L+ IF SY+K+
Sbjct: 342 VIPKMPSLGLLLENPIFESYSKR 364
>gi|24648455|ref|NP_650899.1| CG4159, isoform A [Drosophila melanogaster]
gi|7300636|gb|AAF55785.1| CG4159, isoform A [Drosophila melanogaster]
Length = 410
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 78/129 (60%), Gaps = 4/129 (3%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
KR+K AI +YCG Y GMQ+NPG +TIE +L +A+ ++E + + R+A
Sbjct: 67 IKRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAA 126
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
RTDKGVSA QV S + P L +E N++LP QIR+FG +RVT FNAK C+ R Y
Sbjct: 127 RTDKGVSAARQVCSVKL---PEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNARTY 183
Query: 176 VYLLPVFAL 184
Y LP A
Sbjct: 184 TYTLPTVAF 192
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 80/120 (66%), Gaps = 2/120 (1%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF-GADSVVNVEGIDFLKCEVVGQS 402
++ LK Y G+ NFHNFT++ DPS++R+I+SF ++ + + I+F+ +V GQS
Sbjct: 214 QKVKETLKLYEGTKNFHNFTSKKSFLDPSSKRFIMSFTSSEPFRSPQDIEFVTLKVKGQS 273
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
FMLHQIRKM+GLA+A+VR + +E AL ++ +++P AP +GL LD + YN ++
Sbjct: 274 FMLHQIRKMVGLAIAIVRGNTTAATLERALTEE-RLDLPMAPGLGLVLDTVHYERYNDRY 332
>gi|372099929|gb|AEX66197.1| FI18513p1 [Drosophila melanogaster]
Length = 467
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 4/128 (3%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
KR+K AI +YCG Y GMQ+NPG +TIE +L +A+ ++E + + R+AR
Sbjct: 125 KRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAAR 184
Query: 118 TDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
TDKGVSA QV S + P L +E N++LP QIR+FG +RVT FNAK C+ R Y
Sbjct: 185 TDKGVSAARQVCSVKL---PEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNARTYT 241
Query: 177 YLLPVFAL 184
Y LP A
Sbjct: 242 YTLPTVAF 249
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 78/114 (68%), Gaps = 2/114 (1%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISF-GADSVVNVEGIDFLKCEVVGQSFMLHQI 408
LK Y G+ NFHNFT++ DPS++R+I+SF ++ + + I+F+ +V GQSFMLHQI
Sbjct: 277 LKLYEGTKNFHNFTSKKSFLDPSSKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQI 336
Query: 409 RKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
RKM+GLA+A+VR + +E AL ++ +++P AP +GL LD + YN ++
Sbjct: 337 RKMVGLAIAIVRGNTTAATLERALTEE-RLDLPMAPGLGLVLDTVHYERYNDRY 389
>gi|67539990|ref|XP_663769.1| hypothetical protein AN6165.2 [Aspergillus nidulans FGSC A4]
gi|40738761|gb|EAA57951.1| hypothetical protein AN6165.2 [Aspergillus nidulans FGSC A4]
gi|259479643|tpe|CBF70055.1| TPA: tRNA pseudouridine synthase, putative (AFU_orthologue;
AFUA_2G08460) [Aspergillus nidulans FGSC A4]
Length = 574
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 78/122 (63%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY+GMQ + KTIEG+L A +GA+S+ + +P++ R ART
Sbjct: 78 KKKVAVLIGYSGTGYKGMQLSTTEKTIEGELFTAFVAAGAISKANAADPKKSSLVRCART 137
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G +VS + ++ P +V+++N +L QIR++G SF++ + CD R Y YL
Sbjct: 138 DKGVHAAGNIVSLKLIVEDPDIVQKINDHLSPQIRVWGILVANKSFSSYQMCDSRIYEYL 197
Query: 179 LP 180
+P
Sbjct: 198 IP 199
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKCEVVGQSF 403
R + L YVG+ NF+N+T + + DPSA+R+I SF + + ++G ++L +V GQSF
Sbjct: 346 RIQQALDKYVGTKNFYNYTIQKQYRDPSAKRHIKSFKLNPEPIIIDGTEWLSLKVHGQSF 405
Query: 404 MLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
M+HQIRKM+ +A VVR C P + ++ + + +P AP +GL L+ +F YNKK
Sbjct: 406 MMHQIRKMVAMATMVVRCGCDPARINDS--YGEFKMAIPKAPGLGLLLERPVFDGYNKKA 463
Query: 463 KDSHEE 468
D +E
Sbjct: 464 ADLKKE 469
>gi|410084294|ref|XP_003959724.1| hypothetical protein KAFR_0K02340 [Kazachstania africana CBS 2517]
gi|372466316|emb|CCF60589.1| hypothetical protein KAFR_0K02340 [Kazachstania africana CBS 2517]
Length = 370
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 82/148 (55%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+ K+A+ YCG Y GMQ N +TIEG L AL +GA+S+ + N + + R+ RT
Sbjct: 35 KHKVALMIGYCGDNYHGMQYNADVQTIEGALFRALCQAGAISKANSTNFNKNKFMRTTRT 94
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV AV ++S + I+ P + ER+NS LP I ++ +RV FN + C+ R Y Y
Sbjct: 95 DKGVHAVCNLISLKMIIEDPDIKERVNSFLPADITLWNIQRVNKKFNCRTACESRLYEYA 154
Query: 179 LPVFALDSSSHRDRESVMASLGSGNELV 206
LP F L + + S M L + +V
Sbjct: 155 LPTFVLQNPPSQSILSRMLQLFGHSPIV 182
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 12/137 (8%)
Query: 327 EEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVV 386
++ L FC+ F + L Y G+HNFHNFT+ + ++ RY+ +
Sbjct: 188 QDSTLSSKKFCH-------FEKCLSMYTGTHNFHNFTSNKASCADNSYRYMKAIAVSQPY 240
Query: 387 NVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQ--KDVNINVPTAP 444
++++ + GQSFMLHQIRKM+ LA V R P +TAL+ ++ +P AP
Sbjct: 241 LKNNLEWISIKFHGQSFMLHQIRKMVALATIVTRYDYP---CDTALKCFENKKTYIPNAP 297
Query: 445 EVGLYLDECIFASYNKK 461
+GL L +F+SYN+K
Sbjct: 298 SMGLTLLSPMFSSYNRK 314
>gi|115442996|ref|XP_001218305.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188174|gb|EAU29874.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1199
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 77/126 (61%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY+GMQ + KTIEG+L A +GA+S+ + +P++ R ART
Sbjct: 78 KKKVAVLLGYSGTGYKGMQLSDTEKTIEGELFTAFVAAGAISKANAADPKKSSLVRCART 137
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G VVS + ++ P +V+++N L QIR++ SF+A + CD R Y YL
Sbjct: 138 DKGVHAAGNVVSLKLIVEDPDIVQKINEKLSPQIRVWDILVANKSFSAYQMCDSRIYEYL 197
Query: 179 LPVFAL 184
+P +
Sbjct: 198 IPTYCF 203
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 75/122 (61%), Gaps = 7/122 (5%)
Query: 345 RFNRI---LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKCEVVG 400
R R+ L+ YVG++NF N+T + D SA+R+I SF D V + G ++L +V G
Sbjct: 341 RLTRVQVALEKYVGTNNFWNYTIQKTFTDASAKRHIKSFKLDPKPVIINGTEWLSLKVHG 400
Query: 401 QSFMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
QSFM+HQIRKM+ +A VVR C P+ IE A I +P AP +GL L+ +F SYN
Sbjct: 401 QSFMMHQIRKMVAMATLVVRCGCDPKR-IEDAYGP-TKIAIPKAPGLGLLLERPVFESYN 458
Query: 460 KK 461
KK
Sbjct: 459 KK 460
>gi|409040526|gb|EKM50013.1| hypothetical protein PHACADRAFT_153289 [Phanerochaete carnosa
HHB-10118-sp]
Length = 555
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 83/146 (56%), Gaps = 6/146 (4%)
Query: 45 AAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSE 101
A G D+ K +R+ A+ +CG GY GMQ + KTIEG L +AL GAVS+
Sbjct: 103 ARGNDNEPKEPRLPKRQTALLIGFCGSGYNGMQLQRNHENIKTIEGTLFDALVRVGAVSK 162
Query: 102 RDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG---LVERLNSNLPTQIRIFGYK 158
+ NP + ++ R+ARTD GV A G +VS + PG L+ R+N LP +IR++
Sbjct: 163 DNADNPAKVNFNRAARTDAGVHAAGNLVSMKMITSIPGVDNLIARINEELPQEIRLWDTV 222
Query: 159 RVTASFNAKKFCDQRRYVYLLPVFAL 184
RV +FNA+ C+ R+Y Y P + L
Sbjct: 223 RVQNAFNARTTCNARKYTYFFPSYLL 248
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
K + GSH FHNFT + +DP+++R + V +++ + GQSFMLHQ RK
Sbjct: 309 KKFEGSHKFHNFTVGQEYKDPTSQRIMKKIEVADPVVYGDTEWISVLLHGQSFMLHQ-RK 367
Query: 411 MIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
MI L V R P +++E L + +P P +GL L+ IF SYNKK
Sbjct: 368 MISLLVLACRTGTPPTVVE-ELYGPRSAFIPKMPALGLLLEYPIFDSYNKK 417
>gi|281362146|ref|NP_001163664.1| CG4159, isoform B [Drosophila melanogaster]
gi|272477072|gb|ACZ94960.1| CG4159, isoform B [Drosophila melanogaster]
Length = 442
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 78/129 (60%), Gaps = 4/129 (3%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
KR+K AI +YCG Y GMQ+NPG +TIE +L +A+ ++E + + R+A
Sbjct: 99 IKRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAA 158
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
RTDKGVSA QV S + P L +E N++LP QIR+FG +RVT FNAK C+ R Y
Sbjct: 159 RTDKGVSAARQVCSVKL---PEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNARTY 215
Query: 176 VYLLPVFAL 184
Y LP A
Sbjct: 216 TYTLPTVAF 224
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 78/114 (68%), Gaps = 2/114 (1%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISF-GADSVVNVEGIDFLKCEVVGQSFMLHQI 408
LK Y G+ NFHNFT++ DPS++R+I+SF ++ + + I+F+ +V GQSFMLHQI
Sbjct: 252 LKLYEGTKNFHNFTSKKSFLDPSSKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQI 311
Query: 409 RKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
RKM+GLA+A+VR + +E AL ++ +++P AP +GL LD + YN ++
Sbjct: 312 RKMVGLAIAIVRGNTTAATLERALTEE-RLDLPMAPGLGLVLDTVHYERYNDRY 364
>gi|321464083|gb|EFX75094.1| hypothetical protein DAPPUDRAFT_12957 [Daphnia pulex]
Length = 319
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 78/129 (60%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
K++K AI +Y G Y GMQ N G KT+EG+L +A + + +P+ + R+AR
Sbjct: 1 KKKKFAILLSYSGQNYLGMQFNHGFKTVEGELFQAFMKLEIMDDESFKSPQTVHFQRAAR 60
Query: 118 TDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
TDKGVSAV QV+S + LV +LNS LP I++F ++VT FN+K CD R Y Y
Sbjct: 61 TDKGVSAVRQVISLKIRTPDEDLVNQLNSLLPNCIKVFAMRKVTGGFNSKIACDSRSYSY 120
Query: 178 LLPVFALDS 186
++P FA S
Sbjct: 121 VMPTFAFTS 129
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLH 406
N +L + G+ N+HNFT+ A+DPS +RYI F ++ ++F+K + GQSFMLH
Sbjct: 149 NSLLSVFKGTRNYHNFTSGRPAQDPSCKRYITQFSCGDPFMIKEVEFVKITIKGQSFMLH 208
Query: 407 QIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
QIRKMIGL ++V+R P+ +++ A + + +NVPTAP + L L+E + SYN+++
Sbjct: 209 QIRKMIGLTISVMRGFVPREILDKAFKME-RVNVPTAPSLNLLLEEPHYDSYNRRY 263
>gi|242003078|ref|XP_002422603.1| tRNA pseudouridine synthase A, putative [Pediculus humanus
corporis]
gi|212505404|gb|EEB09865.1| tRNA pseudouridine synthase A, putative [Pediculus humanus
corporis]
Length = 410
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLH 406
N IL Y+G+H FHNFT++ DPSA+RYI+SF A+ +F+ +V GQSFMLH
Sbjct: 219 NEILSQYLGTHPFHNFTSKKDGRDPSAKRYIMSFEAEEPFLENEEEFITLKVKGQSFMLH 278
Query: 407 QIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
QIRKM+G +AV++ A ++ I++ + + +++P AP +GL L++ + YNKK+
Sbjct: 279 QIRKMVGYTIAVMKGFASEA-IQSKIWTNEKVSLPMAPGLGLVLEDVHYDKYNKKF 333
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 21 EPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNP 80
EP KRL T + E DL D K ++R +A+ AY G Y GMQKN
Sbjct: 49 EPQSKRL-----CTENIENDL------NDQKLK---IRKRNVALLMAYNGSNYHGMQKNL 94
Query: 81 GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGL 140
KTIE +L AL + + N + R+ARTDKGVSA QVVS F I
Sbjct: 95 DFKTIEYELLNALVKANLIPSEAIDNLPLIHFQRAARTDKGVSAAKQVVS--FKIAENFQ 152
Query: 141 VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSH 189
VE++N LP IR+F KRVT FN K C R Y Y LP FAL H
Sbjct: 153 VEKINMFLPEDIRVFSIKRVTKGFNCKNQCTARTYSYTLPTFALAPEFH 201
>gi|301605366|ref|XP_002932295.1| PREDICTED: tRNA pseudouridine synthase A-like [Xenopus (Silurana)
tropicalis]
Length = 394
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 78/132 (59%), Gaps = 9/132 (6%)
Query: 59 RRKIAIFFAYCGVGYQGMQKN---PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RK AI AYCG GY GMQ + P TIE L AL + + E ++ + R
Sbjct: 68 KRKFAIMLAYCGRGYYGMQMDLTRPNFPTIESALISALIQARCIPEMFYMQMKQLKFQRC 127
Query: 116 ARTDKGVSAVGQVVSGRF---CIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
ARTDKGVSA+ Q+VS R C +P VE++NS+LP +I I KRVT F KK CD+
Sbjct: 128 ARTDKGVSALSQLVSVRLLPSCSNP---VEKINSHLPPEILIIDMKRVTKGFCPKKMCDK 184
Query: 173 RRYVYLLPVFAL 184
R Y Y++P FAL
Sbjct: 185 RSYSYMVPTFAL 196
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 1/129 (0%)
Query: 334 SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDF 393
S F E+ N +L Y G+HNFHNFT+R EDPS+ R+++ G +F
Sbjct: 206 SNFRMPREDFHNINNLLSFYKGTHNFHNFTSRKAFEDPSSFRHMLDVSCSEPFVFHGTEF 265
Query: 394 LKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDEC 453
+ + GQSFML+QIRKM+GL +A+ + P + +Q++ IN+P AP +GL L+
Sbjct: 266 AQIHITGQSFMLYQIRKMVGLIIAIAQGIVPADFLPQCMQRE-KINIPPAPGLGLVLERV 324
Query: 454 IFASYNKKW 462
F YNK++
Sbjct: 325 HFDWYNKRY 333
>gi|239735631|gb|ACS12725.1| MIP10620p [Drosophila melanogaster]
Length = 341
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 4/128 (3%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
KR+K AI +YCG Y GMQ+NPG +TIE +L +A+ ++E + + R+AR
Sbjct: 125 KRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAAR 184
Query: 118 TDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
TDKGVSA QV S + P L +E N++LP QIR+FG +RVT FNAK C+ R Y
Sbjct: 185 TDKGVSAARQVCSVKL---PEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNARTYT 241
Query: 177 YLLPVFAL 184
Y LP A
Sbjct: 242 YTLPTVAF 249
>gi|427789583|gb|JAA60243.1| Putative trna pseudouridine synthase a mitochondrial [Rhipicephalus
pulchellus]
Length = 442
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 87/166 (52%), Gaps = 18/166 (10%)
Query: 21 EPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNP 80
E D KRLK + T DL+ A A +K+A+ Y G Y GMQ+NP
Sbjct: 47 EKDAKRLK---SDTETQNADLLKAKA-------------KKMALCMCYSGKDYLGMQRNP 90
Query: 81 GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFC--IDPP 138
G KTIE DL AL+ + P+ + R+ARTDKGVSAV QVVS + I
Sbjct: 91 GTKTIEEDLLTALYKGQLIQREHIEIPQNVKFQRAARTDKGVSAVRQVVSLKLPTNISID 150
Query: 139 GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+V R+NS+L QIR+ KR T FN K CD R Y Y+LP F+
Sbjct: 151 EMVTRINSHLVDQIRVIDIKRTTRGFNCKNNCDSRTYSYMLPSFSF 196
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E + N++L Y G HN+HNFT+ K+EDPSA R++IS I+FL+ + G
Sbjct: 212 ERIEEVNKVLALYKGCHNYHNFTSGKKSEDPSAMRFMISAECGQPFIQGDIEFLQIRIKG 271
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFMLHQIRKM+GL +A++R QS I A + +++P AP +GL L+ + YNK
Sbjct: 272 QSFMLHQIRKMVGLVIAIMRGHTDQSTIRRAWGPE-RLDIPIAPPLGLMLEHLHYDRYNK 330
Query: 461 KW 462
++
Sbjct: 331 RY 332
>gi|395332022|gb|EJF64402.1| tRNA pseudouridine synthase [Dichomitus squalens LYAD-421 SS1]
Length = 563
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 79/146 (54%), Gaps = 5/146 (3%)
Query: 44 AAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAK--TIEGDLEEALFHSGAVSE 101
A D K +R+ A+ +CG GY GMQ P K TIEG L +AL GAVS+
Sbjct: 111 APTTEDGEPKAPRLPKRQCALLIGFCGDGYNGMQIQPDPKLRTIEGVLFDALIKVGAVSK 170
Query: 102 RDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG---LVERLNSNLPTQIRIFGYK 158
+ NP + R+ARTD GV A G VVS + PG LV R+N LP +IR++
Sbjct: 171 DNSDNPTKVKLGRAARTDAGVHAAGNVVSMKLINVIPGVPDLVARINEELPPEIRLWSIL 230
Query: 159 RVTASFNAKKFCDQRRYVYLLPVFAL 184
RV SFNA+ CD R+Y Y P + +
Sbjct: 231 RVQNSFNARTTCDSRKYTYFFPSYLM 256
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 2/141 (1%)
Query: 321 ERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF 380
E+ + ++ L + + E+ + GSHNFHNFT D S +R++ S
Sbjct: 288 EQQASPQDDLRRKRAYRIAPEQLASLREAATKFEGSHNFHNFTVGRDFRDRSCQRFLRSI 347
Query: 381 GADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINV 440
+++ + GQSFMLHQ RKMI V R P LIE + + +
Sbjct: 348 EILDPAVYGDTEWIAVLLHGQSFMLHQ-RKMISALVLSCRTGTPPHLIEE-MYGPRQVFI 405
Query: 441 PTAPEVGLYLDECIFASYNKK 461
P P +GL L+ IF SY+K+
Sbjct: 406 PKMPALGLLLEYPIFESYSKR 426
>gi|302417130|ref|XP_003006396.1| tRNA pseudouridine synthase [Verticillium albo-atrum VaMs.102]
gi|261353998|gb|EEY16426.1| tRNA pseudouridine synthase [Verticillium albo-atrum VaMs.102]
Length = 439
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
Query: 71 VGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS 130
GY G+Q N KTIEGDL +A +GA+S+ + +P++ +R ARTDKGV A G ++S
Sbjct: 54 TGYYGLQINWDEKTIEGDLFKAFIAAGAISKANADDPKKSSLSRCARTDKGVHAAGNLIS 113
Query: 131 GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHR 190
+ I+ +V+++N++LP QIR++G +R + SF+A + CD R Y YLLP + L SH
Sbjct: 114 LKLIIEDDDIVDKINAHLPDQIRVWGLQRTSNSFSAYQACDSRWYEYLLPTYCL-LPSHP 172
Query: 191 D 191
D
Sbjct: 173 D 173
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVGQSFMLHQI 408
L YVG++NFHN+T + +DPSA+R+I SF + + + ++ +V GQSFM+HQI
Sbjct: 317 LDQYVGTYNFHNYTIQKSFKDPSAKRHIKSFQVNKTPIQIRDTQWVSIKVHGQSFMMHQI 376
Query: 409 RKMIGLAVAV 418
RKMI +A V
Sbjct: 377 RKMISMATLV 386
>gi|328850113|gb|EGF99282.1| hypothetical protein MELLADRAFT_45767 [Melampsora larici-populina
98AG31]
Length = 615
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 26/165 (15%)
Query: 46 AGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRG 105
G S +K + +RK+A+ Y G GYQG Q NPG KTIEG++ +A +G VSE +
Sbjct: 114 TGHPSGSKEKRLPKRKVAVLLGYYGKGYQGSQVNPGMKTIEGEVFKAFVKAGCVSEDNSA 173
Query: 106 NPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVE----------------------- 142
+P + R+ARTD V A ++ + +DPP L E
Sbjct: 174 HPNKVGLQRAARTDANVHAGCNLICLKLILDPPSLKESSDITAESSETKTCGDPEHHSLP 233
Query: 143 ---RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+NS LP +IR++G +RV SF+A+ CD R Y Y LP +
Sbjct: 234 LMKHINSFLPEEIRLWGLERVQNSFHARTLCDSRTYEYSLPTYLF 278
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEG-------IDFLKC 396
+R + ++ + G+HNFHNFT + +D SA R I V G +++
Sbjct: 358 QRLKQSVQKFKGTHNFHNFTVGKEFKDRSAIRIIREMTVSDPFVVGGESEGDPATEWISV 417
Query: 397 EVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFA 456
+ GQSFMLHQIRKMIGL + + R P +LI L V + +P AP +GL L F
Sbjct: 418 KFYGQSFMLHQIRKMIGLIILLCRTRTPCTLI-PELYGPVRVRIPKAPGLGLILHHPHFD 476
Query: 457 SYNKK 461
YNK+
Sbjct: 477 GYNKR 481
>gi|449548175|gb|EMD39142.1| hypothetical protein CERSUDRAFT_81905 [Ceriporiopsis subvermispora
B]
Length = 427
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 67 AYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSA 124
+CG GY GMQ PG KTIEG L AL GAVS+ + NP + + R+ARTD GV A
Sbjct: 2 GFCGAGYNGMQIQTEPGIKTIEGTLFNALVKVGAVSKDNADNPTKVNLGRAARTDAGVHA 61
Query: 125 VGQVVSGRFCIDPPG---LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPV 181
G +VS + PG V R+N LP +IR++G RV SFNA+ CD R+Y Y P
Sbjct: 62 AGNLVSMKVITAIPGVDDFVGRVNEELPPEIRLWGVVRVQKSFNARTSCDSRKYTYYFPS 121
Query: 182 FAL 184
+ L
Sbjct: 122 YLL 124
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 327 EEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVV 386
E L F E+ + K + G+HNFHNFT D S +R++ V
Sbjct: 160 ENDLAAKRAFRASPEQVQALRETAKKFEGTHNFHNFTVGRDFSDRSTQRHMKLIEIADPV 219
Query: 387 NVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEV 446
+++ GQSFMLHQ+RKM+ V R P +IE L + +P P +
Sbjct: 220 VYGSTEWISVLFHGQSFMLHQLRKMMSALVLTCRTGTPPQIIE-ELYGPRMVFIPKMPAL 278
Query: 447 GLYLDECIFASYNKK 461
GL L+ IF +YN++
Sbjct: 279 GLLLEYPIFDTYNRR 293
>gi|195498243|ref|XP_002096440.1| GE25055 [Drosophila yakuba]
gi|194182541|gb|EDW96152.1| GE25055 [Drosophila yakuba]
Length = 410
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 78/131 (59%), Gaps = 4/131 (3%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
KR+K AI +YCG + GMQ+NPG +TIE +L + + ++E + + R+A
Sbjct: 67 IKRKKSAILLSYCGANFYGMQRNPGMQTIEEELFKVMLKHKWITEESFEQIQISCFQRAA 126
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
RTDKGVSA QV S + P L +E N++LP QIR+FG +RVT FNAK C+ R Y
Sbjct: 127 RTDKGVSAARQVCSVKL---PEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNARTY 183
Query: 176 VYLLPVFALDS 186
Y LP A S
Sbjct: 184 TYTLPTVAFAS 194
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 80/120 (66%), Gaps = 2/120 (1%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF-GADSVVNVEGIDFLKCEVVGQS 402
++ LK Y G+ NFHNFT++ DPS++R+I+SF ++ + +GI+F+ V GQS
Sbjct: 214 QKVKETLKLYEGTKNFHNFTSKKSFLDPSSKRFIMSFTSSEPFRSPQGIEFVTLNVKGQS 273
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
FMLHQIRKM+GLA+A+VR + +E AL ++ +++P AP +GL LD + YN ++
Sbjct: 274 FMLHQIRKMVGLAIAIVRGNTTAATLERALTEE-RLDLPMAPGLGLVLDTVHYERYNDRY 332
>gi|195055095|ref|XP_001994456.1| GH16145 [Drosophila grimshawi]
gi|193892219|gb|EDV91085.1| GH16145 [Drosophila grimshawi]
Length = 395
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 79/114 (69%), Gaps = 2/114 (1%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNV-EGIDFLKCEVVGQSFMLHQI 408
LK Y G+ NFHNFT++ DPSA+R+I+SF + + + +GI+F+ +V GQSFMLHQI
Sbjct: 209 LKLYEGTKNFHNFTSKKNFLDPSAKRFIMSFTSSAPFHSPQGIEFVTLQVKGQSFMLHQI 268
Query: 409 RKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
RKM+GLA+A+VR + +E AL ++ +++P AP +GL LD + YN ++
Sbjct: 269 RKMVGLAIAIVRGNTTRITLERALTEE-RLDLPMAPGLGLVLDTVHYERYNDRY 321
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
KR+K AI +YCG Y GMQ+NPG +TIE +L +A+ ++E + + R+AR
Sbjct: 56 KRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHNWITEDSFKQVQIASFQRAAR 115
Query: 118 TDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
TDKGVSA QV S + D LV N +LP IR+FG +RVT FNAK+ C+ R Y Y
Sbjct: 116 TDKGVSAARQVCSIKLP-DELDLVA-FNKDLPETIRLFGVERVTKGFNAKEQCNARTYTY 173
Query: 178 LLPVFAL 184
LP A
Sbjct: 174 TLPSIAF 180
>gi|383863471|ref|XP_003707204.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Megachile rotundata]
Length = 399
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 76/132 (57%), Gaps = 6/132 (4%)
Query: 55 QLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
Q KR+ I Y G Y GMQ N G KTIE L AL + +++ + R + R
Sbjct: 45 QKVKRKNFVIMMGYLGGNYFGMQINRGTKTIEESLLTALLEANYITKDQFEDIREIRFQR 104
Query: 115 SARTDKGVSAVGQVVSGRFCIDPPGLV--ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
+ARTDKGVSAV Q+VS + P V E +N +LP IR+FG KRVT FN+K CD
Sbjct: 105 AARTDKGVSAVRQIVSLKL----PHNVNKEDINKHLPKDIRVFGVKRVTKGFNSKNQCDA 160
Query: 173 RRYVYLLPVFAL 184
R Y Y+LP FAL
Sbjct: 161 RTYRYVLPTFAL 172
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFML 405
N LK G+HNFHNFT+RTKA DP RRYII F V ++F EV GQSFML
Sbjct: 218 LNETLKLLEGTHNFHNFTSRTKALDPRNRRYIIYFRCIETFIVNDMEFAVLEVKGQSFML 277
Query: 406 HQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
HQIRKM+ L + + RN ++ A K+ ++PTAP +GL L + Y++++
Sbjct: 278 HQIRKMVTLVIGISRNILKNDFLKEAFSKE-KYSIPTAPGLGLSLHFVHYKYYDERY 333
>gi|452823736|gb|EME30744.1| tRNA pseudouridine synthase A [Galdieria sulphuraria]
Length = 641
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 103/433 (23%), Positives = 179/433 (41%), Gaps = 98/433 (22%)
Query: 59 RRKIAIFFAYCGVGYQGMQKN--PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+R I ++ Y G Y G+Q N G KTIE ++E AL+ G + E++ ++ W+R++
Sbjct: 108 KRMICLYIGYVGTDYYGLQVNRQEGIKTIEEEIERALYSCGWIGEQNFRRVQKISWSRAS 167
Query: 117 RTDKGVSAVGQVVSGR-------FCID---------------------------PPGLVE 142
RTDKGV A G V++ + F +D ++E
Sbjct: 168 RTDKGVHACGNVIALKALLKEQWFELDSNFEKTKQNTRTKNNSDELAFSSLGSLKKDVLE 227
Query: 143 RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSG 202
+LN NLP IRI G + VT F+A+ C+ R Y YL+P+ A+ +S E++ ++
Sbjct: 228 QLNRNLPDSIRILGVQPVTKHFDARSRCNFRAYEYLMPLEAIPGAS----ENIEQAICRL 283
Query: 203 NELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNL 262
E++ + + R + GL + + A+ + G
Sbjct: 284 EEILSLFKGTHRF---------HNFSSGLRAAHKKAN-----------ARLEGSDPGEEF 323
Query: 263 ESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEER 322
+V S + S +E N E N N + S+ +ND + + +
Sbjct: 324 TTVRSEQVSSTEADIEERNIEDAN---------------NKEQSMKKYEENDEIDIEDNQ 368
Query: 323 SVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGA 382
+ + L K +++ + H+ H R K ++ YI
Sbjct: 369 EMQFSDYLCK----------------VIRQW-PEHSSH----RLKRQEYIRSVYIADI-- 405
Query: 383 DSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPT 442
+ + ++G +++ GQSF+LHQIRKMIG A++V+ ++ AL + +
Sbjct: 406 EGPLEIQGRNYVLLRFAGQSFILHQIRKMIGGALSVMYGRLSMEALKVALYGPFQVPISL 465
Query: 443 APEVGLYLDECIF 455
AP L L C F
Sbjct: 466 APSEPLMLVLCDF 478
>gi|323331140|gb|EGA72558.1| Pus1p [Saccharomyces cerevisiae AWRI796]
Length = 465
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 74/118 (62%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
YCG GY GMQ NP TIE L +A +GA+S+ + + ++ + R+ARTDKGV A G
Sbjct: 3 GYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTDKGVHAGG 62
Query: 127 QVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
++S + I+ P + +++N LP IR++ +RV +F+ +K C R Y YLLP ++L
Sbjct: 63 NLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWYEYLLPTYSL 120
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
+F Y+G+HNFHNFT ++PSA R++ I V+ +++ ++ GQS
Sbjct: 217 KFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHGQS 276
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FMLHQIRKM+ +A + R P I A + IN+P AP +GL L+ +F YNK+
Sbjct: 277 FMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEAPVFEGYNKR 334
>gi|325190643|emb|CCA25138.1| ubiquitin fusion degradation protein putative [Albugo laibachii
Nc14]
Length = 585
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 78/139 (56%), Gaps = 10/139 (7%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+R++AI Y G Y G+Q NP TIE ++ +A++H GA+ + + + DW+RS+RT
Sbjct: 77 KRRVAIVAGYNGSDYHGVQLNPNVPTIEDEIRKAMYHIGALRASNFQDLNKIDWSRSSRT 136
Query: 119 DKGVSAVGQVVSGRF-----CIDPP-----GLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
DKGV A V +G+ IDP GL LN NLP IRIF RV SFNA+
Sbjct: 137 DKGVHASTIVFAGKLLLNEDVIDPVTGRVRGLTRALNENLPPNIRIFSVTRVCNSFNART 196
Query: 169 FCDQRRYVYLLPVFALDSS 187
C R Y Y LP+ L +S
Sbjct: 197 ECALREYEYFLPLAFLSAS 215
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 371 PSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIET 430
P RR + + + G ++K + GQ+F+LHQIR MIG A++ + ++ E
Sbjct: 307 PRHRRAVYQCRGSLIEDFYGEPYVKVHITGQAFLLHQIRCMIGGAISFATDAISSTVFEA 366
Query: 431 ALQKDVNINVPTAPEVGLYL 450
+L D + +P AP GL L
Sbjct: 367 SLYTDQIVRIPIAPAEGLLL 386
>gi|353242840|emb|CCA74448.1| related to PUS1-pseudouridine synthase 1 [Piriformospora indica DSM
11827]
Length = 581
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 50 STTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRR 109
+ +K +L +R+ A+ +CG GY GMQ AKTIEG L AL GAVSE + + +
Sbjct: 143 TPSKPRLGPKRQCAMLIGFCGTGYSGMQIQKDAKTIEGSLFSALVKVGAVSEDNSDDATK 202
Query: 110 YDWARSARTDKGVSAVGQVVSGRFCIDPPG---LVERLNSNLPTQIRIFGYKRVTASFNA 166
+ R+ARTD GV A VVS + +D PG LV +NSNLP +IR++ R SFN+
Sbjct: 203 VNIQRAARTDAGVHAARNVVSIKIIMDVPGVPNLVAAINSNLPEEIRVWDIVRTQNSFNS 262
Query: 167 KKFCDQRRYVYLLPVFAL 184
+ R+Y Y LP + L
Sbjct: 263 R----TRKYTYFLPTYML 276
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVV 399
E+ RF L ++G+HNF NFT + ++ +A+R+I + +++ ++
Sbjct: 330 EDTLNRFKAALNTFIGTHNFWNFTVGREYKEAAAKRHIKTIEVSEPAIYGETEWVSVQIH 389
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
GQSFMLHQ RKMI LA + R+ SL++ L +P AP +GL L+E +F SYN
Sbjct: 390 GQSFMLHQ-RKMIALATFLTRSQGDASLVQN-LYTSSRARIPKAPALGLLLEEPVFESYN 447
Query: 460 K-------KWKDS 465
K KWKD+
Sbjct: 448 KKIETANSKWKDA 460
>gi|294949997|ref|XP_002786409.1| tRNA pseudouridine synthase A, putative [Perkinsus marinus ATCC
50983]
gi|239900701|gb|EER18205.1| tRNA pseudouridine synthase A, putative [Perkinsus marinus ATCC
50983]
Length = 427
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 339 GEEEKKRFNRILKHYVGSH-NFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCE 397
G+ + + ++ YVG + NF NFT + AEDPSA+R+IIS ++ F++ +
Sbjct: 226 GKADAAKLEEVMSQYVGKNKNFFNFTAKIPAEDPSAKRHIISITCQPT-EIDANTFIRIQ 284
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFAS 457
+VGQSF+LHQIRKMIGLAV V R AP+ IE L ++ AP GL+LD F
Sbjct: 285 LVGQSFLLHQIRKMIGLAVEVCRGSAPEGAIEECLAAKERKHIHLAPAEGLFLDRVYFDC 344
Query: 458 YN 459
YN
Sbjct: 345 YN 346
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 28/169 (16%)
Query: 64 IFFAYCGVGYQGMQKNPGAK------TIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+ Y G G +GMQ K TIEG ++AL + +E + ++ ++R+AR
Sbjct: 77 VALGYSGEGLKGMQIQTNEKGEEIHSTIEGIFQKALLATNLSTEEILADKKKLKFSRAAR 136
Query: 118 TDKGVSAV--------------------GQVVSGRFCIDPPGLVERLNSNL-PTQIRIFG 156
TDKGV A G + D V+ LN L P +++FG
Sbjct: 137 TDKGVHAALNILALALPVTLDKTLPQGEGDATRNVWTFDEKKNVKALNDFLEPLNMQVFG 196
Query: 157 YKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDR-ESVMASLGSGNE 204
+RV+ F+A+K C++RRY YLLP FALD + + E VM+ N+
Sbjct: 197 IQRVSNKFDARKQCERRRYEYLLPEFALDGKADAAKLEEVMSQYVGKNK 245
>gi|350416759|ref|XP_003491089.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Bombus impatiens]
Length = 399
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 84/155 (54%), Gaps = 10/155 (6%)
Query: 36 DDERDLIPAAAGADST----TKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEE 91
D+ ++I A + T ++ KR+ I +Y G Y GMQ N G KTIE L
Sbjct: 22 DESYEMITKAPKVEPTEDVVQRKNNVKRKNFVIMLSYVGKNYCGMQINRGRKTIEESLLS 81
Query: 92 ALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLV--ERLNSNLP 149
AL + +++ + R + R+ARTDKGVSAV QVVS + P V E +N LP
Sbjct: 82 ALLKANFITKEQFEDVREIKFQRAARTDKGVSAVRQVVSLQL----PDYVNKEDINQYLP 137
Query: 150 TQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
IR+F KRVT +FN+K CD R Y Y+LP F L
Sbjct: 138 KDIRVFDVKRVTRTFNSKTKCDARTYRYVLPTFVL 172
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
+ N ILK G+HNFHNFT++TK DP A+RYII F ++F E+ GQSFM
Sbjct: 217 KLNEILKLLEGTHNFHNFTSKTKPLDPRAKRYIIYFRCVETFIANNMEFAVLEIKGQSFM 276
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
LHQIRKM+ L + + RN +I+ + I++P AP +GL L + YN+K+
Sbjct: 277 LHQIRKMVSLVIGICRNIVTSDIIKDVFSVE-KIDIPIAPGLGLSLHFVHYEYYNEKF 333
>gi|428184744|gb|EKX53598.1| hypothetical protein GUITHDRAFT_132703 [Guillardia theta CCMP2712]
Length = 355
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 74/110 (67%), Gaps = 1/110 (0%)
Query: 78 KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDP 137
+NPG TIEG+LE AL S +S+ + G+ ++ W R+ARTDKGV A+G VV + I+P
Sbjct: 48 RNPGQSTIEGELERALHDSKFISDLNFGHQKKVHWNRAARTDKGVHALGNVVGLKLLINP 107
Query: 138 P-GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDS 186
+VE +N +LP+ IR+ KRVT SF+A++ + R+Y YL+P F +S
Sbjct: 108 DVDMVEEVNKHLPSDIRVLDIKRVTKSFHAQQLANGRQYHYLIPTFVFES 157
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 6/106 (5%)
Query: 355 GSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGL 414
G+H+FHNFT+ K D A+RYI+SF V +G ++L+ V GQSF+LHQ + + +
Sbjct: 202 GTHSFHNFTSGKKKGDADAKRYIVSFKVGERVIFDGYEYLELRVEGQSFLLHQCDRDVVM 261
Query: 415 AVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
+ R C +L +Q +++P P VGL+L++ ++ +YNK
Sbjct: 262 EMG--RTCIFDNLYICRVQ----VHIPLVPGVGLFLNKVLYRTYNK 301
>gi|76156463|gb|ABA40375.1| SJCHGC06804 protein [Schistosoma japonicum]
Length = 334
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 76/129 (58%), Gaps = 1/129 (0%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
KRR AI Y G GY GMQ+ P TIEG+L +ALF G + ++ ++ R+++
Sbjct: 45 KRRNNAILMMYSGWGYYGMQRGPIYPTIEGELSKALFTCGQLVNVTSEEHKKVNFQRASK 104
Query: 118 TDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
TDK VSA+GQV S + D L+ +LN+ LP IRI RVT SF++ C R Y Y
Sbjct: 105 TDKYVSALGQVCSLKL-YDDADLLNKLNTALPQDIRILDIIRVTRSFSSYNSCTHRVYDY 163
Query: 178 LLPVFALDS 186
LLP FAL S
Sbjct: 164 LLPTFALSS 172
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 75/124 (60%), Gaps = 1/124 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E+ + N +L+ Y G+HNF+NFT+ D S R+I S + ++ ++G
Sbjct: 190 EKITKLNNLLERYKGTHNFYNFTSGRLPTDKSCYRHIKSVECIPTFLLGEHEYTVIRIIG 249
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFMLHQ+RKMIGL + ++R A + + + K+ +++P AP +GL L++ F+ YNK
Sbjct: 250 QSFMLHQVRKMIGLVLGILRGYATEDVFDIVFCKE-RVDIPKAPGLGLMLNQVDFSYYNK 308
Query: 461 KWKD 464
K+++
Sbjct: 309 KYQN 312
>gi|290987319|ref|XP_002676370.1| predicted protein [Naegleria gruberi]
gi|284089972|gb|EFC43626.1| predicted protein [Naegleria gruberi]
Length = 477
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 60 RKIAIFFAYCGVGYQGMQK----NPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
R++AIF Y G Y G Q NP KT+E + +AL +G VS + + + + RS
Sbjct: 116 RRVAIFIGYLGTNYNGSQTSNFTNPNVKTVEETVFKALCQAGGVSGDNSTDMNKVHFHRS 175
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
+RTDKGV A V+ + + P GL E + LP I +GYK+V+ SFNAK+ C R Y
Sbjct: 176 SRTDKGVHAASNVLEMKLLMKP-GLEEEMRKLLPEDIVFYGYKKVSKSFNAKEHCTARTY 234
Query: 176 VYLLPVFAL 184
YLLP FAL
Sbjct: 235 EYLLPAFAL 243
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 76/122 (62%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVV 399
+E+ ++ NR+LK++VG+++FHN+T TKA+ S R+I F ++G+ +K V
Sbjct: 281 DEQIEKANRVLKNFVGTNSFHNYTQLTKAKPNSFNRHITKFECSKAFEIDGMKVVKLTVT 340
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
G SF+ +QIRKM+G +AV+R +S T++ K+V NVP AP GL L E F YN
Sbjct: 341 GSSFIYNQIRKMVGFMIAVMRGSLNESDFSTSVDKEVTANVPLAPANGLLLCEQEFKRYN 400
Query: 460 KK 461
K
Sbjct: 401 AK 402
>gi|68487205|ref|XP_712546.1| hypothetical protein CaO19.10981 [Candida albicans SC5314]
gi|68487266|ref|XP_712516.1| hypothetical protein CaO19.3477 [Candida albicans SC5314]
gi|74679680|sp|Q59S63.1|PUS1_CANAL RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|46433909|gb|EAK93335.1| hypothetical protein CaO19.3477 [Candida albicans SC5314]
gi|46433941|gb|EAK93366.1| hypothetical protein CaO19.10981 [Candida albicans SC5314]
Length = 450
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
+ F ++K Y G+HNFHNFT +D SA R++I +EG +++ ++ GQSF
Sbjct: 224 QHFREVMKQYEGTHNFHNFTVGKPFKDTSANRFMIKTIVSDPFVIEGTEWISIKIHGQSF 283
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWK 463
MLHQIRKMI +A VVR P +I Q IN+P AP +GL L+ +F YN K
Sbjct: 284 MLHQIRKMIAMAALVVRLSLPCGIINNFFQ-STKINIPKAPALGLLLENPVFDGYNIKLT 342
Query: 464 DSHEE 468
S E
Sbjct: 343 KSDYE 347
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 108 RRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
++ + R+ARTDKGV A G V+S + I+ P ++ ++N LP QIRI+G +R T F+ +
Sbjct: 37 KKSGFQRAARTDKGVHAAGNVISLKMIIEDPEIINKINDLLPKQIRIWGIQRATKGFDCR 96
Query: 168 KFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNEL 205
K C R Y YLLP F+L + SV++ L EL
Sbjct: 97 KCCSSRIYEYLLPTFSLLPPKPK---SVLSELVKEKEL 131
>gi|402223576|gb|EJU03640.1| tRNA pseudouridine synthase [Dacryopinax sp. DJM-731 SS1]
Length = 357
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ +CG G GMQ NP +TIEG L +AL +G VS + +P + +R+ART
Sbjct: 90 KRKVALLIGFCGTGCHGMQYNPPHRTIEGILFDALVKAGCVSADNADDPTKVALSRAART 149
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERL---NSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
D GV A G +VS + +P G+ + + N +LP ++R++G R +F A+ CD R Y
Sbjct: 150 DTGVHAAGNLVSMKIIREPEGVADVMRAVNVHLPPEVRLWGIVRTANNFMARTSCDSRVY 209
Query: 176 VYLLPVFAL 184
YL P + L
Sbjct: 210 EYLFPSYML 218
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 328 EKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVN 387
++L + + G EE R ++K + G+HNF N+T + ++ + +RY++S
Sbjct: 260 DELQRKRAWRVGLEEMTRLGELIKVFEGTHNFWNYTVGKEFKEKTVKRYMMSLEVRDPQV 319
Query: 388 VEGIDFLKCEVVGQSFMLHQI 408
V ++++ + GQSFMLHQI
Sbjct: 320 VGDMEWISVKFHGQSFMLHQI 340
>gi|328780691|ref|XP_624092.3| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Apis
mellifera]
Length = 389
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 88/153 (57%), Gaps = 6/153 (3%)
Query: 36 DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFH 95
D+ +++ A D K+ K++K + Y G Y GMQ N G KTIEG L AL
Sbjct: 23 DESSEIVAKAPKLDIIEKKNNIKKKKFVMVLGYLGKNYSGMQINRGIKTIEGSLLSALLK 82
Query: 96 SGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLV--ERLNSNLPTQIR 153
+ +++ + + + + R+ARTDKGVSAV Q+VS + P V E +N +LP I+
Sbjct: 83 ADFITKNEFEDLKEIKFQRAARTDKGVSAVRQIVS----LQLPNHVNKEDINKHLPKDIK 138
Query: 154 IFGYKRVTASFNAKKFCDQRRYVYLLPVFALDS 186
+F KRVT +FN+K CD R Y Y+LP FAL S
Sbjct: 139 VFDIKRVTRNFNSKNKCDARTYRYVLPTFALAS 171
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
+ N ILK + G+HNFHNFT++ + DP A+RYI+ F ++F+ EV GQSFM
Sbjct: 214 KLNEILKLFEGTHNFHNFTSKIRPMDPRAKRYIVYFRCIETFIANNMEFVVLEVQGQSFM 273
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW-K 463
LHQIRKM+ L + + RN ++ A + +++P AP +GL L + YN+++ K
Sbjct: 274 LHQIRKMVSLIIGICRNIITIDFVKDAFSLE-KVDIPIAPGLGLSLHFVHYTYYNERYGK 332
Query: 464 DSHEE 468
D E
Sbjct: 333 DGFHE 337
>gi|56693277|ref|NP_001008603.1| tRNA pseudouridine synthase A [Danio rerio]
gi|56269412|gb|AAH86827.1| Pseudouridine synthase 1 [Danio rerio]
Length = 376
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 89/160 (55%), Gaps = 4/160 (2%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNP---GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
++K+A+ AY G GY GMQ+N KTIE +L AL + + E ++ + RS
Sbjct: 39 KKKVALLMAYSGKGYYGMQRNARNSQFKTIEDELVTALVGARCIPEGHAEEMKKMSFQRS 98
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
ARTDKGVSAVG+VVS + + ++E++N++LP +IR+ G KRVT FN+K C R Y
Sbjct: 99 ARTDKGVSAVGRVVSLKVWM-IENILEKINAHLPPRIRVLGCKRVTGGFNSKNNCYARTY 157
Query: 176 VYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERG 215
Y+LP A + ++ + V L C +G
Sbjct: 158 SYMLPTVAFSPKDYNQEDTSFRLTSDTLQTVNRLFCLYKG 197
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLH 406
NR+ Y G+HNFHNFT++ DPSA RYI + ++F V GQSFM+H
Sbjct: 189 NRLFCLYKGTHNFHNFTSQKGHRDPSAMRYITHMSCGEPFIRKDVEFAVITVRGQSFMMH 248
Query: 407 QIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
QIRKMIGL +AVV+ + ++E + ++ + V AP +GL L+ F YNK++
Sbjct: 249 QIRKMIGLVIAVVKGYVDEGVMEKSWGEE-KVGVSKAPGLGLVLERVHFDGYNKRF 303
>gi|384496829|gb|EIE87320.1| hypothetical protein RO3G_12031 [Rhizopus delemar RA 99-880]
Length = 442
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 94/178 (52%), Gaps = 5/178 (2%)
Query: 284 SVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEK 343
++ E +V T E Q DL L + + + V RS E + K F +E+
Sbjct: 182 ALMEPIVAELTDE--QLFPNDLILTNNDRENPIVKYARRST--PEVIAKRHAFRASKEQL 237
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
++F +K + GSHNFHN+T +D SARRYI + + +++ ++ GQSF
Sbjct: 238 QKFTEAMKAFEGSHNFHNYTLGKGYKDKSARRYIKGITVGEPIYIHDTEWISIKLHGQSF 297
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
MLHQIRKMI + + + R P SLI+ + IN+P AP +GL L+ +F YN+K
Sbjct: 298 MLHQIRKMISMGMLIARTHTPISLIQETFGEK-RINIPKAPALGLLLERPVFDVYNEK 354
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 22/136 (16%)
Query: 49 DSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPR 108
D + ++K+A+ + G GYQGMQ NP +KTIEG + EAL +G VS+ + +P+
Sbjct: 70 DQGPREPRVPKKKVALLVGFNGTGYQGMQLNPNSKTIEGAIFEALCKAGGVSKDNASDPK 129
Query: 109 RYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
+ + G + + +ER NS LP QIRI+GY V SF+AK
Sbjct: 130 KMQ-----------------IPGDYDV-----IERANSFLPEQIRIWGYVPVIGSFHAKT 167
Query: 169 FCDQRRYVYLLPVFAL 184
CD R Y YLLP AL
Sbjct: 168 LCDSRIYEYLLPTCAL 183
>gi|356499004|ref|XP_003518334.1| PREDICTED: putative tRNA pseudouridine synthase-like [Glycine max]
Length = 516
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 102/405 (25%), Positives = 169/405 (41%), Gaps = 70/405 (17%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPG---AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
++K+ + Y G ++G+Q T+E +LE A+F +G + + + G+ + W RS
Sbjct: 74 KKKVVMRVGYVGTDFRGLQMQRDEHRLSTVEKELETAIFTAGGMRDSNFGDLNKVKWGRS 133
Query: 116 ARTDKGVSAVGQVVSGRFCI-------DPPGLV--ERLNSNLPTQIRIFGYKRVTASFNA 166
+RTDKGV ++ +++ + I D G+V R+NS LP IR+F T F+
Sbjct: 134 SRTDKGVHSLATMIAFKMEIPENAWKGDDYGIVLANRINSYLPNTIRVFSILPSTKRFDP 193
Query: 167 KKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRT 226
++ C+ R+Y YLLP + SH ++ + + N ++ E E V K
Sbjct: 194 RRECNLRKYSYLLPAGIIGIQSHFSQDEIDFHISEFNSILNVFE-GEHPFHNYTVRSKYR 252
Query: 227 YQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVN 286
+ + + N ++ ++ ++ S C + + + S + + S E+ +
Sbjct: 253 KKYQVRQSSGNDVMSDRIGSSSLTSACESESEEGDDDDFVSGRPTTFSDKEESHKPPESS 312
Query: 287 ETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRF 346
E S L S+N S V+ + + Y +E R
Sbjct: 313 E------------------SNGLSSQNSSVVVR--------------AKWLYEPDETDRL 340
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVGQSFML 405
N SH F S + S G D + V++ G F ML
Sbjct: 341 N-------ASHFRKVFRC-------SCGKLETSLGYDYIEVHIWGDSF----------ML 376
Query: 406 HQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
HQIRKM+G AVAV RN P+ I +L K I +P AP L L
Sbjct: 377 HQIRKMVGTAVAVKRNLIPRDAILLSLSKFSRIVLPLAPPEVLIL 421
>gi|224000315|ref|XP_002289830.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975038|gb|EED93367.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 323
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%)
Query: 335 GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFL 394
G+ +++ +R LK + G+H FHN+T R +++ SA RYIISF + V+G +++
Sbjct: 186 GYRVNDDQMERLRSGLKVFEGTHTFHNYTRRLGSDNASASRYIISFAPLDPIVVDGTEWI 245
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454
++VGQSF+L+QIRKMI AV + R I+ +L+K + V AP GL+LD
Sbjct: 246 PVQIVGQSFLLNQIRKMISAAVDLARGTVTHEQIQQSLKKGSRMKVNVAPAQGLFLDRSY 305
Query: 455 FASYNKK 461
F YNK+
Sbjct: 306 FELYNKQ 312
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 16/152 (10%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
I ++ G Y G Q N T++ +E LF +G +S + G P +Y W+ SARTDKGV
Sbjct: 1 ILVSFLGTNYSGFQINSTQHTLQAAIELGLFKAGLISPSNFGWPSKYSWSNSARTDKGVH 60
Query: 124 AVGQVVSGR----FCIDPP-------GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
A QVVS + F D + E++N +LP IR+ +RVT +F A+ D+
Sbjct: 61 AAAQVVSMKGEMIFHSDTVSIEDQLNAMREKVNEHLPNDIRVLDIERVTRAFCARTNRDK 120
Query: 173 RRYVYLLPVFALDSSSHRDRESVMASLGSGNE 204
RY Y++P F S RE + + G+ E
Sbjct: 121 VRYQYMVPSFMFSS-----REEICCAFGNIGE 147
>gi|407039158|gb|EKE39487.1| tRNA pseudouridine synthase, putative [Entamoeba nuttalli P19]
Length = 403
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 78/124 (62%), Gaps = 2/124 (1%)
Query: 62 IAIFFAYCGVGYQG-MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+A+ F+Y G GY G M N KTIEG++E A++ + +SE ++ + ++ W+R ARTDK
Sbjct: 45 VAVIFSYVGRGYFGLMYLNNNPKTIEGEIENAMYKAKCISEDNKHDLKKVGWSRCARTDK 104
Query: 121 GVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
GVSA ++S + +D +ER+NS LP IRI +V+ SFNAK D R Y Y+ P
Sbjct: 105 GVSAANNLISLKMGLD-GNYIERINSFLPETIRIQDVVKVSHSFNAKTRVDSRTYEYIFP 163
Query: 181 VFAL 184
+A+
Sbjct: 164 SYAI 167
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 75/130 (57%), Gaps = 9/130 (6%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFT---TRTKAEDPSARRYIISFGADSVVNVEGIDFLKC 396
+E+ FN ++ +YV +HNF N+T TKA+ S RYIIS A +V G++ +
Sbjct: 185 QEDIDYFNSVISNYVKTHNFQNYTFNTKETKADSKSNNRYIISMSAQ-LVQRNGLNVITV 243
Query: 397 EVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVN-IN----VPTAPEVGLYLD 451
+ GQSFML QIR+MIG A+ + P + ++ IN +PTAP GL+LD
Sbjct: 244 SIHGQSFMLWQIRRMIGFAIVLTNFRLPIEQMNEIMKTSFTLINWRSVIPTAPAHGLFLD 303
Query: 452 ECIFASYNKK 461
+C F ++N++
Sbjct: 304 QCHFGNHNER 313
>gi|358060585|dbj|GAA93704.1| hypothetical protein E5Q_00349 [Mixia osmundae IAM 14324]
Length = 461
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 91/184 (49%), Gaps = 21/184 (11%)
Query: 8 TEKLPSP----SLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIA 63
T +P P S SP +EP+ KR ++++ P+ ST+ +RK+A
Sbjct: 2 TSDVPLPRRDKSASPVREPEAKRARIAS-----------PSEQPVASTSSPNKLPKRKVA 50
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
+ YCG GY G Q +TIEG E L +G +S+ + + + AR+ARTD GV
Sbjct: 51 LLVGYCGTGYYGSQIQSELRTIEGAFFEGLVKAGCISKDNAESASKVGLARTARTDAGVH 110
Query: 124 AVGQVVSGRFCIDPPGL------VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
A G + S + + P L VE +N +LP +R++ RVT FN + CD R Y Y
Sbjct: 111 AAGNLFSLKLILQPTTLASSDNIVEHINRHLPDHLRVWACPRVTGGFNPRSNCDSRWYNY 170
Query: 178 LLPV 181
LP
Sbjct: 171 TLPT 174
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIR 409
L Y+GSHNF NFT D SA+R + ++ +++ ++ GQSFMLHQIR
Sbjct: 232 LARYLGSHNFWNFTVGKDFRDRSAQRVMKQVIVSDPFLIDDAEWISIKLHGQSFMLHQIR 291
Query: 410 KMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
KMIGLA+ VR P +L+ I VP AP +GL L+ F +YN +
Sbjct: 292 KMIGLAILSVRTGTPSTLVLECFGPS-RIAVPKAPSLGLLLEYPEFNNYNSR 342
>gi|67481869|ref|XP_656284.1| tRNA pseudouridine synthase [Entamoeba histolytica HM-1:IMSS]
gi|56473473|gb|EAL50898.1| tRNA pseudouridine synthase, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449702618|gb|EMD43222.1| tRNA pseudouridine synthase, putative [Entamoeba histolytica KU27]
Length = 401
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 78/124 (62%), Gaps = 2/124 (1%)
Query: 62 IAIFFAYCGVGYQG-MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+A+ F+Y G GY G M N KTIEG++E A++ + +SE ++ + ++ W+R ARTDK
Sbjct: 43 VAVIFSYVGRGYFGLMYLNNNPKTIEGEIENAMYKAKCISEDNKHDLKKVGWSRCARTDK 102
Query: 121 GVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
GVSA ++S + +D +ER+NS LP IRI +V+ SFNAK D R Y Y+ P
Sbjct: 103 GVSAANNLISLKMGLD-GNYIERINSFLPETIRIQDVVKVSHSFNAKTRVDSRTYEYIFP 161
Query: 181 VFAL 184
+A+
Sbjct: 162 SYAI 165
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 75/130 (57%), Gaps = 9/130 (6%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFT---TRTKAEDPSARRYIISFGADSVVNVEGIDFLKC 396
+E+ FN ++ +YV +HNF N+T TKA+ S RYIIS A +V G++ +
Sbjct: 183 QEDIDYFNSVISNYVKTHNFQNYTFNTKETKADSKSNNRYIISMSA-QLVQRNGLNVIAV 241
Query: 397 EVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVN-IN----VPTAPEVGLYLD 451
+ GQSFML QIR+MIG A+ + P + ++ IN +PTAP GL+LD
Sbjct: 242 SIHGQSFMLWQIRRMIGFAIVLTNFRLPIEQMNEIMKTSFTLINWRSVIPTAPAHGLFLD 301
Query: 452 ECIFASYNKK 461
+C F ++N++
Sbjct: 302 QCHFGNHNER 311
>gi|167383737|ref|XP_001736651.1| tRNA pseudouridine synthase A [Entamoeba dispar SAW760]
gi|165900832|gb|EDR27064.1| tRNA pseudouridine synthase A, putative [Entamoeba dispar SAW760]
Length = 403
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 78/124 (62%), Gaps = 2/124 (1%)
Query: 62 IAIFFAYCGVGYQG-MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+A+ F+Y G GY G M N KTIEG++E A++ + +SE ++ + ++ W+R ARTDK
Sbjct: 45 VAVIFSYVGRGYFGLMYLNNNPKTIEGEIENAMYKAKCISEDNKHDLKKVGWSRCARTDK 104
Query: 121 GVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
GVSA ++S + +D +ER+NS LP IRI +V+ SFNAK D R Y Y+ P
Sbjct: 105 GVSAANNLISLKMGLD-GNYIERINSFLPETIRIQDVVKVSHSFNAKTRVDSRTYEYIFP 163
Query: 181 VFAL 184
+A+
Sbjct: 164 SYAI 167
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 75/130 (57%), Gaps = 9/130 (6%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFT---TRTKAEDPSARRYIISFGADSVVNVEGIDFLKC 396
+E+ FN ++ +YV +HNF N+T TKA+ S RYIIS A +V G++ +
Sbjct: 185 QEDVDYFNSVISNYVKTHNFQNYTFNTKETKADSKSNNRYIISMSA-QLVQRNGLNVIAV 243
Query: 397 EVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVN-IN----VPTAPEVGLYLD 451
+ GQSFML QIR+MIG A+ + P + ++ IN +PTAP GL+LD
Sbjct: 244 SIHGQSFMLWQIRRMIGFAIVLTNFRLPIEQMNEIMKTSFTLINWRSVIPTAPAHGLFLD 303
Query: 452 ECIFASYNKK 461
+C F ++N++
Sbjct: 304 QCHFGNHNER 313
>gi|1322568|emb|CAA96766.1| PUS2 [Saccharomyces cerevisiae]
Length = 370
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
+ YCG GY GMQ NP KTIEG++ LF GA+SE + P++ + +ARTDKGV
Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60
Query: 124 AVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
A+ ++S + + V +LN+ LP +IR++G + V FNA+ CD R Y YL+P F
Sbjct: 61 AMLNLLSLKITLR-EDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQYLIPEFI 119
Query: 184 L 184
L
Sbjct: 120 L 120
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 330 LLKG--SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVN 387
LL G SG+C + F ++ YVG+HNFHNFTT DPSA+R+I VV+
Sbjct: 185 LLSGTLSGYCLSPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSAQRHI----KKVVVS 240
Query: 388 VEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVG 447
++ + GQSFMLHQIR+M+ LAV R P +++ +P AP G
Sbjct: 241 QASPGWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQG 300
Query: 448 LYLDECIFASYNKKWKD 464
L L+ +F YN K ++
Sbjct: 301 LLLEGPVFDGYNTKLRN 317
>gi|349578160|dbj|GAA23326.1| K7_Pus2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 370
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
+ YCG GY GMQ NP KTIEG++ LF GA+SE + P++ + +ARTDKGV
Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60
Query: 124 AVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
A+ ++S + + V +LN+ LP +IR++G + V FNA+ CD R Y YL+P F
Sbjct: 61 AMLNLLSLKITLR-EDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQYLIPEFI 119
Query: 184 L 184
L
Sbjct: 120 L 120
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 330 LLKG--SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVN 387
LL G SG+C + F ++ YVG+HNFHNFTT DPSA+R+I VV+
Sbjct: 185 LLSGTLSGYCLPPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSAQRHI----KKVVVS 240
Query: 388 VEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVG 447
++ + GQSFMLHQIR+M+ LAV R P +++ +P AP G
Sbjct: 241 QASPGWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQG 300
Query: 448 LYLDECIFASYNKKWKD 464
L L+ +F YN K ++
Sbjct: 301 LLLEGPVFDGYNTKLRN 317
>gi|398364673|ref|NP_011452.4| pseudouridine synthase PUS2 [Saccharomyces cerevisiae S288c]
gi|347595823|sp|P53167.4|PUS2_YEAST RecName: Full=tRNA pseudouridine(27/28) synthase; AltName:
Full=tRNA pseudouridine synthase 2; AltName: Full=tRNA
pseudouridylate synthase 2; AltName: Full=tRNA-uridine
isomerase 2
gi|1403093|emb|CAA56699.1| pseudouridine synthase 2 [Saccharomyces cerevisiae]
gi|329138894|tpg|DAA08039.2| TPA: pseudouridine synthase PUS2 [Saccharomyces cerevisiae S288c]
gi|392299198|gb|EIW10292.1| Pus2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 370
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
+ YCG GY GMQ NP KTIEG++ LF GA+SE + P++ + +ARTDKGV
Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60
Query: 124 AVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
A+ ++S + + V +LN+ LP +IR++G + V FNA+ CD R Y YL+P F
Sbjct: 61 AMLNLLSLKITLR-EDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQYLIPEFI 119
Query: 184 L 184
L
Sbjct: 120 L 120
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 330 LLKG--SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVN 387
LL G SG+C + F ++ YVG+HNFHNFTT DPSA+R+I VV+
Sbjct: 185 LLSGTLSGYCLSPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSAQRHI----KKVVVS 240
Query: 388 VEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVG 447
++ + GQSFMLHQIR+M+ LAV R P +++ +P AP G
Sbjct: 241 QASPGWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQG 300
Query: 448 LYLDECIFASYNKKWKD 464
L L+ +F YN K ++
Sbjct: 301 LLLEGPVFDGYNTKLRN 317
>gi|151943741|gb|EDN62051.1| pseudouridine synthase [Saccharomyces cerevisiae YJM789]
gi|190407023|gb|EDV10290.1| pseudouridine synthase [Saccharomyces cerevisiae RM11-1a]
gi|256269708|gb|EEU04978.1| Pus2p [Saccharomyces cerevisiae JAY291]
gi|259146442|emb|CAY79699.1| Pus2p [Saccharomyces cerevisiae EC1118]
gi|323333685|gb|EGA75078.1| Pus2p [Saccharomyces cerevisiae AWRI796]
gi|323348667|gb|EGA82910.1| Pus2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354937|gb|EGA86768.1| Pus2p [Saccharomyces cerevisiae VL3]
gi|365765568|gb|EHN07075.1| Pus2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 370
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
+ YCG GY GMQ NP KTIEG++ LF GA+SE + P++ + +ARTDKGV
Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60
Query: 124 AVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
A+ ++S + + V +LN+ LP +IR++G + V FNA+ CD R Y YL+P F
Sbjct: 61 AMLNLLSLKITLR-EDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQYLIPEFI 119
Query: 184 L 184
L
Sbjct: 120 L 120
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 330 LLKG--SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVN 387
LL G SG+C + F ++ YVG+HNFHNFTT DPSA+R+I VV+
Sbjct: 185 LLSGTLSGYCLPPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSAQRHI----KKVVVS 240
Query: 388 VEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVG 447
++ + GQSFMLHQIR+M+ LAV R P +++ +P AP G
Sbjct: 241 QASPGWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQG 300
Query: 448 LYLDECIFASYNKKWKD 464
L L+ +F YN K ++
Sbjct: 301 LLLEGPVFDGYNTKLRN 317
>gi|207345339|gb|EDZ72195.1| YGL063Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 330
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
+ YCG GY GMQ NP KTIEG++ LF GA+SE + P++ + +ARTDKGV
Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60
Query: 124 AVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
A+ ++S + + V +LN+ LP +IR++G + V FNA+ CD R Y YL+P F
Sbjct: 61 AMLNLLSLKITLR-EDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQYLIPEFI 119
Query: 184 L 184
L
Sbjct: 120 L 120
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 330 LLKG--SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVN 387
LL G SG+C + F ++ YVG+HNFHNFTT DPSA+R+I VV+
Sbjct: 185 LLSGTLSGYCLPPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSAQRHI----KKVVVS 240
Query: 388 VEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVG 447
++ + GQSFMLHQIR+M+ LAV R P +++ +P AP G
Sbjct: 241 QASPGWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQG 300
Query: 448 LYLDECIFASYNKKWKD 464
L L+ +F YN K ++
Sbjct: 301 LLLEGPVFDGYNTKLRN 317
>gi|358369797|dbj|GAA86410.1| tRNA pseudouridine synthase [Aspergillus kawachii IFO 4308]
Length = 617
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY+GMQ + KTIEG+L A +GA+S+ + +P++ R ART
Sbjct: 126 KKKVAVLLGYSGTGYKGMQLSETEKTIEGELFAAFVAAGAISKANATDPKKSSLVRCART 185
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G +VS + ++ +++++N L +QIR++ SF++ + CD R Y YL
Sbjct: 186 DKGVHAAGNIVSLKLIVEDEDIIQKINEKLSSQIRVWDILVTNKSFSSYQLCDSRIYEYL 245
Query: 179 LP 180
+P
Sbjct: 246 IP 247
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFG-ADSVVNVEGIDFLKCEVVGQSF 403
R L YVG++NF N+T + DPS++R+I SF A+ + + G ++L +V GQSF
Sbjct: 393 RVQEALDKYVGTNNFFNYTIQKTHADPSSKRHIKSFKMAEQPIIINGTEWLSLKVHGQSF 452
Query: 404 MLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
M+HQIRKM+ +A VVR C PQ ++ET I +P AP +GL L+ +F SYN+K
Sbjct: 453 MMHQIRKMVAMAAMVVRCGCDPQRIVETYGAN--KIAIPKAPGLGLLLERPVFDSYNRK- 509
Query: 463 KDSHE 467
+HE
Sbjct: 510 --THE 512
>gi|323305032|gb|EGA58786.1| Pus2p [Saccharomyces cerevisiae FostersB]
Length = 370
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
+ YCG GY GMQ NP KTIEG++ LF GA+SE + P++ + +ARTDKGV
Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60
Query: 124 AVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
A+ ++S + + V +LN+ LP +IR++G + V FNA+ CD R Y YL+P F
Sbjct: 61 AMLNLLSLKITLR-EDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQYLIPEFI 119
Query: 184 L 184
L
Sbjct: 120 L 120
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 330 LLKG--SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVN 387
LL G SG+C + F ++ YVG+HNFHNFTT DPSA+R+I VV+
Sbjct: 185 LLSGTLSGYCLPPSKLDAFEAAMQDYVGTHNFHNFTTGKLWGDPSAQRHI----KKVVVS 240
Query: 388 VEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVG 447
++ + GQSFMLHQIR+M+ LAV R P +++ +P AP G
Sbjct: 241 QASPGWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQG 300
Query: 448 LYLDECIFASYNKKWKD 464
L L+ +F YN K ++
Sbjct: 301 LLLEGPVFDGYNTKLRN 317
>gi|134080163|emb|CAK46143.1| unnamed protein product [Aspergillus niger]
Length = 567
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFG-ADSVVNVEGIDFLKCEVVGQSF 403
R L YVG++NF N+T + DPS++R+I SF A+ + + G ++L +V GQSF
Sbjct: 343 RVQEALDKYVGTNNFFNYTIQKTHADPSSKRHIKSFKMAEQPIIINGTEWLSLKVHGQSF 402
Query: 404 MLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
M+HQIRKM+ +A VVR C PQ ++ET I +P AP +GL L+ +F SYN+K
Sbjct: 403 MMHQIRKMVAMAAMVVRCGCDPQRIVETYGAN--KIAIPKAPGLGLLLERPVFDSYNRK- 459
Query: 463 KDSHE 467
+HE
Sbjct: 460 --THE 462
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 75/121 (61%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY+GMQ + KTIEG+L A +GA+S+ + +P++ R ART
Sbjct: 118 KKKVAVLLGYSGTGYKGMQLSETEKTIEGELFAAFVAAGAISKANATDPKKSSLVRCART 177
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGV A G +VS + ++ +++++N L +QIR++ SF++ + CD R Y YL
Sbjct: 178 DKGVHAAGNIVSLKLIVEDDDIIQKINEKLSSQIRVWDILVTNKSFSSYQLCDSRIYEYL 237
Query: 179 L 179
+
Sbjct: 238 I 238
>gi|365990127|ref|XP_003671893.1| hypothetical protein NDAI_0I00810 [Naumovozyma dairenensis CBS 421]
gi|343770667|emb|CCD26650.1| hypothetical protein NDAI_0I00810 [Naumovozyma dairenensis CBS 421]
Length = 328
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 71/117 (60%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
+F + Y+GSHNFHNFT + + D S +RY+ +V++ I+++ + GQSFM
Sbjct: 188 KFQNVSNQYIGSHNFHNFTVKKTSTDLSCKRYVKKIIIAPLVDMNNIEWISVRLHGQSFM 247
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
++QIRKM+ LA+ + R P S + + D+ + +P AP GL LD IF +YN+K
Sbjct: 248 MNQIRKMLSLAIYLTRYDYPSSTVNSLFATDIKVYIPNAPASGLLLDFPIFDAYNEK 304
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 54 RQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWA 113
R++ KRR +AI Y G GY GMQ NP +TIE L AL A+SE++ + +
Sbjct: 26 RKIPKRR-VAIMLGYRGTGYYGMQYNPPRETIESTLFNALVSVDAISEKNSLDISKNGLM 84
Query: 114 RSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNL-------PTQIRIFGYKRVTASFNA 166
R+ARTDKGV A G ++S + + P + L + L + ++I+ +R+ SFN
Sbjct: 85 RTARTDKGVHAAGNLISLKVLMKDPNTLNELKTKLNGVLSESGSGLKIWDIRRINKSFNC 144
Query: 167 KKFCDQRRYVYLLPVFALDSSSHR 190
+K C R Y YLLP LD++ R
Sbjct: 145 RKVCSSRWYEYLLPACVLDNTVTR 168
>gi|323337610|gb|EGA78855.1| Pus2p [Saccharomyces cerevisiae Vin13]
Length = 406
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
+ YCG GY GMQ NP KTIEG++ LF GA+SE + P++ + +ARTDKGV
Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60
Query: 124 AVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
A+ ++S + + V +LN+ LP +IR++G + V FNA+ CD R Y YL+P F
Sbjct: 61 AMLNLLSLKITLR-EDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQYLIPEFI 119
Query: 184 L 184
L
Sbjct: 120 L 120
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 330 LLKG--SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVN 387
LL G SG+C + F ++ YVG+HNFHNFTT DPSA+R+I VV+
Sbjct: 185 LLSGTLSGYCLPPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSAQRHI----KKVVVS 240
Query: 388 VEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVG 447
++ + GQSFMLHQIR+M+ LAV R P +++ +P AP G
Sbjct: 241 QASPGWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQG 300
Query: 448 LYLDECIFASYNKKWKD 464
L L+ +F YN K ++
Sbjct: 301 LLLEGPVFDGYNTKLRN 317
>gi|357626173|gb|EHJ76355.1| hypothetical protein KGM_22659 [Danaus plexippus]
Length = 290
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLH 406
N +L +Y G+ ++HNFT + +DPS+ RY++SF + V ++F + V GQSFMLH
Sbjct: 180 NEVLGYYKGTKSYHNFTEKKHFQDPSSLRYMMSFVLERVFMESEMEFAELLVKGQSFMLH 239
Query: 407 QIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASY 458
QIRKMIGL +AVVR S +E + K+ + +PTAP +GL LD+ I Y
Sbjct: 240 QIRKMIGLMIAVVRGHTDISTLEKSFGKE-KVMIPTAPGLGLVLDKVIIYFY 290
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
KR+K+A+ YCGV Y GMQ+NPG TIE DL +AL+ + ++E D N + + RS+
Sbjct: 73 IKRKKMAMLLGYCGVDYYGMQRNPGVPTIEEDLLKALYEAKYITEDDFNNQQNAQFQRSS 132
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVE------------RLNSNLPTQI-RIFGYKRVTAS 163
RTDKGVSA QVV+ + + P + E R+ S Q+ + GY + T S
Sbjct: 133 RTDKGVSAARQVVTYSYTL-PTYVFESNVASEDERKAYRITSQKIDQVNEVLGYYKGTKS 191
Query: 164 FN----AKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVI 219
++ K F D Y++ F L+ L G + + RK+I
Sbjct: 192 YHNFTEKKHFQDPSSLRYMMS-FVLERVFMESEMEFAELLVKGQSFM-----LHQIRKMI 245
Query: 220 GVM 222
G+M
Sbjct: 246 GLM 248
>gi|256087148|ref|XP_002579738.1| pseudouridylate synthase [Schistosoma mansoni]
gi|350644398|emb|CCD60867.1| pseudouridylate synthase, putative [Schistosoma mansoni]
Length = 413
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
KRR AI Y G GY GMQ+ P TIEG+L +ALF G + +R + R+++
Sbjct: 36 KRRNNAILLMYSGWGYYGMQRCPVFPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASK 95
Query: 118 TDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
TDK VSA+GQV S + D L+ +LN++LP IR+ RVT F++ C R Y Y
Sbjct: 96 TDKSVSALGQVCSMQLKED-TDLLSKLNNSLPENIRVLDIIRVTRGFSSYSSCTHRIYDY 154
Query: 178 LLPVFALDSSS 188
LLP FAL ++
Sbjct: 155 LLPTFALSPAT 165
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E+ + NR+L+ Y G+HNF+NFT+ D S RYIIS + + + G
Sbjct: 181 EQITQVNRLLEKYKGTHNFYNFTSGRLVTDRSCSRYIISAECMPTFLLGEHQYTIIRIAG 240
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFMLHQIRKMIGLA+AV+R A +++ + K I++P AP +GL L++ F+ YN
Sbjct: 241 QSFMLHQIRKMIGLALAVLRGYATEAVFDIVFSK-ARIDIPKAPGLGLMLNQVDFSQYNT 299
Query: 461 KWKD 464
K+++
Sbjct: 300 KYQN 303
>gi|256087146|ref|XP_002579737.1| pseudouridylate synthase [Schistosoma mansoni]
gi|350644397|emb|CCD60866.1| pseudouridylate synthase, putative [Schistosoma mansoni]
Length = 428
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
KRR AI Y G GY GMQ+ P TIEG+L +ALF G + +R + R+++
Sbjct: 51 KRRNNAILLMYSGWGYYGMQRCPVFPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASK 110
Query: 118 TDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
TDK VSA+GQV S + D L+ +LN++LP IR+ RVT F++ C R Y Y
Sbjct: 111 TDKSVSALGQVCSMQLKED-TDLLSKLNNSLPENIRVLDIIRVTRGFSSYSSCTHRIYDY 169
Query: 178 LLPVFALDSSS 188
LLP FAL ++
Sbjct: 170 LLPTFALSPAT 180
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E+ + NR+L+ Y G+HNF+NFT+ D S RYIIS + + + G
Sbjct: 196 EQITQVNRLLEKYKGTHNFYNFTSGRLVTDRSCSRYIISAECMPTFLLGEHQYTIIRIAG 255
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFMLHQIRKMIGLA+AV+R A +++ + K I++P AP +GL L++ F+ YN
Sbjct: 256 QSFMLHQIRKMIGLALAVLRGYATEAVFDIVFSK-ARIDIPKAPGLGLMLNQVDFSQYNT 314
Query: 461 KWKD 464
K+++
Sbjct: 315 KYQN 318
>gi|296004937|ref|XP_002808812.1| pseudouridylate synthase, putative [Plasmodium falciparum 3D7]
gi|225632204|emb|CAX64089.1| pseudouridylate synthase, putative [Plasmodium falciparum 3D7]
Length = 556
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 142/320 (44%), Gaps = 52/320 (16%)
Query: 144 LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD--SSSHRDRESVMASLGS 201
LN +LP I+ F +VT SF+A+KFC R Y YL PV+ L + + +E+ ++
Sbjct: 223 LNDHLPCDIKCFKIYKVTKSFDARKFCSFRFYEYLFPVYVLSEVQVNEKYKETFHQAILD 282
Query: 202 GNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTN 261
+E V+ C E KRT N+E ++S K + + NGD N
Sbjct: 283 IDEYVQ--RCKEE---------KRT-----RRNNEKNHIDSTNKENENIYFKNGD----N 322
Query: 262 LESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEE 321
++S+ S N NS+ + T + V+N D+ D + + +
Sbjct: 323 IDSMNS---------TTNNNSKDFSCTKDNTEQPNIVENIKRDII-------DEDIFSIK 366
Query: 322 RSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFG 381
+E L EEE F I +YVG HNFH FT K D + R+I F
Sbjct: 367 H---FKEDL--------NEEELNTFFDIFNNYVGYHNFHCFT--KKKIDQTTYRFIKYFD 413
Query: 382 ADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP 441
S V + FL +++GQSF++HQIRKMI LAV R + I L I +
Sbjct: 414 V-STVKLFDYHFLSVKILGQSFLMHQIRKMITLAVETYRKATSINSIYYCLNTKNYIPIT 472
Query: 442 TAPEVGLYLDECIFASYNKK 461
P GL L F +YN+K
Sbjct: 473 LFPSDGLMLICPYFNAYNEK 492
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 60 RKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+K A+ Y G Y G Q + +TIE LE L A+ ++ + +RSART
Sbjct: 51 KKYALCIGYIGSQYHGCQGQGENCETIENTLERTLLKINAIKKKKFFKNFNFCLSRSART 110
Query: 119 DKGVSAVGQVV 129
D+GV A+ +
Sbjct: 111 DQGVHALFNIF 121
>gi|432095058|gb|ELK26447.1| tRNA pseudouridine synthase A, mitochondrial [Myotis davidii]
Length = 214
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
++ NR+L Y G+HNFHNFT++ +PSA+RY++ + +G++F +V GQSF
Sbjct: 94 RQVNRLLACYKGTHNFHNFTSQKGPREPSAQRYVLDMFCEEPFERDGMEFAVIKVKGQSF 153
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKW 462
M HQIRKM+GL VA+V+ AP+ ++E + + ++VP AP +GL L + + W
Sbjct: 154 MTHQIRKMVGLVVAIVKGYAPEDVLERS-WGEAKVDVPKAPGLGLVLACLMLVRVCRPW 211
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 60/82 (73%), Gaps = 6/82 (7%)
Query: 114 RSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
R ARTDKGVSA GQVVS + + ID ++E++NS+LP+ IRI G KRVT FN+K CD
Sbjct: 5 RCARTDKGVSAAGQVVSLKVWLID--DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDA 62
Query: 173 RRYVYLLPVFALDSSSHRDRES 194
R YVY+LP FA +H+DR++
Sbjct: 63 RTYVYMLPTFAF---AHKDRDA 81
>gi|402074306|gb|EJT69835.1| tRNA pseudouridine synthase 1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 694
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 78/171 (45%), Gaps = 45/171 (26%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ Y G GY+GMQ N KTIEGDL A +GA+S+ + +PR+ R ART
Sbjct: 128 KRKVAVLIGYAGTGYKGMQINHQEKTIEGDLFRAFVEAGAISKANASDPRKVSLMRCART 187
Query: 119 DKGVSAVGQVVSGRFCIDPP---------------------------------------- 138
DKGV A VVS + +D P
Sbjct: 188 DKGVHAASNVVSLKVILDEPEAAKTAEASTEEGEGTKTNSAETAGDDQNLEVDKAGEAGD 247
Query: 139 -----GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
L R+N +LP QIRI+G R +F++ + CD R Y YL+P L
Sbjct: 248 MTAEEALTARINKHLPDQIRIWGIIRTNNAFSSHQACDSRWYEYLMPSHVL 298
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 76/127 (59%), Gaps = 9/127 (7%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGID-----FL 394
EE + L Y+G++NFHN+T K D SA+R+I SF VVN + I +L
Sbjct: 475 EERLSQLQGALDCYIGTNNFHNYTILKKFSDSSAKRHIKSF----VVNRQPIQIGDTQWL 530
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454
+V GQSFM+HQIRKM+ +AV +VR+ AP + A I++P AP +GL L+ +
Sbjct: 531 SLKVHGQSFMMHQIRKMVAMAVLLVRSGAPPADRIKASYGPKRISIPKAPGLGLLLERPV 590
Query: 455 FASYNKK 461
F +Y+K+
Sbjct: 591 FENYSKR 597
>gi|403176397|ref|XP_003335055.2| hypothetical protein PGTG_16662 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172233|gb|EFP90636.2| hypothetical protein PGTG_16662 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 551
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 6/132 (4%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+R++AI Y G GYQG Q NPG KTIEG L A +G +++ + +P + R+ART
Sbjct: 41 KRRVAIMIGYYGRGYQGSQINPGTKTIEGTLFNAFVRAGCITQDNSTHPNKVGLQRAART 100
Query: 119 DKGVSAVGQVVSGRFCIDPPG------LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
D VSA ++S + ++PP + + +N LP+ ++I+ RV SFN + FCD
Sbjct: 101 DANVSACCNLISLKLILNPPEIGQDKRMDQHINRFLPSDMKIWEIIRVQNSFNPRSFCDS 160
Query: 173 RRYVYLLPVFAL 184
R Y Y LP +
Sbjct: 161 RVYEYSLPTWLF 172
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 67/143 (46%), Gaps = 20/143 (13%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGID------------ 392
R +L + G+HNFHN T + +A R + F V G D
Sbjct: 245 RIKSVLDQFRGTHNFHNLTVGKAFTERNAVRIMKDFTVSEPFLVGGSDPTNPKDDDDHQP 304
Query: 393 -------FLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPE 445
++ GQSFMLHQIRKMIGL V V R P S+I+ L +++P AP
Sbjct: 305 LENPPTEWISITFHGQSFMLHQIRKMIGLLVLVCRTRTPVSIIK-QLYGPRKVSIPKAPG 363
Query: 446 VGLYLDECIFASYNKKWKDSHEE 468
+GL L + F YNKK + +E+
Sbjct: 364 IGLILRKLNFHGYNKKIQHINEQ 386
>gi|170586438|ref|XP_001897986.1| tRNA pseudouridine synthase family protein [Brugia malayi]
gi|158594381|gb|EDP32965.1| tRNA pseudouridine synthase family protein [Brugia malayi]
Length = 225
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 103/212 (48%), Gaps = 22/212 (10%)
Query: 41 LIPA--AAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGA 98
L PA A D ++ K A+ AY G Y GMQ TIEG+L +A+ G
Sbjct: 6 LAPADSAGDIDEPVRKSRRKEYSYALLLAYQGKKYNGMQVQKDFPTIEGELFKAMAKCGY 65
Query: 99 VSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCID-----PPGLVERLNSNLPTQIR 153
+ E D +P R+ + R+ARTD+ VSA Q+ S R + ++LN++LP +IR
Sbjct: 66 ICENDVFSPVRFAFQRAARTDRSVSAARQMCSMRLAPENHEYFLKTATDKLNTHLPEEIR 125
Query: 154 IFGYKRVTASFNAKKFCDQRRYVYLLPVFA------LDSSSHRDRESVMASLGSGNELVK 207
+ G +R T SF A K CD+R Y Y LP +A L +S R E+ +A L N+L+
Sbjct: 126 VLGVRRATRSFKAHKNCDKRTYSYTLPTYAFARADELTTSGFRMSETSIAEL---NDLLA 182
Query: 208 CLECSER------GRKVIGVMGKRTYQLGLPS 233
+ + GR+V + Q PS
Sbjct: 183 LYKGTHNFFNYTSGRRVFDSVANNMTQFSNPS 214
>gi|324505293|gb|ADY42276.1| tRNA pseudouridine synthase A [Ascaris suum]
Length = 491
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 7/144 (4%)
Query: 331 LKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSV--- 385
L S + +E N +L+ +VG+HNF N+T++ + D S RYII F GA +
Sbjct: 195 LTSSAYRITDETINEINALLQIFVGTHNFFNYTSKREFSDRSCFRYIIDFKCGAKFLFKN 254
Query: 386 -VNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAP 444
+ E ++FL + GQSFMLHQIRKMIG+ +A+ R +S I+ + + ++VP AP
Sbjct: 255 ELRNEDVEFLTISIKGQSFMLHQIRKMIGMVIAISRGLLYKSDIQRSFE-SARMDVPKAP 313
Query: 445 EVGLYLDECIFASYNKKWKDSHEE 468
+GL L++ + Y+KK+ +HE+
Sbjct: 314 GLGLLLEKVHYDHYDKKFAKTHEK 337
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 81/148 (54%), Gaps = 9/148 (6%)
Query: 52 TKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYD 111
K++ KR + A+ AY G Y GMQ A TIEG L A+ G +++ + P +
Sbjct: 54 VKKRWKKRTRYAMLIAYQGKNYCGMQVQKDAPTIEGCLLNAMQKYGLITDEEVIKPNLFF 113
Query: 112 WARSARTDKGVSAVGQVVSGRFCID---PPGLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
+ R+ARTD+ VSAV Q+ S D P + + LN LP IR+ G +R T +FNA+K
Sbjct: 114 FQRAARTDRAVSAVRQMCSMMLNFDEQLPKTVPDELNKLLPEDIRVMGIRRATRTFNAQK 173
Query: 169 FCDQRRYVYLLPVFA------LDSSSHR 190
CD R Y Y LP +A L SS++R
Sbjct: 174 DCDARTYSYTLPTYAFAKVDELTSSAYR 201
>gi|256087150|ref|XP_002579739.1| pseudouridylate synthase [Schistosoma mansoni]
gi|350644399|emb|CCD60868.1| pseudouridylate synthase, putative [Schistosoma mansoni]
Length = 369
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVG 400
E+ + NR+L+ Y G+HNF+NFT+ D S RYIIS + + + G
Sbjct: 137 EQITQVNRLLEKYKGTHNFYNFTSGRLVTDRSCSRYIISAECMPTFLLGEHQYTIIRIAG 196
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSFMLHQIRKMIGLA+AV+R A +++ + K I++P AP +GL L++ F+ YN
Sbjct: 197 QSFMLHQIRKMIGLALAVLRGYATEAVFDIVFSK-ARIDIPKAPGLGLMLNQVDFSQYNT 255
Query: 461 KWKD 464
K+++
Sbjct: 256 KYQN 259
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 68 YCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQ 127
Y G GY GMQ+ P TIEG+L +ALF G + +R + R+++TDK VSA+GQ
Sbjct: 2 YSGWGYYGMQRCPVFPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASKTDKSVSALGQ 61
Query: 128 VVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSS 187
V S + D L+ +LN++LP IR+ RVT F++ C R Y YLLP FAL +
Sbjct: 62 VCSMQLKED-TDLLSKLNNSLPENIRVLDIIRVTRGFSSYSSCTHRIYDYLLPTFALSPA 120
Query: 188 S 188
+
Sbjct: 121 T 121
>gi|365760751|gb|EHN02448.1| Pus2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 336
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Query: 46 AGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRG 105
A + R+L ++ K + Y G GY GMQ NP +TIEG++ L GA+SE++
Sbjct: 3 AATAAVANRRL-RKHKAVMLLGYRGSGYYGMQYNPPHRTIEGEILAKLLEVGAISEKNSS 61
Query: 106 NPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFN 165
P++ + +ARTDKGV A+ ++S + + V +LN+ LP +IR++G + +FN
Sbjct: 62 APKKNSFMAAARTDKGVHAMLNLLSLKISLQ-EDTVAKLNAALPPEIRVWGIQPANKNFN 120
Query: 166 AKKFCDQRRYVYLLPVFAL 184
A+ C R Y YL+P FAL
Sbjct: 121 ARSACGSRWYEYLVPDFAL 139
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIR 409
+K YVG+HNF+NFTT + DPSA+R+I + VV ++ + GQSFMLHQIR
Sbjct: 226 MKEYVGTHNFYNFTTGKLSGDPSAQRHI----KEVVVTQTSSRWISVRIHGQSFMLHQIR 281
Query: 410 KMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFAS 457
+M+ LAV VVR P SL+ V +P AP GL L+ + S
Sbjct: 282 RMVALAVIVVRCQLPPSLVRNHFAAGVRKYIPRAPAQGLLLEGPVLTS 329
>gi|66356668|ref|XP_625512.1| Pus1p-like type II pseudousynthas TruA [Cryptosporidium parvum Iowa
II]
gi|46226500|gb|EAK87494.1| Pus1p-like type II pseudousynthas TruA [Cryptosporidium parvum Iowa
II]
Length = 501
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 4/129 (3%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEG-ID 392
F +E+ KRF IL Y+G+H+FHNFT+++ ED ++ R+I I S ++G I+
Sbjct: 323 FSLSDEDLKRFQSILNEYIGTHSFHNFTSKSSYEDSTSWRHIEEIKVVKVSQNEIKGEIN 382
Query: 393 FLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDE 452
+K + GQSF+LHQIRKM+ LA+ + R AP + I+ D ++ AP GL LD
Sbjct: 383 LIKIIIKGQSFLLHQIRKMVALAIEIFRGTAPSNGIQLCFLPD-KFSIHLAPSQGLLLDR 441
Query: 453 CIFASYNKK 461
+ SYN K
Sbjct: 442 VFYNSYNTK 450
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 13/80 (16%)
Query: 66 FAYCGVGYQGMQ-------KNPGAKTIEGDLEEAL------FHSGAVSERDRGNPRRYDW 112
F Y G Y GMQ K +TIEG++E+ L F S ++ G ++ W
Sbjct: 14 FGYDGSDYHGMQIQMRNNKKVEELRTIEGEMEDCLEKLGMFFLSNEQNDDQGGLLKKIKW 73
Query: 113 ARSARTDKGVSAVGQVVSGR 132
+R RTDKGV +V QVVS R
Sbjct: 74 SRVGRTDKGVHSVCQVVSFR 93
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 140 LVERLNSNL-PTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+V +LN L T+I++F RVT +F+A+ C +R+Y YL+P F L
Sbjct: 168 IVTKLNELLESTKIKVFKIFRVTKNFDARTDCSRRQYEYLMPEFLL 213
>gi|198427214|ref|XP_002128771.1| PREDICTED: similar to Pseudouridine synthase 1 [Ciona intestinalis]
Length = 531
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 79/155 (50%), Gaps = 16/155 (10%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPG---AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RK+A+ FAYCG Y G+Q N G KTIEGDL +AL + V P + + +
Sbjct: 68 KRKVAMLFAYCGANYHGLQMNRGERWIKTIEGDLFQALVDAKVVPSNCVQEPHKMTYKSA 127
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
+RTDKGVS GQV S + ++ +V +N +LP I + +R T FNA+ + R Y
Sbjct: 128 SRTDKGVSTCGQVASLKLRLN-ENVVGLINQHLPEDIVVMAVRRTTQGFNAQLKAEGRTY 186
Query: 176 VYLLPVFALDSSSHRDRESVMASLGSGNELVKCLE 210
Y LP FA A G+GN K E
Sbjct: 187 SYTLPTFAF------------ADYGTGNTSYKITE 209
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 88/182 (48%), Gaps = 22/182 (12%)
Query: 300 NENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYG-------------------- 339
NEN ++ D VMA R+ G LK G Y
Sbjct: 148 NENVVGLINQHLPEDIVVMAVRRTTQGFNAQLKAEGRTYSYTLPTFAFADYGTGNTSYKI 207
Query: 340 -EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEV 398
E++ + IL Y G+H+FHNFT+ + + SA+R+II F V+ ++F+ +
Sbjct: 208 TEDKLLKVKSILYRYKGTHSFHNFTSGKRMGEMSAQRFIIEFEHGDPFLVQNVEFITLTI 267
Query: 399 VGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASY 458
GQSFMLHQIRKMIGL +A+V A + A + + ++P AP GL L++ + +
Sbjct: 268 KGQSFMLHQIRKMIGLLIAMVNGLAKEQHFIRAFSEPLE-DIPKAPGTGLVLEKVHYDGF 326
Query: 459 NK 460
NK
Sbjct: 327 NK 328
>gi|401625765|gb|EJS43758.1| pus2p [Saccharomyces arboricola H-6]
Length = 371
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 6/158 (3%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
+ Y G GY GMQ NP KTIEG++ LF GA+SE++ P++ + +ARTDKGV
Sbjct: 1 MLIGYRGTGYYGMQYNPPHKTIEGEILGKLFEVGAISEKNSLAPKKNSFMAAARTDKGVH 60
Query: 124 AVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
A+ ++S + + V +LN+ LP +IR++G + FNA+ CD R Y YL+P F
Sbjct: 61 AMLNLLSLKISLQ-EDTVAKLNAALPPEIRVWGIQSANKKFNARSACDSRWYEYLVPDFV 119
Query: 184 L-----DSSSHRDRESVMASLGSGNELVKCLECSERGR 216
DS+ +++ ++ E+ + RGR
Sbjct: 120 FIGPPQDSALYQNVGALYNKDDDSQEVWDAFQGQARGR 157
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
+ F ++ YVG+HNFHNFTT A DPSA+R+I + VV + + GQSF
Sbjct: 202 RAFEAAMQAYVGTHNFHNFTTGKLATDPSAQRHI----KEVVVRQVSPRWTSVRIHGQSF 257
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWK 463
MLHQIR+M+ LAV V R P + + ++P AP GL L+ +F YN K +
Sbjct: 258 MLHQIRRMVALAVLVARCQLPPTRVLNYFVVGTRKHIPRAPAHGLLLEGPVFEHYNVKLR 317
>gi|392565002|gb|EIW58179.1| tRNA pseudouridine synthase [Trametes versicolor FP-101664 SS1]
Length = 420
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 67/112 (59%), Gaps = 3/112 (2%)
Query: 76 MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCI 135
+Q +P +TIEG L EAL GAVSE + NP + AR+ARTD GV A G VVS +
Sbjct: 3 IQPDPKLRTIEGVLFEALIKVGAVSEDNSDNPTKVKLARAARTDAGVHAAGNVVSMKLIN 62
Query: 136 DPPG---LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
PG LV R+N LP +IRI+ RV SFNA+ CD R+Y Y P + +
Sbjct: 63 AIPGVPDLVARINEELPPEIRIWSIVRVQNSFNARTTCDSRKYTYFFPSYLM 114
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
K + GSHNFHNFT D S +R++ S +++ + GQSFMLHQ RK
Sbjct: 174 KKFEGSHNFHNFTVGRDFRDRSCQRFLKSVEISDPAVYGDTEWIAVLLHGQSFMLHQ-RK 232
Query: 411 MIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
MI V R P LIE L + +P P +GL L+ IF SY+K+
Sbjct: 233 MISALVLSCRAGTPPQLIEE-LYGPRPVFIPKMPALGLLLEYPIFESYSKR 282
>gi|384498317|gb|EIE88808.1| hypothetical protein RO3G_13519 [Rhizopus delemar RA 99-880]
Length = 560
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVV 399
+E K+F + ++G+H+FHN+T +K + S +R+I +EG++++ ++
Sbjct: 99 QERLKKFKQAFSFFIGTHDFHNYTI-SKNPEKSTQRHIKQIDVSDPKLIEGMEWISVKLH 157
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
G SFMLHQIRKMI +A+ V A S+I L K++++N+P AP GL LD ++ YN
Sbjct: 158 GSSFMLHQIRKMISIAMLCVHTNASLSMIPMTLNKEISLNIPKAPATGLLLDRPVYDYYN 217
Query: 460 KKWK 463
+K K
Sbjct: 218 EKVK 221
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 133 FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
I P L+ ++N LP IR++G+ F+AK CD R Y YLLP + L
Sbjct: 1 MIIKDPQLINKINDLLPKDIRVWGFVETPRGFHAKNQCDSRIYEYLLPTYTL 52
>gi|401837317|gb|EJT41261.1| PUS2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 389
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Query: 46 AGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRG 105
A + R+L ++ K + Y G GY GMQ NP +TIEG++ L GA+SE++
Sbjct: 3 AATAAVANRRL-RKHKAVMLLGYRGSGYYGMQYNPPHRTIEGEILAKLLEVGAISEKNSS 61
Query: 106 NPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFN 165
P++ + +ARTDKGV A+ ++S + + V +LN+ LP +IR++G + +FN
Sbjct: 62 APKKNSFMAAARTDKGVHAMLNLLSLKISLQ-EDTVAKLNAALPPEIRVWGIQPANKNFN 120
Query: 166 AKKFCDQRRYVYLLPVFAL 184
A+ C R Y YL+P FAL
Sbjct: 121 ARSACGSRWYEYLVPDFAL 139
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIR 409
+K YVG+HNF+NFTT + DPSA+R+I + VV ++ + GQSFMLHQIR
Sbjct: 226 MKEYVGTHNFYNFTTGKLSGDPSAQRHI----KEVVVTQTSSRWISVRIHGQSFMLHQIR 281
Query: 410 KMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKD 464
+M+ LAV VVR P SL+ V +P AP GL L+ +F YN K ++
Sbjct: 282 RMVALAVIVVRCQLPPSLVRNHFAAGVRKYIPRAPAQGLLLEGPVFDQYNTKLRN 336
>gi|67608685|ref|XP_666896.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657966|gb|EAL36665.1| hypothetical protein Chro.80065 [Cryptosporidium hominis]
Length = 501
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVE---GID 392
F +E+ KRF IL Y+G+H+FHNFT+++ ED ++ R+I V E I+
Sbjct: 323 FSLSDEDLKRFQSILNEYIGTHSFHNFTSKSSYEDSTSWRHIEEIKVVKVNQNEIKGDIN 382
Query: 393 FLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDE 452
+K + GQSF+LHQIRKM+ LA+ + R AP + I+ D ++ AP GL LD
Sbjct: 383 LIKIIIKGQSFLLHQIRKMVALAIEIFRGTAPSNGIQLCFLPD-KFSIHLAPSQGLLLDR 441
Query: 453 CIFASYNKK 461
+ SYN K
Sbjct: 442 VFYNSYNTK 450
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 54 RQLCKRRKIAIFFAYCGVGYQGMQ-------KNPGAKTIEGDLEEAL------FHSGAVS 100
+++ R + F Y G Y GMQ K +TIEG++E+ L F S +
Sbjct: 2 KEVIPMRTYCMSFGYDGSDYHGMQIQMRNNKKVEELRTIEGEMEDCLEKLGMFFVSNEQN 61
Query: 101 ERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSN 147
+ G ++ W+R RTDKGV +V QVVS R I G +E + N
Sbjct: 62 DDQGGLLKKIKWSRVGRTDKGVHSVCQVVSFRAKIKINGELEFILKN 108
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 140 LVERLNSNL-PTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+V +LN L T+I++F RVT +F+A+ C +R+Y YL+P F L
Sbjct: 168 IVAKLNKLLESTKIKVFKIFRVTKNFDARIDCSRRQYEYLMPEFLL 213
>gi|71413504|ref|XP_808888.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70873184|gb|EAN87037.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 634
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 150/350 (42%), Gaps = 34/350 (9%)
Query: 59 RRKIAIFFAYCGVGYQGMQKN--PGAKTIEGDLEEALFHSGAVSERDRGNPR---RYDWA 113
+RK+AI F Y G Y G+Q N PG T+E +L AL +G +S+ + + + +W
Sbjct: 99 KRKVAIIFGYVGERYCGLQWNHLPGYPTVEEELLRALHRTGMISKENYEQEKVQQKLNWE 158
Query: 114 RSARTDKGVSAVGQVVSGRFCI----------DPPGLVERLNSNLPTQIRIFGYKRVTAS 163
R++RTDKGV A+ V+S + DP L + LP I ++ VT S
Sbjct: 159 RASRTDKGVHALRNVISLNVMLPYAKGSTTEYDPQEARRILMTVLPHDIIVYEIVPVTRS 218
Query: 164 FNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMG 223
FNA C R Y Y LP FAL S R+ SL ++ E G + G
Sbjct: 219 FNAYMLCGARTYEYYLPTFALMSLDEYSRDYFPPSLAPARPTLE-----EVGFTGVASEG 273
Query: 224 KRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSE 283
R + PS + + + +T +G N N SV K E E E
Sbjct: 274 PRATEDETPSFAPLGTKRPREVEENGEATGDG---NDNANSVVGGKDTCEKHEREEEVEE 330
Query: 284 SVNETLVESRTS-ETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEE 342
+ + R S ETVQ + D + + ++ R++ + + S + E+
Sbjct: 331 RDGQQCIGGRNSNETVQKFH-------DGRFEKLLIF--RTIPA-DAMRHVSQYRLSPEQ 380
Query: 343 KKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGID 392
+ I + Y G++++HNFT +A DPS RY+ S VE D
Sbjct: 381 LEHARNIFRLYEGTYSYHNFTPGGRASDPSCMRYVTSVTVGDPFLVEPTD 430
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCA----PQSLIETALQKDVNINVPTAPE 445
G++ ++ E+ GQSFML+QIRKMIG AV+ CA PQ L + L K V VP AP
Sbjct: 494 GLEVVRIELHGQSFMLNQIRKMIG---AVISICAAGLSPQYLRDHLLNKAVRCGVPMAPA 550
Query: 446 VGLYLDECIFASYNKK 461
GL+L F YN +
Sbjct: 551 NGLFLSYLDFQRYNYR 566
>gi|225678874|gb|EEH17158.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb03]
Length = 547
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 6/120 (5%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGIDFLKCEVVGQS 402
R N L YVG+ NFHN+T + + SA+R+I SF +D ++ + G ++L +V GQS
Sbjct: 328 RINDALDLYVGTRNFHNYTIQKSFREASAKRHIKSFKISSDPII-INGTEWLSLKVHGQS 386
Query: 403 FMLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FM+HQIRKM+ + VVR C Q + ET D I +P AP +GL L+ IF SYNK+
Sbjct: 387 FMMHQIRKMVAMVAMVVRCGCDIQRIPET--YGDQKIAIPKAPGLGLLLERPIFDSYNKR 444
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 64/99 (64%)
Query: 83 KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVE 142
KTIEGDL A +GA+S+ + +P++ R ARTDKGV A G VVS + ++ +V+
Sbjct: 76 KTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTDKGVHAAGNVVSLKLIVEDSDVVQ 135
Query: 143 RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPV 181
++N++L QIR++G + SF++ + CD R Y YL+P
Sbjct: 136 KINNHLSPQIRVWGIEVTNKSFSSYQLCDSRVYEYLIPT 174
>gi|169849317|ref|XP_001831362.1| pseudouridylate synthase [Coprinopsis cinerea okayama7#130]
gi|116507630|gb|EAU90525.1| pseudouridylate synthase [Coprinopsis cinerea okayama7#130]
Length = 568
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 74/131 (56%), Gaps = 9/131 (6%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNP--GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+R+ A+ +CG GY GMQ P KTIEG L +AL GAVS+ + +P + AR+A
Sbjct: 133 KRQSALLIGFCGSGYSGMQIQPMDSVKTIEGVLFQALVKVGAVSQDNADDPVKVALARAA 192
Query: 117 RTDKGVSAVGQVVSGRFCIDPPG---LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQR 173
RTD GV A G VVS + PG LV +N LP +IR +G+ R SFNA+ R
Sbjct: 193 RTDAGVHAAGNVVSMKMISTIPGVPDLVAAVNEQLPPEIRFWGFVRTQNSFNAR----FR 248
Query: 174 RYVYLLPVFAL 184
+Y Y P + L
Sbjct: 249 KYTYFFPSYLL 259
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Query: 327 EEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVV 386
EE L++ + +R + Y G+HNFHNFT +D S R++ S + V
Sbjct: 301 EEDLIRKRRWRVDSGPIERLRETARRYEGTHNFHNFTVGRDFKDRSNFRFMKSITIEDPV 360
Query: 387 NVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEV 446
+++ GQSFMLHQIRKM+ V R AP +I+ L + + VP P +
Sbjct: 361 VYGETEWISVLFHGQSFMLHQIRKMMSGLVLSCRTGAPPEVIDQ-LYNEEQVFVPKMPSL 419
Query: 447 GLYLDECIFASYNKK 461
GL L+E +F SYN +
Sbjct: 420 GLLLEEPLFTSYNSR 434
>gi|224126927|ref|XP_002319961.1| predicted protein [Populus trichocarpa]
gi|222858337|gb|EEE95884.1| predicted protein [Populus trichocarpa]
Length = 445
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 12/171 (7%)
Query: 52 TKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAK---TIEGDLEEALFHSGAVSERDRGNPR 108
+K + +++K+A+ Y G Y+G+QK TIEG+LE A++ +G + E + GN
Sbjct: 24 SKWESIRKKKVALRVGYVGTDYRGLQKQHDQHSLLTIEGELERAIYEAGGIRESNYGNLN 83
Query: 109 RYDWARSARTDKGVSAVGQVVSGRFCI-------DPPGLV--ERLNSNLPTQIRIFGYKR 159
+ WARS+RTDKGV ++ ++ + I D G+V + +NS LP IR+
Sbjct: 84 KISWARSSRTDKGVHSLATTITMKMEIPENAWKDDLYGMVLAKHVNSYLPDSIRVLSILP 143
Query: 160 VTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLE 210
SF+ ++ CD R+Y YLLP + SH + + N ++ E
Sbjct: 144 AQKSFDPRRECDIRKYSYLLPAEVIGIKSHFSMAEIDDHISDFNNILNAFE 194
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 39/61 (63%)
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLY 449
G DF++ + G+SFMLHQIRKM+G AVAV R P+ LI +L K I +P AP L
Sbjct: 302 GFDFVEISIWGESFMLHQIRKMVGTAVAVKRKVLPRDLIMLSLTKFSRIVLPLAPSEVLI 361
Query: 450 L 450
L
Sbjct: 362 L 362
>gi|397605213|gb|EJK58925.1| hypothetical protein THAOC_20915 [Thalassiosira oceanica]
Length = 551
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 11/150 (7%)
Query: 46 AGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRG 105
A + + +RK+A + G Y G Q NP +T++ ++E ALF SG +S + G
Sbjct: 127 GAATESAAEEKVPKRKLAALIGFLGSKYSGFQVNPAKRTLQAEIELALFRSGILSATNFG 186
Query: 106 NPRRYDWARSARTDKGVSAVGQVVSGR---FC----IDPPGLVERL----NSNLPTQIRI 154
+P + W+ SARTDKGV A QV S + C I +E++ NSNLP+ I++
Sbjct: 187 HPSKCGWSNSARTDKGVHAASQVCSFKGEMICWNDQISQDEQLEKMRLIVNSNLPSDIQV 246
Query: 155 FGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
KR T SF ++ D+ RY Y++P F L
Sbjct: 247 LDIKRTTRSFCSRTARDKVRYQYMVPSFLL 276
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 341 EEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGI--------- 391
E+ + + L + G+ +FHN+T + + D S R+I+ F + V + G+
Sbjct: 327 EQVENLRKSLAIFEGTKSFHNYTRKLSSSDASTSRFIMKFASLDPVIMPGLTNEDGSKSP 386
Query: 392 --DFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLY 449
++ ++ GQSF+L+QIRKM+ AV + R IE + + + V AP GL+
Sbjct: 387 DSQWVPVQITGQSFLLNQIRKMVSAAVDLARGAVTHEQIEQSFSRQNLMKVDVAPAQGLF 446
Query: 450 LDECIFASYNK 460
LD F YN+
Sbjct: 447 LDRSSFEMYNE 457
>gi|154274161|ref|XP_001537932.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415540|gb|EDN10893.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 634
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 4/119 (3%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFG-ADSVVNVEGIDFLKCEVVGQSF 403
R N L YVG+ NFHN+T + D SA+R+I SF + + + G ++L +V GQSF
Sbjct: 335 RINDALGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLIINGTEWLSLKVHGQSF 394
Query: 404 MLHQIRKMIGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
M+HQIRKM+ + +VR C Q + ET D I +P AP +GL L+ IF SYNK+
Sbjct: 395 MMHQIRKMVAMTALIVRCGCDIQLVPET--YGDQKIAIPKAPGLGLLLERPIFDSYNKR 451
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 79/143 (55%), Gaps = 9/143 (6%)
Query: 19 RQEPDPKRLKMSATSTSDDER-----DLIPAAAGADSTTKRQLCKRR---KIAIFFAYCG 70
RQ PD KR K A+ S + +P A S + +RR K+A+ Y G
Sbjct: 73 RQIPD-KRAKAEASQESKRRKLEYGEKALPIYATEFSKEDIEADQRRPKKKVAVMLGYSG 131
Query: 71 VGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS 130
GY+GMQ + KTIEGDL A +GA+S+ + +P++ R ARTDKGV A G VVS
Sbjct: 132 SGYKGMQLSETEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTDKGVHAAGNVVS 191
Query: 131 GRFCIDPPGLVERLNSNLPTQIR 153
+ ++ P +V+++N +L QIR
Sbjct: 192 LKLIVEDPNVVQKINGHLSPQIR 214
>gi|17565126|ref|NP_507242.1| Protein PUS-1, isoform a [Caenorhabditis elegans]
gi|3880517|emb|CAA16518.1| Protein PUS-1, isoform a [Caenorhabditis elegans]
Length = 415
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
Query: 331 LKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNV-- 388
L S F E N IL Y+G+HNF N+T + +D S+ RYIISF
Sbjct: 167 LTNSSFRLSPETLAEVNSILSIYLGTHNFFNYTAKRAYDDMSSNRYIISFECKEPFLFRD 226
Query: 389 ----EGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAP 444
E ++F++ + GQSF+LHQIRKM+G+ + V+R +S I+ + + +++P AP
Sbjct: 227 DFRKEDVEFVQIVIKGQSFVLHQIRKMVGMVITVIRELHLKSSIQRSFEGQ-RMDIPMAP 285
Query: 445 EVGLYLDECIFASYNKKWKDSHE 467
+GL L+ + SY++K SHE
Sbjct: 286 GLGLLLERTHYDSYDRKNSKSHE 308
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 80/170 (47%), Gaps = 16/170 (9%)
Query: 45 AAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDR 104
+ G K+ K+ K A+ Y G Y GMQ TIE L EA+ +G ++ +
Sbjct: 18 SGGVHKEPKKPRVKQAKYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMETAGWITTAQK 77
Query: 105 GNPRRYDWARSARTDKGVSAVGQVVS-------GRFCIDPPGLVERLNSNLPTQIRIFGY 157
P + + R+ARTD+ VSA Q+ ++ + G+ LN+ LP IR+FG
Sbjct: 78 EKPFDFFFQRAARTDRAVSAARQMCGMQLPRDDAKYQAEGAGI---LNNILPADIRVFGM 134
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFA------LDSSSHRDRESVMASLGS 201
+R T F+ +K CD R Y Y P F L +SS R +A + S
Sbjct: 135 RRTTNFFHPQKQCDHRTYSYTCPSFVFAKPTELTNSSFRLSPETLAEVNS 184
>gi|313223412|emb|CBY40401.1| unnamed protein product [Oikopleura dioica]
Length = 307
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPG---AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
++K+AI +YCG Y G+Q NPG TIE + +AL + V + ++ +
Sbjct: 80 KKKVAILISYCGKNYHGLQHNPGDDKVDTIEKRVFQALVAAKVVYSNVINDRKKCAYQSC 139
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
+RTDKGVSA+G V S + C P L E +N++LP IR+ +++VT F AKK C R Y
Sbjct: 140 SRTDKGVSAIGNVASLK-CKIPKNLCELVNAHLPDDIRLTSFEQVTKGFCAKKRCTHRTY 198
Query: 176 VYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSND 235
Y P S DR S E V+ E +K IG + G D
Sbjct: 199 SYYCPTICFGSKEDWDRPSSFRISAEKLEGVR-----ELLKKYIGTRSYHNFTSGKRQGD 253
Query: 236 ENAS---LNSQVKVDTVVSTCN 254
E+A L+ +++ D + CN
Sbjct: 254 ESAKRHILDFRIQGDPFI--CN 273
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 334 SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGI 391
S F E+ + +LK Y+G+ ++HNFT+ + D SA+R+I+ F D + E
Sbjct: 217 SSFRISAEKLEGVRELLKKYIGTRSYHNFTSGKRQGDESAKRHILDFRIQGDPFICNE-W 275
Query: 392 DFLKCEVVGQSFMLHQIRKMIGLAVA 417
++++ VVGQSFM+HQIRKM+GL +A
Sbjct: 276 EYVELRVVGQSFMIHQIRKMVGLIIA 301
>gi|313231689|emb|CBY08802.1| unnamed protein product [Oikopleura dioica]
Length = 443
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPG---AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
++K+AI +YCG Y G+Q NPG TIE + +AL + V + ++ +
Sbjct: 80 KKKVAILISYCGKNYHGLQHNPGDDKVDTIEKRVFQALVAAKVVYSNVINDRKKCAYQSC 139
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
+RTDKGVSA+G V S + C P L E +N++LP IR+ +++VT F AKK C R Y
Sbjct: 140 SRTDKGVSAIGNVASLK-CKIPKNLCELVNAHLPDDIRLTSFEQVTKGFCAKKRCTHRTY 198
Query: 176 VYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSND 235
Y P S DR S E V+ E +K IG + G D
Sbjct: 199 SYYCPTICFGSKEDWDRPSSFRISTEKLEGVR-----ELLKKYIGTRSYHNFTSGKRQGD 253
Query: 236 ENAS---LNSQVKVDTVVSTCN 254
E+A L+ +++ D + CN
Sbjct: 254 ESAKRHILDFRIQGDPFI--CN 273
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 4/131 (3%)
Query: 334 SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVVNVEGI 391
S F E+ + +LK Y+G+ ++HNFT+ + D SA+R+I+ F D + E
Sbjct: 217 SSFRISTEKLEGVRELLKKYIGTRSYHNFTSGKRQGDESAKRHILDFRIQGDPFICNEW- 275
Query: 392 DFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLD 451
++++ VVGQSFM+HQIRKM+GL +A N E A Q+ +VP AP GL L
Sbjct: 276 EYVELRVVGQSFMIHQIRKMVGLIIARAGNHCQDDHWERAFQRPFE-DVPKAPGNGLVLR 334
Query: 452 ECIFASYNKKW 462
+ + YNK +
Sbjct: 335 QVHYDVYNKDY 345
>gi|336381199|gb|EGO22351.1| hypothetical protein SERLADRAFT_473077 [Serpula lacrymans var.
lacrymans S7.9]
Length = 421
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 3/112 (2%)
Query: 76 MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCI 135
MQ P +TIEG L AL +GAVS+ + +P + R+ARTD GV A G +VS +
Sbjct: 1 MQIQPDVRTIEGVLFGALVRAGAVSQDNADDPVKVSLGRAARTDAGVHAAGNLVSMKLIT 60
Query: 136 DPPG---LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
PG +V R+N LP +IR++G+ RV SFNA+ CD R+Y Y P + L
Sbjct: 61 TIPGVNDIVARINEELPPEIRLWGHVRVQNSFNARMSCDSRKYTYFFPSYLL 112
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
+R + Y G+HNFHNFT + D S +R++ G +++ GQSF
Sbjct: 172 ERLRLTVHKYEGTHNFHNFTVGREFGDRSNQRHMKKIEISEPAVYGGTEWISVLFHGQSF 231
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
MLHQ+RKM+ V R P +I+ L + +P P +GL L+ IF SYN+K
Sbjct: 232 MLHQVRKMMAALVLSCRTDTPDQVID-ELYGPRTVFIPKMPALGLLLEYPIFESYNRK 288
>gi|51235381|gb|AAT98576.1| tRNA pseudouridine synthase [Pneumocystis carinii]
Length = 227
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Query: 79 NPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPP 138
N +TIEGDL A +G ++E + +P++ R+ARTD+GV A V+S + I+ P
Sbjct: 1 NDPNRTIEGDLFRAFVDTGGIAEMNADDPKKSSLNRAARTDRGVHAACNVLSLKLIIEQP 60
Query: 139 GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMAS 198
L+ER+N LP IR++G R SFN + FC+ R Y YL+P + + +
Sbjct: 61 NLLERINEALPETIRVWGISRTLKSFNPRTFCEARIYEYLVPSYVFIPPYPMTQ--LAQR 118
Query: 199 LGSGNELVKCLECSE 213
+ E++ C+E SE
Sbjct: 119 ITKHREMINCIENSE 133
>gi|268568248|ref|XP_002647980.1| C. briggsae CBR-PUS-1 protein [Caenorhabditis briggsae]
Length = 437
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 7/143 (4%)
Query: 331 LKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVV---- 386
L + F +E N IL Y G+HNF N+T + +D S+ RYI+SF
Sbjct: 167 LTNAAFRISKETLAEVNDILSIYKGTHNFFNYTAKRAYDDMSSNRYIVSFECKEPFLFRD 226
Query: 387 --NVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAP 444
E ++F++ V GQSF+LHQIRKM+G+ + VVR +S I+ + + +++P AP
Sbjct: 227 EFRKEDVEFIQIVVKGQSFVLHQIRKMVGMVITVVRELHLKSAIQRSFEGQ-RMDIPMAP 285
Query: 445 EVGLYLDECIFASYNKKWKDSHE 467
+GL L+ + SY+KK HE
Sbjct: 286 GLGLLLERTHYDSYDKKHSKDHE 308
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 45 AAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDR 104
+ G K+ K+ K A+ Y G Y GMQ TIE L EA+ +G ++ R
Sbjct: 18 SGGVHKEAKKPRVKQAKYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMEKAGWITAAQR 77
Query: 105 GNPRRYDWARSARTDKGVSAVGQVVSG-------RFCIDPPGLVERLNSNLPTQIRIFGY 157
P + + R+ARTD+ VSA Q+ ++ +D PG+ LN+ LP IR+FG
Sbjct: 78 EKPFDFFFQRAARTDRAVSAARQMCGMQLPRDDEKYKVDGPGI---LNNLLPNDIRVFGM 134
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFAL 184
KR F+ +K CD R Y Y P F
Sbjct: 135 KRTINFFHPQKQCDYRTYSYTCPTFVF 161
>gi|407850015|gb|EKG04565.1| hypothetical protein TCSYLVIO_004376 [Trypanosoma cruzi]
Length = 573
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 149/350 (42%), Gaps = 34/350 (9%)
Query: 59 RRKIAIFFAYCGVGYQGMQKN--PGAKTIEGDLEEALFHSGAVSERDRGNPR---RYDWA 113
+RK+AI F Y G Y G+Q N PG T+E +L AL +G +S+ + + + +W
Sbjct: 38 KRKVAIIFGYVGERYCGLQWNHLPGYPTVEEELLRALHRTGMISKENYEQEKVQQKLNWE 97
Query: 114 RSARTDKGVSAVGQVVSGRFCI----------DPPGLVERLNSNLPTQIRIFGYKRVTAS 163
R++RTDKGV A+ V+S + DP L + LP I ++ VT S
Sbjct: 98 RASRTDKGVHALRNVISLNVMLPYAKGSTTEYDPQEARRILMTVLPHDIVVYEIVPVTRS 157
Query: 164 FNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMG 223
FNA C R Y Y LP FAL S R+ SL ++ E G + G
Sbjct: 158 FNAYMLCGARTYEYYLPTFALMSLDEYSRDYFPPSLAPVRPTLE-----EVGFTGVASEG 212
Query: 224 KRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSE 283
+ + PS + + + ST +G N N +V K E E E
Sbjct: 213 PKATEGETPSFAPLGTKRPREVEENGESTGDG---NDNANTVAGGKVTCEEHEREEVVEE 269
Query: 284 SVNETLVESRTS-ETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEE 342
+ + R S ETVQ + D + + ++ R++ + S + E+
Sbjct: 270 RDGQQCIGGRNSNETVQKFH-------DGRFEKLLIF--RTIPAV-AMRHVSQYRLSPEQ 319
Query: 343 KKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGID 392
+ I + Y G++++HNFT +A DPS RY+ S VE D
Sbjct: 320 LEHARNIFRLYEGTYSYHNFTPGGRASDPSCMRYVTSVTVGDPFLVEPTD 369
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCA----PQSLIETALQKDVNINVPTAPE 445
G++ ++ E+ GQSFML+QIRKMIG AV+ CA PQ L + L K V VP AP
Sbjct: 433 GLEVVRIELHGQSFMLNQIRKMIG---AVISICAAGLSPQYLRDHLLNKAVRCGVPMAPA 489
Query: 446 VGLYLDECIFASYNKK 461
GL+L F YN +
Sbjct: 490 NGLFLSYLDFQRYNYR 505
>gi|341894021|gb|EGT49956.1| CBN-PUS-1 protein [Caenorhabditis brenneri]
Length = 431
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 78/128 (60%), Gaps = 9/128 (7%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGA-------DSVVNVEGIDFLKCEVV 399
N IL Y G+HNF N+T + +D S+ RYI+SF D N E ++F++ V
Sbjct: 185 NDILSIYKGTHNFFNYTAKRAYDDMSSNRYIVSFECKKPFLFRDEFRN-EDVEFVQITVK 243
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
GQSF+LHQIRKM+G+ + VVR +S I+ + + +++P AP +GL L++ + SY+
Sbjct: 244 GQSFVLHQIRKMVGMVICVVRELHLKSAIQRSFEGQ-RMDIPMAPGLGLLLEQTHYDSYD 302
Query: 460 KKWKDSHE 467
+K SHE
Sbjct: 303 RKNSKSHE 310
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 77/178 (43%), Gaps = 10/178 (5%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
K K A+ Y G Y GMQ TIE L EA+ +G ++ R P + + R+A
Sbjct: 32 VKNAKYAMLLGYQGKKYFGMQLQKDLPTIESKLLEAMEKAGWITPAQRDKPFDFFFQRAA 91
Query: 117 RTDKGVSAVGQVVS-------GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKF 169
RTD+ VSAV Q+ ++ + G+ LN LP IR+FG +R T F+ +K
Sbjct: 92 RTDRAVSAVRQMCGMQLPRDDAKYQTEGAGI---LNDLLPADIRVFGMRRTTNFFHPQKQ 148
Query: 170 CDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTY 227
CD R Y Y P F + S S + E+ L + KR Y
Sbjct: 149 CDYRTYSYTCPSFVFAKPTELTNASYRISPETLAEVNDILSIYKGTHNFFNYTAKRAY 206
>gi|348689580|gb|EGZ29394.1| hypothetical protein PHYSODRAFT_358674 [Phytophthora sojae]
Length = 935
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 11/129 (8%)
Query: 70 GVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVV 129
G GY G+Q N +TIE ++ A+F +GA+ E + + + DWARS+RTDKGV A V
Sbjct: 2 GTGYHGLQLNDNVETIEDEIRRAIFEAGAMRESNFEDLGKIDWARSSRTDKGVHAGCIVF 61
Query: 130 SGRFCIDPP-----------GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
SG+ ID GL E LN++LP IR+F RV F+A+K C R Y Y
Sbjct: 62 SGKLLIDEENKVDPVSGRVRGLTEALNASLPDNIRVFSCTRVNKRFSARKNCVLREYEYF 121
Query: 179 LPVFALDSS 187
+P+ L S
Sbjct: 122 MPLSFLKDS 130
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 374 RRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQ 433
RR I S V + G L+ +VGQ+F+L+QIR M+G A+AV + + AL
Sbjct: 241 RRSIYSCSGSLVPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVAFDAALL 300
Query: 434 KDVNINVPTAPEVGLYL 450
+ + VP AP GL L
Sbjct: 301 TNRIVRVPIAPAEGLVL 317
>gi|393910108|gb|EJD75741.1| tRNA pseudouridylate synthase Lsp1 [Loa loa]
gi|393910109|gb|EJD75742.1| tRNA pseudouridylate synthase Lsp1, variant [Loa loa]
Length = 517
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 87/178 (48%), Gaps = 8/178 (4%)
Query: 59 RRK---IAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
RRK A+ AY G Y GMQ T+EG+L +A+ G +SE D +P R+ + R+
Sbjct: 98 RRKEYSYALLLAYQGKKYNGMQVQKDFPTVEGELFKAMAKCGYISEDDILSPVRFAFQRA 157
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLV-----ERLNSNLPTQIRIFGYKRVTASFNAKKFC 170
ARTD+ VSA Q+ S R + ++LN+ LP +IR+ G +R T SF A K C
Sbjct: 158 ARTDRSVSAARQMCSMRLAPENHEYFLKTASDKLNAQLPEEIRVMGVRRATRSFKAHKNC 217
Query: 171 DQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQ 228
D+R Y Y LP +A + + S S EL L + RTY+
Sbjct: 218 DKRTYSYTLPSYAFARADELTNSAFRISETSVTELNDLLALYKGTHNFFNYTSGRTYE 275
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 7/144 (4%)
Query: 331 LKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF--GADSVV-- 386
L S F E N +L Y G+HNF N+T+ ED S RYI F G +V
Sbjct: 237 LTNSAFRISETSVTELNDLLALYKGTHNFFNYTSGRTYEDRSNMRYIHDFKCGPTQLVED 296
Query: 387 NVEG--IDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAP 444
V G ++F+ V GQSFMLHQIRKMIG+ VA R ++ +E + + ++VP AP
Sbjct: 297 KVRGGMVEFISLYVTGQSFMLHQIRKMIGMTVATFRGLCGKTELENTFRSE-RMDVPKAP 355
Query: 445 EVGLYLDECIFASYNKKWKDSHEE 468
+GL LD+ + Y++ ++ +H++
Sbjct: 356 GLGLVLDKVHYERYDRWYEKTHQK 379
>gi|399217632|emb|CCF74519.1| unnamed protein product [Babesia microti strain RI]
Length = 455
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 2/120 (1%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVV 399
E++ I YVGSHNFHNF++R +P++ RYI S V +E +F++ +
Sbjct: 239 EQDIVSLETIFGDYVGSHNFHNFSSRINPLNPASYRYINSIKVSRVECME--NFVRVSIQ 296
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
GQSF+ +QIRKMI +A+ V R AP++ I+ L K ++NV TAP GL+L F +YN
Sbjct: 297 GQSFLFNQIRKMIAVAIEVFRGSAPKNAIKYCLNKLHSVNVNTAPAQGLFLHHPNFDTYN 356
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 20/175 (11%)
Query: 29 MSATSTSDDERDLIPAAAGADST---TKRQLCK--------RRKIAIFFAYCGVGYQGMQ 77
SA + S +++ ++ DST T +L K + K A++ Y G GY G Q
Sbjct: 7 FSAKNFSRKRKNVTKHSSVGDSTIQSTNNELFKISNGINAPKTKYAMYLGYLGTGYYGFQ 66
Query: 78 KNPG--------AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVV 129
K +TIEG LE AL S A+ + ++ W+++ARTDKGV A VV
Sbjct: 67 KQIAFGDRVEETVETIEGTLERALIASNAIYPEFKHRLQKLGWSKAARTDKGVHAACMVV 126
Query: 130 SGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
R I ++ N NLP I + RVT F+A+ C R Y Y+ P + L
Sbjct: 127 GCRMNI-ADDFLKIFNENLPGNIICYDVLRVTKGFDARALCSYRNYEYIFPGYLL 180
>gi|339248313|ref|XP_003375790.1| tRNA pseudouridine synthase A [Trichinella spiralis]
gi|316970789|gb|EFV54664.1| tRNA pseudouridine synthase A [Trichinella spiralis]
Length = 390
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 74/124 (59%), Gaps = 4/124 (3%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLH 406
NRIL YVG+HNF+NFT+ +D S +R+II I++L ++ GQSF++H
Sbjct: 191 NRILMQYVGTHNFYNFTSGKLHKDESCKRFIIRCECGKRFLYNNIEYLTVDIKGQSFLIH 250
Query: 407 QIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDEC---IFASYNKKWK 463
QIRKMIG ++++R L + Q + I VP AP +GL L+E + YNK+++
Sbjct: 251 QIRKMIGFCISLIRGDLDPCLQQKVWQNE-RIKVPKAPSLGLVLEEVRMPHYEHYNKRFQ 309
Query: 464 DSHE 467
+H+
Sbjct: 310 ATHQ 313
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 7/136 (5%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
KR K A+F AY G Y GMQ NP T+E + EAL ++ P + + R+AR
Sbjct: 50 KRYKYAMFLAYRGKNYHGMQVNPNVPTVEKYIMEALQKLNLITVDQVVQPSLFKFQRAAR 109
Query: 118 TDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
TDKGVSA Q+ S + P + + N + + G +R T SF++KK+CD R Y Y
Sbjct: 110 TDKGVSATKQICS----LLLPTIEGKENDTVNL---LNGLQRATKSFDSKKWCDYRSYSY 162
Query: 178 LLPVFALDSSSHRDRE 193
LP + S +R+
Sbjct: 163 TLPSYCFRHQSDLERD 178
>gi|71664275|ref|XP_819120.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70884407|gb|EAN97269.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 621
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 150/350 (42%), Gaps = 34/350 (9%)
Query: 59 RRKIAIFFAYCGVGYQGMQKN--PGAKTIEGDLEEALFHSGAVSERDRGNPR---RYDWA 113
+RK+AI F Y G Y G+Q N PG T+E +L AL +G +S+ + + + +W
Sbjct: 86 KRKVAIIFGYVGERYCGLQWNHLPGYPTVEEELLRALHRTGMISKENYEQEKVQQKLNWE 145
Query: 114 RSARTDKGVSAVGQVVSGRFCI----------DPPGLVERLNSNLPTQIRIFGYKRVTAS 163
R++RTDKGV A+ V+S + DP L + LP I ++ VT S
Sbjct: 146 RASRTDKGVHALRNVISLNVMLPYAKGSTTEYDPQEARRILMTVLPHDIVVYEIVPVTRS 205
Query: 164 FNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMG 223
FNA C R Y Y LP FAL S R+ SL ++ E G + G
Sbjct: 206 FNAYMLCGARTYEYYLPTFALMSLDEYSRDYFPPSLAPARPTLE-----EVGFTGVASEG 260
Query: 224 KRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSE 283
R + PS + + + ST +G + N +V K E E E
Sbjct: 261 PRATEDETPSFAPLGTKRPREVEENGESTGDG---SDNANTVGGGKVTCEEHEREEVVEE 317
Query: 284 SVNETLVESRTS-ETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEE 342
+ + R S ETVQ + + + + ++ R++ + + S + E+
Sbjct: 318 RDGQQCIGGRNSNETVQKFH-------EGRFEKLLIF--RTIPA-DAMRHVSQYRLSSEQ 367
Query: 343 KKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGID 392
+ I + Y G++++HNFT +A DPS RY+ S VE D
Sbjct: 368 LEHARNIFRLYEGTYSYHNFTPGGRASDPSCMRYVTSVTVGDPFLVEPTD 417
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCA----PQSLIETALQKDVNINVPTAPE 445
G++ ++ E+ GQSFML+QIRKMIG AV+ CA PQ L + L K V VP AP
Sbjct: 481 GLEVVRIELHGQSFMLNQIRKMIG---AVISICAAGLSPQYLRDHLLNKAVRCGVPMAPA 537
Query: 446 VGLYLDECIFASYNKK 461
GL+L F YN +
Sbjct: 538 NGLFLSYLDFQRYNYR 553
>gi|301105176|ref|XP_002901672.1| ubiquitin fusion degradation protein, putative [Phytophthora
infestans T30-4]
gi|262100676|gb|EEY58728.1| ubiquitin fusion degradation protein, putative [Phytophthora
infestans T30-4]
Length = 840
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 72/129 (55%), Gaps = 11/129 (8%)
Query: 70 GVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVV 129
G GY G+Q N KTIE D+ A+F +GA+ E + + + DWARS+RTDKGV A V
Sbjct: 2 GTGYHGLQLNDNVKTIEDDIRNAIFQAGAMRESNFEDLGKIDWARSSRTDKGVHAGCIVF 61
Query: 130 SGRFCIDPPG-----------LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
SG+ ID L E LN++LP IR+F RV+ F+A+K C R Y Y
Sbjct: 62 SGKLLIDEENKVDPISGRVHELKEALNASLPENIRVFSCTRVSKRFSARKNCVLREYEYF 121
Query: 179 LPVFALDSS 187
+P+ L S
Sbjct: 122 MPLSFLRGS 130
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%)
Query: 356 SHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLA 415
S F + T+ P RR I S V + G L+ +VGQ+F+L+QIR M+G A
Sbjct: 217 SSQFEDEEELTRKLLPRHRRSIYSCSGSLVPDFCGEPHLRIHIVGQAFLLNQIRCMVGGA 276
Query: 416 VAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
+AV + + AL + + VP AP GL L
Sbjct: 277 LAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVL 311
>gi|297745794|emb|CBI15850.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 12/173 (6%)
Query: 50 STTKRQLCKRRKIAIFFAYCGVGYQGMQKN---PGAKTIEGDLEEALFHSGAVSERDRGN 106
S K + +++K+ + Y G Y+G+Q TIEG+LE A+F +G + + + GN
Sbjct: 53 SVQKWESFRKKKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGIRDSNYGN 112
Query: 107 PRRYDWARSARTDKGVSAVGQVVSGRFCI-------DPPG--LVERLNSNLPTQIRIFGY 157
+ W RS+RTDKGV ++ ++S + I DP G L +N +LP I++F
Sbjct: 113 LHKIGWDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSI 172
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLE 210
SF+A++ CD RRY YLLP + S+ + + N+++ E
Sbjct: 173 LPSQRSFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFE 225
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLY 449
G+D+++ + G+SFMLHQIRKM+G A+AV R P+ ++ +L K I +P AP L
Sbjct: 340 GLDYVELSICGESFMLHQIRKMVGTAIAVKRELLPRDILTLSLTKFSRIVLPLAPSEVLI 399
Query: 450 L 450
L
Sbjct: 400 L 400
>gi|401887159|gb|EJT51163.1| pseudouridylate synthase [Trichosporon asahii var. asahii CBS 2479]
gi|406694962|gb|EKC98277.1| pseudouridylate synthase [Trichosporon asahii var. asahii CBS 8904]
Length = 358
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
+RF ++ Y G+HNFHN+T +D + +RY+ + I+++ + GQSF
Sbjct: 126 QRFRNMIAEYQGTHNFHNYTVGKPFKDATVKRYMKTLDVRDPAVYGDIEWISVRIHGQSF 185
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
MLHQIRKM+ LA+ R P +I + + +++P AP +GL L++ F +YN K
Sbjct: 186 MLHQIRKMMSLAILATRTGTPPKIIPATFE-NKRVHIPKAPPLGLLLEQPQFKTYNDK 242
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 133 FCIDPP------GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDS 186
+DPP L E +NS LP QIR++G+ R SF A+ CD R Y YLLP + L
Sbjct: 1 MILDPPLPEGFSSLTEYVNSFLPAQIRMWGFVRAMKSFQARTACDSRVYEYLLPSYCLLP 60
Query: 187 SSHRD 191
+ D
Sbjct: 61 PAKTD 65
>gi|312091557|ref|XP_003147023.1| hypothetical protein LOAG_11456 [Loa loa]
Length = 236
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 59 RRK---IAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
RRK A+ AY G Y GMQ T+EG+L +A+ G +SE D +P R+ + R+
Sbjct: 98 RRKEYSYALLLAYQGKKYNGMQVQKDFPTVEGELFKAMAKCGYISEDDILSPVRFAFQRA 157
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLV-----ERLNSNLPTQIRIFGYKRVTASFNAKKFC 170
ARTD+ VSA Q+ S R + ++LN+ LP +IR+ G +R T SF A K C
Sbjct: 158 ARTDRSVSAARQMCSMRLAPENHEYFLKTASDKLNAQLPEEIRVMGVRRATRSFKAHKNC 217
Query: 171 DQRRYVYLLPVFAL 184
D+R Y Y LP +A
Sbjct: 218 DKRTYSYTLPSYAF 231
>gi|440794131|gb|ELR15302.1| tRNA pseudouridine synthase A, putative [Acanthamoeba castellanii
str. Neff]
Length = 324
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 81/152 (53%), Gaps = 29/152 (19%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
+ N L+ + G++NF N+T R D SA+RYII F V+G+DF++ E+ GQSFM
Sbjct: 86 KLNEYLEVFKGTNNFFNYTIRMDKNDASAKRYIIGFKCSGPFTVDGVDFVRFEIQGQSFM 145
Query: 405 LHQIRKMIGLA------VAVVRN---------CAPQS-------LIETALQKDV------ 436
LHQIR+MIG+A A++R+ CA LI+ L K+V
Sbjct: 146 LHQIRRMIGIATIRDHCTALLRHVLDIQSSQLCAHVWYLGMIVFLIKRNLPKEVLNATFV 205
Query: 437 -NINVPTAPEVGLYLDECIFASYNKKWKDSHE 467
VPTAP GL L +C++ YN+ S+E
Sbjct: 206 RKAPVPTAPSEGLLLQQCVYKVYNEGKGRSYE 237
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 134 CIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+DPPG+++R+N+NLP IR+F +R T F++K D R Y YLLP + L
Sbjct: 2 VLDPPGVLDRINANLPDDIRVFAIRRTTGGFDSKNSVDSRIYEYLLPGYIL 52
>gi|19113277|ref|NP_596485.1| tRNA pseudouridine synthase Pus2 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74676179|sp|O94295.1|PUS2_SCHPO RecName: Full=tRNA pseudouridine synthase 2; AltName: Full=tRNA
pseudouridylate synthase 2; AltName: Full=tRNA-uridine
isomerase 2
gi|3850107|emb|CAA21896.1| tRNA pseudouridine synthase Pus2 (predicted) [Schizosaccharomyces
pombe]
Length = 451
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Query: 330 LLKGSGFCY-----GEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADS 384
L + +CY E+ K ++LK Y G HNFHNFT + PS R+I S +
Sbjct: 256 LKQAEYYCYMNYRIKEDRLKVLQQLLKKYEGRHNFHNFTVTDDSTSPSNYRFIESVTCGT 315
Query: 385 VVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAP 444
E +++ + G SFML+QIRKM+ + ++R+CAP LI+ A ++ +N+ +P
Sbjct: 316 PFVYENWEWIPVTIKGNSFMLNQIRKMMAHVLMIIRSCAPTGLIDKAFDPNITMNISKSP 375
Query: 445 EVGLYLDECIFASYNKKWKDSHEE 468
L L + F+SYN D E+
Sbjct: 376 GHVLLLKDIKFSSYNDSVTDGLEK 399
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 81/171 (47%), Gaps = 20/171 (11%)
Query: 29 MSATSTSDDERDLIPAAAGADSTTKRQLCKRRKI-----------AIFFAYCGVGYQGMQ 77
M++ S ++++ IPA + +L KR KI I Y G GY G+Q
Sbjct: 1 MTSISKRKNQQEHIPA----EDLETPKLPKREKIEGTKESNKVRIIILLGYSGYGYHGIQ 56
Query: 78 KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDP 137
N KTIEGD+ L G + + + + AR+ARTDKGV + ++S +D
Sbjct: 57 INNPLKTIEGDVVAVLKKLGYL-KTNNIDAEHLCIARAARTDKGVHTLRNLISLNLFVDK 115
Query: 138 PG----LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
P L LN L +QIR++ FN + C+ R Y YL+P FAL
Sbjct: 116 PLDISLLKTELNEALCSQIRVWSVFPAPKYFNPRISCESRTYEYLIPSFAL 166
>gi|118349886|ref|XP_001008224.1| tRNA pseudouridine synthase family protein [Tetrahymena
thermophila]
gi|89289991|gb|EAR87979.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila
SB210]
Length = 484
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVE-GIDFLKCEVVGQS 402
+R + + + G+HN+HN+T + KA+DP RYI+ + + N + G+ F++ +VGQS
Sbjct: 303 QRVSTLADKFKGTHNYHNYTRQMKAKDPRCMRYILDMKTELITNPQNGMKFIRFTLVGQS 362
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
F+ HQIRKM+G+ +++ P + ++++ +V + + AP GL+L+ F SYNKK
Sbjct: 363 FVYHQIRKMMGMICMMIQEDYPDNFMDSSFFHNV-MRIWLAPAHGLFLNRMRFDSYNKK 420
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 52 TKRQLCKRRKIAIFFAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSGAVSERDRGNPRR 109
TKR K K+AIFF Y G GY G Q K+ KTIE L E L S +SE G ++
Sbjct: 4 TKRNFFKI-KVAIFFGYNGKGYHGSQSQKDQNIKTIEKSLFEGLIDSKLISETHMGELKK 62
Query: 110 YDWARSARTDKGVSAVGQVVSGRFCIDPPGLVE----RLNSNLPTQIR 153
W R ARTDKGV A+ V+ + I L+ R++ P +I+
Sbjct: 63 AGWGRGARTDKGVHALCNGVNVKLAISEEYLMRGSPLRMDDKNPEEIQ 110
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 132 RFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVF 182
R ID ++ LNSNLP IR K+V+ F+ + C R Y YL+P+F
Sbjct: 229 RKHIDIDKIINALNSNLPADIRCVSIKQVSRKFDIRTHCKYRVYEYLMPLF 279
>gi|367014979|ref|XP_003681989.1| hypothetical protein TDEL_0E05350 [Torulaspora delbrueckii]
gi|359749650|emb|CCE92778.1| hypothetical protein TDEL_0E05350 [Torulaspora delbrueckii]
Length = 431
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 68/109 (62%)
Query: 76 MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCI 135
MQ NP TIE +L A +GA+S+ + + ++ + R+ARTDKGV A G ++S + I
Sbjct: 1 MQYNPPNPTIEAELFRAFVEAGAISKANSNDLKKNGFMRAARTDKGVHAGGNLISLKLII 60
Query: 136 DPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+ P + E++N LP IRI+ +RV +F+ +K C R Y YLLP ++L
Sbjct: 61 EDPQIKEKINEKLPEGIRIWDIERVNKAFDCRKMCGSRWYEYLLPTYSL 109
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDF 393
F +++ K+F+ +K Y+G+HNFHNFT ++ SA R++ I V+ ++
Sbjct: 197 FRISQDKLKKFDATMKQYLGAHNFHNFTLGKDFKESSAIRFMKEIKVSEPFVIGDAKTEW 256
Query: 394 LKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDEC 453
+ ++ GQSFMLHQIRKMI +A + R P I A + +N+P AP +GL L+
Sbjct: 257 ISIKIHGQSFMLHQIRKMISMATLITRCGCPIERISQAYGQQ-KLNIPKAPALGLLLEAP 315
Query: 454 IFASYN 459
+F YN
Sbjct: 316 VFEGYN 321
>gi|342183994|emb|CCC93475.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 553
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 151/359 (42%), Gaps = 55/359 (15%)
Query: 44 AAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKN--PGAKTIEGDLEEALFHSGAVSE 101
A+ A S+ KR +RK+AI F Y G Y G+Q N P T+E +L AL + +SE
Sbjct: 8 GASAATSSGKR---PKRKVAIIFGYIGERYCGLQWNHLPNYPTVEEELLRALHRTNMISE 64
Query: 102 RDRGNPR---RYDWARSARTDKGVSAVGQVVSGRFCI----------DPPGLVERLNSNL 148
+ + + +W R++RTDKGV A+ V+S + D L S L
Sbjct: 65 ENYSQEKVQQKLNWERASRTDKGVHALRNVISLNLMLPHAKGSASEYDTVEAKRLLMSVL 124
Query: 149 PTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKC 208
P I ++ VT SFNA C R Y Y +P FA S+ + S+
Sbjct: 125 PPDIIVYEIIPVTRSFNAYMMCGARTYEYYIPTFAFMSNREYCTKYFPPSIAPSQ----- 179
Query: 209 LECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKV-DTVVSTCNGDRHNTNLESVES 267
P+ +E LN + + ++ V+ G R +
Sbjct: 180 -----------------------PTLEEVGFLNHKTNIGESKVAHGEGIRVLGKKRPRDD 216
Query: 268 NKTISESVMVENANSE-----SVNETLVES-RTSETVQNE-NTDLSLDLDSKNDSKVMAE 320
+ +V VEN + E E L++S +T E N+D + + M
Sbjct: 217 GGNVESAVAVENVSGEDPKPIDAGEELLKSCPGPDTPDGESNSDETPRKFHDGLFEKMLV 276
Query: 321 ERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIIS 379
R++ E+ + + + + E+ + RI Y G+H++HNFT KA DPS+ RYI S
Sbjct: 277 FRTIP-EDTMREVARYRITSEDLEETRRIFHLYEGTHSYHNFTPGGKASDPSSVRYITS 334
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAV-VRNCAPQSLIETALQKDVNINVPTAPEVGL 448
G++ ++ E+ GQSF+ +QIRKMIG ++ V P L + L + V P AP GL
Sbjct: 413 GLEVVRIELNGQSFLFNQIRKMIGAVSSMRVAGLPPAYLRDHFLNRSVRCGTPMAPANGL 472
Query: 449 YLDECIFASYNKK 461
+L F YN +
Sbjct: 473 FLSYLDFQRYNYR 485
>gi|255088754|ref|XP_002506299.1| predicted protein [Micromonas sp. RCC299]
gi|226521571|gb|ACO67557.1| predicted protein [Micromonas sp. RCC299]
Length = 601
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 16/159 (10%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKN---PGAKTIEGDLEEALFHSGAV---SERDRGNPRRYD 111
K++ +A+ Y G GY G N P T++ LE+ALF +G + + R R R
Sbjct: 109 KKKPVALLMGYVGAGYSGNTTNASLPRGSTVDDVLEDALFDAGCILLSNYRSRSL-SRLK 167
Query: 112 WARSARTDKGVSAVGQVVSGRFCID-------PPG--LVERLNSNLPTQIRIFGYKRVTA 162
W+RS+RTDKGVS++ VVS R +D P G + +N +LP +R+FG
Sbjct: 168 WSRSSRTDKGVSSLATVVSARLEVDVGVWENDPEGTRIAADINRHLPNHVRVFGAYSTPK 227
Query: 163 SFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGS 201
SF A++ C +R Y YLLP L + + +R++ +A G+
Sbjct: 228 SFQARRACVRRTYDYLLPATCLGLNVNGERDAALAWPGA 266
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%)
Query: 393 FLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDE 452
F++ V G SFML+QIRKMI AVA P LI +L + I P AP LYL +
Sbjct: 400 FVRVTVNGDSFMLYQIRKMIATAVAAAIGHFPLELIPASLTRPARIATPIAPASTLYLVD 459
Query: 453 CIFASYNKK 461
F S+ +
Sbjct: 460 AEFMSFRPR 468
>gi|443913214|gb|ELU36078.1| tRNA pseudouridine synthase domain-containing protein [Rhizoctonia
solani AG-1 IA]
Length = 226
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 8/139 (5%)
Query: 53 KRQLCKRRKIAIFFAYCGVGYQGM----QKNPGAKTIEGDLEEALFHSGAVSERDRGNPR 108
KRQ RRK+ G G+ + Q++ G TIE L A+ +GAVSE + +P
Sbjct: 27 KRQGYPRRKLQCLLDSVGRGWPTIETLRQRDAGTNTIENTLFNAMVKAGAVSEDNSDDPV 86
Query: 109 RYDWARSARTDKGVSAVGQVVSGRFCIDP---PGLVERLNSNLPTQIRIFGYKRVTASFN 165
+ + R+ARTD GV A G VVS + +P P LV +LN LP +IR++ + R T +FN
Sbjct: 87 KVNLQRAARTDAGVHAAGNVVSLKMITEPPDTPDLVAKLNELLPPEIRVWTFVRSTNAFN 146
Query: 166 AKKFCDQRRYVYLLPVFAL 184
++ CD R Y Y+ P AL
Sbjct: 147 SRA-CDSRVYEYMFPSSAL 164
>gi|168042339|ref|XP_001773646.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675034|gb|EDQ61534.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 12/138 (8%)
Query: 59 RRKIAIFFAYCGVGYQGMQ--KNPG-AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
++K+A++ Y G Y+G+Q + PG A+TIE +LE A+F +G + E + GN + W RS
Sbjct: 1 KKKVAMWLGYVGTRYKGLQIQRGPGSAQTIEEELELAIFKAGGMIESNFGNLSKISWTRS 60
Query: 116 ARTDKGVSAVGQVVSGRFCI---------DPPGLVERLNSNLPTQIRIFGYKRVTASFNA 166
+RTDKGV ++ V+S + + D L + +N +L IR+FG VT SF A
Sbjct: 61 SRTDKGVHSLCTVISMKMEVPEAAWVNDMDGFALADNINFHLSPFIRVFGITPVTRSFRA 120
Query: 167 KKFCDQRRYVYLLPVFAL 184
+ C R Y YLLP L
Sbjct: 121 RHDCCTRTYDYLLPAAIL 138
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%)
Query: 375 RYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQK 434
R +ISF F++ + G SFM+HQIRKMIG A+AV P +I +L +
Sbjct: 263 RKVISFNCGMPETFGEAQFIRISITGSSFMVHQIRKMIGTAIAVFHGLLPGDVIPISLAR 322
Query: 435 DVNINVPTAPEVGLYL 450
I +P AP GL L
Sbjct: 323 HSRIVLPLAPPDGLIL 338
>gi|15227735|ref|NP_180591.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana]
gi|3914486|sp|O22928.1|PUSH_ARATH RecName: Full=Putative tRNA pseudouridine synthase; AltName:
Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|2347206|gb|AAC16945.1| putative pseudouridine synthase [Arabidopsis thaliana]
gi|330253276|gb|AEC08370.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana]
Length = 510
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 12/170 (7%)
Query: 53 KRQLCKRRKIAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNPRR 109
K + +++K+ I Y G Y+G+Q +P KTIEG+LE A++ +G + + + G+ +
Sbjct: 56 KWESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLHK 115
Query: 110 YDWARSARTDKGVSAVGQVVSGRFCI-------DPPG--LVERLNSNLPTQIRIFGYKRV 160
WARS+RTDKGV ++ +S + I DP G L + ++ +LP IR+F
Sbjct: 116 IGWARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLPS 175
Query: 161 TASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLE 210
F+ ++ C R+Y YLLPV L + + + + NE++K E
Sbjct: 176 NRRFDPRRECTLRKYSYLLPVDVLGIKNSFTSDEIDYHITDFNEILKEFE 225
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 387 NVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEV 446
N G F++ + G+SFMLHQIRKMIG AVAV R P+ +I +L K I +P AP
Sbjct: 337 NSLGFGFVEISIWGESFMLHQIRKMIGTAVAVKRELLPRDIIRLSLNKFTRIVLPLAPSE 396
Query: 447 GLYL 450
L L
Sbjct: 397 VLIL 400
>gi|218192790|gb|EEC75217.1| hypothetical protein OsI_11484 [Oryza sativa Indica Group]
Length = 722
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 12/167 (7%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKN---PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
+++++ + Y G Y+G+QK TIE LE A+F +G + E + G ++ W R
Sbjct: 70 RKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKVGWER 129
Query: 115 SARTDKGVSAVGQVVSGRFCI-------DPPG--LVERLNSNLPTQIRIFGYKRVTASFN 165
S+RTDKGV ++ ++S + I DP G L +NSNLP +R+F SF+
Sbjct: 130 SSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQRSFD 189
Query: 166 AKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECS 212
++ C R Y+YLLP + E VM L N ++K E S
Sbjct: 190 VRRECLYREYLYLLPAEIIGIKGGCSSEEVMEHLSEFNSILKGFEAS 236
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 375 RYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQK 434
R I++F + GI F++ + G SFMLHQIRKM+G +VAV R P+ +I +L K
Sbjct: 547 RDILTFSCGELQISSGIQFVELTISGVSFMLHQIRKMVGTSVAVKRGLLPKDIIALSLAK 606
Query: 435 DVNINVPTAPEVGLYLDECIFASYNKK 461
I +P AP L L + F NK+
Sbjct: 607 FSRIVLPIAPSEVLVLRDNSFCLRNKQ 633
>gi|355430068|gb|AER92594.1| putative pseudouridine synthase family protein [Linum
usitatissimum]
Length = 565
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 13/182 (7%)
Query: 41 LIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNP---GAKTIEGDLEEALFHSG 97
L+ GA S K +++K+ + Y G Y+G+QK T+E +LE A+F +G
Sbjct: 97 LLHQHLGA-SAGKWVPIRKKKVVLRVGYVGTDYRGLQKQHDEHSLSTVEAELENAIFKAG 155
Query: 98 AVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCI-------DPPG--LVERLNSNL 148
+ E + G+ + WARS+RTDKGV ++ ++ + I DP G L +NS L
Sbjct: 156 GILESNYGHLNKVAWARSSRTDKGVHSLATTITMKMEIPETAWKDDPYGIALARTVNSYL 215
Query: 149 PTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKC 208
P IRIF +F+ + C+ R+Y YLLP + SH D + + + +++
Sbjct: 216 PDSIRIFSILPAQKNFDPRLECNMRKYSYLLPAEIIGIRSHSDADEISEHISDFRKILNA 275
Query: 209 LE 210
E
Sbjct: 276 FE 277
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLY 449
G +F++ + G+SFMLHQIRKM+G AVAV R+ P+ ++ +L K I +P AP L
Sbjct: 391 GYNFVEISIWGESFMLHQIRKMVGTAVAVKRDLLPRDILTLSLAKFSRIVLPLAPSEVLI 450
Query: 450 L 450
L
Sbjct: 451 L 451
>gi|426196564|gb|EKV46492.1| hypothetical protein AGABI2DRAFT_205761 [Agaricus bisporus var.
bisporus H97]
Length = 435
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 87/163 (53%), Gaps = 13/163 (7%)
Query: 80 PGAKTIEGDLEEALFHSGAVSERDRGNPRRYD----WARSARTDKGVSAVGQVVSGRFCI 135
P KTIEG L +AL +GAVS+ + +P + AR+ARTD GV A G +VS + +
Sbjct: 6 PPLKTIEGTLFKALVEAGAVSQDNANDPVKAKSFVALARAARTDAGVHAAGNIVSLKMIM 65
Query: 136 DPPG---LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL-----DSS 187
PG LV R+N LP +IR++GY R SFNA+ CD R+Y Y P + L S+
Sbjct: 66 HVPGIPDLVGRVNELLPPEIRLWGYVRAQNSFNARLACDSRKYTYYFPSYLLIPPKPGSN 125
Query: 188 SHRDRESVMASLG-SGNELVKCLECSERGRKVIGVMGKRTYQL 229
HR SLG +G+ L + K + KRT+++
Sbjct: 126 LHRVLAQHAESLGHNGSILSHSFWDNPNSSKEDDMRRKRTWRV 168
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 353 YVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMI 412
++G+HNFHNFT A D S R++ S V +++ GQSFMLHQ+RKM+
Sbjct: 183 FIGTHNFHNFTVGRDASDKSNMRHMKSIEIADPVTHGDTEWVSVLFHGQSFMLHQVRKMM 242
Query: 413 GLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
V R N +P I T L K+ + +P P +GL L+E IFASYN +
Sbjct: 243 SSLVLSCRTNTSPN--IVTELYKNPDAFIPKMPSLGLLLEEPIFASYNSR 290
>gi|84997902|ref|XP_953672.1| tRNA pseudouridine synthase [Theileria annulata]
gi|65304669|emb|CAI72994.1| tRNA pseudouridine synthase, putative [Theileria annulata]
Length = 478
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 335 GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFL 394
GF E E R ILK Y G+HNFHNFT + K E + R+I S ++ ++ +
Sbjct: 288 GFEETEIEHSRLYEILKLYQGTHNFHNFTVKQKEEINNTSRFIHKISIKSH-KIQELEVV 346
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454
K +VGQSF+ +QIRKMI LA+ V AP++ +E +L K +N+ P GL L
Sbjct: 347 KILIVGQSFLYNQIRKMISLALQVYLGIAPKNSVEFSLNKSHFLNINLVPSEGLILHHPY 406
Query: 455 FASYN 459
F SYN
Sbjct: 407 FDSYN 411
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 76/181 (41%), Gaps = 48/181 (26%)
Query: 52 TKRQLCKRRKIAIFFAYCGVGYQGMQKN--------PGAKTIEGDLEEALFHSGAVSERD 103
KR + K I F Y G GY G QK KT+EG LE LF GA++E
Sbjct: 61 VKRVHAPKTKYVIAFGYLGTGYHGYQKQVEYKTGEMDKVKTVEGTLENCLFRIGAINEAF 120
Query: 104 RGNPRRYDWARSARTDKGVSAVGQVVSGRFCI---DPP---------------------- 138
R + ++ +RTDKGV A + GRF I D P
Sbjct: 121 RNMTHKLQMSKCSRTDKGVHAACTYLGGRFNIEMEDVPEDHVPQVNNHSEINNSSKPDTS 180
Query: 139 ---------------GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
V+RLN+ LP IR F +RVT F+A+ C +R+Y Y++P +
Sbjct: 181 DNVELQSDGKLSKEEKFVQRLNAALPEDIRCFKIQRVTKGFDARSLCSKRKYEYIIPEWL 240
Query: 184 L 184
L
Sbjct: 241 L 241
>gi|156087442|ref|XP_001611128.1| tRNA pseudouridine synthase [Babesia bovis T2Bo]
gi|154798381|gb|EDO07560.1| tRNA pseudouridine synthase, putative [Babesia bovis]
Length = 414
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 7/116 (6%)
Query: 349 ILKHYVGSHNFHNFTTRTKAEDPSARRYIISF---GADSVVNVEGIDFLKCEVVGQSFML 405
IL Y GSH+F NFT R K E+ + +R+I G++S+ GI+ ++ + GQSF+
Sbjct: 227 ILSDYCGSHDFKNFTQRQKVEEKTTQRFIHEIKVEGSESI----GINAVRVIITGQSFLY 282
Query: 406 HQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
+QIRKMIGL AV AP+ I+ AL K +N P AP GL+L F +YN++
Sbjct: 283 NQIRKMIGLGYAVYLGVAPRCAIKFALSKWHAVNTPLAPAEGLFLHHPYFDAYNRR 338
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 66/137 (48%), Gaps = 16/137 (11%)
Query: 64 IFFAYCGVGYQGMQ-----KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
I +Y G Y G Q + G T+E + AL + A+ + N + ++++RT
Sbjct: 31 IVLSYIGTNYHGFQIQRDAGDDGIDTVEARVINALVTTDAIHGSHKNNLGKLQLSKASRT 90
Query: 119 DKGVSAVGQVVSGRFCID-----PPG------LVERLNSNLPTQIRIFGYKRVTASFNAK 167
DKGV A + GRF + PG LV RLN+ LP IR F RVT F A+
Sbjct: 91 DKGVHAACTYIGGRFELSHLSAGEPGISKEQCLVSRLNTVLPDDIRCFQVLRVTRGFCAR 150
Query: 168 KFCDQRRYVYLLPVFAL 184
C +R Y Y++P+ L
Sbjct: 151 SMCSKRMYEYVIPLSLL 167
>gi|308507857|ref|XP_003116112.1| CRE-PUS-1 protein [Caenorhabditis remanei]
gi|308251056|gb|EFO95008.1| CRE-PUS-1 protein [Caenorhabditis remanei]
Length = 438
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 7/143 (4%)
Query: 331 LKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVV---- 386
L S F +E N IL Y G+HNF N+T + D S+ RYI+SF
Sbjct: 167 LTNSAFRLPKETLAEVNDILSIYKGTHNFFNYTAKRAYNDMSSNRYIVSFECKEPFLFRD 226
Query: 387 --NVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAP 444
E ++F++ V GQSF+LHQIRKM+G+ + VVR +S I+ + + +++P AP
Sbjct: 227 EFRKEDVEFVQIVVKGQSFVLHQIRKMVGMVITVVRELHLKSAIQRSFEGQ-RMDIPMAP 285
Query: 445 EVGLYLDECIFASYNKKWKDSHE 467
+GL L+ + Y+KK H+
Sbjct: 286 GLGLLLERTHYDCYDKKNAKDHQ 308
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 10/147 (6%)
Query: 45 AAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDR 104
+ G K+ K+ K A+ Y G Y GMQ TIE L EA+ +G ++ R
Sbjct: 18 SGGVHKEPKKPRVKQAKYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMEKAGWITAAQR 77
Query: 105 GNPRRYDWARSARTDKGVSAVGQVV-------SGRFCIDPPGLVERLNSNLPTQIRIFGY 157
P + + R+ARTD+ VSA Q+ ++ D G+ LN+ LP IR+FG
Sbjct: 78 DKPFDFFFQRAARTDRAVSAARQMCGMQLPRDDDKYQTDGAGV---LNNLLPDDIRVFGM 134
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFAL 184
+R F+ +K CD R Y Y P F
Sbjct: 135 RRTINFFHPQKQCDYRTYSYTCPSFVF 161
>gi|242040995|ref|XP_002467892.1| hypothetical protein SORBIDRAFT_01g035980 [Sorghum bicolor]
gi|241921746|gb|EER94890.1| hypothetical protein SORBIDRAFT_01g035980 [Sorghum bicolor]
Length = 520
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 34/211 (16%)
Query: 12 PSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGV 71
P+PSLSP PD TS +D + + +++++ + Y G
Sbjct: 51 PAPSLSP---PD--------TSAND-----------GGGGMRWESARKKRVVLRIGYIGT 88
Query: 72 GYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQV 128
Y+G+QK TIE LE A+F SG + E + G ++ W RS+RTDKGV ++ +
Sbjct: 89 EYRGLQKQRELGVDSTIESVLESAIFKSGGILESNYGKLQKVGWERSSRTDKGVHSLATM 148
Query: 129 VSGRFCI-------DPPG--LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
+S + I DP G L +NSNLP +R+F SF+ ++ C R Y YLL
Sbjct: 149 ISLKMEIPDRAWEDDPDGIALASFINSNLPDNVRVFSILPAQRSFDVRRECLYREYFYLL 208
Query: 180 PVFALDSSSHRDRESVMASLGSGNELVKCLE 210
P + E + L N ++K E
Sbjct: 209 PAEVIGIKDGYSPEEIQEHLSEFNSILKGFE 239
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%)
Query: 375 RYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQK 434
R II+ + GI F++ + G SFMLHQIRKM+G AVAV R P+ +IE +L K
Sbjct: 345 RDIITCSCGELQTSSGIQFVELTICGVSFMLHQIRKMVGTAVAVKRGLLPKDIIELSLAK 404
Query: 435 DVNINVPTAPEVGLYLDECIFASYNKK 461
I +P AP L L + F + +K+
Sbjct: 405 FSRIVLPIAPSEVLILKDNSFCTKSKE 431
>gi|255553385|ref|XP_002517734.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223543132|gb|EEF44666.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 377
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 12/172 (6%)
Query: 51 TTKRQLCKRRKIAIFFAYCGVGYQGMQKNP---GAKTIEGDLEEALFHSGAVSERDRGNP 107
+ K + +++K+ + Y G Y+G+QK TIE +LE A+F +G + + + GN
Sbjct: 45 SQKWEPFRKKKVVLRVGYVGTDYRGLQKQEDEHSLSTIEAELECAIFKAGGILDSNYGNL 104
Query: 108 RRYDWARSARTDKGVSAVGQVVSGRFCI-------DPPG--LVERLNSNLPTQIRIFGYK 158
+ WARS+RTDKGV ++ ++S + I DP G L E +N LP IRIF
Sbjct: 105 HKIAWARSSRTDKGVHSLATMISMKMEIPENAWKEDPNGIALAECVNYYLPDNIRIFSIL 164
Query: 159 RVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLE 210
SF+ ++ C+ R+Y YLLP + H + + N+++ E
Sbjct: 165 PSQKSFDPRRECNLRKYSYLLPAEIIGIKGHFTSAEIDNHISDFNDILNAFE 216
>gi|356499006|ref|XP_003518335.1| PREDICTED: putative tRNA pseudouridine synthase-like, partial
[Glycine max]
Length = 453
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 13/168 (7%)
Query: 55 QLCKRRKIAIFFAYCGVGYQGMQKNP---GAKTIEGDLEEALFHSGAVSERDRGNPRRYD 111
Q +++K+A+ AY G Y+G+Q TIE +LE A+F +G + E + G+ ++
Sbjct: 40 QPSRKKKVAMLVAYVGTNYRGLQMQHDEHSLSTIEKELETAIFKAGGIRESNFGDLQKIG 99
Query: 112 WARSARTDKGVSAVGQVVSGRFCI-------DPP--GLVERLNSNLPTQIRIFGYKRVTA 162
WARS+RTDKGV ++ ++S + I DP GL +NS LP I++
Sbjct: 100 WARSSRTDKGVHSLATIISFKMEIPENAWNGDPYGFGLANYVNSYLPFDIKVISILPSQR 159
Query: 163 SFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLE 210
SF+ +K C R+Y YLLP + SH E V + N+++ E
Sbjct: 160 SFDPRKECILRKYSYLLPAEIIGIQSHFSDE-VDYHISEFNDILNVFE 206
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLY 449
G ++++ + G+SFMLHQIRKM+G AVAV R P+ +I+ +L + I +P AP L
Sbjct: 314 GYNYIEISIQGESFMLHQIRKMVGTAVAVKRKALPKDIIKLSLTRFSRIILPLAPSEALI 373
Query: 450 L 450
L
Sbjct: 374 L 374
>gi|209876690|ref|XP_002139787.1| tRNA pseudouridine synthase family protein [Cryptosporidium muris
RN66]
gi|209555393|gb|EEA05438.1| tRNA pseudouridine synthase family protein [Cryptosporidium muris
RN66]
Length = 497
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
RF++IL Y G+HNFHNFT+R + + SA R+I + + + LK + GQSF+
Sbjct: 334 RFSKILNQYTGTHNFHNFTSRLEYNNASAWRHIDKINVNRLPVKNKLKLLKITIKGQSFL 393
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKD 464
LHQIRK+I LA+ + R AP S I ++ AP GL LD + YN++
Sbjct: 394 LHQIRKIIALAIEIYRGSAPLSSINLCFGSR-KYSIHLAPSQGLLLDRVYYDHYNQRISS 452
Query: 465 S 465
S
Sbjct: 453 S 453
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA------KTIEGDLEEALFHSGAV----SERDRGNPR 108
RR + Y G Y GMQ +TIE LEEAL S + S+ + N +
Sbjct: 7 RRTYCMAIGYNGTNYYGMQIQSNTNNCKYIETIESKLEEALIKSSMLVIRKSKNEYVNLK 66
Query: 109 RYD---------WARSARTDKGVSAVGQVVSGR 132
++ W R RTDKGV +V Q+VS R
Sbjct: 67 EFNSSSFLTSINWTRVGRTDKGVHSVCQIVSFR 99
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 140 LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
LV++LN LP IRIF RV+ +F+A+K C +R+Y Y++P + L
Sbjct: 178 LVKKLNLILPQTIRIFTLIRVSKNFDARKDCFRRQYEYIMPEYVL 222
>gi|440470753|gb|ELQ39808.1| tRNA pseudouridine synthase 1 [Magnaporthe oryzae Y34]
gi|440481600|gb|ELQ62164.1| tRNA pseudouridine synthase 1 [Magnaporthe oryzae P131]
Length = 729
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKCEVVGQSF 403
+ L YVG+HNFHN+T K D SA+R+I SF + + + +++ +V GQSF
Sbjct: 514 KLQAALDKYVGTHNFHNYTILKKFTDSSAKRHIKSFKVNPEPIQIGETEWVSLKVHGQSF 573
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
M+HQIRKM+ +AV VR P I + + I++P AP +GL L+ +F +Y+
Sbjct: 574 MMHQIRKMVAMAVLTVRCGVPLDRITQSYEAK-RISIPKAPGLGLLLERPVFENYS 628
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY+GMQ N KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 120 KKKVAVLIGYAGTGYKGMQINHFEKTIEGDLFRAFVDAGAISKANASDPKKVSLMRCART 179
Query: 119 DKGVSAVGQVVSGRFCI 135
DKGV A V+S + +
Sbjct: 180 DKGVHAASNVISLKLIV 196
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 140 LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
LV R+NS+LP QIR++ R SF+ + CD R Y YL+P AL
Sbjct: 299 LVARINSHLPDQIRVWDILRTNNSFSCYQACDSRWYEYLMPTHAL 343
>gi|357491367|ref|XP_003615971.1| Pseudouridylate synthase [Medicago truncatula]
gi|355517306|gb|AES98929.1| Pseudouridylate synthase [Medicago truncatula]
Length = 501
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 12/168 (7%)
Query: 55 QLCKRRKIAIFFAYCGVGYQGMQKNP---GAKTIEGDLEEALFHSGAVSERDRGNPRRYD 111
Q +++K+ + AY G Y+G+Q T+E +LE A+F +G + E + G+ +
Sbjct: 52 QPFRKKKVVMRIAYTGTNYRGLQMQRDQNSLSTVEKELESAIFKAGGIRESNLGDLEKIG 111
Query: 112 WARSARTDKGVSAVGQVVSGRFCI-------DPPG--LVERLNSNLPTQIRIFGYKRVTA 162
WARS+RTDKGV ++ +V+ + I DP G L +NS LP I++
Sbjct: 112 WARSSRTDKGVHSLATMVAFKMEIPENSWNEDPFGFALANYVNSYLPCDIKVISILPAQR 171
Query: 163 SFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLE 210
SF+ +K C R+Y YLLP + SH + + + N+++K E
Sbjct: 172 SFDPRKECVLRKYSYLLPADIIGIQSHSSNDEIDYHMSEFNDILKEFE 219
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLY 449
G +++ + G+SFMLHQIRKM+ AVAV R P+ +I +L K I +P AP L
Sbjct: 346 GHSYIEIYIEGESFMLHQIRKMVATAVAVKRKLLPRDIITLSLSKFSRIILPLAPSEVLL 405
Query: 450 L 450
L
Sbjct: 406 L 406
>gi|389627892|ref|XP_003711599.1| tRNA pseudouridine synthase 1 [Magnaporthe oryzae 70-15]
gi|351643931|gb|EHA51792.1| tRNA pseudouridine synthase 1 [Magnaporthe oryzae 70-15]
Length = 720
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKCEVVGQSF 403
+ L YVG+HNFHN+T K D SA+R+I SF + + + +++ +V GQSF
Sbjct: 505 KLQAALDKYVGTHNFHNYTILKKFTDSSAKRHIKSFKVNPEPIQIGETEWVSLKVHGQSF 564
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
M+HQIRKM+ +AV VR P I + + I++P AP +GL L+ +F +Y+
Sbjct: 565 MMHQIRKMVAMAVLTVRCGVPLDRITQSYEAK-RISIPKAPGLGLLLERPVFENYS 619
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++K+A+ Y G GY+GMQ N KTIEGDL A +GA+S+ + +P++ R ART
Sbjct: 111 KKKVAVLIGYAGTGYKGMQINHFEKTIEGDLFRAFVDAGAISKANASDPKKVSLMRCART 170
Query: 119 DKGVSAVGQVVSGRFCI 135
DKGV A V+S + +
Sbjct: 171 DKGVHAASNVISLKLIV 187
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 140 LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
LV R+NS+LP QIR++ R SF+ + CD R Y YL+P AL
Sbjct: 290 LVARINSHLPDQIRVWDILRTNNSFSCYQACDSRWYEYLMPTHAL 334
>gi|297826435|ref|XP_002881100.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326939|gb|EFH57359.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 12/141 (8%)
Query: 53 KRQLCKRRKIAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNPRR 109
K + +++K+ I Y G Y+G+Q +P KTIEG+LE A++ +G + + + G+ +
Sbjct: 56 KWESYRKKKVVIRIGYVGTDYRGLQIQRDDPSLKTIEGELEVAIYKAGGIRDSNYGDLHK 115
Query: 110 YDWARSARTDKGVSAVGQVVSGRFCI-------DPPG--LVERLNSNLPTQIRIFGYKRV 160
WARS+RTDKGV ++ +S + I DP G L + ++ +LP IR+F
Sbjct: 116 IGWARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLPS 175
Query: 161 TASFNAKKFCDQRRYVYLLPV 181
F+ ++ C R+Y YLLPV
Sbjct: 176 NRRFDPRRECTLRKYSYLLPV 196
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 387 NVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEV 446
N G F++ + G+SFMLHQIRKMIG AVAV R P+ +I +L K I +P AP
Sbjct: 335 NSLGFGFVEISIWGESFMLHQIRKMIGTAVAVKRELLPRDIIRLSLNKFTRIVLPLAPSE 394
Query: 447 GLYL 450
L L
Sbjct: 395 VLIL 398
>gi|145545961|ref|XP_001458664.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426485|emb|CAK91267.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 339 GEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEV 398
GEE ++ + ++K +VG+HNFHN++ K DP + RYI+S + + + +F K +
Sbjct: 165 GEEILEKVSNLVKKFVGTHNFHNYSRGMKYTDPQSMRYILSIQVE-LFKCQDREFFKFLI 223
Query: 399 VGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASY 458
GQSF+ HQIRKM+G+ + + + P + I+ K+ + + AP GL+L+ F Y
Sbjct: 224 HGQSFIYHQIRKMMGIVIQIFQEELPDTFIDNTFFKN-QLRIILAPAEGLFLNRISFEGY 282
Query: 459 NKKW 462
N K+
Sbjct: 283 NTKF 286
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 43/205 (20%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAK--TIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
++K+ + F Y G Y G+Q G + T+E L +AL S + E++ + + W+R A
Sbjct: 7 KQKVLLTFGYNGANYHGLQIQKGVEFETVESKLFQALKDSNLIMEQNANDLSKSGWSRGA 66
Query: 117 RTDKGVSAVGQVVSGRFCI--------------------------DPPGLVERLNSNLPT 150
RTDKGV A+ ++ + CI D ++ +NSNLP
Sbjct: 67 RTDKGVHALCNSIAVKLCINKEFFKDEIQQNEEEIVSKLRDKQKVDYSKVLNVINSNLPN 126
Query: 151 QIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLE 210
I++ K VT F+ +K R Y Y+ PV S + D++ G E+++ +
Sbjct: 127 DIKVHSIKLVTQGFDVRKNARYRFYEYIAPV-----SIYSDKK--------GEEILE--K 171
Query: 211 CSERGRKVIGVMGKRTYQLGLPSND 235
S +K +G Y G+ D
Sbjct: 172 VSNLVKKFVGTHNFHNYSRGMKYTD 196
>gi|441661308|ref|XP_003280267.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Nomascus leucogenys]
Length = 163
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 73/115 (63%), Gaps = 7/115 (6%)
Query: 46 AGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSER 102
+G D + +L KR KI + AY G GY GMQ+N G+ KTIE DL AL SG + E
Sbjct: 43 SGGDEERRGKLPKR-KIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPEN 101
Query: 103 DRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFG 156
+ R+ + R ARTDKGVSA GQVVS + + ID ++E++NS+LP+ IRI G
Sbjct: 102 HGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLID--DILEKINSHLPSHIRILG 154
>gi|449016496|dbj|BAM79898.1| similar to tRNA-pseudouridine synthase I [Cyanidioschyzon merolae
strain 10D]
Length = 773
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 93/191 (48%), Gaps = 45/191 (23%)
Query: 58 KRRKIAIFFAYCGVGYQGMQ------KNPGAK-----------------TIEGDLEEALF 94
K+R IA++F Y G ++G Q + P A T+EG+L +AL+
Sbjct: 88 KKRNIALWFGYAGTEFRGSQVLEPRRRQPVATAANEAGSGDRAVDLRDGTVEGELAQALY 147
Query: 95 HSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG-----------LVER 143
GAV+E + + W+R++RTDKGV AV VVS + +D V+R
Sbjct: 148 RIGAVTELNFMKLSKICWSRASRTDKGVHAVANVVSAKLLLDLRRDLTSNDELTDLFVDR 207
Query: 144 LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGN 203
LN+ LP IR+FG +R++ F A+ C R Y YLLP + LD RE +
Sbjct: 208 LNAQLPPNIRVFGGQRMSKGFRARSACTLREYDYLLPRWVLDG-----REDLFL------ 256
Query: 204 ELVKCLECSER 214
+ ++C E + R
Sbjct: 257 QALRCFEGTHR 267
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%)
Query: 389 EGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGL 448
G DFL V GQSF+LHQIR++IG + V R +E AL+ + AP L
Sbjct: 541 HGCDFLLVRVRGQSFVLHQIRRLIGAGILVARGHLSLEALEAALEGPYRVVFWRAPGSCL 600
Query: 449 YLDECIF 455
L + F
Sbjct: 601 MLYQPSF 607
>gi|403411896|emb|CCL98596.1| predicted protein [Fibroporia radiculosa]
Length = 357
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 77 QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCID 136
Q +P +TIEG L AL GAVS+ + +P + + R+ARTD GV A G VS +
Sbjct: 111 QPDPNLRTIEGVLFNALVKVGAVSQDNADDPVKVNLGRAARTDAGVHAAGNAVSMKLITP 170
Query: 137 PPG---LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
PG LV R+N LP +IR++ RV FNA+ CD R+Y Y P + +
Sbjct: 171 VPGVPDLVARMNEELPPEIRLWSILRVQNGFNARTTCDSRKYTYFFPSYLM 221
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 349 ILKHYVGSHNFHNFTTRTKAEDPSARRYIISFG-ADSVVNVEGIDFLKCEVVGQSFMLHQ 407
I + + GSHNFHNFT D S R+I S AD VV E +++ GQSFMLHQ
Sbjct: 278 IAQAFNGSHNFHNFTIGRDFGDRSCVRHIKSITIADPVVYGE-TEWISVLFHGQSFMLHQ 336
Query: 408 I 408
I
Sbjct: 337 I 337
>gi|302803171|ref|XP_002983339.1| hypothetical protein SELMODRAFT_117791 [Selaginella moellendorffii]
gi|300149024|gb|EFJ15681.1| hypothetical protein SELMODRAFT_117791 [Selaginella moellendorffii]
Length = 437
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 18/145 (12%)
Query: 58 KRRKIAIFFAYCGVGYQGMQ---------KNPGAKTIEGDLEEALFHSGAVSERDRGNPR 108
+++K+A++ Y G GY+G N IE DL++A++ +G + + + G+
Sbjct: 28 RKKKVAMWIGYVGTGYKGNHCSLFLELSALNSSLTAIEADLDKAIYKAGGILDSNYGHHM 87
Query: 109 RYDWARSARTDKGVSAVGQVVSGRFCI------DPPGLVE---RLNSNLPTQIRIFGYKR 159
+ WARS+RTDKGV ++ V+S + + D PG +E R+N +LP IR+FG
Sbjct: 88 KVGWARSSRTDKGVHSLATVISLKMELPIDAWRDDPGGIEIADRINRHLPQCIRVFGVVP 147
Query: 160 VTASFNAKKFCDQRRYVYLLPVFAL 184
V+ +F + C +R Y Y LP +
Sbjct: 148 VSKTFRPRMACSERSYDYFLPALCV 172
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 38/64 (59%)
Query: 394 LKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDEC 453
L+ V G SFM+HQIRKMIG AVAV R P +I+ +L + I +P AP GL L
Sbjct: 296 LRVSVTGASFMVHQIRKMIGTAVAVTRKLLPPDIIQMSLCRHSRIVLPIAPCEGLTLASS 355
Query: 454 IFAS 457
F S
Sbjct: 356 KFCS 359
>gi|323306932|gb|EGA60216.1| Pus1p [Saccharomyces cerevisiae FostersO]
Length = 361
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGIDFLKCEVVGQS 402
+F Y+G+HNFHNFT ++PSA R++ I V+ +++ ++ GQS
Sbjct: 113 KFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHGQS 172
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FMLHQIRKM+ +A + R P I A + IN+P AP +GL L+ +F YNK+
Sbjct: 173 FMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEAPVFEGYNKR 230
>gi|281206578|gb|EFA80764.1| hypothetical protein PPL_06350 [Polysphondylium pallidum PN500]
Length = 624
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 10/134 (7%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKN-PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
K+ +A+ FAY G GY G++ G +E LE+ALF +G + + G+ R W+RS
Sbjct: 181 LKKSPMALLFAYVGTGYHGLEYQISGYNALENTLEQALFKAGLILPSNLGDLDRIRWSRS 240
Query: 116 ARTDKGVSAVGQVVSGRFCI-DPPG--------LVERLNSNLPTQIRIFGYKRVTASFNA 166
+RTDKGV ++ +++G I D G L+E++N LP +RI + SF+
Sbjct: 241 SRTDKGVHSLSTLLAGCLEIEDGSGYYPEKVAVLIEKINRGLPPNLRILALAPTSRSFDP 300
Query: 167 KKFCDQRRYVYLLP 180
++ C R Y Y+LP
Sbjct: 301 RRQCTSRTYHYVLP 314
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 393 FLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
+++ EV G SF+ +QIRKMIG +A+ + ++E AL+ +I P AP LYL
Sbjct: 455 WVRFEVEGASFIQYQIRKMIGFVLAIGNGYCDRRMLELALKSPFSIRSPVAPPNPLYL 512
>gi|428673414|gb|EKX74327.1| tRNA pseudouridine synthase, putative [Babesia equi]
Length = 468
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 74/151 (49%), Gaps = 21/151 (13%)
Query: 49 DSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNP--------GAKTIEGDLEEALFHSGAVS 100
D R + K AI F Y G Y G QK +TIEG +E AL GA++
Sbjct: 75 DVIETRIHVPKAKYAIAFGYLGTRYHGYQKQVEYGTGDMNKVETIEGTMESALVEIGAIN 134
Query: 101 ERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGL-----------VERLNSNLP 149
E R P + ++S+RTDKGV A ++GRF I P L + +LN LP
Sbjct: 135 EVYRNLPYKLQLSKSSRTDKGVHAGCTYIAGRFEI--PELEEEVGTKEEFFIRKLNDALP 192
Query: 150 TQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
IR F RVT F+A+ C +R+Y Y++P
Sbjct: 193 NDIRCFQIVRVTKGFDARTMCSKRKYEYIIP 223
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 349 ILKHYVGSHNFHNFTTRTKAEDPSARRYI------------ISFGADSVVNVEGIDFLKC 396
I+ YVG+H+F NFT R K + + +RYI I V G + ++
Sbjct: 288 IMDMYVGTHDFQNFTVRQKVQGSTTQRYIHKTKVNIFTLSNIFHQIKKDVIGNGQNVVRI 347
Query: 397 EVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFA 456
+VGQSF+ +QIRKMI +A+ N AP+S I +L + +N AP GL L F
Sbjct: 348 TIVGQSFLYNQIRKMISMAIETYLNLAPKSTIAFSLFNNRILNTNIAPSEGLVLHHPYFD 407
Query: 457 SYN 459
SYN
Sbjct: 408 SYN 410
>gi|299470490|emb|CBN78481.1| pseudouridylate synthase, putative [Ectocarpus siliculosus]
Length = 743
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 12/134 (8%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RK+AI Y G + G Q++ A +T+EG+LE AL+ +GA+++ + G+ + W R+
Sbjct: 28 KRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRT 87
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLV---------ERLNSNLPTQIRIFGYKRVTASFNA 166
+RTDKGV A V + + + ++LN LP IR F +V SF
Sbjct: 88 SRTDKGVHASKTVAAAKLLLPQETFTATGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRG 147
Query: 167 KKFCDQRRYVYLLP 180
++ C R Y Y LP
Sbjct: 148 REECTLREYTYYLP 161
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 392 DFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLD 451
+F++ ++ G++F+ +QIR MIG A+ R +E AL+ + VP AP GL L+
Sbjct: 449 EFVRIDIRGKAFVYNQIRLMIGGALGEARGDLWSGFVEAALKTPYKLRVPLAPAEGLVLE 508
Query: 452 ECIFASYN 459
F +
Sbjct: 509 SQAFTRHT 516
>gi|219120809|ref|XP_002185636.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582485|gb|ACI65106.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 293
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADS-VVNVEGIDFLKCEVVGQSFMLHQI 408
L+ Y G+H FHNF+ KA + A RYI F + +V G++++ +V+GQSF+L+QI
Sbjct: 181 LQVYEGTHAFHNFSRGVKANEARAARYIERFHVEEPIVFPNGVEWIPTQVLGQSFLLNQI 240
Query: 409 RKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
RKM+ +A+ V R P + + AL++ ++ + AP GL+L+ + YN++
Sbjct: 241 RKMVCMAMDVARGVVPLTNVSRALERQSDVRINVAPAQGLFLEMSYYGGYNRR 293
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
AY G Y G Q N G +T + + E A+ + + + G+P +Y W+ S RTDKGV
Sbjct: 1 FLLAYVGTNYGGFQINDGQRTPQAEFELAMLRTRLLLPCNFGSPHKYSWSTSGRTDKGVH 60
Query: 124 AVGQVVSGRFCIDPPGLV----ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
A QVVS + + P + + +N+ LP +R+ R T +F AK D+ RY Y++
Sbjct: 61 ACAQVVSAKVELLPDQTMAEVRDEMNTVLPDDVRVLDVVRTTRNFCAKTQRDRVRYQYMI 120
Query: 180 PVFAL 184
P F
Sbjct: 121 PSFVF 125
>gi|145529301|ref|XP_001450439.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124418050|emb|CAK83042.1| unnamed protein product [Paramecium tetraurelia]
Length = 297
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 349 ILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQI 408
I Y+G+HNFHN+T++ + DPS++R+I F + +N ++LK ++G SFM HQI
Sbjct: 137 ICNQYLGTHNFHNYTSKKEYNDPSSKRFIQDFRVQN-LNFHNENYLKFTILGNSFMYHQI 195
Query: 409 RKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
RK+IG +V+ S I+ + + ++ AP+ GLYL E F YN K
Sbjct: 196 RKIIGTIYQIVQEKKDLSFIQDTFSQQQH-SLYIAPQQGLYLREIKFTGYNMK 247
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 19/110 (17%)
Query: 93 LFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS------GRFC------------ 134
L VSE + + ++ +R ARTD+GV A+ VVS ++C
Sbjct: 20 LLKQNLVSELNADSIKKIGVSRGARTDRGVHALCNVVSLKLQIDQKYCSSMTNNKLVDKW 79
Query: 135 -IDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
ID L++ LNS LP+ I++ K VT SFN K DQR Y Y+ P F+
Sbjct: 80 NIDWDLLIQELNSQLPSDIKVNAIKHVTQSFNVKHQADQRMYNYISPSFS 129
>gi|403221454|dbj|BAM39587.1| pseudouridylate synthase [Theileria orientalis strain Shintoku]
Length = 500
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 322 RSVNGEEKLLKGSG-FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF 380
++ EE L + G + EE ++ +ILK Y G+ +FHNFT + + E + +RYI
Sbjct: 295 KAYKSEEALYEEQGKYVEVEEYLEKLRQILKQYEGTKDFHNFTVKQRLETKNTQRYIEKI 354
Query: 381 GADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINV 440
+EG+ ++ + GQSF+ +QIRKMI LA+ AP++ ++ AL+K +N+
Sbjct: 355 KVKEE-EIEGMKLVRITIQGQSFLYNQIRKMICLALQEYLAVAPKNAVKYALKKSATLNI 413
Query: 441 PTAPEVGLYLDECIFASYN 459
T P GL L + +YN
Sbjct: 414 NTVPSEGLILHHPCYDTYN 432
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 61 KIAIFFAYCGVGYQGMQKN--------PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDW 112
K A+ F Y G Y G QK KT+EG +E L GA+ E R +
Sbjct: 70 KYALAFGYIGTNYHGYQKQVEYKTGIMDKVKTVEGTVENCLIKIGAIDESLRNMNHKLQM 129
Query: 113 ARSARTDKGVSAVGQVVSGRFCID 136
++S+RTDKGV A + GRF ++
Sbjct: 130 SKSSRTDKGVHAACIYIGGRFNVN 153
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 140 LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
++ LN+ LP IR F +RVT F+A+ C +R+Y YLLPV+ L
Sbjct: 218 FIKTLNAVLPEDIRCFKIQRVTKGFDARIMCSKRKYEYLLPVWVL 262
>gi|71033963|ref|XP_766623.1| tRNA pseudouridine synthase [Theileria parva strain Muguga]
gi|68353580|gb|EAN34340.1| tRNA pseudouridine synthase, putative [Theileria parva]
Length = 475
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 74/178 (41%), Gaps = 45/178 (25%)
Query: 52 TKRQLCKRRKIAIFFAYCGVGYQGMQKN--------PGAKTIEGDLEEALFHSGAVSERD 103
KR + K I F Y G Y G QK KT+EG LE LF GA++E
Sbjct: 61 VKRVHVPKTKYVISFGYVGTAYHGYQKQVEYKTGEMDKVKTVEGTLENCLFRIGAINEAF 120
Query: 104 RGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGL----------------------- 140
R + ++ +RTDKGV A + GRF ID L
Sbjct: 121 RNMTHKLQMSKCSRTDKGVHAACTYLGGRFNIDVEDLSDDVVSQAKNHPSESNGELSNNL 180
Query: 141 --------------VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
V RLNS LP IR F +RVT F+A+ C +R+Y Y++P + L
Sbjct: 181 ESTKDQKLSNEDKFVLRLNSVLPEDIRCFKIQRVTKGFDARTLCSKRKYEYIIPEWIL 238
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 339 GEEEK-----KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGI 391
GE EK KR IL Y G+H+FHNFT + K + ++ R+I I +D + + +
Sbjct: 284 GEYEKTEIDHKRLEEILNFYQGTHSFHNFTVKQKEDINNSSRFIHKIYIKSDKL---QEL 340
Query: 392 DFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLD 451
D +K +VGQSF+ +QIRKMI LA+ V AP++ +E +L K +N+ P GL L
Sbjct: 341 DVVKILIVGQSFLYNQIRKMISLALQVYLKIAPKNSLEFSLNKSHILNINLVPSEGLILH 400
Query: 452 ECIFASYN 459
F YN
Sbjct: 401 HPYFDHYN 408
>gi|302754550|ref|XP_002960699.1| hypothetical protein SELMODRAFT_63437 [Selaginella moellendorffii]
gi|300171638|gb|EFJ38238.1| hypothetical protein SELMODRAFT_63437 [Selaginella moellendorffii]
Length = 403
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 78/145 (53%), Gaps = 18/145 (12%)
Query: 58 KRRKIAIFFAYCGVGYQGMQ---------KNPGAKTIEGDLEEALFHSGAVSERDRGNPR 108
+++K+A++ Y G GY+G N IE DL++A++ +G + + + G+
Sbjct: 1 RKKKVAMWIGYVGTGYKGNHCSLFLELSALNSSLTAIEADLDKAIYKAGGILDSNYGHHM 60
Query: 109 RYDWARSARTDKGVSAVGQVVSGRFCI------DPPGLVE---RLNSNLPTQIRIFGYKR 159
+ WARS+RTDKGV ++ V+S + + D PG +E +N +LP IR+FG
Sbjct: 61 KVGWARSSRTDKGVHSLATVISLKMELPIDAWRDDPGGIEIADMINRHLPQCIRVFGVVP 120
Query: 160 VTASFNAKKFCDQRRYVYLLPVFAL 184
V+ +F + C +R Y Y LP +
Sbjct: 121 VSKTFRPRMACSERSYDYFLPALCV 145
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 38/64 (59%)
Query: 394 LKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDEC 453
L+ V G SFM+HQIRKMIG AVAV R P +I+ +L + I +P AP GL L
Sbjct: 270 LRVSVTGASFMVHQIRKMIGTAVAVTRKLLPPDIIQMSLCRHSRIVLPIAPCEGLTLASS 329
Query: 454 IFAS 457
F S
Sbjct: 330 KFCS 333
>gi|405973228|gb|EKC37952.1| tRNA pseudouridine synthase A [Crassostrea gigas]
Length = 412
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 389 EGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGL 448
EG++F+ C+V GQSFMLH IRKMIGL +AVV+ + IE + + ++VP AP +GL
Sbjct: 174 EGLEFVTCKVRGQSFMLHHIRKMIGLMIAVVKGYCKEDAIELSWGSE-KVDVPKAPGLGL 232
Query: 449 YLDECIFASYNKKW 462
LDE F YNKKW
Sbjct: 233 LLDELYFDGYNKKW 246
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 41/159 (25%)
Query: 30 SATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDL 89
S+ T + +++ +P G + +RK+A+ AY G GY G+Q+NP +IE ++
Sbjct: 21 SSKKTKNIKKEQVPQMQGNPNV-------KRKVAVLIAYNGKGYHGIQRNPPFPSIEEEI 73
Query: 90 EEALFHSGAVSERDRGNPR----RYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLN 145
+AL A+++ P + + R+ARTDK VSA RF
Sbjct: 74 LKALLEVKAITQEQYDKPSLVSTQVSFQRAARTDKHVSA------ARF------------ 115
Query: 146 SNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
KR T F+ K C R Y+Y+LP +AL
Sbjct: 116 ------------KRTTKGFDCKTQCTGRTYMYVLPTYAL 142
>gi|366993178|ref|XP_003676354.1| hypothetical protein NCAS_0D04120 [Naumovozyma castellii CBS 4309]
gi|342302220|emb|CCC69993.1| hypothetical protein NCAS_0D04120 [Naumovozyma castellii CBS 4309]
Length = 391
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 337 CYGEEEKK--RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI--ISFGADSVVNVEGID 392
CY + + + +L HY+G+ FHNFTT + D S RY+ I+ + +
Sbjct: 204 CYSVPDLRIGKLESVLNHYLGTKRFHNFTTGKETMDSSCMRYVKNITISPPFRKDDNKTE 263
Query: 393 FLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDE 452
++ ++ GQSFMLHQIRKMI LA + R+ ++ LQ D I +P AP GL L+
Sbjct: 264 WVSLKIQGQSFMLHQIRKMIWLATLIARSNLQIEYVDKFLQ-DSRIYIPNAPATGLLLNY 322
Query: 453 CIFASYNKKWK 463
FA+YN+K K
Sbjct: 323 PEFAAYNEKLK 333
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKN-PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
++R++ I Y G GY GMQ N P TIE L + L G +S+ + + + + R+
Sbjct: 50 RKRRVGILLGYVGTGYYGMQYNTPMFPTIESTLFDTLVSVGCISKDNSVDFHKNGFMRAC 109
Query: 117 RTDKGVSAVGQVVSGRFC-IDPPGLVERLNSNL-PTQIRIFGYKRVTASFNAKKFCDQRR 174
RTDKGV A+ V+S + D P + + +N L P IR++ K V FN ++ R
Sbjct: 110 RTDKGVHAMVNVISVKMSKYDEPHIKDMINKLLVPKGIRVWDIKMVNKRFNCRRAVSSRW 169
Query: 175 YVYLLPVFAL 184
Y YLLP + L
Sbjct: 170 YEYLLPTYVL 179
>gi|356577897|ref|XP_003557058.1| PREDICTED: putative tRNA pseudouridine synthase-like [Glycine max]
Length = 518
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 16/166 (9%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPG---AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
++K+ + Y G ++G+Q TIE +LE A+F +G + + + G+ + W RS
Sbjct: 73 KKKVVMRVGYVGTNFRGLQMQRDEHRLSTIEKELETAIFMAGGMRDSNFGDLNKVKWGRS 132
Query: 116 ARTDKGVSAVGQVVSGRFCIDPP-----------GLVERLNSNLPTQIRIFGYKRVTASF 164
+RTDKGV ++ +++ F ++ P L R+NS LP IRIF T F
Sbjct: 133 SRTDKGVHSLATIIA--FKMEIPENAWKGDDYGIALANRINSYLPNTIRIFSILPSTKRF 190
Query: 165 NAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLE 210
+ ++ C+ R+Y YLLP + SH ++ + + N ++ E
Sbjct: 191 DPRRECNLRKYSYLLPADIIGIQSHFSQDEIDFHILEFNSILNVFE 236
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 37/61 (60%)
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLY 449
G D+++ V G SFMLHQIRKM+G AVAV RN P+ I +L K I P AP L
Sbjct: 363 GYDYVEVHVWGDSFMLHQIRKMVGTAVAVKRNLIPRDAILLSLSKFSRIVFPLAPPEVLI 422
Query: 450 L 450
L
Sbjct: 423 L 423
>gi|402594751|gb|EJW88677.1| RNA recognition domain-containing protein [Wuchereria bancrofti]
Length = 537
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 90/200 (45%), Gaps = 43/200 (21%)
Query: 43 PAAAGADSTTKRQLCKRRK---IAIFFAYCGVGYQGMQKNPGAK---------------- 83
PA + D + + RRK A+ AY G Y GMQ G
Sbjct: 306 PADSAGDISDEPVRKSRRKEYSYALLLAYQGKKYNGMQLCIGLNQCMRPLFYELGVCDVN 365
Query: 84 -------------TIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS 130
TIEG+L +A+ G + E D +P R+ + R+ARTD+ VSA Q+ S
Sbjct: 366 VQYWQYLVQKDFPTIEGELFKAMAKCGYICENDVFSPVRFAFQRAARTDRSVSAARQMCS 425
Query: 131 GRFCIDP-----PGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA-- 183
R + ++LN++LP +IR+ G +R SF A K CD+R Y Y LP +A
Sbjct: 426 MRLAPENHEYFLKTATDKLNAHLPEEIRVLGVRRAIRSFKAHKNCDKRTYSYTLPTYAFA 485
Query: 184 ----LDSSSHRDRESVMASL 199
L +S R E+ MA L
Sbjct: 486 RANELTNSGFRMSETSMAEL 505
>gi|302781376|ref|XP_002972462.1| hypothetical protein SELMODRAFT_97541 [Selaginella moellendorffii]
gi|300159929|gb|EFJ26548.1| hypothetical protein SELMODRAFT_97541 [Selaginella moellendorffii]
Length = 428
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 59 RRKIAIFFAYCGVGYQGMQKN---PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
++ +AI+ Y G Y+G+Q G ++E +LEEA++ +G +SE + + + W RS
Sbjct: 1 KKNVAIWVGYVGTDYKGLQIQRGVAGIHSVENELEEAIYKAGGISEENYRHLDKVRWKRS 60
Query: 116 ARTDKGVSAVGQVVSGRF---------CIDPPGLVERLNSNLPTQIRIFGYKRVTASFNA 166
+RTDKGV ++ VV+ + +D + + N+ LP I IFG VT SF+A
Sbjct: 61 SRTDKGVHSLCTVVTMKLEVAVNSWLNDVDGIKIADAFNAYLPANISIFGVVPVTKSFDA 120
Query: 167 KKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLE 210
++ C R Y Y P + ++ E V + +K LE
Sbjct: 121 RRSCYSRTYDYYFPAACIGINNESSSEDVDQRIQDFRRTLKSLE 164
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 394 LKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
++ V G+SFM+HQIRKM+G A+AV R+ P+ I + + + +P AP GL L
Sbjct: 270 VRIRVTGESFMVHQIRKMVGTAIAVFRHVLPEDAIPVSTCRHARVVLPLAPPHGLVL 326
>gi|407410310|gb|EKF32791.1| hypothetical protein MOQ_003354 [Trypanosoma cruzi marinkellei]
Length = 574
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 77/157 (49%), Gaps = 15/157 (9%)
Query: 59 RRKIAIFFAYCGVGYQGMQKN--PGAKTIEGDLEEALFHSGAVSERDRGNPR---RYDWA 113
+RK+AI F Y G Y G+Q N P T+E +L AL+ +G +S+ + + + +W
Sbjct: 38 KRKVAIIFGYVGERYCGLQWNHLPEYPTVEEELLRALYRTGMISKENYEQEKVQQKLNWE 97
Query: 114 RSARTDKGVSAVGQVVSGRFCI----------DPPGLVERLNSNLPTQIRIFGYKRVTAS 163
R++RTDKGV A+ V+S + DP L S LP I ++ VT S
Sbjct: 98 RASRTDKGVHALRNVISVNVMLPYAKGSTTEYDPQEARRLLMSVLPHDIVVYEIVPVTRS 157
Query: 164 FNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLG 200
FNA C R Y Y LP FAL S R+ SL
Sbjct: 158 FNAYMLCGARTYEYYLPTFALMSLDEYSRDYFPPSLA 194
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAV-VRNCAPQSLIETALQKDVNINVPTAPEVGL 448
G++ ++ E+ GQSFML+QIRKMIG +A+ +P+ L + L K V VP AP GL
Sbjct: 434 GLEVVRIELHGQSFMLNQIRKMIGAVIAICAAGLSPEYLRDHLLNKAVRCGVPMAPANGL 493
Query: 449 YLDECIFASYNKK 461
+L F YN +
Sbjct: 494 FLSYLDFQRYNYR 506
>gi|261332259|emb|CBH15253.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 573
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 134/336 (39%), Gaps = 33/336 (9%)
Query: 59 RRKIAIFFAYCGVGYQGMQKN--PGAKTIEGDLEEALFHSGAVSERDRGNPR---RYDWA 113
+RK+AI F Y G Y G+Q N P T+E +L AL + +SE + + + +W
Sbjct: 32 KRKVAIIFGYIGERYCGLQWNHLPNYPTVEEELLRALRRADMISEENYAQQKVQQKLNWE 91
Query: 114 RSARTDKGVSAVGQVVSGRFCI----------DPPGLVERLNSNLPTQIRIFGYKRVTAS 163
R++RTDKGV A+ V S + D L LP+ I ++ VT S
Sbjct: 92 RASRTDKGVHALRNVFSLNVMLPYAKDSTSEFDVGEARRLLTEALPSDIVVYEIIPVTRS 151
Query: 164 FNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMG 223
FNA C R+Y Y LP FA +S SL ++ E G K G G
Sbjct: 152 FNAYMMCGSRKYEYYLPTFAFMNSEEYSNIYFPPSLAPSRPTLE--EVGFLGTKTAG--G 207
Query: 224 KRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSE 283
T G ND A Q + + NG+ E S++ + +
Sbjct: 208 AATNANG-NGNDATAGSKRQRLCEKEGGSSNGEVTACCTEQNNLEGNTSQTCQRSDTIDD 266
Query: 284 SVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEK 343
+ + + + + L + +S + R ++L E +
Sbjct: 267 TGGGNNNGGDSPQKFHDGLFEKMLVFHTIPESAMQVVARYRVTPQRL---------EHAR 317
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIIS 379
F K + G+H++HNFT KA DPS+ RYI S
Sbjct: 318 NIF----KLFEGTHSYHNFTPGGKASDPSSARYITS 349
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 387 NVEGIDFLKCEVVGQSFMLHQIRKMIG-LAVAVVRNCAPQSLIETALQKDVNINVPTAPE 445
N G++ ++ E+ GQSF+ +QIRKMIG +A P L + L K V P P
Sbjct: 430 NRVGLEVVRIELSGQSFLFNQIRKMIGTVASMCAAGLPPDYLRDHFLNKAVRCGTPMVPA 489
Query: 446 VGLYLDECIFASYNKK 461
GL+L F YN +
Sbjct: 490 NGLFLTYLDFQRYNYR 505
>gi|302844654|ref|XP_002953867.1| hypothetical protein VOLCADRAFT_94649 [Volvox carteri f.
nagariensis]
gi|300260975|gb|EFJ45191.1| hypothetical protein VOLCADRAFT_94649 [Volvox carteri f.
nagariensis]
Length = 709
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 38/162 (23%)
Query: 60 RKIAIFFAYCGVGYQGMQKNP---GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+++A Y G GY G+Q+ P G T+E +LE AL +GA+ R G + +W+R++
Sbjct: 2 QRVAFVCGYDGAGYFGLQRQPDNTGRPTVEQELERALVAAGALQARHAGALHKVNWSRTS 61
Query: 117 RTDKGVSAVGQVVSGRFCIDPPG-------------------------------LVERLN 145
RTDKGVSA VVS +D P LV +N
Sbjct: 62 RTDKGVSAAANVVS----LDIPSGAAAAAAAANAAGGRGNSGGGGGGAAADLTPLVNLVN 117
Query: 146 SNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSS 187
+ LP+ ++++ R +F A++ RRY YL+PV+ALD S
Sbjct: 118 AALPSAVKVWTATRPGPNFEARRAAYGRRYEYLVPVWALDPS 159
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 386 VNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETAL--QKDVNINVPTA 443
V V +++ VG F++HQIR+M+GLA+AV R AP + TAL + I VPTA
Sbjct: 430 VPVAPTPYVRIVFVGCGFLMHQIRRMVGLALAVARRTAPPDCMRTALDPARPFLITVPTA 489
Query: 444 PEVGLYLDECIFAS 457
P GL +D FA+
Sbjct: 490 PPTGLIMDRAFFAA 503
>gi|340505792|gb|EGR32098.1| tRNA pseudouridine synthase a, putative [Ichthyophthirius
multifiliis]
Length = 318
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 343 KKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQS 402
+++ N+ILK ++G+ ++HN+T + KA D +RYII+ + F++ GQS
Sbjct: 138 QEKINQILKKFIGTKSYHNYTKQLKAGDSKCKRYIINMKG-QIFEKNQEKFVRFTFFGQS 196
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
F+ HQIRKMIG+ V + I+ + +K+ V AP GL+L++ +F YNK+
Sbjct: 197 FIYHQIRKMIGMICMVFQKQLELDFIDKSFEKEFT-KVWLAPAHGLFLNQMVFDQYNKR 254
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 36/109 (33%)
Query: 112 WARSARTDKGVSA------VGQVVSGRFCIDP---------------------------- 137
W+R ARTDKGV A V V+ F DP
Sbjct: 9 WSRGARTDKGVHALINGINVKLAVTKEFLRDPDIEKEHVLENAINTKQQQKNAIERKNQI 68
Query: 138 --PGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+++ LNSNLP IRI K+VT F+ + C R Y Y+LP+F L
Sbjct: 69 NYDKIIQTLNSNLPQDIRIISLKQVTKKFDIRTACSHRIYEYILPLFML 117
>gi|403216363|emb|CCK70860.1| hypothetical protein KNAG_0F01920 [Kazachstania naganishii CBS
8797]
Length = 372
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 6/139 (4%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAK---TIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+R++A+ F Y G GMQ A T+E L +A+ +GA+ + + + W R+
Sbjct: 11 KRRVAVLFGYSGSQLYGMQYIADASRFPTVESRLFDAIRGTGAIMAHNSDDIYKNGWNRA 70
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
RTDKGV A+G VVS + + LV RLN+ LP IR++ + V F+ K C R Y
Sbjct: 71 CRTDKGVHALGNVVSLKLNLTA-DLVPRLNAQLPEGIRVWAIQSVNKQFSGKTACGGRWY 129
Query: 176 VYLLPVFAL--DSSSHRDR 192
Y+ P F L S HR R
Sbjct: 130 EYIFPSFILMGHSKFHRIR 148
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYI----ISFGADSVVNVEGIDFLKCEVVGQSFML 405
++ Y+G+HNFHNFTT+ + D +RYI +S + + + + + GQSFM+
Sbjct: 189 MQEYLGTHNFHNFTTKKQFTDRDVKRYISDVVVSQPFQRAAHPDEPELMSIRIRGQSFMI 248
Query: 406 HQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
HQIRKMI +AV P + L + +P P GL+LD +F SYN+K
Sbjct: 249 HQIRKMIAMAVIFHHYGIPPEQLNDIL-GETKQYIPKVPSSGLFLDFPLFDSYNRK 303
>gi|384251305|gb|EIE24783.1| pseudouridine synthase [Coccomyxa subellipsoidea C-169]
Length = 391
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 76/137 (55%), Gaps = 16/137 (11%)
Query: 75 GMQKNPGAK---TIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSG 131
G+Q G + T+E LEEA+F +G + E +RG + DW+RS+RTDKGV + V+
Sbjct: 7 GLQLQRGVEDITTVEAALEEAIFKAGGILESNRGALHKIDWSRSSRTDKGVHSCSTVIGL 66
Query: 132 RF-CI------DPPGL--VERLNSNLP-TQIRIFGYKRVTASFNAKKFCDQRRYVYLLP- 180
+ C+ DP GL +N +LP Q+R+ +R T F+A++ C+ R Y Y LP
Sbjct: 67 KMECVVESFESDPEGLGIAGEINKHLPGQQVRVLSVQRTTQKFDARQICEGRVYSYFLPT 126
Query: 181 -VFALD-SSSHRDRESV 195
+ L+ S DRE +
Sbjct: 127 SIIGLELDGSEEDRERL 143
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 65/165 (39%), Gaps = 43/165 (26%)
Query: 339 GEEEKKRFNRILKH----YVGSHNFHNFTTRT---------------------------- 366
G EE + R+L+ Y G H FHNFT R
Sbjct: 135 GSEEDRERLRLLRECLALYEGVHAFHNFTKRRLYRTSQRKQGRGAKRKGGGRVTAGAWNE 194
Query: 367 --KAEDPSAR---RYIISFGADSVVNV--EGIDFLKCEVVGQSFMLHQIRKMIGLAVAVV 419
DP R R+I S AD + G +K GQSFMLHQIR MIG AVAV
Sbjct: 195 ERDEADPITRSHFRHIFSATADDPTPLVPGGTPCIKVVFSGQSFMLHQIRHMIGAAVAVA 254
Query: 420 RNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKD 464
R P +E L+ +P AP L L E + +W+D
Sbjct: 255 RGTIPLDYVEGCLRSPSRAIMPLAPPHVLVLSETVMM----QWRD 295
>gi|357491363|ref|XP_003615969.1| Pseudouridylate synthase [Medicago truncatula]
gi|355517304|gb|AES98927.1| Pseudouridylate synthase [Medicago truncatula]
Length = 483
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 17/212 (8%)
Query: 59 RRKIAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
++K+ + Y G ++G+Q + TIE +LE A+F G + + + G+ + +W RS
Sbjct: 56 KKKVVMRVGYIGTDFRGLQIQRNDHKLSTIEKELETAIFKVGGIRDSNYGDLDKINWGRS 115
Query: 116 ARTDKGVSAVGQVVSGRFCI-------DPPG--LVERLNSNLPTQIRIFGYKRVTASFNA 166
+RTDKGV ++ ++S + I D G + +NS LP IR+F T F+
Sbjct: 116 SRTDKGVHSLSTMISFKMEIPENAWKGDDYGIEMANHINSYLPNSIRVFSVLPSTKRFDP 175
Query: 167 KKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSE--RGRKVIGVMGK 224
+K C R+Y YLLP + SH + + N ++ E V V K
Sbjct: 176 RKECSMRKYSYLLPADIIGVQSHFSEDETDFHISEFNSILGAFEGDHPFHNYTVRSVYRK 235
Query: 225 RTYQLGLPSNDENASLNSQVKVDTVVSTCNGD 256
+ + P N +++ ++VS C+ +
Sbjct: 236 KHHARKSPG---NGGMSNMTGSSSLVSACDSE 264
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%)
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLY 449
G ++++ +V G SFMLHQIRKM+G AVAV RN P+ + +L K I +P AP L
Sbjct: 328 GYNYIEIDVWGDSFMLHQIRKMVGTAVAVKRNSIPKDIFLLSLIKFSRIVLPIAPPEVLI 387
Query: 450 L 450
L
Sbjct: 388 L 388
>gi|148238175|ref|NP_001088988.1| pseudouridylate synthase 1 [Xenopus laevis]
gi|57032536|gb|AAH88978.1| LOC496371 protein [Xenopus laevis]
Length = 167
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 6/101 (5%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RK+ AY G GY GMQ+N G KTIE +L +AL S + + + ++ + R
Sbjct: 54 KRKVVFLIAYSGKGYHGMQRNVGTSQFKTIEDELVQALVLSECIPDNHAEDMKKMSFQRC 113
Query: 116 ARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIF 155
ARTDKGVSA GQVVS + + ID +VE++N NLP+ IRI
Sbjct: 114 ARTDKGVSAAGQVVSLKIWLID--NVVEKINENLPSHIRIL 152
>gi|422293209|gb|EKU20509.1| trna pseudouridine synthase, partial [Nannochloropsis gaditana
CCMP526]
Length = 376
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 52/75 (69%)
Query: 56 LCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
L ++K+A+ YCG +QGMQ NPGA TIE +LE+A++ +G + E + G+ ++ W+RS
Sbjct: 87 LGNKKKVAMIIGYCGTDFQGMQMNPGAITIEAELEKAMYEAGCIKEANFGSLQKIGWSRS 146
Query: 116 ARTDKGVSAVGQVVS 130
RTDKGV A QVV
Sbjct: 147 GRTDKGVHAAAQVVG 161
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 144 LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
+N LP IRI G R T FNAK C +RRY Y
Sbjct: 342 INRQLPPSIRIHGILRATRGFNAKNDCTRRRYCYW 376
>gi|145354770|ref|XP_001421649.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581887|gb|ABO99942.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 556
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 87/182 (47%), Gaps = 28/182 (15%)
Query: 19 RQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQK 78
R +PDP SA T LIP A + K++ +AI AY G GY+G
Sbjct: 60 RHQPDP-----SAHPTH-----LIPDDLRAPDVDDAR--KKKPVAIVLAYVGQGYKGNTH 107
Query: 79 N---PGAKTIEGDLEEALFHSGAV---SERDRGNPRRYDWARSARTDKGVSAVGQVVSGR 132
N P T++ +E+ALF G + + R RG +R W+RS+RTDKGVS++ VVS R
Sbjct: 108 NAQAPRGTTVDDVVEDALFAWGGILMPNYRSRGL-QRLKWSRSSRTDKGVSSLCTVVSLR 166
Query: 133 FCIDPPGLVE---------RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
IDP + + +LP + F SF A++ C R Y YLLP
Sbjct: 167 AEIDPEVWTKDVEARETAREITKHLPEDVECFAVYNTPKSFQARRECIMRTYEYLLPARV 226
Query: 184 LD 185
LD
Sbjct: 227 LD 228
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 371 PSARRYIISF--GAD----SVVNVEGID-----FLKCEVVGQSFMLHQIRKMIGLAVAVV 419
PS R I +F GAD + N +G F++ V G+SFML+QIRKMI AVAV
Sbjct: 355 PSHFRRIHNFTAGADVERMEITNDDGSKTTSEPFIRVSVRGESFMLYQIRKMIASAVAVS 414
Query: 420 RNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASY 458
P + +L + +P AP LYL + F +
Sbjct: 415 LGHCPLEFLPASLSRPCRAAMPLAPASTLYLYDVEFMKF 453
>gi|50294374|ref|XP_449598.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528912|emb|CAG62574.1| unnamed protein product [Candida glabrata]
Length = 317
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Query: 62 IAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKG 121
+A+ Y G GYQG+Q NP A TI+ +L +AL + +S+ + + + ++R+ RTDKG
Sbjct: 1 MALVLGYLGTGYQGIQYNPPAHTIDNELFKALVATNCISQSNSDDFSKSSFSRATRTDKG 60
Query: 122 VSAVGQVVS---GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
V A+ +V+ R+ + P + LN LP IRI+ V FNA+ R Y Y+
Sbjct: 61 VHALTNLVALKMQRYEV-PQQVKAELNEILPDDIRIWDVVPVKKKFNARVMAGTRHYRYV 119
Query: 179 LPVFALDSSSHRD 191
+P F L H D
Sbjct: 120 IPTFLLQCGPHSD 132
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 345 RFNRILKHYVGSHNFHNFTTR---TKAEDPSARRYIISFGADSVVNVEG-IDFLKCEVVG 400
RF I ++G+HN++NFT R T A+ P R++ S + G +L + G
Sbjct: 140 RFKNIWNMFLGTHNYYNFTPRRKDTNADSPQNMRHMYSIQVSDPFTIAGSTQWLSIAIHG 199
Query: 401 QSFMLHQIRKMIGLAVA-------------VVRNCAPQSLIETALQKDVNINVPTAPEVG 447
QSF+LHQIRKM+ A++ ++ P TAL +P AP G
Sbjct: 200 QSFLLHQIRKMVHYALSEYHRSSSDTKSMELLETVDPDLTSATALDTPTEQYIPLAPAAG 259
Query: 448 LYLDECIFASYNKK 461
LYL F YN +
Sbjct: 260 LYLHHPTFEGYNNQ 273
>gi|330835922|ref|XP_003292011.1| hypothetical protein DICPUDRAFT_156689 [Dictyostelium purpureum]
gi|325077781|gb|EGC31472.1| hypothetical protein DICPUDRAFT_156689 [Dictyostelium purpureum]
Length = 539
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 28/201 (13%)
Query: 2 ENAETNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKR----QLC 57
EN N + LP P P + ++L SD+ R +I + R ++
Sbjct: 64 ENDRNNLKSLPGPQFIPVMTEEKQKL------ASDESRRVIEGHKNELNEFYRNNREEIE 117
Query: 58 K-------RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPR 108
K ++ A+ F Y G G+ G+ K+ K IE +E+ALF +G ++ + G+
Sbjct: 118 KNLEINTIKKPFALCFGYDGTGFYGLSYNKDLKYKAIENAIEKALFINGHIAPSNVGDLS 177
Query: 109 RYDWARSARTDKGVSAVGQVVSGRFCIDPP-----GL----VERLNSNLPTQIRIFGYKR 159
R W+RS+RTDKGV ++ ++S +D GL +E +N +LP +R+ R
Sbjct: 178 RIKWSRSSRTDKGVHSLSTLISCFILVDEKTNQREGLSKETIESINKHLPESVRLLSGTR 237
Query: 160 VTASFNAKKFCDQRRYVYLLP 180
++ SF A++ +R Y Y++P
Sbjct: 238 ISKSFRARRGVCERTYHYMVP 258
>gi|328871318|gb|EGG19689.1| hypothetical protein DFA_00267 [Dictyostelium fasciculatum]
Length = 568
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 12/131 (9%)
Query: 62 IAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+ + FAY G GY G++ + T+E LE ALF SG + + G+P R +W RS+RT
Sbjct: 132 VNMLFAYVGTGYHGLEFHMTDQDYPTLENCLERALFLSGMILPTNFGDPSRLNWRRSSRT 191
Query: 119 DKGVSAVGQVVSGRFCID------PPGL---VERLNSNLPTQIRIFGYKRVTASFNAKKF 169
DKGV ++ ++ ID P + V +NSNLP +RI + SF+ ++
Sbjct: 192 DKGVHSMSTIIKANLEIDRSRMLTPEKIADYVALINSNLPDALRIISMEMTKKSFDPRRQ 251
Query: 170 CDQRRYVYLLP 180
R Y Y+LP
Sbjct: 252 GIARTYHYVLP 262
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 378 ISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVN 437
ISF + G +++K + G+SF+ +QIRKM+G +A+ +E AL +
Sbjct: 378 ISFKLEETFQESGQEWVKFVIEGESFIQYQIRKMMGFVLAITNGKTDLKTLELALHSPFS 437
Query: 438 INVPTAPEVGLYLDECIF 455
I+ P AP LYL +C F
Sbjct: 438 IHAPIAPPNPLYLFDCAF 455
>gi|116794266|gb|ABK27072.1| unknown [Picea sitchensis]
Length = 212
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 15/164 (9%)
Query: 7 NTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADST---TKRQLCKRRKIA 63
N+ LP +SP + P + +S TSTS +P +S T+ + +RK+A
Sbjct: 27 NSRPLPFFKISPTIQNSPWTICVSITSTSIKAEPDLPEVESENSPNNQTRWKPITKRKVA 86
Query: 64 IFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+ Y G Y+G+Q + TIE +LE+A+ +G + E + GN + W RS+RTDK
Sbjct: 87 MRIGYVGTNYRGLQIQRDSASTITIEDELEKAILKAGGMLESNYGNLHKLGWRRSSRTDK 146
Query: 121 GVSAVGQVVSGRFCI-------DPPG--LVERLNSNLPTQIRIF 155
GV ++ V++ + I DP G L + +N +LP IRIF
Sbjct: 147 GVHSLATVIAMKMEIPDGAWEEDPDGIALADVINRHLPYNIRIF 190
>gi|300175206|emb|CBK20517.2| unnamed protein product [Blastocystis hominis]
Length = 282
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 319 AEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYII 378
A++RS G ++K Y R + +VG+HNFHN+T + D SA+R+I+
Sbjct: 143 AQDRSFGG--CVVKDEWPAYLSLALSRLRACMSLFVGTHNFHNYTVGKSSADSSAQRHIL 200
Query: 379 SFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNI 438
+ + +++ + GQSFMLHQIRKMIG+A+ V R + ++L + +
Sbjct: 201 GISVSDPIRIHDGLYIRVCLEGQSFMLHQIRKMIGIAIEVARGRCSLHTVNSSLSRG-TM 259
Query: 439 NVPTAPEVGLYL 450
P AP GL+L
Sbjct: 260 FTPMAPSTGLFL 271
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 141 VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSS 188
V+R+NS LP+ IR+F R T +FNAK FCD+R+Y Y+LP+ L S
Sbjct: 23 VDRINSCLPSDIRVFKILRTTKNFNAKNFCDRRQYEYILPIETLSPFS 70
>gi|242223970|ref|XP_002477524.1| predicted protein [Postia placenta Mad-698-R]
gi|220722803|gb|EED77277.1| predicted protein [Postia placenta Mad-698-R]
Length = 407
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 77 QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCID 136
Q +P +TIEG L AL GAVS+ + +P + + R+ARTD GV A G VVS +
Sbjct: 1 QPDPKLRTIEGVLFNALVKVGAVSQDNADDPIKVNLGRAARTDAGVHAAGNVVSMKLITA 60
Query: 137 PPG---LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 193
PG L+ R+N LP +IR++ RV SFNA+ R+Y Y P + +
Sbjct: 61 IPGVGDLISRVNEELPPEIRLWNVLRVQNSFNART----RKYTYFFPSYLMIPPKPGSGL 116
Query: 194 SVMASLGSGNEL 205
+A GNEL
Sbjct: 117 FQIAQQNDGNEL 128
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
+ + GSHNFHNFT D S R+I S V G +++ GQSFMLHQ +
Sbjct: 167 RKFEGSHNFHNFTVGRDFGDRSCMRHIKSVEIADPVVYGGTEWVSVLFHGQSFMLHQRKM 226
Query: 411 MIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
M L +A PQ++ E + V I P P +GL L+ IF +Y ++
Sbjct: 227 MSALVLACRTGSPPQTIEEMYGPRTVFI--PKMPALGLLLEYPIFDTYTRR 275
>gi|308812814|ref|XP_003083714.1| PUSH_ARATH Putative tRNA pseudouridine synthase (ISS) [Ostreococcus
tauri]
gi|116055595|emb|CAL58263.1| PUSH_ARATH Putative tRNA pseudouridine synthase (ISS) [Ostreococcus
tauri]
Length = 543
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAV---SERDRGNPRRYD 111
K++ +A+ AY G GY+G N A T++ +E+ALF G + + R +G +R
Sbjct: 86 KKKPVALLLAYVGAGYKGNTHNAQAVRGTTVDDVVEDALFRWGGILLPNYRSKGL-QRLK 144
Query: 112 WARSARTDKGVSAVGQVVSGRFCIDPP---------GLVERLNSNLPTQIRIFGYKRVTA 162
W+RS+RTDKGVS++ VVS R IDP + +LP + F
Sbjct: 145 WSRSSRTDKGVSSLCTVVSLRAEIDPEVWTTDVEARATARDITKHLPDDVECFAVYNTPK 204
Query: 163 SFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCL 209
SF A++ C R Y YLLP L ES L NE + C
Sbjct: 205 SFQARRECVMRTYEYLLPARVLGLDGDAMDESGRRRLALFNEALSCF 251
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 359 FHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAV 418
HNF+ ++ E R I+ S E F++ V G+SFML+QIRKMI AVAV
Sbjct: 357 IHNFSAGSEVE-----RMTITNEDGSTTQSEP--FVRVSVRGESFMLYQIRKMIASAVAV 409
Query: 419 VRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASY 458
P + +L + +P AP LYL + F ++
Sbjct: 410 SLGHCPLEFLPASLARPCRAAMPLAPASTLYLYDVEFMNF 449
>gi|212721194|ref|NP_001132024.1| uncharacterized protein LOC100193430 [Zea mays]
gi|194693226|gb|ACF80697.1| unknown [Zea mays]
gi|414866705|tpg|DAA45262.1| TPA: hypothetical protein ZEAMMB73_241728 [Zea mays]
Length = 369
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 135/332 (40%), Gaps = 70/332 (21%)
Query: 136 DPPG--LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 193
DP G L +NSNLP +R+F SF+ ++ C R Y YLLP + E
Sbjct: 16 DPDGIALASFINSNLPDNVRVFSILPAQRSFDVRRECLYREYFYLLPAEIIGIKDDYSSE 75
Query: 194 SVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTC 253
+ L N+++K G N + ++ K V++
Sbjct: 76 EMQEHLSEFNKILK----------------------GFEGNHPFHNYTARAKYRKVLAG- 112
Query: 254 NGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKN 313
RH + + K++S ++T + +SE + + D L++ S
Sbjct: 113 ---RHRRAKGASSALKSMS-------------SDTGMAESSSEESTSPDHDEDLNISSIF 156
Query: 314 DSKVMAEERSVNG-----EEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKA 368
DS + E+ VNG E++L + + + +E R N SH
Sbjct: 157 DSGI-PEDTRVNGILKLSEDRLQIQARWLHEPDESDRLN-------ASHF---------- 198
Query: 369 EDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLI 428
R II+ + GI F++ + G SFMLHQIRKM+G AV V R P+ +I
Sbjct: 199 ------RDIITCSCGDLQTSSGIQFVELTICGVSFMLHQIRKMVGTAVTVKRGLLPRDII 252
Query: 429 ETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
E +L K I +P AP L L + F + +K
Sbjct: 253 ELSLAKFSRIVLPIAPSEVLVLKDNSFCTKSK 284
>gi|294897084|ref|XP_002775815.1| pseudouridylate synthase, putative [Perkinsus marinus ATCC 50983]
gi|239882168|gb|EER07631.1| pseudouridylate synthase, putative [Perkinsus marinus ATCC 50983]
Length = 708
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 22/150 (14%)
Query: 53 KRQLCKRRKIAIFFAYCGVGYQGMQKNPG----AKTIEGDLEEALFHSGAVSERDRGNPR 108
K QL +RK A+ + G Y+G+Q N +E DL A+ +G V + D
Sbjct: 17 KLQLNAKRKCALVVGFNGTKYRGLQMNADNCDRIDYVESDLLGAMKRAGVV-KPDVVRLD 75
Query: 109 RYDWARSARTDKGVSAVGQVVSGRFCIDP-----------------PGLVERLNSNLPTQ 151
W RS+RTD GVSA VVS + + P +VE +N LP +
Sbjct: 76 EIQWTRSSRTDAGVSAARIVVSAKILVHEAPEVKGNRQADRVNRTYPEVVEAINKELPRE 135
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPV 181
I++F ++ ASFNA+K C+ R Y Y +P+
Sbjct: 136 IKVFNCMKICASFNAQKSCNWRHYSYYMPM 165
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 377 IISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQ-SLIETALQKD 435
I SF A + G +++ +V GQ F+ +QIR MIG +A R P S I+ A+ +
Sbjct: 359 IHSFTATPIEMGNGEKWVRVDVRGQFFLYNQIRLMIGAGIAYARGVFPSISCIQFAIDTN 418
Query: 436 VNINVPTAPEVGLYLDECIFASYNKK 461
+ P AP GL L F + +
Sbjct: 419 YKFHSPLAPACGLILHTSGFTGMDTR 444
>gi|290979041|ref|XP_002672243.1| predicted protein [Naegleria gruberi]
gi|284085818|gb|EFC39499.1| predicted protein [Naegleria gruberi]
Length = 483
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 339 GEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEG-IDFLKCE 397
E++ ++ N +L H+ G H FHNFT K S+RR++ + N+EG + + E
Sbjct: 284 NEQKCQKLNELLGHFEGIHLFHNFTVDAKPGSDSSRRHVKTLKIIEQ-NLEGDLPHVVIE 342
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAP------------QSLIETALQKDVNINVPTAPE 445
+ G+SFMLHQIR MIG +A++R AP E + + +P AP
Sbjct: 343 ISGRSFMLHQIRMMIGTVIALMRGMAPNMNTTVQDNTIVNDFFENLFKAQTEVLLPMAPS 402
Query: 446 VGLYLDECIFASYN 459
GL+LD F ++N
Sbjct: 403 EGLFLDNLDFPNFN 416
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 41/168 (24%)
Query: 62 IAIFFAYCGVGYQGMQ--------KNPGAKTIEGDLEEALFHSGAVSERDRG-------- 105
I F+Y G+ + G+Q K+P TIE L + L+ S S+ ++
Sbjct: 101 FVISFSYNGIPFNGLQIQNGENLVKHPHLLTIEAVLLDILYGSNGESDFEQDETIIRYTK 160
Query: 106 --NPRRYDWARSARTDKGVSAVGQVVS------------GRFCIDPPGLVERLNS----- 146
N + R+ RTD+GVSAV + F + L + LN
Sbjct: 161 SKNCKDIRLQRACRTDRGVSAVRNAFACVMTLPNTQNHKDTFKFNNEELCKTLNDRINNH 220
Query: 147 ------NLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSS 188
NL QI+IF +RV + F +C RRY+Y+LP+ ALD SS
Sbjct: 221 VRIKNLNLMDQIKIFNIQRVPSRFVLHHWCQFRRYLYVLPLSALDLSS 268
>gi|302834750|ref|XP_002948937.1| hypothetical protein VOLCADRAFT_104122 [Volvox carteri f.
nagariensis]
gi|300265682|gb|EFJ49872.1| hypothetical protein VOLCADRAFT_104122 [Volvox carteri f.
nagariensis]
Length = 669
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 59 RRKIAIFFAYCGVGYQGMQKN-PGAK--TIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+R IA+ Y G ++G+Q N GA T+E LE A+F +G ++E + G+ ++ W+R+
Sbjct: 219 KRSIALHVGYVGTAFKGLQVNRSGAPDSTVEEVLERAVFEAGLIAESNFGDLKKVKWSRN 278
Query: 116 ARTDKGVSAVGQVVSGR--------FCIDPPGL--VERLNSNLPTQIRIFGYKRVTASFN 165
+RTDKGV +V VV R F +DP GL LN+ LP Q+R+F +RV FN
Sbjct: 279 SRTDKGVHSVSTVVGLRVLLRGDEGFDLDPEGLEVAADLNTRLPPQVRVFSAQRVQKKFN 338
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 23/159 (14%)
Query: 304 DLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFT 363
D L+ D ++ + AE +G + ++ + Y + E KR ++H+
Sbjct: 414 DAPLEDDDEDGATEGAESSDDDGPGRWVQSCRWLYEKSEDKRDRVTVRHF---------- 463
Query: 364 TRTKAEDPSARRYIISFGADSVVNV--EGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRN 421
R I SF AD + G+ ++ V G SFMLHQIR MIG A+AV R
Sbjct: 464 -----------RTITSFTADDPAPLVPGGVPCVRLRVRGMSFMLHQIRHMIGGALAVARG 512
Query: 422 CAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
P L+ +L + VP AP L L C F + K
Sbjct: 513 SLPLPLLRASLAGQARVTVPRAPPHTLILAGCTFPPFRK 551
>gi|428165192|gb|EKX34193.1| hypothetical protein GUITHDRAFT_80757 [Guillardia theta CCMP2712]
Length = 380
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTT-RTKAEDPSARRYIIS--FGADSVVNVEGID 392
F +EE + +L+ Y G+H+FHNFT + E P+ + ++S VN EG++
Sbjct: 168 FRISDEEIAKIAAVLRIYEGTHDFHNFTADKCSDEGPTETQRVVSRFVPGQKRVNAEGVE 227
Query: 393 FLKCEVVGQSFMLHQIRKMIGLAVAVV---RNCAPQSLIETALQKDVNINVPTAPEVGLY 449
+L EV G SF+ HQIRKM+GLA+ + R+ + + VP AP +GL
Sbjct: 228 YLGLEVEGDSFIYHQIRKMVGLAIFALRYKRDDERVQFVHDIVHDQSRHYVPLAPSLGLM 287
Query: 450 LDECIFASYNK 460
LD +F NK
Sbjct: 288 LDRVLFRKENK 298
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Query: 63 AIFFAYCGVGYQGMQK-NPGAKTIEGDLEEALFHSGAVSERD----------RGNPRRYD 111
A+ Y G Y G+QK + G TIE +LE AL GA+ G+ +
Sbjct: 22 AVLCGYVGSRYHGLQKHDKGPPTIEQELESALIKCGALVYESGITQNEFGLKNGDLSKVK 81
Query: 112 WARSARTDKGVSAVGQVVSGRFCIDPPG-LVERLNSNLPTQIRIFGYKRVTASFNAKKFC 170
W ++RTDKGV AVGQ ++ ++ G E +N+ + I ++G K+V K F
Sbjct: 82 WTHASRTDKGVHAVGQCIALSMQLNFAGKTWEEQQANIKSDIVVYGIKKV-----PKGFY 136
Query: 171 DQRR 174
D RR
Sbjct: 137 DDRR 140
>gi|389601586|ref|XP_001562276.2| pseudouridylate synthase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505105|emb|CAM39306.2| pseudouridylate synthase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 689
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 123/252 (48%), Gaps = 31/252 (12%)
Query: 62 IAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNP--RRYDWARSA 116
I + Y G G++G+Q P T+EG L +AL +G +++ RG P + +ARS
Sbjct: 27 IGLCLLYSGSGFRGLQIQVHAPTCHTVEGMLIQALKDTGIIADVVRGRPAGEHHHFARSC 86
Query: 117 RTDKGVSAVGQVVS---GRFCID----PPGLVERLNSNLPTQIRIFGYKRVTASFNAKKF 169
RTD+GV A+ +VS + D G+ ERLN LP +R+ +++ SF +
Sbjct: 87 RTDRGVHAIRNMVSLFVPKEVFDKVGQSGGICERLNRRLPATVRVASVMQLSGSFIPRHC 146
Query: 170 CDQRRYVYLLPVFALDSSSHRDRESVMASLGSG-----NELVKCLECSERGRKVIGVMGK 224
C++R Y Y+LP++AL D + + SG L K ++R + + +
Sbjct: 147 CNRRVYRYMLPLYALLPPC--DTWAAVEKYYSGCLAYVQTLAKEAVAAQRTQHGVPYVDL 204
Query: 225 RTYQLGLPSNDENASLNSQVK-VDTVVSTCN--------GDR--HNTNLESVESNKTISE 273
PS D AS +S ++ + + CN G R HN +++ ++SN++
Sbjct: 205 EKMSAAEPSADGQASQSSWLRHLQASTNRCNQLLRSHFTGSRRYHNFSVD-IDSNRSGVS 263
Query: 274 SVMVENANSESV 285
+ +++ A+ E++
Sbjct: 264 AKVIQPASDEAL 275
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 391 IDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
+ FL ++ G+SF+L+ IRK+IG +AV R A +S++E AL + + P AP LYL
Sbjct: 363 LPFLIFQIEGESFLLNMIRKVIGSLLAVCRG-ARESILEEALSPERRVTTPLAPGPYLYL 421
Query: 451 DECIFASYNK 460
+ + Y++
Sbjct: 422 AQSTYHGYDR 431
>gi|123483294|ref|XP_001323995.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
gi|121906870|gb|EAY11772.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
Length = 346
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 52 TKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYD 111
TK+ C + I+F Y G GY G+Q N +TI+ DL E L SG + E +
Sbjct: 27 TKKPAC----VVIYFRYIGTGYHGLQYNEKVRTIDSDLFEGLEKSGILPEGSYKRRGKIA 82
Query: 112 WARSARTDKGVSAVGQVV---SGRFC-IDPPGLVERLNSNLPTQ--IRIFGYKRVTASFN 165
W ++RTD GV A GQ++ S C ++ + E +N NLP+ I+I + F
Sbjct: 83 WNEASRTDAGVHACGQLICFKSYEICDMECSQIPELINKNLPSDSTIKIMSCLCTNSPFP 142
Query: 166 AKKFCDQRRYVYLLPVFALDSS 187
K F R+Y YLLP+ S+
Sbjct: 143 VKDFATHRKYNYLLPLHVFSST 164
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 348 RILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQ 407
+I ++G HNFHN+T T A+R+I F V + G +++ + G SFML+Q
Sbjct: 175 KICPLFIGQHNFHNYTNGTPKTYKGAQRFITDFTFGDVFTINGEEYVLFYIRGISFMLNQ 234
Query: 408 IRKMIGLAVAVVRN-CAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWK 463
IRKMI + A N P+ + + ++ I + P GL+LD+ + Y K K
Sbjct: 235 IRKMISMVTAASFNQVTPEEVSRSLTEETCRIQL--LPGDGLFLDQIEYEEYMSKLK 289
>gi|19074166|ref|NP_584772.1| PSEUDOURIDYLATE SYNTHASE 2 [Encephalitozoon cuniculi GB-M1]
gi|19068808|emb|CAD25276.1| PSEUDOURIDYLATE SYNTHASE 2 [Encephalitozoon cuniculi GB-M1]
Length = 345
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
Query: 335 GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFL 394
G+ E++ + F+ IL+ YVG+ +FHNFT + + RYI S G++++
Sbjct: 167 GYTSSEDDTRVFSTILQKYVGTKDFHNFTKLNN--EKGSTRYIKSIIVSDTYTDNGVEYV 224
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNC--APQSLIETALQKDVNINVPTAPEVGLYLDE 452
K + GQSF+LHQIRKM+ AV + R A S + + NI+VP P L LD+
Sbjct: 225 KISITGQSFLLHQIRKMVLFAVLLCRYSRNAVDSKFDMVFSRH-NIHVPKGPSEYLLLDK 283
Query: 453 CIF 455
IF
Sbjct: 284 PIF 286
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ + Y G Y G+Q N T+E + E L A+SER+ G+PR+ S+RTDK
Sbjct: 4 RVGLLVGYDGSRYHGLQFNKDLDTVEKKIVECLLRMDAISERNAGDPRKIHIKSSSRTDK 63
Query: 121 GVSAVGQVVSGRFCID-PPGLVERLNSNLPTQ-IRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A +VS + + P LV L L + I ++ R+T S K R Y Y+
Sbjct: 64 GVHAALNLVSVKIELGVSPELVSGLRELLSKEGIHLYDIVRLTKSIVPSKQAISRTYEYI 123
Query: 179 LPVFAL 184
+P + L
Sbjct: 124 VPTYFL 129
>gi|449328970|gb|AGE95245.1| pseudouridylate synthase 2 [Encephalitozoon cuniculi]
Length = 345
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
Query: 335 GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFL 394
G+ E++ + F+ IL+ YVG+ +FHNFT + + RYI S G++++
Sbjct: 167 GYTSSEDDTRVFSTILQKYVGTKDFHNFTKLNN--EKGSTRYIKSIIVSDAYTDNGVEYV 224
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNC--APQSLIETALQKDVNINVPTAPEVGLYLDE 452
K + GQSF+LHQIRKM+ AV + R A S + + NI+VP P L LD+
Sbjct: 225 KISITGQSFLLHQIRKMVLFAVLLCRYSRNAVDSKFDMVFSRH-NIHVPKGPSEYLLLDK 283
Query: 453 CIF 455
IF
Sbjct: 284 PIF 286
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ + Y G Y G+Q N T+E + E L A+SER+ G+PR+ S+RTDK
Sbjct: 4 RVGLLVGYDGSRYHGLQFNKDLDTVEKKIVECLLRMDAISERNAGDPRKIHIKSSSRTDK 63
Query: 121 GVSAVGQVVSGRFCID-PPGLVERLNSNLPTQ-IRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A +VS + + P LV L L + I ++ R+T S K R Y Y+
Sbjct: 64 GVHAALNLVSVKIELGVSPELVSGLRELLSKEGIHLYDIVRLTKSIVPSKQAISRTYEYI 123
Query: 179 LPVFAL 184
+P + L
Sbjct: 124 VPTYFL 129
>gi|159478785|ref|XP_001697481.1| predicted protein [Chlamydomonas reinhardtii]
gi|158274360|gb|EDP00143.1| predicted protein [Chlamydomonas reinhardtii]
Length = 446
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 75/143 (52%), Gaps = 17/143 (11%)
Query: 84 TIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCID------- 136
TIE LE+ALF +G +SE + G+ + W+R++RTDKGV ++G V+ R +D
Sbjct: 63 TIEQVLEKALFAAGCISEANFGSFSKIRWSRASRTDKGVHSLGTVMGLRMLVDDAKYVAG 122
Query: 137 PPG------LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHR 190
P G L E +N++LP QIR+F + F+A+ C+ R Y Y LPV +D
Sbjct: 123 PDGDCEGLALAEAVNTHLPPQIRVFTTNK---KFSARHMCEGRVYQYYLPVSMIDLKCDG 179
Query: 191 DRESVMASLGSGNELVKCLECSE 213
E L + +KC E S
Sbjct: 180 SEEDAQ-RLAKFRDALKCYEGSH 201
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 67/167 (40%), Gaps = 45/167 (26%)
Query: 337 CYGEEEKK----RFNRILKHYVGSHNFHNFTTRTKAE----------------------- 369
C G EE +F LK Y GSH FHNFT R +
Sbjct: 177 CDGSEEDAQRLAKFRDALKCYEGSHPFHNFTKRVTYQPGGSNVQFRPGDGVVGRYGPYGR 236
Query: 370 ----------DPSAR------RYIISF-GADSVVNVEGID-FLKCEVVGQSFMLHQIRKM 411
DP R R I SF AD VEG + L EV GQSFMLH IR M
Sbjct: 237 VLLLRWQTEVDPRDRITQTFYRRIYSFTAADPKPMVEGGEPCLLLEVSGQSFMLHHIRHM 296
Query: 412 IGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASY 458
IG AVAV + ++ +L + +P AP L L +C F +
Sbjct: 297 IGAAVAVTLGLISKEVLLGSLTPPARVTLPRAPPHTLLLSDCSFGRF 343
>gi|308161589|gb|EFO64028.1| Pseudouridylate synthase 1 [Giardia lamblia P15]
Length = 467
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 69/141 (48%), Gaps = 16/141 (11%)
Query: 58 KRRKIAIFFAYCGVGYQGMQ------KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYD 111
K IA+ Y G Y G Q +P +T+EG++ A+ +G + RD +
Sbjct: 37 KLVHIAVALGYVGTRYSGSQWQAPSATHPDIRTVEGEIYTAIEAAGLLYGRDI---KSIG 93
Query: 112 WARSARTDKGVSAVGQVVSGRFCIDPPG---LVERLNSNLPTQIRIFGYKRVTASFNAKK 168
W R +RTDK VSA V F PG LV+ L +LP I IFG RV F+AK
Sbjct: 94 WTRCSRTDKSVSAAMAV----FSFFGPGHLDLVQLLQPHLPKDISIFGTVRVPPKFSAKM 149
Query: 169 FCDQRRYVYLLPVFALDSSSH 189
C R Y Y++P+ L SSH
Sbjct: 150 ACTSRTYEYMMPLVFLLPSSH 170
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 26/135 (19%)
Query: 359 FHNFTTRTKAEDPSARRYI-------ISFGADSVVNVEGID---FLKCEVVGQSFMLHQI 408
+HNFT S+R+ + +F + + +GI + K + GQ+F+++QI
Sbjct: 267 YHNFTEDNVQPSASSRKILSCSVSLSTTFDSQNSATKDGIATELYTKITICGQAFLMYQI 326
Query: 409 RKMIGLAVAVVRNCAPQSLIETALQ-KDVNINVPTAPEVGLYLDEC-------------- 453
R+M+G VA++R P S + A Q + ++ + TAP L L +
Sbjct: 327 RRMMGALVAILRGWIPVSFLYFAFQTRTKHLRISTAPSPYLLLKQPNYEHLLSKKDFTQH 386
Query: 454 -IFASYNKKWKDSHE 467
+F S +KK KD E
Sbjct: 387 GVFVSEDKKIKDMAE 401
>gi|300123845|emb|CBK25116.2| unnamed protein product [Blastocystis hominis]
Length = 282
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
Query: 319 AEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYII 378
A++RS G + K Y R + +VG+HNFHN+T + D SA+R+I+
Sbjct: 143 AQDRSFGG--CVAKDEWPAYLSLALSRLRACMSLFVGTHNFHNYTVGKSSADSSAQRHIL 200
Query: 379 SFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNI 438
+ + +++ + GQSFMLHQIRKMIG+A+ V R ++L + +
Sbjct: 201 GISVSDPIRIHDGLYIRVCLEGQSFMLHQIRKMIGIAIEVARGRCSLHTANSSLSRG-TM 259
Query: 439 NVPTAPEVGLYL 450
P AP GL+L
Sbjct: 260 FTPMAPSTGLFL 271
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 141 VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSS 188
V+R+NS LP+ IR+F R T +FNAK FCD+R+Y Y+LP+ L S
Sbjct: 23 VDRINSCLPSDIRVFKILRTTKNFNAKNFCDRRQYEYILPIETLSPFS 70
>gi|428171114|gb|EKX40033.1| hypothetical protein GUITHDRAFT_113769 [Guillardia theta CCMP2712]
Length = 508
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNP-GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+R +A+ Y G Y G+Q + G TI+G++ + + +G +S+ ++ + ++ W+ S+R
Sbjct: 11 KRNLALLLGYKGTKYHGLQISAQGLPTIQGEIFNSFYTAGMISDSNKDDSQKLKWSSSSR 70
Query: 118 TDKGVSAVGQVVSGRFCID-------PPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFC 170
TDKGV V S + +D P ++R N+ LP IRI R++ + C
Sbjct: 71 TDKGVHTSFCVCSFKLLMDETPQYRVSPAEIQRWNTFLPGDIRILQAFRLSKNARINNMC 130
Query: 171 DQRRYVYLLPVFALD 185
QR Y YL+P L+
Sbjct: 131 TQREYEYLVPFNVLN 145
>gi|410722308|ref|ZP_11361613.1| pseudouridylate synthase I [Methanobacterium sp. Maddingley MBC34]
gi|410597279|gb|EKQ51909.1| pseudouridylate synthase I [Methanobacterium sp. Maddingley MBC34]
Length = 274
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++A+ AY G + G Q+ P +T+EG+L AL SGA+S + N ++ + RTD+
Sbjct: 3 RVALKVAYLGTDFYGFQRQPNLRTVEGELISALKKSGAISNLGQSN-----YSIAGRTDR 57
Query: 121 GVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
GV A+G VVS F D ++ ++N LP IRI G RV F ++ +R Y Y+L
Sbjct: 58 GVHALGNVVS--FLTDKEPIINQVNDLLPMDIRILGSCRVPLGFKT-RYAHKRHYRYVL 113
>gi|253744083|gb|EET00338.1| Pseudouridylate synthase 1 [Giardia intestinalis ATCC 50581]
Length = 465
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 86/183 (46%), Gaps = 26/183 (14%)
Query: 47 GADSTTKRQLCKRR----KIAIFFAYCGVGYQGMQ------KNPGAKTIEGDLEEALFHS 96
GAD T+ L + R IAI Y G Y G Q +P T+EG++ A+ +
Sbjct: 22 GADLCTEPVLKQLRPKLVHIAIALGYVGTRYSGSQWQAPSVTHPHICTVEGEVYAAIEAA 81
Query: 97 GAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFG 156
G + RD + W R +RTDK VSA V S I+ LV+ L +LP I IFG
Sbjct: 82 GLLYGRDI---KSIGWTRCSRTDKSVSAAMAVFSFFAPINL-DLVQALQPHLPKDISIFG 137
Query: 157 YKRVTASFNAKKFCDQRRYVYLLPV-FALDSSSHR------DRESVMASLGS-----GNE 204
RV FNAK C R Y Y++P+ F L SS + D E+ + L S G E
Sbjct: 138 TVRVPPKFNAKMACTSRTYEYIMPLAFLLPSSQDKTASLCPDMETFFSYLNSPLSTGGTE 197
Query: 205 LVK 207
+K
Sbjct: 198 TIK 200
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 359 FHNFTTRTKAEDPSARRYI---ISFGA--DSVVNVEGIDFL-----KCEVVGQSFMLHQI 408
+HNFT S+R+ + +S A DS + E + K + GQ+F+++QI
Sbjct: 265 YHNFTEDNVQPSASSRKILSCSVSPSAVFDSQDSAEKTKLITELHTKITICGQAFLMYQI 324
Query: 409 RKMIGLAVAVVRNCAPQSLIETALQ-KDVNINVPTAPEVGLYL 450
R+M+G VA+VR P + + A Q + ++ + TAP G YL
Sbjct: 325 RRMMGALVAIVRGWIPVTFLYFAFQTRTKHLRMSTAP--GHYL 365
>gi|326430199|gb|EGD75769.1| hypothetical protein PTSG_07888 [Salpingoeca sp. ATCC 50818]
Length = 173
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 391 IDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
+++++ +V GQSFMLHQIRKMIG+AVAV R A + + + +++VP P +GLYL
Sbjct: 1 MEWIRIQVKGQSFMLHQIRKMIGMAVAVARGFAVMEDVYSTFNHE-SVDVPRIPGLGLYL 59
Query: 451 DECIFASYNKKWKDSH 466
D F YNKK++ SH
Sbjct: 60 DSVFFDFYNKKFQQSH 75
>gi|169806638|ref|XP_001828063.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
gi|161779191|gb|EDQ31215.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
Length = 347
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFM 404
+ N IL + G+H+FHNFTT+ + RYI A+S+ + GI++++ + G SF+
Sbjct: 174 KLNFILNLFHGNHDFHNFTTQN--VQGTTIRYIKHIYANSIKKINGIEYVEVFLHGDSFI 231
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIE---TALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
+HQIRKMI A+ + RN ++IE + N +P AP LYL F +NK+
Sbjct: 232 MHQIRKMIAFAIFMCRNYDDNTIIEQYYNIIFSKNNYYIPKAPSEYLYLYNIHFDDFNKR 291
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RKIA + YCG+ Y G+Q N T+E L + L +SE++ + ++ ++RT
Sbjct: 2 KRKIAFLWGYCGITYSGIQFNNEINTLEKKLIDILCKLQYISEKNAESAQKIKMKSASRT 61
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIR-----IFGYKRVTASFNAKKFCDQR 173
DKGVSA+ V C L E +N L + ++ RV +F + R
Sbjct: 62 DKGVSAIFNVT---ICKINQELTENINQILKNEFSKAGFILYNIARVPKTFIPYRSARSR 118
Query: 174 RYVYLLPVFALDSSSHRDRESVMAS 198
Y Y +P+ L+ + + + +M S
Sbjct: 119 EYKYFIPIGVLNKNIAKSQIDIMQS 143
>gi|154418432|ref|XP_001582234.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
gi|121916468|gb|EAY21248.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
Length = 345
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 62 IAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKG 121
I + + Y G Y G+Q+N T+E +L +AL +G +S++ N R W+ ++RTD G
Sbjct: 29 IILLYRYIGTQYHGLQQNIDTHTVEKELFQALISAGFLSDQANCNLNRIKWSEASRTDAG 88
Query: 122 VSAVGQVVSGR------FCI-DPPGLVERLNSNLP--TQIRIFGYKRVTASFNAKKFCDQ 172
V A QV+S + CI D P L+ N LP + I I + F A+KF +
Sbjct: 89 VHACAQVLSFKASGLKGICIADIPDLI---NKQLPRTSDIEIITCITLRRQFYAQKFAES 145
Query: 173 RRYVYLLPVFALDSSS 188
R Y +LLP A S+S
Sbjct: 146 RNYNFLLPTNAFSSNS 161
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 318 MAEERSVNGEEKLLKGSGFCYGEEEKKRFNR--ILKHYVGSHNFHNFTTRTKAEDPSARR 375
AE R+ N LL + F E + R IL ++G N+HNFT+ A +PS+ R
Sbjct: 142 FAESRNYNF---LLPTNAFSSNSIEHLNYLRTSILPLFIGWLNYHNFTSNKSASNPSSMR 198
Query: 376 YIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKD 435
I F VEG++F+ + G+SFML+QIRKMI ++ N ++ L ++
Sbjct: 199 KIDVFTFTDPFEVEGVEFVLFTIHGESFMLNQIRKMIATVISASHNYIGAEEVKRCLSEE 258
Query: 436 VNINVPTAPEVGLYLDECIFASYNK 460
++ P GL LD + NK
Sbjct: 259 -GWSIKMCPGDGLMLDHVDYIKCNK 282
>gi|66812718|ref|XP_640538.1| tRNA pseudouridine synthase [Dictyostelium discoideum AX4]
gi|60468568|gb|EAL66571.1| tRNA pseudouridine synthase [Dictyostelium discoideum AX4]
Length = 504
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 10/129 (7%)
Query: 62 IAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
+A+ F Y G GY G+ Q + +IE +E+ LF G + + G +R W+ S+RTD
Sbjct: 91 VAMVFGYDGTGYYGLGYQVDIKYPSIENLIEKVLFRCGHILPSNVGELKRLKWSHSSRTD 150
Query: 120 KGVSAVGQVVSGRFCIDP--------PGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCD 171
KGV ++ V+S +D ++ +N+ LP+ IR+F +V+ SF A+K
Sbjct: 151 KGVHSLATVISCFLVVDDNTFKNDINQTFIDTINNYLPSSIRLFSACKVSRSFQARKKGI 210
Query: 172 QRRYVYLLP 180
+R Y Y++P
Sbjct: 211 ERSYNYMVP 219
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 375 RYIISFGADS-VVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQ 433
R I SF ++ ++ ++G + K ++G+SF+L+QIR+M+G +++V+ + +E +L+
Sbjct: 311 RNIKSFYVENEIIEIKGKGWYKFVIIGESFILYQIRRMVGFFLSIVKGYSTVEALELSLK 370
Query: 434 KDVNINVPTAPEVGLYL 450
+I VPTAP LYL
Sbjct: 371 SPFSICVPTAPPFPLYL 387
>gi|398016885|ref|XP_003861630.1| pseudouridylate synthase-like protein [Leishmania donovani]
gi|322499857|emb|CBZ34930.1| pseudouridylate synthase-like protein [Leishmania donovani]
Length = 696
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 18/138 (13%)
Query: 62 IAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNP--RRYDWARSA 116
I + Y G G++G+Q P T+EG L +AL +G ++E RG P + +ARS
Sbjct: 27 IGLCVLYSGSGFRGLQIQAHAPTCHTVEGVLIQALKDAGIIAEVVRGRPAGEHHHFARSC 86
Query: 117 RTDKGVSAVGQVVSGRFCIDPP----------GLVERLNSNLPTQIRIFGYKRVTASFNA 166
RTD+GV A+ +VS P G+ E+LN LP+ +R+ +++ SF
Sbjct: 87 RTDRGVHAIRNMVS---LFVPKEVFEEMGQAEGICEKLNRQLPSTVRVANVMQLSGSFIP 143
Query: 167 KKFCDQRRYVYLLPVFAL 184
+ C++R Y Y+LP++AL
Sbjct: 144 RHCCNRRVYRYMLPLYAL 161
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 387 NVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEV 446
N + FL ++ G SF+L+ IRK+IG +AV R A +S++E A + + P AP
Sbjct: 359 NTTALPFLFFQIEGCSFLLNMIRKIIGSVLAVCRG-ARESILEDAFSPERRVTTPLAPGP 417
Query: 447 GLYLDECIFASYNK 460
LYL + + Y++
Sbjct: 418 YLYLAQSTYHGYDR 431
>gi|70952835|ref|XP_745558.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56525920|emb|CAH80907.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 507
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 349 ILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQI 408
I +Y G HNFH FT D + RYI F S V + +F+ ++GQSF++HQI
Sbjct: 360 IFSNYRGYHNFHCFTKNNI--DTTTFRYIKYFDV-STVKLYDHNFISIRILGQSFLMHQI 416
Query: 409 RKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
RKMI LAV RN P++ I +L I + P GL L F SYN+K
Sbjct: 417 RKMITLAVETFRNATPKNSIYYSLNTKSYIPILLFPPDGLMLVCPYFNSYNEK 469
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 140 LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+ LNSNLP I+ F +VT SF+A+KFC R Y YL P + L
Sbjct: 205 FINLLNSNLPNDIKCFDIYKVTKSFDARKFCSFRLYEYLFPTYVL 249
>gi|440794132|gb|ELR15303.1| tRNA pseudouridylate synthase [Acanthamoeba castellanii str. Neff]
Length = 180
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 23 DPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA 82
D K+ K+ + + E DL AA G D K+ +RK+ + Y G Y G+Q+NPG
Sbjct: 50 DAKKPKLEDSKDKEKETDL--AADGGDQ--KKVRYPKRKVGLLLGYKGTNYVGLQRNPGF 105
Query: 83 KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS 130
KTIE +LE A+ +G + E + G+ + +W R ARTDKGV A VVS
Sbjct: 106 KTIESELERAIVKAGGIDEWNAGSFTKVNWQRCARTDKGVHACLNVVS 153
>gi|19075416|ref|NP_587916.1| tRNA pseudouridine synthase (predicted) [Schizosaccharomyces pombe
972h-]
gi|74676082|sp|O74451.2|YCG6_SCHPO RecName: Full=Putative tRNA pseudouridine synthase C16C4.06c
gi|6855456|emb|CAA20745.2| tRNA pseudouridine synthase (predicted) [Schizosaccharomyces pombe]
Length = 413
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 4/130 (3%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
++R + +Y G G+ G+Q N KTI+ L +A GAV + + +P++ +AR
Sbjct: 35 RKRMVYCVVSYRGTGFAGLQYNANVKTIQDTLFQAFARVGAVVQVNADSPKKIRMCSAAR 94
Query: 118 TDKGVSAVGQVVSGRFCID---PPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
TDKGV A+ V+ G +D P +V +N LP IR++ R SF+ CD R
Sbjct: 95 TDKGVHAIVNVL-GLKVLDNQPLPHVVNLVNDILPPCIRVWKMARTFNSFSPHTVCDSRV 153
Query: 175 YVYLLPVFAL 184
Y Y LPV +L
Sbjct: 154 YEYWLPVSSL 163
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 349 ILKH----YVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGID--FLKCEVVGQS 402
LKH + G+H FH++TT D S+RR+++ D++ +++ ++ ++K GQS
Sbjct: 219 FLKHACTMFRGTHRFHSYTTEKGFSDASSRRFLLDVRVDNL-HIDKLNRQWVKLIFHGQS 277
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FM HQIRKM+G+ + + R ++ I +P AP L L++ IF ++NKK
Sbjct: 278 FMKHQIRKMVGILIHLTRTGWNAQVLLNTFNNSYRIRIPRAPAEFLLLNQPIFQAFNKK 336
>gi|408383137|ref|ZP_11180676.1| tRNA pseudouridine synthase A [Methanobacterium formicicum DSM
3637]
gi|407814245|gb|EKF84877.1| tRNA pseudouridine synthase A [Methanobacterium formicicum DSM
3637]
Length = 274
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 8/119 (6%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++A+ AY G + G Q+ P +T+EG+L +AL SGA++ N + ++ + RTD+
Sbjct: 3 RVALKVAYLGTAFYGFQRQPNLRTVEGELLKALEKSGAIT-----NLGQSSYSIAGRTDR 57
Query: 121 GVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
GV A+G VVS FC D ++ ++N LP IRI G V F ++ +R Y Y+L
Sbjct: 58 GVHALGNVVS--FCTDKEPIINQVNDVLPMDIRILGSCPVPQGFKT-RYAYKRHYRYVL 113
>gi|221508095|gb|EEE33682.1| pseudouridylate synthase, putative [Toxoplasma gondii VEG]
Length = 904
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 5/122 (4%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAED--PSARRYIISFGADSVVNVEGI--DFLKCEVV 399
++ + K + G+H F NFT R K +D P+A + I A S +++G+ D + E+
Sbjct: 707 EKLRAVFKVFEGTHAFQNFTKRGKHKDSSPAAFKRHIHRTAVSQAHLDGVSDDVVVIELE 766
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKD-VNINVPTAPEVGLYLDECIFASY 458
GQSF+ +QIRKM+G+AV V R A + + AL+ + N+ + TAP GL L ++ +Y
Sbjct: 767 GQSFLFNQIRKMVGIAVEVCRGTATVTSLTDALRPNRQNVFIHTAPAEGLLLLSPVYDTY 826
Query: 459 NK 460
N+
Sbjct: 827 NR 828
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 139 GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+ RLN+ LP IR F +RVT +F+A+ C +RRY +LLP + L
Sbjct: 447 AFLARLNAALPPDIRCFAVRRVTKNFDARVSCSRRRYAFLLPAWLL 492
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 70 GVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVV 129
G+ + ++ P +T+EG LEEAL SG ++ G ++ W+R+ARTD+GV A VV
Sbjct: 270 GLSLESLEAPP--RTVEGVLEEALLASGGIAPYCLGCLQKLQWSRAARTDRGVHAACNVV 327
Query: 130 SGRFCIDP 137
S + + P
Sbjct: 328 SLKLSLGP 335
>gi|300175270|emb|CBK20581.2| unnamed protein product [Blastocystis hominis]
Length = 310
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 66/135 (48%), Gaps = 10/135 (7%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
I+F Y Y GMQ N +++E L + LF + + ++DW R +RTDKGVS
Sbjct: 4 IWFLYRN-SYSGMQVNDTRQSVEDKLVDCLFMLDKIEPWNVIKSSKFDWERCSRTDKGVS 62
Query: 124 AVGQVVSGRFC---------IDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
A VVSG+ + VE+LN LP IR+F Y RV+ SFN R
Sbjct: 63 ARSIVVSGKLMDYDDEFDSSMQNQLAVEQLNQLLPEDIRVFSYTRVSKSFNPHLNTHTRT 122
Query: 175 YVYLLPVFALDSSSH 189
Y Y LP+ SS +
Sbjct: 123 YSYYLPLDQYQSSHY 137
>gi|387196937|gb|AFJ68784.1| trna pseudouridine synthase, partial [Nannochloropsis gaditana
CCMP526]
Length = 283
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
+ YCG +QGMQ NPGA TIE +LE+A++ +G + E + G+ ++ W+RS RTDKGV
Sbjct: 1 MIIGYCGTDFQGMQMNPGAITIEAELEKAMYEAGCIKEANFGSLQKIGWSRSGRTDKGVH 60
Query: 124 AVGQVVS 130
A QVV
Sbjct: 61 AAAQVVG 67
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 144 LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
+N LP IRI G R T FNAK C +RRY Y
Sbjct: 248 INRQLPPSIRIHGILRATRGFNAKNDCTRRRYCYW 282
>gi|328873726|gb|EGG22093.1| hypothetical protein DFA_01983 [Dictyostelium fasciculatum]
Length = 604
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 14/145 (9%)
Query: 47 GADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAK--TIEGDLEEALFHSGAVSERDR 104
+ S TKRQ + +A+ F+Y G G+ G++ K +E LE+ALF SG + +
Sbjct: 144 NSSSETKRQ---KTPVAMLFSYVGTGHFGLEYTYEEKYPALENYLEKALFLSGMILPTNF 200
Query: 105 GNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGL---------VERLNSNLPTQIRIF 155
G+ R W+RS+RTDKGV ++ ++ I+ + ++++NS LP + I
Sbjct: 201 GDVTRIKWSRSSRTDKGVHSLSTIIGASILINREKIQTKEGVRAYIDQINSYLPPTLHIV 260
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLP 180
+ SF ++ R Y Y+LP
Sbjct: 261 SMATTSRSFMPRRQTSSRTYHYVLP 285
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 375 RYIISFGADSVVNVEGID-----FLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIE 429
R I SF VE D ++K + G+SF+ +QIRKM+G +AV ++E
Sbjct: 417 RKIHSFTIGETFLVESNDQQQEEWVKFMIEGESFIQYQIRKMVGFVLAVCHGLVDVKILE 476
Query: 430 TALQKDVNINVPTAPEVGLYLDEC 453
AL+ +IN P AP LYL +C
Sbjct: 477 IALKGPFSINSPIAPPDTLYLYDC 500
>gi|146089460|ref|XP_001470389.1| pseudouridylate synthase-like protein [Leishmania infantum JPCM5]
gi|134070422|emb|CAM68761.1| pseudouridylate synthase-like protein [Leishmania infantum JPCM5]
Length = 696
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 18/138 (13%)
Query: 62 IAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNP--RRYDWARSA 116
I + Y G G++G+Q P T+EG L +AL +G V++ RG P + +ARS
Sbjct: 27 IGLCVLYSGSGFRGLQIQAHAPTCHTVEGVLIQALKDAGIVADVVRGRPAGEHHHFARSC 86
Query: 117 RTDKGVSAVGQVVSGRFCIDPP----------GLVERLNSNLPTQIRIFGYKRVTASFNA 166
RTD+GV A+ +VS P G+ E+LN LP+ +R+ +++ SF
Sbjct: 87 RTDRGVHAIRNMVS---LFVPKEVFEEMGQAEGICEKLNRQLPSTVRVANVMQLSGSFIP 143
Query: 167 KKFCDQRRYVYLLPVFAL 184
+ C++R Y Y+LP++AL
Sbjct: 144 RHCCNRRVYRYMLPLYAL 161
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 387 NVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEV 446
N + FL ++ G SF+L+ IRK+IG +AV R A +S++E A + + P AP
Sbjct: 359 NTTALPFLFFQIEGCSFLLNMIRKIIGSVLAVCRG-ARESILEDAFSPERRVTTPLAPGP 417
Query: 447 GLYLDECIFASYNK 460
LYL + + Y++
Sbjct: 418 YLYLAQSTYHGYDR 431
>gi|237833615|ref|XP_002366105.1| hypothetical protein TGME49_024200 [Toxoplasma gondii ME49]
gi|211963769|gb|EEA98964.1| hypothetical protein TGME49_024200 [Toxoplasma gondii ME49]
Length = 904
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 5/122 (4%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAED--PSARRYIISFGADSVVNVEGI--DFLKCEVV 399
++ + K + G+H F NFT R K +D P+A + I A S +++G+ D + E+
Sbjct: 707 EKLRAVFKVFEGTHAFQNFTKRGKHKDSSPAAFKRHIHRTAVSQAHLDGVSDDVVVIELE 766
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKD-VNINVPTAPEVGLYLDECIFASY 458
GQSF+ +QIRKM+G+AV V R A + + AL+ + N+ + TAP GL L ++ +Y
Sbjct: 767 GQSFLFNQIRKMVGIAVEVCRGTATVTSLTDALRPNRQNVFIHTAPAEGLLLLSPVYDTY 826
Query: 459 NK 460
N+
Sbjct: 827 NR 828
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 139 GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+ RLN+ LP IR F +RVT +F+A+ C +RRY +LLP + L
Sbjct: 447 AFLARLNAALPPDIRCFAVRRVTKNFDARVSCSRRRYAFLLPAWLL 492
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
A G+ + ++ P +T+EG LEEAL SG ++ G ++ W+R+ARTD+GV A
Sbjct: 267 ASLGLSLESLEAPP--RTVEGVLEEALLASGGIAPCCLGCLQKLQWSRAARTDRGVHAAC 324
Query: 127 QVVSGRFCIDP 137
VVS + + P
Sbjct: 325 NVVSLKLSLGP 335
>gi|221486308|gb|EEE24569.1| pseudouridylate synthase, putative [Toxoplasma gondii GT1]
Length = 901
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 5/122 (4%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAED--PSARRYIISFGADSVVNVEGI--DFLKCEVV 399
++ + K + G+H F NFT R K +D P+A + I A S +++G+ D + E+
Sbjct: 704 EKLRAVFKVFEGTHAFQNFTKRGKHKDSSPAAFKRHIHRTAVSQAHLDGVSDDVVVIELE 763
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKD-VNINVPTAPEVGLYLDECIFASY 458
GQSF+ +QIRKM+G+AV V R A + + AL+ + N+ + TAP GL L ++ +Y
Sbjct: 764 GQSFLFNQIRKMVGIAVEVCRGTATVTSLTDALRPNRQNVFIHTAPAEGLLLLSPVYDTY 823
Query: 459 NK 460
N+
Sbjct: 824 NR 825
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 139 GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
+ RLN+ LP IR F +RVT +F+A+ C +RRY +LLP + L
Sbjct: 444 AFLARLNAALPPDIRCFAVRRVTKNFDARVSCSRRRYAFLLPAWLL 489
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
A G+ + ++ P +T+EG LEEAL SG ++ G ++ W+R+ARTD+GV A
Sbjct: 267 ASLGLSLESLEAPP--RTVEGVLEEALLASGGIAPCCLGCLQKLQWSRAARTDRGVHAAC 324
Query: 127 QVVSGRFCIDP 137
VVS + + P
Sbjct: 325 NVVSLKLSLGP 335
>gi|156082175|ref|XP_001608576.1| pseudouridylate synthase 1 [Plasmodium vivax Sal-1]
gi|148801515|gb|EDL42914.1| pseudouridylate synthase 1, putative [Plasmodium vivax]
Length = 587
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVV 399
EEE F I++ Y G HNFH FT ++KAE + R I + S VN+ +F+ +++
Sbjct: 431 EEELNAFFEIVQSYAGYHNFHCFT-KSKAEQTTFR--FIKYLEVSTVNLHDHNFVSVQIL 487
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
GQSF++HQIRKM+ L+V R + I L + + P GL L F +YN
Sbjct: 488 GQSFLMHQIRKMLTLSVETFRKATCVNSIYYCLNAGEYVPISLFPAEGLMLICPFFNAYN 547
Query: 460 KK 461
+K
Sbjct: 548 EK 549
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 29/48 (60%)
Query: 144 LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRD 191
LN +LP IR F RVT SF+A+KFC R Y YL PV L + RD
Sbjct: 191 LNEHLPEDIRCFDMHRVTKSFDARKFCSFRLYEYLFPVCVLSEVAVRD 238
>gi|119618937|gb|EAW98531.1| pseudouridylate synthase 1, isoform CRA_b [Homo sapiens]
Length = 162
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 389 EGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGL 448
EG++F V GQSFM+HQIRKM+GL VA+V+ AP+S++E + + ++VP AP +GL
Sbjct: 10 EGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGL 68
Query: 449 YLDECIFASYNKK 461
L+ F YN++
Sbjct: 69 VLERVHFEKYNQR 81
>gi|401423720|ref|XP_003876346.1| pseudouridylate synthase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492588|emb|CBZ27865.1| pseudouridylate synthase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 696
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 18/138 (13%)
Query: 62 IAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNP--RRYDWARSA 116
I + Y G G++G+Q P T+EG L +AL +G +++ RG P + +ARS
Sbjct: 27 IGLCVLYSGSGFRGLQIQAHAPTCHTVEGVLIQALKDAGIIADVVRGRPAGEHHHFARSC 86
Query: 117 RTDKGVSAVGQVVSGRFCIDPP----------GLVERLNSNLPTQIRIFGYKRVTASFNA 166
RTD+GV A+ +VS P G+ E+LN LP +R+ +++ SF
Sbjct: 87 RTDRGVHAIRNMVS---LFVPKEIFEEVGQTEGICEKLNRQLPATVRVANVMQLSGSFIP 143
Query: 167 KKFCDQRRYVYLLPVFAL 184
+ C++R Y Y+LP++AL
Sbjct: 144 RHCCNRRVYRYMLPLYAL 161
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 387 NVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEV 446
N + FL ++ G SF+L+ IRK+IG +AV R A + ++E A + + P AP
Sbjct: 359 NTTALPFLFFQIEGCSFLLNMIRKIIGSVLAVCRG-AREPILEEAFSPERRVTTPLAPGP 417
Query: 447 GLYLDECIFASYNK 460
LYL + + Y++
Sbjct: 418 YLYLAQSTYHGYDR 431
>gi|387207441|gb|AFJ69057.1| trna pseudouridine synthase family protein, partial
[Nannochloropsis gaditana CCMP526]
Length = 138
Score = 75.9 bits (185), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLY 449
G++++ + GQ+F+LHQIRKM+ +A+ V R AP +LIE A Q DV + +P AP GLY
Sbjct: 7 GLEWVCVTLTGQAFLLHQIRKMVAVAIMVSRGSAPATLIEDAYQ-DVMLTLPMAPSEGLY 65
Query: 450 LDECIFASYNKK 461
LD+ FA YN++
Sbjct: 66 LDKASFALYNQR 77
>gi|157870999|ref|XP_001684049.1| pseudouridylate synthase-like protein [Leishmania major strain
Friedlin]
gi|68127117|emb|CAJ04679.1| pseudouridylate synthase-like protein [Leishmania major strain
Friedlin]
Length = 696
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 18/138 (13%)
Query: 62 IAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNP--RRYDWARSA 116
I + Y G G++G+Q P T+EG L +AL +G +++ RG P + +ARS
Sbjct: 27 IGLCVLYSGSGFRGLQIQVHAPTCHTVEGVLIQALKDAGIIADVVRGRPAGEHHHFARSC 86
Query: 117 RTDKGVSAVGQVVSGRFCIDPP----------GLVERLNSNLPTQIRIFGYKRVTASFNA 166
RTD+GV A+ +VS P G+ E+LN LP +R+ +++ SF
Sbjct: 87 RTDRGVHAIRNMVS---LFVPKEVFEKMGQAEGICEKLNRQLPATVRVANVMQLSGSFIP 143
Query: 167 KKFCDQRRYVYLLPVFAL 184
+ C++R Y Y+LP++AL
Sbjct: 144 RHCCNRRVYRYMLPLYAL 161
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 387 NVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEV 446
N + FL ++ G SF+L+ IRK+IG +AV R A +S++E A + + P AP
Sbjct: 359 NTTALPFLFFQIEGCSFLLNMIRKIIGSVLAVCRG-ARESILEDAFSPECRVTTPLAPGP 417
Query: 447 GLYLDECIFASYNK 460
LYL + + Y++
Sbjct: 418 YLYLAQSTYHGYDR 431
>gi|159120024|ref|XP_001710229.1| Pseudouridylate synthase 1 [Giardia lamblia ATCC 50803]
gi|157438347|gb|EDO82555.1| Pseudouridylate synthase 1 [Giardia lamblia ATCC 50803]
Length = 467
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 58 KRRKIAIFFAYCGVGYQGMQ------KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYD 111
K IA+ Y G Y G Q +P +T+EG++ A+ +G + RD +
Sbjct: 37 KLVHIAVALGYVGTRYSGSQWQAPSATHPDIRTVEGEIYAAIEAAGILYGRDI---KSIG 93
Query: 112 WARSARTDKGVSAVGQVVSGRFCIDPPG---LVERLNSNLPTQIRIFGYKRVTASFNAKK 168
W R +RTD+ VSA V F PG LV+ L +LP I IFG RV F+AK
Sbjct: 94 WTRCSRTDRSVSAAMAV----FSFFGPGHLDLVQALQPHLPKDISIFGTVRVPPKFSAKM 149
Query: 169 FCDQRRYVYLLP-VFALDSS 187
C R Y Y++P VF L SS
Sbjct: 150 ACTSRTYEYMMPLVFLLPSS 169
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 359 FHNFTTRTKAEDPSARRYI---ISFGADSVVNVEGID-------FLKCEVVGQSFMLHQI 408
+HNFT S+R+ + +S A + I + K + GQ+F+++QI
Sbjct: 267 YHNFTEDNVQPSASSRKILSCSVSLSAAFDSQTDAIKDKPAAELYTKVTICGQAFLMYQI 326
Query: 409 RKMIGLAVAVVRNCAPQSLIETALQ-KDVNINVPTAPEVGLYLDE 452
R+M+G VAV+R P S + A Q + ++ + TAP L L +
Sbjct: 327 RRMMGALVAVLRGWIPASFLYFAFQTRTKHLRISTAPGSYLLLKQ 371
>gi|153005130|ref|YP_001379455.1| tRNA-pseudouridine synthase I [Anaeromyxobacter sp. Fw109-5]
gi|152028703|gb|ABS26471.1| tRNA-pseudouridine synthase I [Anaeromyxobacter sp. Fw109-5]
Length = 265
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+RR A+ AY G ++G Q+ PG T++ LE AL +G R A +A
Sbjct: 1 MERRFYALRVAYEGGRFRGFQRQPGLPTVQDALEGALLAAGV----------RATLAVAA 50
Query: 117 RTDKGVSAVGQVVS--GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
RTD GV A+ QVVS R +DP L LN+ LP + + RV SF+A+ RR
Sbjct: 51 RTDAGVHALDQVVSFSARAALDPAALRGALNAALPEGVAVLEVLRVAPSFHARNTARARR 110
Query: 175 YVYLL 179
YVYL+
Sbjct: 111 YVYLV 115
>gi|402465320|gb|EJW01196.1| tRNA pseudouridine synthase A [Edhazardia aedis USNM 41457]
Length = 326
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVV 399
EE + Y+G+HNF NFT++ + P R+I + A+ G +F+K +
Sbjct: 142 EETHSLLRDLFVKYIGTHNFINFTSKNNTKGPI--RFIKNVEANEKFVYNGFEFIKIRIT 199
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSL--IETALQKDV--NINVPTAPEVGLYLDECIF 455
G SF+ +QIRKMIG +++V +++ + A + D +N+P P LYLD +F
Sbjct: 200 GNSFLFNQIRKMIGYVISLVIYKKDEAISDFKMAFENDYLGKMNIPRVPGCFLYLDSPVF 259
Query: 456 ASYNKK 461
+NKK
Sbjct: 260 DFFNKK 265
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+R+IA+ Y G Y G Q N T+E L + A+ E + +P++ R +RT
Sbjct: 2 KRRIAVIIGYNGKDYHGSQLNKDFPTVEYQLVKGFLEISAIKEINSLDPKKIGLQRGSRT 61
Query: 119 DKGVSAVGQVVSGRFCIDPPGL-VERLNSNLPTQ-IRIFGYKRVTASFNAKKFCDQRRYV 176
DKGV AV V++ + D +++L L T+ I ++ RV+ SF K CD R Y
Sbjct: 62 DKGVHAVMAVITLKIEKDITSCDLKKLKFFLETKNIYLYKIVRVSKSFMPKHQCDSRIYE 121
Query: 177 YLLPVFALDS 186
YLLP F S
Sbjct: 122 YLLPSFIFSS 131
>gi|393227193|gb|EJD34883.1| pseudouridine synthase, partial [Auricularia delicata TFB-10046
SS5]
Length = 411
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 66/139 (47%), Gaps = 7/139 (5%)
Query: 57 CKRRKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWA 113
C RRKIA+ F Y G Y G+ Q P A T+E L+EAL+ + P DW
Sbjct: 46 CYRRKIALKFCYDGWEYNGLASQGEPTALPTVEAVLQEALYKKRLIDPN--AGPAGCDWD 103
Query: 114 RSARTDKGVSAVGQVVSG--RFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCD 171
R RTDKGVSA QVVS R V LN LP +RI + V +F+A+ C
Sbjct: 104 RCGRTDKGVSAASQVVSLWIRTAKKEFPYVSMLNRVLPPSLRILAWAPVADTFSARFNCR 163
Query: 172 QRRYVYLLPVFALDSSSHR 190
R Y Y +D + R
Sbjct: 164 YRHYKYFFSPDGIDLARMR 182
>gi|389582093|dbj|GAB64493.1| pseudouridylate synthase 1 [Plasmodium cynomolgi strain B]
Length = 347
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFML 405
F I++ Y G HNFH FT + K E + R I + S VN+ +F+ +++GQSF++
Sbjct: 162 FFEIIQSYAGYHNFHCFT-KNKVEQTTFR--FIKYLDVSTVNLYNYNFVSVKILGQSFLM 218
Query: 406 HQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
HQIRKM+ LAV R S I L+ + + P GL L F +YN+K
Sbjct: 219 HQIRKMLTLAVETFRKATSVSSIYYCLRSGEYVPISLFPAEGLMLICPYFNAYNEK 274
>gi|387594163|gb|EIJ89187.1| hypothetical protein NEQG_01006 [Nematocida parisii ERTm3]
gi|387595640|gb|EIJ93263.1| hypothetical protein NEPG_01605 [Nematocida parisii ERTm1]
Length = 325
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
K F L+ G+HNFHNFT T+ + P R+I + EG+ + K + GQSF
Sbjct: 148 KIFTETLQKMEGTHNFHNFTILTQEKGPV--RFIKKITVEEYT-AEGLKWNKVVLHGQSF 204
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNI---NVPTAPEVGLYLDECIFASYNK 460
M+HQIRKMIG +V + A + AL+ + N+P P L L F++YN+
Sbjct: 205 MIHQIRKMIGFSVLAAQRLAGPLDVPKALELVFSTEKRNIPKVPGELLLLSHSYFSNYNE 264
Query: 461 KWKDS 465
K+ D+
Sbjct: 265 KFGDT 269
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 11/130 (8%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++++A+ Y G+GY+G Q N KTIE + + + +SER+ + + RS+RT
Sbjct: 3 KKRVALIIGYNGIGYKGSQINKEEKTIEKTVCDEIHALHYISERNAEDYSKVALQRSSRT 62
Query: 119 DKGVSAVGQVVS-------GRFCIDPPGLVERLNSNLPTQ-IRIFGYKRVTASFNAKKFC 170
DKGV A V+S GR C D L +L +LP I + T +F+AK C
Sbjct: 63 DKGVHAAMLVLSLRIEISEGRSCKD---LENKLKESLPAHGIVLHRLVETTKNFDAKHRC 119
Query: 171 DQRRYVYLLP 180
+ R Y Y +P
Sbjct: 120 ESRVYEYFVP 129
>gi|378755904|gb|EHY65929.1| hypothetical protein NERG_00625 [Nematocida sp. 1 ERTm2]
Length = 316
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 342 EKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQ 401
+K F LK G+HNFHNFT + + P +R+I + ++ +GI + + + GQ
Sbjct: 145 KKDIFMESLKKMQGTHNFHNFTATNQEKGP--KRFIKKIEVEEYLS-DGIKWCRVLLHGQ 201
Query: 402 SFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVN---INVPTAPEVGLYLDECIFASY 458
SFM+HQIRKMIG A + ++ AL K ++ +N+P P L L F +Y
Sbjct: 202 SFMIHQIRKMIGFATLAAQRIQTVGDVQEALDKVMSPEKVNIPKVPGELLLLSHSYFTNY 261
Query: 459 NKKW 462
NK +
Sbjct: 262 NKNF 265
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++++A+ Y G+GY+G Q N KTIE + + ++ +S+R+ + + RS+RT
Sbjct: 3 KKRVALIIGYNGIGYKGSQINKDEKTIEKTVCDEIYGLKYISDRNAEDYSKVGLQRSSRT 62
Query: 119 DKGVSAVGQVVSGRFCIDPPGL--VER-LNSNLPTQ-IRIFGYKRVTASFNAKKFCDQRR 174
DKGV A V+S R D + +ER L LP I + T +F+AK C+ R
Sbjct: 63 DKGVHAAMLVLSLRIETDNRSISDLERELKEILPRHNITLHRIVETTKNFDAKNRCESRV 122
Query: 175 YVYLLPVFALDSSS 188
Y Y +P+ A S
Sbjct: 123 YEYFVPLSAYTQES 136
>gi|325959678|ref|YP_004291144.1| tRNA pseudouridine synthase A [Methanobacterium sp. AL-21]
gi|325331110|gb|ADZ10172.1| tRNA pseudouridine synthase A [Methanobacterium sp. AL-21]
Length = 271
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 12/121 (9%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
KIA AY G Y G Q+ P TIEG+L A SG +S+ +P + D++ + RTD+
Sbjct: 3 KIAFKVAYIGTDYHGFQRQPNLPTIEGELLRAFKKSG-ISD----SPEKSDYSIAGRTDR 57
Query: 121 GVSAVGQVVSGRFCI--DPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GVSA+G VV C+ D + R+N LP+ IRI G V+ F ++ R Y Y+
Sbjct: 58 GVSALGNVV----CLKTDKDVTINRINYYLPSNIRIIGSTMVSNGFKP-RYAKLRHYRYI 112
Query: 179 L 179
L
Sbjct: 113 L 113
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
K G HN+ NF+ R++ P Y SV VE D + +VVG+SF+ + +RK
Sbjct: 132 KQMEGKHNYINFSKRSE-RAPERMVY-------SVDLVETPDNIVFDVVGESFLWNMVRK 183
Query: 411 MIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIF 455
M+ + V R +ET DV + GL L + ++
Sbjct: 184 MVKVLVMFGREELTLENLETLFNPDVPAAIKPVASDGLILMDVVY 228
>gi|19115377|ref|NP_594465.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe
972h-]
gi|74698445|sp|Q9UTB3.1|YL85_SCHPO RecName: Full=Putative tRNA pseudouridine synthase C25B8.05
gi|6469292|emb|CAB61771.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe]
Length = 450
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 55 QLCKRRKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYD 111
QL K +A FAYCG Y G+ Q P T+EG + EAL + +++ P
Sbjct: 87 QLEKTVFVAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLITD-----PSSCS 141
Query: 112 WARSARTDKGVSAVGQVVSGRFCID---PPGLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
++R RTDKGVSA+GQV+S P + LN LP IRI GY F+A+
Sbjct: 142 FSRCGRTDKGVSAMGQVISLNVRHSERRPIIYCDVLNRLLPADIRITGYAFPPEGFDARF 201
Query: 169 FCDQRRYVYLL 179
C QR Y YL
Sbjct: 202 SCKQRHYKYLF 212
>gi|82595787|ref|XP_725993.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481212|gb|EAA17558.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1510
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 349 ILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQI 408
I +Y G HNFH FT D + RYI F S V + +F+ ++GQSF++HQI
Sbjct: 1363 IFSNYRGYHNFHCFTKNN--IDTTTYRYIKYFDI-STVKLYDHNFISIRILGQSFLMHQI 1419
Query: 409 RKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
RKMI L V + RN ++ I +L I + P GL L F SYN+K
Sbjct: 1420 RKMITLTVEIFRNATSKNSIYYSLNTKNYIPILLFPPDGLMLICPYFNSYNEK 1472
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 140 LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
++ LNSNLP+ I+ F +VT SF+A+KFC R Y YL P + L
Sbjct: 1218 FIKLLNSNLPSDIKCFDIYKVTKSFDARKFCSFRLYEYLFPTYVL 1262
>gi|56758144|gb|AAW27212.1| unknown [Schistosoma japonicum]
Length = 223
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 354 VGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIG 413
+ + +++FT+ D S R+I S + ++ ++GQSFMLHQ+RKMIG
Sbjct: 4 ISTQIYYHFTSGRLPTDKSCYRHIKSVECIPTFLLGEHEYTVIRIIGQSFMLHQVRKMIG 63
Query: 414 LAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKD 464
L + ++R A + + + K+ +++P AP +GL L++ F+ YNKK+++
Sbjct: 64 LVLGILRGYATEDVFDIVFCKE-RVDIPKAPGLGLMLNQVDFSYYNKKYQN 113
>gi|153792349|ref|NP_001093370.1| pseudouridylate synthase 3 [Xenopus laevis]
gi|148745611|gb|AAI42593.1| LOC100101318 protein [Xenopus laevis]
Length = 507
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 62/133 (46%), Gaps = 11/133 (8%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAK-TIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+R +A+ AY G GYQG K T+E + AL + V R N + R R
Sbjct: 58 KRHVALRLAYLGWGYQGFASQENTKNTVEETVFNALLKTRLVESRQTSN-----YHRCGR 112
Query: 118 TDKGVSAVGQVVSGRFCIDPPG-----LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
TD+GVSA+ QV+S G V LN LP IR+ + V SF+A+ C
Sbjct: 113 TDRGVSALAQVISLDLRCSAEGKPEIRYVHILNRVLPPDIRVLSWAPVPPSFSARFSCGS 172
Query: 173 RRYVYLLPVFALD 185
R Y YL P LD
Sbjct: 173 RTYRYLFPCAQLD 185
>gi|429962506|gb|ELA42050.1| tRNA pseudouridine synthase A [Vittaforma corneae ATCC 50505]
Length = 365
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFML 405
F +++ YVG+ N+HNFT K + SA+R+I +++++ ++ GQSF+L
Sbjct: 189 FTKMMNCYVGTKNYHNFTL--KRTEGSAQRFIKQITVSEPFLDSDVEYIEIKIHGQSFLL 246
Query: 406 HQIRKMIGLAVAVVRNCA--PQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
HQIRKMI AV R Q+ E AL K+ ++++P P L+L+ F +N K
Sbjct: 247 HQIRKMISFAVLNCRYARNNYQANFEKALSKE-DVHIPKCPSQYLFLNHIFFEDFNTK 303
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+ + Y G GY G+Q N KTIE ++ + L + ++E + +P++ D +RT
Sbjct: 2 KRKVGLIIGYNGEGYHGLQYNNDLKTIEKEIIDILLRNECITEINSKDPQKIDLKSCSRT 61
Query: 119 DKGVSAVGQVVSGRFCIDPP-GLVERLNSN-LPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
DKGV A VVS + +P L E L L + ++ ++ F K R Y
Sbjct: 62 DKGVHASFNVVSVKIIQEPTLELFEILKREFLDKGMILYKLIKLPKRFLGHKCARSRIYK 121
Query: 177 YLLPVFALDSSS 188
Y+LP + L S+
Sbjct: 122 YVLPTYVLQDSN 133
>gi|322786132|gb|EFZ12740.1| hypothetical protein SINV_14818 [Solenopsis invicta]
Length = 444
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 77/180 (42%), Gaps = 19/180 (10%)
Query: 19 RQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQ- 77
R E ++LK+S T +D + + T C +R I + F Y G Y G
Sbjct: 51 RLEAHTEQLKVSITKNTDIKSKKEETSWKVRKTFDFSRCHKRHILLKFYYLGWDYHGFTV 110
Query: 78 KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS------- 130
+ TIE L AL S + R+ N + R RTDKGVS+ QV+S
Sbjct: 111 QEDNCNTIEHHLFAALLKSCCIESRESAN-----YHRCGRTDKGVSSFSQVISLDIRSKL 165
Query: 131 -----GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
G + P + LN LPT IR + V ++F+A+ C RRY Y P LD
Sbjct: 166 APEDQGNLSNELP-YCKMLNRLLPTNIRCVAWCPVASNFSARFDCKYRRYKYFFPRGNLD 224
>gi|221052120|ref|XP_002257636.1| pseudouridylate synthase 1 [Plasmodium knowlesi strain H]
gi|193807466|emb|CAQ37972.1| pseudouridylate synthase 1, putative [Plasmodium knowlesi strain H]
Length = 524
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVV 399
EEE F I+++Y G HNFH FT + K + + R I + S VN+ +F+ +++
Sbjct: 368 EEELNAFFEIVQNYAGYHNFHCFT-KNKVDQTTFR--FIKYLDVSTVNLFNYNFVSVKIL 424
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
GQSF++HQIRKM+ L+V R + I L+ + + P GL L F +YN
Sbjct: 425 GQSFLMHQIRKMLTLSVETFRKATSVNSIYYCLKSGEYVPISLFPAEGLMLICPYFNAYN 484
Query: 460 KK 461
+K
Sbjct: 485 EK 486
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 31/52 (59%)
Query: 140 LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRD 191
V LN +LP IR FG RVT SF+A+KFC R Y YL PV+ L RD
Sbjct: 197 FVHLLNEHLPEDIRCFGMHRVTKSFDARKFCSFRLYEYLFPVYVLSEVVVRD 248
>gi|15678860|ref|NP_275977.1| tRNA pseudouridine synthase A [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3915162|sp|O26928.1|TRUA_METTH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|2621931|gb|AAB85338.1| pseudouridylate synthase I [Methanothermobacter thermautotrophicus
str. Delta H]
Length = 275
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 8/120 (6%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
RKIA+ AY G Y G Q+ P T+EG L EAL +G + +P+R + + RTD
Sbjct: 2 RKIALKVAYIGTNYHGFQRQPDVPTVEGKLLEALEGAGIIE-----DPKRARFQIAGRTD 56
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
+GV A+G VS F + V ++N LP IR+ + V F ++ +R Y Y+L
Sbjct: 57 RGVHALGNFVS--FFTEEDIHVNQINDLLPRDIRVLAWASVMYPFKV-RYPLERHYRYIL 113
>gi|396081233|gb|AFN82851.1| pseudouridine synthase 2 [Encephalitozoon romaleae SJ-2008]
Length = 345
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 9/120 (7%)
Query: 340 EEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVV 399
E++ K F IL+ Y+G+ +FHNFT + ++RYI S EG+++++ +
Sbjct: 172 EDDIKAFGSILQKYIGTKDFHNFTKLN--NEKGSKRYIKSITVTDPYVSEGVEYVRISIT 229
Query: 400 GQSFMLHQIRKMIGLAVAVVR----NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIF 455
GQSF+LHQIRKM+ AV + + + P+ + + Q N++VP P L LD+ +F
Sbjct: 230 GQSFLLHQIRKMVLFAVLLCKYSRSSVDPKFNMVFSKQ---NVHVPKGPSGYLLLDKPVF 286
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
+ Y G Y G+Q N TIE + E L A+SER+ +P++ S+RTDKGV
Sbjct: 6 GLLVGYDGSRYHGLQFNKELDTIEKRVVECLLQVEAISERNADDPKKIHIKSSSRTDKGV 65
Query: 123 SAVGQVVSGR--FCIDPPGLVERLNSNLPTQ-IRIFGYKRVTASFNAKKFCDQRRYVYLL 179
A ++S + CI LV RL + L + I ++ R+T S + R Y Y++
Sbjct: 66 HAALNLISVKIEICITSE-LVSRLRTLLAKEGIHLYNIVRLTKSTVPSRQAISRTYEYIV 124
Query: 180 PVFAL 184
P F L
Sbjct: 125 PTFFL 129
>gi|401826036|ref|XP_003887112.1| pseudouridine synthase [Encephalitozoon hellem ATCC 50504]
gi|392998270|gb|AFM98131.1| pseudouridine synthase [Encephalitozoon hellem ATCC 50504]
Length = 345
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Query: 334 SGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDF 393
+G+ ++ K F IL+ Y+G+ +FHNFT + +RYI S E +++
Sbjct: 166 TGYRSSPDDIKAFESILQKYIGTKDFHNFTKLN--NEKGTKRYIKSITITDPYVSEDVEY 223
Query: 394 LKCEVVGQSFMLHQIRKMIGLAVAVV---RNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
++ + GQSF+LHQIRKM+ AV + RN Q A K N++VP P L L
Sbjct: 224 VRISITGQSFLLHQIRKMVLFAVLLCKYSRNSVDQKF-SIAFNKQ-NVHVPKGPSEYLLL 281
Query: 451 DECIF 455
D+ +F
Sbjct: 282 DKPVF 286
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
+ Y G GY G+Q N TIE + + L GA+SER+ +P++ S+RTDKGV
Sbjct: 6 GLLVGYDGSGYHGLQFNKELDTIEKKVVDCLLSVGAISERNAEDPKKIHIKSSSRTDKGV 65
Query: 123 SAVGQVVSGRF--CIDPPGLVERLNSNLPTQ-IRIFGYKRVTASFNAKKFCDQRRYVYLL 179
A ++S + CI P LV RL + L + I ++ ++T S K R Y Y++
Sbjct: 66 HAAFNLISVKIEVCITPE-LVSRLRTLLSQEGIHLYDIVKLTKSTVPSKQAISRTYEYVV 124
Query: 180 PVFAL 184
P F L
Sbjct: 125 PTFFL 129
>gi|45360593|ref|NP_988969.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis]
gi|38174435|gb|AAH61416.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis]
Length = 505
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAK-TIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
++ +A+ AY G GYQG K T+E + AL + V R N + R R
Sbjct: 61 KQHVALRLAYLGWGYQGFASQENTKNTVEETVFNALIKTRLVESRQTSN-----YHRCGR 115
Query: 118 TDKGVSAVGQVVSGRFCIDPPG-----LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
TD+GVSA+GQV+S G V LN LP IR+ + V SF+A+ C
Sbjct: 116 TDRGVSALGQVISLDLRCSGEGKPEIRYVHILNRVLPPDIRVLSWAAVPPSFSARFSCRS 175
Query: 173 RRYVYLLPVFALD 185
R Y YL P LD
Sbjct: 176 RTYRYLFPCAQLD 188
>gi|402594750|gb|EJW88676.1| hypothetical protein WUBG_00414 [Wuchereria bancrofti]
Length = 269
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 356 SHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEG------IDFLKCEVVGQSFMLHQIR 409
+ NF +RT ED S+ RYI F VE ++F+ + GQSFMLHQIR
Sbjct: 12 TFNFAQEFSRT-YEDRSSMRYIHDFKCGPTQLVEDEVRGGMVEFITLYITGQSFMLHQIR 70
Query: 410 KMIGLAVAVVRN-CAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHE 467
KMIG+ VA R C + T L + ++VP AP +GL LD+ + Y+K + +H+
Sbjct: 71 KMIGMTVATFRGLCGKTEVANTFLSE--RMDVPKAPGLGLVLDKVHYERYDKWHEKTHQ 127
>gi|303389002|ref|XP_003072734.1| pseudouridine synthase 2 [Encephalitozoon intestinalis ATCC 50506]
gi|303301876|gb|ADM11374.1| pseudouridine synthase 2 [Encephalitozoon intestinalis ATCC 50506]
Length = 345
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 7/124 (5%)
Query: 335 GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIIS-FGADSVVNVEGIDF 393
G+ E++ + F IL+ Y G+ +FHNFT + +RYI S +D VN GI++
Sbjct: 167 GYTSSEDDLRVFEAILQKYTGTKDFHNFTKLN--SEKGTKRYIKSVIVSDPYVN-NGIEY 223
Query: 394 LKCEVVGQSFMLHQIRKMIGLAVAVVRNC--APQSLIETALQKDVNINVPTAPEVGLYLD 451
++ + GQSF+LHQIRKM+ + + R + +S + K+ NI+VP P L LD
Sbjct: 224 VRVSITGQSFLLHQIRKMMLFGILLCRYSRDSVESKFDMVFSKE-NIHVPKGPSEYLLLD 282
Query: 452 ECIF 455
+ F
Sbjct: 283 KPTF 286
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
+ Y G Y G+Q N T+E ++ L +S+R+ +P++ S+RTDKGV
Sbjct: 6 GLLVGYDGSKYHGLQFNKELDTVEKEIIGCLLEMEVISQRNADDPKKVHIKSSSRTDKGV 65
Query: 123 SAVGQVVSGRFCID-PPGLVERLNSNLP-TQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
A +VS + D P L+ L + L +I ++ R+T S K R Y Y++P
Sbjct: 66 HAALNLVSVKIEADITPELISGLRTLLSRKEIHLYDIIRLTKSTIPSKQAVFRAYEYIVP 125
Query: 181 VFAL 184
F L
Sbjct: 126 TFFL 129
>gi|86157969|ref|YP_464754.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774480|gb|ABC81317.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C]
Length = 272
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+RR A+ AY G ++G Q+ PG T++ LEEAL G R +A
Sbjct: 1 MERRSYALRLAYDGGRFRGFQRQPGLPTVQQALEEALERLGV----------RAQLHVAA 50
Query: 117 RTDKGVSAVGQVVS--GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
RTD GV A+ QVVS R +DP L LN LP I + RV SF+A+ R
Sbjct: 51 RTDAGVHALAQVVSFSARAALDPAALRRGLNEGLPEGILVLDAARVGPSFHARGSAASRT 110
Query: 175 YVYLL 179
YVYL+
Sbjct: 111 YVYLV 115
>gi|268529206|ref|XP_002629729.1| C. briggsae CBR-TAG-124 protein [Caenorhabditis briggsae]
Length = 401
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 32/165 (19%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAK-TIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
RRKIAI F Y G + G+ + P + T+E L EAL + + + + D++R R
Sbjct: 29 RRKIAIQFFYLGWEHDGLVQQPNTQNTVEHHLMEALIKTHIIEDSIKC-----DFSRCGR 83
Query: 118 TDKGVSAVGQV---VSGRFCIDPPGL-----------------------VERLNSNLPTQ 151
TDKGVSA Q ++ C D P + ++ LN LP
Sbjct: 84 TDKGVSAFKQTAAFLARSTCPDHPNVFWSDSTAEDVKNSYKSKDEELPYIKMLNGVLPKT 143
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVM 196
IR+F + V +FNA+ C++R Y Y P LD R+ ++
Sbjct: 144 IRVFAWAPVAPTFNARFDCNRRTYKYSFPKAGLDLEKMREAAKLL 188
>gi|302677288|ref|XP_003028327.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8]
gi|300102015|gb|EFI93424.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8]
Length = 296
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 70/152 (46%), Gaps = 12/152 (7%)
Query: 49 DSTTKRQLCKRRKIAIFFAYCGVGYQGM--QKN-PGAKTIEGDLEEALFHSGAVSERDRG 105
D T RRKIA+ F Y G Y G+ QK+ T+EG L AL + V + G
Sbjct: 35 DDTIDWANAPRRKIALKFCYGGWDYGGLAIQKDRTPLPTVEGKLFGALVRARLVDPK--G 92
Query: 106 NPRRYDWARSARTDKGVSAVGQVVS-------GRFCIDPPGLVERLNSNLPTQIRIFGYK 158
W R RTD+GVSA GQV+S + + P +N +LP I+I +
Sbjct: 93 GLEGCGWERCGRTDRGVSAAGQVISLWVRSALSQEELLPHPFTYMINRHLPDPIKILAWS 152
Query: 159 RVTASFNAKKFCDQRRYVYLLPVFALDSSSHR 190
V SF+++ C R Y Y P LD + R
Sbjct: 153 PVDLSFSSRYSCTWRHYKYFFPPVGLDIPAMR 184
>gi|342181822|emb|CCC91301.1| putative pseudouridylate synthase I [Trypanosoma congolense IL3000]
Length = 618
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 23/174 (13%)
Query: 54 RQLCKRRK------IAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDR 104
R+ C R+ I + YCG Y+G+Q P T+EG L +AL +G V R
Sbjct: 10 RRACLRKAPENHTLIGLCVMYCGTSYRGLQLQTHAPTHHTVEGVLIQALKDAGIVDGLHR 69
Query: 105 G--NPRRYDWARSARTDKGVSAVGQVV-----SGRFCIDPPG----LVERLNSNLPTQIR 153
G + + +ARS RTD+GV AV ++ +GR ++ G L ++LN+ LP+ IR
Sbjct: 70 GRVSGDAHRFARSCRTDRGVHAVRNLICLFVDNGR--LESAGGCRCLPQKLNALLPSTIR 127
Query: 154 IFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVK 207
+ ++ F + CD+R Y Y++P +AL S E GS NEL++
Sbjct: 128 VAHATQLMGDFVPRFCCDRRVYRYMIPAYALMSPCTSWEEFYTKFPGS-NELLQ 180
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 391 IDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
+ F+ ++ G+SF+ + IRK++GL +AV+R A ++L E L ++ N P AP L L
Sbjct: 313 LPFVVFQIEGRSFLFNMIRKIVGLTLAVLRG-ARETLFEEVLSREWQANCPLAPSPYLLL 371
Query: 451 DECIFASYNKK 461
+ + SY++K
Sbjct: 372 FQSFYGSYDRK 382
>gi|170583043|ref|XP_001896407.1| tRNA pseudouridine synthase family protein [Brugia malayi]
gi|158596407|gb|EDP34752.1| tRNA pseudouridine synthase family protein [Brugia malayi]
Length = 234
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 68/146 (46%), Gaps = 29/146 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM-QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+R+IA+ F Y G Y G+ ++ A+T+E ++ +AL + V N W RS R
Sbjct: 29 KRRIALMFMYFGWEYNGLVEQREIARTVEEEMRKALIKTKLVE-----NWENCSWNRSGR 83
Query: 118 TDKGVSAVGQVVS-----------GRFCIDPPG------------LVERLNSNLPTQIRI 154
TDKGVSA QV S G F + V+ LNS LPT IR+
Sbjct: 84 TDKGVSAFKQVASVIVRSNEPEGEGVFWPNVAHASSETAMKGELQYVKMLNSTLPTNIRV 143
Query: 155 FGYKRVTASFNAKKFCDQRRYVYLLP 180
+ V +F+A+ C QR Y Y P
Sbjct: 144 LAWAPVPRNFSARYNCTQRTYTYAFP 169
>gi|197122727|ref|YP_002134678.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K]
gi|196172576|gb|ACG73549.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K]
Length = 272
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+RR A+ AY G ++G Q+ PG T++ LEEAL G R +A
Sbjct: 1 MERRSYALRLAYDGGRFRGFQRQPGLPTVQQALEEALERLGL----------RAQLHVAA 50
Query: 117 RTDKGVSAVGQVVS--GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
RTD GV A+ QVVS R +DP L LN LP I + RV SF+A+ R
Sbjct: 51 RTDAGVHALAQVVSFSARAALDPAALRRGLNEGLPEGILVLDAARVGPSFHARGSAIART 110
Query: 175 YVYLL 179
YVYL+
Sbjct: 111 YVYLV 115
>gi|170586436|ref|XP_001897985.1| tRNA pseudouridine synthase A [Brugia malayi]
gi|158594380|gb|EDP32964.1| tRNA pseudouridine synthase A, putative [Brugia malayi]
Length = 260
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 369 EDPSARRYIISFGADSVVNVEG------IDFLKCEVVGQSFMLHQIRKMIGLAVAVVRN- 421
ED S+ RYI F VE ++F+ + GQSFMLHQIRKMIG+ VA R
Sbjct: 19 EDRSSMRYIHDFKCGPTQLVEDEVRGGMVEFITLYITGQSFMLHQIRKMIGMTVATFRGL 78
Query: 422 CAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHE 467
C + T L + ++VP AP +GL LD+ + Y+K + +H+
Sbjct: 79 CGKTEVANTFLSE--RMDVPKAPGLGLVLDKVHYERYDKWHEKTHQ 122
>gi|440493351|gb|ELQ75836.1| Pseudouridylate synthase, partial [Trachipleistophora hominis]
Length = 212
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 17/126 (13%)
Query: 349 ILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQI 408
IL Y G+ N+HNFT ++ S R+I + + N + + ++ GQSFM+HQI
Sbjct: 41 ILALYTGTRNYHNFTQQSNTRGKS--RHITNIRVERAHN----GWYEIKITGQSFMMHQI 94
Query: 409 RKMIGLAVAVVR-----NCAP-----QSLIETALQKDVNINVPTAPEVGLYLDECIFASY 458
RKMIG + V+ P ++L A + V +NVP AP L+LD +FA Y
Sbjct: 95 RKMIGFVLLVINWGGEDGAVPAMERIRALFGCAFSERV-LNVPKAPAHALFLDAPVFAGY 153
Query: 459 NKKWKD 464
N ++++
Sbjct: 154 NGRYEN 159
>gi|294494718|ref|YP_003541211.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219]
gi|292665717|gb|ADE35566.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219]
Length = 273
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++A+ AY G Y+G Q PG TIEG + EAL S + E +P + S RTD
Sbjct: 2 RVALKIAYIGSSYRGSQVQPGVSTIEGKIFEAL-QSLEIIE----DPSSARFVSSGRTDT 56
Query: 121 GVSAVGQVVSGRFCIDPPGL-VER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A+GQVV+ F D P L + R +NS LP I + V + F+ +++ R Y Y+
Sbjct: 57 GVHAMGQVVA--FDTDKPKLAIPRVINSKLPGDIWAWSRAEVDSDFHPRRYAINRTYRYI 114
Query: 179 LPVFALDSSSHRDRESVM 196
P D S R S++
Sbjct: 115 TPSMDADISKLRAACSIL 132
>gi|403262406|ref|XP_003923581.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Saimiri boliviensis
boliviensis]
Length = 477
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 68/147 (46%), Gaps = 26/147 (17%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 61 RRHVALRIAYMGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTAN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVS---------GR----FCIDPPGLVER-----LNSNLPTQIRIFGYK 158
RTDKGVSA GQV+S GR F + E LN LP IRI +
Sbjct: 115 RTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEAAEEIRYTHILNRVLPPDIRILAWA 174
Query: 159 RVTASFNAKKFCDQRRYVYLLPVFALD 185
V SF+A+ C +R Y Y P LD
Sbjct: 175 PVEPSFSARFSCLERTYRYFFPRADLD 201
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-----IDFLKC--EVVGQSFM 404
YVG+H+F N A + +R I+S V G + F C EV GQ+F+
Sbjct: 212 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEERWQVPFQLCQFEVTGQAFL 271
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYNKK 461
HQ+R M+ + + + +I+ L + N P A E L L +C F N K
Sbjct: 272 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFE--NVK 329
Query: 462 W 462
W
Sbjct: 330 W 330
>gi|123438137|ref|XP_001309856.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
gi|121891601|gb|EAX96926.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
Length = 365
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 14/129 (10%)
Query: 62 IAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVS-ERDRGNPRRYDWARSARTDK 120
IA+ + Y G Y G + KT+ +L+EAL + G +S R +G + W+ S+RTD
Sbjct: 40 IALCYGYLGTNYHGSSLHDQDKTVTLELQEALVNLGVISPNRTKGALK---WSESSRTDT 96
Query: 121 GVSAVGQVVSGRFCI-------DPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
GV A QV + R + D P L+++ L+ N P IR++ + FNA++
Sbjct: 97 GVHAAKQVATFRLVLPEGVKVKDLPRLIQKQLSKNSP--IRVWAAVKPGIIFNAQQSASS 154
Query: 173 RRYVYLLPV 181
RRY YLLPV
Sbjct: 155 RRYHYLLPV 163
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 353 YVGSHNFHNFTTRTKAED-PSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKM 411
+VG H + N+T E ++ + I F +V G ++ + G SFML+QIRKM
Sbjct: 185 FVGRHQYANYTRHITDELLHTSIKTISEFTFTDPFDVNGTKYVLFTISGNSFMLNQIRKM 244
Query: 412 IGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIF 455
I +AV + + ++ L + +P GL+LD+ F
Sbjct: 245 IAAVLAVSHHLMTEDDLKDTL-TETRWLLPRLIGTGLFLDQVFF 287
>gi|290984657|ref|XP_002675043.1| predicted protein [Naegleria gruberi]
gi|284088637|gb|EFC42299.1| predicted protein [Naegleria gruberi]
Length = 430
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
R IA+ AY G YQG+ K TIE L EAL + D ++ + RT
Sbjct: 68 RHIALKIAYLGFNYQGLSKQLHTPNTIEHHLFEALKTLKLIEHEDNC-----EFTKCGRT 122
Query: 119 DKGVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
DKGVSA+GQVVS +P V +NS LP IR+ + V+ F+A+ C QR Y
Sbjct: 123 DKGVSALGQVVSFNCRYNPKKNDYVRLINSLLPDDIRVLAWCPVSKDFDARFGCLQRTYK 182
Query: 177 YLL 179
Y
Sbjct: 183 YYF 185
>gi|366990335|ref|XP_003674935.1| hypothetical protein NCAS_0B04790 [Naumovozyma castellii CBS 4309]
gi|342300799|emb|CCC68563.1| hypothetical protein NCAS_0B04790 [Naumovozyma castellii CBS 4309]
Length = 444
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Query: 60 RKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
R +A+ FAY G Y G+ Q P TIEG + EAL S V NPR Y ++R
Sbjct: 86 RFVALRFAYLGWNYNGLAIQNEPTPLPTIEGKILEALHISRLVPSM---NPREYQFSRCG 142
Query: 117 RTDKGVSAVGQVVSGRF--------CIDPPG------LVERLNSNLPTQIRIFGY-KRVT 161
RTDKGVSA+ QV+S R +DP V LN LP IR+ R
Sbjct: 143 RTDKGVSAMNQVISLRVRSNLTPEEQLDPANDRREIKYVHILNQLLPDDIRVSAVCLRPP 202
Query: 162 ASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLG 200
F+A+ C+ R Y YL LD S R +E LG
Sbjct: 203 EGFDARFSCESRHYKYLFSNDGLDIS--RMQEGATLFLG 239
>gi|220917510|ref|YP_002492814.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955364|gb|ACL65748.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1]
Length = 272
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+RR A+ AY G ++G Q+ PG T++ LEEAL G R +A
Sbjct: 1 MERRSYALRLAYDGGRFRGFQRQPGLPTVQQALEEALERLGV----------RAQLHVAA 50
Query: 117 RTDKGVSAVGQVV--SGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
RTD GV A+ QVV S R +DP L LN LP I + RV SF+A+ R
Sbjct: 51 RTDAGVHALAQVVSFSARAALDPVALRGGLNEGLPEGILVLDAARVGPSFHARGSAIART 110
Query: 175 YVYLL 179
YVYL+
Sbjct: 111 YVYLV 115
>gi|426251725|ref|XP_004019572.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Ovis aries]
Length = 481
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 92/215 (42%), Gaps = 44/215 (20%)
Query: 4 AETNTEKLPSPSLSPR---QEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQL---- 56
AE + +++ + L R E + KRLK + D ++ ++GA KR
Sbjct: 2 AENDADRIQTEKLLQRVQELEQEVKRLKKEQANNKDA--NIRENSSGAGGKAKRAFDFSA 59
Query: 57 CKRRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
+R +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 60 HGQRHVALKIAYLGWGYQGFASQENT-SNTIEEKLFEALTKTRLVENRQTSN-----YHR 113
Query: 115 SARTDKGVSAVGQVVS----GRFCIDPPG--------------------LVERLNSNLPT 150
RTDKGVSA GQV+S F P G LN LP
Sbjct: 114 CGRTDKGVSAFGQVISLDLRSHF---PKGRDSEDFNLKDEVNDVATEIRYTHILNRVLPP 170
Query: 151 QIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
IR+ + V SF+A+ C +R Y Y P LD
Sbjct: 171 DIRVLAWAPVETSFSARFSCLERTYRYFFPCANLD 205
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPS-ARRYIISFGADSV---VNVEGID--FLKC--E 397
N + YVG+H+F N A + +R I+S V + EG F C E
Sbjct: 209 MNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSAQVQRVGQNLAEEGWQEPFQLCQFE 268
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
V GQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C
Sbjct: 269 VTGQAFLYHQVRCMMAILFLIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 328
Query: 455 FASYNKKW 462
F N KW
Sbjct: 329 FE--NIKW 334
>gi|77735971|ref|NP_001029684.1| tRNA pseudouridine(38/39) synthase [Bos taurus]
gi|119391067|sp|Q3SX07.1|PUS3_BOVIN RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|74356305|gb|AAI04570.1| Pseudouridylate synthase 3 [Bos taurus]
Length = 481
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 90/212 (42%), Gaps = 38/212 (17%)
Query: 4 AETNTEKLPSPSLSPR---QEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQL---- 56
AE + +++ + L R E + KRLK + D ++ ++GA KR
Sbjct: 2 AENDVDRIQTEKLLKRVQELEQEVKRLKKEQANNKDS--NIRENSSGAGGKPKRAFDFSA 59
Query: 57 CKRRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
+R +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 60 HGQRHVALKIAYLGWGYQGFASQENT-SNTIEEKLFEALTKTRLVENRQTSN-----YHR 113
Query: 115 SARTDKGVSAVGQVVSGRFCIDPPG---------------------LVERLNSNLPTQIR 153
RTDKGVSA GQV+S P LN LP IR
Sbjct: 114 CGRTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIR 173
Query: 154 IFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ + V SF+A+ C +R Y Y P LD
Sbjct: 174 VLAWAPVETSFSARFSCLERTYRYFFPRANLD 205
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDP-SARRYIISFGADSV---VNVEGID--FLKC--E 397
N + YVG+H+F N A + +R I+S V + EG F C E
Sbjct: 209 MNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFE 268
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
V GQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C
Sbjct: 269 VTGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 328
Query: 455 FASYNKKW 462
F N KW
Sbjct: 329 FE--NIKW 334
>gi|66807627|ref|XP_637536.1| hypothetical protein DDB_G0286567 [Dictyostelium discoideum AX4]
gi|60465972|gb|EAL64039.1| hypothetical protein DDB_G0286567 [Dictyostelium discoideum AX4]
Length = 615
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 14/155 (9%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAK--TIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
++ +A+ FAY G Y G + + IE +E++L +G ++ + GN +R +RS+
Sbjct: 147 KKPMALCFAYNGSKYYGSSYSFDIRFPAIENLIEKSLIRNGHIALENIGNLKRIKLSRSS 206
Query: 117 RTDKGVSAVGQVVSGRFCID------------PPGLVERLNSNLPTQIRIFGYKRVTASF 164
RTDKGV +V V+S ID P ++ +N LP+ IR+ + + +F
Sbjct: 207 RTDKGVHSVSTVISAFLLIDKETERLAQFGTPPQYFIDNINRYLPSDIRLISATKPSRTF 266
Query: 165 NAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASL 199
A+ R Y YL+P+ L S S++++
Sbjct: 267 RARPASKSRVYNYLVPMDHLKDISIDRMNSILSNF 301
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 369 EDPSARRYIISFGADS-VVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSL 427
++P R I++F + V EG + + VVG SF+++QIRKM+G ++VV+ +
Sbjct: 390 KNPVNVRTIMNFYVEKETVLFEGKQWYRFVVVGDSFLMYQIRKMMGFFLSVVKGYQNEIG 449
Query: 428 IETALQKDVNINVPTAPEVGLYLDECIF 455
++ +L+ +I P +P L+L + F
Sbjct: 450 LQLSLKSPFSICSPISPPFPLFLYDVNF 477
>gi|312090526|ref|XP_003146648.1| tRNA pseudouridine synthase A [Loa loa]
Length = 238
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 7/100 (7%)
Query: 375 RYIISF--GADSVV--NVEG--IDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLI 428
RYI F G +V V G ++F+ V GQSFMLHQIRKMIG+ VA R ++ +
Sbjct: 2 RYIHDFKCGPTQLVEDKVRGGMVEFISLYVTGQSFMLHQIRKMIGMTVATFRGLCGKTEL 61
Query: 429 ETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
E + + ++VP AP +GL LD+ + Y++ ++ +H++
Sbjct: 62 ENTFRSE-RMDVPKAPGLGLVLDKVHYERYDRWYEKTHQK 100
>gi|296471772|tpg|DAA13887.1| TPA: tRNA pseudouridine synthase 3 [Bos taurus]
Length = 481
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 90/212 (42%), Gaps = 38/212 (17%)
Query: 4 AETNTEKLPSPSLSPR---QEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQL---- 56
AE + +++ + L R E + KRLK + D ++ ++GA KR
Sbjct: 2 AENDVDRIQTEKLLKRVQELEQEVKRLKKEQANNKDS--NIRENSSGAGGKPKRAFDFSA 59
Query: 57 CKRRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
+R +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 60 HGQRHVALKIAYLGWGYQGFASQENT-SNTIEEKLFEALTKTRLVENRQTSN-----YHR 113
Query: 115 SARTDKGVSAVGQVVSGRFCIDPPG---------------------LVERLNSNLPTQIR 153
RTDKGVSA GQV+S P LN LP IR
Sbjct: 114 CGRTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIR 173
Query: 154 IFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ + V SF+A+ C +R Y Y P LD
Sbjct: 174 VLAWAPVETSFSARFSCLERTYRYFFPRANLD 205
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDP-SARRYIISFGADSV---VNVEGID--FLKC--E 397
N + YVG+H+F N A + +R I+S V + EG F C E
Sbjct: 209 MNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFE 268
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
V GQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C
Sbjct: 269 VTGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 328
Query: 455 FASYNKKW 462
F N KW
Sbjct: 329 FE--NIKW 334
>gi|261329198|emb|CBH12177.1| pseudouridylate synthase I, putative [Trypanosoma brucei gambiense
DAL972]
Length = 618
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 26/155 (16%)
Query: 54 RQLCKRR------KIAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVS--ER 102
R+ C R+ I + YCG ++G+Q P T+EG L +AL +G V +R
Sbjct: 10 RRACLRKAPRDHTHIGLCVMYCGTAFRGLQLQAHAPTHHTVEGVLIQALKDAGIVDGVQR 69
Query: 103 DRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG-----------LVERLNSNLPTQ 151
R + + +ARS RTD+GV AV +V C+ P L + LN++LP+
Sbjct: 70 GRVSGEEHHFARSCRTDRGVHAVRNLV----CLFVPNSKLEAAGGCDRLPQLLNAHLPST 125
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDS 186
+R+ V F + C R Y Y++PV+AL S
Sbjct: 126 VRVERVTTVMGDFIPRFCCVSRIYRYMIPVYALLS 160
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 391 IDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
+ +L ++ G+SF+ + IRK++GL +AV+R A +SL++ L + + P AP+ LYL
Sbjct: 311 LPYLLFQIEGRSFLFNMIRKIVGLIIAVLRG-ARESLMQETLSAERHALCPLAPDSFLYL 369
Query: 451 DECIFASYNKKWKDS 465
+ SY+ + + S
Sbjct: 370 FHSFYTSYDNRVRRS 384
>gi|72390962|ref|XP_845775.1| pseudouridylate synthase I [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175816|gb|AAX69943.1| pseudouridylate synthase I, putative [Trypanosoma brucei]
gi|70802311|gb|AAZ12216.1| pseudouridylate synthase I, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 618
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 26/155 (16%)
Query: 54 RQLCKRR------KIAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVS--ER 102
R+ C R+ I + YCG ++G+Q P T+EG L +AL +G V +R
Sbjct: 10 RRACLRKAPRDHTHIGLCVMYCGTAFRGLQLQAHAPTHHTVEGVLIQALKDAGIVDGVQR 69
Query: 103 DRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG-----------LVERLNSNLPTQ 151
R + + +ARS RTD+GV AV +V C+ P L + LN++LP+
Sbjct: 70 GRVSGEEHHFARSCRTDRGVHAVRNLV----CLFVPNSKLEAAGGCDRLPQLLNAHLPST 125
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDS 186
+R+ V F + C R Y Y++PV+AL S
Sbjct: 126 VRVERVTTVMGDFIPRFCCVSRIYRYMIPVYALLS 160
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 391 IDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
+ +L ++ G+SF+ + IRK++GL +AV+R A +SL++ L + + P AP LYL
Sbjct: 311 LPYLLFQIEGRSFLFNMIRKIVGLIIAVLRG-ARESLMQETLSAERHALCPLAPGSFLYL 369
Query: 451 DECIFASYNKKWKDS 465
+ SY+ + + S
Sbjct: 370 FHSFYTSYDNRVRRS 384
>gi|448689644|ref|ZP_21695228.1| tRNA pseudouridine synthase A [Haloarcula japonica DSM 6131]
gi|445777915|gb|EMA28875.1| tRNA pseudouridine synthase A [Haloarcula japonica DSM 6131]
Length = 275
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G Y G Q+ P T+EG L AL G V ER G P RY A + RTD GVSA
Sbjct: 7 AYDGRPYHGFQRQPDVDTVEGRLRSALVRLG-VCERGEGLPERY--AAAGRTDAGVSARA 63
Query: 127 QVVSGRFCIDPPGLVER--LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
Q ++ D P + N LP +R++ VT F+A QR Y Y L
Sbjct: 64 QTIA----FDAPAWLSPAVFNGQLPDDVRVWASADVTEGFHATYDATQRTYTYYL 114
>gi|303391559|ref|XP_003074009.1| tRNA pseudouridine synthase A [Encephalitozoon intestinalis ATCC
50506]
gi|303303158|gb|ADM12649.1| tRNA pseudouridine synthase A [Encephalitozoon intestinalis ATCC
50506]
Length = 317
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 76/160 (47%), Gaps = 30/160 (18%)
Query: 55 QLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
Q RR +A+ +Y G Y GM G +T+ G LE AL +G G Y
Sbjct: 30 QCLSRRTVALRISYDGRRYSGMAPQSGKETVGGHLENALKFTGL------GEKLVY---- 79
Query: 115 SARTDKGVSAVGQVVSGRFC--IDPPG----LVER----------LNSNLPTQIRIFGYK 158
+ RTD GVSA+ VVSG F I+ P + E LNS+LP+ IR+ G+
Sbjct: 80 AGRTDAGVSAISMVVSGVFISRIEMPNRSYVVTESDYKEYKYDMILNSHLPSDIRVIGWA 139
Query: 159 RVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMAS 198
V +F+A+ C QR+Y Y LD+ DR MAS
Sbjct: 140 PVPDTFSARFTCIQRQYRYYFHKEDLDA----DRMREMAS 175
>gi|395846476|ref|XP_003795929.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Otolemur garnettii]
Length = 480
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR IA+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 61 RRHIALKMAYLGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVS----GRFCIDPPG-----------------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S +F D LN LP IRI
Sbjct: 115 RTDKGVSAFGQVISLDLRSQFPRDRDSEDFNLKDEASSAAKEIRYTHILNRVLPPDIRIL 174
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ V SF+A+ C +R Y Y P LD
Sbjct: 175 AWAPVEPSFSARFSCLERTYRYFFPHADLD 204
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 13/138 (9%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNV------ 388
F + + + + N + YVG+H+F NF A + +R I+S V
Sbjct: 198 FPHADLDIETMNYAAQKYVGTHDFRNFCKMDVANGVINFQRTILSAQVQLVGQSLSEERW 257
Query: 389 -EGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAP 444
E + EV+GQ+F+ HQ+R M+ + + + +I+ L + N P A
Sbjct: 258 QEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAI 317
Query: 445 EVGLYLDECIFASYNKKW 462
E L L +C F N KW
Sbjct: 318 EFPLVLYDCKFE--NIKW 333
>gi|350588615|ref|XP_003482688.1| PREDICTED: tRNA pseudouridine synthase 3-like [Sus scrofa]
Length = 479
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQENT-SNTIEEKLFEALTKTRLVENRQTSN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVS----GRFCIDPPG-----------------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S F D LN LP IR+
Sbjct: 115 RTDKGVSAFGQVISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDIRVL 174
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ V SF+A+ C +R Y Y P LD
Sbjct: 175 AWAPVEPSFSARFSCLERTYRYFFPHADLD 204
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 346 FNRILKHYVGSHNFHNF--------TTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCE 397
N + YVG+H+F N T + SA+ ++S + E + E
Sbjct: 208 MNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSAQVQLLSQSLEEERWQEAFQLCQFE 267
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
VVGQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C
Sbjct: 268 VVGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 327
Query: 455 FASYNKKW 462
F N KW
Sbjct: 328 FE--NIKW 333
>gi|89266772|emb|CAJ81267.1| pseudouridine synthase 3 [Xenopus (Silurana) tropicalis]
Length = 505
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 62/133 (46%), Gaps = 11/133 (8%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAK-TIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
++ +A+ AY G GYQG K T+E + AL + V R N + R R
Sbjct: 61 KQHVALRLAYLGWGYQGFASQENTKNTVEETVFNALIKTRLVESRQTSN-----YHRCGR 115
Query: 118 TDKGVSAVGQVVSGRFCIDPPG-----LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
TD+GVSA+GQV+S G V LN LP IR+ + V SF+A+ C
Sbjct: 116 TDRGVSALGQVISLDLRCSGEGKPEIRYVHILNRVLPPDIRVLSWAAVPPSFSARFSCRS 175
Query: 173 RRYVYLLPVFALD 185
R Y YL LD
Sbjct: 176 RTYRYLFSCAQLD 188
>gi|347800645|ref|NP_001231651.1| pseudouridylate synthase 3 [Sus scrofa]
Length = 479
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQEN-TSNTIEEKLFEALTKTRLVENRQTSN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVS----GRFCIDPPG-----------------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S F D LN LP IR+
Sbjct: 115 RTDKGVSAFGQVISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDIRVL 174
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ V SF+A+ C +R Y Y P LD
Sbjct: 175 AWAPVEPSFSARFSCLERTYRYFFPHADLD 204
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 346 FNRILKHYVGSHNFHNF--------TTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCE 397
N + Y G+H+F N T + SA+ ++S + E + E
Sbjct: 208 MNYAAQKYDGTHDFRNLCKMDVANGVTNFQRTILSAQVQLLSQSLEEERWQEAFQLCQFE 267
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
VVGQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C
Sbjct: 268 VVGQAFLYHQVRCMMAVLFPIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 327
Query: 455 FASYNKKW 462
F N KW
Sbjct: 328 FE--NIKW 333
>gi|402895728|ref|XP_003910970.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Papio anubis]
Length = 481
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 85/192 (44%), Gaps = 35/192 (18%)
Query: 21 EPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQL----CKRRKIAIFFAYCGVGYQGM 76
E + +RL+ T +D ++ ++GA TKR RR +A+ AY G GYQG
Sbjct: 22 EQEVQRLRKEQTKNKEDS-NIRENSSGA-GKTKRAFDFSAHGRRHVALRIAYMGWGYQGF 79
Query: 77 --QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS---- 130
Q+N TIE L EAL + V R N + R RTDKGVSA GQV+S
Sbjct: 80 ASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCGRTDKGVSAFGQVISLDLR 133
Query: 131 -----GR----FCIDPPG--------LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQR 173
GR F + LN LP IRI + V SF+A+ C +R
Sbjct: 134 SQFPRGRDSEDFNVKEEANATAEEIRYTHILNRVLPPDIRILAWAPVEPSFSARFSCLER 193
Query: 174 RYVYLLPVFALD 185
Y Y P LD
Sbjct: 194 TYRYFFPRADLD 205
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCEVVGQSFM 404
YVG+H+F N A + +R I+S V G + EV GQ+F+
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFL 275
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYNKK 461
HQ+R M+ + + + +I+ L + N P A E L L +C F N K
Sbjct: 276 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFE--NVK 333
Query: 462 W 462
W
Sbjct: 334 W 334
>gi|296216591|ref|XP_002754614.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Callithrix jacchus]
Length = 477
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 64/147 (43%), Gaps = 26/147 (17%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 61 RRHVALKIAYMGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVSGRFCIDPPG------------------LVERLNSNLPTQIRIFGYK 158
RTDKGVSA GQV+S P LN LP IRI +
Sbjct: 115 RTDKGVSAFGQVISLDLRSQFPRRRDSEDFNVKEEAAEEIRYTHILNRVLPPDIRILAWA 174
Query: 159 RVTASFNAKKFCDQRRYVYLLPVFALD 185
V SF+A+ C +R Y Y P LD
Sbjct: 175 PVEPSFSARFSCLERTYRYFFPRADLD 201
>gi|298674065|ref|YP_003725815.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303]
gi|298287053|gb|ADI73019.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303]
Length = 277
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++++A+ AY G Y G Q P TIEG+L ++L + + +P+ ++ S RT
Sbjct: 2 KKRMALKLAYIGTEYHGSQVQPELPTIEGELFKSLKNLEIID-----DPKSANFVSSGRT 56
Query: 119 DKGVSAVGQVVSGRFCIDPPGL-VER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
D GV ++GQVV+ F D P L V R +NS LP I + Y V FN + RRY+
Sbjct: 57 DTGVHSLGQVVT--FDTDNPRLAVPRVINSQLPESIWAWAYAVVPDEFNPRHGAFSRRYL 114
Query: 177 YLL 179
Y++
Sbjct: 115 YIM 117
>gi|9652099|gb|AAF91402.1|AF266505_1 pseudouridine synthase 3 [Mus musculus]
Length = 481
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 63 RRHVALKIAYLGWGYQGFASQEN-TSNTIEEKLFEALTKTRLVESRQTSN-----YHRCG 116
Query: 117 RTDKGVSAVGQVVSGRFCIDPPG---------------------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S P LN LP IR+
Sbjct: 117 RTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVL 176
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALDSSS 188
+ V SF+A+ C +R Y Y P LD ++
Sbjct: 177 AWAPVEPSFSARFSCLERTYRYFFPRADLDIAT 209
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 13/133 (9%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCE 397
N + YVG+H+F N A +R I+ V G + E
Sbjct: 210 MNYAAQKYVGTHDFRNLCKMDVANGVIDFQRTILCAQVQLVAQSPGEERRQEPFQLCQFE 269
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
V+GQ+F+ HQ+R M+ + + + +I+ L N P A E L L +C
Sbjct: 270 VIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQKNPQKPQYSMAVEFPLVLYDCK 329
Query: 455 FASYNKKWKDSHE 467
F N KW HE
Sbjct: 330 FE--NTKWIYDHE 340
>gi|227499255|ref|NP_075781.3| tRNA pseudouridine(38/39) synthase [Mus musculus]
gi|52783242|sp|Q9JI38.2|PUS3_MOUSE RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|22137577|gb|AAH29253.1| Pseudouridine synthase 3 [Mus musculus]
gi|148693450|gb|EDL25397.1| pseudouridine synthase 3, isoform CRA_c [Mus musculus]
Length = 481
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 63 RRHVALKIAYLGWGYQGFASQEN-TSNTIEEKLFEALTKTRLVESRQTSN-----YHRCG 116
Query: 117 RTDKGVSAVGQVVSGRFCIDPPG---------------------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S P LN LP IR+
Sbjct: 117 RTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVL 176
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALDSSS 188
+ V SF+A+ C +R Y Y P LD ++
Sbjct: 177 AWAPVEPSFSARFSCLERTYRYFFPRADLDIAT 209
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 13/133 (9%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCE 397
N + YVG+H+F N A + +R I+ V G + E
Sbjct: 210 MNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFE 269
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
V+GQ+F+ HQ+R M+ + + + +I+ L N P A E L L +C
Sbjct: 270 VIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQKNPQKPQYSMAVEFPLVLYDCK 329
Query: 455 FASYNKKWKDSHE 467
F N KW HE
Sbjct: 330 FE--NTKWIYDHE 340
>gi|426370989|ref|XP_004052438.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Gorilla gorilla
gorilla]
Length = 481
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 68/150 (45%), Gaps = 29/150 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCG 115
Query: 117 RTDKGVSAVGQVVS---------GR----FCIDPPGLV--------ERLNSNLPTQIRIF 155
RTDKGVSA GQV+S GR F + V LN LP IRI
Sbjct: 116 RTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANVAAEEIRYTHILNRVLPPDIRIL 175
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ V SF+A+ C +R Y Y P LD
Sbjct: 176 AWAPVEPSFSARFSCLERTYRYFFPRADLD 205
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCEVVGQSFM 404
YVG+H+F N A + +R I+S V G + EV GQ+F+
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVRQSPGEGRWQEPFQLCQFEVTGQAFL 275
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYNKK 461
HQ+R M+ + + + +I+ L + N P A E L L +C F N K
Sbjct: 276 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFE--NVK 333
Query: 462 W 462
W
Sbjct: 334 W 334
>gi|26347775|dbj|BAC37536.1| unnamed protein product [Mus musculus]
Length = 481
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 63 RRHVALKIAYLGWGYQGFASQEN-TSNTIEEKLFEALTKTRLVESRQTSN-----YHRCG 116
Query: 117 RTDKGVSAVGQVVSGRFCIDPPG---------------------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S P LN LP IR+
Sbjct: 117 RTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVL 176
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALDSSS 188
+ V SF+A+ C +R Y Y P LD ++
Sbjct: 177 AWAPVEPSFSARFSCLERTYRYFFPRADLDIAT 209
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 13/133 (9%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCE 397
N + YVG+H+F N A + +R I+ V G + E
Sbjct: 210 MNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFE 269
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
V+GQ+F+ HQ+R M+ + + + +I+ L N P A E L L +C
Sbjct: 270 VIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQKNPQKPQYSMAVEFPLVLYDCK 329
Query: 455 FASYNKKWKDSHE 467
F N KW HE
Sbjct: 330 FE--NTKWIYDHE 340
>gi|355714592|gb|AES05053.1| pseudouridylate synthase 3 [Mustela putorius furo]
Length = 479
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 85/204 (41%), Gaps = 32/204 (15%)
Query: 6 TNTEKLPSPSLSPRQEPDPKRLKMSATSTSD-DERDLIPAAAGADSTTKRQLCKRRKIAI 64
T TEKL QE +RLK + D + R+ AA A RR +A+
Sbjct: 9 TQTEKLLKRVQELEQEV--QRLKKEQANNKDSNVRENSLAAGKAKRAFDFSAHGRRHVAL 66
Query: 65 FFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
AY G GYQG Q+N TIE L EAL + V R N + R RTDKGV
Sbjct: 67 KIAYLGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCGRTDKGV 120
Query: 123 SAVGQVVS---------GRFCID------------PPGLVERLNSNLPTQIRIFGYKRVT 161
SA GQV+S GR D LN LP IR+ + V
Sbjct: 121 SAFGQVISLDLRSHFLKGRASEDCNVKDDVYDAAKEIRYTHILNRVLPPDIRVLAWAPVE 180
Query: 162 ASFNAKKFCDQRRYVYLLPVFALD 185
SF+A+ C +R Y Y P LD
Sbjct: 181 PSFSARFSCLERTYRYFFPRADLD 204
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDP--------SARRYIISFGADSVVNVEGIDFLKCE 397
N + YVG+H+F N A SA+ ++ D E + E
Sbjct: 208 MNHAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQTLDEETWQEPFQLCQFE 267
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
V+GQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C
Sbjct: 268 VIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNVEKNPQKPQYSMAVEFPLVLYDCK 327
Query: 455 FASYNKKW 462
F N KW
Sbjct: 328 FE--NIKW 333
>gi|334330487|ref|XP_001371991.2| PREDICTED: tRNA pseudouridine synthase 3-like [Monodelphis
domestica]
Length = 576
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+R +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 66 QRHVALKIAYLGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCG 119
Query: 117 RTDKGVSAVGQVVSGRF---------------------CIDPPGLVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S ++ LN LP IR+
Sbjct: 120 RTDKGVSAFGQVISLNLRSQLPRDKDPEDKNLKDTVNDSVEEICYTHILNRVLPPDIRVL 179
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRD 191
+ V +SF+A+ C +R Y Y P LD + D
Sbjct: 180 AWATVESSFSARFSCLERTYRYFFPCANLDIEAMND 215
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDP--------SARRYIISFGA--DSVVNVEGIDFLK 395
N + YVG+H+F N A SA+ +++FG+ + + E +
Sbjct: 213 MNDAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAKVQLVAFGSPEEKLQQQESFQLCQ 272
Query: 396 CEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDE 452
EV+GQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +
Sbjct: 273 FEVIGQAFLYHQVRCMMAILFLIGQRMEKAEIIDELLNIEKNPQKPQYSMAVEFPLVLYD 332
Query: 453 CIFASYNKKW 462
C F N KW
Sbjct: 333 CKFE--NIKW 340
>gi|149716663|ref|XP_001505142.1| PREDICTED: tRNA pseudouridine synthase 3 [Equus caballus]
Length = 479
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 84/208 (40%), Gaps = 32/208 (15%)
Query: 4 AETNTEKLPSPSLSPR---QEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRR 60
AE + +++ + L R E + +RLK + + R+ A RR
Sbjct: 2 AENDIDRIQTEKLLKRVQELEQEVQRLKEQTNNKDSNIRENYSGTGKAKRAFDFSAHGRR 61
Query: 61 KIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+A+ AY G GYQG Q+N TIE L EAL + V R N + R RT
Sbjct: 62 HVALRIAYLGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCGRT 115
Query: 119 DKGVSAVGQVVSGRFCIDPPG---------------------LVERLNSNLPTQIRIFGY 157
DKGVSA GQV+S P LN LP IR+ +
Sbjct: 116 DKGVSAFGQVISLDLRSHFPNGRDSEDFNLKDEVNDAAKEIRYTHILNRVLPPDIRVLAW 175
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFALD 185
V SF+A+ C +R Y Y P LD
Sbjct: 176 APVEPSFSARFSCLERTYRYFFPRADLD 203
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNV-------EGIDFLKCE 397
N + YVG+H+F N A + +R I+S V E + E
Sbjct: 207 MNSAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSLAEERGQEPFQLCQFE 266
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
V+GQ+F+ HQ+R M+ + + + +I+ L N P A E L L +C
Sbjct: 267 VIGQAFLYHQVRCMMAILFLIGQGMEKPEVIDELLNIQKNPQKPQYSMAVEFPLVLYDCK 326
Query: 455 FASYNKKW 462
F N KW
Sbjct: 327 FE--NIKW 332
>gi|300706061|ref|XP_002995341.1| hypothetical protein NCER_101809 [Nosema ceranae BRL01]
gi|239604377|gb|EEQ81670.1| hypothetical protein NCER_101809 [Nosema ceranae BRL01]
Length = 344
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 8/147 (5%)
Query: 308 DLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTK 367
DL +K+ ++ +R N E+ + + G+ +++ K F I ++G+ NFHNFTT +
Sbjct: 140 DLIAKDLNRDKMTKREYN-EKDIEQIFGYLADKDDIKYFCDIFTKFLGTKNFHNFTTLSN 198
Query: 368 AEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSL 427
+ +RYI + + ++ I+++K + GQSF+LHQIRKMI +V + R ++
Sbjct: 199 HK--GKQRYIKNIEFSNAYVIDDIEYIKITIEGQSFLLHQIRKMIYFSVLLCR--YKRNE 254
Query: 428 IETALQK---DVNINVPTAPEVGLYLD 451
T +K D ++VP P L LD
Sbjct: 255 FSTIFEKVFSDEYLHVPKGPSQYLLLD 281
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
Y G GY G+Q N TIE + E LF A+S ++ +P + S+RTDKGV A
Sbjct: 10 GYIGTGYSGLQLNGDYNTIEKAISECLFSCSAISSQNAKDPSKIHLKSSSRTDKGVHAAF 69
Query: 127 QVVSGRF-CIDPPGLVERLNSNLPTQ-IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
++S + C ++L L ++ I ++ R+T SF R Y Y+LP + L
Sbjct: 70 NLISCKIECQITDVFFQKLKECLFSKNIYLYKILRLTKSFIPTNLTISRTYEYILPTYFL 129
Query: 185 DSSS 188
S+
Sbjct: 130 AKSN 133
>gi|307102143|gb|EFN50538.1| hypothetical protein CHLNCDRAFT_138514 [Chlorella variabilis]
Length = 346
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYN 459
G SFMLHQIRKM+G+AVAV R P L+E +L IN+P AP L L +F+ +
Sbjct: 202 GSSFMLHQIRKMVGMAVAVARGNLPLELLEFSLATPARINLPLAPPSTLMLTGALFSPFK 261
Query: 460 KKW 462
+ W
Sbjct: 262 RSW 264
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 49/141 (34%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RK+A+F Y G G +G+Q + +TIE LEEA+F +G + +RGN
Sbjct: 41 KRKVALFVGYSGTGRRGLQMQRSSAPEETIEDVLEEAIFQAGGILPSNRGN--------- 91
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
+G+V R+F +RV+ S+NA++ C +R Y
Sbjct: 92 ---------LGKV------------------------RVFSVQRVSKSWNARRECIRRSY 118
Query: 176 VYLLPV----FALDSSSHRDR 192
Y +P ALD R
Sbjct: 119 SYFVPASVLGLALDGGKEDQR 139
>gi|336366370|gb|EGN94717.1| hypothetical protein SERLA73DRAFT_114183 [Serpula lacrymans var.
lacrymans S7.3]
Length = 464
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 20/142 (14%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGA---VSERDRGNPRRYD---W 112
RRKIA+ F Y G Y G+ G + +EE LF++ A + + D+G D W
Sbjct: 57 RRKIAVKFCYSGWEYNGLAFQNGPTPLP-TVEEVLFNAFAKTRLVDPDKG----LDGCGW 111
Query: 113 ARSARTDKGVSAVGQVVSGRFCIDPPG---------LVERLNSNLPTQIRIFGYKRVTAS 163
R RTD+GVSA GQVVS + P V LN LP IR+ + ++++
Sbjct: 112 ERCGRTDRGVSAAGQVVSLWPSMRQPSREETRSELRYVSILNRVLPPTIRVLAWSPISST 171
Query: 164 FNAKKFCDQRRYVYLLPVFALD 185
F+A+ C R Y Y LD
Sbjct: 172 FSARFNCQSRHYKYFFSPQELD 193
>gi|108708044|gb|ABF95839.1| tRNA pseudouridine synthase family protein, expressed [Oryza sativa
Japonica Group]
Length = 374
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 124/329 (37%), Gaps = 62/329 (18%)
Query: 136 DPPG--LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRE 193
DP G L +NSNLP +R+F SF+ ++ C R Y+YLLP + E
Sbjct: 16 DPDGIALSNFINSNLPDNVRVFSVLPAQRSFDVRRECLYREYLYLLPAEIIGIKGGCSSE 75
Query: 194 SVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTC 253
VM L N ++K E + R G KV S
Sbjct: 76 EVMEHLSEFNSILKGFEGNHPFHNYTARAKYRKVLAG-----------RHRKVKGASSAV 124
Query: 254 NGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDLSLDLDSKN 313
N +L+ S+ + E+ NS S+ + S E +N + S
Sbjct: 125 NSMPTEMSLDQSSSDDGTTSDHDEEDLNSSSI----IGSSVPEDSYKDNPEFS------- 173
Query: 314 DSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSA 373
E+++ + + + +E R N SH F + T + E
Sbjct: 174 -------------EKQVQIRARWLHEPDENDRLN-------ASH-FRDILTFSCGE---- 208
Query: 374 RRYIISFGADSV-VNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETAL 432
IS G V + + G+ F MLHQIRKM+G +VAV R P+ +I +L
Sbjct: 209 --LQISSGIQFVELTISGVSF----------MLHQIRKMVGTSVAVKRGLLPKDIIALSL 256
Query: 433 QKDVNINVPTAPEVGLYLDECIFASYNKK 461
K I +P AP L L + F NK+
Sbjct: 257 AKFSRIVLPIAPSEVLVLRDNSFCLRNKQ 285
>gi|432923365|ref|XP_004080439.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Oryzias
latipes]
Length = 471
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 71/160 (44%), Gaps = 33/160 (20%)
Query: 59 RRKIAIFFAYCGVGYQG--MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G YQG +Q+N T+E L EAL + + +R N + R
Sbjct: 74 RRHVALRLAYLGWAYQGFAVQENTD-NTVEARLFEALLKTRLIQDRQSSN-----YHRCG 127
Query: 117 RTDKGVSAVGQVV-----SGRFC----------IDPP----------GLVERLNSNLPTQ 151
RTDKGVSA QV+ S +FC +DP V+ LN LP
Sbjct: 128 RTDKGVSAFSQVITIDLRSTQFCGGLGVTVPEKVDPSIKSKAASSELPYVKMLNRVLPQD 187
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRD 191
IRI V F+A+ C R Y Y P +LD + D
Sbjct: 188 IRILDCAPVAEGFSARFDCQSRTYRYYFPRGSLDVALMED 227
>gi|157822367|ref|NP_001101604.1| tRNA pseudouridine synthase 3 [Rattus norvegicus]
gi|149027806|gb|EDL83266.1| pseudouridylate synthase 3 (predicted) [Rattus norvegicus]
gi|165971639|gb|AAI58694.1| Pseudouridylate synthase 3 [Rattus norvegicus]
Length = 479
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQENT-SNTIEEKLFEALIKTRLVESRQTSN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVSGRFCIDPP---------------------GLVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S P LN LP IR+
Sbjct: 115 RTDKGVSAFGQVISLDLRSQFPRSRDSEDSNLKDGADDIAKEIRYAHILNRVLPADIRVL 174
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALDSSS 188
+ SF+A+ C +R Y Y P LD ++
Sbjct: 175 AWAPAEPSFSARFSCLERTYRYFFPCADLDIAT 207
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 13/133 (9%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPS-ARRYIISFGADSVVNVEG-------IDFLKCE 397
N + YVG+H+F N A + +R I+S +V G + E
Sbjct: 208 MNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSAQVQTVAQSPGEEGRQGPFQLCQFE 267
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
V+GQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C
Sbjct: 268 VIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 327
Query: 455 FASYNKKWKDSHE 467
F N KW HE
Sbjct: 328 FE--NTKWIYDHE 338
>gi|12847644|dbj|BAB27651.1| unnamed protein product [Mus musculus]
Length = 316
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 63 RRHVALKIAYLGWGYQGFASQENT-SNTIEEKLFEALTKTRLVESRQTSN-----YHRCG 116
Query: 117 RTDKGVSAVGQVVSGRFCIDPPG---------------------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S P LN LP IR+
Sbjct: 117 RTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVL 176
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALDSSS 188
+ V SF+A+ C +R Y Y P LD ++
Sbjct: 177 AWAPVEPSFSARFSCLERTYRYFFPRADLDIAT 209
>gi|126302589|sp|Q9BZE2.3|PUS3_HUMAN RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|12276176|gb|AAG50280.1|AF325689_1 FKSG32 [Homo sapiens]
gi|189055315|dbj|BAG36917.1| unnamed protein product [Homo sapiens]
Length = 481
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 84/195 (43%), Gaps = 41/195 (21%)
Query: 21 EPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQL----CKRRKIAIFFAYCGVGYQGM 76
E + +RLK +D ++ +AGA TKR RR +A+ AY G GYQG
Sbjct: 22 EQEVQRLKKEQAKNKEDS-NIRENSAGA-GKTKRAFDFSAHGRRHVALRIAYMGWGYQGF 79
Query: 77 --QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS---- 130
Q+N TIE L EAL + V R N + R RTDKGVSA GQV+S
Sbjct: 80 ASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCGRTDKGVSAFGQVISLDLR 133
Query: 131 GRFCIDPPG--------------------LVERLNSNLPTQIRIFGYKRVTASFNAKKFC 170
+F P G LN LP IRI + V SF+A+ C
Sbjct: 134 SQF---PRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSARFSC 190
Query: 171 DQRRYVYLLPVFALD 185
+R Y Y P LD
Sbjct: 191 LERTYRYFFPRADLD 205
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCEVVGQSFM 404
YVG+H+F N A + +R I+S V G + EV GQ+F+
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFL 275
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYNKK 461
HQ+R M+ + + + +I+ L + N P A E L L +C F N K
Sbjct: 276 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFE--NVK 333
Query: 462 W 462
W
Sbjct: 334 W 334
>gi|304314991|ref|YP_003850138.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis
str. Marburg]
gi|302588450|gb|ADL58825.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis
str. Marburg]
Length = 273
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 8/120 (6%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
RKIA+ AY G Y G Q+ P T+EG L +AL +G + R G+ R + + RTD
Sbjct: 2 RKIALKVAYIGTNYHGFQRQPDVPTVEGKLLDALKEAGVI--RSPGDSR---FQIAGRTD 56
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
+GV A+G VS F + V ++N LP I++ + V F ++ +R Y Y+L
Sbjct: 57 RGVHALGNFVS--FFTEEEIHVNQINDLLPHDIKVLAWASVMYPFKV-RYPLERHYRYIL 113
>gi|440894412|gb|ELR46876.1| tRNA pseudouridine synthase 3 [Bos grunniens mutus]
Length = 481
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 90/210 (42%), Gaps = 34/210 (16%)
Query: 4 AETNTEKLPSPSLSPR-QEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQL----CK 58
AE + +++ + L R QE + + ++ ++ ++ ++GA KR
Sbjct: 2 AENDVDRIQTEKLLKRVQELEQEVKRLKKEQANNKNSNIRENSSGAGGKPKRAFDFSAHG 61
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+R +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 62 QRHVALKIAYLGWGYQGFASQENT-SNTIEEKLFEALTKTRLVENRQTSN-----YHRCG 115
Query: 117 RTDKGVSAVGQVVSGRFCIDPPG---------------------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S P LN LP IR+
Sbjct: 116 RTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRVL 175
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ V SF+A+ C +R Y Y P LD
Sbjct: 176 AWAPVETSFSARFSCLERTYRYFFPRANLD 205
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDP-SARRYIISFGADSV---VNVEGID--FLKC--E 397
N + YVG+H+F N A + +R I+S V + EG F C E
Sbjct: 209 MNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFE 268
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
V GQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C
Sbjct: 269 VTGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 328
Query: 455 FASYNKKW 462
F N KW
Sbjct: 329 FE--NIKW 334
>gi|395520653|ref|XP_003764440.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Sarcophilus
harrisii]
Length = 506
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+R +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 92 QRHVALRIAYLGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCG 145
Query: 117 RTDKGVSAVGQVVSGRF---------------------CIDPPGLVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S ++ LN LP IR+
Sbjct: 146 RTDKGVSAFGQVISLNLRSQLIGSKKPEDQSLKDSINDTVEEIRYTHILNRVLPPDIRVL 205
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRD 191
+ V SF+A+ C +R Y Y P LD + D
Sbjct: 206 AWAPVEPSFSARFSCLERTYRYFFPCADLDIEAMND 241
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 15/123 (12%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVV---------NVEGIDFLKCEVVGQS 402
YVG+H+F N A + +R I+S V E + EV+GQ+
Sbjct: 246 YVGTHDFRNLCKMDVANGVINFQRTILSANVQLVALRDLEEKLQQQEPFQLCQFEVIGQA 305
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYN 459
F+ HQ+R M+ + + + +I+ L + N P A E L L +C F N
Sbjct: 306 FLYHQVRCMMAILFLIGQRMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLHDCKFE--N 363
Query: 460 KKW 462
KW
Sbjct: 364 IKW 366
>gi|355567201|gb|EHH23580.1| hypothetical protein EGK_07068 [Macaca mulatta]
gi|355752776|gb|EHH56896.1| hypothetical protein EGM_06391 [Macaca fascicularis]
gi|380816966|gb|AFE80357.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
gi|383422019|gb|AFH34223.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
gi|384949702|gb|AFI38456.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
Length = 480
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 67/150 (44%), Gaps = 29/150 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 61 RRHVALRIAYMGWGYQGFASQENTN-NTIEEKLFEALSKTRLVESRQTSN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVS---------GR----FCIDPPG--------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S GR F + LN LP IRI
Sbjct: 115 RTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANATAEEIRYTHILNRVLPPDIRIL 174
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ V SF+A+ C +R Y Y P LD
Sbjct: 175 AWAPVEPSFSARFSCLERTYRYFFPRADLD 204
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCEVVGQSFM 404
YVG+H+F N A + +R I+S V G + EV GQ+F+
Sbjct: 215 YVGTHDFRNLCKMDVANGVINFQRTILSAQVRLVGQSPGEGRWQEPFQLCQFEVTGQAFL 274
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYNKK 461
HQ+R M+ + + + +I+ L + N P A E L L +C F N K
Sbjct: 275 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFE--NVK 332
Query: 462 W 462
W
Sbjct: 333 W 333
>gi|199559785|ref|NP_112597.3| tRNA pseudouridine(38/39) synthase isoform 1 [Homo sapiens]
Length = 481
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 84/195 (43%), Gaps = 41/195 (21%)
Query: 21 EPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQL----CKRRKIAIFFAYCGVGYQGM 76
E + +RLK +D ++ +AGA TKR RR +A+ AY G GYQG
Sbjct: 22 EQEVQRLKKEQAKNKEDS-NIRENSAGA-GKTKRAFDFSAHGRRHVALRIAYMGWGYQGF 79
Query: 77 --QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS---- 130
Q+N TIE L EAL + V R N + R RTDKGVSA GQV+S
Sbjct: 80 ASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCGRTDKGVSAFGQVISLDLR 133
Query: 131 GRFCIDPPG--------------------LVERLNSNLPTQIRIFGYKRVTASFNAKKFC 170
+F P G LN LP IRI + V SF+A+ C
Sbjct: 134 SQF---PRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSARFSC 190
Query: 171 DQRRYVYLLPVFALD 185
+R Y Y P LD
Sbjct: 191 LERTYRYFFPRADLD 205
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCEVVGQSFM 404
YVG+H+F N A + +R I+S V G + EV GQ+F+
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFL 275
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYNKK 461
HQ+R M+ + + + +I+ L + N P A E L L +C F N K
Sbjct: 276 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFE--NVK 333
Query: 462 W 462
W
Sbjct: 334 W 334
>gi|109109191|ref|XP_001111887.1| PREDICTED: tRNA pseudouridine synthase 3 [Macaca mulatta]
Length = 480
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 67/150 (44%), Gaps = 29/150 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 61 RRHVALRIAYMGWGYQGFASQENTN-NTIEEKLFEALSKTRLVESRQTSN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVS---------GR----FCIDPPG--------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S GR F + LN LP IRI
Sbjct: 115 RTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANATAEEIRYTHILNRVLPPDIRIL 174
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ V SF+A+ C +R Y Y P LD
Sbjct: 175 AWAPVEPSFSARFSCLERTYRYFFPRADLD 204
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCEVVGQSFM 404
YVG+H+F N A + +R I+S V G + EV GQ+F+
Sbjct: 215 YVGTHDFRNLCKMDVANGVINFQRTILSAQVRLVGQSPGEGRWQEPFQLCQFEVTGQAFL 274
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYNKK 461
HQ+R M+ + + + +I+ L + N P A E L L +C F N K
Sbjct: 275 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFE--NVK 332
Query: 462 W 462
W
Sbjct: 333 W 333
>gi|148693449|gb|EDL25396.1| pseudouridine synthase 3, isoform CRA_b [Mus musculus]
Length = 322
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 69 RRHVALKIAYLGWGYQGFASQENT-SNTIEEKLFEALTKTRLVESRQTSN-----YHRCG 122
Query: 117 RTDKGVSAVGQVVSGRFCIDPPG---------------------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S P LN LP IR+
Sbjct: 123 RTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVL 182
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALDSSS 188
+ V SF+A+ C +R Y Y P LD ++
Sbjct: 183 AWAPVEPSFSARFSCLERTYRYFFPRADLDIAT 215
>gi|345317522|ref|XP_001519338.2| PREDICTED: tRNA pseudouridine synthase 3-like [Ornithorhynchus
anatinus]
Length = 734
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 75/169 (44%), Gaps = 32/169 (18%)
Query: 43 PAAAGADSTTKRQL----CKRRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHS 96
PAA GA +R RR +A+ AY G GYQG Q+N TIE L EAL +
Sbjct: 40 PAAGGAKKRQQRPFDFGAYGRRHVALRIAYLGWGYQGFASQENTN-NTIEERLFEALTKT 98
Query: 97 GAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS-------GRFCIDPPGLVER------ 143
+ R N + R RTDKGVSA GQV+S R + G +R
Sbjct: 99 RLIERRQTAN-----YHRCGRTDKGVSAFGQVISLDLRSQTVRGGQEEEGSKDRMDARTA 153
Query: 144 -------LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
LN LP IR+ + V + F+A+ C QR Y Y P LD
Sbjct: 154 EIRYTHILNRVLPPDIRVLAWAPVGSGFSARFNCLQRTYRYFFPRADLD 202
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAED-PSARRYIISFGADSVVNVEGID----FLKC--EV 398
+R + YVG+H+F N A S +R I+S V E D F C EV
Sbjct: 206 MDRAAQKYVGTHDFRNLCKMDVANGVTSFQRTILSAQVRRVDQSEETDRRDPFRLCQFEV 265
Query: 399 VGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIF 455
GQ+F+ HQ+R M+ + V + +I+ L + N P A E+ L L +C F
Sbjct: 266 TGQAFLYHQVRCMMAILFLVGQRMEGPEVIDELLDVEKNPRKPQYSMAVELPLVLYDCQF 325
>gi|260781560|ref|XP_002585875.1| hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae]
gi|229270936|gb|EEN41886.1| hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae]
Length = 312
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 64/154 (41%), Gaps = 30/154 (19%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
R +A+ AY G Y G Q TIE L EAL + + +R N + R RT
Sbjct: 68 RHVALKVAYLGWSYDGFQSQETTDNTIEARLFEALTKTRLIEKRQSSN-----YHRCGRT 122
Query: 119 DKGVSAVGQVVSGRF---CIDPPGLVER---------------------LNSNLPTQIRI 154
DKGVSA GQV+S D G++ R LN LP IR+
Sbjct: 123 DKGVSAFGQVISLDLRTNLTDGAGVIPRPEGTANHREGDKTTEIKYVYILNKVLPPDIRV 182
Query: 155 FGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSS 188
+ V F+A+ C QR Y Y P LD S
Sbjct: 183 LAWAPVDPDFSARFSCQQRTYKYFFPKGNLDIQS 216
>gi|221632949|ref|YP_002522172.1| tRNA pseudouridine synthase A [Thermomicrobium roseum DSM 5159]
gi|221155520|gb|ACM04647.1| tRNA pseudouridine synthase A [Thermomicrobium roseum DSM 5159]
Length = 279
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
R++ + F Y G + G Q+ PG +T++G LEEAL R G P R A + RT
Sbjct: 3 RQRYRLDFGYEGTAFSGSQRQPGLRTVQGVLEEAL-------ARLAGEPVRV--ALAGRT 53
Query: 119 DKGVSAVGQVVSGRFCI--DPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
D GV AVGQV S C D L L + LP + ++ R+ A F+A++ R Y
Sbjct: 54 DAGVHAVGQVASFDLCWRHDEATLARALQAWLPEDVVVYRVARMPAGFHARRGAVDREYR 113
Query: 177 Y 177
Y
Sbjct: 114 Y 114
>gi|410972303|ref|XP_003992599.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Felis catus]
Length = 480
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVS----GRFCIDPPG-----------------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S F D LN LP IR+
Sbjct: 115 RTDKGVSAFGQVISLDLRSHFPKDRASEDCNLKDEVSDAAKEIRYTHILNRVLPPDIRVL 174
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRD 191
+ V SF+A+ C +R Y Y P LD + D
Sbjct: 175 AWAPVEPSFSARFSCLERTYRYFFPRADLDIVAMND 210
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDP--------SARRYIISFGADSVVNVEGIDFLKCE 397
N + YVG+H+F N A SA+ ++ D E + E
Sbjct: 208 MNDAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSLDKERWQEPFQLCQFE 267
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
V+GQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C
Sbjct: 268 VIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 327
Query: 455 FASYNKKW 462
F N KW
Sbjct: 328 FE--NIKW 333
>gi|301782183|ref|XP_002926505.1| PREDICTED: tRNA pseudouridine synthase 3-like [Ailuropoda
melanoleuca]
Length = 480
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 61 RRHVALKIAYMGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVS---------GRFCID------------PPGLVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S GR D LN LP IR+
Sbjct: 115 RTDKGVSAFGQVISLDLRSHFLKGRASEDFHVKDEVSDAAKEIRYTHILNRVLPPDIRVL 174
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ V SF+A+ C +R Y Y P LD
Sbjct: 175 AWAPVEPSFSARFSCLERTYRYFFPRADLD 204
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDP--------SARRYIISFGADSVVNVEGIDFLKCE 397
N + YVG+H+F N A SA+ ++ D E + E
Sbjct: 208 MNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSLDKETWQEAFQLCQFE 267
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
V GQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C
Sbjct: 268 VTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 327
Query: 455 FASYNKKW 462
F N +W
Sbjct: 328 FE--NIQW 333
>gi|365983330|ref|XP_003668498.1| hypothetical protein NDAI_0B02200 [Naumovozyma dairenensis CBS 421]
gi|343767265|emb|CCD23255.1| hypothetical protein NDAI_0B02200 [Naumovozyma dairenensis CBS 421]
Length = 439
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 72/153 (47%), Gaps = 21/153 (13%)
Query: 60 RKIAIFFAYCGVGYQG--MQKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
R IA+ FAY G Y G MQK T+EG + EA++ S V P+ Y ++R
Sbjct: 82 RFIALKFAYLGWNYNGLAMQKEATPLPTVEGKIIEAMYTSKLVPSM---VPQEYSFSRCG 138
Query: 117 RTDKGVSAVGQVVS------------GRFCIDPPGL--VERLNSNLPTQIRIFGY-KRVT 161
RTDKGVSA+ QV+S R DP + V LN LP IR+ R
Sbjct: 139 RTDKGVSAMSQVISLKVRSNLTDEEQKRPENDPREIRYVHILNQLLPDDIRVSAVCLRPP 198
Query: 162 ASFNAKKFCDQRRYVYLLPVFALDSSSHRDRES 194
F+A+ CD R Y YL LD S ++ S
Sbjct: 199 EGFDARFSCDSRHYKYLFEADGLDISKMKEASS 231
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 353 YVGSHNFHNFTTRTKAEDPS-ARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKM 411
Y G H+F NF ++ + RR IIS +++VEG + ++VG++F+ HQ+R M
Sbjct: 233 YEGDHDFRNFCKLDGSKQITNHRRTIIS---AKILHVEG-NIYCFDLVGRAFLWHQVRCM 288
Query: 412 IGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECIF 455
+ + V + SLIE L + P A ++ L L +C F
Sbjct: 289 MANLLLVGQGLEEVSLIEDMLDIEKTPQKPIYDMADDLPLLLYDCKF 335
>gi|332208632|ref|XP_003253411.1| PREDICTED: tRNA pseudouridine(38/39) synthase isoform 1 [Nomascus
leucogenys]
Length = 481
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCG 115
Query: 117 RTDKGVSAVGQVVS---------GRFCID------------PPGLVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S GR D LN LP IRI
Sbjct: 116 RTDKGVSAFGQVISLDLRSQFPRGRESEDFNVKEEANAAAEEIRYTHILNRVLPPDIRIL 175
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ V SF+A+ C +R Y Y P LD
Sbjct: 176 AWAPVEPSFSARFSCLERTYRYFFPRADLD 205
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCEVVGQSFM 404
YVG+H+F N A + +R I+S V G + EV GQ+F+
Sbjct: 216 YVGTHDFRNLCKMDVANGVVNFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFL 275
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYNKK 461
HQ+R M+ + + + LI+ L + N P A E L L +C F N K
Sbjct: 276 YHQVRCMMAILFLIGQGMEKPELIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFE--NVK 333
Query: 462 W 462
W
Sbjct: 334 W 334
>gi|281338704|gb|EFB14288.1| hypothetical protein PANDA_016156 [Ailuropoda melanoleuca]
Length = 479
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 61 RRHVALKIAYMGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVS---------GRFCID------------PPGLVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S GR D LN LP IR+
Sbjct: 115 RTDKGVSAFGQVISLDLRSHFLKGRASEDFHVKDEVSDAAKEIRYTHILNRVLPPDIRVL 174
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ V SF+A+ C +R Y Y P LD
Sbjct: 175 AWAPVEPSFSARFSCLERTYRYFFPRADLD 204
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDP--------SARRYIISFGADSVVNVEGIDFLKCE 397
N + YVG+H+F N A SA+ ++ D E + E
Sbjct: 208 MNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSLDKETWQEAFQLCQFE 267
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
V GQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C
Sbjct: 268 VTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 327
Query: 455 FASYNKKW 462
F N +W
Sbjct: 328 FE--NIQW 333
>gi|114641137|ref|XP_001148378.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pan troglodytes]
gi|410211820|gb|JAA03129.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410257886|gb|JAA16910.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410299778|gb|JAA28489.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410328501|gb|JAA33197.1| pseudouridylate synthase 3 [Pan troglodytes]
Length = 481
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 67/150 (44%), Gaps = 29/150 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCG 115
Query: 117 RTDKGVSAVGQVVS---------GR----FCIDPPG--------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S GR F + LN LP IRI
Sbjct: 116 RTDKGVSAFGQVISLDLRSHFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRIL 175
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ V SF+A+ C +R Y Y P LD
Sbjct: 176 AWAPVEPSFSARFSCLERTYRYFFPRADLD 205
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCEVVGQSFM 404
YVG+H+F N A + +R I+S V G + EV GQ+F+
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFL 275
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYNKK 461
HQ+R M+ + + + +I+ L + N P A E L L +C F N K
Sbjct: 276 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFE--NVK 333
Query: 462 W 462
W
Sbjct: 334 W 334
>gi|16550495|dbj|BAB70990.1| unnamed protein product [Homo sapiens]
Length = 481
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 67/153 (43%), Gaps = 35/153 (22%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCG 115
Query: 117 RTDKGVSAVGQVVS----GRFCIDPPG--------------------LVERLNSNLPTQI 152
RTDKGVSA GQV+S +F P G LN LP I
Sbjct: 116 RTDKGVSAFGQVISLDLRSQF---PRGRDSEDLNVKEEANAAAEEIRYTHILNRVLPPDI 172
Query: 153 RIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
RI + V SF+A+ C +R Y Y P LD
Sbjct: 173 RILAWAPVEPSFSARFSCLERTYRYFFPRADLD 205
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCEVVGQSFM 404
YVG+H+F N A + +R I+S V G + EV GQ+F+
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFL 275
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYNKK 461
HQ+R M+ + + + +I+ L + N P A E L L +C F N K
Sbjct: 276 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFE--NVK 333
Query: 462 W 462
W
Sbjct: 334 W 334
>gi|313245560|emb|CBY40253.1| unnamed protein product [Oikopleura dioica]
Length = 402
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 21/147 (14%)
Query: 55 QLCKRRKIAIFFAYCGVGYQGMQKNP---GAKTIEGDLEEALFHSGAVSERDRGNPRRYD 111
Q+ ++RKIA+ F+Y G Y G+Q++P G TIE + +A+ + V D G D
Sbjct: 60 QIFRKRKIALRFSYDGTKYNGLQRSPVPAGKTTIEDVIFDAMLRTKVVD--DIGTA---D 114
Query: 112 WARSARTDKGVSAVGQVVS-------------GRFCIDPPGLVERLNSNLPTQIRIFGYK 158
+ RTDKGV AV V+S + V +N LP I I +
Sbjct: 115 YIAGGRTDKGVHAVNNVISLFVNSRLSEDEINENVTVGERNFVAIINRQLPDDIWITSWA 174
Query: 159 RVTASFNAKKFCDQRRYVYLLPVFALD 185
++++ F+A+ C R Y Y+ LD
Sbjct: 175 QISSDFSARFNCKSRHYNYIFDSSGLD 201
>gi|14919399|gb|AAH04822.1| Pseudouridylate synthase 3 [Homo sapiens]
gi|124000287|gb|ABM87652.1| pseudouridylate synthase 3 [synthetic construct]
gi|124000289|gb|ABM87653.1| pseudouridylate synthase 3 [synthetic construct]
gi|157928602|gb|ABW03597.1| pseudouridylate synthase 3 [synthetic construct]
gi|157929242|gb|ABW03906.1| pseudouridylate synthase 3 [synthetic construct]
Length = 481
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 67/153 (43%), Gaps = 35/153 (22%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCG 115
Query: 117 RTDKGVSAVGQVVS----GRFCIDPPG--------------------LVERLNSNLPTQI 152
RTDKGVSA GQV+S +F P G LN LP I
Sbjct: 116 RTDKGVSAFGQVISLDLRSQF---PRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDI 172
Query: 153 RIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
RI + V SF+A+ C +R Y Y P LD
Sbjct: 173 RILAWAPVEPSFSARFSCLERTYRYFFPRADLD 205
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCEVVGQSFM 404
YVG+H+F N A + +R I+S V G + EV GQ+F+
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFL 275
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYNKK 461
HQ+R M+ + + + +I+ L + N P A E L L +C F N K
Sbjct: 276 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFE--NVK 333
Query: 462 W 462
W
Sbjct: 334 W 334
>gi|297690638|ref|XP_002822721.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pongo abelii]
Length = 481
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 67/153 (43%), Gaps = 35/153 (22%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCG 115
Query: 117 RTDKGVSAVGQVVS----GRFCIDPPG--------------------LVERLNSNLPTQI 152
RTDKGVSA GQV+S +F P G LN LP I
Sbjct: 116 RTDKGVSAFGQVISLDLRSQF---PRGKDSEDFNVKGEANAAAEEIRYTHILNRVLPPDI 172
Query: 153 RIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
RI + V SF+A+ C +R Y Y P LD
Sbjct: 173 RILAWAPVEPSFSARFSCLERTYRYFFPRADLD 205
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCEVVGQSFM 404
YVG+H+F N A + +R I+S V G + EV GQ+F+
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFL 275
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYNKK 461
HQ+R M+ + + + +I+ L + N P A E L L +C F N K
Sbjct: 276 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAIEFPLVLYDCKFE--NVK 333
Query: 462 W 462
W
Sbjct: 334 W 334
>gi|119588071|gb|EAW67667.1| pseudouridylate synthase 3 [Homo sapiens]
Length = 481
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 67/153 (43%), Gaps = 35/153 (22%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCG 115
Query: 117 RTDKGVSAVGQVVS----GRFCIDPPG--------------------LVERLNSNLPTQI 152
RTDKGVSA GQV+S +F P G LN LP I
Sbjct: 116 RTDKGVSAFGQVISLDLRSQF---PRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDI 172
Query: 153 RIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
RI + V SF+A+ C +R Y Y P LD
Sbjct: 173 RILAWAPVEPSFSARFSCLERTYRYFFPRADLD 205
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCEVVGQSFM 404
YVG+H+F N A + +R I+S V G + EV GQ+F+
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFL 275
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYNKK 461
HQ+R M+ + + + +I+ L + N P A E L L +C F N K
Sbjct: 276 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFE--NVK 333
Query: 462 W 462
W
Sbjct: 334 W 334
>gi|397498358|ref|XP_003819951.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pan paniscus]
Length = 481
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 67/150 (44%), Gaps = 29/150 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCG 115
Query: 117 RTDKGVSAVGQVVS---------GR----FCIDPPG--------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S GR F + LN LP IRI
Sbjct: 116 RTDKGVSAFGQVISLDLRSHFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRIL 175
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ V SF+A+ C +R Y Y P LD
Sbjct: 176 AWAPVEPSFSARFSCLERTYRYFFPRADLD 205
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCEVVGQSFM 404
YVG+H+F N A + +R I+S V G + EV GQ+F+
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFL 275
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYN 459
HQ+R M+ + + + +I+ L + N P A E L L +C F + N
Sbjct: 276 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVN 333
>gi|57085889|ref|XP_536533.1| PREDICTED: tRNA pseudouridine synthase 3 [Canis lupus familiaris]
Length = 480
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 88/212 (41%), Gaps = 39/212 (18%)
Query: 4 AETNTEKLPSPSLSPR---QEPDPKRLKMSATSTSD-DERDLIPAAAGADSTTKRQLCKR 59
AE +T++L L R E + +RLK + D + R+ A A R
Sbjct: 2 AENDTDRLQIEKLLKRVQELEEEVQRLKKEQANNKDSNARENSLGARKAKRAFDFSAHGR 61
Query: 60 RKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
R +A+ AY G GYQG Q+N TIE L +AL + V R N + R R
Sbjct: 62 RHVALKIAYLGWGYQGFASQENTN-NTIEEKLFDALTKTRLVESRQTSN-----YHRCGR 115
Query: 118 TDKGVSAVGQVVS----GRFCIDPPG--------------------LVERLNSNLPTQIR 153
TDKGVSA GQV+S F P G LN LP IR
Sbjct: 116 TDKGVSAFGQVISLDLRSHF---PEGSTSEDSNLKNEVNDVAKEIRYTHILNRVLPPDIR 172
Query: 154 IFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ + V SF+A+ C +R Y Y P LD
Sbjct: 173 VLAWAPVEPSFSARFSCLERTYRYFFPRADLD 204
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNV--------EGIDFLKCE 397
N + YVG+H+F N A + + F +V E + E
Sbjct: 208 MNYAAQKYVGTHDFRNLCKMDVANGVINFQRTVLFAQVELVGQSLDKEQWQEPFQLCQFE 267
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
VVGQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C
Sbjct: 268 VVGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 327
Query: 455 FASYNKKW 462
F N KW
Sbjct: 328 FE--NVKW 333
>gi|398022072|ref|XP_003864198.1| hypothetical protein, conserved [Leishmania donovani]
gi|322502433|emb|CBZ37516.1| hypothetical protein, conserved [Leishmania donovani]
Length = 701
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 285 VNETLVESRTSETVQNENTDLSLDLDSKNDSKVMA--EERSVNGEEKLLKGSGFCYGEEE 342
V++ V S E +Q+ SL+ D +V EE GE L+G+ E+
Sbjct: 474 VSDPFVVSPEEELLQHSINSWSLNHFYSPDERVAVTYEEWMTEGETAELQGAAASVSEQG 533
Query: 343 KKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQS 402
K++ K+ D + R + D V GI+ ++ E+ GQS
Sbjct: 534 KRQI-------------------PKSADAALRERMRQHIRD--VYAGGIEVVRIELDGQS 572
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLI-ETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FML+QIRKMIG V + P S I + L+K V +P AP GL+L F+ YN++
Sbjct: 573 FMLNQIRKMIGAVVCIAAGGLPDSYIRDVLLRKGVRRGIPMAPANGLFLSYLDFSGYNRR 632
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 50/204 (24%)
Query: 54 RQLCKRRKIAIFFAYCGVGYQGMQKN--PGAKTIEGDLEEALFHSGAVSERDRGNPR--- 108
+++ +++K+ I F Y G Y G+Q N P T+E L +ALF + +SE + N +
Sbjct: 50 KRVRRKQKVGIIFGYVGECYCGLQWNHLPEYPTVEEALMKALFETDMISEVNFSNVKVQQ 109
Query: 109 RYDWARSARTDKGVSAVGQVVSGRFCI--DPPGLVER----------------------- 143
++ R++RTDKGV A+ VVS + DP +R
Sbjct: 110 LLNFERASRTDKGVHALRNVVSVAVMLPYDPSYTKKRVAALQEHAEGAAAGEVYNADGDV 169
Query: 144 --------------------LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
LN LP I ++ VT SFNA C RRY Y LP FA
Sbjct: 170 EDDANSAQAAVFSCDEAKRLLNEALPRDIHVYAVVPVTRSFNAYLNCGGRRYEYYLPTFA 229
Query: 184 LDSSSHRDRESVMASLGSGNELVK 207
L +++ + A L +K
Sbjct: 230 LMTAAEYTKTYFPAFLAPSKPTLK 253
>gi|146098588|ref|XP_001468420.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134072788|emb|CAM71504.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 701
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 285 VNETLVESRTSETVQNENTDLSLDLDSKNDSKVMA--EERSVNGEEKLLKGSGFCYGEEE 342
V++ V S E +Q+ SL+ D +V EE GE L+G+ E+
Sbjct: 474 VSDPFVVSPEEELLQHSINSWSLNHFYSPDERVAVTYEEWMTEGETAELQGAAASVSEQG 533
Query: 343 KKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQS 402
K++ K+ D + R + D V GI+ ++ E+ GQS
Sbjct: 534 KRQI-------------------PKSADAALRERMRQHIRD--VYAGGIEVVRIELDGQS 572
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLI-ETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FML+QIRKMIG V + P S I + L+K V +P AP GL+L F+ YN++
Sbjct: 573 FMLNQIRKMIGAVVCIAAGGLPDSYIRDVLLRKGVRRGIPMAPANGLFLSYLDFSGYNRR 632
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 50/204 (24%)
Query: 54 RQLCKRRKIAIFFAYCGVGYQGMQKN--PGAKTIEGDLEEALFHSGAVSERDRGNPR--- 108
+++ +++K+ I F Y G Y G+Q N P T+E L +ALF + +SE + N +
Sbjct: 50 KRVRRKQKVGIIFGYVGECYCGLQWNHLPEYPTVEEALMKALFETDMISEVNFSNVKVQQ 109
Query: 109 RYDWARSARTDKGVSAVGQVVSGRFCI--DPPGLVER----------------------- 143
++ R++RTDKGV A+ VVS + DP +R
Sbjct: 110 LLNFERASRTDKGVHALRNVVSVAVMLPYDPSYTKKRVAALQEHAEGAAAGEVYNADGDV 169
Query: 144 --------------------LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
LN LP I ++ VT SFNA C RRY Y LP FA
Sbjct: 170 EDDANSAQAAVFSCDEAKRLLNEALPRDIHVYAVVPVTRSFNAYLNCGGRRYEYYLPTFA 229
Query: 184 LDSSSHRDRESVMASLGSGNELVK 207
L +++ + A L +K
Sbjct: 230 LMTAAEYTKTYFPAFLAPSKPTLK 253
>gi|154334040|ref|XP_001563275.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134060287|emb|CAM45698.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 764
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 83/201 (41%), Gaps = 47/201 (23%)
Query: 54 RQLCKRRKIAIFFAYCGVGYQGMQKN--PGAKTIEGDLEEALFHSGAVSERDRGN---PR 108
+++ +++K+ I F Y G Y G+Q N P T+E L +ALF + +SE + N +
Sbjct: 116 KRIRRKQKVGIIFGYVGECYCGLQWNHLPEYPTVEEALMKALFETDMISEVNFANFKVQQ 175
Query: 109 RYDWARSARTDKGVSAVGQVVSGRFCI--DPPGLVER----------------------- 143
++ R++RTDKGV A+ VVS + DP R
Sbjct: 176 LLNFERASRTDKGVHALRNVVSVAVMLPYDPAYAKRRLAAMQEHTKGTAAGETHNVDGDS 235
Query: 144 -----------------LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDS 186
LN LP + ++G VT SFNA C RRY Y LP F+L +
Sbjct: 236 EEDANDAIFSCEEAKRLLNKALPRDLHVYGVVPVTRSFNAYLNCGGRRYEYYLPTFSLMT 295
Query: 187 SSHRDRESVMASLGSGNELVK 207
+ SL +K
Sbjct: 296 EEEYSKTYFPTSLAPSQPTLK 316
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 386 VNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLI-ETALQKDVNINVPTAP 444
V GI+ ++ E+ GQSFML+QIRKMIG V + P + I + L+K V +P P
Sbjct: 619 VYAGGIEVVRIELDGQSFMLNQIRKMIGAVVCIAAAGLPLNHIRDVLLRKGVRRGIPMVP 678
Query: 445 EVGLYLDECIFASYNKKWK 463
GL+L F+ YN++ K
Sbjct: 679 ANGLFLSYLDFSGYNRRLK 697
>gi|406694963|gb|EKC98278.1| pseudouridylate synthase [Trichosporon asahii var. asahii CBS 8904]
Length = 220
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 59 RRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+++ A+ YCG GY GMQ + G+KTIEGDL EAL +GA+S + + ++ D R+AR
Sbjct: 150 KKRAAVLLGYCGTGYSGMQIQTHGSKTIEGDLFEALAKAGAISPENATDHKKVDIQRAAR 209
Query: 118 TDKGVSAVG 126
TD GV A G
Sbjct: 210 TDAGVHAAG 218
>gi|448668269|ref|ZP_21686400.1| tRNA pseudouridine synthase A [Haloarcula amylolytica JCM 13557]
gi|445768351|gb|EMA19436.1| tRNA pseudouridine synthase A [Haloarcula amylolytica JCM 13557]
Length = 275
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G Y G Q+ P T+EG L AL G V ER G P RY A + RTD GVSA
Sbjct: 7 AYDGRPYHGFQRQPDVDTVEGRLRSALVRLG-VCERGDGLPERY--AAAGRTDAGVSARA 63
Query: 127 QVVSGRFCIDPPGLVE--RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
Q V+ D P + N LP IR++ V F+A +R Y Y L
Sbjct: 64 QTVA----FDAPAWLSPAAFNGELPDDIRVWASADVPDGFHATHDAAERTYTYYL 114
>gi|348508841|ref|XP_003441961.1| PREDICTED: tRNA pseudouridine synthase 3-like [Oreochromis
niloticus]
Length = 467
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 69/155 (44%), Gaps = 34/155 (21%)
Query: 59 RRKIAIFFAYCGVGYQG--MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G YQG +Q+N T+E L EAL + + +R N + R
Sbjct: 73 RRHVALRLAYLGWAYQGFAVQENTD-NTVEARLFEALLKTRLIQDRQSSN-----YHRCG 126
Query: 117 RTDKGVSAVGQVV-----SGRFC----IDPP-----------------GLVERLNSNLPT 150
RTDKGVSA QV+ S +FC I P V+ LN LP
Sbjct: 127 RTDKGVSAFSQVITIDLRSTQFCAGLGITLPENVDVSTKATSSATSELPYVKMLNRVLPQ 186
Query: 151 QIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
IR+ + V F+A+ C R Y Y P +LD
Sbjct: 187 DIRVLDWAPVAEGFSARFDCQSRTYRYYFPRGSLD 221
>gi|417401673|gb|JAA47712.1| Putative pseudouridylate synthase [Desmodus rotundus]
Length = 480
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQENT-SNTIEEKLFEALTKTRLVESRQTAN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVS----GRFCIDPPG-----------------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S F D LN LP IR+
Sbjct: 115 RTDKGVSAFGQVISLDLRSYFPKDRDSEDLNIKDGVGDAAKEIRYTHILNRVLPADIRVL 174
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ V SF+A+ C +R Y Y P LD
Sbjct: 175 AWAPVEPSFSARFSCLERTYRYFFPRADLD 204
>gi|401887158|gb|EJT51162.1| pseudouridylate synthase [Trichosporon asahii var. asahii CBS 2479]
Length = 202
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 59 RRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+++ A+ YCG GY GMQ + G+KTIEGDL EAL +GA+S + + ++ D R+AR
Sbjct: 132 KKRAAVLLGYCGTGYSGMQIQTHGSKTIEGDLFEALAKAGAISPENATDHKKVDIQRAAR 191
Query: 118 TDKGVSAVG 126
TD GV A G
Sbjct: 192 TDAGVHAAG 200
>gi|354481125|ref|XP_003502753.1| PREDICTED: tRNA pseudouridine synthase 3 [Cricetulus griseus]
gi|344255032|gb|EGW11136.1| tRNA pseudouridine synthase 3 [Cricetulus griseus]
Length = 480
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQENT-SNTIEEKLFEALTKTRLVESRQTSN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVS---------GRFCIDPP------------GLVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S GR D LN LP IR+
Sbjct: 115 RTDKGVSAFGQVISLDLRSQFPRGRDSDDSDLKDEADDVAKEIRYTHILNRVLPADIRVL 174
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ V F+A+ C +R Y Y P LD
Sbjct: 175 AWAPVEPGFSARFNCLERTYRYFFPRADLD 204
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 13/133 (9%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDP--------SARRYIISFGADSVVNVEGIDFLKCE 397
N + YVG+H+F N A SA+ ++++ E + E
Sbjct: 208 MNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVTWSLGEERRQEPFQLCQFE 267
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
V+GQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C
Sbjct: 268 VIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 327
Query: 455 FASYNKKWKDSHE 467
F N KW HE
Sbjct: 328 FE--NTKWIYDHE 338
>gi|84489200|ref|YP_447432.1| tRNA pseudouridine synthase A [Methanosphaera stadtmanae DSM 3091]
gi|121725515|sp|Q2NHB4.1|TRUA_METST RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|84372519|gb|ABC56789.1| TruA [Methanosphaera stadtmanae DSM 3091]
Length = 274
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R++A+ AY G + G Q+ P +T+EG+L + + + + ++ + RTD
Sbjct: 2 RRVALKIAYIGSNFHGYQRQPNYRTVEGELLRVFKETNIIEDTWTAH-----YSVAGRTD 56
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
KGV + G V+S F D + +LN LP I+I G RV F +F R Y Y+
Sbjct: 57 KGVHSTGNVIS--FITDEDIHINQLNGLLPDDIKIIGEARVPYGFKV-RFPLTRTYTYIQ 113
Query: 180 PV 181
P+
Sbjct: 114 PI 115
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 350 LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIR 409
++ ++G HNF NF+ R + ++P+ + ++ D D L +VG+SF+ + +R
Sbjct: 132 MESFIGKHNFRNFSKRNE-KNPNRKIIDVNLEVDE-------DVLIFTIVGESFLWNMVR 183
Query: 410 KMIGLAVAVVRNCAPQSLIETALQ-KDVN--INVPTAPEVGLYLDECIFASYNKKWKDS 465
KM+ + V + I L+ K++ I + AP GL L + + N K+KDS
Sbjct: 184 KMVTSIMEVGYGKLDINDINELLKPKELRQFIRLQPAPANGLILSDMEYK--NIKFKDS 240
>gi|327282044|ref|XP_003225754.1| PREDICTED: tRNA pseudouridine synthase 3-like [Anolis carolinensis]
Length = 455
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 65/148 (43%), Gaps = 27/148 (18%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G YQG Q+N TIE L EAL + V R N + R
Sbjct: 63 RRHVALKIAYLGWEYQGFASQENTN-NTIEEKLFEALGKTRLVKNRQTSN-----YHRCG 116
Query: 117 RTDKGVSAVGQVVS----GRFCIDPPG---------------LVERLNSNLPTQIRIFGY 157
RTDKGVSA GQV+S + PG LN LP IR+ +
Sbjct: 117 RTDKGVSAFGQVISLDLRSNLPENKPGDTATNKATKASEEIHYTHILNQVLPPDIRVLAW 176
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFALD 185
V +F+A+ C +R Y Y P LD
Sbjct: 177 APVEPNFSARFNCLKRTYRYFFPCATLD 204
>gi|291383625|ref|XP_002708689.1| PREDICTED: CG3045-like [Oryctolagus cuniculus]
Length = 480
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 63/150 (42%), Gaps = 29/150 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V R N + R
Sbjct: 61 RRHVALRIAYLGWGYQGFASQENT-TNTIEEKLFEALTKTRLVESRQTSN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVSGRFCIDPPG---------------------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S P LN LP IRI
Sbjct: 115 RTDKGVSAFGQVISLDLRSQFPMAKDSESCNSKDEANDVAEEIRYTHILNRVLPPDIRIL 174
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ V F+A+ C +R Y Y P LD
Sbjct: 175 AWAPVDPGFSARFSCLERTYHYFFPRADLD 204
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCEVVGQSFM 404
YVG+H+F N A + +R I+S V G + EV GQ+F+
Sbjct: 215 YVGTHDFRNLCKMDVANGVINFQRTILSAKVQLVGQSLGEERWQEHFQLCQFEVTGQAFL 274
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYNKK 461
HQ+R M+ + + + +I+ L + N P A E L L +C F N K
Sbjct: 275 YHQVRCMMAILFLIGQGMEKPDIIDELLNVEKNPQKPQYSMAVEFPLVLHDCKFE--NIK 332
Query: 462 W 462
W
Sbjct: 333 W 333
>gi|407853622|gb|EKG06525.1| pseudouridylate synthase I, putative [Trypanosoma cruzi]
Length = 626
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 20/133 (15%)
Query: 68 YCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNPRR--YDWARSARTDKGV 122
YCG GY+G+Q P T+EG L +A+ G + +RG + + +ARS RTD+GV
Sbjct: 2 YCGTGYRGLQLQTHAPTHHTVEGVLIQAMKDVGLIEAIERGRVKGDVHHFARSCRTDRGV 61
Query: 123 SAVGQVVSGRFC-------IDPPG----LVERLNSNLPTQIRIFGYKRVTASFNAKKFCD 171
AV ++ C I+ G + E LN+ LP IR+ + +F + C+
Sbjct: 62 HAVRNLI----CLFVFTERIEALGGCEKIKEMLNTTLPLTIRVARVTPLMGNFIPRFSCN 117
Query: 172 QRRYVYLLPVFAL 184
+R Y YL+PV+A
Sbjct: 118 RRVYHYLIPVYAF 130
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 391 IDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
+ FL ++ G SF+ + IRK++G +AV+R A ++L AL D + P AP LYL
Sbjct: 296 LPFLVFQIEGNSFLFNMIRKIVGTLIAVLRG-ARETLFAEALSPDRRVVCPLAPGPYLYL 354
Query: 451 DECIFASYN 459
+ Y+
Sbjct: 355 FLSTYRRYD 363
>gi|328772887|gb|EGF82924.1| hypothetical protein BATDEDRAFT_33866 [Batrachochytrium
dendrobatidis JAM81]
Length = 580
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 335 GFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFL 394
G+ + +K IL + G+HN+HN+ DP II+ EG++++
Sbjct: 365 GYRMSQSQKVSLCNILSLFNGTHNWHNYIPGADQSDPRCYIRIINIDVRDTELHEGMEWV 424
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454
+ ++ +F +Q+R+M+ L + V+R P S++ + + +P AP + L LDE
Sbjct: 425 RIKIQAPAFARYQVRRMMALVIMVLRTNTPHSVVANSY-GFAKMEIPEAPALSLVLDEPH 483
Query: 455 FASYN 459
+ +YN
Sbjct: 484 YNNYN 488
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++AI + Y G G+ +++ G TIEG L A G + +R++ T+
Sbjct: 24 RLAILYGYNGTGFDALERTKGEVTIEGTLLAV----LASLLSADGKATFTNISRASTTEA 79
Query: 121 GVSAVGQVVSGRFCIDPPGL---VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
G A QVVS P + VE +N LP+ +R+F V + F+A++ C+ R Y +
Sbjct: 80 GEHASKQVVSFETHAPTPIILPAVEAVNKLLPSSMRVFRIIPVASDFSARRTCEARTYEF 139
Query: 178 LLPVFAL 184
L+P +A
Sbjct: 140 LIPTYAF 146
>gi|429964914|gb|ELA46912.1| tRNA pseudouridine synthase A [Vavraia culicis 'floridensis']
Length = 405
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 17/136 (12%)
Query: 342 EKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQ 401
+K+ + I YVG+ ++HNFT + + R I S ++ + ++ GQ
Sbjct: 224 DKETLSSIFDLYVGTKDYHNFTLVSNKR--GSARLIKSIEVREAAGTS--EWYEIKISGQ 279
Query: 402 SFMLHQIRKMIGLAVAVV------RNCAP-----QSLIETALQKDVNINVPTAPEVGLYL 450
SFM+HQIRKMIG + +V R AP Q + A + +N+P AP L+L
Sbjct: 280 SFMMHQIRKMIGFVLLIVNYHGKDRGTAPALEIVQKIFALAFSPRL-LNIPKAPAHPLFL 338
Query: 451 DECIFASYNKKWKDSH 466
D +F +YN+++ D H
Sbjct: 339 DTPVFHNYNERY-DRH 353
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 63/175 (36%), Gaps = 49/175 (28%)
Query: 59 RRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+ K+AI AY G + G+Q + G TIE L L + + +P++ R+ R
Sbjct: 47 KSKVAILVAYTGTPFHGLQYQRTGVPTIEQTLINGLVEMNLIKRINSTDPKKMHLQRACR 106
Query: 118 TDKGVSAVGQVVS---GRFCID------------PPGLV------------------ERL 144
TDKGV A V+ R C D G+V ER
Sbjct: 107 TDKGVHAAFNVIVVNLERGCYDEFIRRFDRLSAGTIGVVNDERNDERNGERNGERNGERN 166
Query: 145 NSN---------------LPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
N L I ++ RV SFN K D R Y YL+P L
Sbjct: 167 GDNMDIPKENSISNTSLALAHHIHVYDVVRVPKSFNPKNRTDYRIYNYLVPKHML 221
>gi|348573933|ref|XP_003472745.1| PREDICTED: tRNA pseudouridine synthase 3-like [Cavia porcellus]
Length = 480
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 69/153 (45%), Gaps = 35/153 (22%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR++A+ AY G GYQG Q+N TIE L EA+ + + R + + R
Sbjct: 62 RRRVALRIAYLGWGYQGFASQENTD-NTIEEKLFEAMTKTRLIESRQTSS-----YHRCG 115
Query: 117 RTDKGVSAVGQVVS----GRFCIDPPG--------------------LVERLNSNLPTQI 152
RTDKGVSA GQV+S +F P G LN LP I
Sbjct: 116 RTDKGVSAFGQVISLDLRSQF---PRGKDSEDLNLKNEVSDDAKEIRYTHILNRVLPPDI 172
Query: 153 RIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
R+ + V SF+A+ C +R Y Y P+ LD
Sbjct: 173 RVLAWAPVEPSFSARFSCLERTYRYFFPLADLD 205
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNV-------EGIDFLKC 396
R N + YVG+H+F N A + +R I+S V E +
Sbjct: 208 RMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAEVRLVGQSLCAESWQEPFQLCQF 267
Query: 397 EVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDEC 453
EV GQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C
Sbjct: 268 EVTGQAFLYHQVRCMMAVLFLIGQGMEEPQVIDELLNIEKNPQKPQYSMAVEFPLVLYDC 327
Query: 454 IFASYNKKWKDSHE 467
F N KW HE
Sbjct: 328 KFE--NIKWIYDHE 339
>gi|431904392|gb|ELK09777.1| tRNA pseudouridine synthase 3 [Pteropus alecto]
Length = 481
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 66/153 (43%), Gaps = 35/153 (22%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + + R N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQENTN-NTIEEKLFEALTKTRLIESRQTSN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVS----GRFCIDPPG--------------------LVERLNSNLPTQI 152
RTDKGVSA GQV+S F P G LN LP I
Sbjct: 115 RTDKGVSAFGQVISLDLRSHF---PKGRDSEDFNLTDEVNDAAKEIRYTHILNRVLPPDI 171
Query: 153 RIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
R+ + V SF+A+ C +R Y Y P LD
Sbjct: 172 RVLAWASVEPSFSARFSCLERTYRYFFPRADLD 204
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 16/131 (12%)
Query: 351 KHYVGSHNFHNFTTRTKAEDP--------SARRYIISFGADSVVNVEGIDFLKCEVVGQS 402
+ YVG+H+F N A SA+ ++ G E + EV GQ+
Sbjct: 213 QKYVGTHDFRNLCKMDVANGVINFHRTILSAQVQLVGQGLAEERWQEPFQICQFEVTGQA 272
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYN 459
F+ HQ+R M+ + + + +I+ L + N P A E L L +C F N
Sbjct: 273 FLYHQVRCMMAILFLIGQGMEKPEIIDELLNVEKNPQKPQYSMAVEFPLVLYDCKFE--N 330
Query: 460 KKW---KDSHE 467
KW ++ HE
Sbjct: 331 IKWIYDREVHE 341
>gi|157875459|ref|XP_001686121.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68129195|emb|CAJ07732.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 701
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 285 VNETLVESRTSETVQNENTDLSLDLDSKNDSKVMA--EERSVNGEEKLLKGSGFCYGEEE 342
V++ V S E +Q+ SL+ D +V A EE GE L+G+ E
Sbjct: 474 VSDPFVVSPEEELLQHSIDSWSLNHFYSPDERVAATYEEWMTEGEAAELQGAAVSVSEHG 533
Query: 343 KKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQS 402
K + K+ D + R + D V GI+ ++ E+ GQS
Sbjct: 534 KLQI-------------------PKSADAALRERMRQHIRD--VYAGGIEVVRIELDGQS 572
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLI-ETALQKDVNINVPTAPEVGLYLDECIFASYNKK 461
FML+QIRKMIG V + P S I + L+K V +P AP GL+L F+ YN++
Sbjct: 573 FMLNQIRKMIGAVVCIAAAGLPGSYIRDVLLRKGVRRGIPMAPANGLFLSYLDFSGYNRR 632
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 80/185 (43%), Gaps = 50/185 (27%)
Query: 54 RQLCKRRKIAIFFAYCGVGYQGMQKN--PGAKTIEGDLEEALFHSGAVSERDRGNPR--- 108
+++ +++K+ I F Y G Y G+Q N P T+E L +ALF + +SE + N +
Sbjct: 50 KRVRRKQKVGIIFGYVGECYCGLQWNHLPEYPTVEEALMKALFETDMISEVNFSNVKVQQ 109
Query: 109 RYDWARSARTDKGVSAVGQVVSGRFCI--DPPGLVER----------------------- 143
++ R++RTDKGV A+ VVS + DP +R
Sbjct: 110 LLNFERASRTDKGVHALRNVVSVAVMLPYDPSYTKKRVAVLQEHAEGAAAGEVYNADGDV 169
Query: 144 --------------------LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
LN LP I ++ VT SFNA C RRY Y LP FA
Sbjct: 170 EDDANSAQTAVFSCEEAKRLLNEALPRDIHVYAVVPVTRSFNAYLNCGGRRYEYYLPTFA 229
Query: 184 LDSSS 188
L +++
Sbjct: 230 LMTAA 234
>gi|55379749|ref|YP_137599.1| tRNA pseudouridine synthase A [Haloarcula marismortui ATCC 43049]
gi|62901222|sp|Q5UXW0.1|TRUA_HALMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|55232474|gb|AAV47893.1| tRNA pseudouridine synthase A [Haloarcula marismortui ATCC 43049]
Length = 275
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G Y G Q+ P T+EG L AL G V ER G P RY A + RTD GVSA
Sbjct: 7 AYDGQPYHGFQRQPDVDTVEGRLRSALVRLG-VCERGEGLPDRY--AAAGRTDAGVSART 63
Query: 127 QVVSGRFCIDPPGLVE--RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
Q V+ D P + N LP +R++ V F+A +R Y Y L
Sbjct: 64 QTVA----FDAPAWLSPAAFNGELPNDVRVWASADVPEDFHATHDAAERTYTYYL 114
>gi|340054494|emb|CCC48791.1| putative pseudouridylate synthase I, fragment, partial [Trypanosoma
vivax Y486]
Length = 525
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 20/152 (13%)
Query: 52 TKRQLCKRRK------IAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVS-- 100
+ R+ C R+ I + YCG Y+G+Q P T+EG L +AL G V
Sbjct: 8 SNRRACLRKAPAGHSLIGLCVFYCGTAYRGLQIQTHAPTHHTVEGVLIQALRDIGVVESL 67
Query: 101 ERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFC----IDPPG----LVERLNSNLPTQI 152
E R + ARS RTD+GV AV VVS F I+ G + + +N++LP +
Sbjct: 68 ENGRIGGSAHHLARSCRTDRGVHAVRNVVS-LFVRNEKIEAVGGCENITDLMNASLPNTV 126
Query: 153 RIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
R+ + +F + C++R Y Y++P +AL
Sbjct: 127 RVARVTHLMGNFIPRFCCNRRVYRYMIPAYAL 158
>gi|383320001|ref|YP_005380842.1| tRNA pseudouridylate synthase I [Methanocella conradii HZ254]
gi|379321371|gb|AFD00324.1| tRNA pseudouridylate synthase I [Methanocella conradii HZ254]
Length = 269
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
K A+ AY G + G Q PG +T+EG+L++ L G + ER R + S RTD
Sbjct: 4 KPALKLAYIGTDFSGSQAQPGKRTVEGELKKGLIEKGIIDERTRVS-------FSGRTDA 56
Query: 121 GVSAVGQVVSGRFCIDPPGLVERL------NSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
GV A+GQVVS + L ERL NS +P + ++ V F+ ++ R
Sbjct: 57 GVHALGQVVSFK------ALDERLVEPRIINSVMPKDLWVYASASVPDDFDPRRDATSRT 110
Query: 175 YVYLL 179
Y Y+L
Sbjct: 111 YRYVL 115
>gi|401428267|ref|XP_003878616.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494865|emb|CBZ30168.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 700
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 85/204 (41%), Gaps = 50/204 (24%)
Query: 54 RQLCKRRKIAIFFAYCGVGYQGMQKN--PGAKTIEGDLEEALFHSGAVSERDRGN---PR 108
+++ +++K+ I F Y G Y G+Q N P T+E L +ALF + +SE + N +
Sbjct: 50 KRVRRKQKVGIIFGYVGECYCGLQWNHLPEYPTVEEVLMKALFETDMISEVNFSNLKVQK 109
Query: 109 RYDWARSARTDKGVSAVGQVVSGRFCI--DPP-------------------------GLV 141
++ R++RTDKGV A+ VVS + DP G V
Sbjct: 110 LLNFERASRTDKGVHALRNVVSVAVMLPYDPSYTKKHLAALQEHAEGAAAGEVHTADGDV 169
Query: 142 E------------------RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183
E LN LP I ++ VT SFNA C RRY Y LP FA
Sbjct: 170 EDDANSAQAAVFSCEEAKRLLNEALPRDIHVYAVVPVTRSFNAYLNCGGRRYEYYLPTFA 229
Query: 184 LDSSSHRDRESVMASLGSGNELVK 207
L +++ SL +K
Sbjct: 230 LMTAAEYSETYFPTSLAPSQPTLK 253
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 386 VNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLI-ETALQKDVNINVPTAP 444
V GI+ ++ E+ GQSFML+QIRKMIG V V P++ I + L+K V +P AP
Sbjct: 555 VYAGGIEVVRIELDGQSFMLNQIRKMIGAVVCVAAAGLPETYIRDVLLRKAVRRGIPMAP 614
Query: 445 EVGLYLDECIFASYNKK 461
GL+L F+ YN++
Sbjct: 615 ANGLFLSYLDFSGYNRR 631
>gi|170097145|ref|XP_001879792.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645195|gb|EDR09443.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 446
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
RRKIA+ F+Y G Y G+ G T+EG L +AL + + + W +
Sbjct: 49 RRKIALKFSYSGWEYGGLAFQLGPTPLPTVEGVLFDALAKARLIDQE--AGFEGCGWEKC 106
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGL----VERLNSNLPTQIRIFGYKRVTASFNAKKFCD 171
RTD+GVSA GQVVS P + LN LP IR+ + V F+A+ C
Sbjct: 107 GRTDRGVSAAGQVVSLWATTSKPTFEHDYLSILNRLLPDTIRVLAWSPVAPKFSARFSCL 166
Query: 172 QRRYVYLLPVFALD 185
R Y Y LD
Sbjct: 167 YRHYKYFFSPLGLD 180
>gi|448641429|ref|ZP_21678039.1| tRNA pseudouridine synthase A [Haloarcula sinaiiensis ATCC 33800]
gi|445760843|gb|EMA12099.1| tRNA pseudouridine synthase A [Haloarcula sinaiiensis ATCC 33800]
Length = 275
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G Y G Q+ P T+EG L AL G V ER G P RY A + RTD GVSA
Sbjct: 7 AYDGQPYHGFQRQPDVDTVEGRLRSALVRLG-VCERGEGLPDRY--AAAGRTDAGVSART 63
Query: 127 QVVSGRFCIDPPGLVE--RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
Q V+ D P + N LP +R++ V F+A +R Y Y L
Sbjct: 64 QTVA----FDAPAWLSPAAFNGELPNDVRVWASADVPEDFHATHDAAERTYTYYL 114
>gi|336379040|gb|EGO20196.1| hypothetical protein SERLADRAFT_363593 [Serpula lacrymans var.
lacrymans S7.9]
Length = 444
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 70/146 (47%), Gaps = 24/146 (16%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGA---VSERDRGNPRRYD---W 112
RRKIA+ F Y G Y G+ G + +EE LF++ A + + D+G D W
Sbjct: 57 RRKIAVKFCYSGWEYNGLAFQNGPTPLP-TVEEVLFNAFAKTRLVDPDKG----LDGCGW 111
Query: 113 ARSARTDKGVSAVGQVVS--GRFCIDPPGL-----------VERLNSNLPTQIRIFGYKR 159
R RTD+GVSA GQVVS R +D L V LN LP IR+ +
Sbjct: 112 ERCGRTDRGVSAAGQVVSLWVRSALDENRLKDAETRSELRYVSILNRVLPPTIRVLAWSP 171
Query: 160 VTASFNAKKFCDQRRYVYLLPVFALD 185
++++F+A+ C R Y Y LD
Sbjct: 172 ISSTFSARFNCQSRHYKYFFSPQELD 197
>gi|448654693|ref|ZP_21681619.1| tRNA pseudouridine synthase A [Haloarcula californiae ATCC 33799]
gi|445766541|gb|EMA17668.1| tRNA pseudouridine synthase A [Haloarcula californiae ATCC 33799]
Length = 275
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G Y G Q+ P T+EG L AL G V ER G P RY A + RTD GVSA
Sbjct: 7 AYDGQPYHGFQRQPDVDTVEGRLRSALVRLG-VCERGEGLPDRY--AAAGRTDAGVSART 63
Query: 127 QVVSGRFCIDPPGLVE--RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
Q V+ D P + N LP +R++ V F+A +R Y Y L
Sbjct: 64 QTVA----FDAPAWLSPAAFNGELPNDVRVWASADVPEDFHATHDAAERTYTYYL 114
>gi|224083654|ref|XP_002193509.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Taeniopygia guttata]
Length = 462
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 65/146 (44%), Gaps = 25/146 (17%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N TIE L EAL + V +R N + R
Sbjct: 65 RRHVALRIAYLGWGYQGFASQEN-TPNTIEEKLFEALKKTRLVDDRQTSN-----YHRCG 118
Query: 117 RTDKGVSAVGQVVSGRFCIDPP-----------GLVERL------NSNLPTQIRIFGYKR 159
RTDKGVSA GQV+S P G E L N LP IR+ +
Sbjct: 119 RTDKGVSAFGQVISLDLRSSLPEGQQLNGHGGEGQQEELRYTHILNRVLPPDIRVLAWAP 178
Query: 160 VTASFNAKKFCDQRRYVYLLPVFALD 185
V F+A+ C R Y Y P LD
Sbjct: 179 VGPEFSARFSCLSRTYRYFFPCAQLD 204
>gi|449664207|ref|XP_002153998.2| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Hydra
magnipapillata]
Length = 426
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 61 KIAIFFAYCGVGYQGM-QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
+IA+ F Y G YQG+ + TIE + A+ + + +R ++R RTD
Sbjct: 80 RIALKFLYLGWDYQGLANQETTNNTIEDAIFNAMIKAKLIEDRVLCK-----YSRCGRTD 134
Query: 120 KGVSAVGQVVSGRF-----------CIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
KGVSA GQV++ + V LN LP +IR+ + RV F+A+
Sbjct: 135 KGVSAFGQVIALNVRSNTLVSEEEDTREEISYVRLLNKILPPEIRMLAFARVPQDFDARF 194
Query: 169 FCDQRRYVYLLPVFALD 185
CD R Y Y P +D
Sbjct: 195 DCDTRMYKYFFPAKRMD 211
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 353 YVGSHNFHNFTTRTKAEDPSAR-RYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKM 411
+VG +F NF + + R I+SF + NV+ +D + E+ G +F+ HQ+R M
Sbjct: 222 FVGEKDFRNFCKVDVGNNVNHFIRNIVSFKVQMLNNVDLVDICEMEITGLAFLWHQVRCM 281
Query: 412 IGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIF 455
+ + + + +I+ L + P A E+ L L +C +
Sbjct: 282 VAVLLLIGLGVEKPEIIDHLLDVESCPKRPQYELASEIPLVLYDCTY 328
>gi|384496190|gb|EIE86681.1| hypothetical protein RO3G_11392 [Rhizopus delemar RA 99-880]
Length = 450
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 66/139 (47%), Gaps = 22/139 (15%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPG-AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+RKIA+ AY G Y G Q++P TIE L +AL V+E D D+ R
Sbjct: 58 KRKIALRVAYIGWNYIGFASQQDPERIPTIEDMLFKALKECKLVAEIDDS----IDYTRC 113
Query: 116 ARTDKGVSAVGQVV-----SGRFCIDP-PGL---------VERLNSNLPTQIRIFGYKRV 160
RTD+GVS +GQV+ S + DP P L V+ LN LP IR+ + V
Sbjct: 114 GRTDRGVSGLGQVIALWVRSKKLTSDPSPDLLPAEQEFPYVDTLNRMLPPDIRVLAWAPV 173
Query: 161 TASFNAKKFCDQRRYVYLL 179
F+A+ C R Y Y
Sbjct: 174 PEDFSARYHCTSRTYKYFF 192
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAED-PSARRYIISFGADSVVNVE----- 389
F G+ + ++ + K++ G H+F NF A++ S R+I+S V + +
Sbjct: 192 FSRGKMDIEKMRQGCKYFEGEHDFRNFCKMDPAKNIQSYDRHILSMTVRPVDHTQTAHIG 251
Query: 390 -GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKD---VNINVPTAPE 445
G DF + E+ G +F+ HQ+R M+ + V + P I L + + P A +
Sbjct: 252 DGTDFYEVELKGTAFLWHQVRYMMSVLFLVGQGLEPPETIRDVLDIEKVPSKPDFPMASD 311
Query: 446 VGLYLDECIF 455
+ L L +C F
Sbjct: 312 LPLVLYDCEF 321
>gi|410895609|ref|XP_003961292.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Takifugu
rubripes]
Length = 447
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 68/154 (44%), Gaps = 33/154 (21%)
Query: 59 RRKIAIFFAYCGVGYQG--MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G YQG +Q+N G T+E L EAL + + +R N + R
Sbjct: 70 RRHVALRLAYLGWSYQGFAVQENTG-HTVEARLFEALQKTCLIQDRQTSN-----YHRCG 123
Query: 117 RTDKGVSAVGQVV-----SGRFC--------------------IDPPGLVERLNSNLPTQ 151
RTDKGVSA QV+ S +FC + V+ LN LP
Sbjct: 124 RTDKGVSAFSQVITIDLRSTQFCGGLGVRLPETVDAGAKTKAAVSELPYVKMLNRVLPQD 183
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
IRI + F+A+ C R Y Y P AL+
Sbjct: 184 IRILDWAPAEEGFSARFDCQSRTYRYYFPRGALN 217
>gi|435850369|ref|YP_007311955.1| pseudouridylate synthase I [Methanomethylovorans hollandica DSM
15978]
gi|433660999|gb|AGB48425.1| pseudouridylate synthase I [Methanomethylovorans hollandica DSM
15978]
Length = 269
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++A+ AY G GY G Q TIEG+L AL + +P+ + S RTD
Sbjct: 2 RVALKIAYVGTGYHGSQIQSDVATIEGELFNALKELDIID-----DPKTASFQSSGRTDA 56
Query: 121 GVSAVGQVVSGRFCIDPPGL-VER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A GQVV+ F D P L + R +NS LP I + + V F+ ++ + R Y Y+
Sbjct: 57 GVHARGQVVA--FNTDKPNLSIPRVINSKLPNSIWAWAHAEVPYDFDPRRDANSRVYRYI 114
Query: 179 LPVFALDSSSHRDRESVMA 197
+ D S R ++A
Sbjct: 115 MSGEQYDISRIRSASKILA 133
>gi|71423309|ref|XP_812417.1| pseudouridylate synthase I [Trypanosoma cruzi strain CL Brener]
gi|70877194|gb|EAN90566.1| pseudouridylate synthase I, putative [Trypanosoma cruzi]
Length = 655
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 26/153 (16%)
Query: 54 RQLCKRRK------IAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDR 104
R++C R+ + + YCG GY+G+Q P T+EG L +A+ G + +R
Sbjct: 10 RRICLRKAPKDHTLLGLCVMYCGTGYRGLQLQTHAPTHHTVEGVLIQAMKDVGLIEAIER 69
Query: 105 GNPR--RYDWARSARTDKGVSAVGQVVSGRFC-------IDPPG----LVERLNSNLPTQ 151
G + + +ARS RTD+ V AV ++ C I+ G + E LN+ LP
Sbjct: 70 GRVKGDMHHFARSCRTDRAVHAVRNLI----CLFVFTERIEALGGCEKIKEMLNTTLPLT 125
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
IRI + +F + C++R Y YL+P +A
Sbjct: 126 IRIARVTPLMGNFIPRFSCNRRVYHYLIPAYAF 158
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 391 IDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
+ FL ++ G SF+ + IRK++G +AV+R A ++L AL D + P AP LYL
Sbjct: 324 LPFLVFQIEGNSFLFNMIRKIVGTLIAVLRG-ARETLFAEALSPDRRVVCPLAPGPYLYL 382
Query: 451 DECIFASYN 459
+ Y+
Sbjct: 383 FLSTYRRYD 391
>gi|71418252|ref|XP_810793.1| pseudouridylate synthase I [Trypanosoma cruzi strain CL Brener]
gi|70875381|gb|EAN88942.1| pseudouridylate synthase I, putative [Trypanosoma cruzi]
Length = 655
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 26/153 (16%)
Query: 54 RQLCKRRK------IAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDR 104
R++C R+ + + YCG GY+G+Q P T+EG L +A+ G + +R
Sbjct: 10 RRICLRKAPKDHTLLGLCVMYCGTGYRGLQLQTHAPTHHTVEGVLIQAMKDVGLIEAIER 69
Query: 105 GNPRR--YDWARSARTDKGVSAVGQVVSGRFC-------IDPPG----LVERLNSNLPTQ 151
G + + ++RS RTD+GV AV +V C I+ G + E LN+ LP
Sbjct: 70 GRVKGDVHHFSRSCRTDRGVHAVRNLV----CLFVFTERIEALGGCEKIKEMLNTTLPLT 125
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
IR+ + +F + C++R Y YL+P +A
Sbjct: 126 IRVARVTPLMGNFIPRFSCNRRVYHYLIPAYAF 158
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 391 IDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYL 450
+ FL ++ G SF+ + IRK++G +AV+R A ++L A+ D + P AP LYL
Sbjct: 324 LPFLVFQIEGNSFLFNMIRKIVGTLIAVLRG-ARETLFAEAVSPDRRVVCPLAPGPYLYL 382
Query: 451 DECIFASYN 459
+ Y+
Sbjct: 383 FLSTYRRYD 391
>gi|323452423|gb|EGB08297.1| hypothetical protein AURANDRAFT_11850, partial [Aureococcus
anophagefferens]
Length = 266
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 46 AGADSTTKRQLCKRRKIAIFFAYCGVGYQGM--QKNPGA--KTIEGDLEEALFHSGAVSE 101
AG D + Q C IA++ +Y G Y G Q PGA T+E L AL + V
Sbjct: 7 AGMDMSRYEQRC----IALWISYEGGAYSGFAEQNIPGAGVDTVERQLFAALKKTCLVES 62
Query: 102 RDRGNPRRYDWARSARTDKGVSAVGQVVSGRF-----CIDPPGLVERLNSNLPTQIRIFG 156
R+ ++R RTDKGVSA+GQVV R +P V LN LP +R
Sbjct: 63 RESCG-----YSRCGRTDKGVSALGQVVGLRVRSAARAGEPLDYVNMLNRVLPDDVRALA 117
Query: 157 YKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRD 191
++ V F+A+ C R Y Y P + ++ + D
Sbjct: 118 WRPVVPEFSARFSCASRTYRYFFPATSPNTGAAYD 152
>gi|395326839|gb|EJF59244.1| tRNA pseudouridine synthase [Dichomitus squalens LYAD-421 SS1]
Length = 516
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+RKIA+ F Y G+ Y GM Q++P T+EG L +AL H+ V +RD G DW R
Sbjct: 62 KRKIALKFTYNGIHYGGMEFQRDPALPTVEGVLFDALVHTKLV-DRD-GGLEGCDWQRCG 119
Query: 117 RTDKGVSAVGQVVS 130
RTDKGVSA GQVVS
Sbjct: 120 RTDKGVSAGGQVVS 133
>gi|344291496|ref|XP_003417471.1| PREDICTED: tRNA pseudouridine synthase 3-like [Loxodonta africana]
Length = 480
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 64/150 (42%), Gaps = 29/150 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G YQG Q+N TIE L EAL + V R N + R
Sbjct: 61 RRHVALRIAYLGWSYQGFASQENTN-NTIEEKLFEALTKTRLVESRQTSN-----YHRCG 114
Query: 117 RTDKGVSAVGQVVS----GRFCIDPPG-----------------LVERLNSNLPTQIRIF 155
RTDKGVSA GQV+S F D LN LP IRI
Sbjct: 115 RTDKGVSAFGQVISLDLRSHFPKDKDSEDFQLKDEANDSAKEIRYTHILNRVLPPDIRIL 174
Query: 156 GYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ V +F+A+ C +R Y Y P LD
Sbjct: 175 AWAPVEPAFSARFSCLERTYRYFFPRADLD 204
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 353 YVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEGID-----FLKC--EVVGQSFM 404
YVG+H+F N A + +R I+S V G D F C EV GQ+F+
Sbjct: 215 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSRGEDRWEESFQLCQFEVTGQAFL 274
Query: 405 LHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIFASYNKK 461
HQ+R M+ + + + +I+ L + N P A E L L +C F N K
Sbjct: 275 YHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNSQKPQYSMAVEFPLVLYDCKFE--NIK 332
Query: 462 W 462
W
Sbjct: 333 W 333
>gi|268324810|emb|CBH38398.1| tRNA pseudouridine synthase A [uncultured archaeon]
Length = 275
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 11/140 (7%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGA--KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
++A+ Y G Y G Q P A +T+EG+L +AL G + +R N ++ + RT
Sbjct: 7 RVALKIGYLGTNYHGFQIQPQAELQTVEGELFKALKRLGILEDRKTAN-----YSYAGRT 61
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERL-NSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
DKGV A+ QVVS F + R+ N+ LP I + A FNA+K +R Y Y
Sbjct: 62 DKGVHALAQVVS--FDTLNQNMTPRMINTMLPNDIWALAIAKPHAGFNARKEAIRREYRY 119
Query: 178 LLPVFA-LDSSSHRDRESVM 196
L + LD S RD ++
Sbjct: 120 FLFLQTELDISRMRDASELL 139
>gi|213406756|ref|XP_002174149.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|212002196|gb|EEB07856.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 426
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 67/131 (51%), Gaps = 12/131 (9%)
Query: 56 LCKRRKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDW 112
L K + IA+ FAY G Y G+ Q P T+EG L EAL + + +P +
Sbjct: 68 LDKTKFIALRFAYLGWNYNGLAFQTEPTPLPTVEGKLFEALMRAHLIK-----DPSTCSF 122
Query: 113 ARSARTDKGVSAVGQVVS--GRFCID-PPGLVERLNSNLPTQIRIFGYK-RVTASFNAKK 168
+R RTDKGVSA+GQVVS R+ + P + LN LP IR+ Y F+A+
Sbjct: 123 SRCGRTDKGVSAMGQVVSLNVRYSEERPIAYCDVLNRLLPEDIRVIAYSPNPPEGFDARF 182
Query: 169 FCDQRRYVYLL 179
C +R Y YL
Sbjct: 183 SCVRRHYKYLF 193
>gi|363742565|ref|XP_417852.3| PREDICTED: tRNA pseudouridine synthase 3 [Gallus gallus]
Length = 459
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 68/152 (44%), Gaps = 31/152 (20%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N + TIE L EAL + V +R N + R
Sbjct: 65 RRHVALRIAYLGWGYQGFASQENT-SNTIEEKLFEALKKTRLVDDRQTSN-----YHRCG 118
Query: 117 RTDKGVSAVGQVVSGRF------------CI-DPPGLVER----------LNSNLPTQIR 153
RTDKGVSA GQV+S C D G + LN LP IR
Sbjct: 119 RTDKGVSAFGQVISLDLRSNLSEEKKLNGCTGDSEGKSSKSEEELRYTHILNRVLPPDIR 178
Query: 154 IFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ + V F+A+ C +R Y Y P LD
Sbjct: 179 VLAWAPVEPDFSARFSCLKRTYRYFFPCADLD 210
>gi|444731902|gb|ELW72237.1| tRNA pseudouridine synthase 3 [Tupaia chinensis]
Length = 479
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 67/151 (44%), Gaps = 27/151 (17%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N + T+E L EAL + V R N + R
Sbjct: 62 RRHVALRIAYLGWGYQGFASQEN-TSNTVEEQLFEALTKTRLVESRQTSN-----YHRCG 115
Query: 117 RTDKGVSAVGQVVS---------GRFCID----------PPGLVERLNSNLPTQIRIFGY 157
RTD+GVSA GQV+S GR D LN LP IR+ +
Sbjct: 116 RTDRGVSAFGQVISLDLRSQLPRGRGSEDVHVEGTDTAQEIRYTHILNRVLPPDIRVLAW 175
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFALDSSS 188
V F+A+ C +R Y Y P LD S
Sbjct: 176 APVEPGFSARFSCLERTYRYFFPRADLDVES 206
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKCE 397
N + YVG+H+F NF A + +R ++S V G + +
Sbjct: 207 MNSAAQKYVGTHDFRNFCKMDVANGVVNFQRTVLSAQVQRVGQSPGEHTQQAPFQLCQFQ 266
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECI 454
V GQ+F+ HQ+R M+ + + + +I+ L + N P A E L L +C
Sbjct: 267 VTGQAFLYHQVRCMMAVLFLIGQGLERPEVIDELLDIESNPQKPQYSMAVEFPLVLYDCT 326
Query: 455 FASYNKKW 462
F N +W
Sbjct: 327 FE--NIRW 332
>gi|384499620|gb|EIE90111.1| hypothetical protein RO3G_14822 [Rhizopus delemar RA 99-880]
Length = 444
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 76/165 (46%), Gaps = 21/165 (12%)
Query: 59 RRKIAIFFAYCGVGYQGMQ--KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+R+IA+ AY G Y G K T+EG++ +AL ++ +P +++R
Sbjct: 72 QRRIALKVAYLGWNYCGFAHLKEKNIPTVEGEIFKALQKCSLIT-----SPEECNYSRGG 126
Query: 117 RTDKGVSAVGQVV------SGRFCIDPPG------LVERLNSNLPTQIRIFGYKRVTASF 164
RTDKGVS +GQV+ + R I G + +NS LP IRI + V +F
Sbjct: 127 RTDKGVSGLGQVIALDVRSTQRKLIKEHGDDRDLPYINMINSFLPEDIRILAWAPVATTF 186
Query: 165 NAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCL 209
NA+ C R Y Y D R+ S M +GS + CL
Sbjct: 187 NARFDCLSRTYKYFFKKEGQDIERMREAASYM--IGSHDFRNFCL 229
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 352 HYVGSHNFHNFTTRTKAED-PSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
+ +GSH+F NF A + R IISF + V DF + ++ G F+ HQ+R
Sbjct: 217 YMIGSHDFRNFCLLDAARNLQHYTREIISFEINPVEQ----DFYEVKLKGTGFLWHQVRY 272
Query: 411 MIGLAVAVVRNCAPQSLIETALQKD---VNINVPTAPEVGLYLDECIFASYNKKW 462
++ + V + ++I+ L D + P A + L L +C N KW
Sbjct: 273 IMSVLFLVGQRLEHPAIIQDLLNIDKIPARPDYPLASGIPLMLYDCEIQ--NIKW 325
>gi|326933214|ref|XP_003212702.1| PREDICTED: tRNA pseudouridine synthase 3-like [Meleagris gallopavo]
Length = 710
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 66/152 (43%), Gaps = 31/152 (20%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G GYQG Q+N + TIE L EAL + V R N + R
Sbjct: 63 RRHVALRIAYLGWGYQGFASQEN-TSNTIEEKLFEALKKTRLVDSRQTSN-----YHRCG 116
Query: 117 RTDKGVSAVGQVVSGRF------------CI-DPPG----------LVERLNSNLPTQIR 153
RTDKGVSA GQV+S C D G LN LP IR
Sbjct: 117 RTDKGVSAFGQVISLDLRSNLSKEKKLNGCTGDSEGKSSKSEEELRYTHILNRVLPPDIR 176
Query: 154 IFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ + V F+A+ C +R Y Y P LD
Sbjct: 177 VLAWAPVEPDFSARFSCLKRTYRYFFPCADLD 208
>gi|124783935|gb|ABN14957.1| tRNA pseudouridine synthase A [Taenia asiatica]
Length = 123
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
RK AI Y GVG+ GMQ+N G +TIEG+L AL ++G + E NP + R+++TD
Sbjct: 57 RKCAILVVYSGVGFCGMQRNEGFRTIEGELMMALCNAGYILEEHMKNPSMICFQRASKTD 116
Query: 120 KGVSAVG 126
K VSA G
Sbjct: 117 KNVSAAG 123
>gi|336476042|ref|YP_004615183.1| tRNA pseudouridine synthase A [Methanosalsum zhilinae DSM 4017]
gi|335929423|gb|AEH59964.1| tRNA pseudouridine synthase A [Methanosalsum zhilinae DSM 4017]
Length = 271
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+IA+ AY G Y G Q P T+EG L AL + G +S+ P ++A + RTD
Sbjct: 2 RIALKLAYIGSDYHGSQVQPDVDTVEGQLFRALENLGIISD-----PHSANYASAGRTDA 56
Query: 121 GVSAVGQVVSGRFCIDPPGL-VER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
V A GQVV+ F + P L + R +NS LP I + + V F+ ++ R Y Y+
Sbjct: 57 SVHAAGQVVA--FDTEAPNLAIPRVINSKLPESIWAWAHAEVPDDFDPRRNAKTRSYRYI 114
Query: 179 L 179
+
Sbjct: 115 M 115
>gi|284161452|ref|YP_003400075.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631]
gi|284011449|gb|ADB57402.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631]
Length = 262
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+IA AY G + G Q P +T+ G+L +A G +P++ + + RTD
Sbjct: 2 RIAYKLAYVGTNFHGFQYQPNVRTVAGELFKAFRALGI-------DPKKAKFRCAGRTDA 54
Query: 121 GVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
GV A GQV++ ++ P N++LP + + + V FN + R YVY++P
Sbjct: 55 GVHAFGQVIA--INVEKPIFPRMFNAHLPEDVTFWAWTEVDEKFNPRH-AKSRTYVYVMP 111
Query: 181 VFALDSSSHRDRESVM 196
D S+ R ++
Sbjct: 112 AEGYDISAMRKASKLL 127
>gi|50293511|ref|XP_449167.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528480|emb|CAG62137.1| unnamed protein product [Candida glabrata]
Length = 438
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 74/161 (45%), Gaps = 25/161 (15%)
Query: 60 RKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
R IA+ FAY G Y G+ QK+P TIEG + EAL V P+ ++++R
Sbjct: 86 RFIALRFAYLGWNYNGLAIQKDPTPLPTIEGTIIEALNKCKLVPS---ITPQEFEFSRCG 142
Query: 117 RTDKGVSAVGQVVSGRF--------CIDPPG------LVERLNSNLPTQIRIFGY-KRVT 161
RTDKGVSA+ QV+S R DP V LN LP IRI R
Sbjct: 143 RTDKGVSAMNQVISLRVRSNLTDEEQKDPRNDHKEIQYVAILNQLLPDDIRISAVCLRPP 202
Query: 162 ASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSG 202
SF+A+ C+ R Y YL LD DR A L G
Sbjct: 203 NSFDARFSCEYRHYKYLFHKDGLD----LDRMQKAAKLYEG 239
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 16/129 (12%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPS-ARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
R + K Y G H+F NF ++ + R +IS V N DF +++G +F
Sbjct: 229 RMQKAAKLYEGEHDFRNFCKLDGSKQITNYNRTMISANIKHVYN----DFYCFDLIGSAF 284
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAP------EVGLYLDECIFAS 457
+ HQ+R M + V + +LIE L DV ++P P ++ L L +C F +
Sbjct: 285 LWHQVRCMTAILFLVGQGLEEPTLIEKML--DVT-SMPQKPMYEMASDIPLLLYDCKFPA 341
Query: 458 YNKKWKDSH 466
+W++++
Sbjct: 342 M--EWQEAN 348
>gi|312136442|ref|YP_004003779.1| tRNA pseudouridine synthase a [Methanothermus fervidus DSM 2088]
gi|311224161|gb|ADP77017.1| tRNA pseudouridine synthase A [Methanothermus fervidus DSM 2088]
Length = 277
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
+KIA+ AY G + G Q+ P +T+EG+L +AL +G + E R + RTD
Sbjct: 2 KKIALKVAYIGTHFFGFQRQPDLRTVEGELIKALVETGILDESGVARFR-----SAGRTD 56
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNA 166
KGV A+G VV+ F D ++ ++NS LP + I G V F
Sbjct: 57 KGVHALGNVVT--FFTDEDVIINQINSCLPDDVYILGKASVPYGFKT 101
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
K + G H+F NF+ R + +P RYI + V V+ +++ +V+G+SF+ +RK
Sbjct: 128 KKFEGRHDFTNFSRRVEERNPI--RYI-----EKVDVVDKGEYIWVDVIGESFLWQMVRK 180
Query: 411 MIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEE 468
M+ + + + I+ L + + + P L L + + Y K HEE
Sbjct: 181 MVKVLFDIGKEEYEPEKIDEFLDTEEKVYIEPMPPENLILMKVM---YKPPVKFEHEE 235
>gi|406837773|ref|ZP_11097367.1| tRNA pseudouridine synthase [Lactobacillus vini DSM 20605]
Length = 249
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 11/124 (8%)
Query: 56 LCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+ R K+ + AY G + G Q P +T++G LE+A V+ ++ N + + S
Sbjct: 1 MTVRYKVTL--AYDGTNFAGFQVQPHQRTVQGVLEKA------VNRMNKANNYVHIFG-S 51
Query: 116 ARTDKGVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQR 173
RTD GV A+GQVV D P G+V LNS LP +++ + V+A+F+A+ +
Sbjct: 52 GRTDAGVHALGQVVHFDLVNDVPDSGIVNGLNSMLPLDMQVLQAEHVSANFHARYTTHGK 111
Query: 174 RYVY 177
RY+Y
Sbjct: 112 RYLY 115
>gi|313229675|emb|CBY18490.1| unnamed protein product [Oikopleura dioica]
Length = 402
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 55 QLCKRRKIAIFFAYCGVGYQGMQKNP---GAKTIEGDLEEALFHSGAVSERDRGNPRRYD 111
Q+ ++RKIA+ F+Y G Y G+Q++P G TIE + +A+ + V D G D
Sbjct: 60 QIFRKRKIALRFSYDGTKYNGLQRSPVPAGKTTIEDVIFDAILRTKVVD--DIGTA---D 114
Query: 112 WARSARTDKGVSAVGQVVS-------------GRFCIDPPGLVERLNSNLPTQIRIFGYK 158
+ RTDKGV AV V+S + V +N LP I I +
Sbjct: 115 YIAGGRTDKGVHAVNNVISLFVNSRLSEDEINENVTVGERNFVAIINRQLPDDIWITSWA 174
Query: 159 RVTASFNAKKFCDQRRYVYLLPVFALD 185
++ F+A+ C R Y Y+ LD
Sbjct: 175 PISFDFSARFSCKSRHYNYIFDSSGLD 201
>gi|196007746|ref|XP_002113739.1| hypothetical protein TRIADDRAFT_26740 [Trichoplax adhaerens]
gi|190584143|gb|EDV24213.1| hypothetical protein TRIADDRAFT_26740, partial [Trichoplax
adhaerens]
Length = 279
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 64/136 (47%), Gaps = 19/136 (13%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+R++A AY G Y G+ G KTIE +L AL + + R N ++RS R
Sbjct: 8 QRRVAFKLAYIGWDYYGLASQEGIEKTIEAELFNALTKTCLIENRTNSN-----YSRSGR 62
Query: 118 TDKGVSAVGQVVSGRF---CIDPPGL----------VERLNSNLPTQIRIFGYKRVTASF 164
TDKGVSA+GQV+S PG+ V+ LN LP IRI + V F
Sbjct: 63 TDKGVSALGQVISLNVRTNLASGPGVIVETVSELSYVKLLNKVLPGDIRILAWAPVDNDF 122
Query: 165 NAKKFCDQRRYVYLLP 180
+A+ R Y Y P
Sbjct: 123 SARFNTVSRTYKYYFP 138
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 355 GSHNFHNFTTRTKAEDPSARRYIISFGADS-----VVNVEGIDFLKCEVVGQSFMLHQIR 409
G H+F NF A + RR I+S S V+ +G + + V G++F+ HQ+R
Sbjct: 156 GEHDFRNFCKMDLANVSNFRREILSIKVQSIETPYVLQNQGFEMCEIIVCGKAFLWHQVR 215
Query: 410 KMIGLAVAVVRNCAPQSLIETAL 432
M+ + + + ++I L
Sbjct: 216 CMVAILFLIGQGLEDANIINYML 238
>gi|407420847|gb|EKF38702.1| pseudouridylate synthase I, putative [Trypanosoma cruzi
marinkellei]
Length = 623
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 20/133 (15%)
Query: 68 YCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNPR--RYDWARSARTDKGV 122
YCG GY+G+Q P T+EG L +A+ G + +RG + + +ARS RTD+GV
Sbjct: 2 YCGTGYRGLQLQTHAPTHYTVEGVLIQAMKDVGLIEAIERGRVKGDMHHFARSCRTDRGV 61
Query: 123 SAVGQVVSGRFCI-------DPPG----LVERLNSNLPTQIRIFGYKRVTASFNAKKFCD 171
AV ++ C+ + G L E LN+ LP IR+ + +F + C+
Sbjct: 62 HAVRNLI----CLFVFTERLEALGGCEKLKEMLNTALPLTIRVARVTPLMGNFIPRFSCN 117
Query: 172 QRRYVYLLPVFAL 184
+R Y YL+P +A
Sbjct: 118 RRVYHYLIPAYAF 130
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 380 FGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNIN 439
F D + + FL ++ G SF+ + IRK++G +AV+R A ++L AL D +
Sbjct: 285 FSVDGFPSDVSLPFLIFQIEGNSFLFNMIRKIVGTLIAVLRG-ARETLFAEALSPDRRVV 343
Query: 440 VPTAPEVGLYLDECIFASYN 459
P AP LYL + Y+
Sbjct: 344 CPLAPGPYLYLFLSTYRRYD 363
>gi|448474280|ref|ZP_21602139.1| tRNA pseudouridine synthase A [Halorubrum aidingense JCM 13560]
gi|445817587|gb|EMA67456.1| tRNA pseudouridine synthase A [Halorubrum aidingense JCM 13560]
Length = 288
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 63/136 (46%), Gaps = 15/136 (11%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRG------NPRRYDWARSA 116
A AY G Y G Q+ P A+T+EG L AL G + DRG P Y A +
Sbjct: 3 AFRVAYDGREYAGFQRQPHARTVEGTLLRALAKHGIL---DRGEGPTHATPPGY--AAAG 57
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
RTD GVSA+ Q V+ PP L R N LP IR++ V F+A +R Y
Sbjct: 58 RTDAGVSALAQTVA---FEAPPWLTPRAFNGQLPGSIRVWAAADVREGFHATHDAVERTY 114
Query: 176 VYLLPVFALDSSSHRD 191
Y L A+D RD
Sbjct: 115 RYHLYAPAIDDDRVRD 130
>gi|49899182|gb|AAH75766.1| Zgc:56653 protein [Danio rerio]
Length = 386
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 66/152 (43%), Gaps = 31/152 (20%)
Query: 59 RRKIAIFFAYCGVGYQG--MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G YQG +Q+N T+E L EAL + + +R + R
Sbjct: 57 RRHVALRLAYLGWQYQGFAVQENTD-NTVEARLFEALLKTKLIQDRQTSC-----YHRCG 110
Query: 117 RTDKGVSAVGQVVS-----------------------GRFCIDPPGLVERLNSNLPTQIR 153
RTDKGVSA QV+S G+ D V+ LN LP IR
Sbjct: 111 RTDKGVSAFSQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKILNRVLPQDIR 170
Query: 154 IFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
I + V + F+A+ C R Y Y P LD
Sbjct: 171 ILQWAPVESGFSARFDCQSRTYRYYFPRGDLD 202
>gi|47208381|emb|CAF93145.1| unnamed protein product [Tetraodon nigroviridis]
Length = 409
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 63/146 (43%), Gaps = 30/146 (20%)
Query: 59 RRKIAIFFAYCGVGYQG--MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G YQG +Q+N T+E L EAL + + +R N + R
Sbjct: 72 RRHVALRLAYLGWAYQGFAVQENTD-NTVEARLFEALHKTCLIQDRQSSN-----YHRCG 125
Query: 117 RTDKGVSAVGQVVSGRFCIDPP----------------------GLVERLNSNLPTQIRI 154
RTDKGVSA QV + + PP V+ LN LP IRI
Sbjct: 126 RTDKGVSAFSQVTAVQSLHTPPFSFKLPENVDADKKSQTAVSELPYVKMLNRVLPHDIRI 185
Query: 155 FGYKRVTASFNAKKFCDQRRYVYLLP 180
+ + F+A+ C R Y Y P
Sbjct: 186 WNWAPAAEGFSARFDCQSRTYRYYFP 211
>gi|317419455|emb|CBN81492.1| tRNA pseudouridine synthase 3 [Dicentrarchus labrax]
Length = 472
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 68/154 (44%), Gaps = 33/154 (21%)
Query: 59 RRKIAIFFAYCGVGYQG--MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G YQG +Q+N T+E L EAL + + +R N + R
Sbjct: 70 RRHVALRLAYLGWSYQGFAVQENTD-NTVEARLFEALLKTRLIQDRQSSN-----YHRCG 123
Query: 117 RTDKGVSAVGQVV-----SGRFC----IDPP----------------GLVERLNSNLPTQ 151
RTDKGVSA QV+ S +FC + P V+ LN LP
Sbjct: 124 RTDKGVSAFSQVITIDLRSTQFCGGLGVTLPENVDVRSKNKASGSELPYVKMLNRVLPQD 183
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
IRI + F+A+ C R Y Y P +LD
Sbjct: 184 IRILDWAPAAEGFSARFDCQSRTYRYYFPRGSLD 217
>gi|448679254|ref|ZP_21690091.1| tRNA pseudouridine synthase A [Haloarcula argentinensis DSM 12282]
gi|445771352|gb|EMA22409.1| tRNA pseudouridine synthase A [Haloarcula argentinensis DSM 12282]
Length = 275
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G Y G Q+ P T+EG L AL +V ER G P RY A + RTD GVSA
Sbjct: 7 AYDGRPYHGFQRQPDVDTVEGRLRSALVRL-SVCERGEGLPGRY--AAAGRTDAGVSARA 63
Query: 127 QVVSGRFCIDPPGLVE--RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
Q ++ D P + N LP IR++ V +F+A +R Y Y L
Sbjct: 64 QTIA----FDAPAWLSPAAFNGELPDDIRVWASADVPENFHATHDAAERTYTYYL 114
>gi|47214586|emb|CAG00940.1| unnamed protein product [Tetraodon nigroviridis]
Length = 412
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 65/149 (43%), Gaps = 33/149 (22%)
Query: 59 RRKIAIFFAYCGVGYQG--MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G YQG +Q+N T+E L EAL + + +R N + R
Sbjct: 72 RRHVALRLAYLGWAYQGFAVQENTD-NTVEARLFEALHKTCLIQDRQSSN-----YHRCG 125
Query: 117 RTDKGVSAVGQVV-----SGRFC--------------------IDPPGLVERLNSNLPTQ 151
RTDKGVSA QV+ S +FC + V+ LN LP
Sbjct: 126 RTDKGVSAFSQVITIESRSTQFCGGLGVKLPENVDADKKSQTAVSELPYVKMLNRVLPHD 185
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
IRI+ + F+A+ C R Y Y P
Sbjct: 186 IRIWNWAPAAEGFSARFDCQSRTYRYYFP 214
>gi|320163253|gb|EFW40152.1| tRNA-pseudouridine synthase [Capsaspora owczarzaki ATCC 30864]
Length = 548
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 63/149 (42%), Gaps = 32/149 (21%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+R IA+ AY G Y G+ P +T+EG L AL + + N ++R RT
Sbjct: 139 KRHIALKIAYLGWKYNGLAIQPDVETVEGHLISALKTCMLIPDLSWAN-----YSRCGRT 193
Query: 119 DKGVSAVGQVVS------------------------GRFCIDPPGLVE---RLNSNLPTQ 151
D GVSA GQVVS GR +E +LN LP
Sbjct: 194 DAGVSAFGQVVSLDVRTNLTEGVGVIQQESAIPFQKGRKTEATHAELEYVFKLNRQLPAD 253
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
IR+ + V +F+A+ C R+Y Y P
Sbjct: 254 IRVVAWTPVPLAFDARFSCLYRKYKYFFP 282
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 346 FNRILKHYVGSHNFHNFTTRTKAED--PSARRYIISF-----------GADSVVNVEG-- 390
R +++VG+H++ NF +T ++ S R I++F A ++EG
Sbjct: 291 MQRAAQYFVGTHDYRNFC-KTNFDNGVKSFVRRILAFDVVKSTCLPINSATDATDLEGQA 349
Query: 391 IDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVG 447
+ + V+G +F+ HQ+R M + V + P ++E L + N P A +V
Sbjct: 350 AEMYELNVLGFAFLYHQVRCMTSILFMVGQGLEPPEVVEHMLDIEKCPNRPNYNMASDVP 409
Query: 448 LYLDECIF 455
L L +C+F
Sbjct: 410 LVLYDCVF 417
>gi|71985046|ref|NP_496062.3| Protein TAG-124 [Caenorhabditis elegans]
gi|1353139|sp|Q09524.1|TG124_CAEEL RecName: Full=Probable tRNA pseudouridine synthase tag-124;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|3875428|emb|CAA87378.1| Protein TAG-124 [Caenorhabditis elegans]
Length = 402
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 32/146 (21%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAK-TIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
RRKIAI F Y G + G+ + P + T+E + +AL + + + + D++R R
Sbjct: 29 RRKIAIQFFYLGWEHDGLVQQPHTQNTVENHIMQALIKTHLIEDWTKC-----DFSRCGR 83
Query: 118 TDKGVSAVGQVV-----------SGRFCIDPPG---------------LVERLNSNLPTQ 151
TDKGVSA Q SG F D V+ LN LP
Sbjct: 84 TDKGVSAFKQTAAMVVRSLCPGDSGVFWSDSTQEHQKVDYKASGEELPYVKMLNGVLPKT 143
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVY 177
IR+F + V +FNA+ C++R Y Y
Sbjct: 144 IRVFAWAPVAQTFNARFDCNRRTYKY 169
>gi|21227597|ref|NP_633519.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1]
gi|452210068|ref|YP_007490182.1| tRNA pseudouridine synthase A [Methanosarcina mazei Tuc01]
gi|34395892|sp|Q8PWT1.1|TRUA_METMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|20905982|gb|AAM31191.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1]
gi|452099970|gb|AGF96910.1| tRNA pseudouridine synthase A [Methanosarcina mazei Tuc01]
Length = 269
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 9/138 (6%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++A+ AY G + G Q P +T+E +L +AL + + +P+ ++ + RTD
Sbjct: 2 RVALKLAYIGTEFHGSQIQPSVETVEKELFKALRNLRIIE-----SPKSANYICAGRTDA 56
Query: 121 GVSAVGQVVSGRFCIDPPGL-VERL-NSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A+GQV++ F D P L + R+ NS LP I ++ + V F+A++ R Y Y+
Sbjct: 57 GVHALGQVIA--FDTDRPNLAIPRIINSGLPPTIWVWAHAEVPYDFDARRHAVSRHYRYV 114
Query: 179 LPVFALDSSSHRDRESVM 196
+ D S R+ ++
Sbjct: 115 ISGEGYDISKMREASKLL 132
>gi|282163988|ref|YP_003356373.1| tRNA pseudouridine synthase A [Methanocella paludicola SANAE]
gi|282156302|dbj|BAI61390.1| tRNA pseudouridine synthase A [Methanocella paludicola SANAE]
Length = 279
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
K+A AY G + G Q PG +T+EG+L + L G + E+ + S RTD
Sbjct: 14 KVAFKLAYVGTDFSGSQSQPGRRTVEGELRKGLVEKGIIGEKTKVE-------FSGRTDA 66
Query: 121 GVSAVGQVVSGRFCIDPPGLVER--LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A+GQV++ F L E +NS LP + ++ V F+ ++ R Y YL
Sbjct: 67 GVHALGQVIA--FVPKNDKLTEPRIINSVLPADMWVYAKAVVPDDFDPRRHAVSRTYRYL 124
Query: 179 L 179
L
Sbjct: 125 L 125
>gi|41056053|ref|NP_956361.1| tRNA pseudouridine synthase 3 [Danio rerio]
gi|29436973|gb|AAH49516.1| Zgc:56653 [Danio rerio]
Length = 460
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 66/152 (43%), Gaps = 31/152 (20%)
Query: 59 RRKIAIFFAYCGVGYQG--MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
RR +A+ AY G YQG +Q+N T+E L EAL + + +R + R
Sbjct: 57 RRHVALRLAYLGWQYQGFAVQENTD-NTVEARLFEALLKTKLIQDRQTSC-----YHRCG 110
Query: 117 RTDKGVSAVGQVVS-----------------------GRFCIDPPGLVERLNSNLPTQIR 153
RTDKGVSA QV+S G+ D V+ LN LP IR
Sbjct: 111 RTDKGVSAFSQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKILNRVLPHDIR 170
Query: 154 IFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
I + V + F+A+ C R Y Y P LD
Sbjct: 171 ILQWAPVESGFSARFDCQSRTYRYYFPRGDLD 202
>gi|302676700|ref|XP_003028033.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8]
gi|300101721|gb|EFI93130.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8]
Length = 455
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 19/149 (12%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKN-PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
RRKIA+ F Y G + G+ QK+ T+EG L AL + V + G W R
Sbjct: 78 RRKIALKFCYGGWDFGGLAIQKDRTPLPTVEGKLFGALVRARLVDPK--GGLEGCGWERC 135
Query: 116 ARTDKGVSAVGQVVS-------GRFCIDPPG-------LVERLNSNLPTQIRIFGYKRVT 161
RTD+GVSA GQV+S + + P + +N +LP I+I + V
Sbjct: 136 GRTDRGVSAAGQVISLWVRSALSQEELTPTATPTEEHPFIYMINRHLPDTIKILAWSPVD 195
Query: 162 ASFNAKKFCDQRRYVYLLPVFALDSSSHR 190
SF+++ C R Y Y LD ++ R
Sbjct: 196 PSFSSRYSCTWRHYKYFFSPVGLDVAAMR 224
>gi|111220576|ref|YP_711370.1| tRNA pseudouridine synthase A [Frankia alni ACN14a]
gi|111148108|emb|CAJ59776.1| tRNA pseudouridine synthase A (Pseudouridylate synthase I)
(Pseudouridine synthase I) (Uracil hydrolyase) [Frankia
alni ACN14a]
Length = 288
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ + AY G + G + PG +T++GD+E+AL ++ + RTD
Sbjct: 21 RLRLDIAYDGTPFAGWARQPGQRTVQGDVEDALIRVARLAA--------VRLTVAGRTDS 72
Query: 121 GVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A GQV D P GL RLN L +R+ G A F+A+ RRYVY
Sbjct: 73 GVHAAGQVAHVDLPTDVPLGGLARRLNGVLDRSVRVTGLAPAPAGFDARFSALSRRYVY 131
>gi|448634352|ref|ZP_21674750.1| tRNA pseudouridine synthase A [Haloarcula vallismortis ATCC 29715]
gi|445749325|gb|EMA00770.1| tRNA pseudouridine synthase A [Haloarcula vallismortis ATCC 29715]
Length = 279
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G Y G Q+ P T+E L AL G V ER G P +Y A + RTD GVSA
Sbjct: 7 AYDGRPYHGFQRQPDVDTVEARLRSALVRLG-VCERGNGLPEQY--AAAGRTDAGVSARA 63
Query: 127 QVVSGRFCIDPPGLVE--RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
Q V+ D P + N LP IR++ V A F+A +R Y Y L
Sbjct: 64 QTVA----FDAPEWLSPAAFNGELPDDIRVWASADVPAEFHATHDATRRTYTYYL 114
>gi|448304472|ref|ZP_21494410.1| tRNA pseudouridine synthase A [Natronorubrum sulfidifaciens JCM
14089]
gi|445590905|gb|ELY45117.1| tRNA pseudouridine synthase A [Natronorubrum sulfidifaciens JCM
14089]
Length = 318
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G GY G Q+ P T+E + +AL S V D P Y A + RTD GV
Sbjct: 39 AFRIAYDGTGYYGFQRQPDVATVEDTIFDAL-RSLEVLAPDADKPAGY--AAAGRTDAGV 95
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL-- 179
SA+ Q ++ P L R LN+ LP +R + + V SF+A +R Y Y L
Sbjct: 96 SALAQTIT---LEGPEWLTPRALNAELPAAVRAWAFADVDDSFHATHDATRRTYTYHLYA 152
Query: 180 PVFALDSSS 188
P A DSS+
Sbjct: 153 PPGAADSST 161
>gi|344210745|ref|YP_004795065.1| tRNA pseudouridine synthase A [Haloarcula hispanica ATCC 33960]
gi|343782100|gb|AEM56077.1| tRNA pseudouridine synthase A [Haloarcula hispanica ATCC 33960]
Length = 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G Y G Q+ P T+EG L AL G V ER G P Y A + RTD GVSA
Sbjct: 7 AYDGRPYHGFQRQPDVDTVEGRLRSALVRLG-VCERGDGLPECY--AAAGRTDAGVSARA 63
Query: 127 QVVSGRFCIDPPGLVE--RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
Q V+ D P + N LP IR++ V+ F+A +R Y Y L
Sbjct: 64 QTVA----FDAPAWLSPAAFNGELPDDIRVWASVDVSEGFHATHDATERTYTYYL 114
>gi|448511902|ref|ZP_21616281.1| tRNA pseudouridine synthase A [Halorubrum distributum JCM 9100]
gi|448519915|ref|ZP_21618122.1| tRNA pseudouridine synthase A [Halorubrum distributum JCM 10118]
gi|445694736|gb|ELZ46855.1| tRNA pseudouridine synthase A [Halorubrum distributum JCM 9100]
gi|445703479|gb|ELZ55409.1| tRNA pseudouridine synthase A [Halorubrum distributum JCM 10118]
Length = 305
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 61/136 (44%), Gaps = 11/136 (8%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERD---RGNPRRYDWARSARTD 119
A AY G GY G Q+ P A T+ L EAL G V D P Y A + RTD
Sbjct: 14 AFRVAYDGRGYAGFQRQPHASTVADALLEALAEHGVVERGDGSTHATPAGY--AAAGRTD 71
Query: 120 KGVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GVSAV Q V+ P L R N +LP +R++ V F+A QR Y Y
Sbjct: 72 AGVSAVAQTVA---FEAPTWLTPRAFNGHLPGSVRVWAAADVEGGFHATHDAVQRTYRYH 128
Query: 179 L--PVFALDSSSHRDR 192
L P +S S R R
Sbjct: 129 LYAPESGSESGSDRTR 144
>gi|156369650|ref|XP_001628088.1| predicted protein [Nematostella vectensis]
gi|156215055|gb|EDO36025.1| predicted protein [Nematostella vectensis]
Length = 464
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 31/152 (20%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
R+IA+ +Y G G T+E L +AL + V R+ + ++R RT
Sbjct: 80 RRIALRLSYLGWDMHGFASQEKIDNTVEAHLFDALIKACLVKSRESCS-----YSRCGRT 134
Query: 119 DKGVSAVGQVVS--GRFCIDP-PGLVER----------------------LNSNLPTQIR 153
DKGVSA GQV+S R +D PG++ R LN LP +IR
Sbjct: 135 DKGVSAFGQVISLNVRTNLDKGPGVILRQESSVGRDTKGKTMKEILYVDILNKVLPKEIR 194
Query: 154 IFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ + V F+A+ C R+Y YL P LD
Sbjct: 195 VLAWAPVELDFDARFSCSYRKYKYLFPSANLD 226
>gi|391333028|ref|XP_003740926.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Metaseiulus
occidentalis]
Length = 457
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 58 KRRKIAIFFAYCGVGYQG-MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
K R +A+ F Y G Y+G + ++ +TIE + EAL+ + V +R+ N + R
Sbjct: 104 KLRHVALKFLYLGWDYKGFVVQDDTDRTIEAVIFEALYRTKLVRDRETSN-----YHRCG 158
Query: 117 RTDKGVSAVGQVVS---------GRFCIDPPGL--------------VERLNSNLPTQIR 153
RTDKGVSA QV++ G + PP V+ LN LP +IR
Sbjct: 159 RTDKGVSAFSQVITLDLRSNLEDGVGVVTPPDYRAGRTQISGEEIDYVKILNRVLPAEIR 218
Query: 154 IFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVM 196
+ + V +A+ C R Y Y P L S R+ ++
Sbjct: 219 MIAWSPVDPRLSARFDCRMRSYRYFFPRGRLKVESMREASRLL 261
>gi|20089106|ref|NP_615181.1| tRNA pseudouridine synthase A [Methanosarcina acetivorans C2A]
gi|30913395|sp|Q8TU65.1|TRUA_METAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|19913971|gb|AAM03661.1| pseudouridylate synthase [Methanosarcina acetivorans C2A]
Length = 269
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++A+ AY G + G Q P +T+E +L +AL + + +P+ D+ + RTD
Sbjct: 2 RVALKLAYIGTEFHGSQIQPNVETVEKELFKALRNLSIIE-----SPKSADYTCAGRTDA 56
Query: 121 GVSAVGQVVSGRFCIDPPGLV--ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A+GQVV+ F + P L +NS LP I + + V F+A++ R Y Y+
Sbjct: 57 GVHALGQVVA--FDTEKPNLAIPRVINSELPPAIWAWAHAEVPYYFDARRSAVSRHYHYV 114
Query: 179 LPVFALDSSSHRDRESVM 196
+ D S R+ ++
Sbjct: 115 MSGEDYDISKMREASKLL 132
>gi|340755327|ref|ZP_08692017.1| tRNA pseudouridine synthase A [Fusobacterium sp. D12]
gi|421500261|ref|ZP_15947272.1| tRNA pseudouridine(38-40) synthase [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
gi|313687154|gb|EFS23989.1| tRNA pseudouridine synthase A [Fusobacterium sp. D12]
gi|402268675|gb|EJU18041.1| tRNA pseudouridine(38-40) synthase [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
Length = 242
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 13/154 (8%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R I I + Y G + G Q+ P +T++G++E++LFH + E + D S RTD
Sbjct: 2 RNIKISYQYDGSSFMGFQRQPNQRTVQGEIEKSLFH--ILRE-------KIDLTSSGRTD 52
Query: 120 KGVSAVGQVVSGRFCIDPPG--LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
+GV A+ QV + ++ P L L+ NLP I + + V + F+A+ R Y Y
Sbjct: 53 RGVHAIQQVSNFFTAVNIPSDRLFYALSRNLPEDILLLQVEEVDSEFHARFSAKTRSYRY 112
Query: 178 LLPVFALDSSSHRDRESVMASLGSGNELVKCLEC 211
+ + + HR + V + S E +K L+
Sbjct: 113 CI-TWKKNPFEHRYKAYVKEKIES-TEFLKILQV 144
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 342 EKKRFNRILKHYVGSHNFHNFTTRTKAEDPS---ARRYIISFGADSVVNVEGIDFLKCEV 398
E F +IL+ ++G HNF NF + +D S R I S + V N ID +
Sbjct: 134 ESTEFLKILQVFIGRHNFQNF----RLQDSSFANPMREIYSISVEEVENGMNID-----I 184
Query: 399 VGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP--TAPEVGLYL 450
V +F+ QIR MIG A+ V I T + +++ P A GLYL
Sbjct: 185 VANAFLKSQIRIMIGTALQVYFGKVEGDRI-TRMLEELETEFPKYLADSSGLYL 237
>gi|419841107|ref|ZP_14364485.1| tRNA pseudouridine synthase A [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|386906126|gb|EIJ70871.1| tRNA pseudouridine synthase A [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
Length = 242
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 13/154 (8%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R I I + Y G + G Q+ P +T++G++E++LFH + E + D S RTD
Sbjct: 2 RNIKISYQYDGSSFMGFQRQPNQRTVQGEIEKSLFH--ILRE-------KIDLTSSGRTD 52
Query: 120 KGVSAVGQVVSGRFCIDPPG--LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
+GV A+ QV + ++ P L L+ NLP I + + V + F+A+ R Y Y
Sbjct: 53 RGVHAIQQVSNFFTAVNIPSDRLFYALSRNLPEDILLLQVEEVDSEFHARFSAKTRSYRY 112
Query: 178 LLPVFALDSSSHRDRESVMASLGSGNELVKCLEC 211
+ + + HR + V + S E +K L+
Sbjct: 113 CI-TWKKNPFEHRYKAYVKEKIES-TEFLKILQV 144
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 342 EKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQ 401
E F +IL+ +VG HNF NF + A + R I S + V N ID +V
Sbjct: 134 ESTEFLKILQVFVGKHNFQNFRLQDSA-FANPMREIYSISVEEVENGMNID-----IVAN 187
Query: 402 SFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP--TAPEVGLYL 450
+F+ QIR MIG A+ V I T + +++ P A GLYL
Sbjct: 188 AFLKSQIRIMIGTALQVYFGKVEGDRI-TRMLEELETEFPKYLADSSGLYL 237
>gi|332024452|gb|EGI64650.1| tRNA pseudouridine synthase 3 [Acromyrmex echinatior]
Length = 443
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 74/177 (41%), Gaps = 17/177 (9%)
Query: 21 EPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQ-KN 79
E ++LK++ T +D + + C +R I + F Y G Y G +
Sbjct: 35 EAHNEQLKLTITKRTDTKMKKEETPGKVRKSFDFSRCHKRHILLKFYYLGWDYHGFAVQE 94
Query: 80 PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS--GRFCIDP 137
TIE L AL S + R+ N + R RTDKGVS+ QV+S R ++P
Sbjct: 95 DNTDTIEHHLFAALLKSCCIESRESSN-----YHRCGRTDKGVSSFSQVISLDVRSRLEP 149
Query: 138 PG---------LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
+ LN LP IR + V++ F+A+ C R Y Y P LD
Sbjct: 150 ENQDNLSDELPYCKILNRLLPANIRCIAWCPVSSIFSARFDCKFRSYRYFFPRGNLD 206
>gi|448453731|ref|ZP_21594074.1| tRNA pseudouridine synthase A [Halorubrum litoreum JCM 13561]
gi|448485752|ref|ZP_21606897.1| tRNA pseudouridine synthase A [Halorubrum arcis JCM 13916]
gi|445807531|gb|EMA57616.1| tRNA pseudouridine synthase A [Halorubrum litoreum JCM 13561]
gi|445817451|gb|EMA67325.1| tRNA pseudouridine synthase A [Halorubrum arcis JCM 13916]
Length = 305
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 61/136 (44%), Gaps = 11/136 (8%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERD---RGNPRRYDWARSARTD 119
A AY G GY G Q+ P A T+ L EAL G V D P Y A + RTD
Sbjct: 14 AFRVAYDGRGYAGFQRQPHASTVADALLEALAEHGVVERGDGSTHATPVGY--AAAGRTD 71
Query: 120 KGVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GVSAV Q V+ P L R N +LP +R++ V F+A QR Y Y
Sbjct: 72 AGVSAVAQTVA---FEAPTWLTPRAFNGHLPGSVRVWAAADVEGGFHATHDAVQRTYRYH 128
Query: 179 L--PVFALDSSSHRDR 192
L P +S S R R
Sbjct: 129 LYAPESGSESGSDRTR 144
>gi|30692743|ref|NP_198390.2| tRNA pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|27311599|gb|AAO00765.1| putative protein [Arabidopsis thaliana]
gi|30725698|gb|AAP37871.1| At5g35400 [Arabidopsis thaliana]
gi|332006580|gb|AED93963.1| tRNA pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 420
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERD------RGNPRRYD 111
+R I +Y G + G QK P T++G +E++L G V ER + P
Sbjct: 91 ERVNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKSL--GGFVDERKAQLLKKKCKPLEGR 148
Query: 112 WARSARTDKGVSAVGQVVS---GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
+ RTDKGVSA+ QV S R I+P + + +N + ++R+ +V+ SF+
Sbjct: 149 VLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIEDAINKDASGKLRVVSISKVSRSFHPNF 208
Query: 169 FCDQRRYVYLLPV 181
RRY+Y+ P+
Sbjct: 209 SAKWRRYLYIFPL 221
>gi|448428370|ref|ZP_21584240.1| tRNA pseudouridine synthase A [Halorubrum terrestre JCM 10247]
gi|445676539|gb|ELZ29059.1| tRNA pseudouridine synthase A [Halorubrum terrestre JCM 10247]
Length = 305
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 61/136 (44%), Gaps = 11/136 (8%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERD---RGNPRRYDWARSARTD 119
A AY G GY G Q+ P A T+ L EAL G V D P Y A + RTD
Sbjct: 14 AFRVAYDGRGYAGFQRQPHASTVADALLEALAEHGVVERGDGSTHATPVGY--AAAGRTD 71
Query: 120 KGVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GVSAV Q V+ P L R N +LP +R++ V F+A QR Y Y
Sbjct: 72 AGVSAVAQTVA---FEAPTWLTPRAFNGHLPGSVRVWAAADVEGGFHATHDAVQRTYRYH 128
Query: 179 L--PVFALDSSSHRDR 192
L P +S S R R
Sbjct: 129 LYAPESGSESGSDRTR 144
>gi|448308199|ref|ZP_21498078.1| tRNA pseudouridine synthase A [Natronorubrum bangense JCM 10635]
gi|445594309|gb|ELY48471.1| tRNA pseudouridine synthase A [Natronorubrum bangense JCM 10635]
Length = 282
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G GY G Q+ P T+E + +AL S V D P Y A + RTD GV
Sbjct: 3 AFRIAYDGTGYYGFQRQPDVSTVEDTIFDAL-RSLDVLAPDADKPAGY--AAAGRTDAGV 59
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL-- 179
SA+ Q ++ P L R LN+ LP +R + + V SF+A +R Y Y L
Sbjct: 60 SALAQTIT---LEGPAWLTPRALNAELPAAVRAWAFADVDDSFHATHDATRRTYTYHLYA 116
Query: 180 PVFALDSSS 188
P DSS+
Sbjct: 117 PAAVDDSSA 125
>gi|396082522|gb|AFN84131.1| tRNA pseudouridine synthase A [Encephalitozoon romaleae SJ-2008]
Length = 312
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 26/143 (18%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+R +A+ +Y G GY G+ G KTI G+LE AL +G + E+ + RT
Sbjct: 35 QRTVALKISYNGEGYSGVSPQNGRKTIGGNLEYALKATG-LGEK---------LVYAGRT 84
Query: 119 DKGVSAVGQVVSG-----------RFCIDPPGLVER-----LNSNLPTQIRIFGYKRVTA 162
D GVSA+ V SG + I E LN+ LP+ IR+ G+ V
Sbjct: 85 DSGVSAINMVASGVVISRVLEPNRSYVITKDDHKEYKYDIMLNNYLPSDIRVIGWAPVPD 144
Query: 163 SFNAKKFCDQRRYVYLLPVFALD 185
+FNA+ C QR+Y Y LD
Sbjct: 145 TFNARFTCIQRQYRYYFHKEGLD 167
>gi|334188023|ref|NP_001190423.1| tRNA pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|332006581|gb|AED93964.1| tRNA pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 471
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERD------RGNPRRYD 111
+R I +Y G + G QK P T++G +E++L G V ER + P
Sbjct: 91 ERVNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKSL--GGFVDERKAQLLKKKCKPLEGR 148
Query: 112 WARSARTDKGVSAVGQVVS---GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
+ RTDKGVSA+ QV S R I+P + + +N + ++R+ +V+ SF+
Sbjct: 149 VLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIEDAINKDASGKLRVVSISKVSRSFHPNF 208
Query: 169 FCDQRRYVYLLPV 181
RRY+Y+ P+
Sbjct: 209 SAKWRRYLYIFPL 221
>gi|66361768|ref|XP_627406.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium
parvum Iowa II]
gi|46228868|gb|EAK89738.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium
parvum Iowa II]
Length = 283
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 15/123 (12%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
IFF G+ +Q K P TIEG++ +AL + + D D R RTD+GV
Sbjct: 2 IFFQ--GIAFQKDDKIP---TIEGEIYKALLQLRLIKDIDSC-----DLVRCGRTDRGVH 51
Query: 124 AVGQVVSGRF-----CIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
+ G +S ++P +E LN LP IR+ GY V F+A+ C+ R Y Y
Sbjct: 52 SAGNYISVNLRTRAKNLEPYNYMEMLNGVLPWDIRVIGYCEVRPDFSARFDCEYRLYKYF 111
Query: 179 LPV 181
P+
Sbjct: 112 FPL 114
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 351 KHYVGSHNFHNFTTR--TKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQI 408
K ++G+H++ F ++ + R I F + V E F + G +F+ HQ+
Sbjct: 140 KQFLGTHDYRRFCKMDLKNRKNQTYIRTIYEFDINFVD--ENRTFAVATIKGSAFLWHQV 197
Query: 409 RKMIGLAVAVVRNCAPQSLIETAL----QKDV-NINVPTAPEVGLYLDECIFASYN 459
R M+G+ + + +I L QK++ ++ A E+GL L +C+F Y+
Sbjct: 198 RLMMGILFEIGQQKFNPEVITQMLTDVEQKNIAELSFQMATELGLVLWDCVFKEYD 253
>gi|392944788|ref|ZP_10310430.1| pseudouridylate synthase I [Frankia sp. QA3]
gi|392288082|gb|EIV94106.1| pseudouridylate synthase I [Frankia sp. QA3]
Length = 298
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ + AY G + G + PG +T++GD+E+AL + + RTD
Sbjct: 31 RLRLDIAYDGTPFAGWARQPGQRTVQGDVEDALIRVARLPA--------VRLTVAGRTDS 82
Query: 121 GVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A GQV D P GL RLN L +R+ G A F+A+ RRYVY
Sbjct: 83 GVHAAGQVAHVDLPADVPLGGLARRLNGVLDRSVRVTGLAPAPAGFDARFSALSRRYVY 141
>gi|307212020|gb|EFN87913.1| tRNA pseudouridine synthase 3 [Harpegnathos saltator]
Length = 368
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 19/142 (13%)
Query: 57 CKRRKIAIFFAYCGVGYQG--MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
C +R I + Y G Y G +Q++ A TIE L AL S + R+ N + R
Sbjct: 14 CHKRHILLKLYYLGWNYDGFTVQEDSNA-TIEHHLFAALTKSCCIESRETSN-----YHR 67
Query: 115 SARTDKGVSAVGQVVSG--RFCIDPPG---------LVERLNSNLPTQIRIFGYKRVTAS 163
RTDKGVS+ QV+S R ++P + LN LPT IR + +++
Sbjct: 68 CGRTDKGVSSFCQVISLDIRSKLEPEQQSNLSKELPYCKILNKLLPTNIRCIAWCPISSD 127
Query: 164 FNAKKFCDQRRYVYLLPVFALD 185
F+A+ C R+Y Y P LD
Sbjct: 128 FSARFDCKYRKYKYFFPRGNLD 149
>gi|118594739|ref|ZP_01552086.1| tRNA pseudouridine synthase A [Methylophilales bacterium HTCC2181]
gi|118440517|gb|EAV47144.1| tRNA pseudouridine synthase A [Methylophilales bacterium HTCC2181]
Length = 264
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+IA +Y G G+ G QK P KTI+G +E AL +E + + S RTD
Sbjct: 2 RIACSVSYNGYGFSGWQKQPDVKTIQGLIESAL------TEIAKDTVITH---ASGRTDS 52
Query: 121 GVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A+GQ++ + P V+ +N+ LP+ I++ K ++ SF+A+ +R Y YL
Sbjct: 53 GVHALGQIIHFDTTKNRPLTAWVKGVNAFLPSSIKVRWAKNISESFHARHSVLEREYQYL 112
Query: 179 L 179
L
Sbjct: 113 L 113
>gi|134056983|emb|CAK44330.1| unnamed protein product [Aspergillus niger]
Length = 517
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDW-----AR 114
R IA+ FAY G Y G++ G T +EE ++ A+ + P +W ++
Sbjct: 107 RFIALKFAYLGQRYNGLEHANGNATPLPTIEEEMYK--ALRKTRETKPYYINWDGCEYSK 164
Query: 115 SARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGY-KRVTASFNAKKFCDQR 173
+ RTD+GVSA GQV+ R + P V LN LP IR+ + R F+A+ C +R
Sbjct: 165 AGRTDRGVSAFGQVIGIRVRNELP-YVSMLNKVLPEDIRVLAWCPRPPEGFDARFSCGER 223
Query: 174 RYVYLL--PVFA 183
Y Y P F+
Sbjct: 224 HYKYFFTQPAFS 235
>gi|283781972|ref|YP_003372727.1| tRNA pseudouridine synthase A [Pirellula staleyi DSM 6068]
gi|283440425|gb|ADB18867.1| tRNA pseudouridine synthase A [Pirellula staleyi DSM 6068]
Length = 285
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R + AY G + G Q P +T++ +LE+A+ V R + S RTD
Sbjct: 2 RTFKLTLAYDGTNFGGWQWQPNRRTVQDELEKAVETITGVRSR---------FVASGRTD 52
Query: 120 KGVSAVGQVV--SGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A+GQV S IDP GL++ LN+ +P I IF V +F+ + ++RY Y
Sbjct: 53 AGVHALGQVAAFSSETGIDPAGLLKGLNAKVPDDIFIFDVVEVPLAFHPIRDAVRKRYRY 112
Query: 178 LL 179
++
Sbjct: 113 VV 114
>gi|118350997|ref|XP_001008777.1| tRNA pseudouridine synthase A family protein [Tetrahymena
thermophila]
gi|89290544|gb|EAR88532.1| tRNA pseudouridine synthase A family protein [Tetrahymena
thermophila SB210]
Length = 481
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 55 QLCKRRKIAIFFAYCGVGYQGM-QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWA 113
++ +++ A+ +Y G+ YQG+ + T+E L +AL + + RD N +
Sbjct: 107 EIYQQQHYALKMSYVGINYQGLAYQQETDNTVEEQLFKALEKTTLIKNRDNCN-----FT 161
Query: 114 RSARTDKGVSAVGQV--VSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCD 171
RS RTDKGVSA+GQV ++ R I ++ ++ IRI G +V +FNA+ C
Sbjct: 162 RSGRTDKGVSALGQVIGITLRTSIKIGENIDEIDD-----IRILGCSKVDPAFNARFDCQ 216
Query: 172 QRRYVYLLPVFALDSSSHRDRESVMASLG 200
+R Y Y F R +E+ LG
Sbjct: 217 KRIYKYYF--FENQMDIQRMKEAANLFLG 243
>gi|386002925|ref|YP_005921224.1| tRNA pseudouridine synthase A [Methanosaeta harundinacea 6Ac]
gi|357210981|gb|AET65601.1| tRNA pseudouridine synthase A [Methanosaeta harundinacea 6Ac]
Length = 269
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 15/135 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
K+A Y G GY G Q P A T++ + AL G N + +A RTD+
Sbjct: 2 KVAFKLGYLGRGYHGFQLQPAAPTVQAVVGRALRSLGI-------NDGSFCYA--GRTDR 52
Query: 121 GVSAVGQVVSGRFCIDPP----GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
GVSA+GQV+ F + P + +NS LPT + + + V +F+A+ R Y
Sbjct: 53 GVSALGQVID--FYVQPAKADLAVPRVVNSRLPTDVWAWAWAPVPENFSARHAALWREYR 110
Query: 177 YLLPVFALDSSSHRD 191
Y LP LD + R+
Sbjct: 111 YHLPGGGLDLEAMRE 125
>gi|284929586|ref|YP_003422108.1| pseudouridylate synthase I [cyanobacterium UCYN-A]
gi|284810030|gb|ADB95727.1| pseudouridylate synthase I [cyanobacterium UCYN-A]
Length = 281
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 50 STTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRR 109
ST+ +Q +++IA+ Y G + G Q+ P +T++ D+E + S G
Sbjct: 2 STSHKQSQSKKRIALIIQYSGNRFHGWQRQPYRRTVQADIENTITKSLGYKVSIHG---- 57
Query: 110 YDWARSARTDKGVSAVGQVVSGRFC--IDPPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
+ RTD GV A GQV + I P L LN LP I I K V+ +++A+
Sbjct: 58 -----AGRTDAGVHATGQVAHFDYAGPIPPKSLARVLNRYLPEDILIRNSKEVSINWHAR 112
Query: 168 KFCDQRRYVYLL 179
RRY Y L
Sbjct: 113 FSAQWRRYRYTL 124
>gi|261328820|emb|CBH11798.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 458
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 65/135 (48%), Gaps = 24/135 (17%)
Query: 60 RKIAIFFAYCGVGYQGMQKNP-GAKTIEGDLEEALFHSGAVSERDR----GNPRRYDWAR 114
RKIA+ AY G Y G+ + T+E L AL ER R P+ D++R
Sbjct: 55 RKIALRLAYHGHIYCGLVRQAETPNTVEAYLVAAL-------ERLRFVEPSGPK--DFSR 105
Query: 115 SARTDKGVSAVGQVVS-----GRFCID-----PPGLVERLNSNLPTQIRIFGYKRVTASF 164
RTDKGVSA+G VVS + D P E+LN+ LP IRI G+ V A F
Sbjct: 106 CGRTDKGVSALGNVVSFTSRASSWATDEHQQPPLDYCEKLNNVLPPTIRIVGWSYVNADF 165
Query: 165 NAKKFCDQRRYVYLL 179
+A+ C R Y Y
Sbjct: 166 DARFSCTGRTYRYYF 180
>gi|342215554|ref|ZP_08708201.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 375
str. F0436]
gi|341586444|gb|EGS29844.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 375
str. F0436]
Length = 245
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R + + AY G Y G Q PG KT+EG ++EAL + + E D + RTD
Sbjct: 3 RNLKLTLAYDGTNYHGYQDQPGLKTVEGKVKEAL-EATFLQE--------IDLKSAGRTD 53
Query: 120 KGVSAVGQVVSGRF--CIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
KGV + GQVV+ + ID L +N NLP I + G + V F+A+ + Y Y
Sbjct: 54 KGVHSQGQVVNFKVDTSIDLGNLPRVVNFNLPPDISVLGVQVVDDDFHARFSAKAKLYRY 113
Query: 178 LL 179
++
Sbjct: 114 VI 115
>gi|149797294|ref|YP_001294664.1| tRNA-pseudouridine synthase A [Symbiobacterium thermophilum IAM
14863]
Length = 267
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 60/122 (49%), Gaps = 13/122 (10%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R I + AY G Y G Q+ P TI+ LEEAL AV+ G P A + RTD
Sbjct: 2 RTIKLILAYDGTAYAGFQRQPNGITIQQRLEEAL---RAVT----GEPDLRIGAAAGRTD 54
Query: 120 KGVSAVGQVVSGRFCIDPPGLVER----LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
GV A GQVV R P ++R LN +LP I + G + F+A+ + ++RY
Sbjct: 55 AGVHARGQVVHLRTYATIP--IDRWPAALNGHLPDDIAVIGAEEAPPDFHARYWAREKRY 112
Query: 176 VY 177
Y
Sbjct: 113 RY 114
>gi|392563519|gb|EIW56698.1| tRNA pseudouridine synthase [Trametes versicolor FP-101664 SS1]
Length = 503
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDR-GNPRRYDWARS 115
RRKIA+ F Y G+ Y GM Q++P T+EG L +A+ H+ V DR G W R
Sbjct: 44 RRKIALKFTYNGIHYGGMEFQRDPALPTVEGVLFDAMVHTKLV---DREGGLDGCGWQRC 100
Query: 116 ARTDKGVSAVGQVVS 130
RTDKGVSA GQVVS
Sbjct: 101 GRTDKGVSAGGQVVS 115
>gi|448368394|ref|ZP_21555346.1| tRNA pseudouridine synthase A [Natrialba aegyptia DSM 13077]
gi|445652224|gb|ELZ05124.1| tRNA pseudouridine synthase A [Natrialba aegyptia DSM 13077]
Length = 287
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G Y G Q+ P T+E DL +AL S +V P Y A + RTD GV
Sbjct: 3 AFRLAYDGTAYHGFQRQPDVATVEDDLFDAL-RSLSVLASKADKPAGY--AAAGRTDAGV 59
Query: 123 SAVGQVVSGRFCIDPPGLV--ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
SA+ Q V D P + LNS+LP IR + F+A +R Y Y L
Sbjct: 60 SALAQTV----AFDAPDWLTPRALNSDLPADIRAWAAADAPDEFHATHHARRREYTYQLH 115
Query: 181 VFALDSSSHR 190
D + R
Sbjct: 116 APPADDAPRR 125
>gi|86739325|ref|YP_479725.1| tRNA pseudouridine synthase A [Frankia sp. CcI3]
gi|123737799|sp|Q2JFE6.1|TRUA_FRASC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|86566187|gb|ABD09996.1| tRNA pseudouridine synthase A [Frankia sp. CcI3]
Length = 274
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ + +Y G + G + PG +T++GD+E+AL + + RTD
Sbjct: 7 RLRLDLSYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPA--------VRLTVAGRTDS 58
Query: 121 GVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV AVGQV D P GL RLN L +RI G F+A+ RRYVY
Sbjct: 59 GVHAVGQVAHVDLPDDVPLGGLARRLNGVLDRAVRIIGLAPAPPGFDARFSALSRRYVY 117
>gi|373114780|ref|ZP_09528989.1| tRNA pseudouridine synthase A [Fusobacterium necrophorum subsp.
funduliforme 1_1_36S]
gi|371650960|gb|EHO16396.1| tRNA pseudouridine synthase A [Fusobacterium necrophorum subsp.
funduliforme 1_1_36S]
Length = 132
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R I I + Y G + G Q+ P +T++G++E++LFH + E + D S RTD
Sbjct: 2 RNIKISYQYDGSSFMGFQRQPNQRTVQGEIEKSLFH--ILRE-------KIDLTSSGRTD 52
Query: 120 KGVSAVGQVVSGRFCIDPPG--LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
+GV A+ QV + ++ P L L+ NLP I + + V + F+A+ R Y Y
Sbjct: 53 RGVHAIQQVSNFFTAVNIPSDRLFYALSRNLPEDILLLQVEEVDSEFHARFSAKTRSYRY 112
>gi|227533991|ref|ZP_03964040.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I)
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
gi|409998256|ref|YP_006752657.1| tRNA pseudouridine synthase A [Lactobacillus casei W56]
gi|227188368|gb|EEI68435.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I)
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
gi|406359268|emb|CCK23538.1| tRNA pseudouridine synthase A [Lactobacillus casei W56]
Length = 254
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 20/131 (15%)
Query: 53 KRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDW 112
+R + K+ + AY G + G Q P +T++G L++AL ++ +G P D
Sbjct: 4 RRDIMTHYKVTL--AYDGTNFAGYQVQPKQRTVQGVLQKAL------TKMTKGQPVHVDG 55
Query: 113 ARSARTDKGVSAVGQVVSGRFCIDPPG------LVERLNSNLPTQIRIFGYKRVTASFNA 166
S RTD GV A+GQV+S D PG +++ +NS +P I I + V A F+A
Sbjct: 56 --SGRTDSGVHALGQVIS----FDYPGNIPAESMLKAMNSLMPLDIEILKAEIVDADFHA 109
Query: 167 KKFCDQRRYVY 177
+ +RY+Y
Sbjct: 110 RYSAKGKRYLY 120
>gi|297805092|ref|XP_002870430.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316266|gb|EFH46689.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 420
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERD------RGNPRRYD 111
+R I +Y G + G QK P T++G +E++L G V +R + P
Sbjct: 91 ERVNFKIVLSYNGTSFDGWQKQPDLHTVQGVVEKSL--GGFVDDRKAQLLKKKCKPLEGR 148
Query: 112 WARSARTDKGVSAVGQVVS---GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
+ RTDKGVSA+ QV S R I+P + + +N + ++R+ +V+ SF+
Sbjct: 149 VLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIEDAINKDASGKLRVVSISKVSRSFHPNF 208
Query: 169 FCDQRRYVYLLPV 181
RRY+Y+ P+
Sbjct: 209 SAKWRRYLYIFPL 221
>gi|255938179|ref|XP_002559860.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584480|emb|CAP92522.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 548
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 64/149 (42%), Gaps = 25/149 (16%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHS-----------------GAVSER 102
R IA+ FAY G Y G++ G T +EE L+ + +ER
Sbjct: 115 RFIALKFAYLGQAYNGLEHTNGNTTPLPTVEEVLWKALRRTRLISPETTSDLEPSDRAER 174
Query: 103 DRGNPRRYDW-----ARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGY 157
P W +++ RTDKGVSA GQV+ R D + LN LP IR+ +
Sbjct: 175 VPMRPYHLYWDGCEYSKAGRTDKGVSAFGQVIGLRVRTDEMNYINVLNRVLPEDIRVLAW 234
Query: 158 -KRVTASFNAKKFCDQRRYVYLL--PVFA 183
F+A+ C +RRY Y P F+
Sbjct: 235 CPNPPPGFDARFSCRERRYKYFFTNPAFS 263
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 351 KHYVGSHNFHNF-TTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIR 409
KH+ GSH+F NF T + + R I + S+ V + + G +F+ HQ+R
Sbjct: 300 KHFEGSHDFRNFCKLDTNKQIDNFERIIHHSISQSIPQVYSFN-----LHGSAFLWHQVR 354
Query: 410 KMIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECIF 455
M+ + V + S++ L N PT A + L L +CIF
Sbjct: 355 HMVAILFLVGQGLESPSIVPELLDVAKNPRKPTYAMADDAPLVLWDCIF 403
>gi|448738119|ref|ZP_21720150.1| tRNA pseudouridine synthase A [Halococcus thailandensis JCM 13552]
gi|445802703|gb|EMA53007.1| tRNA pseudouridine synthase A [Halococcus thailandensis JCM 13552]
Length = 302
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 48 ADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNP 107
+D T R+ R A AY G + G Q+ P T+EG L +AL G + +R P
Sbjct: 24 SDGTKSRRGETRSMRAFRLAYDGRPFHGFQRQPTVPTVEGTLFDALRELGVLDPDER-KP 82
Query: 108 RRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNA 166
Y A + RTD+GVSAV Q + P L R LN LP IR + + T SF+A
Sbjct: 83 SGY--AAAGRTDRGVSAVAQTIG---LAAPEWLTPRALNGVLPGSIRAWAHAD-TESFHA 136
Query: 167 KKFCDQRRYVYLLPVFALDSSSHR 190
R Y Y L A D R
Sbjct: 137 THDAVAREYTYQLHAPAADGERAR 160
>gi|350420811|ref|XP_003492633.1| PREDICTED: tRNA pseudouridine synthase 3-like [Bombus impatiens]
Length = 424
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 57 CKRRKIAIFFAYCGVGYQG-MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
C +R I + F Y G Y G + + TIE L EAL S + R+ N + R
Sbjct: 68 CNKRHILLKFYYLGWNYNGYVVQESTDNTIEEHLFEALIKSCCIESRETSN-----YHRC 122
Query: 116 ARTDKGVSAVGQVVS--GRFCIDPPG---------LVERLNSNLPTQIRIFGYKRVTASF 164
RTDKGVS+ QV+S R ++P + LN LP+ IR + +++F
Sbjct: 123 GRTDKGVSSFSQVISIDLRSKLNPEDQCKLEDELPYCKILNRLLPSNIRCIAWCPASSNF 182
Query: 165 NAKKFCDQRRYVYLLP 180
+A+ C R Y Y P
Sbjct: 183 SARFNCKFRTYKYFFP 198
>gi|72390247|ref|XP_845418.1| pseudouridine synthase A-like protein [Trypanosoma brucei TREU927]
gi|62360588|gb|AAX81000.1| pseudouridine synthase A-like protein, putative [Trypanosoma
brucei]
gi|70801953|gb|AAZ11859.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 428
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 65/135 (48%), Gaps = 24/135 (17%)
Query: 60 RKIAIFFAYCGVGYQGMQKNP-GAKTIEGDLEEALFHSGAVSERDR----GNPRRYDWAR 114
RKIA+ AY G Y G+ + T+E L AL ER R P+ D++R
Sbjct: 25 RKIALRLAYHGHIYCGLVRQAETPNTVEAYLVAAL-------ERLRFVEPSGPK--DFSR 75
Query: 115 SARTDKGVSAVGQVVS-----GRFCID-----PPGLVERLNSNLPTQIRIFGYKRVTASF 164
RTDKGVSA+G VVS + D P E+LN+ LP IRI G+ V A F
Sbjct: 76 CGRTDKGVSALGNVVSFTSRASSWATDEQQQPPLDYCEKLNNVLPPTIRIVGWSYVNADF 135
Query: 165 NAKKFCDQRRYVYLL 179
+A+ C R Y Y
Sbjct: 136 DARFSCTGRTYRYYF 150
>gi|353237530|emb|CCA69501.1| related to DEG1-pseudouridine synthase [Piriformospora indica DSM
11827]
Length = 423
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 82/182 (45%), Gaps = 36/182 (19%)
Query: 55 QLCKRRKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYD 111
Q +RKIA+ F Y G Y G+ Q P T+EG L +AL + + +R+ G D
Sbjct: 46 QAYAQRKIALKFCYHGWDYNGLAYQVTPTPLPTVEGVLFDALCKARLI-DREAGF-EGCD 103
Query: 112 WARSARTDKGVSAVGQVVSGRF-C-------------------------IDPPGL----V 141
W+R RTD+GVS+ GQVV+ R C +PP L +
Sbjct: 104 WSRCGRTDRGVSSAGQVVALRMRCSLRPVETVQPFEEAEVTPPTQPSTKSEPPELEVKYI 163
Query: 142 ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL-PVFALDSSSHRDRESVMASLG 200
+ LN LP IR+ + V +F+A+ C R Y Y P+ S + D+ ASL
Sbjct: 164 QVLNRILPPSIRVLAWAPVDDTFSARFNCRYRHYKYFFQPLNPPASPLNIDKMRNAASLL 223
Query: 201 SG 202
G
Sbjct: 224 VG 225
>gi|340724310|ref|XP_003400525.1| PREDICTED: tRNA pseudouridine synthase 3-like [Bombus terrestris]
Length = 424
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 57 CKRRKIAIFFAYCGVGYQG-MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
C +R I + F Y G Y G + + TIE L EAL S + R+ N + R
Sbjct: 68 CNKRHILLKFYYLGWNYNGFVVQESTDNTIEEHLFEALIKSCCIESRETSN-----YHRC 122
Query: 116 ARTDKGVSAVGQVVS--GRFCIDPPG---------LVERLNSNLPTQIRIFGYKRVTASF 164
RTDKGVS+ QV+S R ++P + LN LP+ IR + +++F
Sbjct: 123 GRTDKGVSSFSQVISIDLRSKLNPEDQCKLEDELPYCKILNRLLPSNIRCIAWCPASSNF 182
Query: 165 NAKKFCDQRRYVYLLP 180
+A+ C R Y Y P
Sbjct: 183 SARFNCKFRTYKYFFP 198
>gi|307177137|gb|EFN66370.1| tRNA pseudouridine synthase 3 [Camponotus floridanus]
Length = 345
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 59 RRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+R I + F Y G Y G + TIE L AL S + R+ N + R R
Sbjct: 16 KRHILLKFYYLGWDYHGFTVQEDNNDTIEHHLFTALLKSCCIESRESAN-----YHRCGR 70
Query: 118 TDKGVSAVGQVVSG--RFCIDPPG---------LVERLNSNLPTQIRIFGYKRVTASFNA 166
TDKGVS+ QV+S R ++P + LN LPT IR + V+ +F+A
Sbjct: 71 TDKGVSSFSQVISLDIRSRLEPENQHNLSEELPYCKILNRLLPTNIRCIAWCPVSPNFSA 130
Query: 167 KKFCDQRRYVYLLPVFALD 185
+ C R Y Y P LD
Sbjct: 131 RFDCKYRTYKYFFPKSNLD 149
>gi|147919589|ref|YP_686671.1| tRNA pseudouridine synthase A [Methanocella arvoryzae MRE50]
gi|121687867|sp|Q0W2P8.1|TRUA_UNCMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|110622067|emb|CAJ37345.1| tRNA pseudouridine synthase [Methanocella arvoryzae MRE50]
Length = 266
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
K A+ AY G + G Q PG T+E +L +AL +GA+ + A + RTD
Sbjct: 2 KTALKIAYVGTNFYGSQAQPGLPTVESELRKALEEAGAIKLGTKI-------AMAGRTDA 54
Query: 121 GVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
GV A+GQVV+ DP R +NS LP + + V F+ ++ R Y Y+L
Sbjct: 55 GVHALGQVVAFEQA-DPKLTAPRIINSKLPKDLWAYARAEVPDDFDPRRHATSREYRYIL 113
Query: 180 PVFALDSSSHRDRESVMASLGS 201
+A D R +E LG+
Sbjct: 114 --YAPDVIERRLKECSSRFLGT 133
>gi|410076082|ref|XP_003955623.1| hypothetical protein KAFR_0B01890 [Kazachstania africana CBS 2517]
gi|372462206|emb|CCF56488.1| hypothetical protein KAFR_0B01890 [Kazachstania africana CBS 2517]
Length = 436
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 21/138 (15%)
Query: 60 RKIAIFFAYCGVGYQGM---QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
R IA+ FAY G Y G+ ++ T+EG + EA+ + P+ Y+++R
Sbjct: 86 RFIALKFAYLGWNYNGLAIQKEVTKLPTVEGTILEAMNKCKLIPSM---VPQEYNFSRCG 142
Query: 117 RTDKGVSAVGQVVSGRF--------CIDPPG------LVERLNSNLPTQIRIFGYK-RVT 161
RTDKGVSA+ QV+S R +DP V LN LP IR+F R
Sbjct: 143 RTDKGVSAMNQVISLRVRSNLTEEEQMDPQNDVREIQYVTILNQLLPADIRVFAVSLRPP 202
Query: 162 ASFNAKKFCDQRRYVYLL 179
F+A+ C R Y Y+
Sbjct: 203 PGFDARFSCKARHYKYIF 220
>gi|209882282|ref|XP_002142578.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris
RN66]
gi|209558184|gb|EEA08229.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris
RN66]
Length = 332
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 67 AYCGVGYQGM-QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
+Y G Y GM +N TIE + A + R+ D R RTDKGV +
Sbjct: 32 SYIGTNYYGMAYQNETIPTIEREFYNACLRLKLIKNREDC-----DLIRCGRTDKGVHST 86
Query: 126 GQVVSGRF---CIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVF 182
G +S P E +N LP IRI G+ +V +F+A+ CD R Y Y+ P+
Sbjct: 87 GNYISINLRTRDTSPYNYQEMINGVLPWDIRILGFCQVNNNFSARFDCDSRVYKYIFPID 146
Query: 183 ALDSSSH 189
+ + H
Sbjct: 147 QIQNFEH 153
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
Query: 347 NRILKHYVGSHNFHNFTTRTKAEDP--SARRYIISFGADSVVN-----------VEGIDF 393
N+ K ++G+H+F F P + R I F + N +
Sbjct: 168 NKSCKQFIGTHDFRVFCKMDIKNRPNQTYVRTIYDFRVEVFNNNKISSSSFDNSINDTKL 227
Query: 394 LKCEVVGQSFMLHQIRKMIGLAVAV----VRNCAPQSLIETALQKDVNINVPTAPEVGLY 449
++G +F+ HQ+R M+G+ + +R+ L++ KD P A E+GL
Sbjct: 228 GVITIIGSAFLWHQVRLMVGILFEISLGKIRSECITKLLDNYFDKDEIPFFPMASEIGLI 287
Query: 450 LDECIFASY 458
L +C F Y
Sbjct: 288 LWDCNFKEY 296
>gi|91773587|ref|YP_566279.1| tRNA pseudouridine synthase A [Methanococcoides burtonii DSM 6242]
gi|121691685|sp|Q12VJ7.1|TRUA_METBU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|91712602|gb|ABE52529.1| tRNA pseudouridine synthase A [Methanococcoides burtonii DSM 6242]
Length = 275
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++A+ AY G + G Q T+EG+L + L G + + PR ++ S RTD
Sbjct: 2 RVALKIAYIGSNFHGSQVQLNDPTVEGELFKVLKELGIMED-----PRTANFISSGRTDS 56
Query: 121 GVSAVGQVVSGRFCIDPPGLV--ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A+GQVV+ F D P L +NS LP I + + V +F+ ++ R Y Y+
Sbjct: 57 GVHAMGQVVA--FDTDAPNLAMPRVINSKLPGTIWAWAHAIVPENFDPRRHALSRSYRYI 114
Query: 179 L 179
L
Sbjct: 115 L 115
>gi|448493615|ref|ZP_21609127.1| tRNA pseudouridine synthase A [Halorubrum californiensis DSM 19288]
gi|445690170|gb|ELZ42390.1| tRNA pseudouridine synthase A [Halorubrum californiensis DSM 19288]
Length = 316
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERD---RGNPRRYDWARSARTD 119
A AY G Y G Q+ P A T+ L EAL G V D P Y A + RTD
Sbjct: 14 AFRVAYDGREYAGFQRQPHAHTVADALLEALAEHGVVERGDGSTHATPPGY--AAAGRTD 71
Query: 120 KGVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GVSAV Q V+ PP L R N +LP +R++ V F+A +R Y Y
Sbjct: 72 AGVSAVAQTVA---FETPPWLTPRAFNGHLPGSVRVWAAADVEGGFHATHDAVRRTYRYH 128
Query: 179 LPVFALDS 186
L A D
Sbjct: 129 LYAPAADG 136
>gi|380027544|ref|XP_003697482.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Apis florea]
Length = 400
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 59/136 (43%), Gaps = 17/136 (12%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAK-TIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
C +R I + F Y G Y G TIE L EAL S + R+ N + R
Sbjct: 69 CNKRHILLKFYYLGWNYNGFVVQESINNTIEEHLFEALIKSCCIESRETSN-----YHRC 123
Query: 116 ARTDKGVSAVGQVVSG--RFCIDPPG---------LVERLNSNLPTQIRIFGYKRVTASF 164
RTDKGVS+ QV+S R ++P + LN LP+ IR + V F
Sbjct: 124 GRTDKGVSSFSQVISLDIRSKLNPEDQYKLEDELPYCKMLNRLLPSNIRCIAWCPVPNDF 183
Query: 165 NAKKFCDQRRYVYLLP 180
+A+ C R Y Y P
Sbjct: 184 SARFNCKFRTYKYFFP 199
>gi|339243255|ref|XP_003377553.1| putative tRNA pseudouridine synthase tag-124 [Trichinella spiralis]
gi|316973638|gb|EFV57202.1| putative tRNA pseudouridine synthase tag-124 [Trichinella spiralis]
Length = 471
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 67/158 (42%), Gaps = 36/158 (22%)
Query: 59 RRKIAIFFAYCGVGYQGM-QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
RR IA+ AY G G +N T+E + +AL + + + N ++R R
Sbjct: 36 RRHIALMVAYLGWDLDGFCAQNNSQNTVESKIFKALIETKLIQSLETAN-----YSRCGR 90
Query: 118 TDKGVSAVGQVVS-----------GRF-----CIDPPGLVER--------------LNSN 147
TDK VSA QV+S G F C + P R LNS
Sbjct: 91 TDKTVSAFSQVLSLDVRSNQTTGVGVFEPDGYCPNEPKPTSRKTTPKSEELDYAKILNSV 150
Query: 148 LPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
LP +IR+ + V +FNA+ C R+Y Y P AL+
Sbjct: 151 LPQEIRVLAWAPVERTFNARYNCTSRQYKYFFPKGALN 188
>gi|448361248|ref|ZP_21549869.1| tRNA pseudouridine synthase A [Natrialba asiatica DSM 12278]
gi|445651058|gb|ELZ03968.1| tRNA pseudouridine synthase A [Natrialba asiatica DSM 12278]
Length = 287
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G Y G Q+ P T+E +L AL S +V D P Y A + RTD GV
Sbjct: 3 AFRLAYDGTAYHGFQRQPDVATVEDELFAAL-ESLSVLATDADKPAGY--AAAGRTDAGV 59
Query: 123 SAVGQVVSGRFCIDPPGLV--ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
SA+ Q V+ D P + LNS+LP IR + F+A +R Y Y L
Sbjct: 60 SALAQTVA----FDAPDWLTPRALNSDLPADIRAWAAADAPDEFHATHHARRREYTYQLY 115
Query: 181 VFALDSSSHR 190
D + R
Sbjct: 116 APPADDAPRR 125
>gi|302309334|ref|NP_986663.2| AGL003Wp [Ashbya gossypii ATCC 10895]
gi|299788309|gb|AAS54487.2| AGL003Wp [Ashbya gossypii ATCC 10895]
gi|374109914|gb|AEY98819.1| FAGL003Wp [Ashbya gossypii FDAG1]
Length = 432
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 67/146 (45%), Gaps = 21/146 (14%)
Query: 60 RKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
R IA+ FAY G Y G+ QK+P T+EG + EA+ V P+ Y ++R
Sbjct: 82 RFIALKFAYLGWNYNGLAIQKDPTPLPTVEGTILEAMNKCRMVPSM---VPQDYKFSRCG 138
Query: 117 RTDKGVSAVGQVVSGRFCI--------DPPG------LVERLNSNLPTQIRIFGY-KRVT 161
RTDKGVSA+ QV+S R DP + LN LP IRI R
Sbjct: 139 RTDKGVSAMNQVISLRVRSNLTPQEQEDPANDAREIPYIHILNQLLPDDIRISAICLRPP 198
Query: 162 ASFNAKKFCDQRRYVYLLPVFALDSS 187
F+A+ C R Y YL LD S
Sbjct: 199 KGFDARFSCKYRHYKYLFNKSGLDLS 224
>gi|403333890|gb|EJY66077.1| Pseudouridine synthase [Oxytricha trifallax]
Length = 502
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 8/165 (4%)
Query: 39 RDLIPAAAGADSTTKRQLCKR--RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHS 96
R+ A D ++QL K R + + G Y+G G KT+EG L +A S
Sbjct: 28 RNFSLAFTDIDGIVEQQLRKTDWRNFLFIYGFDGSKYEGSTYTGGMKTVEGGLLDAFVKS 87
Query: 97 GAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCI--DPPGLVERLNSNLPTQIRI 154
G + + + G + + +R++R DK VSA+ V+ R I P + + + LP I +
Sbjct: 88 GLLKKENIGES-KLELSRTSRVDKHVSALSCVLRARMPIKYSPEKIAQMIEPFLPDDIFL 146
Query: 155 FGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASL 199
++ + K+ ++R Y Y LP F L S D+ M +L
Sbjct: 147 HEIQKTDNRGDIKEQVEKRLYYYYLPTFCLFSP---DQHKQMQNL 188
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 18/121 (14%)
Query: 359 FHNFTTRTKA--------EDPSARRYIISFGADSVV----------NVEGIDFLKCEVVG 400
+HNF ++ A S R I F D ++ +V+ I F++ + G
Sbjct: 261 YHNFISQKHAGAYRNKQVAFQSNFRKIDKFEIDQLITLPHSINPNLDVQPIQFVRFNIEG 320
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNK 460
QSF L QIR MI + + L++ + K AP G+ L E +F +
Sbjct: 321 QSFGLQQIRNMIASVMEIYSAQGSLELLQQSFDKKNVKKFIKAPSQGIMLREAVFQKIQR 380
Query: 461 K 461
K
Sbjct: 381 K 381
>gi|366087906|ref|ZP_09454391.1| tRNA pseudouridine synthase A [Lactobacillus zeae KCTC 3804]
Length = 247
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 66 FAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
AY G + G Q P +T++G L++AL ++ +G P D S RTD GV A+
Sbjct: 8 LAYDGTNFAGYQVQPKQRTVQGVLQKAL------TKMTKGQPVHVDG--SGRTDSGVHAL 59
Query: 126 GQVVSGRFCIDPPG------LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GQV+S D PG ++ +NS +P I I + V A F+A+ +RY+Y
Sbjct: 60 GQVIS----FDYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKRYMY 113
>gi|302837035|ref|XP_002950077.1| hypothetical protein VOLCADRAFT_90550 [Volvox carteri f.
nagariensis]
gi|300264550|gb|EFJ48745.1| hypothetical protein VOLCADRAFT_90550 [Volvox carteri f.
nagariensis]
Length = 738
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 375 RYIISF-GADSVVNVEG-IDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETAL 432
R I F AD VEG L EV GQSFMLH IR MIG AVAV P+ ++ +L
Sbjct: 538 RRIHHFTAADPRPLVEGGTPCLLLEVRGQSFMLHHIRHMIGGAVAVALGLMPKDVLLGSL 597
Query: 433 QKDVNINVPTAPEVGLYLDECIFASYNKK 461
+ + +P AP L L +C F + ++
Sbjct: 598 EPPARVAIPRAPPHTLLLADCTFGRFPQQ 626
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 21/156 (13%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+R +AI Y G GY+ LEE +G+ R G+ + R
Sbjct: 81 KRSVAIHTGYVGTGYKA-----------AFLEE----TGSSINRTLGDDVTIEQVMGLRM 125
Query: 119 DKGVSAVGQVVSGRFCIDPPGLV--ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
S V+G D GLV + +N +LP+QIR+F ++ F+A+ C++R Y
Sbjct: 126 LVDESC---YVAGGPGADTEGLVLADSINRHLPSQIRVFTVQKTNKKFSARHMCEERVYQ 182
Query: 177 YLLPVFALDSSSHRDRESVMASLGSGNELVKCLECS 212
Y LP +D E A L + + C + S
Sbjct: 183 YYLPASMIDLKCDGGEEDA-AKLAVFRDALSCFQVS 217
>gi|116495915|ref|YP_807649.1| tRNA pseudouridine synthase A [Lactobacillus casei ATCC 334]
gi|418003253|ref|ZP_12643344.1| tRNA pseudouridine synthase A [Lactobacillus casei UCD174]
gi|122262685|sp|Q035B5.1|TRUA_LACC3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|116106065|gb|ABJ71207.1| Pseudouridylate synthase [Lactobacillus casei ATCC 334]
gi|410542630|gb|EKQ17065.1| tRNA pseudouridine synthase A [Lactobacillus casei UCD174]
Length = 247
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 18/118 (15%)
Query: 66 FAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
AY G + G Q P +T++G L++AL ++ +G P D S RTD GV A+
Sbjct: 8 LAYDGTNFAGYQVQPKQRTVQGVLQKAL------TKMTKGQPVHVDG--SGRTDSGVHAL 59
Query: 126 GQVVSGRFCIDPPG------LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GQV+S D PG +++ +NS +P I I + V A F+A+ +RY+Y
Sbjct: 60 GQVIS----FDYPGNIPAESMLKAMNSLMPLDIEILKAEIVDADFHARYSAKGKRYLY 113
>gi|191639397|ref|YP_001988563.1| tRNA pseudouridine synthase A [Lactobacillus casei BL23]
gi|239630320|ref|ZP_04673351.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|301067471|ref|YP_003789494.1| pseudouridylate synthase [Lactobacillus casei str. Zhang]
gi|385821158|ref|YP_005857545.1| tRNA pseudouridine synthase A 1 [Lactobacillus casei LC2W]
gi|385824349|ref|YP_005860691.1| tRNA pseudouridine synthase A 1 [Lactobacillus casei BD-II]
gi|417981659|ref|ZP_12622324.1| tRNA pseudouridine synthase A [Lactobacillus casei 12A]
gi|417984476|ref|ZP_12625098.1| tRNA pseudouridine synthase A [Lactobacillus casei 21/1]
gi|417987733|ref|ZP_12628287.1| tRNA pseudouridine synthase A [Lactobacillus casei 32G]
gi|417990770|ref|ZP_12631235.1| tRNA pseudouridine synthase A [Lactobacillus casei A2-362]
gi|417995392|ref|ZP_12635685.1| tRNA pseudouridine synthase A [Lactobacillus casei M36]
gi|418000114|ref|ZP_12640312.1| tRNA pseudouridine synthase A [Lactobacillus casei T71499]
gi|418006288|ref|ZP_12646247.1| tRNA pseudouridine synthase A [Lactobacillus casei UW1]
gi|418008986|ref|ZP_12648830.1| tRNA pseudouridine synthase A [Lactobacillus casei UW4]
gi|418011856|ref|ZP_12651605.1| tRNA pseudouridine synthase A [Lactobacillus casei Lc-10]
gi|418014954|ref|ZP_12654538.1| tRNA pseudouridine synthase A [Lactobacillus casei Lpc-37]
gi|238693010|sp|B3WAI6.1|TRUA_LACCB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|190713699|emb|CAQ67705.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Lactobacillus casei BL23]
gi|239527932|gb|EEQ66933.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|300439878|gb|ADK19644.1| Pseudouridylate synthase [Lactobacillus casei str. Zhang]
gi|327383485|gb|AEA54961.1| tRNA pseudouridine synthase A 1 [Lactobacillus casei LC2W]
gi|327386676|gb|AEA58150.1| tRNA pseudouridine synthase A 1 [Lactobacillus casei BD-II]
gi|410521798|gb|EKP96756.1| tRNA pseudouridine synthase A [Lactobacillus casei 12A]
gi|410522555|gb|EKP97499.1| tRNA pseudouridine synthase A [Lactobacillus casei 32G]
gi|410525270|gb|EKQ00173.1| tRNA pseudouridine synthase A [Lactobacillus casei 21/1]
gi|410533628|gb|EKQ08296.1| tRNA pseudouridine synthase A [Lactobacillus casei A2-362]
gi|410537360|gb|EKQ11935.1| tRNA pseudouridine synthase A [Lactobacillus casei T71499]
gi|410537529|gb|EKQ12102.1| tRNA pseudouridine synthase A [Lactobacillus casei M36]
gi|410544212|gb|EKQ18548.1| tRNA pseudouridine synthase A [Lactobacillus casei UW1]
gi|410544899|gb|EKQ19209.1| tRNA pseudouridine synthase A [Lactobacillus casei UW4]
gi|410551472|gb|EKQ25530.1| tRNA pseudouridine synthase A [Lactobacillus casei Lc-10]
gi|410552476|gb|EKQ26500.1| tRNA pseudouridine synthase A [Lactobacillus casei Lpc-37]
Length = 247
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 18/118 (15%)
Query: 66 FAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
AY G + G Q P +T++G L++AL ++ +G P D S RTD GV A+
Sbjct: 8 LAYDGTNFAGYQVQPKQRTVQGVLQKAL------TKMTKGQPVHVDG--SGRTDSGVHAL 59
Query: 126 GQVVSGRFCIDPPG------LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GQV+S D PG +++ +NS +P I I + V A F+A+ +RY+Y
Sbjct: 60 GQVIS----FDYPGNIPAESMLKAMNSLMPLDIEILKAEIVDADFHARYSAKGKRYLY 113
>gi|83409929|emb|CAI64350.1| tRNA pseudouridine synthase A [uncultured archaeon]
Length = 276
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+IA+ AY G Y G Q P TIE +L L ++ +P+ + S RTD
Sbjct: 2 RIALKIAYIGTEYHGYQIQPDVPTIEKELFRTLEELKIIT-----DPKSARYIGSGRTDA 56
Query: 121 GVSAVGQVVSGRFCIDPPGL-VER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV+A+GQVV+ F D P L + R +NS LP I ++ V F+ ++ R Y Y
Sbjct: 57 GVNALGQVVA--FNTDNPKLAIPRVINSKLPPSIWVWSRAEVPDDFDPRRHAVSREYKYF 114
Query: 179 L 179
+
Sbjct: 115 V 115
>gi|288919692|ref|ZP_06414019.1| tRNA pseudouridine synthase A [Frankia sp. EUN1f]
gi|288348881|gb|EFC83131.1| tRNA pseudouridine synthase A [Frankia sp. EUN1f]
Length = 275
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G + G + PG +T++GD+E+AL + + RTD GV A+G
Sbjct: 15 AYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPA--------VRLTVAGRTDSGVHAIG 66
Query: 127 QVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
QV P GL RLN L +R+ G A F+A+ RRYVY
Sbjct: 67 QVAHVDLPTGTPVGGLARRLNGVLDRAVRVKGLAPAPAGFDARFSALSRRYVY 119
>gi|73668859|ref|YP_304874.1| tRNA pseudouridine synthase A [Methanosarcina barkeri str. Fusaro]
gi|121729516|sp|Q46CU8.1|TRUA_METBF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|72396021|gb|AAZ70294.1| pseudouridylate synthase [Methanosarcina barkeri str. Fusaro]
Length = 269
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++A+ AY G + G Q P +T+EG+L +AL + G + +P+ ++ + RTD
Sbjct: 2 RVALKLAYIGTEFHGSQIQPNVETVEGELFKALRNLGIIE-----SPKSANYTCAGRTDA 56
Query: 121 GVSAVGQVVSGRFCIDPPGLV--ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A+ QVV+ F D L +NS L I ++ + V SF+A++ R Y Y+
Sbjct: 57 GVHALEQVVA--FDTDKLNLAIPRVINSELTPGIWVWAHAEVPLSFDARRDAVSRHYRYV 114
Query: 179 LPVFALDSSSHRD 191
+ D S R+
Sbjct: 115 MSGKEYDISKIRE 127
>gi|156844606|ref|XP_001645365.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM
70294]
gi|156116026|gb|EDO17507.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM
70294]
Length = 446
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 67/144 (46%), Gaps = 21/144 (14%)
Query: 60 RKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
R IA+ FAY G Y G+ QK P T+EG + EA+ V NP+ Y ++R
Sbjct: 95 RFIALKFAYLGWNYNGLAIQKEPTPLPTVEGVILEAMNKCRLVPSM---NPQDYKFSRCG 151
Query: 117 RTDKGVSAVGQVVS--GRFCIDPP------------GLVERLNSNLPTQIRIFGY-KRVT 161
RTDKGVSA+ QV+S R + P V+ LN LP IR+ R
Sbjct: 152 RTDKGVSAMSQVISLKVRSNLTPEEQANSDNDSKEIQYVDILNQLLPDDIRVSAVCLRPP 211
Query: 162 ASFNAKKFCDQRRYVYLLPVFALD 185
F+A+ C R Y YL LD
Sbjct: 212 KDFDARFSCKHRHYKYLFNKEGLD 235
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 351 KHYVGSHNFHNFTTRTKAED-PSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIR 409
K+Y G ++F NF ++ + +R IIS S+++V G DF +++G +F+ HQ+R
Sbjct: 244 KYYEGENDFRNFCKLDGSKQITNYKRTIIS---ASIMHVSG-DFYCFDLIGSAFLWHQVR 299
Query: 410 KMIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECIFASYNKKWKD 464
M+ V + +LI+ L + P A +V L L +C F + +WK+
Sbjct: 300 CMMANLFLVGQGLEDHTLIKDMLDIEKTPRKPIYDMASDVPLILYDCKFE--DMEWKE 355
>gi|406603476|emb|CCH45032.1| putative tRNA pseudouridine synthase [Wickerhamomyces ciferrii]
Length = 412
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 60 RKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
R IA+ F+Y G Y G+ QK P T+EG + EAL + + GN ++++R
Sbjct: 59 RFIALKFSYLGWNYNGLAIQKEPTPLPTVEGTIIEALNKCKLIPSLNPGN---FNFSRCG 115
Query: 117 RTDKGVSAVGQVVSGRF--------CIDPP------GLVERLNSNLPTQIRIFGYK-RVT 161
RTDKGVSA+ QV+S + +DP + LN LP+ I+I R
Sbjct: 116 RTDKGVSALNQVISLKVRSNLTPEEQLDPNLDSKEFDYINILNGILPSDIKIHEISLRPP 175
Query: 162 ASFNAKKFCDQRRYVYLLPVFALD 185
F+A+ C R Y YL LD
Sbjct: 176 QGFDARFSCTSRHYKYLFHQQGLD 199
>gi|225718836|gb|ACO15264.1| tRNA pseudouridine synthase 3 [Caligus clemensi]
Length = 423
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 76/173 (43%), Gaps = 33/173 (19%)
Query: 56 LCKRRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
L K+RK+ + Y G Y G + TIEG L AL + + R+ N + R
Sbjct: 56 LYKQRKVLLQICYFGWSYHGFAVQEDSPMTIEGHLFNALSRTCLIRSRETSN-----YHR 110
Query: 115 SARTDKGVSAVGQVVSGRF---CIDPPGLVER----------------------LNSNLP 149
RTDKGVSA QVVS ++ PG+ + LNSNLP
Sbjct: 111 CGRTDKGVSAFRQVVSIELRSNLLEGPGVFDYPECRAHSRPNPTTNEEIDYCKILNSNLP 170
Query: 150 TQIRIFGYKRVT-ASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGS 201
I++ + +T F+A+ C R Y Y+ P+ A S R +E+ LGS
Sbjct: 171 PDIQVIAWAPLTNRDFSARFDCKIREYKYIFPLGAARDLS-RIQEAGAKLLGS 222
>gi|281200681|gb|EFA74899.1| tRNA pseudouridylate synthase [Polysphondylium pallidum PN500]
Length = 1052
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 65/157 (41%), Gaps = 36/157 (22%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
C +R IA+ AY G Y G + +TIEG L AL + +++ N +Y A S
Sbjct: 764 CYKRYIALKVAYLGWDYHGFAAQQITEETIEGHLIRALQKTCLINDIKNCNYSKY--ALS 821
Query: 116 ARTDKGVSAVGQVVS---------GRFCIDPPGL------------------------VE 142
RTDKGVSA GQV+S G I P + V+
Sbjct: 822 GRTDKGVSAFGQVISLYVRSNLTEGNDLIPPTVIDDEAIAKKKANLLKNKKTHEEFQFVK 881
Query: 143 RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
LN LP IR+ G+ + FNA+ R Y Y
Sbjct: 882 MLNGVLPPYIRVLGWSPIPFHFNARFSTLYRTYKYFF 918
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDF-----LKCEVVGQSFML 405
K Y+G H+F NF S R I+SF VE DF + G +F+
Sbjct: 933 KSYIGEHDFSNFCKIDLESVKSFTRVILSFDIQP---VESGDFSTSGMYVATICGYAFLW 989
Query: 406 HQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDEC 453
HQIR M+ + + + P ++I L I P A EV L L +C
Sbjct: 990 HQIRCMMAMLFLIGQKKFPTTIIADLLDLSKGIVKPPYEMASEVPLVLFDC 1040
>gi|403215491|emb|CCK69990.1| hypothetical protein KNAG_0D02400 [Kazachstania naganishii CBS
8797]
Length = 418
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 69/150 (46%), Gaps = 21/150 (14%)
Query: 60 RKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
R IA+ FAY G Y G+ QK P A T+E + E + V + P Y+++R
Sbjct: 96 RFIALRFAYLGWKYNGLALQKEPTALPTVEETILEVMNKCKLVPSME---PLDYNFSRCG 152
Query: 117 RTDKGVSAVGQVVS--GRFCIDP-----PG-------LVERLNSNLPTQIRIFGY-KRVT 161
RTDKGVSA+ QV+S R + P P V +N LP IR+ R
Sbjct: 153 RTDKGVSAMNQVISLTVRSNLSPEEQRDPANDHQELQYVHMINHLLPDDIRVSAVCLRPP 212
Query: 162 ASFNAKKFCDQRRYVYLLPVFALDSSSHRD 191
A F+A+ C R Y YL LD R+
Sbjct: 213 ADFDARHSCKHRHYRYLFKAEQLDLEKMRE 242
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPS-ARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIR 409
K Y G H+F NF ++ + RR IIS ++ V DF ++VG +F+ HQ+R
Sbjct: 245 KLYEGEHDFRNFCKIDGSKQITNYRRRIIS---GDIIRVNE-DFYCFDLVGTAFLWHQVR 300
Query: 410 KMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIF 455
M+ V + S++ + D+ P A +V L L +C F
Sbjct: 301 CMMACLFLVGQGLEKPSIVTDLMNIDLMPQKPLYDMASDVPLLLYDCKF 349
>gi|158317762|ref|YP_001510270.1| tRNA pseudouridine synthase A [Frankia sp. EAN1pec]
gi|158113167|gb|ABW15364.1| tRNA pseudouridine synthase A [Frankia sp. EAN1pec]
Length = 275
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ + AY G + G + PG +T++GD+E+AL + + RTD
Sbjct: 9 RLRLDLAYDGTAFAGWARQPGQRTVQGDVEDALMRVARLPA--------VRLTVAGRTDS 60
Query: 121 GVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A GQV D P GL RLN L +R+ G F+A+ RRYVY
Sbjct: 61 GVHAAGQVAHVDIPDDTPVGGLARRLNGVLDRAVRVKGLAPAPDGFDARFSALSRRYVY 119
>gi|448454793|ref|ZP_21594273.1| tRNA pseudouridine synthase A [Halorubrum lipolyticum DSM 21995]
gi|445814476|gb|EMA64438.1| tRNA pseudouridine synthase A [Halorubrum lipolyticum DSM 21995]
Length = 292
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 63/136 (46%), Gaps = 15/136 (11%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGN------PRRYDWARSA 116
A AY G Y G Q+ P A T+EG L AL G + DRG+ P Y A +
Sbjct: 11 AFRVAYDGREYAGFQRQPHATTVEGTLLRALAEHGIL---DRGDGPTHATPPGY--AAAG 65
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
RTD GVSAV Q V+ F P L R N +LP +R++ V F+A +R Y
Sbjct: 66 RTDAGVSAVAQTVA--FAA-PDWLTPRAFNGHLPGSVRVWAAADVPDGFHATHDATRRTY 122
Query: 176 VYLLPVFALDSSSHRD 191
Y L A + RD
Sbjct: 123 RYHLYAPARGDGADRD 138
>gi|328777716|ref|XP_393954.4| PREDICTED: tRNA pseudouridine synthase 3-like [Apis mellifera]
Length = 400
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 59/136 (43%), Gaps = 17/136 (12%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
C +R I + F Y G Y G TIE L EAL S + R+ N + R
Sbjct: 52 CNKRHILLKFYYLGWDYNGFVVQESIDNTIEEHLFEALIKSCCIESRETSN-----YHRC 106
Query: 116 ARTDKGVSAVGQVVSG--RFCIDPPG---------LVERLNSNLPTQIRIFGYKRVTASF 164
RTDKGVS+ QV+S R ++P + LN LP+ IR + V F
Sbjct: 107 GRTDKGVSSFSQVISLDIRSKLNPEDQYKLEDELPYCKILNRLLPSNIRCIAWCPVPNDF 166
Query: 165 NAKKFCDQRRYVYLLP 180
+A+ C R Y Y P
Sbjct: 167 SARFNCKFRTYKYFFP 182
>gi|71665382|ref|XP_819661.1| pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70884973|gb|EAN97810.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi]
Length = 429
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 60 RKIAIFFAYCGVGYQGMQKNP-GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
RK+AI AY G Y G+ K + T+E + AL H + + P D AR RT
Sbjct: 40 RKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQ---DGP--IDLARCGRT 94
Query: 119 DKGVSAVGQVVS-----GRFCIDPP-----GLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
DKGVSA+G V S + D P LNS LP IRI G+ V +F+A+
Sbjct: 95 DKGVSALGNVFSLTVRASSWPTDSPQKPALDYCAMLNSALPVTIRIVGWAYVDDTFDARF 154
Query: 169 FCDQRRYVYLL 179
C R Y Y
Sbjct: 155 SCVGRTYRYYF 165
>gi|363755522|ref|XP_003647976.1| hypothetical protein Ecym_7325 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892012|gb|AET41159.1| hypothetical protein Ecym_7325 [Eremothecium cymbalariae
DBVPG#7215]
Length = 431
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 64/138 (46%), Gaps = 21/138 (15%)
Query: 60 RKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
R IA+ FAY G Y G+ QK P T+EG + EA+ V P+ Y+++R
Sbjct: 82 RFIALKFAYLGWNYNGLAIQKEPTPLPTVEGTILEAMSKCKLVPSM---VPQDYNFSRCG 138
Query: 117 RTDKGVSAVGQVVS--------GRFCIDPPG------LVERLNSNLPTQIRIFGY-KRVT 161
RTDKGVSA+ QV+S +DP V LN LP IR+ R
Sbjct: 139 RTDKGVSAMNQVISLSVRSNLTAEEQLDPANDSKEIPYVHILNQLLPDDIRVSAVCLRPP 198
Query: 162 ASFNAKKFCDQRRYVYLL 179
F+A+ C R Y YL
Sbjct: 199 EGFDARFSCKYRHYKYLF 216
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
K Y+G H+F NF ++ + + +I + +++++G D +++G +F+ HQ+R
Sbjct: 231 KMYIGEHDFRNFCKLDGSKQITNYKRVIL--SSQILHIDG-DMYCFDLIGSAFLWHQVRC 287
Query: 411 MIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECIFASYNKKWKD 464
M+ + + SLI L P A ++ L L +C F N +W D
Sbjct: 288 MMANLFLIGQELEDISLISNLLSPSKYPQKPIYELASDIPLILYDCKFE--NIEWLD 342
>gi|448398880|ref|ZP_21570235.1| tRNA pseudouridine synthase A [Haloterrigena limicola JCM 13563]
gi|445670353|gb|ELZ22955.1| tRNA pseudouridine synthase A [Haloterrigena limicola JCM 13563]
Length = 279
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G Y G Q+ P T+E + +AL G V E D P Y A + RTD GV
Sbjct: 5 AFRIAYDGTDYYGYQRQPDVPTVEDSIFDALRELG-VLEPDADKPDGY--AAAGRTDAGV 61
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
SA+ Q ++ P L R LN+ LP +R + A F+A +R+Y Y L
Sbjct: 62 SALAQTIA---LEAPDWLTPRALNAELPADVRAWASADAPADFHATHHARRRKYTYQL 116
>gi|341879449|gb|EGT35384.1| hypothetical protein CAEBREN_20868 [Caenorhabditis brenneri]
Length = 413
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 32/165 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM-QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+RKIA F Y G + G+ Q+ A T+E L +AL + + + +++R R
Sbjct: 41 KRKIAFQFYYLGWEHDGLVQQLDTANTVEKHLMDALLKTKMIESWENC-----EFSRCGR 95
Query: 118 TDKGVSAVGQ---VVSGRFCIDPPGL-----------------------VERLNSNLPTQ 151
TDKGVSA Q VV C P + V+ LN LP
Sbjct: 96 TDKGVSAFKQTAAVVVRSTCPQDPDVFWDESTPEDVKNNYKSKPEELPYVKMLNGLLPKT 155
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVM 196
IR+F + V FNA+ C++R Y Y LD R+ S++
Sbjct: 156 IRVFAWAPVKREFNARFDCNRRTYKYSFAKADLDLEKMREAASLL 200
>gi|222480083|ref|YP_002566320.1| tRNA pseudouridine synthase A [Halorubrum lacusprofundi ATCC 49239]
gi|222452985|gb|ACM57250.1| tRNA pseudouridine synthase [Halorubrum lacusprofundi ATCC 49239]
Length = 293
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRY----DWARSART 118
A AY G Y G Q+ P A T+EG L AL G + DRG+ + +A + RT
Sbjct: 10 AFRVAYDGREYAGFQRQPHATTVEGTLLRALAKHGIL---DRGDGPTHATPPGYAAAGRT 66
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
D GVSAV Q V+ P L R N +LP +R++ V A F+A +R Y Y
Sbjct: 67 DAGVSAVAQTVA---FEAPDWLTPRAFNGHLPGSVRVWAAADVPAGFHATHDAVRRTYRY 123
Query: 178 LL 179
L
Sbjct: 124 HL 125
>gi|322435303|ref|YP_004217515.1| tRNA pseudouridine synthase A [Granulicella tundricola MP5ACTX9]
gi|321163030|gb|ADW68735.1| tRNA pseudouridine synthase A [Granulicella tundricola MP5ACTX9]
Length = 258
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R + AY G Y G Q PG T++G L AL + +G S RTD
Sbjct: 2 RYWKMTLAYDGTAYHGWQVQPGLPTVQGRLAAALKLLTGETVLPQG---------SGRTD 52
Query: 120 KGVSAVGQVVSGRFCIDPPG--LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A+GQVVS PG L+ LN LP IR+ + V A F+A++ ++ Y Y
Sbjct: 53 AGVHALGQVVSFGLEAPIPGENLLRALNRALPGAIRVLSVEAVEAEFHARRGAVRKTYEY 112
Query: 178 LL 179
L
Sbjct: 113 RL 114
>gi|340759357|ref|ZP_08695929.1| tRNA pseudouridine synthase A [Fusobacterium varium ATCC 27725]
gi|340577319|gb|EES64092.2| tRNA pseudouridine synthase A [Fusobacterium varium ATCC 27725]
Length = 242
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 15/124 (12%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
+ I I + + G + G Q+ PG +T++G++E+ L V R++ N + RTD
Sbjct: 2 KNIKIRYRFDGSMFYGFQRQPGKRTVQGEIEKLL----EVVLREKVN-----MISAGRTD 52
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERL----NSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
+GV A+ QV F P VE+L N LP I IF + V +FN++ F R Y
Sbjct: 53 RGVHALEQV--SNFFTTSPIPVEKLKYALNKGLPLDIEIFEVEEVDMNFNSRFFAKNRGY 110
Query: 176 VYLL 179
Y++
Sbjct: 111 KYII 114
>gi|341882334|gb|EGT38269.1| hypothetical protein CAEBREN_00927 [Caenorhabditis brenneri]
Length = 413
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 32/165 (19%)
Query: 59 RRKIAIFFAYCGVGYQGM-QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+RKIA F Y G + G+ Q+ A T+E L +AL + + + +++R R
Sbjct: 41 KRKIAFQFYYLGWEHDGLVQQLDTANTVEKHLMDALLKTKMIESWENC-----EFSRCGR 95
Query: 118 TDKGVSAVGQ---VVSGRFCIDPPGL-----------------------VERLNSNLPTQ 151
TDKGVSA Q VV C P + V+ LN LP
Sbjct: 96 TDKGVSAFKQTAAVVVRSTCPQDPDVFWDESTPEDVKNNYKSKPEELPYVKMLNGLLPKT 155
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVM 196
IR+F + V FNA+ C++R Y Y LD R+ S++
Sbjct: 156 IRVFAWAPVKREFNARFDCNRRTYKYSFAKADLDLEKMREAASLL 200
>gi|407852041|gb|EKG05708.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi]
Length = 526
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 60 RKIAIFFAYCGVGYQGMQKNP-GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
RK+AI AY G Y G+ K + T+E + AL H + + P D AR RT
Sbjct: 137 RKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQ---DGP--IDLARCGRT 191
Query: 119 DKGVSAVGQVVS-----GRFCIDPP-----GLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
DKGVSA+G V S + D P LNS LP IRI G+ V +F+A+
Sbjct: 192 DKGVSALGNVFSLTVRASSWPTDSPQKPALDYCAMLNSALPVTIRIVGWAYVDDTFDARF 251
Query: 169 FCDQRRYVYLL 179
C R Y Y
Sbjct: 252 SCVGRTYRYYF 262
>gi|320164169|gb|EFW41068.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 311
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 29/141 (20%)
Query: 353 YVGSHNFHNFTTRTKAEDPSARRYIIS----------------------FGADSVV---- 386
Y GSH FHN+T + + D A R + S AD
Sbjct: 78 YTGSHRFHNYTIKVRINDAQAMRVMQSCTVNDPLLTPIDREWLAANPEPVSADQPAPEGC 137
Query: 387 --NVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAP 444
++ ++ + + GQSFM +QIRKM+G+ +A+VR + I + + VP AP
Sbjct: 138 PDHLTHLEMVTMVIEGQSFMYNQIRKMVGMVIAIVRGQSETFSIPNSFTLP-QMAVPRAP 196
Query: 445 EVGLYLDECIFASYNKKWKDS 465
+GL L+ F Y +K+ S
Sbjct: 197 GLGLALERVKFRDYERKFGKS 217
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 27/47 (57%)
Query: 138 PGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
P +ER+N LP IR GY RV SFNA+ C R Y Y LP FA
Sbjct: 5 PNPIERINEQLPHDIRAHGYARVAGSFNARTACTSRVYSYTLPTFAF 51
>gi|145527104|ref|XP_001449352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416940|emb|CAK81955.1| unnamed protein product [Paramecium tetraurelia]
Length = 414
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAK-TIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
K ++A AY G+ Y G+++ + TIE L +AL + RD N + R+
Sbjct: 47 KFTRVAFKLAYVGINYHGLEQQINQQNTIENHLFKALQRVRMIDNRDDCN-----YTRAG 101
Query: 117 RTDKGVSAVGQVVS---GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQR 173
RTDKGVSA+G VV+ + + LN LP I+I V FNA+ C +R
Sbjct: 102 RTDKGVSAIGNVVALNVRKIGKSDKLYAQILNRVLPEDIQILDECIVDEKFNARYDCIKR 161
Query: 174 RYVYLLPVFALDSSSHRDRESVMASLG 200
Y Y + +D + E+++ +G
Sbjct: 162 VYKYYF--YKMDYNIELMTEAMLLFIG 186
>gi|401828224|ref|XP_003888404.1| tRNA pseudouridine synthase domain-containing protein
[Encephalitozoon hellem ATCC 50504]
gi|392999676|gb|AFM99423.1| tRNA pseudouridine synthase domain-containing protein
[Encephalitozoon hellem ATCC 50504]
Length = 314
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 32/140 (22%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+R +A+ +Y G GY G+ G +TI G+LE AL +G + E+ + RT
Sbjct: 35 QRTVALKISYDGQGYSGLSPQNGKETIGGNLEYALKATG-LGEK---------LVYAGRT 84
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVE-------------------RLNSNLPTQIRIFGYKR 159
D GVSA+ + S C+ ++E LN++LP+ IR+ G+
Sbjct: 85 DAGVSAINMIAS---CVVISRVLEPNRSYSITEDDYREYKYDIMLNNHLPSDIRVIGWAP 141
Query: 160 VTASFNAKKFCDQRRYVYLL 179
V +FNA+ C QR+Y Y
Sbjct: 142 VPDTFNARFTCVQRQYRYYF 161
>gi|320107224|ref|YP_004182814.1| pseudouridine synthase I TruA [Terriglobus saanensis SP1PR4]
gi|319925745|gb|ADV82820.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Terriglobus saanensis SP1PR4]
Length = 287
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 48 ADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNP 107
+D++T Q + + AY G + G Q PG TI+G L A+ + +G
Sbjct: 8 SDASTSLQAWRLK-----LAYDGTDFAGWQVQPGLPTIQGSLASAIRSVTSEEVLPQG-- 60
Query: 108 RRYDWARSARTDKGVSAVGQVVSGRFCID-PPGLVER-LNSNLPTQIRIFGYKRVTASFN 165
S RTD GV A+GQVVS + + PP ++R LN LPT IR+ V F+
Sbjct: 61 -------SGRTDAGVHALGQVVSLKLAVPIPPDNLKRALNRILPTSIRVLEAGIVAPEFH 113
Query: 166 AKKFCDQRRYVYLL 179
A++ + Y Y L
Sbjct: 114 ARRGVLSKTYRYTL 127
>gi|71663014|ref|XP_818505.1| pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70883761|gb|EAN96654.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi]
Length = 409
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 60 RKIAIFFAYCGVGYQGMQKNP-GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
RK+AI AY G Y G+ K + T+E + AL H + + P D AR RT
Sbjct: 20 RKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQ---DGP--IDLARCGRT 74
Query: 119 DKGVSAVGQVVS-----GRFCIDPP-----GLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
DKGVSA+G V S + D P LNS LP IRI G+ V +F+A+
Sbjct: 75 DKGVSALGNVFSLTVRASSWPTDSPQKPPLDYCAMLNSALPVTIRIVGWAYVDDTFDARF 134
Query: 169 FCDQRRYVYLL 179
C R Y Y
Sbjct: 135 SCVGRTYRYYF 145
>gi|407416983|gb|EKF37879.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi
marinkellei]
Length = 459
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 60 RKIAIFFAYCGVGYQGMQKNP-GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
RK+AI AY G Y G+ K + T+E + AL H + + P D AR RT
Sbjct: 70 RKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQ---DGPS--DLARCGRT 124
Query: 119 DKGVSAVGQVVS-----GRFCIDPP-----GLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
DKGVSA+G S + D P LNS LP IRI G+ V SF+A+
Sbjct: 125 DKGVSALGNAFSLTVRASSWPTDSPQKPPLDYCAMLNSALPVTIRIVGWAYVDDSFDARF 184
Query: 169 FCDQRRYVYLL 179
C R Y Y
Sbjct: 185 SCVGRTYRYYF 195
>gi|288932131|ref|YP_003436191.1| tRNA pseudouridine synthase A [Ferroglobus placidus DSM 10642]
gi|288894379|gb|ADC65916.1| tRNA pseudouridine synthase A [Ferroglobus placidus DSM 10642]
Length = 256
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G + G Q P +T+EG++ +A +G + G + RTD GV A+G
Sbjct: 6 AYIGTNFHGSQYQPELRTVEGEIRKAFEKAGI----EYGKI-----MFAGRTDAGVHAIG 56
Query: 127 QVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
V + +V++LNSNLP + ++GYK V +F +K R+Y Y++
Sbjct: 57 NVFATDLEEFSKKVVKKLNSNLPEDVSVWGYKVVDENFKPRK-AKWRKYCYVI 108
>gi|358338575|dbj|GAA57020.1| tRNA pseudouridine synthase 3, partial [Clonorchis sinensis]
Length = 368
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 68/163 (41%), Gaps = 40/163 (24%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
K+R++A FAY G Y G+ T+ L +A + + +R D+ R
Sbjct: 2 KKRRVAFQFAYLGWNYSGLAIQNFGVTVMQKLMDAFEKARLIEDRISC-----DFTVCGR 56
Query: 118 TDKGVSAVGQV---------VSGRFCIDPPG---------------LVERLNSNLPTQIR 153
TDKGVSA+GQV VSG +D G V LN LP IR
Sbjct: 57 TDKGVSALGQVVSLVVRSALVSGLGIVDDSGTAINERPSIPDVELDYVFLLNKLLPPDIR 116
Query: 154 IFGYKRVTASFNAK----------KF-CDQRRYVYLLPVFALD 185
I + V A F+A+ +F C QR Y Y +P LD
Sbjct: 117 ILAWSPVGADFSARYSVFFFYNCLRFTCCQRSYTYFIPCSGLD 159
>gi|296394888|ref|YP_003659772.1| tRNA pseudouridine synthase A [Segniliparus rotundus DSM 44985]
gi|296182035|gb|ADG98941.1| tRNA pseudouridine synthase A [Segniliparus rotundus DSM 44985]
Length = 278
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 64/141 (45%), Gaps = 26/141 (18%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEAL---FHSGAVSERDRGNPRRYDWARSARTDKGVS 123
AY G + G + PG +T+ G +EEAL S A + RTD GV
Sbjct: 16 AYDGTEFSGWARQPGRRTVAGVIEEALSTLLQSSA------------QLTVAGRTDAGVH 63
Query: 124 AVGQV---------VSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
A GQV VSGR + P LV +L LPT +R+ ++V+A F+A+ +R
Sbjct: 64 ATGQVAHVDVRADLVSGR--LPPEKLVRKLARMLPTDVRVLSAQKVSAQFDARFSALRRH 121
Query: 175 YVYLLPVFALDSSSHRDRESV 195
Y Y + + R RE V
Sbjct: 122 YRYHITRSVYGADPLRAREVV 142
>gi|395772103|ref|ZP_10452618.1| tRNA pseudouridine synthase A [Streptomyces acidiscabies 84-104]
Length = 288
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 26/130 (20%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAK-TIEGDLEEAL---FHSGAVSERDRGNPRRYDWARSA 116
++ + +Y G G+ G K G K T++G++E+AL SG V YD +
Sbjct: 11 RVRLDLSYDGTGFHGWAKQAGGKRTVQGEVEDALRTVTRSGEVG---------YDLTVAG 61
Query: 117 RTDKGVSAVGQVVSGRFCIDPP---------GLVERLNSNLPTQIRIFGYKRVTASFNAK 167
RTD GV A GQV +D P L++RL L +R++G A FNA+
Sbjct: 62 RTDAGVHARGQVAH----VDLPEAVWGEHREKLLKRLAGRLSKDVRVWGVAEAPAGFNAR 117
Query: 168 KFCDQRRYVY 177
RRYVY
Sbjct: 118 FAALWRRYVY 127
>gi|367011433|ref|XP_003680217.1| hypothetical protein TDEL_0C01170 [Torulaspora delbrueckii]
gi|359747876|emb|CCE91006.1| hypothetical protein TDEL_0C01170 [Torulaspora delbrueckii]
Length = 437
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 66/146 (45%), Gaps = 23/146 (15%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
RR IA+ FAY G Y G+ QK P T+EG + EAL V D P + ++R
Sbjct: 83 RRFIALKFAYLGWNYNGLAVQKEPTPLPTVEGVIIEALNKCKLVPSLD---PHDFRFSRC 139
Query: 116 ARTDKGVSAVGQVVSGRFC---------IDPPG------LVERLNSNLPTQIRIFGYK-R 159
RTDKGVSA+ QV+S F DP V LN LP IR+ R
Sbjct: 140 GRTDKGVSAMSQVIS-LFVRSNLSEEEQSDPKNDSKEIQYVNILNQLLPEDIRVSAVSLR 198
Query: 160 VTASFNAKKFCDQRRYVYLLPVFALD 185
F+A+ C R Y YL LD
Sbjct: 199 PPKGFDARFSCQYRHYRYLFHKDGLD 224
>gi|325287844|ref|YP_004263634.1| tRNA pseudouridine synthase A [Cellulophaga lytica DSM 7489]
gi|324323298|gb|ADY30763.1| tRNA pseudouridine synthase A [Cellulophaga lytica DSM 7489]
Length = 270
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 15/146 (10%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
K++ I + G + G QK PG KTIEG L + L + ER +Y + R
Sbjct: 10 KKQYYLIRLQFLGYRFSGWQKQPGYKTIEGMLAKTL--KFILPER------QYKILGAGR 61
Query: 118 TDKGVSAVGQ----VVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQR 173
TD VSA+ + G D ++ N NLP+ IRI K V FN + ++
Sbjct: 62 TDAKVSALDAAFELFLDGEPLQDLDFFLKDFNKNLPSDIRIVSVKHVKEKFNIIQHSKEK 121
Query: 174 RYVYLLPVFALDSSSHRDRESVMASL 199
YVYL F+ +H MA++
Sbjct: 122 EYVYL---FSFGEKNHPYTAPFMANI 144
>gi|326429850|gb|EGD75420.1| hypothetical protein PTSG_06496 [Salpingoeca sp. ATCC 50818]
Length = 460
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 31/156 (19%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+RKIA+ AY G Y G+ A TIE L EAL S V + + D++R R
Sbjct: 60 KRKIALKVAYLGEKYHGLAIQISAPDTIEAHLFEALEKSKLVE-----DIKTADYSRCGR 114
Query: 118 TDKGVSAVGQVVS-------------------------GRFCIDPPGLVERLNSNLPTQI 152
TDKGVSA QVVS + +D + LN LP +I
Sbjct: 115 TDKGVSAYCQVVSLVVRSNLNECRGFISKPSVEPAKKKAKATVDELDYTKILNGLLPPEI 174
Query: 153 RIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSS 188
R+ + V F+A+ C+ R Y Y +D+++
Sbjct: 175 RVVDWGAVDTDFSARFSCNARHYKYFFHRANMDTAA 210
Score = 41.6 bits (96), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 352 HYVGSHNFHNFT-----------TRTKAEDPSARRYIISFGADSVVNVEG-IDFLKCEVV 399
H VG H+F NF RT E AR G SV + +G D + ++
Sbjct: 217 HLVGEHDFRNFCKADVAGGVTNFVRTIKE---ARVCPAEIGDASVHSSDGDFDLWEFNII 273
Query: 400 GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIF 455
G +F+ HQ+R M+ + V R ++ L D + P A E+ L L +C F
Sbjct: 274 GHAFLWHQVRCMMAVLFMVGRGDEQPGMVRHLLNIDECTHKPQYVMASELPLVLYDCKF 332
>gi|262039471|ref|ZP_06012775.1| tRNA pseudouridine synthase A [Leptotrichia goodfellowii F0264]
gi|261746538|gb|EEY34073.1| tRNA pseudouridine synthase A [Leptotrichia goodfellowii F0264]
Length = 249
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 56 LCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+ K + I + + Y G + G Q+ KT++G++E+ + + + ++ + S
Sbjct: 1 MTKEKNIKMVYQYDGSKFYGFQRQKNKKTVQGEIEKVILKNFS---------QKINMISS 51
Query: 116 ARTDKGVSAVGQVVSGRFCID---PPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCD 171
RTDKGV A+GQV F ID P ++R +N NL +I+I + + FN++
Sbjct: 52 GRTDKGVHALGQV--SNFFIDEKIPLEAIKRQINKNLYGEIKILSVEEIKREFNSRFDAK 109
Query: 172 QRRYVYLL 179
R Y+Y++
Sbjct: 110 SRTYLYIM 117
>gi|116754296|ref|YP_843414.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT]
gi|121692939|sp|A0B7V0.1|TRUA_METTP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|116665747|gb|ABK14774.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT]
Length = 267
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 15/135 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
KIA+ AY G Y G Q+ PG +T+E + +AL G + D+ + RTD+
Sbjct: 2 KIALKIAYLGDRYYGFQRQPGLRTVESVMRDALLRIGVANG---------DFCYAGRTDR 52
Query: 121 GVSAVGQVVSGRFCIDPP----GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
GVSA+GQV+ F I+ +NS LP+ + + F+A+ R Y
Sbjct: 53 GVSALGQVID--FWIEEDRAYLAFPRVINSLLPSDVWAWARAVAPVGFSARWSALWREYR 110
Query: 177 YLLPVFALDSSSHRD 191
Y L +D S+ R+
Sbjct: 111 YFLFSPDIDLSAVRE 125
>gi|410671117|ref|YP_006923488.1| tRNA pseudouridine synthase A [Methanolobus psychrophilus R15]
gi|409170245|gb|AFV24120.1| tRNA pseudouridine synthase A [Methanolobus psychrophilus R15]
Length = 273
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++A+ AY G G+ G Q P TIEG++ AL + +PR ++ + RTD
Sbjct: 2 RVALKIAYVGTGFHGSQIQPNVATIEGEIFRALTELEIIQ-----DPRSANFTSAGRTDA 56
Query: 121 GVSAVGQVVSGRFCIDPPGL-VER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A V++ F D L + R +NS LPT I + + + F+ ++ R+Y Y+
Sbjct: 57 GVHARELVIA--FDTDKIHLAIPRVINSKLPTAIWAWAHAEIPEDFDPRRAAIARKYRYI 114
Query: 179 LPVFALDSSSHRDRESVMA 197
+ D S R ++A
Sbjct: 115 MSGEQYDISRIRSASRILA 133
>gi|333986897|ref|YP_004519504.1| tRNA pseudouridine synthase A [Methanobacterium sp. SWAN-1]
gi|333825041|gb|AEG17703.1| tRNA pseudouridine synthase A [Methanobacterium sp. SWAN-1]
Length = 271
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 8/118 (6%)
Query: 62 IAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKG 121
+A AY G + G Q+ P +T+E +L A + + + P+ ++ + RTD+G
Sbjct: 4 VAFKVAYIGTDFYGFQRQPNRRTVEEELLNAFKKANLMDD-----PKSSRYSIAGRTDRG 58
Query: 122 VSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
V A+G VVS F D ++ ++N L +I+I G V +F +F + R Y Y+L
Sbjct: 59 VHAMGNVVS--FVTDSKVIINQINDYLVDEIQIIGKAEVPYNFKP-RFAESRYYRYVL 113
>gi|156537085|ref|XP_001602396.1| PREDICTED: tRNA pseudouridine synthase 3-like [Nasonia vitripennis]
Length = 421
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 58/136 (42%), Gaps = 17/136 (12%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
C +R I + F Y G YQG + TIE L AL S + R+ N + R
Sbjct: 68 CHKRHIFLKFYYLGWDYQGFAAQEDTTSTIEYYLFAALTKSCLIESRETSN-----YHRC 122
Query: 116 ARTDKGVSAVGQVVSG--RFCIDPPG---------LVERLNSNLPTQIRIFGYKRVTASF 164
RTDKGVSA QV+S R ++P + LN LP IR F +
Sbjct: 123 GRTDKGVSAFSQVISLDIRSRLEPEKQDNLSDELHYCKMLNRLLPKNIRCFSWSPAHPEM 182
Query: 165 NAKKFCDQRRYVYLLP 180
+A+ C R Y Y P
Sbjct: 183 SARFDCKFRSYKYFFP 198
>gi|383790297|ref|YP_005474871.1| pseudouridylate synthase I [Spirochaeta africana DSM 8902]
gi|383106831|gb|AFG37164.1| pseudouridylate synthase I [Spirochaeta africana DSM 8902]
Length = 261
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 73/160 (45%), Gaps = 23/160 (14%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R I + Y G + G Q G +T++G+LE+AL ER +P + RTD
Sbjct: 2 RNILLDIQYDGTDFCGWQIQVGQRTVQGELEKAL-------ERLHRHP--VSLLTAGRTD 52
Query: 120 KGVSAVGQVVSGRF-----CIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
GV A GQ +G F I P LNS LP +RI G + V A F+A +RR
Sbjct: 53 SGVHAAGQ--AGNFRSDMDSIPPQKFASALNSMLPRDVRIRGSREVHADFHATHSALERR 110
Query: 175 YVYLL--PVFA---LDSSSHRDRESVMASLGSGNELVKCL 209
Y Y + FA LD +R R M SL N++ L
Sbjct: 111 YRYAMYCARFADPLLD--RYRLRLPGMPSLSRLNQMASLL 148
>gi|335040764|ref|ZP_08533886.1| tRNA pseudouridine synthase A [Caldalkalibacillus thermarum TA2.A1]
gi|334179339|gb|EGL81982.1| tRNA pseudouridine synthase A [Caldalkalibacillus thermarum TA2.A1]
Length = 287
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G Y G Q+ P A TI+G+LE AV +R +P + S RTD GV A G
Sbjct: 16 AYDGTAYAGFQRQPNAVTIQGELE-------AVLKRMHRHPVQV--VGSGRTDAGVHARG 66
Query: 127 QVVS--GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
QV+ ++ + LN+ LP IRI ++V ASF+A+ + Y Y +
Sbjct: 67 QVIHFESSLALEENEWTKALNAQLPGDIRILRTEKVPASFHARYDVRGKEYRYFI 121
>gi|448725638|ref|ZP_21708085.1| tRNA pseudouridine synthase A [Halococcus morrhuae DSM 1307]
gi|445797862|gb|EMA48300.1| tRNA pseudouridine synthase A [Halococcus morrhuae DSM 1307]
Length = 266
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G + G Q+ P T+EG L +AL G + +R P Y A + RTD+GV
Sbjct: 3 AFRLAYDGRPFYGFQRQPTVPTVEGTLFDALRELGVLDPDER-KPSGY--AAAGRTDRGV 59
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPV 181
SAV Q + P L R LN LP IR + + T SF+A R Y Y L
Sbjct: 60 SAVAQTIG---LAAPEWLTPRALNGVLPGSIRAWAHAD-TGSFHATHDAVAREYTYQLHA 115
Query: 182 FALDSSSHR 190
A D R
Sbjct: 116 PAADDERAR 124
>gi|303275814|ref|XP_003057201.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461553|gb|EEH58846.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 281
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 70/160 (43%), Gaps = 33/160 (20%)
Query: 60 RKIAIFFAYCGVGYQGM--QKNPGAK----TIEGDLEEALFHSGAVSERDRGNPRRYDWA 113
R IA+ AY G Y G Q N A+ TIEG L AL + ++ D D+
Sbjct: 16 RHIALHVAYAGWDYHGFASQGNDAAEARSPTIEGALFAALKRTRLIA--DDATWTDVDYT 73
Query: 114 RSARTDKGVSAVGQVVSGRFC--------------------IDPPGLVERLNSNLPTQIR 153
R RTD GVSA+GQ+VS R +D P + LN LP IR
Sbjct: 74 RCGRTDAGVSAMGQLVSLRARSRGTRYTPPSPPPPAKDADELDYPSI---LNRALPDDIR 130
Query: 154 IFGYKRVTASFNAKKFCDQRRYVYLLPVF--ALDSSSHRD 191
+ G+ V +F+A+ C+ R Y Y + LD RD
Sbjct: 131 VTGWCYVDEAFSARFDCEWRHYKYFFTLHDGGLDLEKMRD 170
>gi|327401434|ref|YP_004342273.1| tRNA pseudouridine synthase A [Archaeoglobus veneficus SNP6]
gi|327316942|gb|AEA47558.1| tRNA pseudouridine synthase A [Archaeoglobus veneficus SNP6]
Length = 290
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++A+ AY G + G Q P +T+EG+L +A F S + N + ++ + RTD
Sbjct: 26 RVALKLAYIGTDFAGFQYQPDERTVEGELFKA-FESLGI------NVKASNYKCAGRTDA 78
Query: 121 GVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
GV A QVV+ L +N+NLP I ++ + +V FN ++ R Y+Y+L
Sbjct: 79 GVHAFSQVVALDVSDAKKVLPRVINANLPDDIVVWAWAKVPDDFN-PRYATSRTYIYVLY 137
Query: 181 VFALDSSSHR 190
D S+ R
Sbjct: 138 SREYDISAMR 147
>gi|205372037|ref|ZP_03224854.1| tRNA pseudouridine synthase A [Bacillus coahuilensis m4-4]
Length = 251
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 56 LCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+ R+I Y G Y G Q P +KTI+G++E+ L E+ G P R + S
Sbjct: 1 MIDMRRIKCTVQYDGTWYAGYQVQPNSKTIQGEIEKVL-------EKIHGKPIRI--SAS 51
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVER----LNSNLPTQIRIFGYKRVTASFNAKKFCD 171
RTD GV A+GQV F D VE+ NS LP I + + V SF+++
Sbjct: 52 GRTDAGVHAIGQVF--HFDTDTKFPVEKWLPIFNSQLPNDIVVIHVEEVAGSFHSRFGSI 109
Query: 172 QRRYVY 177
++ Y Y
Sbjct: 110 EKEYRY 115
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 351 KHYVGSHNFHNF-TTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIR 409
++ +G+H+F +F + +T+ ED + IS + + L +VG F+ + +R
Sbjct: 148 RYLLGTHDFTSFCSAKTEVEDKVRTIFTISIEEEE-------NMLTFSLVGNGFLYNMVR 200
Query: 410 KMIGLAVAVVRNC-APQSLIETALQKDVNINVPTAPEVGLYL 450
+IG+ + V + AP + E KD TAP GLYL
Sbjct: 201 IIIGVLIEVGQGKRAPIEVKEILEAKDRRAGGKTAPAQGLYL 242
>gi|157106978|ref|XP_001649570.1| pseudouridylate synthase [Aedes aegypti]
gi|108879706|gb|EAT43931.1| AAEL004663-PA [Aedes aegypti]
Length = 467
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 63/140 (45%), Gaps = 21/140 (15%)
Query: 57 CKRRKIAIFFAYCGVGYQGM-QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
C +R I + F Y G YQG + A+TIE L AL + R+ N + R
Sbjct: 71 CHKRHILLRFYYLGWDYQGYASQEDSARTIEHLLFNALTRVCLIENRETSN-----YHRC 125
Query: 116 ARTDKGVSAVGQVVS----GRFC----IDPPGLV------ERLNSNLPTQIRIFGY-KRV 160
RTDKGVSA QVVS +F ++P + + LN LP IR + V
Sbjct: 126 GRTDKGVSAFHQVVSLDVRSKFAPENQLEPESIANEINYCQLLNRVLPQDIRCVAWMPMV 185
Query: 161 TASFNAKKFCDQRRYVYLLP 180
+++A+ C R Y Y P
Sbjct: 186 NPNYSARFDCRSRTYRYFFP 205
>gi|190346281|gb|EDK38328.2| hypothetical protein PGUG_02426 [Meyerozyma guilliermondii ATCC
6260]
Length = 431
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 69/148 (46%), Gaps = 27/148 (18%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+R IA+ FAY G Y G+ Q P T+E ++ EAL + ++E D P +++R
Sbjct: 69 KRFIALRFAYAGWNYNGLAFQNEPTPLPTVEQEILEALTKARLITEPD---PLVCNFSRC 125
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVER-----------------LNSNLPTQIRIFGY- 157
RTDKGVSA+ QV+S GL E LNS LP IRI G
Sbjct: 126 GRTDKGVSAMNQVISLEV---RSGLTEEQRSQPGADQKEIPYITILNSLLPPSIRITGIC 182
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFALD 185
F+A+ C R Y Y+ + LD
Sbjct: 183 LNPPPGFDARFSCSYRHYRYIFRRYDLD 210
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGI--DFLKCEVVGQSFMLHQ 407
K Y G H+F NF + I ++G + N+ + D+ ++ G +F+ HQ
Sbjct: 219 KKYEGEHDFRNFCKI------DGSKQITNYGRTILSANIMPLKDDYYVFDLKGTAFLWHQ 272
Query: 408 IRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIF 455
+R M+G+ V R SL++ L DVN N P A +V L L +C+F
Sbjct: 273 VRCMMGILFLVGRKLEKPSLVDELLNVDVNPNKPNYDMANDVPLVLYDCVF 323
>gi|146417456|ref|XP_001484697.1| hypothetical protein PGUG_02426 [Meyerozyma guilliermondii ATCC
6260]
Length = 431
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 69/148 (46%), Gaps = 27/148 (18%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+R IA+ FAY G Y G+ Q P T+E ++ EAL + ++E D P +++R
Sbjct: 69 KRFIALRFAYAGWNYNGLAFQNEPTPLPTVEQEILEALTKARLITEPD---PLVCNFSRC 125
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVER-----------------LNSNLPTQIRIFGY- 157
RTDKGVSA+ QV+S GL E LNS LP IRI G
Sbjct: 126 GRTDKGVSAMNQVISLEV---RSGLTEEQRSQPGADQKEIPYITILNSLLPPSIRITGIC 182
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFALD 185
F+A+ C R Y Y+ + LD
Sbjct: 183 LNPPPGFDARFSCSYRHYRYIFRRYDLD 210
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGI--DFLKCEVVGQSFMLHQ 407
K Y G H+F NF + I ++G + N+ + D+ ++ G +F+ HQ
Sbjct: 219 KKYEGEHDFRNFCKI------DGSKQITNYGRTILSANIMPLKDDYYVFDLKGTAFLWHQ 272
Query: 408 IRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIF 455
+R M+G+ V R SL++ L DVN N P A +V L L +C+F
Sbjct: 273 VRCMMGILFLVGRKLEKPSLVDELLNVDVNPNKPNYDMANDVPLVLYDCVF 323
>gi|357119728|ref|XP_003561586.1| PREDICTED: tRNA pseudouridine synthase 3-like [Brachypodium
distachyon]
Length = 450
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 67/146 (45%), Gaps = 24/146 (16%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAK-TIEGDLEEALFHSGAVSERDR---GNPRRYDW 112
C++R +A+ Y G + G + T+E ++ + L ER R G+ + +
Sbjct: 111 CQKRLVALKIMYFGQRFYGFASEAHTEPTVESEIFKVL-------ERARLLVGSRKESCY 163
Query: 113 ARSARTDKGVSAVGQVVSGRF---CIDPPG----------LVERLNSNLPTQIRIFGYKR 159
+R RTDKGVSA GQV+S DP G V+ LN LP IR+ G+
Sbjct: 164 SRCGRTDKGVSATGQVISLYLRSNLKDPGGNVLDERSEIDYVKVLNRMLPRDIRVIGWCP 223
Query: 160 VTASFNAKKFCDQRRYVYLLPVFALD 185
V A F A+ C R Y YL LD
Sbjct: 224 VAADFLARFSCLGREYKYLFWKGGLD 249
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFL- 394
F G + + + ++G H+F NF A + RR+I F + D L
Sbjct: 243 FWKGGLDVPKMQKAASKFIGEHDFRNFCKMDAANVSNYRRHITDFDISAYDERSNNDELW 302
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLD 451
+ G +F+ HQ+R M+ + + + ++++ L P APE+ L L
Sbjct: 303 AMNIKGSAFLWHQVRCMVAVLFLIGQGLESPCVVDSLLDITRTPRKPQYTMAPELPLILR 362
Query: 452 ECIF 455
C F
Sbjct: 363 SCKF 366
>gi|390564551|ref|ZP_10245346.1| Pseudouridylate synthase [Nitrolancetus hollandicus Lb]
gi|390172201|emb|CCF84669.1| Pseudouridylate synthase [Nitrolancetus hollandicus Lb]
Length = 289
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R I Y G + G Q+ PG +T++ +E+AL E+ G P R A + RTD
Sbjct: 4 RPFRIDLGYDGTDFAGSQRQPGQRTVQAVVEQAL-------EQLSGQPIRI--ALAGRTD 54
Query: 120 KGVSAVGQVVSGRFCIDPPG--LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
+GV AVGQV SG + L L + P + I+G + V A+F+A+ R Y Y
Sbjct: 55 RGVHAVGQVASGWINWERSADDLARALQAVTPEDVAIYGARAVDAAFHARFSACYREYRY 114
>gi|384438771|ref|YP_005653495.1| tRNA pseudouridine synthase A [Thermus sp. CCB_US3_UF1]
gi|359289904|gb|AEV15421.1| tRNA pseudouridine synthase A [Thermus sp. CCB_US3_UF1]
Length = 253
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 21/125 (16%)
Query: 60 RKIAIFFAYCGVGYQGMQKN-PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
R+I I Y G G+ G+Q+ PG +T++G+LE AL GA+ + + RT
Sbjct: 2 RRILILAEYDGTGFAGLQRQRPGLRTVQGELEGALARIGAIPKA----------VAAGRT 51
Query: 119 DKGVSAVGQVVSGRFCIDPPGLV------ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
D GV A+ F +D PG + E LN LP +++ + V F+A+K
Sbjct: 52 DAGVHALAMP----FHVDLPGRIPTERIPEALNRLLPEDLKVLRAQEVAQDFHARKDALW 107
Query: 173 RRYVY 177
R Y Y
Sbjct: 108 RAYRY 112
>gi|258540648|ref|YP_003175147.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus Lc 705]
gi|385836286|ref|YP_005874061.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus ATCC 8530]
gi|257152324|emb|CAR91296.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus Lc 705]
gi|355395778|gb|AER65208.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus ATCC 8530]
Length = 247
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 18/118 (15%)
Query: 66 FAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
AY G + G Q P +T++G L++AL ++ +G P D S RTD GV A+
Sbjct: 8 LAYDGTNFAGYQVQPKQRTVQGVLQKAL------TKMAKGQPVHVDG--SGRTDSGVHAL 59
Query: 126 GQVVSGRFCIDPPG------LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GQV+S D PG ++ +NS +P I I + V A F+A+ +RY Y
Sbjct: 60 GQVIS----FDYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKRYRY 113
>gi|258509450|ref|YP_003172201.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus GG]
gi|385829084|ref|YP_005866856.1| tRNA pseudouridine synthase [Lactobacillus rhamnosus GG]
gi|257149377|emb|CAR88350.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus GG]
gi|259650729|dbj|BAI42891.1| tRNA pseudouridine synthase [Lactobacillus rhamnosus GG]
Length = 247
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 18/118 (15%)
Query: 66 FAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
AY G + G Q P +T++G L++AL ++ +G P D S RTD GV A+
Sbjct: 8 LAYDGTNFAGYQVQPKQRTVQGVLQKAL------TKMAKGQPVHVDG--SGRTDSGVHAL 59
Query: 126 GQVVSGRFCIDPPG------LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GQV+S D PG ++ +NS +P I I + V A F+A+ +RY Y
Sbjct: 60 GQVIS----FDYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKRYRY 113
>gi|76803149|ref|YP_331244.1| tRNA pseudouridine synthase A [Natronomonas pharaonis DSM 2160]
gi|121697999|sp|Q3IMP6.1|TRUA_NATPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|76559014|emb|CAI50612.1| tRNA pseudouridine synthase TruA [Natronomonas pharaonis DSM 2160]
Length = 267
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 69/154 (44%), Gaps = 10/154 (6%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G G++G Q+ P +T+E L EAL G E G P Y A + RTD GV
Sbjct: 3 AFRIAYDGTGFRGFQRQPHGETVENALFEALSSLGVAFE--DGRPPGY--AAAGRTDAGV 58
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPV 181
SA Q V+ P L+ R LN LP +R + V +F+A R Y Y L
Sbjct: 59 SARAQTVA---FEAPAWLLPRALNGELPASVRAWAAADVGDAFHATHDATARAYRYFL-- 113
Query: 182 FALDSSSHRDRESVMASLGSGNELVKCLECSERG 215
+A + S+ R + SG+ +RG
Sbjct: 114 YAPEPSADTTRARAACARLSGSHDFHNFTPDDRG 147
>gi|298530329|ref|ZP_07017731.1| tRNA pseudouridine synthase A [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509703|gb|EFI33607.1| tRNA pseudouridine synthase A [Desulfonatronospira thiodismutans
ASO3-1]
Length = 247
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 57/125 (45%), Gaps = 19/125 (15%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ + AY G GY G Q TI+G+LE+AL + S R G S RTD
Sbjct: 4 RVRLTLAYDGTGYNGWQIQKDGLTIQGELEKALSRICSASIRVHG---------SGRTDA 54
Query: 121 GVSAVGQVVSGRFCIDPPGLV------ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
GV A+GQV DPP LN+ LP IR+ + R F+A+ ++
Sbjct: 55 GVHALGQVAH----FDPPPKFLNVPWNRALNAVLPPGIRVLDFARTDRKFHARFSARAKQ 110
Query: 175 YVYLL 179
Y Y L
Sbjct: 111 YSYTL 115
>gi|423078512|ref|ZP_17067192.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus ATCC 21052]
gi|357550543|gb|EHJ32356.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus ATCC 21052]
Length = 242
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 18/118 (15%)
Query: 66 FAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
AY G + G Q P +T++G L++AL ++ +G P D S RTD GV A+
Sbjct: 3 LAYDGTNFAGYQVQPKQRTVQGVLQKAL------TKMAKGQPVHVDG--SGRTDSGVHAL 54
Query: 126 GQVVSGRFCIDPPG------LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GQV+S D PG ++ +NS +P I I + V A F+A+ +RY Y
Sbjct: 55 GQVIS----FDYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKRYRY 108
>gi|260893342|ref|YP_003239439.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4]
gi|260865483|gb|ACX52589.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4]
Length = 259
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R +A+ AY G + G Q+ PG +T++G LEEAL + + +G + RTD
Sbjct: 4 RHVALKVAYDGTAFSGFQRQPGLRTVQGVLEEALARLTKETCQVKG---------AGRTD 54
Query: 120 KGVSAVGQVVSGRFC--IDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A GQVVS R I P LV LN LP + + V F+ + + Y Y
Sbjct: 55 AGVHAEGQVVSFRTASSIPTPRLVPALNGLLPPDVAVLAAAEVPEQFHPRYDAVSKVYRY 114
>gi|303288467|ref|XP_003063522.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455354|gb|EEH52658.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 419
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%)
Query: 390 GIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLY 449
G F++ V G SF+L+QIRKMI AV V P+ I L + P AP LY
Sbjct: 215 GEPFVRVVVAGDSFVLYQIRKMIATAVGVALGWIPREFIPVTLARPARAATPIAPASTLY 274
Query: 450 LDECIFASYNK 460
L E F+ + K
Sbjct: 275 LREAEFSEFRK 285
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 136 DPPGLVERLNSNLP--TQIRIFGYKRVTASFNAKKFCDQRRYVYLLP--VFALDSSSHRD 191
+P G+VER+N+ LP + +R+F SF A++ C +R Y YLLP V L S R+
Sbjct: 16 EPGGVVERINAKLPATSGVRVFAAYSAPKSFQARRACARRTYHYLLPARVLGLGVSGERE 75
>gi|119718091|ref|YP_925056.1| tRNA pseudouridine synthase A [Nocardioides sp. JS614]
gi|119538752|gb|ABL83369.1| tRNA pseudouridine synthase A [Nocardioides sp. JS614]
Length = 268
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+I + AY G + G PG +T++G+L +AL V E + RTD
Sbjct: 2 RIRLDLAYDGTDFHGWASQPGLRTVQGELSDALATVLRVPE--------VAVVCAGRTDA 53
Query: 121 GVSAVGQVVSGRF-CIDPP---GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
GV A GQVV ++P GLV RLN LP +R+ A F+A+ RRY
Sbjct: 54 GVHARGQVVHADLDGLEPATVEGLVRRLNGRLPADVRVRRAVEAPAGFDARFGALWRRYA 113
Query: 177 Y 177
Y
Sbjct: 114 Y 114
>gi|199598865|ref|ZP_03212276.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus HN001]
gi|418072310|ref|ZP_12709582.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus R0011]
gi|421770039|ref|ZP_16206742.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus LRHMDP2]
gi|421773294|ref|ZP_16209941.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus LRHMDP3]
gi|199590277|gb|EDY98372.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus HN001]
gi|357537561|gb|EHJ21585.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus R0011]
gi|411182200|gb|EKS49353.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus LRHMDP3]
gi|411183086|gb|EKS50227.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus LRHMDP2]
Length = 247
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 18/118 (15%)
Query: 66 FAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
AY G + G Q P +T++G L++AL ++ +G P D S RTD GV A+
Sbjct: 8 LAYDGTNFAGYQVQPKQRTVQGVLQKAL------TKMAKGQPVHVDG--SGRTDSGVHAL 59
Query: 126 GQVVSGRFCIDPPG------LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GQV+S D PG ++ +NS +P I I + V A F+A+ +RY Y
Sbjct: 60 GQVIS----FDYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKRYRY 113
>gi|390942069|ref|YP_006405830.1| pseudouridylate synthase I [Belliella baltica DSM 15883]
gi|390415497|gb|AFL83075.1| pseudouridylate synthase I [Belliella baltica DSM 15883]
Length = 258
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
+ Y G+ Y G QK PG KTI+G LE+ R ++ + RTD GVS
Sbjct: 10 FYIQYLGLRYHGWQKQPGLKTIQGKLEKVF--------RYVFGHEEFNILSAGRTDSGVS 61
Query: 124 AVGQVVSGRFC------IDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
G F ID P ++++N NLP IR+ KRV+ FN + + Y Y
Sbjct: 62 CH----RGAFELFNIAEIDLPSFIDQVNENLPDDIRLLEGKRVSLDFNIIQDVTAKEYRY 117
>gi|335356520|ref|ZP_08548390.1| tRNA pseudouridine synthase A [Lactobacillus animalis KCTC 3501]
Length = 250
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 17/127 (13%)
Query: 56 LCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR- 114
+ KR I + AY G + G Q P +T++ LE+AL +S+ D D+
Sbjct: 1 MTKRYMITL--AYDGTNFAGFQAQPKQRTVQSVLEKAL---NKMSKFD-------DYITI 48
Query: 115 --SARTDKGVSAVGQVVSGRFC--IDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFC 170
S RTD GV A+GQV+ F I P G+++ LNS LP + K V+ F+A+
Sbjct: 49 YGSGRTDSGVHALGQVIHFDFPHDISPEGMLKGLNSMLPLDCEVIDCKIVSDDFHARFTT 108
Query: 171 DQRRYVY 177
+RY+Y
Sbjct: 109 HGKRYMY 115
>gi|145350766|ref|XP_001419769.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580001|gb|ABO98062.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 257
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 60 RKIAIFFAYCGVGY-----QGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
RKIA+ Y G Y QG +T+E L +AL + V E R + D+AR
Sbjct: 11 RKIALHVCYLGWDYHGFASQGAANAAAPRTVEQALFDALAKTKLV-ESARDVFKVADYAR 69
Query: 115 SARTDKGVSAVGQVVS------GRFCIDPP-GLVERLNSNLPTQIRIFGYKRVTASFNAK 167
RTD+GVS +GQ+V+ G +D V LN LP +R G+ V NA+
Sbjct: 70 CGRTDRGVSGLGQIVTLRARSNGAEGVDEELDYVALLNRALPNDVRALGWAPVDDELNAR 129
Query: 168 KFCDQRRYVYLL 179
C+ R+Y Y
Sbjct: 130 FDCEWRQYKYFF 141
>gi|229552739|ref|ZP_04441464.1| tRNA-pseudouridine synthase I [Lactobacillus rhamnosus LMS2-1]
gi|229313945|gb|EEN79918.1| tRNA-pseudouridine synthase I [Lactobacillus rhamnosus LMS2-1]
Length = 242
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 18/118 (15%)
Query: 66 FAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
AY G + G Q P +T++G L++AL ++ +G P D S RTD GV A+
Sbjct: 3 LAYDGTNFAGYQVQPKQRTVQGVLQKAL------TKMAKGQPVHVDG--SGRTDSGVHAL 54
Query: 126 GQVVSGRFCIDPPG------LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GQV+S D PG ++ +NS +P I I + V A F+A+ +RY Y
Sbjct: 55 GQVIS----FDYPGNIPAESMLRAMNSLMPLDIEILKAEIVAADFHARYSAKGKRYRY 108
>gi|357419520|ref|YP_004932512.1| tRNA pseudouridine synthase A [Thermovirga lienii DSM 17291]
gi|355396986|gb|AER66415.1| tRNA pseudouridine synthase A [Thermovirga lienii DSM 17291]
Length = 250
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 15/123 (12%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+ A+ +Y G + G QK P ++T++G LE AL E G+P + RTDK
Sbjct: 3 RYAMQVSYKGKDFSGWQKQPNSRTVQGVLESAL-------ELLAGHPVTV--YGAGRTDK 53
Query: 121 GVSAVGQVVSGRFCID----PPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
GV A+GQV S F ++ P L+ +N++LP +R+ + V SF+A+ R YV
Sbjct: 54 GVHALGQVAS--FDLNRHWAPEKLLLAVNAHLPKDVRVMRMRYVDNSFHARYSALWREYV 111
Query: 177 YLL 179
Y +
Sbjct: 112 YFI 114
>gi|452852454|ref|YP_007494138.1| tRNA pseudouridine synthase A [Desulfovibrio piezophilus]
gi|451896108|emb|CCH48987.1| tRNA pseudouridine synthase A [Desulfovibrio piezophilus]
Length = 250
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+I + AY G + G Q P +T++GDLE+AL S R G S RTD
Sbjct: 3 RIRLTLAYDGTDFSGWQLQPHDRTVQGDLEKALGRILGHSPRVHG---------SGRTDS 53
Query: 121 GVSAVGQVVSGRFCID-PPGLVE-----RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
GV A+GQV D PP + LNS LPT IR+ RV F+A+ +
Sbjct: 54 GVHAMGQVCH----FDCPPERADIPWQRALNSMLPTDIRVLESARVPEMFHARYSATGKI 109
Query: 175 YVYLL 179
Y Y+L
Sbjct: 110 YEYVL 114
>gi|324501041|gb|ADY40469.1| tRNA pseudouridine synthase tag-124 [Ascaris suum]
gi|324504466|gb|ADY41930.1| tRNA pseudouridine synthase tag-124 [Ascaris suum]
Length = 388
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 30/141 (21%)
Query: 65 FFAYCGVGYQGM-QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
F Y G Y+G+ Q+ T+E +++AL + + ++ +W RS RTDKGVS
Sbjct: 1 MFLYYGWEYEGLVQQQDTVNTVEEVIKDALLRTRLIESWNKC-----EWIRSGRTDKGVS 55
Query: 124 AVGQVVS---------GRFC-----------IDPPG----LVERLNSNLPTQIRIFGYKR 159
A Q+ S G I PP ++ LN LP IR+ +
Sbjct: 56 AFRQIASLIVRSSDPEGEHVFWPENADPHSRITPPHSELMYLKMLNGVLPKNIRVLAWAP 115
Query: 160 VTASFNAKKFCDQRRYVYLLP 180
V FNA+ C +R Y Y P
Sbjct: 116 VALDFNARFSCTKRVYKYAFP 136
>gi|255566350|ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223536579|gb|EEF38224.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 443
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALF----HSGAVSERDRGNPRRYDWAR 114
R I +Y G + G QK PG T++G +E++L A ++ P
Sbjct: 119 RVNFKIDLSYHGGSFDGWQKQPGLNTVQGLVEKSLGKFVDEKKAQQLKEACKPLEGCAVV 178
Query: 115 SARTDKGVSAVGQVVS---GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCD 171
+ RTDKGVSA+ QV S R + P + + +NS+ P +IR+ V+ F+
Sbjct: 179 AGRTDKGVSALRQVCSFYTWRKDVRPHEIEDAINSSAPGKIRVISVSEVSRVFHPNFSAK 238
Query: 172 QRRYVYLLPV 181
RRY+Y+ P+
Sbjct: 239 WRRYLYIFPI 248
>gi|449328632|gb|AGE94909.1| tRNA pseudouridine synthase a [Encephalitozoon cuniculi]
Length = 339
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 74/167 (44%), Gaps = 30/167 (17%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+R IA+ +Y G Y G+ G +TI G LE AL S + E+ + RT
Sbjct: 58 KRTIALKISYDGRRYSGVSPQSGRETIGGYLEYAL-KSTRLGEK---------LVYAGRT 107
Query: 119 DKGVSAVGQVVSGRFC--IDPP----GLVE----------RLNSNLPTQIRIFGYKRVTA 162
D GVSA+G + SG I+ P + E LN++LP IR+ G+ V
Sbjct: 108 DAGVSAIGMIASGVLTSRIEMPNRSYAVAEDDYKEYKYDVMLNNHLPPDIRVVGWAPVPD 167
Query: 163 SFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCL 209
+F+A+ C QR+Y Y LD DR S AS G C
Sbjct: 168 TFSARFTCIQRQYRYYFHKKGLDI----DRMSKAASEIKGMSSFYCF 210
>gi|412985295|emb|CCO20320.1| predicted protein [Bathycoccus prasinos]
Length = 593
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 388 VEGID---FLKCEVVGQSFMLHQIRKMIGLAVAVVRN-----CAPQSLIETALQKDVNIN 439
+EG + F++ +V G+SFMLHQIRKMI AV V + P S I+ +L + +
Sbjct: 395 IEGFESYPFVRVKVYGESFMLHQIRKMIATAVLVALDSEETPTMPLSFIKASLCRPCRVV 454
Query: 440 VPTAPEVGLYLDECIFASYNKKWKDSHEE 468
P AP + L+L F S+ K +HEE
Sbjct: 455 TPMAPPLTLFLTGAEFMSFRKT---NHEE 480
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 8/100 (8%)
Query: 40 DLIPAAAGADSTTKRQLCKRR-KIAIFFAYCGVGYQGMQKN---PGAKTIEGDLEEALFH 95
D +P+ + TK +L +++ IA+ AY G ++G +N P T++ +E+A++
Sbjct: 73 DFMPSPTDDEDATKFELPRKKIPIALVLAYVGDTFKGNTQNVMLPRGSTVDDVIEDAIYK 132
Query: 96 SGAV---SERDRGNPRRYDWARSARTDKGVSAVGQVVSGR 132
+G + + R +G R W+RS+RTDKGVS++ VV R
Sbjct: 133 AGGILFSNYRSKG-LSRLKWSRSSRTDKGVSSLFTVVGLR 171
>gi|340378747|ref|XP_003387889.1| PREDICTED: tRNA pseudouridine synthase 3-like [Amphimedon
queenslandica]
Length = 434
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 36/201 (17%)
Query: 22 PDPKRLKMSATSTSDDERDLIPAAAGADSTTKR------QLCKRRKIAIFFAYCGVGYQG 75
P + ++ + T+ DL+ + TK+ ++ +R +A Y G Y G
Sbjct: 11 PAFNKARIMSIVTASSTEDLLGEKVEQATATKKSKIFDFKMWNKRHVAFKVLYLGWDYSG 70
Query: 76 MQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS---- 130
+ ++ +TIE L +AL + + + P + +++R RTDKGVSA GQV++
Sbjct: 71 LALQDTTTETIEAKLFDALLKTKLIED-----PSQSNYSRCGRTDKGVSAFGQVITLDVR 125
Query: 131 -----GRFCIDPPG--LVER-------------LNSNLPTQIRIFGYKRVTASFNAKKFC 170
G I P G +ER LN LP I++ + V F+A+
Sbjct: 126 TALLEGEGVIVPEGSKAIERKGDKIIELPYLNMLNRVLPKDIKLSAWAPVPPQFSARFNT 185
Query: 171 DQRRYVYLLPVFALDSSSHRD 191
R Y Y P+ ++D R+
Sbjct: 186 MHRIYKYYFPMGSMDIELMRE 206
>gi|381164284|ref|ZP_09873514.1| pseudouridylate synthase I [Saccharomonospora azurea NA-128]
gi|379256189|gb|EHY90115.1| pseudouridylate synthase I [Saccharomonospora azurea NA-128]
Length = 306
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 24/135 (17%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I AY G + G + PG +T++G LE+AL S++ G + RTD
Sbjct: 21 RLRIDLAYDGTDFSGWARQPGRRTVQGVLEDAL------SKQPPGASLAGSVVVAGRTDA 74
Query: 121 GVSAVGQVVS---GRFC---------IDPPGLVE------RLNSNLPTQIRIFGYKRVTA 162
GV A GQVV RF + P GL + RLN LP +R+ R A
Sbjct: 75 GVHAAGQVVHVDVTRFAGETHSRTTPVSPDGLPDLDRARHRLNRVLPADVRVLRVSRAPA 134
Query: 163 SFNAKKFCDQRRYVY 177
F+A+ +R Y Y
Sbjct: 135 GFDARFSAAKRHYRY 149
>gi|19074961|ref|NP_586467.1| tRNA PSEUDOURIDINE SYNTHASE A [Encephalitozoon cuniculi GB-M1]
gi|19069686|emb|CAD26071.1| tRNA PSEUDOURIDINE SYNTHASE A [Encephalitozoon cuniculi GB-M1]
Length = 339
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 74/167 (44%), Gaps = 30/167 (17%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+R IA+ +Y G Y G+ G +TI G LE AL S + E+ + RT
Sbjct: 58 KRTIALKISYDGRRYSGVSPQSGRETIGGYLEYAL-KSTRLGEK---------LVYAGRT 107
Query: 119 DKGVSAVGQVVSGRFC--IDPP----GLVE----------RLNSNLPTQIRIFGYKRVTA 162
D GVSA+G + SG I+ P + E LN++LP IR+ G+ V
Sbjct: 108 DAGVSAIGMIASGVLTSRIEMPNRSYAVAEDDYKEYKYDVMLNNHLPPDIRVVGWAPVPD 167
Query: 163 SFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCL 209
+F+A+ C QR+Y Y LD DR S AS G C
Sbjct: 168 TFSARFTCIQRQYRYYFHKKGLDI----DRMSKAASEIKGMSSFYCF 210
>gi|284166628|ref|YP_003404907.1| Pseudouridine synthase I, TruA, alpha/beta domain-containing
protein [Haloterrigena turkmenica DSM 5511]
gi|284016283|gb|ADB62234.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Haloterrigena turkmenica DSM 5511]
Length = 295
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G GY G Q+ P T+E + +AL V D P Y A + RTD GV
Sbjct: 5 AFRIAYDGTGYHGFQRQPDVPTVEDAIFDAL-RDLEVLAADADRPDGY--AAAGRTDAGV 61
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPV 181
SA+ Q V+ P L R LN LP IR + F+A ++R Y Y L
Sbjct: 62 SALAQTVA---LEAPDWLTPRALNGELPADIRAWAAADAPPEFHATHHAERREYAYHLYA 118
Query: 182 FALDSSSHRDRES 194
D S RDR +
Sbjct: 119 PPAD-SRRRDRAA 130
>gi|330507400|ref|YP_004383828.1| tRNA pseudouridine synthase A [Methanosaeta concilii GP6]
gi|328928208|gb|AEB68010.1| tRNA pseudouridine synthase A [Methanosaeta concilii GP6]
Length = 271
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
K+A+ AY G Y G QK P T++ + AL G + D+ + RTD+
Sbjct: 2 KVALKLAYLGDNYYGFQKQPDRVTVDSQVRRALAQIGVIHG---------DFCYAGRTDR 52
Query: 121 GVSAVGQVVSGRFCIDPPGL-VER---LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
GVSA+GQV+ F ID + + R +N LP I + + F+A+ R Y
Sbjct: 53 GVSALGQVID--FWIDEDKIDLTRPRCVNGRLPRDIWTWAWSIAPVGFSARWNALWREYQ 110
Query: 177 YLLPVFALD 185
YLL LD
Sbjct: 111 YLLWHPGLD 119
>gi|164659606|ref|XP_001730927.1| hypothetical protein MGL_1926 [Malassezia globosa CBS 7966]
gi|159104825|gb|EDP43713.1| hypothetical protein MGL_1926 [Malassezia globosa CBS 7966]
Length = 604
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 61/148 (41%), Gaps = 30/148 (20%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGA----KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
RKIA+ F Y G Y G+ G T+E + EAL + V + DW+R
Sbjct: 80 RKIALRFCYDGGSYSGLAAQMGQMTPLPTVEETIWEALCTARLVDATKSMD--DVDWSRC 137
Query: 116 ARTDKGVSAVGQVVSGRF---CIDPPGL---------------------VERLNSNLPTQ 151
RTD GVSA GQVV+ C+D L V LN LP
Sbjct: 138 GRTDAGVSAAGQVVALWIRSRCVDERPLRYKTGEAAIPLTDTSDEELPYVATLNRLLPPT 197
Query: 152 IRIFGYKRVTASFNAKKFCDQRRYVYLL 179
IRI + V +F+A+ C R Y Y
Sbjct: 198 IRIQAWSPVRPTFSARFDCVYRHYKYFF 225
>gi|440696638|ref|ZP_20879093.1| tRNA pseudouridine synthase A [Streptomyces turgidiscabies Car8]
gi|440281146|gb|ELP68807.1| tRNA pseudouridine synthase A [Streptomyces turgidiscabies Car8]
Length = 281
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 20/127 (15%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAK-TIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
++ + +Y G G+ G + PG + T++G++E+AL R YD + RTD
Sbjct: 11 RVRLDLSYDGTGFSGWARQPGGRRTVQGEIEDAL------RTVTRSGEATYDLTVAGRTD 64
Query: 120 KGVSAVGQVVSGRFCIDPP---------GLVERLNSNLPTQIRIFGYKRVTASFNAKKFC 170
GV A GQV +D P L++RL LP +R++ FNA+
Sbjct: 65 TGVHARGQVAH----VDLPVAVWDEHREKLLKRLAGRLPKDVRVWRAAEAPGGFNARFAA 120
Query: 171 DQRRYVY 177
RRYVY
Sbjct: 121 LWRRYVY 127
>gi|294656526|ref|XP_458796.2| DEHA2D07722p [Debaryomyces hansenii CBS767]
gi|199431537|emb|CAG86940.2| DEHA2D07722p [Debaryomyces hansenii CBS767]
Length = 444
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 72/146 (49%), Gaps = 23/146 (15%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+R IA+ FAY G Y G+ Q P T+E ++ +AL S +++ D P +++R
Sbjct: 83 KRFIALRFAYVGWDYNGLNFQYEPTPLPTVEEEILKALAKSKLITQVD---PACCNFSRC 139
Query: 116 ARTDKGVSAVGQVVS--GRFCIDP-------------PGLVERLNSNLPTQIRIFGY-KR 159
RTDKGVSA+ QV+S R + P P L LNS LPT IRI R
Sbjct: 140 GRTDKGVSAMNQVISLDVRSNLIPEDQLSSSNDDKELPYLA-ILNSLLPTDIRITAVCLR 198
Query: 160 VTASFNAKKFCDQRRYVYLLPVFALD 185
F+A+ C R Y Y+ + LD
Sbjct: 199 PPPKFDARFSCSYRHYRYIFRKYDLD 224
>gi|367007832|ref|XP_003688645.1| hypothetical protein TPHA_0P00530 [Tetrapisispora phaffii CBS 4417]
gi|357526955|emb|CCE66211.1| hypothetical protein TPHA_0P00530 [Tetrapisispora phaffii CBS 4417]
Length = 422
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 66/147 (44%), Gaps = 21/147 (14%)
Query: 60 RKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
R IA+ FAY G Y G+ QK P A T+EG + +A+ + NP + ++R
Sbjct: 64 RFIALKFAYLGWNYNGLAIQKEPTALPTVEGVIVDAMNKCKLIPSI---NPSDFKFSRCG 120
Query: 117 RTDKGVSAVGQVVS--------------GRFCIDPPGLVERLNSNLPTQIRIFGY-KRVT 161
RTDKGVSA+ QV+S F + LN LP IRI R
Sbjct: 121 RTDKGVSAMNQVISLNVRSNLTPEQQMNSEFDSKEIQYINILNQLLPDDIRISAVCLRPP 180
Query: 162 ASFNAKKFCDQRRYVYLLPVFALDSSS 188
F+A+ C R Y YL L+ S+
Sbjct: 181 TGFDARFSCQYRHYKYLFKKDGLNISA 207
>gi|325288607|ref|YP_004264788.1| tRNA pseudouridine synthase A [Syntrophobotulus glycolicus DSM
8271]
gi|324964008|gb|ADY54787.1| tRNA pseudouridine synthase A [Syntrophobotulus glycolicus DSM
8271]
Length = 267
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 62 IAIFFAYCGVGYQGMQKNP--GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
I + AY G Y G Q P KTI+G+LE+A R + RTD
Sbjct: 4 ICLRLAYDGTQYHGFQSQPEEHGKTIQGELEKAW---------KRLAQEEIKIVTAGRTD 54
Query: 120 KGVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
KGV A GQV++ + P + +NS LP +IRI K V A FNA+ +RY Y
Sbjct: 55 KGVHAAGQVINFKSAARIPQDKIPIAMNSVLPEEIRILEAKLVGAEFNARTSAYWKRYDY 114
>gi|448349227|ref|ZP_21538070.1| tRNA pseudouridine synthase A [Natrialba taiwanensis DSM 12281]
gi|445641013|gb|ELY94097.1| tRNA pseudouridine synthase A [Natrialba taiwanensis DSM 12281]
Length = 287
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G Y G Q+ P T+E +L AL S +V P Y A + RTD GV
Sbjct: 3 AFRLAYDGTAYHGFQRQPDVATVEDELFAAL-ESLSVLATHADKPTGY--AAAGRTDAGV 59
Query: 123 SAVGQVVSGRFCIDPPGLV--ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
SA+ Q V+ D P + LNS+LP IR + F+A +R Y Y L
Sbjct: 60 SALAQTVA----FDAPDWLTPRALNSDLPADIRAWAAADAPDEFHATHHARRREYTYQL 114
>gi|203283942|ref|YP_002221682.1| pseudouridylate synthase I [Borrelia duttonii Ly]
gi|203287485|ref|YP_002222500.1| pseudouridylate synthase I [Borrelia recurrentis A1]
gi|238690561|sp|B5RLM0.1|TRUA_BORDL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238690579|sp|B5RQJ5.1|TRUA_BORRA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|201083385|gb|ACH92976.1| pseudouridylate synthase I [Borrelia duttonii Ly]
gi|201084705|gb|ACH94279.1| pseudouridylate synthase I [Borrelia recurrentis A1]
Length = 245
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 15/140 (10%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
+KI AY G Y G Q P TI+G++E+AL ++ N + + RTD
Sbjct: 2 KKILAEIAYDGSLYHGFQIQPTKPTIQGEIEKAL---------EKINKTKVKIQSAGRTD 52
Query: 120 KGVSAVGQVVSG--RFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
KGV A Q++S + I+ L +NS L IRI K V+ F + +R+Y Y
Sbjct: 53 KGVHAKRQIISFYIKININLKNLKTAINSLLKNDIRIIKLKYVSNEFQPRFHAKKRKYTY 112
Query: 178 LLPVFALDSSSHRDRESVMA 197
+ L++ +H E A
Sbjct: 113 ----YILNNENHYPWEEYQA 128
>gi|336254963|ref|YP_004598070.1| tRNA pseudouridine synthase A [Halopiger xanaduensis SH-6]
gi|335338952|gb|AEH38191.1| tRNA pseudouridine synthase A [Halopiger xanaduensis SH-6]
Length = 281
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G Y G Q+ P T+E + +AL S V ++D P Y A + RTD+GV
Sbjct: 6 AFRLAYDGTDYYGFQRQPDVPTVEDAVFDAL-RSLEVLDQDADKPDGY--AAAGRTDRGV 62
Query: 123 SAVGQVVSGRFCIDPPGLVE--RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
SA+ Q ++ + P +E LN+ LP +R + F+A +R Y Y L
Sbjct: 63 SALAQTIA----FEAPDWLEPRALNAELPADVRAWASADAPDGFHATHHASRREYTYHL 117
>gi|224118612|ref|XP_002331405.1| predicted protein [Populus trichocarpa]
gi|222873619|gb|EEF10750.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 47 GADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALF----HSGAVSER 102
G + K R I +Y G + G QK PG T++G +E++L A +
Sbjct: 92 GVSNVDKSGRWARVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKSLGRFVDEKKAQQLK 151
Query: 103 DRGNPRRYDWARSARTDKGVSAVGQVVS---GRFCIDPPGLVERLNSNLPTQIRIFGYKR 159
++ P + + RTDKGVSA+ QV S R + P + + +N P ++R+
Sbjct: 152 EQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKVRVESISE 211
Query: 160 VTASFNAKKFCDQRRYVYLLPV 181
V+ +F+ RRY+Y+ P+
Sbjct: 212 VSRAFHPNFSAKWRRYLYIFPL 233
>gi|386859243|ref|YP_006271949.1| tRNA pseudouridine synthase A [Borrelia crocidurae str. Achema]
gi|384934124|gb|AFI30797.1| tRNA pseudouridine synthase A [Borrelia crocidurae str. Achema]
Length = 245
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 15/140 (10%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
+KI AY G Y G Q P TI+G++E+AL ++ N + + RTD
Sbjct: 2 KKILAEIAYDGSLYHGFQIQPTKPTIQGEIEKAL---------EKINKTKVKIQSAGRTD 52
Query: 120 KGVSAVGQVVSG--RFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
KGV A Q++S + I+ L +NS L IRI K V+ F + +R+Y Y
Sbjct: 53 KGVHAKRQIISFYIKININLKNLKTAINSLLKNDIRIIKLKYVSNEFQPRFHAKKRKYTY 112
Query: 178 LLPVFALDSSSHRDRESVMA 197
+ L++ +H E A
Sbjct: 113 ----YILNNENHYPWEEYKA 128
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 345 RFNRILKHYVGSHNFHNFT-TRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
R N + + +G H+F F+ R K Y+ F + F+ E++G SF
Sbjct: 139 RLNTMAEMLIGLHDFTTFSCIRDKTNSKLKEIYLAKFKKKN-------KFIVFEIIGSSF 191
Query: 404 MLHQIRKMIGLAVAV-VRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIF 455
+ +R ++G + + ++N + +LI+ K+ TAP L+LD +
Sbjct: 192 LWKMVRSIVGTMIDIEIKNESVDTLIKILKSKNRKYARTTAPAKALFLDRVFY 244
>gi|448414876|ref|ZP_21577825.1| tRNA pseudouridine synthase A [Halosarcina pallida JCM 14848]
gi|445681573|gb|ELZ34003.1| tRNA pseudouridine synthase A [Halosarcina pallida JCM 14848]
Length = 284
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAV-SERDRGNPRRYDWARSARTDKG 121
A AY G + G Q+ P T+E +L +AL GA +E DR P +A + RTD G
Sbjct: 15 AFRIAYDGRPFYGFQRQPSVPTVENELFDALDRLGAFDAEADRKPP---GYAAAGRTDAG 71
Query: 122 VSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
VSA+GQ V G C P R LN+ LP +R + F+A +R YVY
Sbjct: 72 VSALGQTV-GFDC--PEWCTPRALNAELPADVRAWAAADAPEDFHATHDAVRREYVY 125
>gi|448312986|ref|ZP_21502716.1| tRNA pseudouridine synthase A [Natronolimnobius innermongolicus JCM
12255]
gi|445599645|gb|ELY53674.1| tRNA pseudouridine synthase A [Natronolimnobius innermongolicus JCM
12255]
Length = 293
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G GY G Q+ P T+E L + L G ++ D P Y A + RTD GV
Sbjct: 5 AFRIAYDGAGYHGFQRQPDVATVEDALFDGLRELGVLAA-DADKPAGY--AAAGRTDAGV 61
Query: 123 SAVGQVVSGRFCIDPP-GLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
SA+ Q + C++ P L R N+ LP IR + F+A +R Y Y L
Sbjct: 62 SALAQTI----CLEAPEWLTPRAFNAGLPADIRAWAAVDAPPDFHATHDASERTYSYHL 116
>gi|449017039|dbj|BAM80441.1| pseudouridine synthase 3 [Cyanidioschyzon merolae strain 10D]
Length = 467
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 110 YDWARSARTDKGVSAVGQVVSGRFCIDPPG-------LVERLNSNLPTQIRIFGYKRVTA 162
+ +AR RTDKGVSA+GQVVS PPG + LN LP +R++ + V
Sbjct: 141 WQYARGGRTDKGVSAIGQVVSLLVRCPPPGTGTNFYDYIHLLNRELPASVRVYAWAPVAD 200
Query: 163 SFNAKKFCDQRRYVYLLP 180
F+A+ R Y Y +P
Sbjct: 201 DFSARFSAYSRTYKYFVP 218
>gi|448429769|ref|ZP_21584634.1| tRNA pseudouridine synthase A [Halorubrum tebenquichense DSM 14210]
gi|445689825|gb|ELZ42049.1| tRNA pseudouridine synthase A [Halorubrum tebenquichense DSM 14210]
Length = 322
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 49 DSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERD---RG 105
DS+++ + + ++A Y G GY G Q+ P A T+ L AL G V D
Sbjct: 4 DSSSRETVTRAFRVA----YDGRGYAGFQRQPHAHTVSDALLAALAEHGIVERGDGPTHA 59
Query: 106 NPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASF 164
P Y A + RTD GVSAV Q V+ P L R N +LP +R++ V F
Sbjct: 60 TPPGY--AAAGRTDAGVSAVAQTVA---FEAPTWLTPRAFNGHLPGAVRVWAAADVGDDF 114
Query: 165 NAKKFCDQRRYVYLL 179
+A +R Y Y L
Sbjct: 115 HATHDAVRRTYRYHL 129
>gi|302802211|ref|XP_002982861.1| hypothetical protein SELMODRAFT_117099 [Selaginella moellendorffii]
gi|300149451|gb|EFJ16106.1| hypothetical protein SELMODRAFT_117099 [Selaginella moellendorffii]
Length = 289
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEAL--FHSG--AVSERDRGNPRRYDWA 113
+RR I +Y G + G QK PG T++ LE+ L F G A + +G + +
Sbjct: 10 ERRTFKIVLSYSGTAFAGWQKQPGFLTVQSVLEKQLGRFVDGKRASNLEKQGKIKEALVS 69
Query: 114 RSARTDKGVSAVGQVVS----GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKF 169
+ RTDKGV A GQV S R C + + +NS +PT +R V F+
Sbjct: 70 VAGRTDKGVHACGQVCSFYTWMRECKE-EDVKSAVNSAMPTILRAVSASEVNRDFHPIFS 128
Query: 170 CDQRRYVYLLPVFALD 185
RRY+Y+ P+ + D
Sbjct: 129 AKWRRYIYIFPLRSRD 144
>gi|392406879|ref|YP_006443487.1| pseudouridylate synthase I [Anaerobaculum mobile DSM 13181]
gi|390620015|gb|AFM21162.1| pseudouridylate synthase I [Anaerobaculum mobile DSM 13181]
Length = 261
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+ A +Y G + G Q+ G T++ LE+AL S ++G R + RTD+
Sbjct: 3 RYAALISYDGSAFHGFQRQRGLPTVQEALEDAL------SLLNKGMVRV---TGAGRTDR 53
Query: 121 GVSAVGQVVSGRFCI--DPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A+GQVVS P L + L +NLP+ I +F V F+A+K R+Y Y
Sbjct: 54 GVHALGQVVSFDMFWPHGPDALRKALEANLPSSIGVFEVVPVDEGFDARKSALWRKYAYF 113
Query: 179 L 179
+
Sbjct: 114 I 114
>gi|421858395|ref|ZP_16290665.1| pseudouridylate synthase [Paenibacillus popilliae ATCC 14706]
gi|410832074|dbj|GAC41102.1| pseudouridylate synthase [Paenibacillus popilliae ATCC 14706]
Length = 273
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 25/127 (19%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALF-----HSGAVSERDRGNPRRYDWAR 114
R I + +Y G Y G Q PG TI+G +EEA+ H+ +
Sbjct: 2 RNIGMLVSYDGTAYSGYQTQPGRDTIQGRIEEAIHMLTKEHATVTA-------------- 47
Query: 115 SARTDKGVSAVGQVVSGRFCIDPPGLVER----LNSNLPTQIRIFGYKRVTASFNAKKFC 170
S RTD GV A+GQVV+ F + +ER +NS LP I I+ SF+A+
Sbjct: 48 SGRTDAGVHALGQVVN--FATESSIPIERWCAAMNSRLPDDIVIWDAWEAPKSFHARFSA 105
Query: 171 DQRRYVY 177
++ Y Y
Sbjct: 106 KRKTYRY 112
>gi|448390191|ref|ZP_21565971.1| tRNA pseudouridine synthase A [Haloterrigena salina JCM 13891]
gi|445667519|gb|ELZ20161.1| tRNA pseudouridine synthase A [Haloterrigena salina JCM 13891]
Length = 295
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G GY G Q+ P T+E + +AL V D P Y A + RTD GV
Sbjct: 5 AFRIAYDGTGYHGFQRQPDVPTVEDAIFDAL-RDLEVLAPDADRPDGY--AAAGRTDAGV 61
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPV 181
SA+ Q V+ P L R LN LP IR + F+A ++R Y Y L
Sbjct: 62 SALAQTVA---LEAPDWLTPRALNGELPADIRAWAAADAPREFHATHHAERREYAYHLYA 118
Query: 182 FALDSSSHRDRES 194
D S RDR +
Sbjct: 119 PPAD-SRRRDRAA 130
>gi|452825099|gb|EME32098.1| tRNA pseudouridine synthase A [Galdieria sulphuraria]
Length = 433
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 63/131 (48%), Gaps = 15/131 (11%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+RKIA+ Y G + G P + T+E L AL + + R+ ++R+AR
Sbjct: 66 KRKIALRICYLGWRFDGFASQPHSDNTVEEHLFRALLKTKLIENREGSC-----YSRAAR 120
Query: 118 TDKGVSAVGQVVS--GRFCIDPP--GLVER-----LNSNLPTQIRIFGYKRVTASFNAKK 168
TDKGVSA+ VVS R I PP G VE LN LP+ I I G+ V F+A+
Sbjct: 121 TDKGVSAIENVVSLTVRSHIIPPSNGEVELDYPRILNGVLPSGIWITGWTSVDPDFHARF 180
Query: 169 FCDQRRYVYLL 179
R Y Y
Sbjct: 181 SASYRVYHYYF 191
>gi|302818580|ref|XP_002990963.1| hypothetical protein SELMODRAFT_132613 [Selaginella moellendorffii]
gi|300141294|gb|EFJ08007.1| hypothetical protein SELMODRAFT_132613 [Selaginella moellendorffii]
Length = 289
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEAL--FHSG--AVSERDRGNPRRYDWA 113
+RR I +Y G + G QK PG T++ LE+ L F G A + +G + +
Sbjct: 10 ERRTFKIVLSYSGTAFAGWQKQPGFLTVQSVLEKQLGRFVDGKRASNLEKQGKIKEALVS 69
Query: 114 RSARTDKGVSAVGQVVS----GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKF 169
+ RTDKGV A GQV S R C + + +NS +PT +R V F+
Sbjct: 70 VAGRTDKGVHACGQVCSFYTWMRECKE-EDVKSAVNSAMPTILRAVSASEVNRDFHPIFS 128
Query: 170 CDQRRYVYLLPVFALD 185
RRY+Y+ P+ + D
Sbjct: 129 AKWRRYIYIFPLRSRD 144
>gi|449518731|ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
Length = 444
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALF----HSGAVSERDRGNPRRYDWAR 114
R I +Y G + G QK PG T++G +E +L A +D+ P
Sbjct: 117 RATFKIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALV 176
Query: 115 SARTDKGVSAVGQVVS---GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCD 171
+ RTDKGV+A+ QV S R + P + + +NS P ++R +V+ F+
Sbjct: 177 AGRTDKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAK 236
Query: 172 QRRYVYLLPV 181
RRY+Y+LP+
Sbjct: 237 WRRYLYILPL 246
>gi|443732826|gb|ELU17390.1| hypothetical protein CAPTEDRAFT_127384, partial [Capitella teleta]
Length = 372
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 24/141 (17%)
Query: 59 RRKIAIFFAYCGVGYQGM-QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+R +A F Y G + G + +KTIE + +A + + RD + R R
Sbjct: 3 KRHVAFKFTYLGWDFNGFADQETSSKTIEAAVFDAFVKTKLIESRDTSK-----YQRCGR 57
Query: 118 TDKGVSAVGQVVSGRF---CIDPPG---------------LVERLNSNLPTQIRIFGYKR 159
TDKGVSA QV+S ++ PG + LN LP +IR+ +
Sbjct: 58 TDKGVSAFTQVISLEVRTNLLEGPGVRVPEDNASRGKEMPFSKMLNGCLPPEIRVIAWCP 117
Query: 160 VTASFNAKKFCDQRRYVYLLP 180
V F+A+ C R Y Y P
Sbjct: 118 VDEDFSARFSCQSRTYKYFFP 138
>gi|335998536|ref|ZP_08564447.1| tRNA pseudouridine synthase A [Lactobacillus ruminis SPM0211]
gi|347524814|ref|YP_004831562.1| tRNA pseudouridine synthase [Lactobacillus ruminis ATCC 27782]
gi|335348391|gb|EGM49897.1| tRNA pseudouridine synthase A [Lactobacillus ruminis SPM0211]
gi|345283773|gb|AEN77626.1| tRNA pseudouridine synthase [Lactobacillus ruminis ATCC 27782]
Length = 250
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R+ I AY G + G Q P +T++ LE A+ + N S RTD
Sbjct: 3 RRYKITLAYDGTNFAGFQVQPNQRTVQSVLEAAV-------NKMSKNSDYITIYGSGRTD 55
Query: 120 KGVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A+GQVV F D P G+++ LNS LP + G + V F+A+ +RY+Y
Sbjct: 56 AGVHALGQVVHFDFPHDIPAEGMLKGLNSMLPLDCEVVGCEIVPNDFHARFTTHGKRYMY 115
>gi|87308089|ref|ZP_01090231.1| Pseudouridylate synthase (tRNA [Blastopirellula marina DSM 3645]
gi|87289171|gb|EAQ81063.1| Pseudouridylate synthase (tRNA [Blastopirellula marina DSM 3645]
Length = 260
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R + + +Y G Y G Q +TI+G LE L R G S RTD
Sbjct: 7 RALQLIVSYDGTNYAGWQIQNDQRTIQGALERTLLKITGEKIRVTG---------SGRTD 57
Query: 120 KGVSAVGQVVSGRF--CIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A+GQVVS R + P + LN+ LP I + + FNA ++RY Y
Sbjct: 58 SGVHAIGQVVSFRMQSQLSPDVMRRALNAELPPDIVVQSARNAIPEFNAIDCAIKKRYRY 117
Query: 178 LL 179
LL
Sbjct: 118 LL 119
>gi|194706182|gb|ACF87175.1| unknown [Zea mays]
gi|195612012|gb|ACG27836.1| hypothetical protein [Zea mays]
gi|414867030|tpg|DAA45587.1| TPA: pseudouridylate synthase isoform 1 [Zea mays]
gi|414867031|tpg|DAA45588.1| TPA: pseudouridylate synthase isoform 2 [Zea mays]
gi|414867032|tpg|DAA45589.1| TPA: pseudouridylate synthase isoform 3 [Zea mays]
gi|414867033|tpg|DAA45590.1| TPA: pseudouridylate synthase isoform 4 [Zea mays]
Length = 457
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
C +R +A+ Y G + G IE +E +F + ++ N + ++R
Sbjct: 117 CPKRLVALKVMYFGQRFYGFS---SEGNIEPTVESEIFKALERAKLMVANRKESCYSRCG 173
Query: 117 RTDKGVSAVGQVVS--GRFCIDPPG-----------LVERLNSNLPTQIRIFGYKRVTAS 163
RTDKGVSA GQV+S R I G V+ LN LP IR+ G+ V A
Sbjct: 174 RTDKGVSATGQVISLYLRSNIKDVGGDMLDERSEIDYVKVLNRILPRDIRVLGWCPVPAD 233
Query: 164 FNAKKFCDQRRYVYLL 179
F+A+ C R Y YL
Sbjct: 234 FHARFTCLSREYKYLF 249
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFL- 394
F G+ + + ++G H+F NF A + RR+I F + D L
Sbjct: 249 FWKGDLDILEMQKAASKFIGEHDFRNFCKMDAANVSNYRRHITEFTISACDRRSNNDELC 308
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLD 451
+ G +F+ HQ+R M+ + + + S++++ L P APE+ L L
Sbjct: 309 SMTIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRKPQYKMAPELPLILQ 368
Query: 452 ECIFASYN 459
C+F N
Sbjct: 369 SCLFDKAN 376
>gi|452206040|ref|YP_007486162.1| tRNA pseudouridine synthase TruA [Natronomonas moolapensis 8.8.11]
gi|452082140|emb|CCQ35392.1| tRNA pseudouridine synthase TruA [Natronomonas moolapensis 8.8.11]
Length = 277
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G GY+G Q+ P +T+E +L AL G D G+P Y A + RTD GV
Sbjct: 3 AFRLAYDGSGYRGFQRQPHGETVEDELFAALRELGV--GFDGGSPAGY--AAAGRTDAGV 58
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPV 181
SA Q V+ P L R L+ LP IR + V F+A +R Y Y L
Sbjct: 59 SARAQTVA---FEAPAWLTPRALDGELPGAIRAWASADVEPGFHATHDATERVYKYFLHA 115
Query: 182 FALDSSSHRDRESV 195
A ++ + D +V
Sbjct: 116 PAAETGAREDVTAV 129
>gi|383620985|ref|ZP_09947391.1| tRNA pseudouridine synthase A [Halobiforma lacisalsi AJ5]
gi|448692514|ref|ZP_21696353.1| tRNA pseudouridine synthase A [Halobiforma lacisalsi AJ5]
gi|445787526|gb|EMA38267.1| tRNA pseudouridine synthase A [Halobiforma lacisalsi AJ5]
Length = 366
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSE--RDRGNP--RRYDWARSART 118
A AY G Y G Q+ P T+EG + AL G D P R +A + RT
Sbjct: 52 AYRIAYDGTDYHGFQRQPSVPTVEGAIFAALRSLGVFDPDAADDSGPAVRPAGYAAAGRT 111
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
DKGVSA+ Q ++ P L R LN LP +R + F+A +R Y Y
Sbjct: 112 DKGVSAIAQTIAFEA---PDWLTPRALNGELPADVRAWAVADAPDGFHATHHARRREYTY 168
Query: 178 LL 179
L
Sbjct: 169 QL 170
>gi|449439176|ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
Length = 444
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALF----HSGAVSERDRGNPRRYDWAR 114
R I +Y G + G QK PG T++G +E +L A +D+ P
Sbjct: 117 RATFKIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALV 176
Query: 115 SARTDKGVSAVGQVVS---GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCD 171
+ RTDKGV+A+ QV S R + P + + +NS P ++R +V+ F+
Sbjct: 177 AGRTDKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAK 236
Query: 172 QRRYVYLLPV 181
RRY+Y+LP+
Sbjct: 237 WRRYLYILPL 246
>gi|403375889|gb|EJY87920.1| Pseudouridine synthase [Oxytricha trifallax]
Length = 482
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 10/151 (6%)
Query: 36 DDERDLIPAAAGADSTTKRQL----CKRRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDL 89
++++ LIP + +R K+ KIA F+Y G Y+G+ Q N +TIEG +
Sbjct: 75 ENKQKLIPPKSHHKIFNQRSFDFSKHKQVKIAFKFSYLGKDYKGLAIQTNTD-ETIEGRI 133
Query: 90 EEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRF-CIDPPGLVERLNSNL 148
AL + V +Y R RTDKGVSA+G V+S + + LN L
Sbjct: 134 FAALKRACLVQPDIPIFKSQY--TRCGRTDKGVSALGNVLSLYVRKLKDDNYCQVLNHCL 191
Query: 149 PTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
P IR+ + V A F+++ C R Y Y
Sbjct: 192 PADIRMISFSEVPAHFDSRFSCIYREYKYFF 222
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 351 KHYVGSHNFHNFTTRTKA-------EDPSARRYIISFG-ADSVVNV--EGIDFLKCEVVG 400
+ Y+G H+F NF + ++ +D + R I F +NV E + + G
Sbjct: 237 RKYLGIHDFRNFCKKDESVKLEDDEDDQNFMRRIYRFDIVQQHINVQNEKLSIWHVVIRG 296
Query: 401 QSFMLHQIRKMIGLAVAVVRNCAPQSLIET-----ALQKDVNINVPTAPEVGLYLDECIF 455
+F+ HQ+R M+ + + R +S+I+ L + N N+ A E GL L+EC F
Sbjct: 297 SAFLWHQVRCMMAVLFMIGRGEEDESVIDLLYDIEKLPERPNYNI--ASEFGLILNECGF 354
>gi|226533212|ref|NP_001145731.1| uncharacterized protein LOC100279238 [Zea mays]
gi|219884209|gb|ACL52479.1| unknown [Zea mays]
gi|414867029|tpg|DAA45586.1| TPA: pseudouridylate synthase [Zea mays]
Length = 486
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
C +R +A+ Y G + G IE +E +F + ++ N + ++R
Sbjct: 146 CPKRLVALKVMYFGQRFYGFSSE---GNIEPTVESEIFKALERAKLMVANRKESCYSRCG 202
Query: 117 RTDKGVSAVGQVVS--GRFCIDPPG-----------LVERLNSNLPTQIRIFGYKRVTAS 163
RTDKGVSA GQV+S R I G V+ LN LP IR+ G+ V A
Sbjct: 203 RTDKGVSATGQVISLYLRSNIKDVGGDMLDERSEIDYVKVLNRILPRDIRVLGWCPVPAD 262
Query: 164 FNAKKFCDQRRYVYLL 179
F+A+ C R Y YL
Sbjct: 263 FHARFTCLSREYKYLF 278
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFL- 394
F G+ + + ++G H+F NF A + RR+I F + D L
Sbjct: 278 FWKGDLDILEMQKAASKFIGEHDFRNFCKMDAANVSNYRRHITEFTISACDRRSNNDELC 337
Query: 395 KCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLD 451
+ G +F+ HQ+R M+ + + + S++++ L P APE+ L L
Sbjct: 338 SMTIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRKPQYKMAPELPLILQ 397
Query: 452 ECIFASYN 459
C+F N
Sbjct: 398 SCLFDKAN 405
>gi|448439765|ref|ZP_21588177.1| tRNA pseudouridine synthase A [Halorubrum saccharovorum DSM 1137]
gi|445690917|gb|ELZ43120.1| tRNA pseudouridine synthase A [Halorubrum saccharovorum DSM 1137]
Length = 291
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGN------PRRYDWARSA 116
A AY G Y G Q+ P A T+EG L AL G + DRG+ P Y A +
Sbjct: 10 AFRVAYDGREYAGFQRQPHATTVEGTLLRALAEHGIL---DRGDGPTHATPPGY--AAAG 64
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
RTD GVSAV Q V+ F P L R N +LP +R++ F+A +R Y
Sbjct: 65 RTDAGVSAVAQTVA--FAA-PDWLTPRAFNGHLPGSVRVWAAADAPTDFHATHDAVRRTY 121
Query: 176 VYLLPVFALDSSSHRD 191
Y L A + RD
Sbjct: 122 RYHLYAPARGDGADRD 137
>gi|170068141|ref|XP_001868750.1| pseudouridylate synthase [Culex quinquefasciatus]
gi|167864259|gb|EDS27642.1| pseudouridylate synthase [Culex quinquefasciatus]
Length = 470
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 65/153 (42%), Gaps = 27/153 (17%)
Query: 57 CKRRKIAIFFAYCGVGYQGM-QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
C +R I + F Y G +QG + A TIE L AL + R+ N + R
Sbjct: 71 CHKRHILLRFFYLGWDFQGYATQEDSANTIEHHLFNALTRVCLIESRESSN-----YHRC 125
Query: 116 ARTDKGVSAVGQVVS----GRFCIDPP-------------GLVERLNSNLPTQIRIFGY- 157
RTDKGVSA QVVS +F PP + LN LP +IR +
Sbjct: 126 GRTDKGVSAFHQVVSLDVRSKF---PPESQLAPESLQNELNYCQLLNRVLPAEIRCVAWM 182
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFALDSSSHR 190
+++A+ C R Y Y P +LD + R
Sbjct: 183 PTANPNYSARFDCRSRTYRYFFPRGSLDVDAMR 215
>gi|345005852|ref|YP_004808705.1| tRNA pseudouridine synthase A [halophilic archaeon DL31]
gi|344321478|gb|AEN06332.1| tRNA pseudouridine synthase A [halophilic archaeon DL31]
Length = 270
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 66 FAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
AY G Y G Q+ P T+E L L G + + D+ P ++A + RTD GVSAV
Sbjct: 6 LAYDGRPYYGYQRQPDVPTVEDTLFAGLEAIGVLEDADQKPP---NYAAAGRTDAGVSAV 62
Query: 126 GQVV---SGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
Q V + +C PG V N+ LP +R + V F+ + QR YVY L
Sbjct: 63 AQTVAFDAPEWCT--PGAV---NAELPGSVRAWAAAAVDGDFHPTRDPVQRTYVYHL 114
>gi|323340405|ref|ZP_08080662.1| tRNA pseudouridine synthase A [Lactobacillus ruminis ATCC 25644]
gi|417974596|ref|ZP_12615405.1| tRNA pseudouridine synthase A [Lactobacillus ruminis ATCC 25644]
gi|323092181|gb|EFZ34796.1| tRNA pseudouridine synthase A [Lactobacillus ruminis ATCC 25644]
gi|346329042|gb|EGX97352.1| tRNA pseudouridine synthase A [Lactobacillus ruminis ATCC 25644]
Length = 250
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R+ I AY G + G Q P +T++ LE A+ + N S RTD
Sbjct: 3 RRYKITLAYDGTNFAGFQVQPNQRTVQSVLEAAV-------NKMSKNSDYITIYGSGRTD 55
Query: 120 KGVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A+GQVV F D P G+++ LNS LP + G + V F+A+ +RY+Y
Sbjct: 56 AGVHALGQVVHFDFPHDIPAEGMLKGLNSMLPLACEVVGCEIVPNDFHARFTTHGKRYMY 115
>gi|257126804|ref|YP_003164918.1| tRNA pseudouridine synthase A [Leptotrichia buccalis C-1013-b]
gi|257050743|gb|ACV39927.1| tRNA pseudouridine synthase A [Leptotrichia buccalis C-1013-b]
Length = 251
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
K+R + I + Y G + G Q+ G KT++G++E+ + + + + S R
Sbjct: 2 KKRNVKIVYQYDGSKFCGFQRQMGIKTVQGEIEKVI---------SKTFFQNINMISSGR 52
Query: 118 TDKGVSAVGQVVSGRFCID---PPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQR 173
TDKGV A+ QV F ID P ++R LN L +I+I + + FN++ R
Sbjct: 53 TDKGVHAIEQV--SNFMIDQNIPLNAIKRQLNKRLKGEIKILDIEEMDEKFNSRFDAQNR 110
Query: 174 RYVYLLPV 181
Y+Y++ V
Sbjct: 111 TYLYIMKV 118
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKA-EDPSARRYIISF-----GADSVVNVEGIDFLKCEV 398
+F +I+ ++G H+F +F + KA +P + I+ G + +N+ E+
Sbjct: 141 KFQKIMLEFIGKHDFSSFMKKDKAYRNPVREIFFINCYYDKNGKEKQINI--------EI 192
Query: 399 VGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQK-DVNINVPTAPEVGLYL 450
G F+ +R MIG A+AV ++ I+ L+ D + A GLYL
Sbjct: 193 CGNGFLKTMVRIMIGSALAVYFGKEEKNYIKKKLENPDADGKKILAGSEGLYL 245
>gi|21673806|ref|NP_661871.1| tRNA pseudouridine synthase A [Chlorobium tepidum TLS]
gi|42559829|sp|Q8KDR7.1|TRUA_CHLTE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|21646936|gb|AAM72213.1| tRNA pseudouridine synthase A [Chlorobium tepidum TLS]
Length = 247
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPG-AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+R I + Y G GY G Q+ PG T++G++E L ER P D A R
Sbjct: 5 KRTIKMQIEYDGTGYSGWQRQPGDVVTVQGEIERVL-------ERIMQEPVSIDGA--GR 55
Query: 118 TDKGVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
TD GV A QV S C P L+ NS LP+ IRI ++ SF+A+ R Y
Sbjct: 56 TDSGVHARRQVASFATCSPMPLGRLIYSANSLLPSTIRINAMRQAPESFHARFSATSREY 115
Query: 176 VYLL 179
Y L
Sbjct: 116 RYFL 119
>gi|448720330|ref|ZP_21703310.1| tRNA pseudouridine synthase A [Halobiforma nitratireducens JCM
10879]
gi|445782381|gb|EMA33227.1| tRNA pseudouridine synthase A [Halobiforma nitratireducens JCM
10879]
Length = 361
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 58/138 (42%), Gaps = 10/138 (7%)
Query: 48 ADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEAL-----FHSGAVSER 102
+D T R A AY G Y G Q+ P T+EG + AL F S
Sbjct: 8 SDGDTPSSSGPRSLRAYRIAYDGTDYYGFQRQPSVPTVEGAIFAALRSLEVFDPERESTD 67
Query: 103 DRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVT 161
N R +A + RTD GVSAV Q ++ P L R LNS+LP +R +
Sbjct: 68 TDAN-RPDGYAAAGRTDSGVSAVAQTIAFEA---PDWLTPRALNSDLPADVRAWAVADAP 123
Query: 162 ASFNAKKFCDQRRYVYLL 179
F+A +R Y Y L
Sbjct: 124 PEFHATHHATRREYTYQL 141
>gi|329767334|ref|ZP_08258859.1| tRNA pseudouridine synthase A [Gemella haemolysans M341]
gi|328836023|gb|EGF85714.1| tRNA pseudouridine synthase A [Gemella haemolysans M341]
Length = 265
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+IA+ Y G Y G Q P TI+ ++E++L + ++ + R Y S RTD
Sbjct: 2 RIALLCRYDGSNYHGFQIQPNNNTIQEEIEKSL------KKINKKDVRLY---MSGRTDS 52
Query: 121 GVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A GQV+ ++ P V+ LN+ +P IRI G V+ F+ + Q+ Y Y
Sbjct: 53 GVHAYGQVLHFDTDLNIPDVAWVKALNATIPKDIRIVGATTVSEDFHVRYNSTQKTYYYK 112
Query: 179 LPV 181
L +
Sbjct: 113 LYI 115
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 350 LKHYVGSHNFHNFTTR-TKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQI 408
LK+++G H+F +F ++ + ED Y ++ G D +N ++F E+ G F+ + +
Sbjct: 143 LKYFIGEHDFSSFCSKNSSVEDKVRTIYSLTMGKDP-INPNIVNF---EITGNGFLYNMV 198
Query: 409 RKMIGLAVAVVRNCAPQSLIETAL-QKDVNINVPTAPEVGLYLDECIF 455
R +IG V I+ L +K+ P A GLYL E ++
Sbjct: 199 RIIIGTIQNVAAGKYEADYIKEILDKKERQFAGPKADAAGLYLKEVVY 246
>gi|254492043|ref|ZP_05105220.1| tRNA pseudouridine synthase A [Methylophaga thiooxidans DMS010]
gi|224462740|gb|EEF79012.1| tRNA pseudouridine synthase A [Methylophaga thiooxydans DMS010]
Length = 259
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+IA+ Y G + G Q P +T++G+LE+A + V+ D + RTD
Sbjct: 2 RIALGIEYAGTDFCGWQNQPNTRTVQGELEKA---ASVVANHS------IDVFAAGRTDT 52
Query: 121 GVSAVGQVVSGRFCIDPP----GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
GV A+ QVV F D G + +N+NLP I + K V FNA+ +RRY
Sbjct: 53 GVHALNQVV--HFDTDAIRSERGWLLGINANLPKDINVAWMKPVDDEFNARFTAIKRRYR 110
Query: 177 YLLPVFALDSSSHRDR 192
YL+ S+ H +R
Sbjct: 111 YLILNRLSRSAVHHNR 126
>gi|430813781|emb|CCJ28906.1| unnamed protein product [Pneumocystis jirovecii]
Length = 353
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+R IA FAY G Y G+ G KT +EE +F + ++ + R +++R RT
Sbjct: 6 QRYIAFKFAYLGWYYNGLV-TQGNKTQLPTVEETIFFALKKAKL-IDHERNCNFSRCGRT 63
Query: 119 DKGVSAVGQVVSGRFCIDPP------------GLVERLNSNLPTQIRIFGY-KRVTASFN 165
DKGV+A+GQV++ + P ++ LN LP IRI + + + F+
Sbjct: 64 DKGVTAIGQVMALNVRSNKPFNEDSEEKWSEIKYIDILNKLLPKTIRILAWCSDLPSDFS 123
Query: 166 AKKFCDQRRYVYLL 179
A+ C +R Y YL
Sbjct: 124 ARFSCQKRHYKYLF 137
>gi|288560959|ref|YP_003424445.1| tRNA pseudouridine synthase A TruA [Methanobrevibacter ruminantium
M1]
gi|288543669|gb|ADC47553.1| tRNA pseudouridine synthase A TruA [Methanobrevibacter ruminantium
M1]
Length = 290
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
++ A+ AY G + G Q+ P +T+E EE ++H + D R+ A RTD
Sbjct: 2 KRTALKIAYIGTHFHGFQRQPDVRTVE---EELIYHLRKLEYIDDLKASRFRIA--GRTD 56
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
GV ++G V+S F + V ++N++LP I+I + V F +F +R Y Y+L
Sbjct: 57 AGVHSLGNVIS--FQSEKEVRVNQINNSLPDDIQIIAWAPVRFGFKP-RFAKRRWYRYIL 113
>gi|428184307|gb|EKX53162.1| hypothetical protein GUITHDRAFT_160965 [Guillardia theta CCMP2712]
Length = 1178
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 47 GADSTTKRQLCKRRKIAIFFAYCGVGYQG--MQKNPGAKTIEGDLEEALFHSGAVS-ERD 103
G DS+ Q KRR+I + AY G +QG +NP +T+EG+L + L SGA++ +
Sbjct: 818 GVDSS---QPSKRRQICLLLAYIGNDFQGGLTHQNPSVRTVEGELLKVLRASGALNPDPS 874
Query: 104 RGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDP----PGLVERLNSNLPTQIRIF 155
+ + W + T+ GV A GQ V+ + P +ERLN+ L +RI
Sbjct: 875 MSSLEKIGWTHACLTEPGVHASGQCVTVDI-VKPRESLATFIERLNARLSGDLRIL 929
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 16/122 (13%)
Query: 348 RILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQ 407
R L + +F FT + A A I SF + V GI+ L V G +F Q
Sbjct: 1018 RGLPWFQEQWDFSLFTDKAFAN--LALGSIKSFSISEKLVVHGIEHLVLRVEGVNFFPGQ 1075
Query: 408 IRKMIGLAVAVVRNC-APQS-----------LIETALQKDVNINVPTAPEVGLYLDECIF 455
I KM+GL+V + C P+S LI L+ + I +P+ P GL LD+ ++
Sbjct: 1076 IMKMVGLSVLTL--CRKPESTDLSSLLQEATLIRKVLRHEYEITIPSPPSHGLILDKVLY 1133
Query: 456 AS 457
S
Sbjct: 1134 GS 1135
>gi|307352726|ref|YP_003893777.1| tRNA pseudouridine synthase A [Methanoplanus petrolearius DSM
11571]
gi|307155959|gb|ADN35339.1| tRNA pseudouridine synthase A [Methanoplanus petrolearius DSM
11571]
Length = 261
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+IA +Y G + G Q+ PG +T+EG+ A G S+ R + S RTD
Sbjct: 2 RIAFLVSYIGTDFYGSQQQPGIRTVEGEFIGACIDLGLFSDW-----RDARFQFSGRTDA 56
Query: 121 GVSAVGQVVSGRFCID-PPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
GV A Q+ + F D P V +N LP IR G+ V FN + +R Y Y
Sbjct: 57 GVHARSQICA--FDTDYPERAVSAINRKLPGDIRCRGWAGVPEGFNPRFEVSERIYRYFF 114
Query: 180 PVFALD 185
P LD
Sbjct: 115 PDGNLD 120
>gi|321464475|gb|EFX75483.1| hypothetical protein DAPPUDRAFT_323292 [Daphnia pulex]
Length = 429
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 27/144 (18%)
Query: 59 RRKIAIFFAYCGVGYQG-MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+R + + AY G Y G + + KTIE ++ +AL + + R+ N + R R
Sbjct: 66 KRHVLLQVAYVGWDYAGFVVQEHTEKTIEAEVFKALEKTRLLESRETSN-----YHRCGR 120
Query: 118 TDKGVSAVGQVVS---------GRFCIDPPG------------LVERLNSNLPTQIRIFG 156
TDKGVS+ GQ +S G+ P G V LN LP +IR+
Sbjct: 121 TDKGVSSFGQAISIDLRSNLSEGKGVFIPDGHQAKVGNTVEIDYVGILNKVLPPEIRMIA 180
Query: 157 YKRVTASFNAKKFCDQRRYVYLLP 180
+ + S +A+ C QR Y Y P
Sbjct: 181 WAPINQSLSARFDCRQRTYHYYFP 204
>gi|448315519|ref|ZP_21505167.1| tRNA pseudouridine synthase A [Natronococcus jeotgali DSM 18795]
gi|445611692|gb|ELY65439.1| tRNA pseudouridine synthase A [Natronococcus jeotgali DSM 18795]
Length = 289
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 66 FAYCGVGYQGMQKNP--GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
AY G GY+G Q+ P T+E DL +AL G + G + +A + RTD GVS
Sbjct: 8 IAYDGSGYRGFQRQPQPDVPTVEDDLFDALRSHGVLEP---GADKPTGYAAAGRTDAGVS 64
Query: 124 AVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
A+ Q V+ P L R N LP +R + A F+A +R Y Y L
Sbjct: 65 ALAQTVAFEA---PDWLAPRAFNGELPADVRAWAVADAPADFHATHHASRREYAYHL 118
>gi|59634318|gb|AAW88358.1| pseudouridine synthase 1 [Schistosoma japonicum]
Length = 170
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWK 463
MLHQ+RKMIGL + ++R A + + + K+ +++P AP +GL L++ F+ YNKK++
Sbjct: 1 MLHQVRKMIGLVLGILRGYATEDVFDIVFCKE-RVDIPKAPGLGLMLNQVDFSCYNKKYQ 59
>gi|448284702|ref|ZP_21475958.1| tRNA pseudouridine synthase A [Natrialba magadii ATCC 43099]
gi|445569412|gb|ELY23985.1| tRNA pseudouridine synthase A [Natrialba magadii ATCC 43099]
Length = 321
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G GY G Q+ P T+E + +AL + V D P Y A + RTD GV
Sbjct: 31 AFRLAYDGTGYYGFQRQPDVPTVEDAMFDAL-RALDVLAPDADKPAGY--AAAGRTDAGV 87
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
SA+ Q V+ P L R N LP IR + F+A +R Y Y L
Sbjct: 88 SALAQTVAFEA---PDWLTPRAFNGELPADIRAWAAADAPDEFHATHHAREREYTYYL 142
>gi|428182335|gb|EKX51196.1| hypothetical protein GUITHDRAFT_134700 [Guillardia theta CCMP2712]
Length = 706
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 393 FLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIET--ALQKDVNINVPTAPEVGLYL 450
F+K E+ SFMLHQIRKMIG +AV+ P+ ++ ALQ D + P AP GL L
Sbjct: 445 FVKIEICANSFMLHQIRKMIGTCLAVLHGSIPELYLDMPKALQGDYRLPCPLAPGSGLIL 504
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 46/193 (23%)
Query: 29 MSATSTSDDERDLIPAAAGADSTTKR-QLCKRRKIAIFFAYCGVGYQGMQ---------- 77
M A ++ RD +P AAG T+ R KR I Y G + G Q
Sbjct: 158 MDAQGQAETLRDEVPKAAGQGGTSYRSHKLKRLNSLILVGYLGTKFCGSQIQLKPRSTVK 217
Query: 78 -----------------------KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
+ T+E +L E +G ++ + NP++ +R
Sbjct: 218 RRDQPSGEMPDDVSEDTGETDGTRGFAHPTVEQELMEVCHQAGLIAVLNPENPKQLCLSR 277
Query: 115 SARTDKGVSAVGQVVSGRFCI-------DPPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
++RTDKGV A V+S + + + G+ + + +Q Y + A+
Sbjct: 278 ASRTDKGVHAALNVISMKLQLNRSTGHDEADGVHVEVKAMTGSQ-----YYLTPPASGAR 332
Query: 168 KFCDQRRYVYLLP 180
C R Y YLLP
Sbjct: 333 NICSLRTYEYLLP 345
>gi|385802497|ref|YP_005838897.1| tRNA-pseudouridine synthase A [Haloquadratum walsbyi C23]
gi|339727989|emb|CCC39107.1| tRNA pseudouridine synthase TruA [Haloquadratum walsbyi C23]
Length = 272
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G + G Q+ P T+E L +AL S V RD + + +A + RTD GV
Sbjct: 3 AFRLAYDGRPFSGFQRQPSVPTVEDSLFDAL-DSLDVFNRDT-DSKPSGYAAAGRTDAGV 60
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
SA+ Q V G C P R LNS LPT +R + V + F+A QR Y Y L
Sbjct: 61 SALRQTV-GFEC--PSWCTPRALNSELPTSVRAWASADVQSGFHATHDALQRTYTYYL 115
>gi|390365271|ref|XP_794710.3| PREDICTED: tRNA pseudouridine(38/39) synthase-like
[Strongylocentrotus purpuratus]
Length = 282
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 30/152 (19%)
Query: 60 RKIAIFFAYCGVGYQG-MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
R +A+ Y G Y G + + T+E L EAL + + R N ++R RT
Sbjct: 71 RHVALKITYLGWDYHGFVVQEDSNNTVEHHLFEALTKTKLIESRQTSN-----YSRCGRT 125
Query: 119 DKGVSAVGQVVSGRF---CIDPPGLVER---------------------LNSNLPTQIRI 154
DKGVSA GQV++ + G+++R LN LP++IR+
Sbjct: 126 DKGVSAFGQVIAIDLRTNLLQGVGVIQRLDGTAHERTGNTTEEINYPLMLNRVLPSEIRV 185
Query: 155 FGYKRVTASFNAKKFCDQRRYVYLLPVFALDS 186
+ SF+A+ R Y Y P LD+
Sbjct: 186 IAWTPAEPSFHARFDTLHRTYKYFFPAGDLDT 217
>gi|417994093|ref|ZP_12634428.1| tRNA pseudouridine synthase A [Lactobacillus casei CRF28]
gi|410530749|gb|EKQ05517.1| tRNA pseudouridine synthase A [Lactobacillus casei CRF28]
Length = 247
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 66 FAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
AY G + G Q P +T++G L++AL ++ +G D S RTD GV A+
Sbjct: 8 LAYDGTNFAGYQVQPKQRTVQGVLQKAL------TKMTKGQLVHVDG--SGRTDSGVHAL 59
Query: 126 GQVVSGRFCIDPPG------LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GQV+S D PG +++ +NS +P I I + V A F+A+ +RY+Y
Sbjct: 60 GQVIS----FDYPGNIPAESMLKAMNSLMPLDIEILKAEIVDADFHARYSAKGKRYLY 113
>gi|14591061|ref|NP_143136.1| tRNA pseudouridine synthase A [Pyrococcus horikoshii OT3]
gi|3915167|sp|O58941.1|TRUA_PYRHO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|3257659|dbj|BAA30342.1| 262aa long hypothetical pseudouridylate synthase [Pyrococcus
horikoshii OT3]
Length = 262
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 16/128 (12%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
K+A+ AY G + G Q+ P +T+EG++ +AL +SG + + ++RTDK
Sbjct: 2 KVALKIAYDGTKFHGFQRQPNVRTVEGEIIKALNNSGIMFNELKS---------ASRTDK 52
Query: 121 GVSAVGQVVSGRF---CIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GVSA+G VV+ I P + LN+ L + + +V + F+ + + + Y Y
Sbjct: 53 GVSALGNVVAITTEDERITNPMI---LNAKL-KDVWVLSAVKVPSDFHPRFWARSKVYRY 108
Query: 178 LLPVFALD 185
LP F LD
Sbjct: 109 YLPSFDLD 116
>gi|307107300|gb|EFN55543.1| hypothetical protein CHLNCDRAFT_133992 [Chlorella variabilis]
Length = 593
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 76/180 (42%), Gaps = 35/180 (19%)
Query: 16 LSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQG 75
+ P +EPD KR + RDL D + +Q R +A+ Y G Y G
Sbjct: 49 VKPYEEPDGKRRRKELRGRG---RDL-------DFSAYQQ----RYVALELLYLGHAYGG 94
Query: 76 MQKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS---- 130
+ +TIEG L AL + V RY +R RTDKGVSA+GQVV+
Sbjct: 95 FARQEHTEQTIEGHLFAALRTTRLVPAEASWQELRY--SRGGRTDKGVSALGQVVALLLR 152
Query: 131 -----------GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
+D P L LN LP IR+ G+ V F+A+ R Y YL+
Sbjct: 153 SAARTGEVQPEADVELDYPSL---LNRVLPQDIRVLGWADVPDDFSARFSAQYREYKYLI 209
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVE--GIDFLKCEVVGQS 402
R ++G H+F NF A+ + RR ++ + + G L+ + G +
Sbjct: 290 RMQEAAAFFLGEHDFRNFCKVDVAQVTNFRRRVLDCRVEELPACAWGGRRLLQLHIRGTA 349
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIF 455
F+ HQ+R M + + V R P ++ T L VP P+ L +E +
Sbjct: 350 FLWHQVRCMAAVLLMVGRGEEPPGIVATLLDPQ---QVPRKPQYTLASEEPLL 399
>gi|448353672|ref|ZP_21542447.1| tRNA pseudouridine synthase A [Natrialba hulunbeirensis JCM 10989]
gi|445639896|gb|ELY92991.1| tRNA pseudouridine synthase A [Natrialba hulunbeirensis JCM 10989]
Length = 286
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G Y G Q+ P T+EG + +AL + V D P Y A + RTD GV
Sbjct: 3 AFRLAYDGTDYYGFQRQPDVPTVEGAMFDAL-RALDVLAPDADKPAGY--AAAGRTDAGV 59
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
SA+ Q V+ P L R NS LP IR + F+A +R Y Y L
Sbjct: 60 SALAQTVAFE---TPDWLTPRAFNSKLPADIRAWTAADAPDEFHATHHAREREYTYYL 114
>gi|345893728|ref|ZP_08844521.1| tRNA pseudouridine synthase A [Desulfovibrio sp. 6_1_46AFAA]
gi|345045982|gb|EGW49880.1| tRNA pseudouridine synthase A [Desulfovibrio sp. 6_1_46AFAA]
Length = 257
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 61 KIAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
++ + AY G GY G Q K TI+G+LE AL R G S R
Sbjct: 2 RLKLLLAYLGTGYSGWQIQEKPSPPPTIQGELEAALRVLAGAPVRVHG---------SGR 52
Query: 118 TDKGVSAVGQVVSGRFCIDPPGLVER--LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
TD GV A GQV GL + LN+ LP +IRI + A F+A+K ++ Y
Sbjct: 53 TDAGVHAHGQVAHCDVPDAKAGLRWQRSLNALLPPEIRILAAEPAAADFHARKDALRKTY 112
Query: 176 VY 177
VY
Sbjct: 113 VY 114
>gi|348176394|ref|ZP_08883288.1| tRNA pseudouridine synthase A [Saccharopolyspora spinosa NRRL
18395]
Length = 278
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 23/128 (17%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
+Y G + G K PG +T++G +E+AL A R PR + RTD GV A G
Sbjct: 6 SYDGTDFCGWAKQPGQRTVQGLVEDAL----AKQPPGRSVPRPV--VVAGRTDSGVHASG 59
Query: 127 QVV-----------SGRFCIDPPG------LVERLNSNLPTQIRIFGYKRVTASFNAKKF 169
QV+ GR +D G +V R N LP +R+ G + V ++F+A+
Sbjct: 60 QVMHFDVVPHDPVGGGRISVDAQGIPDLGRMVHRWNRILPPDLRVLGARVVPSAFDARFS 119
Query: 170 CDQRRYVY 177
+R Y Y
Sbjct: 120 ALRRHYRY 127
>gi|159469598|ref|XP_001692950.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii]
gi|158277752|gb|EDP03519.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii]
Length = 239
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
+ AY G Y G Q P A T++ LE AL G V DRG + RTD GV
Sbjct: 7 LILAYDGTDYCGWQLQPAAPTVQAKLEAAL---GTVLREDRGV---LGVRAAGRTDSGVH 60
Query: 124 AVGQV---VSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFN 165
A GQV ++GR + L +LN+ LP IR+ G +R F+
Sbjct: 61 ARGQVRTGLTGRGGLPVDKLAYKLNAVLPPDIRVMGVRRTAPDFS 105
>gi|213693060|ref|YP_002323646.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|213524521|gb|ACJ53268.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 305
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I AY G G+ G K P +T++G +E+AL V D P R A RTD
Sbjct: 5 RLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPADDAAEPLRLTVA--GRTDT 62
Query: 121 GVSAVGQVVS------------GRFCID-PPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
GV A QV G I L RL + LP+ I I G A F+A+
Sbjct: 63 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPAGFDAR 122
Query: 168 KFCDQRRYVY 177
+R YVY
Sbjct: 123 FSALERTYVY 132
>gi|326332230|ref|ZP_08198510.1| tRNA pseudouridine synthase A [Nocardioidaceae bacterium Broad-1]
gi|325949936|gb|EGD41996.1| tRNA pseudouridine synthase A [Nocardioidaceae bacterium Broad-1]
Length = 287
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA-RTD 119
+I I AY G + G PG +T++G+L+ AL + V R W A RTD
Sbjct: 2 RIRIDLAYDGTMFHGWATQPGLRTVQGELQAALATALRVPST---GERSQVWVTVAGRTD 58
Query: 120 KGVSAVGQVVSGRFCIDPP---------------GLVERLNSNLPTQIRIFGYKRVTASF 164
GV A GQV F ID LV RLN LP +R+ F
Sbjct: 59 SGVHARGQV--AHFDIDADVLESSRGRSEQSPLDSLVRRLNGILPADLRVHRAVEAPEGF 116
Query: 165 NAKKFCDQRRYVY 177
NA+ RRYVY
Sbjct: 117 NARFSALSRRYVY 129
>gi|430743910|ref|YP_007203039.1| pseudouridylate synthase I [Singulisphaera acidiphila DSM 18658]
gi|430015630|gb|AGA27344.1| pseudouridylate synthase I [Singulisphaera acidiphila DSM 18658]
Length = 255
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 29/213 (13%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFH-SGAVSERDRGNPRRYDWARSART 118
R I + +Y G + G Q+ P +T++ LEEA+ +GA + + S RT
Sbjct: 2 RNIKLLLSYDGTDFSGWQRQPDRRTVQQTLEEAIQRLTGAAAVTNA----------SGRT 51
Query: 119 DKGVSAVGQVVSGRFCID---PPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
D GV A+GQVV + + P V+ LN+ LP IR+ + +F++ +RY
Sbjct: 52 DAGVHAIGQVVHF-YTVSRHAPEVFVKALNATLPHDIRVRNAWDMPQAFHSTLDTKSKRY 110
Query: 176 VYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSND 235
Y+ +D+ D S N + + L+ + R + G+ + +
Sbjct: 111 RYV-----IDNGRIADPFQTRYS----NHVYQPLDVAAMHRAAQALKGRHDFH-----SF 156
Query: 236 ENASLNSQVKVDTVVSTCNGDRHNTNLESVESN 268
E N V T+V RH+T VE++
Sbjct: 157 ETQWPNRTSSVRTIVDIAVTRRHDTVWVEVEAD 189
>gi|351703596|gb|EHB06515.1| tRNA pseudouridine synthase 3 [Heterocephalus glaber]
Length = 448
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 65/154 (42%), Gaps = 35/154 (22%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+R +A+ AY G YQG Q+N TIE L AL + V R N + R
Sbjct: 30 QRHVALRIAYLGWAYQGFASQENTD-NTIEEKLFVALTKTRLVESRQTSN-----YHRCG 83
Query: 117 RTDKGVSAVGQVVS----GRFCIDPPG--------------------LVERLNSNLPTQI 152
RTDKGVSA GQV+S +F P G L+ LP I
Sbjct: 84 RTDKGVSAFGQVISLDLRSQF---PRGKDSKDLNLKDEVSDDAKEARYTHILSRVLPPDI 140
Query: 153 RIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDS 186
R+ + V SF+A+ C + Y Y P L+S
Sbjct: 141 RVLAWAPVECSFSARFSCLEHTYHYFFPCADLNS 174
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 13/129 (10%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAEDP-SARRYIISFGADSVVNVEG-------IDFLKC 396
R N + YVG+H F N A + +R I+S V G +
Sbjct: 176 RMNYAAQKYVGTHVFRNLCKMDVANGVINFQRTILSAQVQLVGQSLGEERWQEPFQLCQL 235
Query: 397 EVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDEC 453
EV GQ+F+ HQ+R M+ + + + +I+ L+ + N P A E L L +C
Sbjct: 236 EVTGQAFLYHQVRCMMAILFLIGQGMEKPEVIDELLKIEKNPQKPQYSMAVEFPLVLYDC 295
Query: 454 IFASYNKKW 462
F N KW
Sbjct: 296 KFE--NIKW 302
>gi|255710543|ref|XP_002551555.1| KLTH0A02222p [Lachancea thermotolerans]
gi|238932932|emb|CAR21113.1| KLTH0A02222p [Lachancea thermotolerans CBS 6340]
Length = 443
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 65/148 (43%), Gaps = 29/148 (19%)
Query: 60 RKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
R +A FAY G Y G+ QK P T+EG + EA+ V P+ Y+++R
Sbjct: 87 RFVAFKFAYLGWNYNGLAIQKEPTPLPTVEGTILEAMNACKLVPSM---VPQDYNFSRCG 143
Query: 117 RTDKGVSAVGQVVS------------------GRFCIDPPGLVERLNSNLPTQIRIFGY- 157
RTDKGVSA+ QV+S GR + LN LP IRI
Sbjct: 144 RTDKGVSAMNQVISLHVRSNLTREEQQDEENDGR----EIDYIHILNQLLPDDIRISAVC 199
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFALD 185
R +F+A+ C R Y YL LD
Sbjct: 200 LRPPTNFDARFSCQYRHYRYLFHKDGLD 227
>gi|336179752|ref|YP_004585127.1| tRNA pseudouridine synthase A [Frankia symbiont of Datisca
glomerata]
gi|334860732|gb|AEH11206.1| tRNA pseudouridine synthase A [Frankia symbiont of Datisca
glomerata]
Length = 279
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G + G + PG +T++GD+E+AL + + RTD GV A G
Sbjct: 15 AYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPA--------VRLTVAGRTDAGVHARG 66
Query: 127 QVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
QV D P GL RLN L +RI F+A+ RRYVY
Sbjct: 67 QVAHVDIPDDVPLGGLARRLNGVLDRAVRITALAPAPPGFDARFSALSRRYVY 119
>gi|384200286|ref|YP_005586029.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|320459238|dbj|BAJ69859.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
Length = 303
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I AY G G+ G K P +T++G +E+AL V D P R A RTD
Sbjct: 3 RLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPADDAAEPLRLTVA--GRTDT 60
Query: 121 GVSAVGQVVS------------GRFCID-PPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
GV A QV G I L RL + LP+ I I G A F+A+
Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPAGFDAR 120
Query: 168 KFCDQRRYVY 177
+R YVY
Sbjct: 121 FSALERTYVY 130
>gi|339449279|ref|ZP_08652835.1| tRNA pseudouridine synthase A [Lactobacillus fructivorans KCTC
3543]
Length = 268
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+ I FAY G + G QK P +T+EG L V++ + + R+ S RTD
Sbjct: 4 RYKITFAYDGTKFAGFQKQPKQRTVEGTLTH------IVNKMAQKSGRQIAIYGSGRTDA 57
Query: 121 GVSAVGQVVSGRFC--IDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A+GQV F + +++ LNS P I I +RV F+A+ ++Y+Y
Sbjct: 58 GVHALGQVAHFDFPYELSEESMLKGLNSMCPLDIEILKVQRVNDDFHARYDVTGKKYLYR 117
Query: 179 L 179
L
Sbjct: 118 L 118
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 346 FNRI---LKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQS 402
F RI ++ YVG+H+F +F + A+D S R + S A+ + I + E G
Sbjct: 141 FGRIKLAIQDYVGTHDFSSFVA-SGAKDGSRVRTVFSVKANWNKDANEI---QLEFYGDG 196
Query: 403 FMLHQIRKMIGLAVAVVRNCAPQSLIETALQ-KDVNINVPTAPEVGLYLDECIF 455
FM +QIR M+G+ + + + P I+ ++ +D N T P GLYL +
Sbjct: 197 FMYNQIRIMVGVLMEIGQGKRPIHDIKRLIKVRDRNEARLTMPANGLYLKRVFY 250
>gi|303328364|ref|ZP_07358802.1| tRNA pseudouridine synthase A [Desulfovibrio sp. 3_1_syn3]
gi|302861694|gb|EFL84630.1| tRNA pseudouridine synthase A [Desulfovibrio sp. 3_1_syn3]
Length = 226
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 61 KIAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
++ + AY G GY G Q K TI+G+LE AL R G S R
Sbjct: 2 RLKLLLAYLGTGYSGWQIQEKPSPPPTIQGELEAALRVLAGAPVRVHG---------SGR 52
Query: 118 TDKGVSAVGQVVSGRFCIDPPGLVER--LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
TD GV A GQV GL + LN+ LP +IRI + A F+A+K ++ Y
Sbjct: 53 TDAGVHAHGQVAHCDVPDAKAGLRWQRSLNALLPPEIRILAAEPAAADFHARKDALRKTY 112
Query: 176 VY 177
VY
Sbjct: 113 VY 114
>gi|330804770|ref|XP_003290364.1| hypothetical protein DICPUDRAFT_154861 [Dictyostelium purpureum]
gi|325079531|gb|EGC33127.1| hypothetical protein DICPUDRAFT_154861 [Dictyostelium purpureum]
Length = 449
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 49/173 (28%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
C RR +A +Y G Y G ++ +TIEG L +AL + +S+ N +A+S
Sbjct: 65 CHRRYVAFKVSYVGWPYHGFAAQDCTDETIEGHLIKALKRTSLISDIKTSN-----YAKS 119
Query: 116 ARTDKGVSAVGQVVS---------GRFCIDPPG--------------------------- 139
RTDKGVSA GQV+S G I P
Sbjct: 120 GRTDKGVSAFGQVISLYVRSNLTEGEGIIAPLDQSGGPISNRPSKNNNNNSNSNNQKQQN 179
Query: 140 -------LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
V+ LN LP +IR+ G+ + FN++ R Y Y + +D
Sbjct: 180 KAKEEFPYVKMLNGVLPPEIRVLGWAPIPFHFNSRFSTLFRTYKYFFTLNNMD 232
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 352 HYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKM 411
HY+G H+F NF S +R I+ F + V N D + G +F+ HQIR M
Sbjct: 242 HYLGEHDFSNFCKMDIENVKSFKRVILEFSIEPVNNHN--DLYVATIKGYAFLWHQIRCM 299
Query: 412 IGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDEC 453
+ + + + P S+I L I P A E+ L L +C
Sbjct: 300 MAMLFLIGQKKFPVSIIPELLDTSNGITKPPYEMASEIPLVLFDC 344
>gi|110667083|ref|YP_656894.1| tRNA pseudouridine synthase A [Haloquadratum walsbyi DSM 16790]
Length = 276
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G + G Q+ P T+E L +AL S V RD + + +A + RTD GV
Sbjct: 7 AFRLAYDGRPFSGFQRQPSVPTVEDALFDAL-DSLDVFNRDT-DSKPSGYAAAGRTDAGV 64
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
SA+ Q V G C P R LNS LPT +R + V + F+A QR Y Y L
Sbjct: 65 SALRQTV-GFEC--PSWCTPRALNSELPTSVRAWASADVQSGFHATHDALQRTYTYYL 119
>gi|366089434|ref|ZP_09455907.1| tRNA pseudouridine synthase A [Lactobacillus acidipiscis KCTC
13900]
Length = 290
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 56 LCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+ R KI I AY G + G Q P +T++ LE+AL +S+ D S
Sbjct: 1 MTSRYKITI--AYDGTRFAGFQSQPKQRTVQSVLEQAL---NKMSKFD----EYITIFGS 51
Query: 116 ARTDKGVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQR 173
RTD GV A+GQV F D P ++ LNS LP I I + V +F+A+ +
Sbjct: 52 GRTDSGVHALGQVAHFDFPHDMPADAMLRGLNSMLPLDIEIVDCQIVPQTFHARYEAHAK 111
Query: 174 RYVY 177
RY+Y
Sbjct: 112 RYMY 115
>gi|116624080|ref|YP_826236.1| tRNA pseudouridine synthase A [Candidatus Solibacter usitatus
Ellin6076]
gi|122253167|sp|Q01WL4.1|TRUA_SOLUE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|116227242|gb|ABJ85951.1| tRNA pseudouridine synthase A [Candidatus Solibacter usitatus
Ellin6076]
Length = 240
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R+I I+ AY G + G Q PG TI+G LEE + G + G P A S RTD
Sbjct: 2 RRIRIYLAYDGGPFHGWQVQPGLATIQGILEEIV---GGME----GKPVHV--AGSGRTD 52
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERL----NSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
GV A+ QV + F I+ P VE L N LP IRI + V A F+ + + Y
Sbjct: 53 AGVHALAQVAA--FSIENPIPVENLRRAVNRLLPPAIRILCAEEVQADFHPRFDAVAKTY 110
Query: 176 VY 177
Y
Sbjct: 111 EY 112
>gi|403212791|emb|CAJ51238.2| tRNA pseudouridine synthase TruA [Haloquadratum walsbyi DSM 16790]
Length = 272
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G + G Q+ P T+E L +AL S V RD + + +A + RTD GV
Sbjct: 3 AFRLAYDGRPFSGFQRQPSVPTVEDALFDAL-DSLDVFNRDT-DSKPSGYAAAGRTDAGV 60
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
SA+ Q V G C P R LNS LPT +R + V + F+A QR Y Y L
Sbjct: 61 SALRQTV-GFEC--PSWCTPRALNSELPTSVRAWASADVQSGFHATHDALQRTYTYYL 115
>gi|52548278|gb|AAU82127.1| pseudouridylate synthase [uncultured archaeon GZfos10C7]
Length = 284
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 12/149 (8%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNP--GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
++ +IA+ Y G Y G Q P TIEG+L +AL G + +R N ++ +
Sbjct: 6 QKERIALKIGYIGTNYHGFQIQPRSALPTIEGELFKALKKQGIIEDRKTAN-----YSAA 60
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVERL-NSNLPT-QIRIFGYKRVTASFNAKKFCDQR 173
RTD GV A+ QVVS F R+ NS LP I + + + FNA++ R
Sbjct: 61 GRTDTGVHALAQVVS--FVTSNQNTTPRMINSVLPDGSIWVSAIAKPYSGFNARRDAISR 118
Query: 174 RY-VYLLPVFALDSSSHRDRESVMASLGS 201
Y YL LD R RE+ +G+
Sbjct: 119 EYRYYLFLQTELDLDITRMREASELFVGT 147
>gi|30248700|ref|NP_840770.1| tRNA pseudouridine synthase A [Nitrosomonas europaea ATCC 19718]
gi|42559793|sp|Q820P8.1|TRUA_NITEU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|30180295|emb|CAD84602.1| tRNA pseudouridine synthase [Nitrosomonas europaea ATCC 19718]
Length = 272
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
KI + Y G GY G QK PG +++ LE AL SG R+ + RTD
Sbjct: 13 KIVLALEYDGRGYCGWQKQPGCLSVQSRLESAL--SGVAG-------RQIQVVAAGRTDA 63
Query: 121 GVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A+ QVV C+ P + N+ LP I I V+ F+A+ +R Y+Y
Sbjct: 64 GVHALCQVVHLETCVRRPLNAWIRGTNALLPGDISILEASEVSDDFHARFSATERTYLYY 123
Query: 179 L 179
L
Sbjct: 124 L 124
>gi|290562699|gb|ADD38745.1| tRNA pseudouridine synthase 3 [Lepeophtheirus salmonis]
Length = 420
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 38/162 (23%)
Query: 56 LCKRRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
L K+RK+ Y G Y G + TIE L +AL + + R+ N + R
Sbjct: 54 LYKKRKVLFQITYFGWNYHGFTTQEDSCMTIEAHLFKALLTTCLIQSRETSN-----YHR 108
Query: 115 SARTDKGVSAVGQVVS---------GRFCIDPP--------------GLVERLNSNLPTQ 151
RTDKGVSA QV+S G D P ++ +NSNLP
Sbjct: 109 CGRTDKGVSAFRQVISIDVRTNLKEGIGVFDYPDCKADSRPDMPHEIDYIKIINSNLPPD 168
Query: 152 IRIFGY-----KRVTASFNAKKFCDQRRYVYLLPVFALDSSS 188
I++ + + ++A F+ C +R Y Y P+ ++ S S
Sbjct: 169 IQLIAWTPAQNRELSARFD----CKKRTYKYFFPLGSIKSLS 206
>gi|296268583|ref|YP_003651215.1| tRNA pseudouridine synthase A [Thermobispora bispora DSM 43833]
gi|296091370|gb|ADG87322.1| tRNA pseudouridine synthase A [Thermobispora bispora DSM 43833]
Length = 294
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 56/135 (41%), Gaps = 30/135 (22%)
Query: 66 FAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125
Y G +QG + PG +T++G+LE AL A R PR + RTD GV A
Sbjct: 12 LGYDGTDFQGWARQPGLRTVQGELEAAL----ATLLRLEAPPR---LTVAGRTDAGVHAR 64
Query: 126 GQVVS--------------GRFCIDPP---------GLVERLNSNLPTQIRIFGYKRVTA 162
GQVV GR PP LV RL + LP +R+F
Sbjct: 65 GQVVHVDLPLAALAILEPRGRETATPPAERLPELCSALVRRLAAVLPPDVRVFAVSVPPD 124
Query: 163 SFNAKKFCDQRRYVY 177
F+A+ RRY Y
Sbjct: 125 GFDARFSALCRRYCY 139
>gi|50309181|ref|XP_454596.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643731|emb|CAG99683.1| KLLA0E14345p [Kluyveromyces lactis]
Length = 444
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 62/144 (43%), Gaps = 21/144 (14%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAK---TIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
R +A FAY G Y G+ A T+EG + E + V P+ Y ++R
Sbjct: 96 RFVAFKFAYLGWNYNGLAIQKDATPLPTVEGTILETMNKCKLVPSM---VPQEYKFSRCG 152
Query: 117 RTDKGVSAVGQVVSGRF--------CIDPP------GLVERLNSNLPTQIRIFGY-KRVT 161
RTD+GVSA+ QV+S R +DP V LN LP IR+ R
Sbjct: 153 RTDRGVSAMNQVISLRVRSNLTAEEQLDPSYDDKEIQYVNILNQILPEDIRVSAVCLRPP 212
Query: 162 ASFNAKKFCDQRRYVYLLPVFALD 185
F+A+ C R Y YL LD
Sbjct: 213 KGFDARFSCKSRHYKYLFSSEGLD 236
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 344 KRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
+R KHY G H+F NF ++ + Y + + ++++V D ++VG +F
Sbjct: 238 ERMQLAAKHYEGEHDFRNFCKLDGSKQIT--NYKRTIKSSNIMHVSE-DMYCFDLVGSAF 294
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPT---APEVGLYLDECIFA 456
+ HQ+R M+ V + +LI+ L + P A ++ L L EC F+
Sbjct: 295 LWHQVRCMVANLFLVGQGLEDPNLIKEMLDIEKMPRKPIYEMASDIPLILYECEFS 350
>gi|289581033|ref|YP_003479499.1| pseudouridine synthase I TruA [Natrialba magadii ATCC 43099]
gi|289530586|gb|ADD04937.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Natrialba magadii ATCC 43099]
Length = 293
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G GY G Q+ P T+E + +AL + V D P Y A + RTD GV
Sbjct: 3 AFRLAYDGTGYYGFQRQPDVPTVEDAMFDAL-RALDVLAPDADKPAGY--AAAGRTDAGV 59
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
SA+ Q V+ P L R N LP IR + F+A +R Y Y L
Sbjct: 60 SALAQTVAFEA---PDWLTPRAFNGELPADIRAWAAADAPDEFHATHHAREREYTYYL 114
>gi|260942163|ref|XP_002615380.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720]
gi|238850670|gb|EEQ40134.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720]
Length = 447
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 85/207 (41%), Gaps = 44/207 (21%)
Query: 2 ENAETNTEKLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQL----C 57
ENA + + P + P +EP PK P A KR+
Sbjct: 39 ENAPKDED--PQAAKEPSKEPQPK---------------TKPGKTAAAGQKKRKFDFSKH 81
Query: 58 KRRKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
R +A FAY G Y G+ Q P T+E ++ +A+ + V E D P +++R
Sbjct: 82 NTRFVAFRFAYMGWNYNGLNFQNEPTPLPTVEEEILQAMTKAKLVPEAD---PASCNFSR 138
Query: 115 SARTDKGVSAVGQVVS---------------GRFCIDPPGLVERLNSNLPTQIRIFGY-K 158
RTDKGVSA+ QV+S + + P L LN+ LP IRI
Sbjct: 139 CGRTDKGVSALNQVISLDVRSALSKEEHADKEKDVKELPYLT-ILNALLPPDIRITAVCL 197
Query: 159 RVTASFNAKKFCDQRRYVYLLPVFALD 185
R +FNA+ C R Y YL LD
Sbjct: 198 RPPPNFNARFSCKYRHYKYLFKKTDLD 224
>gi|448357622|ref|ZP_21546319.1| tRNA pseudouridine synthase A [Natrialba chahannaoensis JCM 10990]
gi|445648515|gb|ELZ01469.1| tRNA pseudouridine synthase A [Natrialba chahannaoensis JCM 10990]
Length = 293
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G GY G Q+ P T+E + +AL + V D P Y A + RTD GV
Sbjct: 3 AFRLAYDGTGYYGFQRQPDVSTVEDAMFDAL-RALDVLAPDADKPAGY--AAAGRTDAGV 59
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
SA+ Q V+ P L R N LP IR + F+A +R Y Y L
Sbjct: 60 SALAQTVAFEA---PDWLTPRAFNGQLPADIRAWAAADAPDEFHATHHARKREYTYYL 114
>gi|242040775|ref|XP_002467782.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor]
gi|241921636|gb|EER94780.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor]
Length = 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 18/137 (13%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAK-TIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
C +R +A+ Y G + G + T+E ++ +AL + + G+ + ++R
Sbjct: 119 CPKRLVALKVMYFGQRFYGFSSEGNTEPTVESEIFKALERAKLMV----GSRKESCYSRC 174
Query: 116 ARTDKGVSAVGQVVSG--RFCIDPPG-----------LVERLNSNLPTQIRIFGYKRVTA 162
RTDKGVSA GQV+S R I G V+ LN LP IR+ G+ V A
Sbjct: 175 GRTDKGVSATGQVISLYLRSNIKDVGGDMLDERSEIDYVKVLNRILPRDIRVLGWCPVPA 234
Query: 163 SFNAKKFCDQRRYVYLL 179
F+A+ C R Y YL
Sbjct: 235 DFHARFTCLSREYKYLF 251
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLK 395
F G+ + + ++G H+F NF A + RR I F + D L
Sbjct: 251 FWKGDLDILEMQKAASKFIGEHDFRNFCKMDAANVSNYRRRITEFTISACDRRSNNDEL- 309
Query: 396 CEVV--GQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYL 450
C ++ G +F+ HQ+R M+ + + + S++++ L P APE+ L L
Sbjct: 310 CSMMIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDITKTPRKPQYKMAPELPLIL 369
Query: 451 DECIFASYN 459
C+F N
Sbjct: 370 RSCLFDKAN 378
>gi|348590140|ref|YP_004874602.1| tRNA pseudouridine synthase A [Taylorella asinigenitalis MCE3]
gi|347974044|gb|AEP36579.1| tRNA pseudouridine synthase A [Taylorella asinigenitalis MCE3]
Length = 268
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++A+ +Y G YQG Q P TI+ LE ALF + + + + RTD
Sbjct: 4 RVALGISYDGRDYQGWQTQPNGLTIQDFLEAALF---------KFTNHKVNTICAGRTDT 54
Query: 121 GVSAVGQVVS--GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A+GQVV + V +N++LP IR+ + V F+A+ R YVYL
Sbjct: 55 GVHAIGQVVHFDTEVSRELESWVRGVNAHLPDSIRVRWAQEVPDEFSARFSATHRTYVYL 114
Query: 179 L 179
L
Sbjct: 115 L 115
>gi|358459805|ref|ZP_09169999.1| tRNA pseudouridine synthase A [Frankia sp. CN3]
gi|357076994|gb|EHI86459.1| tRNA pseudouridine synthase A [Frankia sp. CN3]
Length = 278
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I AY G + G + PG +T++G++E+AL + + RTD
Sbjct: 11 RLRIDIAYDGTPFAGWARQPGQRTVQGEVEDALMRVARLPA--------VRLTVAGRTDA 62
Query: 121 GVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A GQV + P GL RLN L +R+ G F+A+ RRY Y
Sbjct: 63 GVHAAGQVAHVDIPAEVPLGGLARRLNGVLDRAVRVTGLAPAPPGFDARFSALSRRYAY 121
>gi|374603290|ref|ZP_09676272.1| tRNA pseudouridine synthase A [Paenibacillus dendritiformis C454]
gi|374391159|gb|EHQ62499.1| tRNA pseudouridine synthase A [Paenibacillus dendritiformis C454]
Length = 273
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 25/127 (19%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALF-----HSGAVSERDRGNPRRYDWAR 114
R I + +Y G Y G Q PG TI+G +EEA+ H+ +
Sbjct: 2 RNIGMLLSYDGTAYSGYQTQPGRDTIQGRIEEAIHMLTKEHAAVTA-------------- 47
Query: 115 SARTDKGVSAVGQVVSGRFCIDPPGLVER----LNSNLPTQIRIFGYKRVTASFNAKKFC 170
S RTD GV A+GQVV+ F + +ER +NS LP I I SF+A+
Sbjct: 48 SGRTDAGVHALGQVVN--FATESSIPIERWCPAMNSRLPDDIVIRDAWEAPESFHARFSA 105
Query: 171 DQRRYVY 177
++ Y Y
Sbjct: 106 KRKTYRY 112
>gi|57640862|ref|YP_183340.1| tRNA pseudouridine synthase A [Thermococcus kodakarensis KOD1]
gi|62901178|sp|Q5JI92.1|TRUA_PYRKO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|57159186|dbj|BAD85116.1| tRNA pseudouridine synthase A [Thermococcus kodakarensis KOD1]
Length = 267
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 24/180 (13%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
K+A+ AY G + G Q+ PG +T+EG++ + L G + +P + D+ ++RTD+
Sbjct: 2 KLALRVAYDGSAFYGFQRQPGVRTVEGEIIKVLQKLGIIE-----SPEKNDFKGASRTDR 56
Query: 121 GVSAVGQVVSGRFCI-DPPGLV--ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GVSA VVS F + P L E LN +L + + + G V F+ + + + Y Y
Sbjct: 57 GVSAFFNVVS--FVPSERPDLARPEVLNHHL-SDVWVLGIAEVPDDFHPRFWAKFKTYRY 113
Query: 178 LLPVFALDSSSHRDRESV---------MASLGSGNELVKCLECSE----RGRKVIGVMGK 224
L D S+ R+ S+ A L G + ++ +E E +G VI V GK
Sbjct: 114 YLVNEGFDLSAMRECASLFVGRHDFSAFAKLEPGRDPIREVERVEVIERQGYLVIEVQGK 173
>gi|217967401|ref|YP_002352907.1| tRNA pseudouridine synthase A [Dictyoglomus turgidum DSM 6724]
gi|226708649|sp|B8E1G5.1|TRUA_DICTD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|217336500|gb|ACK42293.1| tRNA pseudouridine synthase A [Dictyoglomus turgidum DSM 6724]
Length = 245
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 17/119 (14%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
+Y G + G QK PG +TI+G+LE+ L S E R + RTD GV A+G
Sbjct: 9 SYIGKDFYGFQKQPGKRTIQGELEKVL--SFLFDEEIRV-------IGAGRTDTGVHALG 59
Query: 127 QVVSGR------FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
QVV+ + F D L + LN LP I+I + V SF+A+ +R Y+Y++
Sbjct: 60 QVVNFKSRGHKGFSCDK--LHKVLNRLLPEDIKIKKVEIVDDSFHARYSAKRRWYIYVV 116
>gi|448466547|ref|ZP_21599133.1| tRNA pseudouridine synthase A [Halorubrum kocurii JCM 14978]
gi|445813808|gb|EMA63782.1| tRNA pseudouridine synthase A [Halorubrum kocurii JCM 14978]
Length = 292
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRY----DWARSART 118
A AY G Y G Q+ P A T+EG L L G + DRG+ + +A + RT
Sbjct: 11 AFRVAYDGREYAGFQRQPHATTVEGTLLRGLAEHGIL---DRGDGPTHATPPGYAAAGRT 67
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
D GVSAV Q V+ F P L R N +LP +R++ V +A +R Y Y
Sbjct: 68 DAGVSAVAQTVA--FAA-PDWLTPRAFNGHLPGSVRVWAAADVPEGLHATHDATRRTYRY 124
Query: 178 LL 179
L
Sbjct: 125 HL 126
>gi|308807767|ref|XP_003081194.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri]
gi|116059656|emb|CAL55363.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri]
Length = 813
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 63/134 (47%), Gaps = 19/134 (14%)
Query: 60 RKIAIFFAYCGVGYQGM-QKNPGAKT--IEGDLEEALFHSGAVSER-DRGNPRRYDWARS 115
R IA+ AY G Y+G + P A T +E L EAL + V+ D Y AR
Sbjct: 454 RAIALKVAYLGWPYRGFASQGPEATTPTVEWTLFEALAKTRLVAAAADVFKTASY--ARC 511
Query: 116 ARTDKGVSAVGQVVS----------GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFN 165
RTD+GVS +GQ+V+ R +D GL LN LP+ +R G+ V N
Sbjct: 512 GRTDRGVSGLGQIVTLQVRSNGASDPREELDYVGL---LNRALPSDVRALGWAPVDEELN 568
Query: 166 AKKFCDQRRYVYLL 179
A+ C R+Y Y
Sbjct: 569 ARFDCKWRQYKYFF 582
>gi|269837096|ref|YP_003319324.1| tRNA pseudouridine synthase A [Sphaerobacter thermophilus DSM
20745]
gi|269786359|gb|ACZ38502.1| tRNA pseudouridine synthase A [Sphaerobacter thermophilus DSM
20745]
Length = 271
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R + Y G + G Q+ PG +T++G LE A +ER G P R A + RTD
Sbjct: 8 RTFRVDLGYDGSAFFGSQRQPGVRTVQGALESA-------AERLAGEPTRV--ALAGRTD 58
Query: 120 KGVSAVGQVVSG--RFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
+GV AVGQV S R+ L L + P + ++G + V F+A+ R Y Y
Sbjct: 59 RGVHAVGQVASLRIRWARSADELARALMALTPDDLVVYGAREVDERFHARFSARWREYRY 118
Query: 178 LL 179
+
Sbjct: 119 FV 120
>gi|332159317|ref|YP_004424596.1| tRNA pseudouridine synthase A [Pyrococcus sp. NA2]
gi|331034780|gb|AEC52592.1| tRNA pseudouridine synthase A [Pyrococcus sp. NA2]
Length = 263
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 18/129 (13%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++A+ AY G + G Q+ P +T+EG++ +AL +SG D+ ++RTDK
Sbjct: 2 RVALKIAYDGTKFHGFQRQPNIRTVEGEIIKALNNSGI---------EYSDFKSASRTDK 52
Query: 121 GVSAVGQVVS----GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
GVSA+G VV+ ++P L RL + I V F+ + + + Y
Sbjct: 53 GVSALGNVVAITTEDEKALNPMVLNARLED-----VWILSAIEVPPDFHPRFWAKSKVYR 107
Query: 177 YLLPVFALD 185
Y LP LD
Sbjct: 108 YYLPSIGLD 116
>gi|448328805|ref|ZP_21518111.1| tRNA pseudouridine synthase A [Natrinema versiforme JCM 10478]
gi|445615109|gb|ELY68768.1| tRNA pseudouridine synthase A [Natrinema versiforme JCM 10478]
Length = 285
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G Y G Q+ P T+E + ++L + V E D P Y A + RTD GV
Sbjct: 5 AFRIAYDGRDYHGFQRQPDVSTVEDAIFDSL-RALDVLEEDADKPAGY--AAAGRTDAGV 61
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
SA+ Q ++ P L R LN+ LP IR + F+A +R+Y Y L
Sbjct: 62 SALAQTIA---LEAPDWLAPRALNAELPADIRAWAAAEAPDGFHATHHASRRKYTYHL 116
>gi|297582482|ref|YP_003698262.1| tRNA pseudouridine synthase A [Bacillus selenitireducens MLS10]
gi|297140939|gb|ADH97696.1| tRNA pseudouridine synthase A [Bacillus selenitireducens MLS10]
Length = 261
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 57/114 (50%), Gaps = 18/114 (15%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R++ I Y G G+ G QK P A+T++G+LE AL +V + P S RTD
Sbjct: 2 RRMLIRIEYDGSGFNGYQKQPNARTVQGELERAL----SVMHKAESWP----CTSSGRTD 53
Query: 120 KGVSAVGQVVSGRFCIDPPGLV--ER----LNSNLPTQIRIFGYKRVTASFNAK 167
GV V Q V D P + ER LNS LP I++ G V ASF+A+
Sbjct: 54 TGVHGVRQPVH----FDSPLTIPDERWPMALNSLLPDDIQVLGAMEVDASFHAR 103
>gi|429192213|ref|YP_007177891.1| pseudouridylate synthase [Natronobacterium gregoryi SP2]
gi|448325611|ref|ZP_21514997.1| tRNA pseudouridine synthase A [Natronobacterium gregoryi SP2]
gi|429136431|gb|AFZ73442.1| pseudouridylate synthase [Natronobacterium gregoryi SP2]
gi|445614976|gb|ELY68639.1| tRNA pseudouridine synthase A [Natronobacterium gregoryi SP2]
Length = 303
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G Y G Q+ P T+E + EAL S V D P Y A + RTD+GV
Sbjct: 18 AFRIAYDGTDYYGYQRQPSVPTVEDAIFEAL-RSLEVLAPDAEKPTGY--AAAGRTDRGV 74
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPV 181
SA+ Q + P L R N+ LP +R + F+A +R Y Y L
Sbjct: 75 SALAQTIG---LETPDWLTPRAFNAALPADVRAWASADAPEGFHATHHATRREYTYQLYA 131
Query: 182 FALDSSSHRDRES 194
D + R ES
Sbjct: 132 PPADGGTSRSLES 144
>gi|372489802|ref|YP_005029367.1| pseudouridylate synthase I [Dechlorosoma suillum PS]
gi|359356355|gb|AEV27526.1| pseudouridylate synthase I [Dechlorosoma suillum PS]
Length = 275
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+IA+ Y G + G Q PG +T++ LE AL GA++ G P A RTD
Sbjct: 14 RIALGLEYDGNAFHGWQTQPGGRTVQDALEAAL---GAIA----GVPVATTCA--GRTDT 64
Query: 121 GVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A QVV + P V +NS+LP + + + V A F+A+ RRY YL
Sbjct: 65 GVHATSQVVHFDAPVSRPESAWVRGVNSHLPDGVAVRWAQAVPADFHARFSARGRRYRYL 124
Query: 179 L 179
L
Sbjct: 125 L 125
>gi|46446316|ref|YP_007681.1| tRNA-pseudouridine synthase I [Candidatus Protochlamydia
amoebophila UWE25]
gi|51316630|sp|Q6MDE3.1|TRUA2_PARUW RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|46399957|emb|CAF23406.1| putative tRNA-pseudouridine synthase I [Candidatus Protochlamydia
amoebophila UWE25]
Length = 262
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 23/141 (16%)
Query: 49 DSTTKRQLC---KRRKIAIFFAYCGVGYQGMQKNPGA----KTIEGDLEEALFHSGAVSE 101
D TT+ L + I + AY G Y G QK P KT++ LE+ L H+ ++
Sbjct: 2 DYTTQSDLSLSKSMQNIKLKIAYDGQAYFGWQKTPAGPSVEKTLQNSLEQILQHTISLQA 61
Query: 102 RDRGNPRRYDWARSARTDKGVSAVGQVV---SGRFCIDPPGLVERLNSNLPTQIRIFGYK 158
++RTDKGV A GQ+V + + D + LNS LPT +RI +
Sbjct: 62 -------------ASRTDKGVHARGQIVNFLTTKSITDLQKFILSLNSLLPTDLRILSAE 108
Query: 159 RVTASFNAKKFCDQRRYVYLL 179
++ ++F+ C + Y Y +
Sbjct: 109 KMPSTFHPTLNCVAKEYCYYI 129
>gi|347534752|ref|YP_004841422.1| tRNA pseudouridine synthase A [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504808|gb|AEN99490.1| tRNA pseudouridine synthase A [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 263
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNP-RRYDWARSART 118
R+ I FAY G + G QK P +T+EG L + + R NP + S RT
Sbjct: 2 RRYKITFAYDGTKFAGFQKQPKQRTVEGVLTKLV-------NRMAKNPTQEIGVYGSGRT 54
Query: 119 DKGVSAVGQVVSGRFCIDPPG--LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
D GV A+ QV F D P +++ LNS P I I K +F+A+ ++Y+
Sbjct: 55 DAGVHALAQVAHFDFPFDIPAENMLKGLNSMCPLDIEILKVKIAEPNFHARYDVTGKKYL 114
Query: 177 Y 177
Y
Sbjct: 115 Y 115
>gi|373499015|ref|ZP_09589510.1| tRNA pseudouridine synthase A [Fusobacterium sp. 12_1B]
gi|371959713|gb|EHO77390.1| tRNA pseudouridine synthase A [Fusobacterium sp. 12_1B]
Length = 242
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R I I + + G + G Q+ PG +T++G++E+ L + R++ N + RTD
Sbjct: 2 RNIKIRYRFDGSMFYGFQRQPGKRTVQGEIEKLL----DIVLREKVN-----MISAGRTD 52
Query: 120 KGVSAVGQVVSGRFCIDPPGLVER----LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
+GV A+ QV F P VE+ LN LP I IF + FN++ R Y
Sbjct: 53 RGVHALEQV--SNFLTSSPIPVEKLKHALNKGLPLDIEIFEVEDADIDFNSRFMAKDRAY 110
Query: 176 VYLL 179
Y++
Sbjct: 111 RYVI 114
>gi|399116028|emb|CCG18832.1| tRNA pseudouridine synthase A [Taylorella asinigenitalis 14/45]
Length = 268
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++A+ +Y G YQG Q P TI+ LE ALF + + + + RTD
Sbjct: 4 RVALGISYDGRDYQGWQTQPNGLTIQDFLEAALF---------KFTNNKVNTICAGRTDT 54
Query: 121 GVSAVGQVV--SGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A+GQVV + V +N++LP IR+ + V F+A+ R YVYL
Sbjct: 55 GVHAIGQVVHFDTEVTRELESWVRGVNAHLPDSIRVRWAQEVPDEFSARFSATHRTYVYL 114
Query: 179 L 179
L
Sbjct: 115 L 115
>gi|404368023|ref|ZP_10973382.1| tRNA pseudouridine synthase A [Fusobacterium ulcerans ATCC 49185]
gi|313690539|gb|EFS27374.1| tRNA pseudouridine synthase A [Fusobacterium ulcerans ATCC 49185]
Length = 242
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R I I + + G + G Q+ PG +T++G++E+ L + R++ N + RTD
Sbjct: 2 RNIKIRYRFDGSMFYGFQRQPGKRTVQGEIEKLL----DIVLREKVN-----MISAGRTD 52
Query: 120 KGVSAVGQVVSGRFCIDPPGLVER----LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
+GV A+ QV F P VE+ LN LP I IF + FN++ R Y
Sbjct: 53 RGVHALEQV--SNFLTSSPIPVEKLKHALNKGLPLDIEIFEVEDADIDFNSRFMAKDRAY 110
Query: 176 VYLL 179
Y++
Sbjct: 111 RYVI 114
>gi|256810921|ref|YP_003128290.1| tRNA pseudouridine synthase A [Methanocaldococcus fervens AG86]
gi|256794121|gb|ACV24790.1| tRNA pseudouridine synthase A [Methanocaldococcus fervens AG86]
Length = 259
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
K +G+H+FHN + R + ++ S R I E +L +++G+SF+ + +RK
Sbjct: 120 KKMIGTHSFHNLSKRDRTKEKSPIRTIYDIKIS-----ENEFYLTIDIIGESFLWNMVRK 174
Query: 411 MIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDEC------IFASYN-KKWK 463
++G + R P I+ L ++ VPT P GL L E I+ Y+ KK+K
Sbjct: 175 IVGALDLIGRGKKPVEWIDKLLDENYREGVPTFPPDGLILVEAKVDVDYIYDKYSIKKFK 234
Query: 464 DSHEE 468
+ EE
Sbjct: 235 EYWEE 239
>gi|372208847|ref|ZP_09496649.1| tRNA pseudouridine synthase A [Flavobacteriaceae bacterium S85]
Length = 264
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 20/164 (12%)
Query: 68 YCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSA--V 125
Y G + G QK P KT++G LE+ L R + + RTD VSA
Sbjct: 15 YLGFRFHGWQKQPKVKTVQGTLEKTL--------RFVFQHHHFKTLAAGRTDAMVSAQET 66
Query: 126 GQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185
++ + L+ +LN NLP IRI +V A+F+ + ++ Y YL
Sbjct: 67 HCHLTTKTAYATDWLLSQLNQNLPQDIRILDITKVDATFDILQQNKEKEYHYLF------ 120
Query: 186 SSSHRDR-ESVMASLGSGNELVKCLECSERGRKVI-GVMGKRTY 227
SH +R ASL +G V L + G K+ G+ + Y
Sbjct: 121 --SHGERNHPFCASLMTGKHQVLDLPLMQEGAKLFEGIHNFKKY 162
>gi|407278710|ref|ZP_11107180.1| tRNA pseudouridine synthase TruA [Rhodococcus sp. P14]
Length = 304
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 70/158 (44%), Gaps = 23/158 (14%)
Query: 43 PAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSER 102
P+AAG DST ++ + AY G + G + PG +T+ G++EE L GAV
Sbjct: 26 PSAAGEDST---------RLRLDIAYDGTDFSGWARQPGRRTVCGEIEEKL---GAVVR- 72
Query: 103 DRGNPRRYDWARSARTDKGVSAVGQVV-----SGRFCIDPPGLVERLNSNLPTQIRIFGY 157
P + A RTD GV A GQV + D LV RL LP +R+ G
Sbjct: 73 ---TPVQLTVA--GRTDAGVHASGQVAHVDVPTATLPDDLARLVRRLARFLPRDVRVTGI 127
Query: 158 KRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESV 195
F+A+ +R Y Y L + R R++V
Sbjct: 128 SVAPPHFDARFSAVRRHYEYRLTTAVYGAEPLRARDTV 165
>gi|261403437|ref|YP_003247661.1| tRNA pseudouridine synthase A [Methanocaldococcus vulcanius M7]
gi|261370430|gb|ACX73179.1| tRNA pseudouridine synthase A [Methanocaldococcus vulcanius M7]
Length = 259
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 338 YGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCE 397
Y E KR IL G+H+FHN + + + +D S R I E ++ +
Sbjct: 110 YDVEAIKRGASIL---TGTHSFHNLSKKDRTKDRSPIRTIFKIDVS-----ENEFYITLD 161
Query: 398 VVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDEC 453
+ G+SF+ + +RKM+G V R P + IE L++D VPT P GL L E
Sbjct: 162 IFGKSFLWNMVRKMVGALDLVGRGERPVNWIEKLLREDHKEGVPTFPPDGLILVEA 217
>gi|388514545|gb|AFK45334.1| unknown [Medicago truncatula]
Length = 400
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 11/132 (8%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSE------RDRGNPRRYDW 112
R I +Y G + G QK P T++ +E +L V E +D+G P +
Sbjct: 92 RFNFKILLSYHGGSFDGWQKQPNLNTVQSVVEVSL--GKFVDENKTQLLKDKGLPIQGCA 149
Query: 113 ARSARTDKGVSAVGQVVS---GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKF 169
A + RTDKGV+A+ QV S + I P + + +N P ++R+ V+ +F+
Sbjct: 150 AVAGRTDKGVTALQQVCSFYTWKKDIKPREIEDAINDAAPGKLRVVSVYEVSRAFHPNFS 209
Query: 170 CDQRRYVYLLPV 181
RRY+Y+ P+
Sbjct: 210 AKWRRYLYIFPL 221
>gi|386841908|ref|YP_006246966.1| tRNA pseudouridine synthase A [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374102209|gb|AEY91093.1| tRNA pseudouridine synthase A [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451795202|gb|AGF65251.1| tRNA pseudouridine synthase A [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 287
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 21/127 (16%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAK-TIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
++ + +Y G G+ G K G + T++G++E+AL R R Y+ + RTD
Sbjct: 11 RVRLDLSYDGTGFHGWAKQAGGRRTVQGEIEDAL----RTVTRSRET---YELTVAGRTD 63
Query: 120 KGVSAVGQVVSGRFCIDPP---------GLVERLNSNLPTQIRIFGYKRVTASFNAKKFC 170
GV A GQV +D P L++RL LP +R++ + + FNA+
Sbjct: 64 AGVHARGQVAH----VDLPEGVWREHHEKLLKRLAGRLPKDVRVWALREAPSGFNARFSA 119
Query: 171 DQRRYVY 177
RRY Y
Sbjct: 120 VWRRYAY 126
>gi|357520625|ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago truncatula]
gi|355524623|gb|AET05077.1| tRNA pseudouridine synthase A [Medicago truncatula]
Length = 400
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 11/132 (8%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSE------RDRGNPRRYDW 112
R I +Y G + G QK P T++ +E +L V E +D+G P +
Sbjct: 92 RFNFKILLSYHGGSFDGWQKQPNLNTVQSVVEVSL--GKFVDENKTQLLKDKGLPIQGCA 149
Query: 113 ARSARTDKGVSAVGQVVS---GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKF 169
A + RTDKGV+A+ QV S + I P + + +N P ++R+ V+ +F+
Sbjct: 150 AVAGRTDKGVTALQQVCSFYTWKKDIKPREIEDAINDAAPGKLRVVSVYEVSRAFHPNFS 209
Query: 170 CDQRRYVYLLPV 181
RRY+Y+ P+
Sbjct: 210 AKWRRYLYIFPL 221
>gi|410696408|gb|AFV75476.1| pseudouridylate synthase I [Thermus oshimai JL-2]
Length = 248
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 21/127 (16%)
Query: 60 RKIAIFFAYCGVGYQGMQKN-PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
R+I + Y G G+ G+Q+ G +T++G+LE+AL GA+ + + RT
Sbjct: 2 RRILLLVEYDGSGFAGLQRQRAGLRTVQGELEKALAAIGALPKA----------VAAGRT 51
Query: 119 DKGVSAVGQVVSGRFCIDPPGLV------ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQ 172
D GV A+ F D PG + E LN LP ++ + V +F+A++ +
Sbjct: 52 DAGVHALAMP----FHFDLPGRIPTEKIPEALNRLLPEDLKALSAREVPPTFHARRDAES 107
Query: 173 RRYVYLL 179
R Y+Y L
Sbjct: 108 RTYLYRL 114
>gi|168009447|ref|XP_001757417.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691540|gb|EDQ77902.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 299
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 14/106 (13%)
Query: 352 HYVGSHNFHNFTTRTKAEDPSAR---RYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQI 408
++VG+HNF F + D ++R R ++SF S+ G L EV G+SFM Q+
Sbjct: 168 YFVGTHNFSAFANHSA--DTASRDTLRDLLSFTVSSI----GPQLL-FEVEGKSFMYKQV 220
Query: 409 RKMIGLAVAVVRNCAPQSLIETAL----QKDVNINVPTAPEVGLYL 450
R M+GL V V + P S++ T L ++++ P AP GLYL
Sbjct: 221 RNMVGLLVQVGKELVPPSMVRTILLTEDRRELAKISPVAPAHGLYL 266
>gi|257054500|ref|YP_003132332.1| pseudouridylate synthase I [Saccharomonospora viridis DSM 43017]
gi|256584372|gb|ACU95505.1| pseudouridylate synthase I [Saccharomonospora viridis DSM 43017]
Length = 300
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 23/134 (17%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I +Y G + G + PG +T++G LE+AL +++ G + RTD
Sbjct: 16 RLRIDLSYDGTDFSGWARQPGRRTVQGVLEDAL------AKQPPGASIAGPVVVAGRTDA 69
Query: 121 GVSAVGQVVS-----------GRFCIDPPGLVE------RLNSNLPTQIRIFGYKRVTAS 163
GV A+GQVV R I GL + RLN LP +R+ +R A
Sbjct: 70 GVHAIGQVVHVDVTRLAGETRSRMPISSDGLPDLDWARYRLNRVLPADVRVLSIRRAPAG 129
Query: 164 FNAKKFCDQRRYVY 177
F+A+ +R Y Y
Sbjct: 130 FDARFSAVKRHYRY 143
>gi|319779623|ref|YP_004130536.1| tRNA pseudouridine synthase A [Taylorella equigenitalis MCE9]
gi|397661854|ref|YP_006502554.1| tRNA pseudouridine synthase A [Taylorella equigenitalis ATCC 35865]
gi|317109647|gb|ADU92393.1| tRNA pseudouridine synthase A [Taylorella equigenitalis MCE9]
gi|394350033|gb|AFN35947.1| tRNA pseudouridine synthase A [Taylorella equigenitalis ATCC 35865]
gi|399114936|emb|CCG17732.1| tRNA pseudouridine synthase A [Taylorella equigenitalis 14/56]
Length = 268
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEAL--FHSGAVSERDRGNPRRYDWARSART 118
++A+ +Y G +QG Q P T++ LE AL F VS G RT
Sbjct: 4 RVALGISYDGRDFQGWQTQPNGLTVQDKLEAALREFTRHQVSTICAG-----------RT 52
Query: 119 DKGVSAVGQVVSGRFCID--PPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
D GV A+GQVV +D + +NS+LP IR+ K V SF+A+ R YV
Sbjct: 53 DTGVHALGQVVHFDTEVDRNLESWIRGVNSHLPDSIRVRWSKIVPDSFSARFSAVSRTYV 112
Query: 177 YLLPVFALDSSSHRDRESVMASLGSG 202
YLL E VM+ + SG
Sbjct: 113 YLL-----------RNERVMSPIWSG 127
>gi|411119491|ref|ZP_11391871.1| pseudouridylate synthase I [Oscillatoriales cyanobacterium JSC-12]
gi|410711354|gb|EKQ68861.1| pseudouridylate synthase I [Oscillatoriales cyanobacterium JSC-12]
Length = 283
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 19/126 (15%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
+++A+ Y G + G Q P +T++ ++E+AL HS G+P R + RTD
Sbjct: 10 QRVALVIQYLGTHFHGWQWQPNYRTVQDEIEQAL-HSVI------GHPVRIH--GAGRTD 60
Query: 120 KGVSAVGQVVSGRFCIDPPGLV------ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQR 173
GV A QV + PG V + LNS LP I I V+++++A+ R
Sbjct: 61 TGVHAAAQVAH----FEAPGQVPAHRWADILNSRLPGDILIRASASVSSAWHARFSAIWR 116
Query: 174 RYVYLL 179
RY YLL
Sbjct: 117 RYRYLL 122
>gi|284992843|ref|YP_003411397.1| tRNA pseudouridine synthase A [Geodermatophilus obscurus DSM 43160]
gi|284066088|gb|ADB77026.1| tRNA pseudouridine synthase A [Geodermatophilus obscurus DSM 43160]
Length = 282
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ + AY G G + P +T++GDLEEAL R P + RTD
Sbjct: 20 RLRLGIAYDGTALHGWARQPAQRTVQGDLEEAL-------SRVLRQP--VSLTVAGRTDA 70
Query: 121 GVSAVGQVVSGR-----FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
GV A GQV G + P LV RL LP I + + F+A+ +R Y
Sbjct: 71 GVHATGQVAHGDVPRAVWAEQRPRLVRRLRGVLPPDIAVHTVEEAPRDFDARFGALRRHY 130
Query: 176 VYLL 179
VY L
Sbjct: 131 VYRL 134
>gi|333373218|ref|ZP_08465134.1| tRNA pseudouridine synthase A [Desmospora sp. 8437]
gi|332970797|gb|EGK09777.1| tRNA pseudouridine synthase A [Desmospora sp. 8437]
Length = 258
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
KI + AY G + G Q+ PG +T++G LEE L + G + RTD
Sbjct: 3 KIKLTVAYDGTDFSGFQRQPGKRTVQGTLEETLTRVTGETISVTG---------AGRTDA 53
Query: 121 GVSAVGQVVSGRFCIDPPG--LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A+GQV+ + P V LN++LP + + K V F+A+ + Y Y
Sbjct: 54 GVHALGQVIHFETSVPIPTERWVRLLNASLPRDLLVTQAKEVPREFHARYDACWKHYRYT 113
Query: 179 L 179
L
Sbjct: 114 L 114
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 343 KKRFNRILKHYVGSHNFHNFTT-RTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQ 401
+ R R +H G+H+F +F+ R + +D RR + VN G+ L EVVG
Sbjct: 137 RDRMQRAARHLTGTHDFTSFSAARAQVKD---RRRSLYHCEVKEVN-PGV--LSIEVVGD 190
Query: 402 SFMLHQIRKMIGLAVAVVRNCAPQSLIETALQ-KDVNINVPTAPEVGLYLDECIFASYNK 460
F+ H +R + G V + P I L+ KD + T P GL + E + + +
Sbjct: 191 GFLYHMVRILTGTLVEIGAGKIPPDEIRGILKAKDRSAAGKTFPPEGLVMVEVGYTPWER 250
>gi|385808937|ref|YP_005845333.1| tRNA pseudouridine synthase A [Ignavibacterium album JCM 16511]
gi|383800985|gb|AFH48065.1| tRNA pseudouridine synthase A [Ignavibacterium album JCM 16511]
Length = 287
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+ +F Y G + G QK P A+TI+G+L +A E+ G+ D S RTD
Sbjct: 26 RFKLFLEYEGTRFSGWQKQPNARTIQGELIKA-------CEKIFGDD-FVDLQGSGRTDS 77
Query: 121 GVSAVGQV--VSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A+ QV + + + P + +LN +LP I I ++ +F+A+ R Y+Y
Sbjct: 78 GVHALCQVAHLDAKTVLAPEIIKLKLNDSLPHDINILEVEKARKNFHARHDVKSRSYIY 136
>gi|294901661|ref|XP_002777462.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC
50983]
gi|239885099|gb|EER09278.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC
50983]
Length = 387
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 68 YCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQ 127
Y GV +Q Q+ G T+E +L + L + + R D++R RTDKGV A G
Sbjct: 66 YAGVAWQN-QEAFGVNTVENELFKGLVKTCLIESR-----MSCDFSRCGRTDKGVHARGN 119
Query: 128 VVSGRFCIDPPG----LVERLNSNLPTQIRIFGYKRVTA-SFNAKKFCDQRRYVYLLPVF 182
+ R + P G ++ +N LP IR+ V + F+A+ C R Y Y P
Sbjct: 120 YATLRLRLKPDGTEFPYIQMINRVLPDDIRVLRICSVPSDDFDARFSCKSRTYKYFFPST 179
Query: 183 ALD 185
LD
Sbjct: 180 GLD 182
>gi|317495541|ref|ZP_07953909.1| tRNA pseudouridine synthase A [Gemella morbillorum M424]
gi|316914355|gb|EFV35833.1| tRNA pseudouridine synthase A [Gemella morbillorum M424]
Length = 265
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ + Y G GY G Q P T++ ++E+AL + ++ + R Y S RTD
Sbjct: 2 RVVLLCRYDGSGYHGFQIQPNNNTVQEEIEKAL------KKINKKDIRVY---MSGRTDS 52
Query: 121 GVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A GQV+ ++ P + LN+NLP IRIFG F+ + ++ Y Y
Sbjct: 53 GVHAYGQVLHFDTELNIPNEAWKKALNANLPADIRIFGVTTSNEDFHVRYNSTRKTYHYK 112
Query: 179 LPV 181
L +
Sbjct: 113 LYI 115
>gi|291437810|ref|ZP_06577200.1| pseudouridylate synthase [Streptomyces ghanaensis ATCC 14672]
gi|291340705|gb|EFE67661.1| pseudouridylate synthase [Streptomyces ghanaensis ATCC 14672]
Length = 284
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAK-TIEGDLEEAL---FHSGAVSERDRGNPRRYDWARSA 116
++ + +Y G G+ G K G + T++G++E+AL SG Y+ +
Sbjct: 11 RVRLDLSYDGAGFHGWAKQAGGRRTVQGEVEDALRTVTRSGTT----------YELTVAG 60
Query: 117 RTDKGVSAVGQVV-----SGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCD 171
RTD GV A GQV +G + L++RL LP +R++ + A F+A+
Sbjct: 61 RTDAGVHARGQVAHVDLPAGVWAEHKGKLLKRLAGRLPKDVRVWALREAPAGFDARFSAV 120
Query: 172 QRRYVY 177
RRY Y
Sbjct: 121 WRRYAY 126
>gi|385300994|gb|EIF45229.1| putative trna pseudouridine synthase [Dekkera bruxellensis
AWRI1499]
Length = 443
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHS-GAVSERDRGNPRRYDWARSART 118
R IA+ F+Y G YQG+ G T +EE + + V NP + ++R RT
Sbjct: 85 RHIALKFSYLGWDYQGLALQ-GLPTDRPTVEEVIIKALQQVRLVQSANPADFLFSRCGRT 143
Query: 119 DKGVSAVGQVVSGRF--------CIDPPG------LVERLNSNLPTQIRIFGY-KRVTAS 163
D+GVSA+ QV+S R DP ++ LN LP IR R
Sbjct: 144 DRGVSAMNQVISLRVRSRLTKEQLKDPANDNLELDYIKMLNHVLPADIRFHAICVRPPKG 203
Query: 164 FNAKKFCDQRRYVYLLPVFALDSSSHR 190
F+A+ C R+Y Y+ LD R
Sbjct: 204 FDARFSCQWRQYKYIFNSKGLDIDRMR 230
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 345 RFNRILKHYVGSHNFHNFTTRTKAED-PSARRYIISFGADSVVNVEGIDFLKCEVVGQSF 403
R + + +VG H+F NF ++ + R + S +S+ G ++ G +F
Sbjct: 228 RMRKAAQMFVGQHDFRNFCKVDGSKQLKNFTREVYSTAIESLEQEPGFSVF--DLKGSAF 285
Query: 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQKD-VNINV-PTAP------EVGLYLDECIF 455
+ HQ+R M+ + + + Q L E + KD +NIN+ P P ++ L L +C +
Sbjct: 286 LWHQVRYMVAVLLTI-----GQKLEEPTIVKDLLNINMYPCRPAYKLAHDIPLILYDCGY 340
Query: 456 ASYNKKW 462
KW
Sbjct: 341 DPQTVKW 347
>gi|449446486|ref|XP_004141002.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Cucumis
sativus]
Length = 455
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 23/143 (16%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
C +R IA+ Y G + G +E +E +F + + G + ++R
Sbjct: 109 CSKRYIALKVMYFGQRFYGFASEA---QMEPTVESEIFRALEKARLLVGGRKESCYSRCG 165
Query: 117 RTDKGVSAVGQVVSGRF---CIDPPG-----------------LVERLNSNLPTQIRIFG 156
RTDKGVS+VGQV++ DPP V +N LP IR+ G
Sbjct: 166 RTDKGVSSVGQVIALYLRSNLKDPPNGENSCHNGEEQHDGEIDYVRVINKVLPNDIRVLG 225
Query: 157 YKRVTASFNAKKFCDQRRYVYLL 179
+ V F+A+ C +R+Y Y
Sbjct: 226 WCSVPVGFSARFSCLRRKYKYFF 248
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 348 RILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV-VNVEGIDFLKCEVVGQSFMLH 406
R K +VG H+F NF A + RR I+SF V EG + G +F+ H
Sbjct: 260 RAGKKFVGEHDFRNFCKMDAANVHNYRRRIMSFDISPCDVRTEGNPLWAFNIEGSAFLWH 319
Query: 407 QIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVP---TAPEVGLYLDECIF 455
Q+R M+ + V ++ +I+ L P A E L L C F
Sbjct: 320 QVRCMVAVVFMVGQDLEDPDVIDILLDPLRTPRKPQYVMASENSLVLHSCEF 371
>gi|448537283|ref|ZP_21622558.1| tRNA pseudouridine synthase A [Halorubrum hochstenium ATCC 700873]
gi|445702127|gb|ELZ54090.1| tRNA pseudouridine synthase A [Halorubrum hochstenium ATCC 700873]
Length = 322
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 49 DSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERD---RG 105
DS+ + + + ++A Y G G+ G Q+ P A T+ L AL G V D
Sbjct: 4 DSSARETVTRAFRVA----YDGRGFAGFQRQPHAHTVSDALLAALDEHGIVERGDGPTHA 59
Query: 106 NPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASF 164
P Y A + RTD GVSAV Q V+ P L R N +LP +R++ V F
Sbjct: 60 TPPGY--AAAGRTDAGVSAVAQTVA---FEAPTWLTPRAFNGHLPGTVRVWAAADVREDF 114
Query: 165 NAKKFCDQRRYVYLL 179
+A +R Y Y L
Sbjct: 115 HATHDAVRRTYRYHL 129
>gi|419851917|ref|ZP_14374823.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. longum
2-2B]
gi|386412197|gb|EIJ26879.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. longum
2-2B]
Length = 200
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I AY G G+ G K P +T++G +E+AL V D P R A RTD
Sbjct: 3 RLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVA--GRTDT 60
Query: 121 GVSAVGQVVS------------GRFCID-PPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
GV A QV G I L RL + LP+ I I G F+A+
Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 120
Query: 168 KFCDQRRYVY 177
+R YVY
Sbjct: 121 FSALERTYVY 130
>gi|337283917|ref|YP_004623391.1| tRNA pseudouridine synthase A [Pyrococcus yayanosii CH1]
gi|334899851|gb|AEH24119.1| tRNA pseudouridine synthase A [Pyrococcus yayanosii CH1]
Length = 266
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
K+A+ AY G + G Q+ P +T+EG+L L G P D+ ++RTDK
Sbjct: 2 KVALRIAYDGTQFHGFQRQPSLRTVEGELLRVLEEVGL-------EP--VDFKGASRTDK 52
Query: 121 GVSAVGQVVSGRFCIDPPGLVER--LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GVSA G VV+ D LV+ LN+ L + + G +V F+ + + + Y Y
Sbjct: 53 GVSAFGNVVAFTVPDDAAHLVKPRVLNARL-EDVWVLGVAKVPKDFHPRFWAKSKVYRYY 111
Query: 179 LPVFALDSSSHRD 191
L + L+ + R+
Sbjct: 112 LVGWGLNVGAMRE 124
>gi|328770686|gb|EGF80727.1| hypothetical protein BATDEDRAFT_3084 [Batrachochytrium
dendrobatidis JAM81]
Length = 289
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 63/150 (42%), Gaps = 17/150 (11%)
Query: 58 KRRKIAIFFAYCGVGYQGMQK--NPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+ R IA+ +Y G Y G N T+E + +AL + D G W+R
Sbjct: 22 RARHIALKISYIGDKYYGFASASNDSVPTVESYIFKAL-EVARLIPSDGGA---CAWSRC 77
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPG-----------LVERLNSNLPTQIRIFGYKRVTASF 164
RTDKGVSA QVVS PG + LN LP IR+ + V F
Sbjct: 78 GRTDKGVSAFDQVVSVWVRTARPGDRDTLDWDQLPYLNILNRLLPDDIRVLAWSPVDPIF 137
Query: 165 NAKKFCDQRRYVYLLPVFALDSSSHRDRES 194
+A+ C R+Y Y LD + RD S
Sbjct: 138 DARFTCSHRKYNYFFDGAGLDLIAMRDAAS 167
>gi|365926312|ref|ZP_09449075.1| tRNA pseudouridine synthase [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 255
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 56 LCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+ KR I + AY G + G Q P +T++ LE+A+ E S
Sbjct: 1 MSKRYMITL--AYDGTNFAGFQSQPNQRTVQDVLEKAVNKMSTAKEFVH-------IFGS 51
Query: 116 ARTDKGVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQR 173
RTD GV A GQ+V D P G+V LNS LP +++ K V+ F+A+ +
Sbjct: 52 GRTDAGVHAFGQIVHFDLENDIPAQGIVNGLNSMLPLDMQVVDAKIVSKEFHARFTAHGK 111
Query: 174 RYVY 177
RY+Y
Sbjct: 112 RYMY 115
>gi|311744771|ref|ZP_07718567.1| tRNA pseudouridine synthase A [Aeromicrobium marinum DSM 15272]
gi|311311888|gb|EFQ81809.1| tRNA pseudouridine synthase A [Aeromicrobium marinum DSM 15272]
Length = 262
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYD----WARSA 116
++ I AY G ++G PG +T++G +E AL G R D +
Sbjct: 2 RLRIDLAYDGTDFRGWAVQPGQRTVQGVIESAL-----------GTMLRLDPTPTLTCAG 50
Query: 117 RTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
RTD GV A GQV P L RL LP IRI F+A+ +RRYV
Sbjct: 51 RTDAGVHARGQVAHVDLDTHPGVLERRLRRYLPDDIRIKSVVEAPPGFDARFAATERRYV 110
Query: 177 Y 177
Y
Sbjct: 111 Y 111
>gi|317483422|ref|ZP_07942412.1| tRNA pseudouridine synthase A [Bifidobacterium sp. 12_1_47BFAA]
gi|316915108|gb|EFV36540.1| tRNA pseudouridine synthase A [Bifidobacterium sp. 12_1_47BFAA]
Length = 303
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I AY G G+ G K P +T++G +E+AL V D P R A RTD
Sbjct: 3 RLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVA--GRTDT 60
Query: 121 GVSAVGQVVS------------GRFCID-PPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
GV A QV G I L RL + LP+ I I G F+A+
Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 120
Query: 168 KFCDQRRYVY 177
+R YVY
Sbjct: 121 FSALERTYVY 130
>gi|384200789|ref|YP_005586536.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. longum
KACC 91563]
gi|338753796|gb|AEI96785.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. longum
KACC 91563]
Length = 303
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I AY G G+ G K P +T++G +E+AL V D P R A RTD
Sbjct: 3 RLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVA--GRTDT 60
Query: 121 GVSAVGQVVS------------GRFCID-PPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
GV A QV G I L RL + LP+ I I G F+A+
Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 120
Query: 168 KFCDQRRYVY 177
+R YVY
Sbjct: 121 FSALERTYVY 130
>gi|227546504|ref|ZP_03976553.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. longum
ATCC 55813]
gi|227213053|gb|EEI80932.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 305
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I AY G G+ G K P +T++G +E+AL V D P R A RTD
Sbjct: 5 RLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVA--GRTDT 62
Query: 121 GVSAVGQVVS------------GRFCID-PPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
GV A QV G I L RL + LP+ I I G F+A+
Sbjct: 63 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 122
Query: 168 KFCDQRRYVY 177
+R YVY
Sbjct: 123 FSALERTYVY 132
>gi|225175641|ref|ZP_03729635.1| tRNA pseudouridine synthase A [Dethiobacter alkaliphilus AHT 1]
gi|225168970|gb|EEG77770.1| tRNA pseudouridine synthase A [Dethiobacter alkaliphilus AHT 1]
Length = 246
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 62 IAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKG 121
I + Y G GY G Q A T++ LEEA+ E+ G R S RTD G
Sbjct: 4 IKLTLGYDGTGYHGFQLQKNAVTVQQKLEEAI-------EKVMGQKVRI--TASGRTDTG 54
Query: 122 VSAVGQVVS--GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
V A GQV++ + I P + LN+ LP I I+ + V+ SF+A+ + Y Y
Sbjct: 55 VHATGQVINFFAQTGIPPQRIPHALNAVLPRDIVIYAAEIVSDSFHARFDAVGKTYTY-- 112
Query: 180 PVFALDSSSH 189
+D+ +H
Sbjct: 113 ---TIDNGAH 119
>gi|187917895|ref|YP_001883458.1| tRNA pseudouridine synthase A [Borrelia hermsii DAH]
gi|238689303|sp|B2S1K1.1|TRUA_BORHD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|119860743|gb|AAX16538.1| tRNA pseudouridine synthase A [Borrelia hermsii DAH]
Length = 245
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 22/159 (13%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
+KI AY G Y G Q P TI+G++E+AL ++ + + + RTD
Sbjct: 2 KKILAEIAYDGSLYYGFQIQPTKPTIQGEIEKAL---------EKISKTKVKVHSAGRTD 52
Query: 120 KGVSAVGQVVSG--RFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
KGV A GQ++S R I L +NS L IRI K V F + +R+Y Y
Sbjct: 53 KGVHARGQIISFYIRINIKLKNLKTAINSLLRKDIRIIKLKYVADEFQPRFNAKRRKYSY 112
Query: 178 LLPVFALDSSSHRDRESVMA-------SLGSGNELVKCL 209
+ L++ +H E A ++ NE+ K L
Sbjct: 113 ----YILNNENHYPWEGYQAYYVKKKLNINRLNEMAKML 147
>gi|193212885|ref|YP_001998838.1| tRNA pseudouridine synthase A [Chlorobaculum parvum NCIB 8327]
gi|193086362|gb|ACF11638.1| tRNA pseudouridine synthase A [Chlorobaculum parvum NCIB 8327]
Length = 238
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 12/115 (10%)
Query: 68 YCGVGYQGMQKNPG-AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
Y G Y G Q+ PG T++G++E L G +++ P D A RTD+GV A G
Sbjct: 5 YDGTDYSGWQRQPGDVVTVQGEIERVL---GRITQ----EPVSIDGA--GRTDRGVHARG 55
Query: 127 QVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
QV S + P ++ NS LP+ IRI ++V SF+A+ R Y Y+L
Sbjct: 56 QVASFAVASEMPLGRMMHSANSLLPSTIRITSMRQVPESFHARFSATSREYRYVL 110
>gi|11499319|ref|NP_070558.1| tRNA pseudouridine synthase A [Archaeoglobus fulgidus DSM 4304]
gi|3915163|sp|O28544.1|TRUA_ARCFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|2648818|gb|AAB89516.1| pseudouridylate synthase I (truA) # [Archaeoglobus fulgidus DSM
4304]
Length = 265
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA-RTD 119
K A AY G + G Q P +T+EG++ AL G NPR RSA RTD
Sbjct: 3 KFAFKIAYFGDNFHGSQFQPDQRTVEGEVINALRRLGV------ENPR----LRSAGRTD 52
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
GV A GQV+S F + LN+ LP I + + +V+ F+ ++ R Y Y++
Sbjct: 53 AGVHAYGQVIS--FYSEDKIFPRMLNAELPEDITAWAWAKVSEDFDPRR-AKSRVYTYVM 109
Query: 180 PVFALDSSSHR 190
D S+ R
Sbjct: 110 YGSDYDISAMR 120
>gi|322691842|ref|YP_004221412.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. longum
JCM 1217]
gi|320456698|dbj|BAJ67320.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. longum
JCM 1217]
Length = 303
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I AY G G+ G K P +T++G +E+AL V D P R A RTD
Sbjct: 3 RLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPADDAAEPLRLTVA--GRTDT 60
Query: 121 GVSAVGQVVS------------GRFCID-PPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
GV A QV G I L RL + LP+ I I G F+A+
Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 120
Query: 168 KFCDQRRYVY 177
+R YVY
Sbjct: 121 FSALERTYVY 130
>gi|23466158|ref|NP_696761.1| tRNA pseudouridine synthase A [Bifidobacterium longum NCC2705]
gi|46190438|ref|ZP_00121526.2| COG0101: Pseudouridylate synthase [Bifidobacterium longum DJO10A]
gi|189440597|ref|YP_001955678.1| pseudouridylate synthase [Bifidobacterium longum DJO10A]
gi|239621038|ref|ZP_04664069.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|296454842|ref|YP_003661986.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. longum
JDM301]
gi|312133902|ref|YP_004001241.1| trua [Bifidobacterium longum subsp. longum BBMN68]
gi|322689901|ref|YP_004209635.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. infantis
157F]
gi|419849002|ref|ZP_14372076.1| tRNA pseudouridine(38-40) synthase [Bifidobacterium longum subsp.
longum 35B]
gi|42559815|sp|Q8CY46.1|TRUA_BIFLO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238692041|sp|B3DQE2.1|TRUA_BIFLD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|23326895|gb|AAN25397.1| tRNA pseudouridine synthase A [Bifidobacterium longum NCC2705]
gi|189429032|gb|ACD99180.1| Pseudouridylate synthase [Bifidobacterium longum DJO10A]
gi|239516139|gb|EEQ56006.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|291516444|emb|CBK70060.1| pseudouridylate synthase I [Bifidobacterium longum subsp. longum
F8]
gi|296184274|gb|ADH01156.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. longum
JDM301]
gi|311773196|gb|ADQ02684.1| TruA [Bifidobacterium longum subsp. longum BBMN68]
gi|320461237|dbj|BAJ71857.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. infantis
157F]
gi|386413196|gb|EIJ27812.1| tRNA pseudouridine(38-40) synthase [Bifidobacterium longum subsp.
longum 35B]
Length = 303
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I AY G G+ G K P +T++G +E+AL V D P R A RTD
Sbjct: 3 RLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVA--GRTDT 60
Query: 121 GVSAVGQVVS------------GRFCID-PPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
GV A QV G I L RL + LP+ I I G F+A+
Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 120
Query: 168 KFCDQRRYVY 177
+R YVY
Sbjct: 121 FSALERTYVY 130
>gi|430748644|ref|YP_007211552.1| pseudouridylate synthase I [Thermobacillus composti KWC4]
gi|430732609|gb|AGA56554.1| pseudouridylate synthase I [Thermobacillus composti KWC4]
Length = 258
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R IA+ +Y G Y+G Q PG TI+ +LE A+ R G S RTD
Sbjct: 2 RNIALIVSYDGTAYRGFQTQPGGGTIQDELERAIRSLTGTDIRVEG---------SGRTD 52
Query: 120 KGVSAVGQVVSGRFCIDPPGLVER----LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
GV A+GQVV+ F + P +E+ LN LP I + + F+A+ ++ Y
Sbjct: 53 AGVHALGQVVN--FRTETPIPIEKWALALNGRLPDDIIVRSAHEMPEDFHARYSAIRKTY 110
Query: 176 VY 177
Y
Sbjct: 111 RY 112
>gi|378754991|gb|EHY65019.1| hypothetical protein NERG_02075 [Nematocida sp. 1 ERTm2]
Length = 326
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 58/140 (41%), Gaps = 23/140 (16%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAV-SERDRGNPRRYDWARS--- 115
R + + +Y G Y G PG T+E L + + + +E + P + W +
Sbjct: 6 RNVLLKLSYNGQNYHGFAYQPGLPTVEHHLFLSFVKAKFIQAEEKQVRPSTFVWPKEILS 65
Query: 116 ----------ARTDKGVSAVGQVVSGRFCIDPPG------LVERLNSNLPTQIRIFGYKR 159
RTD GVSA Q VS F P G L+ LN +LP IR+ G+
Sbjct: 66 GIAERKYYKCGRTDAGVSAASQFVS-LFLPAPAGKEYPYDLI--LNQHLPEDIRVLGWMF 122
Query: 160 VTASFNAKKFCDQRRYVYLL 179
V F+A+ C R Y Y
Sbjct: 123 VDDQFSARFSCISREYEYYF 142
>gi|419846976|ref|ZP_14370179.1| tRNA pseudouridine(38-40) synthase [Bifidobacterium longum subsp.
longum 1-6B]
gi|419855019|ref|ZP_14377788.1| tRNA pseudouridine(38-40) synthase [Bifidobacterium longum subsp.
longum 44B]
gi|386412520|gb|EIJ27187.1| tRNA pseudouridine(38-40) synthase [Bifidobacterium longum subsp.
longum 1-6B]
gi|386416299|gb|EIJ30803.1| tRNA pseudouridine(38-40) synthase [Bifidobacterium longum subsp.
longum 44B]
Length = 303
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I AY G G+ G K P +T++G +E+AL V D P R A RTD
Sbjct: 3 RLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPADDAAEPLRLTVA--GRTDT 60
Query: 121 GVSAVGQVVS------------GRFCID-PPGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
GV A QV G I L RL + LP+ I I G F+A+
Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 120
Query: 168 KFCDQRRYVY 177
+R YVY
Sbjct: 121 FSALERTYVY 130
>gi|384156706|ref|YP_005539521.1| tRNA pseudouridine synthase [Arcobacter butzleri ED-1]
gi|345470260|dbj|BAK71711.1| tRNA pseudouridine synthase [Arcobacter butzleri ED-1]
Length = 240
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G +QG QK P KT+E +L +A + ++ S RTDK V + G
Sbjct: 8 AYDGSLFQGSQKQPNGKTVENELLKAFENINIKTQ----------IVLSGRTDKEVHSSG 57
Query: 127 QVVSGR---FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
QV + + + D L E LN NLPT I+I +V SF+++ +R Y YL+
Sbjct: 58 QVFNCQIPSYWEDFFKLKEILNKNLPTSIKIKKISKVDESFHSRFSAKKRVYRYLI 113
>gi|315636694|ref|ZP_07891924.1| tRNA pseudouridine synthase A [Arcobacter butzleri JV22]
gi|315479009|gb|EFU69712.1| tRNA pseudouridine synthase A [Arcobacter butzleri JV22]
Length = 240
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G +QG QK P KT+E +L +A + ++ S RTDK V + G
Sbjct: 8 AYDGSLFQGSQKQPNGKTVENELLKAFENINIKTQ----------IVLSGRTDKEVHSSG 57
Query: 127 QVVSGR---FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
QV + + + D L E LN NLPT I+I +V SF+++ +R Y YL+
Sbjct: 58 QVFNCQIPSYWEDFFKLKEILNKNLPTSIKIKKISKVEESFHSRFSAKKRVYRYLI 113
>gi|330837397|ref|YP_004412038.1| tRNA pseudouridine synthase A [Sphaerochaeta coccoides DSM 17374]
gi|329749300|gb|AEC02656.1| tRNA pseudouridine synthase A [Sphaerochaeta coccoides DSM 17374]
Length = 299
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R++ + AY G GY G Q A +++ ++E+AL+ S G S RTD
Sbjct: 20 RRVRMTVAYDGTGYSGWQHQRNAPSVQAEIEDALYRLTGHSVTVVG---------SGRTD 70
Query: 120 KGVSAVGQVVSG-----RFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQR 173
GV A+GQV RF P + +R LN+ LP IRI + SF+A+ R
Sbjct: 71 SGVHALGQVCHFDLPDERF---PAVVFKRALNAFLPPAIRIMDSEETNDSFHARFSAMAR 127
Query: 174 RYVYLLPVFALDSSSHRDRESVMASLGSGNELV 206
Y YL+ RE+ M SG V
Sbjct: 128 EYRYLI-----------KREADMTPFDSGRVWV 149
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 360 HNFTTRTKAEDPSARRYIISFGADSVV--NVEGIDFLKCEVVGQSFMLHQIRKMIGLAVA 417
H+FTT T A D RR+ + +D V ++ G + L + G +F+ +R ++G
Sbjct: 170 HDFTTFTAAGDMCERRHRDIYVSDFSVEKDIHGAEVLVYTICGNAFLYKMVRSIVGTLFF 229
Query: 418 VVRNCAPQSLIETALQ---KDVNINVPTAPEVGLYLDECIFASYNKKW 462
+V P + ETA + +D + TA GLYL F +W
Sbjct: 230 LVLGGVPAT--ETARRLAARDRSQAGRTASAHGLYLSRISFDEKEYEW 275
>gi|374307823|ref|YP_005054254.1| tRNA pseudouridine synthase A [Filifactor alocis ATCC 35896]
gi|291166165|gb|EFE28211.1| tRNA pseudouridine synthase A [Filifactor alocis ATCC 35896]
Length = 244
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 15/137 (10%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
+ I + Y G Y G QK K+I+ ++E A+ ++ + S RTD
Sbjct: 3 QNILLKIQYIGTNYCGWQKQNNGKSIQQEIERAICEVTG---------KQVNLTGSGRTD 53
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERL----NSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
GV A+GQV + F ID VE++ N LP IRI K V SF+A+ ++ Y
Sbjct: 54 SGVHALGQVAN--FVIDTTIPVEKIKYAINYYLPDDIRIIESKAVEDSFHARYSSKKKTY 111
Query: 176 VYLLPVFALDSSSHRDR 192
Y + + ++S ++R
Sbjct: 112 CYRINMNEIESPFEKNR 128
>gi|257387360|ref|YP_003177133.1| tRNA pseudouridine synthase A [Halomicrobium mukohataei DSM 12286]
gi|257169667|gb|ACV47426.1| tRNA pseudouridine synthase [Halomicrobium mukohataei DSM 12286]
Length = 263
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 13/117 (11%)
Query: 66 FAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGN-PRRYDWARSARTDKGVSA 124
AY G Y G Q+ P +T+EG+L L G + G+ P Y A + RTD GVSA
Sbjct: 6 IAYDGQPYHGFQRQPDVETVEGELLATLDRLGVTA----GDVPAGY--AAAGRTDAGVSA 59
Query: 125 VGQVVSGRFCIDPPGLVE--RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
+ Q V+ + P + NS LP +R++ V F+A +R YVY L
Sbjct: 60 LAQTVA----FEAPEWLSPAAFNSELPASVRVWASADVPDDFHATHDAREREYVYYL 112
>gi|157738399|ref|YP_001491083.1| tRNA pseudouridine synthase A [Arcobacter butzleri RM4018]
gi|157700253|gb|ABV68413.1| tRNA pseudouridine synthase A [Arcobacter butzleri RM4018]
Length = 240
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G +QG QK P KT+E +L +A + ++ S RTDK V + G
Sbjct: 8 AYDGSLFQGSQKQPNGKTVENELLKAFENINIKTQ----------IVLSGRTDKEVHSSG 57
Query: 127 QVVSGR---FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
QV + + + D L E LN NLPT I+I +V SF+++ +R Y YL+
Sbjct: 58 QVFNCQIPSYWEDFFKLKEILNKNLPTSIKIKKISKVDESFHSRFSAKKRVYRYLI 113
>gi|242215757|ref|XP_002473691.1| predicted protein [Postia placenta Mad-698-R]
gi|220727176|gb|EED81103.1| predicted protein [Postia placenta Mad-698-R]
Length = 495
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 73/203 (35%), Gaps = 65/203 (32%)
Query: 52 TKRQLCKR----------RKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGA 98
T LCKR RKIA+ F Y G Y G+ QK P T+E L +AL H+
Sbjct: 30 TAEPLCKRKVFDFSAHPRRKIALKFTYNGADYSGLEFQKTPTTLPTVEAVLFDALVHTRL 89
Query: 99 VSERDRGNPRRYDWARSARTDKGVSAVGQVVS-------------------GRFCIDPPG 139
+ W + RTD+GVSA GQV+S + P G
Sbjct: 90 IDPATGFE--GCGWEKCGRTDRGVSAAGQVISLWVRSALGQARVRTSLEDANVMDVHPTG 147
Query: 140 L-------------------------------VERLNSNLPTQIRIFGYKRVTASFNAKK 168
L + LN+ LP IR+ + V F+A+
Sbjct: 148 LEGDLALMGEWDETPTNAARPATPQATNELRYITLLNNVLPPTIRVIAWSPVGPDFSARF 207
Query: 169 FCDQRRYVYLLPVFALDSSSHRD 191
C R Y Y LD ++ +D
Sbjct: 208 SCRYRHYKYFFSPEGLDLAAMQD 230
>gi|291551097|emb|CBL27359.1| pseudouridylate synthase I [Ruminococcus torques L2-14]
Length = 244
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAK-TIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
R + AY G YQG Q+ + T++G LE + +V+ G P D S RT
Sbjct: 2 RTYKLTIAYDGTAYQGWQRQANTENTLQGTLERTI---SSVA----GYPVEIDG--SGRT 52
Query: 119 DKGVSAVGQ----VVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
D GV A GQ V+SGR ++ E++NS LP IRI + V F+A+K ++
Sbjct: 53 DAGVHANGQTATVVLSGR--VEDGFFTEKINSRLPEDIRILDAELVRNGFHARKSAVGKK 110
Query: 175 YVYLL 179
Y+Y L
Sbjct: 111 YIYQL 115
>gi|448319614|ref|ZP_21509110.1| tRNA pseudouridine synthase A [Natronococcus amylolyticus DSM
10524]
gi|445607607|gb|ELY61487.1| tRNA pseudouridine synthase A [Natronococcus amylolyticus DSM
10524]
Length = 285
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G Y G Q+ P T+E L +AL G V E D P Y A + RTD GV
Sbjct: 5 AFRIAYDGSDYYGFQRQPDVPTVEDALFDALRAHG-VLESDARKPAGY--AAAGRTDAGV 61
Query: 123 SAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
SA+ Q V P L R N LP +R + F+A +R Y Y L
Sbjct: 62 SALAQTVG---LEAPSWLTPRAFNGELPADVRAWAAADPADGFHATHHATRREYTYHL 116
>gi|189236260|ref|XP_974416.2| PREDICTED: similar to pseudouridylate synthase [Tribolium
castaneum]
Length = 275
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 55 QLCKRRKIAIFFAYCGVGYQG-MQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWA 113
Q CK R + + F Y G YQG + + TIE + AL + + R N +
Sbjct: 51 QNCKFRHVLLKFLYLGWDYQGYVTQEDTVNTIEHHVFNALIKTCLIENRSSAN-----YH 105
Query: 114 RSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQR 173
R RTDKGV ++ +G + LN LP I+ + V ++F+A+ C R
Sbjct: 106 RCGRTDKGVISLDLRSNGDDFESEINYCKILNRVLPENIQFVAWCPVESAFSARFDCKNR 165
Query: 174 RYVYLLPVFALDSSSHR 190
Y Y P LD + +
Sbjct: 166 TYKYFFPKSNLDIDAMK 182
>gi|327398248|ref|YP_004339117.1| tRNA pseudouridine synthase A [Hippea maritima DSM 10411]
gi|327180877|gb|AEA33058.1| tRNA pseudouridine synthase A [Hippea maritima DSM 10411]
Length = 241
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G Y G Q P KT++G++E+AL +R R ++A RTD GV A
Sbjct: 8 AYDGTNYSGFQIQPDVKTVQGEIEKAL-------KRIFKTDLRINFA--GRTDAGVHAFE 58
Query: 127 QVVSGRFC--IDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 184
QV+ I+ L + LNS LP IRI K V SF+++ R YVY FA
Sbjct: 59 QVIDFPVIADIETYSLKKALNSVLPEDIRIKSVKIVDNSFHSRYSAKFREYVY----FAF 114
Query: 185 D 185
D
Sbjct: 115 D 115
>gi|56961964|ref|YP_173686.1| pseudouridylate synthase [Bacillus clausii KSM-K16]
gi|62901228|sp|Q5WLN0.1|TRUA_BACSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|56908198|dbj|BAD62725.1| pseudouridylate synthase I [Bacillus clausii KSM-K16]
Length = 261
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEAL--FHSGAVSERDRGNPRRYDWARSART 118
++A +Y G + G Q PG +T++ ++E AL H GA R S RT
Sbjct: 3 RMACKLSYDGTAFAGYQVQPGKRTVQSEVERALQEIHKGA----------RVPVVASGRT 52
Query: 119 DKGVSAVGQVVS--GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
D GV A GQV+ I P V LN++LP I + V F+A+ + Y
Sbjct: 53 DAGVHACGQVLHFDTELTIAPERWVSALNTHLPDDIVVTNAAMVEPDFHARYGAQAKEYR 112
Query: 177 YLL 179
Y +
Sbjct: 113 YYI 115
>gi|297201758|ref|ZP_06919155.1| tRNA pseudouridine synthase A [Streptomyces sviceus ATCC 29083]
gi|197710867|gb|EDY54901.1| tRNA pseudouridine synthase A [Streptomyces sviceus ATCC 29083]
Length = 289
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAK-TIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
++ + +Y G + G K G + T++G++E+AL R Y+ + RTD
Sbjct: 11 RVRLDLSYDGSDFSGWAKQAGGRRTVQGEIEDAL------RTVTRSKDVTYELTVAGRTD 64
Query: 120 KGVSAVGQVVS-----GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
GV A GQV G + L++RL LP +R++ + A FNA+ RR
Sbjct: 65 AGVHARGQVAHVDLPEGLWAEHRDKLLKRLAGRLPKDVRVWSLREAPAGFNARFAALWRR 124
Query: 175 YVY 177
YVY
Sbjct: 125 YVY 127
>gi|340754265|ref|ZP_08691027.1| tRNA pseudouridine synthase A [Fusobacterium sp. 2_1_31]
gi|340566576|gb|EEO38835.2| tRNA pseudouridine synthase A [Fusobacterium sp. 2_1_31]
Length = 248
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Query: 56 LCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
L +R+ I I F Y G Y G Q+ P +T++G++E+ L V++ D + +
Sbjct: 2 LMERKNIKIEFRYDGSRYYGFQRQPNKETVQGEIEKIL---KIVTKED------INLISA 52
Query: 116 ARTDKGVSAVGQVVSGRFCIDPPGLVER----LNSNLPTQIRIFGYKRVTASFNAKKFCD 171
RTD+GV A QV F VE+ L LP I I + V FNA+
Sbjct: 53 GRTDRGVHANHQV--SNFYTSSTIPVEKYKYLLTRALPKDIDILSVEEVDEKFNARHDAK 110
Query: 172 QRRYVYLL 179
R YVY++
Sbjct: 111 MREYVYII 118
>gi|167948002|ref|ZP_02535076.1| tRNA pseudouridine synthase A [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 201
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 52 TKRQLC---KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPR 108
T R C + KIA+ Y G G+ G QK A++++ DLE AL R P
Sbjct: 8 TVRPFCCGIDKMKIALGVEYDGSGFNGWQKQSHARSVQEDLEAAL-------SRVADQPV 60
Query: 109 RYDWARSARTDKGVSAVGQVVSGRFCID--PPGLVERLNSNLPTQIRIFGYKRVTASFNA 166
R A RTD GV GQVV + P V N NLP + + ++V F+A
Sbjct: 61 RVHCA--GRTDTGVHGTGQVVHFETTAERPPRAWVLGSNVNLPNDVSVSWARQVADDFHA 118
Query: 167 KKFCDQRRYVYLL 179
+ R Y YL+
Sbjct: 119 RFSATGRHYRYLI 131
>gi|71906507|ref|YP_284094.1| tRNA pseudouridine synthase A [Dechloromonas aromatica RCB]
gi|123774503|sp|Q47HQ7.1|TRUA_DECAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|71846128|gb|AAZ45624.1| tRNA pseudouridine synthase [Dechloromonas aromatica RCB]
Length = 262
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++A+ YCG G+ G Q G T++ LE AL G V+ G + RTD
Sbjct: 2 RVALGIEYCGTGFHGWQSQAGGGTVQDALEAAL---GEVAGVPVGV------LCAGRTDA 52
Query: 121 GVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A QV +D P V +NS+LP + + + V F+A+ RRY YL
Sbjct: 53 GVHATHQVAHFDAPVDRPLTAWVRGVNSHLPEGVAVRWAQPVAEDFHARFSARGRRYRYL 112
Query: 179 L 179
L
Sbjct: 113 L 113
>gi|320591696|gb|EFX04135.1| pseudouridylate synthase 3 [Grosmannia clavigera kw1407]
Length = 522
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 14/156 (8%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGA--KTIEGDLEEALFHSGAV-----SERDRGNPRRYDW 112
R IA+ AY G Y G + P TIE +L +AL + V + D + R ++
Sbjct: 58 RFIALKLAYLGKRYGGFEYQPSGALPTIEEELWKALTKACLVFPAPGASADEVDLVRCEY 117
Query: 113 ARSARTDKGVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGY-KRVTASFNAKKFC 170
++ RTD+GVSA GQVV+ R + + + LN LP IR+ + A F+A+ C
Sbjct: 118 SKCGRTDRGVSAFGQVVALRVRSNKRAVYAKVLNRLLPPDIRVLAWCATPPADFSARFSC 177
Query: 171 DQRRYVYLL--PVFALDSSSHRDRESVMASLGSGNE 204
+R+Y Y P + + S R +S GS ++
Sbjct: 178 RERQYRYFFTQPAYFTEDGS---RPGPTSSAGSASQ 210
>gi|449544039|gb|EMD35013.1| hypothetical protein CERSUDRAFT_85755 [Ceriporiopsis subvermispora
B]
Length = 519
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 59 RRKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
RRKIA+ F+Y G Y G+ QK P T+EG L EAL H+ + ++ + W +
Sbjct: 50 RRKIALRFSYNGGEYGGLEAQKIPTPLPTVEGVLYEALVHTKLIDPKEGMD--GCGWEKC 107
Query: 116 ARTDKGVSAVGQVVS 130
RTDKGVSA GQV+S
Sbjct: 108 GRTDKGVSAAGQVIS 122
>gi|367000836|ref|XP_003685153.1| hypothetical protein TPHA_0D00760 [Tetrapisispora phaffii CBS 4417]
gi|357523451|emb|CCE62719.1| hypothetical protein TPHA_0D00760 [Tetrapisispora phaffii CBS 4417]
Length = 434
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 23/152 (15%)
Query: 59 RRKIAIFFAYCGVGYQGM----QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
+R +A+ F Y G Y G+ K P TIEG L EA+ + NP+ + ++R
Sbjct: 86 KRHVALKFCYLGWDYNGLALQKDKTP-LPTIEGILLEAMKKCKFIPSM---NPKDFKFSR 141
Query: 115 SARTDKGVSAVGQVVS--GRFCIDPPGLVER------------LNSNLPTQIRIFGY-KR 159
RTDKGVSA+ Q++S R + P V+ LN LP IRI
Sbjct: 142 CGRTDKGVSALNQIISLDMRSELPPAEQVDANFDHKEINYTAILNQILPPAIRITAVCLN 201
Query: 160 VTASFNAKKFCDQRRYVYLLPVFALDSSSHRD 191
F+A+ C R Y Y + LD + R+
Sbjct: 202 PPKDFDARFNCISRHYKYFFKLDNLDITLMRE 233
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 16/119 (13%)
Query: 351 KHYVGSHNFHNFTTRTKAED-PSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIR 409
KH+ G ++F NF ++ + R I SF V D +++ +F+ HQ+R
Sbjct: 236 KHFEGENDFRNFCKLDGSKQIKNYERTIFSFDISKVKE----DIYCFDIIASAFLWHQVR 291
Query: 410 KMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAP------EVGLYLDECIFASYNKKW 462
M+ + V + P S+++ L DVN P P + L L +C ++ + KW
Sbjct: 292 YMVAILFLVGQKLEPSSIVKDLL--DVN-KYPRKPIYDMAADFPLVLYDCNYS--DMKW 345
>gi|158298322|ref|XP_318500.4| AGAP010807-PA [Anopheles gambiae str. PEST]
gi|157014345|gb|EAA13705.4| AGAP010807-PA [Anopheles gambiae str. PEST]
Length = 485
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
C +R I + F Y G YQG + +TIE + AL + R+ N + R
Sbjct: 71 CFKRHILLRFYYLGWDYQGFAAQEDSIETIEHHMFAALKKVCLIESRETSN-----YNRC 125
Query: 116 ARTDKGVSAVGQVVS----GRFC----IDPPGLVER------LNSNLPTQIRIFGYK-RV 160
RTDKGVSA QV+S +F +D L LN LP +IR + V
Sbjct: 126 GRTDKGVSAFHQVISLDVRSKFAPELQLDANNLTNELDYCAMLNRVLPEEIRCLAWMPMV 185
Query: 161 TASFNAKKFCDQRRYVYLLP 180
+++A+ C R Y Y P
Sbjct: 186 NPAYSARFDCRSRTYRYFFP 205
>gi|374628788|ref|ZP_09701173.1| tRNA pseudouridine synthase A [Methanoplanus limicola DSM 2279]
gi|373906901|gb|EHQ35005.1| tRNA pseudouridine synthase A [Methanoplanus limicola DSM 2279]
Length = 260
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
KIA Y G + G Q+ +T+EG+ A G + +R ++ S RTD+
Sbjct: 2 KIAFKLGYFGDNFHGSQQQSNRRTVEGEFITACIDLGLIRDRKSSG-----FSISGRTDR 56
Query: 121 GVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
GV A Q+ S F P V +N LP I F Y V S+N + R+Y Y
Sbjct: 57 GVHARCQICS-FFTDHPERAVFAINEKLPGDIWCFAYAEVDDSYNPRYDVFSRKYRYYFY 115
Query: 181 VFALDSSS 188
LD S
Sbjct: 116 EEGLDHES 123
>gi|312199990|ref|YP_004020051.1| tRNA pseudouridine synthase A [Frankia sp. EuI1c]
gi|311231326|gb|ADP84181.1| tRNA pseudouridine synthase A [Frankia sp. EuI1c]
Length = 297
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I AY G + G + PG +T++GD+E+AL + + RTD
Sbjct: 30 RLRIDLAYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPA--------VRLTVAGRTDA 81
Query: 121 GVSAVGQVVSGRFCIDPP------GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
GV A QV +D P GL RLN L +RI G F+A+ RR
Sbjct: 82 GVHAARQVAH----VDIPDEVPLGGLARRLNGVLDRAVRILGIGPAPVGFDARFSALSRR 137
Query: 175 YVY 177
Y Y
Sbjct: 138 YNY 140
>gi|309802980|ref|ZP_07697081.1| tRNA pseudouridine synthase A [Bifidobacterium dentium JCVIHMP022]
gi|308220447|gb|EFO76758.1| tRNA pseudouridine synthase A [Bifidobacterium dentium JCVIHMP022]
Length = 302
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I AY G G+ G K P +T++G++E L V D G P R A RTD
Sbjct: 2 RLRIDLAYDGGGFFGWAKQPDRRTVQGEIERILHTVLRVPVDDAGEPLRLTVA--GRTDT 59
Query: 121 GVSAVGQV--------VSGRFCID----PP--GLVERLNSNLPTQIRIFGYKRVTASFNA 166
GV A QV + R C+ PP L RL LP I I G F+A
Sbjct: 60 GVHASHQVCHLDVSETILAR-CVGHMDVPPVVALTRRLQRMLPNDITIHGINEAPQGFDA 118
Query: 167 KKFCDQRRYVY 177
+ +R YVY
Sbjct: 119 RFSALERTYVY 129
>gi|242277723|ref|YP_002989852.1| tRNA pseudouridine synthase A [Desulfovibrio salexigens DSM 2638]
gi|259550311|sp|C6BW69.1|TRUA_DESAD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|242120617|gb|ACS78313.1| tRNA pseudouridine synthase A [Desulfovibrio salexigens DSM 2638]
Length = 271
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
++I + AY G + G Q P +T++GDLE+A+ + R G S RTD
Sbjct: 2 QRIKLIIAYDGTNFCGWQLQPKLRTVQGDLEKAITRITGTTVRVHG---------SGRTD 52
Query: 120 KGVSAVGQVVSGRF--CIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A+GQV C LNS LP + I + V+ F+++ ++ Y Y
Sbjct: 53 SGVHALGQVAHFDVDSCFASVKWQRALNSLLPDDVTILDAQLVSPEFHSRYSAIRKTYTY 112
Query: 178 LL 179
L
Sbjct: 113 TL 114
>gi|328350038|emb|CCA36438.1| pseudouridylate synthase [Komagataella pastoris CBS 7435]
Length = 422
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 68/149 (45%), Gaps = 21/149 (14%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
R+IA+ F+Y G YQG+ A TIE + EAL + NP ++R
Sbjct: 48 RQIALKFSYLGWNYQGLAVQREATDLPTIEFKILEALRQCRMIPSL---NPIDCAFSRCG 104
Query: 117 RTDKGVSAVGQVV--SGRFCIDPPGL------------VERLNSNLPTQIRIFGY-KRVT 161
RTDKGVSA+ QV+ + R + P L + LN LP+ IRI G R
Sbjct: 105 RTDKGVSAMNQVIGLNVRSRLTPEELESPENDIKELDYINILNQLLPSDIRIHGVCLRPP 164
Query: 162 ASFNAKKFCDQRRYVYLLPVFALDSSSHR 190
F+A+ C R Y Y+ LD S +
Sbjct: 165 KGFDARFSCRGRHYKYVFQDEGLDLESMK 193
>gi|408355518|ref|YP_006844049.1| tRNA pseudouridine synthase A [Amphibacillus xylanus NBRC 15112]
gi|407726289|dbj|BAM46287.1| tRNA pseudouridine synthase A [Amphibacillus xylanus NBRC 15112]
Length = 248
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R +AI +Y G Y G Q P TI+ +E AL ++ +G P + S RTD
Sbjct: 2 RYLAII-SYDGSNYSGYQIQPNQLTIQAVIEAAL------TKMHKGEPVKI--TASGRTD 52
Query: 120 KGVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A GQV+ +D P + LNS LP I + K+V+ +F+A+ ++ Y+Y
Sbjct: 53 AGVHAYGQVIHFDSELDIPESNWKKALNSLLPGDIVVLDVKQVSENFHARFDAIKKTYIY 112
Query: 178 LL 179
+
Sbjct: 113 TI 114
>gi|422316081|ref|ZP_16397482.1| tRNA pseudouridine synthase A [Fusobacterium periodonticum D10]
gi|404591541|gb|EKA93666.1| tRNA pseudouridine synthase A [Fusobacterium periodonticum D10]
Length = 241
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 55 QLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWAR 114
L R+ + I F Y G GY G Q+ P T++G++E+ L V++ D +
Sbjct: 1 MLMGRKNVKIEFRYDGSGYYGFQRQPDKVTVQGEIEKIL---KIVTKED------INLIS 51
Query: 115 SARTDKGVSAVGQVVSGRFCIDPPGLVER----LNSNLPTQIRIFGYKRVTASFNAKKFC 170
+ RTD+GV A QV F VE+ L LP I I + V FNA+
Sbjct: 52 AGRTDRGVHANHQV--SNFYTSSTIPVEKYKYLLTRALPKDIDILSVEEVDEKFNARHDA 109
Query: 171 DQRRYVYLL 179
R YVY++
Sbjct: 110 KMREYVYII 118
>gi|344228480|gb|EGV60366.1| hypothetical protein CANTEDRAFT_127546 [Candida tenuis ATCC 10573]
Length = 415
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 21/144 (14%)
Query: 60 RKIAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
R +AI FAY G Y G+ ++ T+E + +AL + V + P D++R
Sbjct: 52 RFVAIRFAYLGWNYNGLAFQFEDTPLPTVEEQILKALATAKLVKD---AEPGCCDFSRCG 108
Query: 117 RTDKGVSAVGQVVSGR----FCIDPPGL----------VERLNSNLPTQIRIFGYK-RVT 161
RTDKGVSA+ QV+S R F + L + LNS LP IR+ R
Sbjct: 109 RTDKGVSAMNQVISLRVRSDFSPEDQQLQSNDDKEIPYIFILNSILPPDIRVTAISLRPP 168
Query: 162 ASFNAKKFCDQRRYVYLLPVFALD 185
F+A+ C+ R Y YL+ LD
Sbjct: 169 PKFDARFSCEYRHYRYLIAKEGLD 192
>gi|212716584|ref|ZP_03324712.1| hypothetical protein BIFCAT_01513 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212660288|gb|EEB20863.1| hypothetical protein BIFCAT_01513 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 306
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I AY G + G K P +T++G++E L V E D P R A RTD
Sbjct: 6 RLRIDLAYDGTDFYGWAKQPDMRTVQGEIERVLHTILRVPEGDDNEPLRLTVA--GRTDT 63
Query: 121 GVSAVGQVVS------------GRFCIDP-PGLVERLNSNLPTQIRIFGYKRVTASFNAK 167
GV A QV G ++P L RL LP I I K F+A+
Sbjct: 64 GVHASHQVCHLDINEETLARCVGHMQVEPVMALTRRLQRMLPNDIAIHSIKEAPEGFDAR 123
Query: 168 KFCDQRRYVY 177
+R YVY
Sbjct: 124 FSALERTYVY 133
>gi|18977290|ref|NP_578647.1| tRNA pseudouridine synthase A [Pyrococcus furiosus DSM 3638]
gi|397651422|ref|YP_006492003.1| tRNA pseudouridine synthase A [Pyrococcus furiosus COM1]
gi|24638312|sp|Q8U2C1.1|TRUA_PYRFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|18892961|gb|AAL81042.1| putative tRNA pseudouridine synthase a [Pyrococcus furiosus DSM
3638]
gi|393189013|gb|AFN03711.1| tRNA pseudouridine synthase A [Pyrococcus furiosus COM1]
Length = 266
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 12/141 (8%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++A+ AY G + G Q+ P +TIEG++ AL +G E ++ ++RTD+
Sbjct: 2 RVALKIAYDGTKFHGFQRQPNVRTIEGEILRALKDAGIEFE---------NFKSASRTDR 52
Query: 121 GVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
GVSA G V++ D LNS + + + I+G V F+ + + + + Y Y LP
Sbjct: 53 GVSARGNVIALSTEDDRIKNPMVLNSRM-SDVWIWGIAEVPEDFHPRFWANTKVYRYYLP 111
Query: 181 VFALDSSSHRDRESVMASLGS 201
+L + + +E + LG+
Sbjct: 112 --SLGMNIKKMKECSLLFLGT 130
>gi|251772807|gb|EES53368.1| Pseudouridylate synthase [Leptospirillum ferrodiazotrophum]
Length = 294
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 65/157 (41%), Gaps = 13/157 (8%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R+IA+ AY G + G Q P T++G L EAL + G S RTD
Sbjct: 12 RRIALLLAYDGRDFSGWQVQPNRWTVQGTLGEAL---ATLCRAPVGV------TGSGRTD 62
Query: 120 KGVSAVGQVVSGR----FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
GVSA GQV F I L LN+ LP +R+ + V++SF+A+ + Y
Sbjct: 63 AGVSAWGQVAHADLPEGFSIPVDRLPRILNTRLPGSLRVLDCRSVSSSFHARHSARGKIY 122
Query: 176 VYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECS 212
Y+ S H A L L + E S
Sbjct: 123 RYVFRHLPASLSHHPLATPFSAPLPPNFFLPRAREAS 159
>gi|254565011|ref|XP_002489616.1| Non-essential tRNA:pseudouridine synthase [Komagataella pastoris
GS115]
gi|238029412|emb|CAY67335.1| Non-essential tRNA:pseudouridine synthase [Komagataella pastoris
GS115]
Length = 438
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 68/149 (45%), Gaps = 21/149 (14%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
R+IA+ F+Y G YQG+ A TIE + EAL + NP ++R
Sbjct: 64 RQIALKFSYLGWNYQGLAVQREATDLPTIEFKILEALRQCRMIPSL---NPIDCAFSRCG 120
Query: 117 RTDKGVSAVGQVV--SGRFCIDPPGL------------VERLNSNLPTQIRIFGY-KRVT 161
RTDKGVSA+ QV+ + R + P L + LN LP+ IRI G R
Sbjct: 121 RTDKGVSAMNQVIGLNVRSRLTPEELESPENDIKELDYINILNQLLPSDIRIHGVCLRPP 180
Query: 162 ASFNAKKFCDQRRYVYLLPVFALDSSSHR 190
F+A+ C R Y Y+ LD S +
Sbjct: 181 KGFDARFSCRGRHYKYVFQDEGLDLESMK 209
>gi|436840540|ref|YP_007324918.1| tRNA pseudouridine synthase A [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
gi|432169446|emb|CCO22814.1| tRNA pseudouridine synthase A [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
Length = 276
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 21/137 (15%)
Query: 51 TTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRY 110
++++ + KR K+ + AY G + G Q P +T++G+LE+A+ H R G
Sbjct: 4 SSRKTVVKRLKLTL--AYDGTDFCGWQFQPNLRTVQGELEKAISHITGFPVRVHG----- 56
Query: 111 DWARSARTDKGVSAVGQVVSGRFCIDPPG------LVERLNSNLPTQIRIFGYKRVTASF 164
S RTD GV A GQ+V +D P + LNS LP + + V+ F
Sbjct: 57 ----SGRTDSGVHARGQIVH----LDLPDNRTSVPWQKSLNSLLPDDVTVLDCAYVSGDF 108
Query: 165 NAKKFCDQRRYVYLLPV 181
+++ ++RY Y + V
Sbjct: 109 HSRFSTVRKRYSYSIWV 125
>gi|429204100|ref|ZP_19195393.1| tRNA pseudouridine synthase [Lactobacillus saerimneri 30a]
gi|428147599|gb|EKW99822.1| tRNA pseudouridine synthase [Lactobacillus saerimneri 30a]
Length = 253
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 56 LCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+ +R K+ I AY G + G QK P +T++ +E+AL E S
Sbjct: 1 MTQRYKVTI--AYDGTNFAGFQKQPQQRTVQSVIEDALNKMNKTDE-------HIFIVGS 51
Query: 116 ARTDKGVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQR 173
RTD GV A+ QV+ F D P G+ LNS LP + + + V SF+A+ +
Sbjct: 52 GRTDAGVHALAQVIHFDFPHDIPALGMKRGLNSMLPLDLEVKDCEIVDDSFHARFSTHGK 111
Query: 174 RYVY 177
RY+Y
Sbjct: 112 RYMY 115
>gi|86606117|ref|YP_474880.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-3-3Ab]
gi|86554659|gb|ABC99617.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-3-3Ab]
Length = 287
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNP-RRYDWARSART 118
R+IA+ Y G G++G Q+ G +T++G LEEA+ G+P Y + RT
Sbjct: 4 RRIALKIQYLGSGFRGWQRQAGHRTVQGVLEEAI-------ALRAGHPVALYG---AGRT 53
Query: 119 DKGVSAVGQVV-----SGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQR 173
D GV A GQV SG I P LN LP + + +V ++A+ R
Sbjct: 54 DTGVHASGQVAHFDTTSG---IPPTEWARVLNDCLPEDVVVLASAQVPDFWHARFSARWR 110
Query: 174 RYVYLL 179
RY YL+
Sbjct: 111 RYRYLI 116
>gi|379724643|ref|YP_005316774.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus 3016]
gi|378573315|gb|AFC33625.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus 3016]
Length = 258
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEA-LFHSGAVSERDRGNPRRYDWARSART 118
R IA+ +Y G Y G Q P T++ +LE+A LF +G + S RT
Sbjct: 2 RNIAMKVSYDGTAYHGFQTQPELVTVQDELEQAILFLTG----------EKVKLTSSGRT 51
Query: 119 DKGVSAVGQVVS----GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
D GV A GQV++ R +D +NS LP I ++ + V A F+A++ ++
Sbjct: 52 DAGVHAKGQVINLQTEARIPVDR--WCHAMNSRLPDDIVVWHAEEVPAEFHARRSAKRKT 109
Query: 175 YVYLL 179
Y Y +
Sbjct: 110 YRYTI 114
>gi|386727392|ref|YP_006193718.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus K02]
gi|384094517|gb|AFH65953.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus K02]
Length = 258
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEA-LFHSGAVSERDRGNPRRYDWARSART 118
R IA+ +Y G Y G Q P T++ +LE+A LF +G + S RT
Sbjct: 2 RNIAMKVSYDGTAYHGFQTQPELVTVQDELEQAILFLTG----------EKVKLTSSGRT 51
Query: 119 DKGVSAVGQVVS----GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
D GV A GQV++ R +D +NS LP I ++ + V A F+A++ ++
Sbjct: 52 DAGVHAKGQVINLQTEARIPVDR--WCHAMNSRLPDDIVVWHAEEVPAEFHARRSAKRKT 109
Query: 175 YVYLL 179
Y Y +
Sbjct: 110 YRYTI 114
>gi|337751700|ref|YP_004645862.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus KNP414]
gi|336302889|gb|AEI45992.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus KNP414]
Length = 258
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEA-LFHSGAVSERDRGNPRRYDWARSART 118
R IA+ +Y G Y G Q P T++ +LE+A LF +G + S RT
Sbjct: 2 RNIAMKVSYDGTAYHGFQTQPELVTVQDELEQAILFLTG----------EKVKLTSSGRT 51
Query: 119 DKGVSAVGQVVS----GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
D GV A GQV++ R +D +NS LP I ++ + V A F+A++ ++
Sbjct: 52 DAGVHAKGQVINLQTEARIPVDR--WCHAMNSRLPDDIVVWHAEEVPAEFHARRSAKRKT 109
Query: 175 YVYLL 179
Y Y +
Sbjct: 110 YRYTI 114
>gi|158319577|ref|YP_001512084.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs]
gi|158139776|gb|ABW18088.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs]
Length = 248
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R I I Y G Y G Q P A TI+ ++ +AL G S RTD
Sbjct: 2 RNIMIEIEYDGSNYSGWQVQPNAITIQEEIMKALKKLEGKDVVIHG---------SGRTD 52
Query: 120 KGVSAVGQVVSGRFCIDPPGLVERL----NSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
GV A GQV + F ++ VERL NSNLP I I K V F+A+ +RY
Sbjct: 53 AGVHAYGQVAT--FLMERNIPVERLPLAMNSNLPKDITIIDAKEVPMDFHARYSAIGKRY 110
Query: 176 VY 177
+Y
Sbjct: 111 IY 112
>gi|150020829|ref|YP_001306183.1| tRNA pseudouridine synthase ACD [Thermosipho melanesiensis BI429]
gi|166229846|sp|A6LLJ7.1|TRUA_THEM4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|149793350|gb|ABR30798.1| tRNA pseudouridine synthase A [Thermosipho melanesiensis BI429]
Length = 244
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
++ AI F+Y G + G Q P +T++G+LE+AL +R R + RTD
Sbjct: 2 KRFAIEFSYDGTNFFGYQGQPNVRTVQGELEKAL---------ERIFKERIFTQGAGRTD 52
Query: 120 KGVSAVGQVVSGRFCIDPPGLVE---RLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
GV A GQV + ID ++ LN+NLP I + V +FN + +R Y
Sbjct: 53 AGVHANGQVAAFNCPIDRLAAIDIKNALNANLPEDIYVKKAWEVEKNFNPRFRAKKRIYH 112
Query: 177 YLL 179
YL+
Sbjct: 113 YLV 115
>gi|345864730|ref|ZP_08816927.1| tRNA pseudouridine synthase A [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345124114|gb|EGW53997.1| tRNA pseudouridine synthase A [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 253
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
KIA+ Y G G+ G QK A++++ DLE AL R P R A RTD
Sbjct: 2 KIALGVEYDGSGFNGWQKQSHARSVQEDLEAAL-------SRVADQPVRVHCA--GRTDT 52
Query: 121 GVSAVGQVVSGRFCID--PPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV GQVV + P V N NLP + + ++V F+A+ R Y YL
Sbjct: 53 GVHGTGQVVHFETTAERPPRAWVLGSNVNLPNDVSVSWARQVADDFHARFSATGRHYRYL 112
Query: 179 L 179
+
Sbjct: 113 I 113
>gi|448498802|ref|ZP_21611014.1| tRNA pseudouridine synthase A [Halorubrum coriense DSM 10284]
gi|445698168|gb|ELZ50218.1| tRNA pseudouridine synthase A [Halorubrum coriense DSM 10284]
Length = 313
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 60/140 (42%), Gaps = 18/140 (12%)
Query: 44 AAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERD 103
A+ G D+ T+ A AY G Y G Q+ P A T+ L AL G V D
Sbjct: 4 ASGGTDTVTR---------AFRVAYDGRAYAGFQRQPHAHTVADALLGALADHGLVDSGD 54
Query: 104 ---RGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKR 159
P Y A + RTD GVSAV Q V+ P L R N +LP +R +
Sbjct: 55 GPTHATPPGY--AAAGRTDAGVSAVSQTVA---FEAPTWLTPRAFNGHLPGSVRAWAAAD 109
Query: 160 VTASFNAKKFCDQRRYVYLL 179
V + F+A +R Y Y L
Sbjct: 110 VASGFHATHDAVRRTYRYHL 129
>gi|345879265|ref|ZP_08830931.1| hypothetical protein Rifp1Sym_dy00030 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344223708|gb|EGV50145.1| hypothetical protein Rifp1Sym_dy00030 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 298
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 60/135 (44%), Gaps = 14/135 (10%)
Query: 50 STTKRQLC---KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGN 106
+ T R C + KIA+ Y G G+ G QK A++++ DLE AL R
Sbjct: 33 AHTVRPFCCGIDKMKIALGVEYDGSGFNGWQKQSHARSVQEDLEAAL-------SRVADQ 85
Query: 107 PRRYDWARSARTDKGVSAVGQVVSGRFCID--PPGLVERLNSNLPTQIRIFGYKRVTASF 164
P R A RTD GV GQVV + P V N NLP + + ++V F
Sbjct: 86 PVRVHCA--GRTDTGVHGTGQVVHFETTAERPPRAWVLGSNVNLPNDVSVSWARQVADDF 143
Query: 165 NAKKFCDQRRYVYLL 179
+A+ R Y YL+
Sbjct: 144 HARFSATGRHYRYLI 158
>gi|403382898|ref|ZP_10924955.1| tRNA pseudouridine synthase A [Paenibacillus sp. JC66]
Length = 259
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R I + +Y G Y G Q P A T++G+LE A+FH S + S RTD
Sbjct: 7 RNIKLTVSYDGTQYSGFQIQPQANTVQGELERAVFHLTGQSVK---------LTSSGRTD 57
Query: 120 KGVSAVGQVVSGRFCIDPPGLVER----LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
GV A QVV+ F ++ ++R LNS LP I + + V F+A++ + Y
Sbjct: 58 AGVHARCQVVN--FEVNSSIPIDRWCLALNSRLPKDIVVHTAEEVPMEFHARRSAVSKTY 115
Query: 176 VY 177
Y
Sbjct: 116 RY 117
>gi|217077259|ref|YP_002334977.1| tRNA pseudouridine synthase ACD [Thermosipho africanus TCF52B]
gi|226708660|sp|B7IHS2.1|TRUA_THEAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|217037114|gb|ACJ75636.1| tRNA pseudouridine synthase A [Thermosipho africanus TCF52B]
Length = 244
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
++ AI FAY G + G Q P +T++GDLE+AL +R R + RTD
Sbjct: 2 KRFAIEFAYDGTKFFGYQGQPNVRTVQGDLEDAL---------ERIFKERIYTQAAGRTD 52
Query: 120 KGVSAVGQVVSGRFCID---PPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
GV A GQV + I+ + LN+NLP I + V SFN + +R Y
Sbjct: 53 AGVHANGQVAAFNCPIERLTETDIKNALNANLPDDIYVKKAWVVDKSFNPRFAATKRIYH 112
Query: 177 YLL 179
Y +
Sbjct: 113 YFI 115
>gi|373463259|ref|ZP_09554886.1| tRNA pseudouridine synthase A [Lactobacillus kisonensis F0435]
gi|371764947|gb|EHO53312.1| tRNA pseudouridine synthase A [Lactobacillus kisonensis F0435]
Length = 265
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
R K+ I AY G + G Q+ P +TIEG L + + +++ + Y S RT
Sbjct: 3 RYKVTI--AYDGTLFSGFQRQPNKRTIEGVLTQKV---NLMAKNPQLPIVVYG---SGRT 54
Query: 119 DKGVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
D GV A GQVV F D P + LNS LP + + + V+ +F+A+ +RY
Sbjct: 55 DAGVHAFGQVVHFDFPFDLPTEAIYRGLNSMLPLDMEVMKVETVSPNFHARYDVSGKRYF 114
Query: 177 Y 177
Y
Sbjct: 115 Y 115
>gi|226357340|ref|YP_002787080.1| tRNA-pseudouridine synthase I [Deinococcus deserti VCD115]
gi|226319330|gb|ACO47326.1| putative tRNA-pseudouridine synthase I (tRNA pseudouridylate
synthase I) (tRNA-uridine isomerase) [Deinococcus
deserti VCD115]
Length = 266
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 13/130 (10%)
Query: 54 RQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWA 113
R R++ + A+ G Y G Q P A +++ L A G+ + R
Sbjct: 12 RPPAGYRRLRLTLAWDGGPYAGWQSQPNAPSVQDTLHAAFGRLGSGAFRP---------V 62
Query: 114 RSARTDKGVSA----VGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKF 169
+ RTD GV A V V G F + P L LN+ LP + + A F+A+
Sbjct: 63 AAGRTDAGVHAEAMPVHVDVPGGFRVPAPKLARALNAWLPPSVSVLEAFDAPAGFHARFS 122
Query: 170 CDQRRYVYLL 179
C +RRYVY L
Sbjct: 123 CTERRYVYRL 132
>gi|419759835|ref|ZP_14286120.1| tRNA pseudouridine synthase ACD [Thermosipho africanus H17ap60334]
gi|407514874|gb|EKF49660.1| tRNA pseudouridine synthase ACD [Thermosipho africanus H17ap60334]
Length = 244
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
++ AI FAY G + G Q P +T++GDLE+AL +R R + RTD
Sbjct: 2 KRFAIEFAYDGTKFFGYQGQPNVRTVQGDLEDAL---------ERIFKERIYTQAAGRTD 52
Query: 120 KGVSAVGQVVSGRFCID---PPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
GV A GQV + I+ + LN+NLP I + V SFN + +R Y
Sbjct: 53 AGVHANGQVAAFNCPIERLTETDIKNALNANLPDDIYVKKAWIVDKSFNPRFAATKRIYH 112
Query: 177 YLL 179
Y +
Sbjct: 113 YFI 115
>gi|420265949|ref|ZP_14768461.1| tRNA pseudouridine synthase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394426812|gb|EJE99604.1| tRNA pseudouridine synthase [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 250
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123
I AY G + G Q P +T++ LE+A+ E S RTD GV
Sbjct: 2 ITLAYDGTNFAGFQSQPNQRTVQDVLEKAVNKMSTAKEFVH-------IFGSGRTDAGVH 54
Query: 124 AVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
A GQ+V D P G+V LNS LP +++ K V+ F+A+ +RY+Y
Sbjct: 55 AFGQIVHFDLENDIPAQGIVNGLNSMLPLDMQVVDAKIVSKEFHARFTAHGKRYMY 110
>gi|242398608|ref|YP_002994032.1| tRNA pseudouridine synthase A [Thermococcus sibiricus MM 739]
gi|259550478|sp|C6A238.1|TRUA_THESM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|242265001|gb|ACS89683.1| tRNA pseudouridine synthase A [Thermococcus sibiricus MM 739]
Length = 266
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+IA+ AY G + G Q+ P +T+EG+L + L G + + N + ++RTD+
Sbjct: 2 RIALKIAYDGTKFYGFQRQPDLRTVEGELIKVLKKLGIIEDVKEAN-----FKGASRTDR 56
Query: 121 GVSAVGQVVSGRFCIDPPGLVER--LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GVSA+G V++ F P L E LN +L I I G V F+ + + + Y Y
Sbjct: 57 GVSALGNVIA--FNTAKPELAEARILNHHL-RDIWILGKAEVPEDFHPRFWAKNKIYRYY 113
Query: 179 L 179
L
Sbjct: 114 L 114
>gi|193666867|ref|XP_001946781.1| PREDICTED: tRNA pseudouridine synthase 3-like isoform 1
[Acyrthosiphon pisum]
gi|328702018|ref|XP_003241780.1| PREDICTED: tRNA pseudouridine synthase 3-like isoform 2
[Acyrthosiphon pisum]
Length = 402
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 57/135 (42%), Gaps = 15/135 (11%)
Query: 59 RRKIAIFFAYCGVGYQGM-QKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+R + Y G Y G ++ KTIE +L AL + R N + R R
Sbjct: 56 KRHVVFKILYLGWDYHGFATQDVSEKTIEYELFRALTICCLIESRQTSN-----YHRCGR 110
Query: 118 TDKGVSAVGQVVSGRFCIDPPG-------LVERLNSNLPTQIRIFGYKRVTASFNAKKFC 170
TDKGVS+ QV+S + G + LN LP IR+ + V F+A+ C
Sbjct: 111 TDKGVSSFSQVIS--LTVRSNGDDSEELPYCKMLNRLLPKDIRVVAWGPVKDDFSARFDC 168
Query: 171 DQRRYVYLLPVFALD 185
R Y Y P LD
Sbjct: 169 GSRTYKYWFPRGDLD 183
>gi|384564392|ref|ZP_10011496.1| pseudouridylate synthase I [Saccharomonospora glauca K62]
gi|384520246|gb|EIE97441.1| pseudouridylate synthase I [Saccharomonospora glauca K62]
Length = 308
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 59/139 (42%), Gaps = 32/139 (23%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS----A 116
++ I +Y G + G + P +T++G LEEAL R P A S
Sbjct: 21 RLRIDLSYDGTDFSGWARQPERRTVQGVLEEAL----------RKQPPGASLAGSIVVAG 70
Query: 117 RTDKGVSAVGQVV------------SGRFCIDPPGLVE------RLNSNLPTQIRIFGYK 158
RTD GV A+GQVV S + P GL + RLN LP +R+
Sbjct: 71 RTDAGVHALGQVVHADVVRLAGETRSRNMPVSPDGLPDLDWARHRLNRLLPADVRVLRIS 130
Query: 159 RVTASFNAKKFCDQRRYVY 177
R A F+A+ +R Y Y
Sbjct: 131 RAPAGFDARFSAAKRHYRY 149
>gi|431792517|ref|YP_007219422.1| pseudouridylate synthase I [Desulfitobacterium dichloroeliminans
LMG P-21439]
gi|430782743|gb|AGA68026.1| pseudouridylate synthase I [Desulfitobacterium dichloroeliminans
LMG P-21439]
Length = 269
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNP--GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSA 116
+R IA+ AY G Y G Q+ P T++G LE + V E N +
Sbjct: 10 QRNIALKIAYDGTHYHGFQRQPEFHGPTVQGSLESVW--AKLVEEVVTLN-------TAG 60
Query: 117 RTDKGVSAVGQVVSGRFCIDPPG--LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRR 174
RTD+GV A GQVV+ R P + + +NS LP IR+ + V SF+A+ +R
Sbjct: 61 RTDRGVHATGQVVNFRTAARIPAAKIPKAMNSLLPRDIRVVDAQEVADSFHARFSARWKR 120
Query: 175 YVY 177
Y Y
Sbjct: 121 YDY 123
>gi|241890020|ref|ZP_04777318.1| tRNA pseudouridine synthase A [Gemella haemolysans ATCC 10379]
gi|241863642|gb|EER68026.1| tRNA pseudouridine synthase A [Gemella haemolysans ATCC 10379]
Length = 265
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ + Y G Y G Q P TI+ ++E++L + ++ + R Y S RTD
Sbjct: 2 RVVLLCRYDGSNYHGFQIQPNNNTIQEEIEKSL------KKINKKDVRLY---MSGRTDS 52
Query: 121 GVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A GQV+ ++ P V+ LN+ +P IRI G + F+ + Q+ Y Y
Sbjct: 53 GVHAYGQVLHFDTDLNIPDEAWVKALNATIPKDIRIVGATSASEDFHVRYNSTQKTYYYK 112
Query: 179 LPV 181
L +
Sbjct: 113 LHI 115
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 350 LKHYVGSHNFHNFTTR-TKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQI 408
L++++G H+F +F ++ + ED Y ++ D ++N ++F E+ G F+ + +
Sbjct: 143 LQYFIGEHDFSSFCSKNSSVEDKVRTIYSLTMEKD-LINPNIVNF---EITGNGFLYNMV 198
Query: 409 RKMIGLAVAVVRNCAPQSLIETALQ-KDVNINVPTAPEVGLYLDECIF 455
R +IG V + ++ L+ K+ P A GLYL E ++
Sbjct: 199 RIIIGTIQNVAAGKYEANYVKEILEKKERQFAGPKADAAGLYLKEVLY 246
>gi|114567807|ref|YP_754961.1| pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|122317314|sp|Q0AUL4.1|TRUA_SYNWW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|114338742|gb|ABI69590.1| Pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 249
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+I + Y G Y G Q A T++ +LE+A++ R + R + RTD
Sbjct: 3 RIKLLLEYDGSNYHGFQLQKNANTVQAELEKAIY---------RLSGERATIVCAGRTDA 53
Query: 121 GVSAVGQVVSGRFCIDPPG--LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GV A GQVV+ C PG LNS LP I++ + A FN + ++ Y YL
Sbjct: 54 GVHAWGQVVAFDSCSTIPGDRWAYALNSQLPEDIQVLESQETRAEFNPRFDALKKCYGYL 113
Query: 179 L 179
+
Sbjct: 114 I 114
>gi|387592744|gb|EIJ87768.1| hypothetical protein NEQG_01840 [Nematocida parisii ERTm3]
gi|387595370|gb|EIJ92994.1| hypothetical protein NEPG_01949 [Nematocida parisii ERTm1]
Length = 326
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 28/141 (19%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRG---NPRRYDWARS- 115
R + + +Y G Y G PG T+E L +L + V E + G P + W +
Sbjct: 6 RNVLLKLSYNGQQYHGFAYQPGLPTVEHHLFLSLIKNKFV-EINNGLPIQPSTFVWPKEI 64
Query: 116 ------------ARTDKGVSAVGQVVSGRFCIDPPGLVER-------LNSNLPTQIRIFG 156
RTD GVSA Q +S I P E+ +N +LP IR+ G
Sbjct: 65 LASIALMKYYKCGRTDAGVSAAAQFIS----IHLPSNTEKDYPYDIMINQHLPNDIRVLG 120
Query: 157 YKRVTASFNAKKFCDQRRYVY 177
+ V F+A+ C R Y Y
Sbjct: 121 WMFVDKEFSARFTCISREYEY 141
>gi|340620098|ref|YP_004738552.1| tRNA pseudouridine synthase A [Zobellia galactanivorans]
gi|339734895|emb|CAZ98272.1| tRNA pseudouridine synthase A [Zobellia galactanivorans]
Length = 265
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 68 YCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQ 127
Y G Y G QK P KTIEG L + L A R + + RTD VSAV
Sbjct: 14 YLGFRYSGWQKQPKQKTIEGMLAKTLKFVLA--------DRSFKILGAGRTDAKVSAVN- 64
Query: 128 VVSGRFCIDPPGL------VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
++ +D GL + N NLP IR K V +FN + Q+ Y+YL
Sbjct: 65 -MAFELFVDDMGLGNLNEFLSFFNENLPPDIRALSIKEVDKAFNIIQDAKQKEYIYLF 121
>gi|317505831|ref|ZP_07963676.1| tRNA pseudouridine synthase [Segniliparus rugosus ATCC BAA-974]
gi|316255913|gb|EFV15138.1| tRNA pseudouridine synthase [Segniliparus rugosus ATCC BAA-974]
Length = 293
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 26/129 (20%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEA---LFHSGAVSERDRGNPRRYDWARSAR 117
++ + AY G + G + PG +T+ G +E A LF + A + R
Sbjct: 22 RLRLDIAYDGTEFSGWARQPGRRTVAGTIEAALGRLFQAPA------------QLTVAGR 69
Query: 118 TDKGVSAVGQV---------VSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
TD GV A GQV VSGR + P LV +L LP+ +R+ + V+ F+A+
Sbjct: 70 TDSGVHATGQVAHVDVSAELVSGR--LPPDKLVRKLARMLPSDVRVLAAREVSKQFDARF 127
Query: 169 FCDQRRYVY 177
+R Y Y
Sbjct: 128 SALRRHYRY 136
>gi|409723060|ref|ZP_11270412.1| tRNA pseudouridine synthase A, partial [Halococcus hamelinensis
100A6]
Length = 130
Score = 54.3 bits (129), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGV 122
A AY G Y G Q+ P T+E + +AL G + D + +A + RTD+ V
Sbjct: 3 AFRVAYDGRPYHGFQRQPTVPTVEDTMFDALRELGVL---DATADKPSGYAAAGRTDRRV 59
Query: 123 SAVGQVVSGRFCIDPPG-LVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLP 180
SAV Q V+ D P LV R LNS LP +R + + F+A R Y Y L
Sbjct: 60 SAVAQTVA----FDAPDWLVPRALNSELPESVRAWAHADAPPGFHATHDAASRTYTYHLH 115
Query: 181 VFALD 185
A D
Sbjct: 116 APAAD 120
>gi|119025367|ref|YP_909212.1| tRNA pseudouridine synthase A [Bifidobacterium adolescentis ATCC
15703]
gi|118764951|dbj|BAF39130.1| tRNA pseudouridine synthase A [Bifidobacterium adolescentis ATCC
15703]
Length = 306
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I AY G G+ G K P +T++G++E L V E D P R A RTD
Sbjct: 6 RLRIDLAYDGTGFYGWAKQPEIRTVQGEIERVLHTILRVPEGDPTEPLRLTVA--GRTDT 63
Query: 121 GVSAVGQVVS-------GRFCID----PP--GLVERLNSNLPTQIRIFGYKRVTASFNAK 167
GV A QV + C+ PP L RL LP I I G F+A+
Sbjct: 64 GVHASHQVCHLDVNEDVLKRCVGHMDVPPVIALTRRLQRMLPADIAIRGIAPAPDGFDAR 123
Query: 168 KFCDQRRYVY 177
+R YVY
Sbjct: 124 FSALERTYVY 133
>gi|289192063|ref|YP_003458004.1| tRNA pseudouridine synthase A [Methanocaldococcus sp. FS406-22]
gi|288938513|gb|ADC69268.1| tRNA pseudouridine synthase A [Methanocaldococcus sp. FS406-22]
Length = 262
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 12/125 (9%)
Query: 351 KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410
K +G+H+FHN + R K+++ S R I E +L +++G+SF+ + +RK
Sbjct: 124 KKMIGTHSFHNLSKRDKSKEKSPIRTIYDIKIS-----ENEFYLTIDIIGESFLWNMVRK 178
Query: 411 MIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDEC------IFASYN-KKWK 463
++G V R P I L ++ VPT P GL L E I+ +Y+ +K+K
Sbjct: 179 IVGALDLVGRGKKPVDWIGKLLDENHREGVPTFPPDGLILVEAKVDVDYIYDNYSIRKFK 238
Query: 464 DSHEE 468
+ EE
Sbjct: 239 EYWEE 243
>gi|365851847|ref|ZP_09392262.1| tRNA pseudouridine synthase A [Lactobacillus parafarraginis F0439]
gi|363715788|gb|EHL99211.1| tRNA pseudouridine synthase A [Lactobacillus parafarraginis F0439]
Length = 268
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 56 LCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
+ R KI F Y G + G Q+ PG +T+EG L + + +++ Y S
Sbjct: 4 ILIRYKIT--FIYDGTNFNGFQRQPGQRTVEGVLTQKV---NVMAKHPTPPIVVYG---S 55
Query: 116 ARTDKGVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQR 173
RTD GV A+ QV F D P + LNS LP + + ++V+ F+A+ +
Sbjct: 56 GRTDSGVHALAQVAHFDFPFDLPTTAIYRGLNSMLPLDMEVTKVEKVSDHFHARYDVSGK 115
Query: 174 RYVYLL 179
+Y+Y L
Sbjct: 116 KYLYRL 121
>gi|448722324|ref|ZP_21704861.1| tRNA pseudouridine synthase A [Halococcus hamelinensis 100A6]
gi|445789808|gb|EMA40486.1| tRNA pseudouridine synthase A [Halococcus hamelinensis 100A6]
Length = 267
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 63 AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSG---AVSERDRGNPRRYDWARSARTD 119
A AY G Y G Q+ P T+E + +AL G A +++ G +A + RTD
Sbjct: 3 AFRVAYDGRPYHGFQRQPTVPTVEDTMFDALRELGVLDATADKPSG------YAAAGRTD 56
Query: 120 KGVSAVGQVVSGRFCIDPP-GLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
+ VSAV Q V+ D P LV R LNS LP +R + + F+A R Y Y
Sbjct: 57 RRVSAVAQTVA----FDAPDWLVPRALNSELPESVRAWAHADAPPGFHATHDAASRTYTY 112
Query: 178 LLPVFALD 185
L A D
Sbjct: 113 HLHAPAAD 120
>gi|356527708|ref|XP_003532450.1| PREDICTED: tRNA pseudouridine synthase A-like [Glycine max]
Length = 404
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTI----EGDLEEALFHSGAVSERDRGNPRRYDWAR 114
R I +Y G + G QK PG T+ EG L + + +D+G P
Sbjct: 96 RTTFKIILSYHGGSFDGWQKQPGLNTVQSIVEGSLGKFVDEKKTQLLKDKGLPIEGCAIV 155
Query: 115 SARTDKGVSAVGQVVS---GRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCD 171
+ RTDKGV+ + QV S + + P + + +N P ++R+ V+ F+
Sbjct: 156 AGRTDKGVTGLQQVCSFYTWKKDVKPRDIEDAINHAAPGKLRVISVSEVSRVFHPNFSAK 215
Query: 172 QRRYVYLLPV 181
RRY+Y+ P+
Sbjct: 216 WRRYLYIFPL 225
>gi|154486775|ref|ZP_02028182.1| hypothetical protein BIFADO_00600 [Bifidobacterium adolescentis
L2-32]
gi|154084638|gb|EDN83683.1| tRNA pseudouridine synthase A [Bifidobacterium adolescentis L2-32]
Length = 306
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ I AY G G+ G K P +T++G++E L V E D P R A RTD
Sbjct: 6 RLRIDLAYDGTGFYGWAKQPEIRTVQGEIERVLHTILRVPEGDPTEPLRLTVA--GRTDT 63
Query: 121 GVSAVGQVVS-------GRFCID----PP--GLVERLNSNLPTQIRIFGYKRVTASFNAK 167
GV A QV + C+ PP L RL LP I I G F+A+
Sbjct: 64 GVHASHQVCHLDVNEDVLKRCVGHMDVPPVIALTRRLQRMLPADIAIRGIAPAPNGFDAR 123
Query: 168 KFCDQRRYVY 177
+R YVY
Sbjct: 124 FSALERTYVY 133
>gi|375087869|ref|ZP_09734214.1| tRNA pseudouridine synthase A [Dolosigranulum pigrum ATCC 51524]
gi|374563579|gb|EHR34891.1| tRNA pseudouridine synthase A [Dolosigranulum pigrum ATCC 51524]
Length = 260
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117
+R K+ + AY G Y G Q P TI+G+LE+AL +G R A R
Sbjct: 2 QRYKLTV--AYDGTNYSGFQVQPNVPTIQGELEQAL------QRIAKGEFVRIHGA--GR 51
Query: 118 TDKGVSAVGQV--VSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRY 175
TD GV A GQV + F I G++ +++N PT I +RV+ +F+A+ + Y
Sbjct: 52 TDAGVHAAGQVCHFNFPFYISEEGMLRAIDANTPTDIVPQKVERVSDTFHARYDACGKMY 111
Query: 176 VYLL 179
Y L
Sbjct: 112 EYRL 115
>gi|197294307|ref|YP_001798848.1| tRNA pseudouridine synthase A [Candidatus Phytoplasma australiense]
gi|171853634|emb|CAM11505.1| tRNA pseudouridine synthase A [Candidatus Phytoplasma australiense]
Length = 245
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
+Y G Y G QK P KTI+ LE AL R+ + ++RTDKGV A
Sbjct: 13 SYDGTCYCGYQKQPQTKTIQQTLENAL---------KSMTKRQINTFAASRTDKGVHAQE 63
Query: 127 QVVSGR--FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
Q + + F I+ LN LP IRI ++ TA F+A+ + + Y Y+
Sbjct: 64 QTIHFQTAFAIELKRFKNTLNRILPPDIRIKKIEKATADFHARYWAKSKIYHYIF 118
>gi|342181526|emb|CCC91005.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 446
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 60 RKIAIFFAYCGVGYQGMQKNP-GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
RKIA+ AY G Y G+ + T+E + +AL V D P+ D +R RT
Sbjct: 43 RKIALRLAYHGHVYNGLVRQAETPNTVEAFVVDALRRLNLV---DPSGPK--DLSRCGRT 97
Query: 119 DKGVSAVGQVVS-----GRFCID-----PPGLVERLNSNLPTQIRIFGYKRVTASFNAKK 168
DKGVSA+G +S + D P LN+ LP IRI G+ V F+A+
Sbjct: 98 DKGVSALGNALSFTARSSSWPADENQKQPLDYCAMLNNVLPPTIRIVGWAYVEDCFDARF 157
Query: 169 FCDQRRYVYLL 179
C R Y Y
Sbjct: 158 SCVGRTYRYYF 168
>gi|260662783|ref|ZP_05863677.1| tRNA pseudouridine synthase A [Lactobacillus fermentum 28-3-CHN]
gi|260552864|gb|EEX25863.1| tRNA pseudouridine synthase A [Lactobacillus fermentum 28-3-CHN]
Length = 258
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+ I FAY G + G Q PG +T++ LE A+ ++++ + P + S RTD
Sbjct: 3 RYKITFAYDGSNFAGFQVQPGERTVQQALERAV---NKIAKKPQ--PPLMVFG-SGRTDA 56
Query: 121 GVSAVGQVVSGR--FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A+GQV + I P LV LNS+LP + + V F+A+ +RY Y
Sbjct: 57 GVHALGQVAHFDLPYQIPGPSLVRALNSSLPLDVLVKEATEVAPDFHARFDAHHKRYRY 115
>gi|429962244|gb|ELA41788.1| tRNA pseudouridine synthase A [Vittaforma corneae ATCC 50505]
Length = 327
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 26/143 (18%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
+RK+A+ +Y G Y+G+Q K++ L+ AL SG G+ + RT
Sbjct: 36 KRKVALRLSYHGENYKGVQHYKHLKSVHDCLQNALKVSGI------GDGIVF----CGRT 85
Query: 119 DKGVSAVGQVVSGRFC--IDPPG----LVER----------LNSNLPTQIRIFGYKRVTA 162
D GVSA+ VVS ++ P ++E LN LP IRI G+ V
Sbjct: 86 DAGVSAINMVVSVEVNSRLENPNRSYQIIESDHEEYPYDVALNMLLPDDIRITGWAPVPD 145
Query: 163 SFNAKKFCDQRRYVYLLPVFALD 185
+FNA+ C QR Y Y + +LD
Sbjct: 146 NFNARYDCIQRHYKYFFALGSLD 168
>gi|313884603|ref|ZP_07818364.1| tRNA pseudouridine synthase A [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620387|gb|EFR31815.1| tRNA pseudouridine synthase A [Eremococcus coleocola
ACS-139-V-Col8]
Length = 256
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+ AI Y G Y G Q P +++ L+ AL +++R +P S RTD
Sbjct: 3 RYAIKVEYDGSNYVGYQVQPNGPSVQAQLDRALL---KLAKRPADHPVL--TVASGRTDS 57
Query: 121 GVSAVGQVVSGR--FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A+GQVV F I P L + LNS L IR+ +V F+A+ + Y+Y
Sbjct: 58 GVHALGQVVHFDLDFEIHPLALAKALNSILNKDIRVVAVSQVAPDFHARYHAIGKAYLY 116
>gi|331702049|ref|YP_004399008.1| tRNA pseudouridine synthase A [Lactobacillus buchneri NRRL B-30929]
gi|329129392|gb|AEB73945.1| tRNA pseudouridine synthase A [Lactobacillus buchneri NRRL B-30929]
Length = 267
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
R K+ + AY G + G ++ P +TIEG L + + + ++ P S RT
Sbjct: 5 RYKVTL--AYDGTLFSGFERQPKRRTIEGVLTQKV----NIMAKNPDPP--IVVYGSGRT 56
Query: 119 DKGVSAVGQVVSGRFCIDPP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
D GV A+GQVV F D P + LNS LP + I ++V+ +F+A+ +RYV
Sbjct: 57 DAGVHALGQVVHFDFPFDLPTKAIYRGLNSLLPLDMEIKKAEKVSNTFHARYDVSGKRYV 116
Query: 177 YLL 179
Y L
Sbjct: 117 YRL 119
>gi|218296263|ref|ZP_03497019.1| tRNA pseudouridine synthase A [Thermus aquaticus Y51MC23]
gi|218243335|gb|EED09865.1| tRNA pseudouridine synthase A [Thermus aquaticus Y51MC23]
Length = 259
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 60 RKIAIFFAYCGVGYQGMQKN-PGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
R+I + Y G + G+Q+ G +T++G+LE+AL H GA+ + + RT
Sbjct: 2 RRILLLTEYDGTHFAGLQRQRQGLRTVQGELEKALPHIGALPKA----------VAAGRT 51
Query: 119 DKGVSAVGQV--VSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
D GV A+ + + I P + E LN LP +++ + V F+A+K R Y
Sbjct: 52 DAGVHALAMPFHIDLQSPIPPEKVPEALNRLLPEDLKVVAAREVAPDFHARKDALWRAYR 111
Query: 177 Y 177
Y
Sbjct: 112 Y 112
>gi|365902558|ref|ZP_09440381.1| pseudouridylate synthase [Lactobacillus malefermentans KCTC 3548]
Length = 258
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
AY G + G Q+ P +T+EG+L + + ++++ + + Y S RTD GV A+G
Sbjct: 2 AYDGTNFAGFQRQPNTRTVEGELTKVV---NMMAKKPQPPLQVYG---SGRTDAGVHALG 55
Query: 127 QVVSGRFCID--PPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
QVV F D + + LNS L + + ++V+++F+A+ +RY+Y
Sbjct: 56 QVVHFDFPFDIEADNMRKGLNSMLAVDMEVLRVEKVSSTFHARYDVSGKRYMY 108
>gi|398019410|ref|XP_003862869.1| pseudouridine synthase A-like protein, putative [Leishmania
donovani]
gi|322501100|emb|CBZ36178.1| pseudouridine synthase A-like protein, putative [Leishmania
donovani]
Length = 499
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 69/157 (43%), Gaps = 25/157 (15%)
Query: 41 LIPAAAGADSTTKRQLCKR---------RKIAIFFAYCGVGYQGMQKNPGA-KTIEGDLE 90
L P A +TK+Q +R RKIA+ AY G + G+ K T+EG +
Sbjct: 32 LPPTALLKLGSTKKQRTERAFLFDRYPSRKIALRLAYHGHVHDGLAKQKETDNTVEGLVC 91
Query: 91 EALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVS----------GRFCIDPPGL 140
+AL + E N + R RTDKGVSA+G +S + P
Sbjct: 92 DALRRLRLIPEDGPHN-----FGRCGRTDKGVSALGNALSLTARASCTADAEPQLPPLDY 146
Query: 141 VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
LN+ LP+ IRI G V +F+A+ C R Y Y
Sbjct: 147 CSMLNNVLPSTIRIVGCALVDDAFDARFSCVHRTYRY 183
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 353 YVGSHNFHNFTTRTKAEDPSARRYIISFGAD-SVVNVEGIDFLKCEVVGQSFMLHQIRKM 411
++G+HNF NF + R + S G S E I +L E+ SF+ HQIR +
Sbjct: 202 FLGTHNFRNFCKMDVVNVSNFVRTVFSVGLHPSEALPELISYL--EIRANSFLYHQIRCI 259
Query: 412 IGLAVAVVRNCAPQSLIETALQK-DVNINVPTAPEVGLYLDECIFASYNKKWKDSH 466
+ + V R S+++T L++ D P A L L +C F N +W+ SH
Sbjct: 260 MEVLFLVGRGLEVPSVVQTLLERGDRKPTYPLADGTPLVLWDCGFD--NVQWQMSH 313
>gi|29831498|ref|NP_826132.1| tRNA pseudouridine synthase A [Streptomyces avermitilis MA-4680]
gi|38258718|sp|Q82DM1.1|TRUA_STRAW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|29608614|dbj|BAC72667.1| putative pseudouridine synthase [Streptomyces avermitilis MA-4680]
Length = 285
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 61 KIAIFFAYCGVGYQGMQKNP-GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
++ + +Y G + G K G +T++G++E+AL R Y+ + RTD
Sbjct: 11 RVRLDLSYDGTEFSGWAKQAAGRRTVQGEIEDAL------RTVTRSGETTYELTVAGRTD 64
Query: 120 KGVSAVGQVVSGRFCIDPPG---------LVERLNSNLPTQIRIFGYKRVTASFNAKKFC 170
GV A GQV +D PG L++RL LP +R++ + FNA+
Sbjct: 65 AGVHARGQVAH----VDLPGELWAEHQEKLLKRLAGRLPKDVRVWSLTEAPSGFNARFSA 120
Query: 171 DQRRYVY 177
RRY Y
Sbjct: 121 IWRRYAY 127
>gi|435847780|ref|YP_007310030.1| pseudouridylate synthase [Natronococcus occultus SP4]
gi|433674048|gb|AGB38240.1| pseudouridylate synthase [Natronococcus occultus SP4]
Length = 289
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 63 AIFFAYCGVGYQGMQKNP--GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
A AY G Y+G Q+ P T+E L +AL G V E D P Y A + RTD
Sbjct: 5 AYRIAYDGSDYRGFQRQPQPDVPTVEDVLFDALRAHG-VLEPDADKPTGY--AAAGRTDA 61
Query: 121 GVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
GVSA+ Q ++ P L R N LP +R + A F+A +R Y Y L
Sbjct: 62 GVSALSQTIAFEA---PDWLAPRAFNGELPADVRAWAVADAPADFHATHHASRREYTYHL 118
>gi|428184071|gb|EKX52927.1| hypothetical protein GUITHDRAFT_161113 [Guillardia theta CCMP2712]
Length = 419
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 57/121 (47%), Gaps = 20/121 (16%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
R IAI +Y G ++G +TIEG L AL + + R + ++R ART
Sbjct: 79 RHIAIELSYLGWDFKGFASQEDTNETIEGHLFAALSKTCLIPSRASSS-----YSRCART 133
Query: 119 DKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
DKGVSA+GQVVS R + P L + +N+ LP IR + C R Y Y
Sbjct: 134 DKGVSALGQVVSLR---ELPYL-QMINALLPPTIRAIAWFA----------CSMRSYKYF 179
Query: 179 L 179
Sbjct: 180 F 180
>gi|206901950|ref|YP_002250733.1| tRNA pseudouridine synthase A [Dictyoglomus thermophilum H-6-12]
gi|238057728|sp|B5YDX5.1|TRUA_DICT6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|206741053|gb|ACI20111.1| tRNA pseudouridine synthase A [Dictyoglomus thermophilum H-6-12]
Length = 245
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 17/119 (14%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVG 126
+Y G + G QK PG +T++G+LE+ L + + D + RTD GV A+G
Sbjct: 9 SYIGKDFWGFQKQPGKRTVQGELEKVL---KLLFDEDIKV------IGAGRTDAGVHALG 59
Query: 127 QVV------SGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
QVV S F D L + LN LP I+I + V +F+A+ +R Y+Y++
Sbjct: 60 QVVNFKTKESKNFSCDK--LYKVLNKLLPGDIKIKKVEIVDDNFHARYSAKRRWYIYVI 116
>gi|410459899|ref|ZP_11313588.1| tRNA pseudouridine synthase A [Bacillus azotoformans LMG 9581]
gi|409928010|gb|EKN65134.1| tRNA pseudouridine synthase A [Bacillus azotoformans LMG 9581]
Length = 245
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 18/119 (15%)
Query: 67 AYCGVGYQGMQKNPGAKTIEGDLEEALF--HSGAVSERDRGNPRRYDWARSARTDKGVSA 124
AY G + G Q +T++GD+E+ALF H G E R +P S RTD GV A
Sbjct: 9 AYDGTNFSGFQVQSNGRTVQGDIEKALFKLHKG---EEIRIHP-------SGRTDAGVHA 58
Query: 125 VGQVVSGRFCIDPPGLVER----LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
GQV+ + P V+R LN+ LP I + V F+A+ ++ Y Y L
Sbjct: 59 HGQVIHFDSPLSIP--VDRYQMALNTLLPDDIVALTIENVNTDFHARYNVVKKEYRYFL 115
>gi|357020783|ref|ZP_09083014.1| tRNA pseudouridine synthase A [Mycobacterium thermoresistibile ATCC
19527]
gi|356478531|gb|EHI11668.1| tRNA pseudouridine synthase A [Mycobacterium thermoresistibile ATCC
19527]
Length = 286
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 58/137 (42%), Gaps = 25/137 (18%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++ + AY G + G G +T+ G LEEAL + + RG + RTD
Sbjct: 12 RLRLDIAYDGTDFAGWATQAGQRTVAGVLEEALSTVFRTALQLRG---------AGRTDT 62
Query: 121 GVSAVGQVVSGRFCID-----------PPG-----LVERLNSNLPTQIRIFGYKRVTASF 164
GV A GQV D P G LV RL LPT +R+ +R F
Sbjct: 63 GVHATGQVAHVDVPADALVHAYPRTGRPAGHEFLPLVRRLARFLPTDVRVLDIRRAAPGF 122
Query: 165 NAKKFCDQRRYVYLLPV 181
+A+ +R Y+Y L V
Sbjct: 123 DARFSALRRHYIYRLSV 139
>gi|315230173|ref|YP_004070609.1| tRNA pseudouridine synthase A [Thermococcus barophilus MP]
gi|315183201|gb|ADT83386.1| tRNA pseudouridine synthase A [Thermococcus barophilus MP]
Length = 266
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+IA+ AY G + G Q+ PG +T+EG++ L + +P ++ ++RTD+
Sbjct: 2 RIALKIAYDGSKFYGFQRQPGLRTVEGEIIRVLQKLDVIE-----SPENANFKGASRTDR 56
Query: 121 GVSAVGQVVSGRFCIDPPGLVER--LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYL 178
GVSA+G V++ F + P L + LN +L I + G +V+ F+ + + + Y Y
Sbjct: 57 GVSALGNVIA--FNTENPKLAQPRVLNHHL-RDIWVLGVAQVSDDFHPRFWAKSKIYRYY 113
Query: 179 L 179
L
Sbjct: 114 L 114
>gi|88603643|ref|YP_503821.1| tRNA pseudouridine synthase ACD [Methanospirillum hungatei JF-1]
gi|88189105|gb|ABD42102.1| tRNA pseudouridine synthase A [Methanospirillum hungatei JF-1]
Length = 276
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 12/160 (7%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
++A Y G + G Q P +T+EG++E A +G ++ R A S RTD+
Sbjct: 12 RLAFRIGYIGTSFFGSQYQPDQRTVEGEIEAACLRAGIITSRQVSR-----LALSGRTDR 66
Query: 121 GVSAVGQVVSGRFCIDPPGLVER-LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLL 179
GV A Q+++ P L R LN LP I + + SF + R Y Y
Sbjct: 67 GVHAKCQILA--LSTHNPDLAVRALNGQLPPDIWVSAWAYAPESFYPRYDVIIRTYRYYF 124
Query: 180 PVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVI 219
D ++ RD A L G +C E G+ +
Sbjct: 125 SRPPSDINAMRD----AAGLFLGTHDFRCFARIEPGKSPV 160
>gi|306820983|ref|ZP_07454602.1| tRNA pseudouridine synthase A [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304550924|gb|EFM38896.1| tRNA pseudouridine synthase A [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 245
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTD 119
R I + +Y G Y G Q+ A +I+ +E+A+ S +E + S RTD
Sbjct: 2 RNILLEISYDGTNYSGWQRQKNAISIQEKIEDAI--SLICNEE-------INVIASGRTD 52
Query: 120 KGVSAVGQV--VSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A+ Q+ S ID + +N+ LP IRI K V FNA+ ++ Y+Y
Sbjct: 53 AGVHALSQIANFSTSSSIDAKKFAKAINTKLPDDIRILSSKEVDEDFNARFSAKKKTYIY 112
>gi|227515518|ref|ZP_03945567.1| tRNA-pseudouridine synthase I [Lactobacillus fermentum ATCC 14931]
gi|227086131|gb|EEI21443.1| tRNA-pseudouridine synthase I [Lactobacillus fermentum ATCC 14931]
Length = 258
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120
+ I FAY G + G Q PG +T++ LE A+ ++++ + P + S RTD
Sbjct: 3 RYKITFAYDGSNFAGFQVQPGERTVQQVLERAV---NKIAKKPQ--PPLMVFG-SGRTDA 56
Query: 121 GVSAVGQVVSGR--FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVY 177
GV A+GQV + I P LV LNS+LP + + V F+A+ +RY Y
Sbjct: 57 GVHALGQVAHFDLPYQIPGPSLVRALNSSLPLDVLVKEATEVAPDFHARFDAHHKRYRY 115
>gi|392530584|ref|ZP_10277721.1| tRNA pseudouridine synthase A [Carnobacterium maltaromaticum ATCC
35586]
Length = 272
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
R K+ I Y G Y G Q P +T++GD+E+AL +G + S RT
Sbjct: 5 RYKVTI--QYDGTNYSGFQIQPKDRTVQGDIEKAL------KTMTKGIAIKLQ--ASGRT 54
Query: 119 DKGVSAVGQVVSGRF--CIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
D GV A+GQV+ + I P + + LNS +I I + V +F+A+ F ++ Y
Sbjct: 55 DAGVHALGQVIHYDYPAMIPPERMQQALNSLTTDEIAIVKVEIVDETFHARYFTAEKTYQ 114
Query: 177 Y 177
Y
Sbjct: 115 Y 115
>gi|312378112|gb|EFR24771.1| hypothetical protein AND_10418 [Anopheles darlingi]
Length = 376
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 59/141 (41%), Gaps = 22/141 (15%)
Query: 57 CKRRKIAIFFAYCGVGYQGMQ-KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARS 115
C +R I + F Y G YQG + +TIE L AL + R+ N + R
Sbjct: 70 CHKRHILLRFFYLGWDYQGFAAQEDSIETIEHHLFTALQKVCLIESRETSN-----YNRC 124
Query: 116 ARTDKGVSAVGQVVS----GRFCIDPPGLVE-----------RLNSNLPTQIRIFGYK-R 159
RTDKGVSA QV+S + + L E LN LP +IR +
Sbjct: 125 GRTDKGVSAFHQVISIDVRSKIAPEDDQLSEDSLATELDYCGMLNRVLPEEIRCLAWMPM 184
Query: 160 VTASFNAKKFCDQRRYVYLLP 180
V ++A+ C R Y Y P
Sbjct: 185 VNPGYSARFDCRSRTYRYFFP 205
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,100,079,921
Number of Sequences: 23463169
Number of extensions: 293898923
Number of successful extensions: 735482
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 3381
Number of HSP's that attempted gapping in prelim test: 727334
Number of HSP's gapped (non-prelim): 7046
length of query: 468
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 322
effective length of database: 8,933,572,693
effective search space: 2876610407146
effective search space used: 2876610407146
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 79 (35.0 bits)