Query 045140
Match_columns 468
No_of_seqs 248 out of 1300
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 10:14:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2553 Pseudouridylate syntha 100.0 5.5E-88 1.2E-92 685.3 26.7 309 53-468 30-342 (416)
2 PLN03078 Putative tRNA pseudou 100.0 5E-75 1.1E-79 609.9 29.8 266 52-461 63-424 (513)
3 COG0101 TruA Pseudouridylate s 100.0 2.2E-70 4.7E-75 541.0 28.0 248 59-462 1-251 (266)
4 PRK00021 truA tRNA pseudouridi 100.0 1.5E-69 3.1E-74 531.5 28.7 241 59-455 1-244 (244)
5 PRK12434 tRNA pseudouridine sy 100.0 1.9E-69 4E-74 531.1 28.4 241 59-455 1-245 (245)
6 PRK14588 tRNA pseudouridine sy 100.0 2.9E-69 6.2E-74 536.8 28.6 251 59-462 1-254 (272)
7 PRK14586 tRNA pseudouridine sy 100.0 1.5E-68 3.2E-73 524.8 28.4 241 59-455 1-245 (245)
8 cd02570 PseudoU_synth_EcTruA P 100.0 1.1E-67 2.3E-72 516.7 27.6 236 64-455 1-239 (239)
9 TIGR00071 hisT_truA pseudourid 100.0 5.5E-67 1.2E-71 508.3 27.3 224 60-450 1-227 (227)
10 cd02568 PseudoU_synth_PUS1_PUS 100.0 3.9E-67 8.6E-72 514.5 25.0 236 64-455 1-245 (245)
11 PRK14589 tRNA pseudouridine sy 100.0 1.9E-66 4.2E-71 514.3 27.3 226 61-457 2-227 (265)
12 cd00497 PseudoU_synth_TruA_lik 100.0 5.1E-66 1.1E-70 500.6 26.0 222 66-455 1-224 (224)
13 cd02866 PseudoU_synth_TruA_Arc 100.0 6.1E-66 1.3E-70 499.1 25.8 220 64-455 1-221 (221)
14 cd02569 PseudoU_synth_ScPus3 P 100.0 1.9E-65 4.2E-70 505.4 26.5 230 64-455 1-256 (256)
15 PRK14587 tRNA pseudouridine sy 100.0 6.9E-62 1.5E-66 479.0 24.6 213 60-457 1-214 (256)
16 KOG2554 Pseudouridylate syntha 100.0 9.3E-51 2E-55 404.5 19.1 246 55-464 61-329 (425)
17 KOG4393 Predicted pseudouridyl 100.0 1E-38 2.3E-43 307.6 16.9 250 59-457 4-278 (295)
18 PF01416 PseudoU_synth_1: tRNA 99.8 1.1E-22 2.3E-27 174.2 -5.3 101 349-456 1-105 (105)
19 PF01416 PseudoU_synth_1: tRNA 98.2 6.4E-08 1.4E-12 82.7 -3.4 89 65-169 2-105 (105)
20 PF10105 DUF2344: Uncharacteri 96.3 0.03 6.6E-07 53.4 10.3 97 84-181 19-117 (187)
21 COG5011 Uncharacterized protei 85.7 2 4.4E-05 41.5 6.1 94 87-180 23-119 (228)
22 TIGR01213 conserved hypothetic 74.7 74 0.0016 34.0 13.8 91 82-180 184-284 (388)
23 cd01291 PseudoU_synth PseudoU_ 51.3 29 0.00063 28.4 4.6 20 110-130 24-43 (87)
24 PF09153 DUF1938: Domain of un 41.3 32 0.00069 28.9 3.2 29 389-417 22-50 (86)
25 PF11691 DUF3288: Protein of u 27.7 31 0.00066 29.4 1.1 26 72-100 37-62 (90)
26 TIGR00685 T6PP trehalose-phosp 25.8 84 0.0018 30.6 4.0 50 60-117 2-51 (244)
27 PRK14554 putative pseudouridyl 23.4 9.8E+02 0.021 26.0 13.3 89 83-181 220-318 (422)
28 COG1258 Predicted pseudouridyl 20.9 3.1E+02 0.0067 29.4 7.1 89 82-180 190-289 (398)
No 1
>KOG2553 consensus Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-88 Score=685.26 Aligned_cols=309 Identities=49% Similarity=0.775 Sum_probs=277.5
Q ss_pred cccccCcceEEEEEEEeCCCccceeecCCCCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeE
Q 045140 53 KRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR 132 (468)
Q Consensus 53 ~~~~~~krkval~i~Y~Gt~Y~G~Q~qp~~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~ 132 (468)
++++++|+||+|+|||||++|+|||+||+.+||||+|++||+++|+|++.|+++++++.|+|||||||||||++||||++
T Consensus 30 ~~~k~~KrKVail~gY~G~gY~GmQ~N~~~kTIEgeL~~al~~aGaI~e~n~~dpkk~~~~raARTDKGVhA~~nviSlK 109 (416)
T KOG2553|consen 30 KAPKPRKRKVAILLGYCGTGYHGMQYNPPLKTIEGELFEALFKAGAISESNAGDPKKIGFARAARTDKGVHAAGNVISLK 109 (416)
T ss_pred ccccccceEEEEEEEeccCCccceecCCCCCchHHHHHHHHHHcCCcccccccChHHhhhHHhhccccchhhhhheeEEE
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecChhHHHHHHhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCCcchhhhhhhh
Q 045140 133 FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECS 212 (468)
Q Consensus 133 ~~id~~~l~~~LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~~e~~~~~~~~ 212 (468)
+.++++.++..||.+||++||||+|.||+++||||..|++|+|+|+||+++|.|+.+...+.+.. .+.+|+ |+
T Consensus 110 ~~~~~~~lv~~lN~~Lp~~IRv~~v~r~~k~F~pr~~CdsR~YeYllPtfal~~p~~~~~~~~~~------~~~~e~-~~ 182 (416)
T KOG2553|consen 110 LELDDPELVEKLNEILPEQIRVWGVKRVTKSFNPRKQCDSRTYEYLLPTFALAPPKPSSLLEVDI------QYDKEF-EK 182 (416)
T ss_pred EeeCcHHHHHHHhhhCCcceEEEEEEecCCCCCccccccceeEEEecceeeecCCCCccHHHhhh------hhhhhh-hh
Confidence 99999999999999999999999999999999999999999999999999999876655443332 267777 66
Q ss_pred ccccccc-cccccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCcccccccccc
Q 045140 213 ERGRKVI-GVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVE 291 (468)
Q Consensus 213 ~~~~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (468)
+-+++++ +.+++.+.+
T Consensus 183 ~f~~~~~~~~~~~~s~~--------------------------------------------------------------- 199 (416)
T KOG2553|consen 183 EFWNTYPLSAKERLSGQ--------------------------------------------------------------- 199 (416)
T ss_pred hhccccchhhhhhhccc---------------------------------------------------------------
Confidence 6555431 111111000
Q ss_pred ccccccccccccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccccCCcCCCCC
Q 045140 292 SRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDP 371 (468)
Q Consensus 292 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnFt~~~~~~d~ 371 (468)
+ ......|+++++.++.++++|+.|+|||||||||+++...||
T Consensus 200 ------------------------------------~-~~~~~~yr~s~~~l~~~~~~ls~Y~GthnFHNfT~~~~~~dp 242 (416)
T KOG2553|consen 200 ------------------------------------D-RKTESGYRLSEEKLEVFNTILSKYVGTHNFHNFTTGKDFTDP 242 (416)
T ss_pred ------------------------------------c-cccccceeeCHHHHHHHHHHHHHhhcccccceecccCCCCCc
Confidence 0 013467999999999999999999999999999999999999
Q ss_pred CceEEEEEEEEeeeeee--cCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCCCCCCCCCCCCce
Q 045140 372 SARRYIISFGADSVVNV--EGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLY 449 (468)
Q Consensus 372 s~~R~I~s~~~~~~~~~--~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~~~~~~~ip~APa~GL~ 449 (468)
++.|+|.+|.+++++.+ +|.+||.|.|+|||||+||||||||+||+|+|+++|.++|+.+|.++.++++|+||++||+
T Consensus 243 ss~R~I~s~~~~~pfv~~~~~~e~V~i~i~GQSFMLHQIRKMVglav~i~R~~~p~~~i~~af~~~~ri~IP~AP~~gLl 322 (416)
T KOG2553|consen 243 SSNRFIKSFTVSEPFVINDEGVEFVKIKIHGQSFMLHQIRKMVGLAVLIVRSGAPASTIQRAFNKEHKINIPKAPGEGLL 322 (416)
T ss_pred cccceeeEEEecCcceeccCCceEEEEEEEcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCccccccCCCcceEE
Confidence 99999999999988877 7899999999999999999999999999999999999999999998899999999999999
Q ss_pred eeecccCCCCcccccc-cCC
Q 045140 450 LDECIFASYNKKWKDS-HEE 468 (468)
Q Consensus 450 L~~v~y~~yn~~~~~~-~~~ 468 (468)
|++|.|++||++...+ ||+
T Consensus 323 L~~~~F~~yn~~~~~~~~e~ 342 (416)
T KOG2553|consen 323 LEEPHFESYNRKFRPSGHEE 342 (416)
T ss_pred eecccccccccccCCCCcCC
Confidence 9999999999999988 553
No 2
>PLN03078 Putative tRNA pseudouridine synthase; Provisional
Probab=100.00 E-value=5e-75 Score=609.86 Aligned_cols=266 Identities=38% Similarity=0.624 Sum_probs=237.0
Q ss_pred ccccccCcceEEEEEEEeCCCccceeecCC---CCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCE
Q 045140 52 TKRQLCKRRKIAIFFAYCGVGYQGMQKNPG---AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQV 128 (468)
Q Consensus 52 ~~~~~~~krkval~i~Y~Gt~Y~G~Q~qp~---~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qV 128 (468)
.++.+++|++|+|+|+|+||+|+|||+|++ .+|||++||+||.+++.|.+.|+++++++.|+|||||||||||+|||
T Consensus 63 ~~w~~~~krrvaL~IaYdGt~Y~G~Q~Q~n~~~~~TVEg~LE~AL~k~~~I~e~n~~~~~ki~~~rAgRTDkGVHA~gQV 142 (513)
T PLN03078 63 MKWESARKKKVVLRVGYVGTDYRGLQKQRDLSSLSTIEGELETAIFKAGGIRESNYGNLHKIGWARSSRTDKGVHSLATM 142 (513)
T ss_pred CCcccccceEEEEEEEEcCCCcceeeECCCCCCCCCHHHHHHHHHHHHhCccccccccccceeEEeeccCCcCccccccE
Confidence 456789999999999999999999999987 58999999999999999999999999999999999999999999999
Q ss_pred EeeEeecC-------hh--HHHHHHhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhh
Q 045140 129 VSGRFCID-------PP--GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASL 199 (468)
Q Consensus 129 vs~~~~id-------~~--~l~~~LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~ 199 (468)
|||++.++ ++ .|+..||++||+||||++|.+|+.+||||++|++|+|+|+||++.+.+... +
T Consensus 143 vsf~l~~p~~~~~~d~~~~~L~~~LN~~LP~DIRVl~v~~V~~~FhAR~sc~sRtY~Y~iP~~~~~~k~~---------f 213 (513)
T PLN03078 143 ISLKMEIPENAWKDDPDGIALAKFINSHLPDNIRVFSILPAQRSFDPRRECDLRKYSYLLPAEVIGIKSG---------F 213 (513)
T ss_pred EEEeccCcchhccccchHHHHHHHHHhcCCCCeEEEEEEECCCCcCCCCCCCceEEEEEEccccccCCCc---------c
Confidence 99997552 22 578999999999999999999999999999999999999999754221100 0
Q ss_pred CCCcchhhhhhhhccccccccccccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhc
Q 045140 200 GSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVEN 279 (468)
Q Consensus 200 ~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 279 (468)
.
T Consensus 214 ~------------------------------------------------------------------------------- 214 (513)
T PLN03078 214 S------------------------------------------------------------------------------- 214 (513)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cCccccccccccccccccccccccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhccccccc
Q 045140 280 ANSESVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNF 359 (468)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdF 359 (468)
..+.+ .|+++|++|+++|+|||||
T Consensus 215 ---------------------------------------------------~~~~~-----~dI~kMneAl~~fiGtHDF 238 (513)
T PLN03078 215 ---------------------------------------------------SEEID-----EHISEFNSILNGFEGEHPF 238 (513)
T ss_pred ---------------------------------------------------hhhhH-----HHHHHHHHHHHhcccccCc
Confidence 00011 2799999999999999999
Q ss_pred ccccCCcCCCCC--------------------------------------------------------------------
Q 045140 360 HNFTTRTKAEDP-------------------------------------------------------------------- 371 (468)
Q Consensus 360 hnFt~~~~~~d~-------------------------------------------------------------------- 371 (468)
||||.+.++.++
T Consensus 239 hNFT~r~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (513)
T PLN03078 239 HNYTARSKYRKKLPGKHKQRNGAVSRRAKSSKEMSSSESEENHGEISEEDEEDLSFSSIPSGSSDENEDILKFQSSQVQI 318 (513)
T ss_pred ccccCCCccCccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccchhh
Confidence 999998776654
Q ss_pred ----------------CceEEEEEEEEeeeeeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhCCC
Q 045140 372 ----------------SARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKD 435 (468)
Q Consensus 372 ----------------s~~R~I~s~~~~~~~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~~~ 435 (468)
++.|+|++|.+..++...|.+||+|.|.||||||||||||||++++|++|.+|+++|..+|.+.
T Consensus 319 ~~~wl~e~d~~d~i~~s~~R~I~~~~~~~~~~~~g~~fv~i~I~GqSFmlhQIRKMIG~~~aV~rg~~~~~~i~~~L~~~ 398 (513)
T PLN03078 319 RARWLHEPDETDRISASHFRKIFRCSCGKLEKSLGFDFVELSIWGESFMLHQIRKMVGTAVAVKRELLPRDIIRLSLTKF 398 (513)
T ss_pred hhhhccCCccccccchhheEEEEEeecCCccccCCceEEEEEEEehhHHHHHHHHHHHHHHHHHhccCCHHHHHHHhccc
Confidence 4589999999998888889999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCceeeecccCCCCcc
Q 045140 436 VNINVPTAPEVGLYLDECIFASYNKK 461 (468)
Q Consensus 436 ~~~~ip~APa~GL~L~~v~y~~yn~~ 461 (468)
.++.+|+||+.||||.+|.|..||+.
T Consensus 399 ~r~~~P~AP~~GL~L~~~~F~~yn~~ 424 (513)
T PLN03078 399 SRIVLPLAPSEVLILRGNSFSVRKKP 424 (513)
T ss_pred cccccccCCCcceEEEeeeccccccc
Confidence 89999999999999999999999874
No 3
>COG0101 TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-70 Score=540.97 Aligned_cols=248 Identities=29% Similarity=0.428 Sum_probs=221.3
Q ss_pred cceEEEEEEEeCCCccceeecCCCCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEeecC--
Q 045140 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCID-- 136 (468)
Q Consensus 59 krkval~i~Y~Gt~Y~G~Q~qp~~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~id-- 136 (468)
|+||+|.|+||||+|+|||+||+.+||||+||+||.+++.+ ++.+.+||||||||||.|||+||++..+
T Consensus 1 m~ri~l~iaYdGt~f~G~Q~Qp~~~TVQ~~le~aL~~i~~~---------~~~i~~AGRTD~GVHA~gqv~hfd~~~~~~ 71 (266)
T COG0101 1 MKRIALKIAYDGTRFHGWQRQPNVRTVQGELEKALSKIGGE---------SVRVIGAGRTDAGVHALGQVVHFDTPADRP 71 (266)
T ss_pred CceEEEEEEEcCCceeeeccCCCCCCHHHHHHHHHHHhcCC---------cceeEEecCCCcCccccccEEEEEcCCccc
Confidence 46999999999999999999999999999999999999875 3589999999999999999999998654
Q ss_pred hhHHHHHHhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCCcchhhhhhhhcccc
Q 045140 137 PPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGR 216 (468)
Q Consensus 137 ~~~l~~~LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~ 216 (468)
+..|..+||++||+||+|+++.+|+++|||||+|.+|+|+|+|+...+ |.+. .
T Consensus 72 ~~~~~~~lN~~Lp~dI~V~~~~~v~~~FhaRfsa~~R~Y~Y~i~~~~~-~~~~------~-------------------- 124 (266)
T COG0101 72 LEKLVRALNALLPPDIRVLDVAEVPDDFHARFSAKSRTYRYIIYNAPL-RPPF------L-------------------- 124 (266)
T ss_pred HHHHHHHHHhcCCCCcEEEEEEECCCCCCCcccccceEEEEEEcCccC-CChh------h--------------------
Confidence 578999999999999999999999999999999999999999997554 2110 0
Q ss_pred ccccccccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCccccccccccccccc
Q 045140 217 KVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSE 296 (468)
Q Consensus 217 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (468)
T Consensus 125 -------------------------------------------------------------------------------- 124 (266)
T COG0101 125 -------------------------------------------------------------------------------- 124 (266)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccccCCcCCCCCCceEE
Q 045140 297 TVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRY 376 (468)
Q Consensus 297 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnFt~~~~~~d~s~~R~ 376 (468)
..+.||...++|+++|++|++.|+|+|||+|||+..... .+++|+
T Consensus 125 ----------------------------------~~~~~~~~~~ld~~~m~~aa~~l~G~HDF~sF~~~~~~~-~s~vRt 169 (266)
T COG0101 125 ----------------------------------ANYVWHVPYPLDLDAMREAAKLLLGTHDFTSFRKAGCQS-KSPVRT 169 (266)
T ss_pred ----------------------------------hcccccccCcCCHHHHHHHHHHccccccchhhccCCCcc-CCCeEE
Confidence 135678888899999999999999999999999864433 378999
Q ss_pred EEEEEEeeeeeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhC-CCCCCCCCCCCCCCceeeeccc
Q 045140 377 IISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQ-KDVNINVPTAPEVGLYLDECIF 455 (468)
Q Consensus 377 I~s~~~~~~~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~-~~~~~~ip~APa~GL~L~~v~y 455 (468)
|+++++.+ .| +++.|+|+|+|||+||||+|||+|++||+|++|.+.+..+|. ++++.++|+|||+||||.+|.|
T Consensus 170 i~~~~v~~----~~-~~i~i~i~g~sFL~~mVR~iVg~l~~vg~g~~~~~~i~~ll~~~~r~~~~~~Apa~GL~L~~v~Y 244 (266)
T COG0101 170 IYRIDVSR----DG-DLIVIDISGNSFLWHMVRNIVGALLLVGRGKRPVEWIKELLEAKDRKLAGPTAPAEGLYLVRVDY 244 (266)
T ss_pred EEEEEEEe----cC-CEEEEEEEeChhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCcccCCCCCCCCccEEEeecc
Confidence 99999875 23 789999999999999999999999999999999999999996 7788999999999999999999
Q ss_pred CCCCccc
Q 045140 456 ASYNKKW 462 (468)
Q Consensus 456 ~~yn~~~ 462 (468)
+.++...
T Consensus 245 ~~~~~~~ 251 (266)
T COG0101 245 PEDFELP 251 (266)
T ss_pred CCccccc
Confidence 8876543
No 4
>PRK00021 truA tRNA pseudouridine synthase A; Validated
Probab=100.00 E-value=1.5e-69 Score=531.53 Aligned_cols=241 Identities=27% Similarity=0.398 Sum_probs=214.8
Q ss_pred cceEEEEEEEeCCCccceeecCCCCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEee--cC
Q 045140 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFC--ID 136 (468)
Q Consensus 59 krkval~i~Y~Gt~Y~G~Q~qp~~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~--id 136 (468)
|++|+|.|+|+||+|+|||+||+.+|||++||+||.+++. +++.|.+||||||||||++|||||++. ++
T Consensus 1 m~~~~l~i~YdGt~y~G~q~q~~~~TVq~~le~aL~~~~~---------~~~~~~~agRTD~GVHA~~qvv~~~~~~~~~ 71 (244)
T PRK00021 1 MMRIALTIEYDGTNFHGWQRQPNGRTVQGELEKALSKLAG---------EPVRVIGAGRTDAGVHALGQVAHFDTPAPRP 71 (244)
T ss_pred CeEEEEEEEECCCccceeeeCCCCCCHHHHHHHHHHHHhC---------CCeEEEEEccCCCcccccCcEEEEEeCCCCC
Confidence 6799999999999999999999999999999999999975 568999999999999999999999985 47
Q ss_pred hhHHHHHHhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCCcchhhhhhhhcccc
Q 045140 137 PPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGR 216 (468)
Q Consensus 137 ~~~l~~~LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~ 216 (468)
++.|+..||+.||+||||+++.+|+.+||||++|.+|+|+|+||...+.++ +.
T Consensus 72 ~~~~~~~lN~~Lp~dI~V~~~~~v~~~F~aR~~a~~R~Y~Y~i~~~~~~~~-------~~-------------------- 124 (244)
T PRK00021 72 PEKWRRALNALLPDDIAVLWAEEVPDDFHARFSAKARRYRYRIYNRPARPP-------FL-------------------- 124 (244)
T ss_pred HHHHHHHHHhcCCCCEEEEEeEecCCCcCcCcCCCceEEEEEEecCCCCCh-------hh--------------------
Confidence 889999999999999999999999999999999999999999997543110 00
Q ss_pred ccccccccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCccccccccccccccc
Q 045140 217 KVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSE 296 (468)
Q Consensus 217 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (468)
T Consensus 125 -------------------------------------------------------------------------------- 124 (244)
T PRK00021 125 -------------------------------------------------------------------------------- 124 (244)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccccCCcCCCCCCceEE
Q 045140 297 TVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRY 376 (468)
Q Consensus 297 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnFt~~~~~~d~s~~R~ 376 (468)
..+.|+....+|+++|++|+++|+|+||||||++. +...++++|+
T Consensus 125 ----------------------------------~~~~~~~~~~ld~~~m~~a~~~~~G~HdF~~F~~~-~~~~~~~~R~ 169 (244)
T PRK00021 125 ----------------------------------RGYVWHYPYPLDVDAMNEAAQYLLGEHDFTSFRAS-GCQSKSPVRT 169 (244)
T ss_pred ----------------------------------CCcEEEeCCCCcHHHHHHHHHHhcCceeeeeeeCC-CCCCCCCeEE
Confidence 02467777789999999999999999999999753 3456789999
Q ss_pred EEEEEEeeeeeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhC-CCCCCCCCCCCCCCceeeeccc
Q 045140 377 IISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQ-KDVNINVPTAPEVGLYLDECIF 455 (468)
Q Consensus 377 I~s~~~~~~~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~-~~~~~~ip~APa~GL~L~~v~y 455 (468)
|.++++.. ++ +++.|+|+|+|||+||||+|||+|++||+|+++.+.++.+|. +++...+|+|||+||||++|.|
T Consensus 170 I~~~~v~~----~~-~~~~i~i~g~sFL~~qVR~mvg~l~~vg~g~~~~~~i~~~L~~~~~~~~~~~APa~GL~L~~v~Y 244 (244)
T PRK00021 170 IYEADVTR----EG-DFIVFDISANGFLHNMVRNIVGTLLEVGKGKRPPEDIKELLEAKDRTLAGPTAPAEGLYLVEVDY 244 (244)
T ss_pred EEEEEEEE----cC-CEEEEEEEEchhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCCcccCCCccCCCCCEEeeeEC
Confidence 99999863 34 799999999999999999999999999999999999999985 4555689999999999999988
No 5
>PRK12434 tRNA pseudouridine synthase A; Reviewed
Probab=100.00 E-value=1.9e-69 Score=531.08 Aligned_cols=241 Identities=27% Similarity=0.359 Sum_probs=213.1
Q ss_pred cceEEEEEEEeCCCccceeecCC-CCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEee--c
Q 045140 59 RRKIAIFFAYCGVGYQGMQKNPG-AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFC--I 135 (468)
Q Consensus 59 krkval~i~Y~Gt~Y~G~Q~qp~-~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~--i 135 (468)
|++|+|.|+|+||+|+|||+||+ .+|||++||+||.+++. +++.+.+||||||||||++||+||++. +
T Consensus 1 m~~~~l~i~YdGt~y~G~Q~Q~~~~~TVq~~le~aL~~~~~---------~~~~~~~agRTD~GVHA~~qv~~f~~~~~~ 71 (245)
T PRK12434 1 MRNIKLTIQYDGSRYKGWQKLGNNDNTIQGKIESVLSEMTG---------EEIEIIGCGRTDAGVHALNQVANFQTDEKL 71 (245)
T ss_pred CceEEEEEEECCCccceEeeCCCCCCCHHHHHHHHHHHHhC---------CCeEEEEeccCCCCcCccCcEEEEEcCCCC
Confidence 57899999999999999999995 89999999999999853 468999999999999999999999975 5
Q ss_pred ChhHHHHHHhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCCcchhhhhhhhccc
Q 045140 136 DPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERG 215 (468)
Q Consensus 136 d~~~l~~~LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~~e~~~~~~~~~~~ 215 (468)
+++.|..+||++||+||+|+++.+|+.+||||++|.+|+|+|+|+.....++ +.
T Consensus 72 ~~~~l~~~lN~~LP~dI~V~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~-----------f~--------------- 125 (245)
T PRK12434 72 SEDKIKKYLNEYLPNDIVVTNVEEVDERFHARYNVKSKTYLYKIWNEKFHNV-----------FM--------------- 125 (245)
T ss_pred CHHHHHHHHHccCCCCeEEEEEEECCCCcccccCCCcEEEEEEEccCCCCCh-----------hh---------------
Confidence 7889999999999999999999999999999999999999999986432110 00
Q ss_pred cccccccccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCcccccccccccccc
Q 045140 216 RKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTS 295 (468)
Q Consensus 216 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (468)
T Consensus 126 -------------------------------------------------------------------------------- 125 (245)
T PRK12434 126 -------------------------------------------------------------------------------- 125 (245)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccccCCcCCCCCCceE
Q 045140 296 ETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARR 375 (468)
Q Consensus 296 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnFt~~~~~~d~s~~R 375 (468)
..++|+....+|+++|++|++.|+|+|||+|||+.. ...++++|
T Consensus 126 -----------------------------------~~~~~~~~~~ld~~~m~~a~~~~~G~HDF~~F~~~~-~~~~~~~R 169 (245)
T PRK12434 126 -----------------------------------RKYSMHVNEKLDVKAMKEAAKYLVGSHDFTSFTNAK-SKKKSTVR 169 (245)
T ss_pred -----------------------------------CCeEEEeCCCCCHHHHHHHHHHccCCcCHHhhcCCC-CCCCCCEE
Confidence 134677777899999999999999999999999743 34578999
Q ss_pred EEEEEEEeeeeeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhC-CCCCCCCCCCCCCCceeeecc
Q 045140 376 YIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQ-KDVNINVPTAPEVGLYLDECI 454 (468)
Q Consensus 376 ~I~s~~~~~~~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~-~~~~~~ip~APa~GL~L~~v~ 454 (468)
+|.++++.. + .++|.|+|+|+|||+||||+|||+|++||+|+++.+.++.+|. +++....|+|||+||||++|.
T Consensus 170 ~I~~~~v~~----~-~~~~~i~i~g~~FL~~mVR~mvg~ll~vg~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~L~~V~ 244 (245)
T PRK12434 170 EIYSIDIME----E-DGFVQIRVSGNGFLHNMVRIIVGALIEVGLGQLKAEDIKQILEAKDRNQANCTAPASGLYLENVE 244 (245)
T ss_pred EEEEEEEEE----e-CCEEEEEEEecHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcCCcccCCCccCCCCCEEeEeE
Confidence 999998753 2 3699999999999999999999999999999999999999885 566678899999999999998
Q ss_pred c
Q 045140 455 F 455 (468)
Q Consensus 455 y 455 (468)
|
T Consensus 245 Y 245 (245)
T PRK12434 245 Y 245 (245)
T ss_pred C
Confidence 8
No 6
>PRK14588 tRNA pseudouridine synthase ACD; Provisional
Probab=100.00 E-value=2.9e-69 Score=536.83 Aligned_cols=251 Identities=26% Similarity=0.362 Sum_probs=218.2
Q ss_pred cceEEEEEEEeCCCccceeecCCCCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEee--cC
Q 045140 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFC--ID 136 (468)
Q Consensus 59 krkval~i~Y~Gt~Y~G~Q~qp~~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~--id 136 (468)
|++|+|.|+||||+|+|||+||+.+|||++||+||.++.. +++.|.+||||||||||+|||+||++. ++
T Consensus 1 m~~~~l~iaYdGt~f~G~Q~Q~~~~TVq~~Le~aL~~l~~---------~~i~i~~AgRTDaGVHA~gQv~~f~~~~~~~ 71 (272)
T PRK14588 1 MRTIALLLEYDGTDFAGSQWQTDGRTVQGALEAAWQALTQ---------ERRRIVLAGRTDAGVHARGQVAHVQTDTRHS 71 (272)
T ss_pred CceEEEEEEEcCCceeeeEECCCCCCHHHHHHHHHHHhhC---------CCceEEEecCCCcCcCccccEEEEEcCCCCC
Confidence 5799999999999999999999999999999999999853 468899999999999999999999974 56
Q ss_pred hhHHHHHHhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCCcchhhhhhhhcccc
Q 045140 137 PPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGR 216 (468)
Q Consensus 137 ~~~l~~~LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~ 216 (468)
++.|...||++||+||+|+++.+|+.+||||++|.+|+|+|+|+.... +.+ ++
T Consensus 72 ~~~l~~~LN~~LP~dI~V~~v~~v~~~FhaR~~a~~R~Y~Y~i~~~~~-~~p------~~-------------------- 124 (272)
T PRK14588 72 LATIWRGLNAHLPEDIGVQNAWEAPPDFHARFSAIQREYRYVIDCAPA-PSP------QL-------------------- 124 (272)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEECCCCcCcccCCCcEEEEEEEcCCCC-CCh------hh--------------------
Confidence 789999999999999999999999999999999999999999986321 100 00
Q ss_pred ccccccccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCccccccccccccccc
Q 045140 217 KVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSE 296 (468)
Q Consensus 217 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (468)
T Consensus 125 -------------------------------------------------------------------------------- 124 (272)
T PRK14588 125 -------------------------------------------------------------------------------- 124 (272)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccccCCcCCCCCCceEE
Q 045140 297 TVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRY 376 (468)
Q Consensus 297 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnFt~~~~~~d~s~~R~ 376 (468)
..+.||....+|+++|++|+++|+|+|||+|||+. ...++++|+
T Consensus 125 ----------------------------------~~~~~~~~~~lDi~~m~~a~~~f~G~HDF~~F~~~--~~~~~~vRt 168 (272)
T PRK14588 125 ----------------------------------RHQVLHYAGTLDVAAMDAALKLLIGTHDFAAFTTA--PQEGSTVRT 168 (272)
T ss_pred ----------------------------------cCceEecCCCCCHHHHHHHHHHccCCcchHhhcCC--CCCCCCeEE
Confidence 13467777789999999999999999999999975 346789999
Q ss_pred EEEEEEeeeeeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHh-CCCCCCCCCCCCCCCceeeeccc
Q 045140 377 IISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETAL-QKDVNINVPTAPEVGLYLDECIF 455 (468)
Q Consensus 377 I~s~~~~~~~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l-~~~~~~~ip~APa~GL~L~~v~y 455 (468)
|.++++.... ..+.++|.|+|+|+|||+||||+|||+|++||+|+++.+.+..+| .+++...+|+|||+||||.+|.|
T Consensus 169 I~~~~~~~~~-~~~~~~i~~~i~g~~FL~~mVR~mVg~ll~vg~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~L~~V~Y 247 (272)
T PRK14588 169 CYWARCTDTE-WFGRPLLAIEVAANAFLQHMVRNIVGTLLLVGRGRMTVDQFGAVLASRDRRLAGPTAPAHGLYLTAVRY 247 (272)
T ss_pred EEEEEEEEcc-cCCCCEEEEEEEEchhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCCcccCCCCCCCCCcEEeeEec
Confidence 9999986421 123478999999999999999999999999999999988888888 46778899999999999999999
Q ss_pred CCCCccc
Q 045140 456 ASYNKKW 462 (468)
Q Consensus 456 ~~yn~~~ 462 (468)
++..-+|
T Consensus 248 ~~~~~~~ 254 (272)
T PRK14588 248 PPGLIRW 254 (272)
T ss_pred Cchhccc
Confidence 8755444
No 7
>PRK14586 tRNA pseudouridine synthase ACD; Provisional
Probab=100.00 E-value=1.5e-68 Score=524.76 Aligned_cols=241 Identities=25% Similarity=0.355 Sum_probs=211.0
Q ss_pred cceEEEEEEEeCCCccceeecCCCCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEee---c
Q 045140 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFC---I 135 (468)
Q Consensus 59 krkval~i~Y~Gt~Y~G~Q~qp~~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~---i 135 (468)
|++|+|.|+|+||+|+|||+||+.+|||++||+||.++.. +++.|.+||||||||||++||+||++. +
T Consensus 1 m~~~~l~i~YdGt~f~G~Q~Q~~~~TVq~~le~aL~~~~~---------~~i~~~~agRTD~GVHA~~qv~~f~~~~~~~ 71 (245)
T PRK14586 1 MKRVAAVVSYDGSNFFGYQGQPDVRTVQGVFEDALERIFK---------QRIYTQAAGRTDTGVHANGQVIAFNCPNDRM 71 (245)
T ss_pred CeEEEEEEEEcCCceeeEEECCCCCCHHHHHHHHHHHHhC---------CCeeEEEecCCccCCCccCcEEEEEecCCcC
Confidence 5799999999999999999999999999999999999853 568999999999999999999999975 5
Q ss_pred ChhHHHHHHhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCCcchhhhhhhhccc
Q 045140 136 DPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERG 215 (468)
Q Consensus 136 d~~~l~~~LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~~e~~~~~~~~~~~ 215 (468)
++..|..+||++||+||+|+++.+|+.+||||++|.+|+|+|+|+.... + ++ +.
T Consensus 72 ~~~~l~~~lN~~LP~dI~V~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~-~----~~--f~------------------- 125 (245)
T PRK14586 72 TEEDIKNAMNANLPDDIYVKKVFEVPKNFHPRFDAKKRIYHYFILTSKE-K----NV--FL------------------- 125 (245)
T ss_pred CHHHHHHHHHccCCCCeEEEEEEECCCCcCcccCCCcEEEEEEEecCCC-C----Ch--hh-------------------
Confidence 7889999999999999999999999999999999999999999985321 0 00 00
Q ss_pred cccccccccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCcccccccccccccc
Q 045140 216 RKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTS 295 (468)
Q Consensus 216 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (468)
T Consensus 126 -------------------------------------------------------------------------------- 125 (245)
T PRK14586 126 -------------------------------------------------------------------------------- 125 (245)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccccCCcCCCCCCceE
Q 045140 296 ETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARR 375 (468)
Q Consensus 296 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnFt~~~~~~d~s~~R 375 (468)
..+.||...++|+++|++|+++|+|+|||+||+. +...++++|
T Consensus 126 -----------------------------------~~~~~~~~~~ld~~~m~~a~~~l~G~HDF~~F~~--~~~~~~~vR 168 (245)
T PRK14586 126 -----------------------------------RKYVWWFPYELDLEAMRKAAKYLEGEHDFTSFKT--GSDERNPVR 168 (245)
T ss_pred -----------------------------------CCceEEeCCCCCHHHHHHHHHHccCcchHHhhcC--CCCCCCCcE
Confidence 1346777778999999999999999999999933 234567999
Q ss_pred EEEEEEEeeeeeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHh-CCCCCCCCCCCCCCCceeeecc
Q 045140 376 YIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETAL-QKDVNINVPTAPEVGLYLDECI 454 (468)
Q Consensus 376 ~I~s~~~~~~~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l-~~~~~~~ip~APa~GL~L~~v~ 454 (468)
+|+++++.+ ..+ ++|.|+|+|+|||+||||+|||+|++||+|+++.+.+..+| .+++....|+|||+||||.+|.
T Consensus 169 ~I~~~~~~~---~~~-~~i~~~i~g~~FL~~mVR~mvg~l~~vg~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~L~~v~ 244 (245)
T PRK14586 169 TIYRIRILR---LKK-DLILIRVEGRSFLRRMVRNIVGALVKVGLGQWEPEKIKEVLEARDRSKAAGTAPAHGLYLYKVL 244 (245)
T ss_pred EEEEEEEEE---ccC-CEEEEEEEechhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcCCcccCCCccCCCCCEEeEeE
Confidence 999998753 123 68999999999999999999999999999999988888888 4667778999999999999998
Q ss_pred c
Q 045140 455 F 455 (468)
Q Consensus 455 y 455 (468)
|
T Consensus 245 f 245 (245)
T PRK14586 245 F 245 (245)
T ss_pred C
Confidence 7
No 8
>cd02570 PseudoU_synth_EcTruA PseudoU_synth_EcTruA: Pseudouridine synthase, Escherichia coli TruA like. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.
Probab=100.00 E-value=1.1e-67 Score=516.65 Aligned_cols=236 Identities=28% Similarity=0.397 Sum_probs=208.0
Q ss_pred EEEEEeCCCccceeecCCCCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEee--cChhHHH
Q 045140 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFC--IDPPGLV 141 (468)
Q Consensus 64 l~i~Y~Gt~Y~G~Q~qp~~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~--id~~~l~ 141 (468)
|.|+|+||+|+|||+||+.+|||++||+||.+++. +++.|.+||||||||||++||+||++. ++++.|+
T Consensus 1 l~i~Y~Gt~f~G~q~q~~~~TVq~~le~aL~~~~~---------~~~~i~~agRTD~GVHA~~qvv~~~~~~~~~~~~~~ 71 (239)
T cd02570 1 LTIEYDGTNFSGWQRQPNGRTVQGELEKALSKIAG---------EPVRVIGAGRTDAGVHALGQVAHFDTPSEIPLEKLI 71 (239)
T ss_pred CEEEEeCCccceeeeCCCCCCHHHHHHHHHHHHhC---------CCeEEEEECcCCCCcCccccEEEEEECCCCCHHHHH
Confidence 57999999999999999999999999999999974 578999999999999999999999986 4678899
Q ss_pred HHHhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCCcchhhhhhhhccccccccc
Q 045140 142 ERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGV 221 (468)
Q Consensus 142 ~~LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~k~~~~ 221 (468)
..||+.||+||+|+++.+|+.+||||++|.+|+|+|+||.....++ +.
T Consensus 72 ~~lN~~Lp~dI~v~~i~~v~~~F~aR~~a~~R~Y~Y~i~~~~~~~~-------~~------------------------- 119 (239)
T cd02570 72 KALNSLLPPDIRVLSAEEVPDDFHARFSAKSRTYRYRILNRPVPSP-------FL------------------------- 119 (239)
T ss_pred HHHHccCCCCEEEEEEEECCCCcCcccCCCceEEEEEEccCCCCCh-------hh-------------------------
Confidence 9999999999999999999999999999999999999987431110 00
Q ss_pred cccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCcccccccccccccccccccc
Q 045140 222 MGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNE 301 (468)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 301 (468)
T Consensus 120 -------------------------------------------------------------------------------- 119 (239)
T cd02570 120 -------------------------------------------------------------------------------- 119 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccccCCcCCCCCCceEEEEEEE
Q 045140 302 NTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFG 381 (468)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnFt~~~~~~d~s~~R~I~s~~ 381 (468)
..+.|+...++|+++|++|+++|+|+|||||||+..+ .+++++|+|.+++
T Consensus 120 -----------------------------~~~~~~~~~~~d~~~m~~a~~~f~G~HdF~~F~~~~~-~~~~~~R~I~~~~ 169 (239)
T cd02570 120 -----------------------------RRYVWHVPRPLDIEAMQEAAKLLLGTHDFSSFRAAGC-QSKSTVRTIYRAD 169 (239)
T ss_pred -----------------------------CCeEEEeCCCCCHHHHHHHHHHccCCcchhhhCCCCC-CCCCCeEEEEEEE
Confidence 0245666678899999999999999999999997543 3578999999998
Q ss_pred EeeeeeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhC-CCCCCCCCCCCCCCceeeeccc
Q 045140 382 ADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQ-KDVNINVPTAPEVGLYLDECIF 455 (468)
Q Consensus 382 ~~~~~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~-~~~~~~ip~APa~GL~L~~v~y 455 (468)
+.+ . .+++.|+|+|+|||+||||+|||+|++||+|+++++.++.+|. +++...+|+|||+||||++|.|
T Consensus 170 v~~----~-~~~~~i~i~g~sFL~~qVR~mvg~ll~vg~g~~~~~~i~~~l~~~~~~~~~~~APa~GL~L~~v~Y 239 (239)
T cd02570 170 VYR----E-GDLIVFEIRANGFLYHMVRNIVGTLLEVGRGKLSPEDIKEILEAKDRTAAGPTAPAHGLYLVKVEY 239 (239)
T ss_pred EEE----e-CCEEEEEEEEcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCCcccCCCCcCCCCCEEeeeEC
Confidence 863 2 3799999999999999999999999999999999999999985 4455669999999999999987
No 9
>TIGR00071 hisT_truA pseudouridylate synthase I. universal so far, single copy in all prokaryotes, 3 in yeast. Trusted cutoff for orthology is about 100 based on 1 match only in complete prokaryote with length 200.
Probab=100.00 E-value=5.5e-67 Score=508.32 Aligned_cols=224 Identities=33% Similarity=0.543 Sum_probs=201.4
Q ss_pred ceEEEEEEEeCCCccceeecCCCCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEee--cCh
Q 045140 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFC--IDP 137 (468)
Q Consensus 60 rkval~i~Y~Gt~Y~G~Q~qp~~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~--id~ 137 (468)
++|+|.|+|+||+|+|||+||+.+|||++||+||.+++. +++.|.+|||||+||||++||+||++. +++
T Consensus 1 ~~~~l~i~YdGt~f~G~Q~Q~~~~TVq~~le~aL~~~~~---------~~i~~~~agRTD~GVHA~~qv~~f~~~~~~~~ 71 (227)
T TIGR00071 1 RKIALKIAYDGSNYHGWQRQPNKRTVQGELEKALEAIGK---------KKITIMSAGRTDKGVHAMGQVISFDTPKEIPD 71 (227)
T ss_pred CeEEEEEEEcCCCeeEEeECcCCCCHHHHHHHHHHHHhC---------CCeeEEeeccCcCCccccccEEEEEecCCCCH
Confidence 479999999999999999999999999999999999974 579999999999999999999999985 477
Q ss_pred hHHHHHHhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCCcchhhhhhhhccccc
Q 045140 138 PGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRK 217 (468)
Q Consensus 138 ~~l~~~LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~k 217 (468)
+.|...||++||+||+|+++.+|+.+||||++|.+|+|+|+|+...
T Consensus 72 ~~~~~~lN~~Lp~dI~V~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~---------------------------------- 117 (227)
T TIGR00071 72 NKLNAKLNALLPPDIRVKALAPVNDNFHARFSASKRHYRYILYNHR---------------------------------- 117 (227)
T ss_pred HHHHHHHHccCCCCEEEEEEEeCCCCcCCCCCCCcEEEEEEEccCc----------------------------------
Confidence 8899999999999999999999999999999999999999998421
Q ss_pred cccccccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCcccccccccccccccc
Q 045140 218 VIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSET 297 (468)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (468)
T Consensus 118 -------------------------------------------------------------------------------- 117 (227)
T TIGR00071 118 -------------------------------------------------------------------------------- 117 (227)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccccCCcCCCCCCceEEE
Q 045140 298 VQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYI 377 (468)
Q Consensus 298 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnFt~~~~~~d~s~~R~I 377 (468)
+....+|+++|++|+++|+|+|||+|||+.. ...++++|+|
T Consensus 118 --------------------------------------~~~~~ld~~~m~~a~~~~~G~HDF~~F~~~~-~~~~~~~R~i 158 (227)
T TIGR00071 118 --------------------------------------HYYSPLDLEKMRAAAKQLLGKHDFSNFSKAK-SKSRSPIRTI 158 (227)
T ss_pred --------------------------------------ccCCCCCHHHHHHHHHHccCcccHHHhcCCC-CCCCCCeEEE
Confidence 0012467999999999999999999999743 4467899999
Q ss_pred EEEEEeeeeeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhC-CCCCCCCCCCCCCCcee
Q 045140 378 ISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQ-KDVNINVPTAPEVGLYL 450 (468)
Q Consensus 378 ~s~~~~~~~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~-~~~~~~ip~APa~GL~L 450 (468)
.++++.+ +.+++.|+|+|+|||+||||+|||+|++||+|+++.+.++.+|. +++....|+|||+||||
T Consensus 159 ~~~~v~~-----~~~~~~i~i~g~~FL~~mVR~mvg~l~~vg~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~L 227 (227)
T TIGR00071 159 SDIKVSE-----SGEYIIFDIIGNSFLWHMVRKIVGALVLVGRGKLPPEWVAKLLDAKKRNLAPTTAPANGLYL 227 (227)
T ss_pred EEEEEEE-----cCCEEEEEEEecHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCCcccCCCCCCCCCCcC
Confidence 9998863 34799999999999999999999999999999999999999995 45667889999999998
No 10
>cd02568 PseudoU_synth_PUS1_PUS2 PseudoU_synth_PUS1_PUS2: Pseudouridine synthase, PUS1/ PUS2 like. This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus1p, S. cerevisiae Pus2p, Caenorhabditis elegans Pus1p and human PUS1. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae Pus1p catalyzes the formation of psi34 and psi36 in the intron-containing tRNAIle, psi35 in the intron-containing tRNATyr, psi27 and/or psi28 in several yeast cytoplasmic tRNAs and, psi44 in U2 small nuclear RNA (U2 snRNA). The presence of the intron is required for the formation of psi 34, 35 and 36. In addition S. cerevisiae PUS1 makes are psi 26, 65 and 67. C. elegans Pus1p does not modify psi44 in U2 snRNA. Mouse Pus1p makes psi27/28 in pre- tRNASer , tRNAVal and tRNAIle, psi 34/36 in tRNAIle and, psi 32 and potentially 67 in tRNAVal. Psi44 in U
Probab=100.00 E-value=3.9e-67 Score=514.53 Aligned_cols=236 Identities=57% Similarity=0.945 Sum_probs=212.4
Q ss_pred EEEEEeCCCccceeecCCC-CCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEeec--C----
Q 045140 64 IFFAYCGVGYQGMQKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCI--D---- 136 (468)
Q Consensus 64 l~i~Y~Gt~Y~G~Q~qp~~-~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~i--d---- 136 (468)
|+|+|+||+|+|||+||+. +|||++||+||.+++.+++.|.+.++++.|.+|||||+||||++||+||++.. +
T Consensus 1 l~i~Y~Gt~f~G~Q~Q~~~~~TVq~~le~aL~~~~~~~~~~~~~~~~~~~~~agRTD~GVHA~~qv~~~~~~~~~~~~~~ 80 (245)
T cd02568 1 LLFGYCGTGYHGMQYNPGNYKTIEGELERALVKAGAISESNAGDPKKIGFSRAARTDKGVHAARNVVSLKVIIDDPEGLG 80 (245)
T ss_pred CEEEEeCCCccccccCCCCCCChHHHHHHHHHHcCCcCccccCChhhcceeeecccccchhheeeEEEEEEecccccccc
Confidence 5799999999999999998 99999999999999999887777788999999999999999999999999864 4
Q ss_pred -hhHHHHHHhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCCcchhhhhhhhccc
Q 045140 137 -PPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERG 215 (468)
Q Consensus 137 -~~~l~~~LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~~e~~~~~~~~~~~ 215 (468)
+..+..+||++||+||+|+++.+|+.+||||++|.+|+|+|+||...
T Consensus 81 ~~~~~~~~lN~~Lp~dI~v~~~~~v~~~F~aR~~a~~R~Y~Y~i~~~~-------------------------------- 128 (245)
T cd02568 81 IGEDLVEKLNSHLPEDIRVFGITRVTKSFNARKACDSRTYEYLLPTFA-------------------------------- 128 (245)
T ss_pred chHHHHHHHHccCCCceEEEEEEcCCCCCCcchhhhcceeEEECCccc--------------------------------
Confidence 67899999999999999999999999999999999999999997410
Q ss_pred cccccccccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCcccccccccccccc
Q 045140 216 RKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTS 295 (468)
Q Consensus 216 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (468)
T Consensus 129 -------------------------------------------------------------------------------- 128 (245)
T cd02568 129 -------------------------------------------------------------------------------- 128 (245)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccccCCcCCCCCCceE
Q 045140 296 ETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARR 375 (468)
Q Consensus 296 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnFt~~~~~~d~s~~R 375 (468)
+ +|+++|++|+++|+|+|||+|||+......++++|
T Consensus 129 ----------------------------------------~----~d~~~m~~a~~~~~G~HdF~~F~~~~~~~~~~~~R 164 (245)
T cd02568 129 ----------------------------------------L----ETLDRFNEILKLYVGTHNFHNFTVRKKFEDPSANR 164 (245)
T ss_pred ----------------------------------------H----hHHHHHHHHHHHhhCccccccCcccccccCCCcee
Confidence 0 47889999999999999999999865445678999
Q ss_pred EEEEEEEeeeeee-cCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCCCCCCCCCCCCceeeecc
Q 045140 376 YIISFGADSVVNV-EGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECI 454 (468)
Q Consensus 376 ~I~s~~~~~~~~~-~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~~~~~~~ip~APa~GL~L~~v~ 454 (468)
+|.++++...... .+.++|.|+|+|+|||+||||+|||+|++||+|.++++.++.+|.+++...+|+|||+||||.+|.
T Consensus 165 ~i~~~~~~~~~~~~~~~~~i~i~i~g~~FL~~mVR~mvg~l~~vg~g~~~~~~i~~~L~~~~~~~~~~APa~GL~L~~v~ 244 (245)
T cd02568 165 FIISFYVSEPFVIEEGLEWVSIEIHGQSFMLHQIRKMIGLAIAIVRGGAPESLIDLSFNKAKRIIIPLAPGLGLLLEYPH 244 (245)
T ss_pred EEEEEEEecceeecCCccEEEEEEEechHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcccccccccCCCCcceeEeccc
Confidence 9999998743221 234799999999999999999999999999999999999999998777777899999999999998
Q ss_pred c
Q 045140 455 F 455 (468)
Q Consensus 455 y 455 (468)
|
T Consensus 245 y 245 (245)
T cd02568 245 F 245 (245)
T ss_pred C
Confidence 7
No 11
>PRK14589 tRNA pseudouridine synthase ACD; Provisional
Probab=100.00 E-value=1.9e-66 Score=514.30 Aligned_cols=226 Identities=29% Similarity=0.385 Sum_probs=203.3
Q ss_pred eEEEEEEEeCCCccceeecCCCCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEeecChhHH
Q 045140 61 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGL 140 (468)
Q Consensus 61 kval~i~Y~Gt~Y~G~Q~qp~~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~id~~~l 140 (468)
+|+|.|+|+||+|+|||+||+.+|||++||+||.+++.+.. .+++.|.+||||||||||++||+||++.. ++.+
T Consensus 2 ~~~l~i~YdGt~y~G~Q~Q~~~~TVq~~Le~aL~~~~~~~~-----~~~~~i~~agRTDaGVHA~gqv~~f~~~~-~~~~ 75 (265)
T PRK14589 2 RLAFRISYIGTRFFGSQYQPDQRTVEGEFIAACRRLGLFSD-----WREAGFALAGRTDRGVHARGQVLAFSTHK-PERA 75 (265)
T ss_pred cEEEEEEEcCCCeeeeeeCCCCCCHHHHHHHHHHHhhCccC-----CceeeEEEeccCCcCccccccEEEEEeCC-hHHH
Confidence 79999999999999999999999999999999999987641 35789999999999999999999998754 6789
Q ss_pred HHHHhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCCcchhhhhhhhcccccccc
Q 045140 141 VERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIG 220 (468)
Q Consensus 141 ~~~LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~k~~~ 220 (468)
+..||++||+||+|+++.+|+.+||||++|.+|+|+|+|+..
T Consensus 76 ~~~lN~~LP~dI~V~~~~~v~~~FhAR~~a~~R~Y~Y~i~~~-------------------------------------- 117 (265)
T PRK14589 76 VEALNGQLPPDIWCTGWAEVPESFHPRYDAISRTYRYYFSRP-------------------------------------- 117 (265)
T ss_pred HHHHHhhCCCCeEEEEEEEcCCCCCcccCCceeEEEEEEecC--------------------------------------
Confidence 999999999999999999999999999999999999999520
Q ss_pred ccccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCccccccccccccccccccc
Q 045140 221 VMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQN 300 (468)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (468)
T Consensus 118 -------------------------------------------------------------------------------- 117 (265)
T PRK14589 118 -------------------------------------------------------------------------------- 117 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccccCCcCCCCCCceEEEEEE
Q 045140 301 ENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISF 380 (468)
Q Consensus 301 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnFt~~~~~~d~s~~R~I~s~ 380 (468)
++|+++|++|++.|+|+|||+|||+.. .++++|+|.++
T Consensus 118 ---------------------------------------~lD~~~m~~a~~~f~G~HDF~~F~~~~---~~~~vRtI~~i 155 (265)
T PRK14589 118 ---------------------------------------PSDINAMRDAAGEFIGTHDFSCFARVE---GKSPVRTILRI 155 (265)
T ss_pred ---------------------------------------ccHHHHHHHHHHHccCCccHHHHhccC---CCCCeEEEEEE
Confidence 146889999999999999999999753 56789999999
Q ss_pred EEeeeeeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCCCCCCCCCCCCceeeecccCC
Q 045140 381 GADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFAS 457 (468)
Q Consensus 381 ~~~~~~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~~~~~~~ip~APa~GL~L~~v~y~~ 457 (468)
++.. + .+++.|+|+|+|||+||||+|||+|++||+|+++++.++.+|....+..+|+|||+||||.+|.|+.
T Consensus 156 ~v~~----~-~~~~~~~i~G~~FL~~mVR~mVG~ll~vg~G~~~~~~i~~~L~~~~r~~~~~APa~GL~L~~V~Y~~ 227 (265)
T PRK14589 156 RVFS----D-GGFPVFEVTAQSFLWHMVRCMAGALLQIGEGEMEPDDIERLLSGPCKRKVKPAPAEGLVLWDVDCGL 227 (265)
T ss_pred EEEE----e-CCEEEEEEEechhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCcCCCCCCccCCCCcEEeeeecCC
Confidence 8763 2 3689999999999999999999999999999999999999996444456899999999999999974
No 12
>cd00497 PseudoU_synth_TruA_like PseudoU_synth_TruA: Pseudouridine synthase, TruA family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruA, Saccharomyces cerevisiae Pus1p, S. cerevisiae Pus3p Caenorhabditis elegans Pus1p and human PUS1. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae PUS1 catalyzes the formation of psi34 and psi36 in the intron containing tRNAIle, psi35 in the intron containing tRNATyr, psi27 and/or psi28 in several yeast cytoplasmic tRNAs and, psi44 in U2 small nuclear RNA (U2 snRNA). The presence of the intron is required for the formation of psi 34, 35 and 36. In addition S. cerevisiae PUS1 makes psi 26, 65 and 67. C. elegans Pus1p does not modify psi44 in U2 snRNA. S. cerevisiae Pus3p makes psi38 and psi39 in tRNAs. Psi44 in U2 snRNA and, psi38 and psi39 in tRNAs are highly ph
Probab=100.00 E-value=5.1e-66 Score=500.64 Aligned_cols=222 Identities=33% Similarity=0.532 Sum_probs=197.7
Q ss_pred EEEeCCCccceeecCCCCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEeecChhHHHHHHh
Q 045140 66 FAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLN 145 (468)
Q Consensus 66 i~Y~Gt~Y~G~Q~qp~~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~id~~~l~~~LN 145 (468)
|+|+||+|+|||+||+.+|||++||+||.+++.+.+ ++++.|.+||||||||||++||+||++..+.+.+...||
T Consensus 1 i~YdGt~f~G~Q~Q~~~~TVq~~le~aL~~~~~~~~-----~~~~~i~~agRTD~GVHA~~qv~~~~~~~~~~~~~~~lN 75 (224)
T cd00497 1 IAYDGWKYHGFQRQPDVPTVEGELFKALLKTGLIES-----PKPSNYSRAGRTDKGVSALGQVVSLETRSKLKPYPDILN 75 (224)
T ss_pred CEEcCCceeeEeeCcCCCCHHHHHHHHHHHhhCcCC-----CcceeEEEeccccccccccccEEEEEECCCcHHHHHHHH
Confidence 689999999999999999999999999999987542 457999999999999999999999998765457999999
Q ss_pred hcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCCcchhhhhhhhccccccccccccc
Q 045140 146 SNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKR 225 (468)
Q Consensus 146 ~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~k~~~~~~~~ 225 (468)
++||+||+|+++.+|+.+||||++|.+|+|+|+|+..
T Consensus 76 ~~Lp~dI~v~~~~~v~~~F~aR~~a~~R~Y~Y~i~~~------------------------------------------- 112 (224)
T cd00497 76 GLLPKDIRVLAWAPVPEDFHARFSCVSRTYRYYFPGG------------------------------------------- 112 (224)
T ss_pred hhCCCCcEEEEEEEeCCCCCCCcccCeEEEEEEECCC-------------------------------------------
Confidence 9999999999999999999999999999999999741
Q ss_pred cccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCcccccccccccccccccccccccc
Q 045140 226 TYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDL 305 (468)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 305 (468)
T Consensus 113 -------------------------------------------------------------------------------- 112 (224)
T cd00497 113 -------------------------------------------------------------------------------- 112 (224)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccccCCcCCCCCCceEEEEEEEEeee
Q 045140 306 SLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSV 385 (468)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnFt~~~~~~d~s~~R~I~s~~~~~~ 385 (468)
.+|+++|++|++.|+|+|||+|||+..+. .++++|+|.++++.+
T Consensus 113 ----------------------------------~~d~~~m~~a~~~f~G~HDF~~F~~~~~~-~~~~~RtI~~~~v~~- 156 (224)
T cd00497 113 ----------------------------------DLDIEAMREAAKLLLGTHDFRNFCKKDGR-KKNPVRTIISAEVEE- 156 (224)
T ss_pred ----------------------------------CcCHHHHHHHHHHccCcccHHHhcCCCCC-CCCCeEEEEEEEEEe-
Confidence 13588899999999999999999975433 378999999999864
Q ss_pred eeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCCCC--CCCCCCCCceeeeccc
Q 045140 386 VNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNIN--VPTAPEVGLYLDECIF 455 (468)
Q Consensus 386 ~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~~~~~~~--ip~APa~GL~L~~v~y 455 (468)
. .+++.|+|.|+|||+||||+|||+|++|++|+++.+.+..+|....+.. .|+|||+||||++|.|
T Consensus 157 ---~-~~~~~i~i~g~sFL~~mVR~mvg~ll~vg~g~~~~~~i~~~l~~~~~~~~~~~~APa~GL~L~~V~Y 224 (224)
T cd00497 157 ---V-DDFYVFEVKGKSFLWHQVRRIVAALFLVGQGLEPPSIISRLLDEEKRPSKPQYPAPPEPLVLWDCKY 224 (224)
T ss_pred ---c-CCEEEEEEEEcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcCCcccCCCCcCCCCCcEEeeeeC
Confidence 2 2799999999999999999999999999999999999999996433333 3499999999999987
No 13
>cd02866 PseudoU_synth_TruA_Archea PseudoU_synth_archea: Pseudouridine synthase,. This group consists of archealpseudouridine synthases.Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. This group of proteins make Psedouridine in tRNAs.
Probab=100.00 E-value=6.1e-66 Score=499.10 Aligned_cols=220 Identities=28% Similarity=0.473 Sum_probs=195.9
Q ss_pred EEEEEeCCCccceeecCCCCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEeecChhHHHHH
Q 045140 64 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVER 143 (468)
Q Consensus 64 l~i~Y~Gt~Y~G~Q~qp~~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~id~~~l~~~ 143 (468)
|.|+|+||+|+|||+||+.+|||++||+||.+++.+++ ++++.|.+||||||||||++||+||++.... +..+
T Consensus 1 l~i~Y~Gt~y~G~q~q~~~~TVq~~le~aL~~~~~~~~-----~~~i~~~~agRTD~GVHA~~qv~~f~~~~~~--~~~~ 73 (221)
T cd02866 1 LKVAYDGTPYHGFQRQPDVRTVEGELIKALRRLGIIES-----PKRPRLYSAGRTDAGVSALGNVVAFETEKEL--TPPA 73 (221)
T ss_pred CEEEEeCCceeeeeeCCCCCCHHHHHHHHHHHhhcccc-----CCceEEEEEcCCccccCccccEEEEEeCcHH--HHHH
Confidence 57999999999999999999999999999999987652 3579999999999999999999999875432 8899
Q ss_pred HhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCCcchhhhhhhhccccccccccc
Q 045140 144 LNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMG 223 (468)
Q Consensus 144 LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~k~~~~~~ 223 (468)
||++||+||+|+++.+|+.+||||++|.+|+|+|+||..
T Consensus 74 lN~~LP~dI~v~~~~~v~~~F~ar~~a~~r~Y~Y~i~~~----------------------------------------- 112 (221)
T cd02866 74 INNALPKDIRVWAWAKVPEDFHPRRDARRRYYRYYLGAE----------------------------------------- 112 (221)
T ss_pred HHhhCCCCEEEEEEEEeCCCCCCCccCCeEEEEEEECCC-----------------------------------------
Confidence 999999999999999999999999999999999999741
Q ss_pred cccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCcccccccccccccccccccccc
Q 045140 224 KRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENT 303 (468)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 303 (468)
T Consensus 113 -------------------------------------------------------------------------------- 112 (221)
T cd02866 113 -------------------------------------------------------------------------------- 112 (221)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccccCCcCCCCCCceEEEEEEEEe
Q 045140 304 DLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGAD 383 (468)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnFt~~~~~~d~s~~R~I~s~~~~ 383 (468)
++|+++|++|++.|+|+|||+|||+..+ .+++|+|.++++.
T Consensus 113 ------------------------------------~ld~~~m~~a~~~~~G~HDF~~F~~~~~---~~~~R~I~~~~~~ 153 (221)
T cd02866 113 ------------------------------------DYDVEAMAEAAKKLIGTHDFSNFSKRDG---RDPVRTIERIEIR 153 (221)
T ss_pred ------------------------------------cCCHHHHHHHHHHhcCCcCHHHhhCCCC---CCCcEEEEEEEEE
Confidence 1357889999999999999999997432 3789999999875
Q ss_pred eeeeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhCC-CCCCCCCCCCCCCceeeeccc
Q 045140 384 SVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQK-DVNINVPTAPEVGLYLDECIF 455 (468)
Q Consensus 384 ~~~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~~-~~~~~ip~APa~GL~L~~v~y 455 (468)
+ + .+++.|+|+|+|||+||||+|||+|++||+|+++.+.++.+|.. ++....++|||+||||++|.|
T Consensus 154 ~----~-~~~~~~~i~g~~FL~~mVR~mvg~ll~vg~g~~~~~~i~~~l~~~~~~~~~~~APa~GL~L~~v~Y 221 (221)
T cd02866 154 E----N-GEFLVIDVVGESFLWNMVRRIVGALSLVGKGKRENEWVDKLLDGEFRKKDGVPAPPEGLILVDVKY 221 (221)
T ss_pred E----c-CCEEEEEEEEcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCcccCCCCCCCCCcEEEEeeC
Confidence 3 2 37999999999999999999999999999999999999999964 444445699999999999987
No 14
>cd02569 PseudoU_synth_ScPus3 PseudoU_synth_ScPus3-like: Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like. This group consists of eukaryotic pseudouridine synthases similar to S. cerevisiae Pus3p, mouse Pus3p and, human PUS2. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae Pus3p makes psi38 and psi39 in tRNAs. Mouse Pus3p has been shown to makes psi38 and, possibly also psi 39, in tRNAs. Psi38 and psi39 are highly conserved in tRNAs from eubacteria, archea and eukarya.
Probab=100.00 E-value=1.9e-65 Score=505.37 Aligned_cols=230 Identities=30% Similarity=0.470 Sum_probs=198.5
Q ss_pred EEEEEeCCCccceeecCC-CCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEee--cChh--
Q 045140 64 IFFAYCGVGYQGMQKNPG-AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFC--IDPP-- 138 (468)
Q Consensus 64 l~i~Y~Gt~Y~G~Q~qp~-~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~--id~~-- 138 (468)
|.|+|+||+|+|||+||+ .+|||++||+||.+++.|.+ .+++.|.+||||||||||++||+||++. ++++
T Consensus 1 l~i~YdGt~y~G~Q~Q~~~~~TVq~~Le~aL~~~~~i~~-----~~~~~~~~agRTD~GVHA~~qv~~f~~~~~~~~~~~ 75 (256)
T cd02569 1 LRFAYLGWNYNGFAVQEETTNTVEETLFEALEKTRLIED-----RQTSNYSRCGRTDKGVSAFGQVISLDVRSNLKPEDG 75 (256)
T ss_pred CEEEEeCCcceeeeECCCCCCCHHHHHHHHHHHhcCCCC-----CCceeEEeecccCccccccCcEEEEEecCCCCcccc
Confidence 579999999999999997 69999999999999987753 2579999999999999999999999974 2332
Q ss_pred ----------------HHHHHHhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCC
Q 045140 139 ----------------GLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSG 202 (468)
Q Consensus 139 ----------------~l~~~LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~ 202 (468)
.|..+||++||+||||+++.+|+.+||||++|.+|+|+|+|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~lN~~LP~dI~V~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~-------------------- 135 (256)
T cd02569 76 LDPSTDVKSTADEEELPYCKILNRVLPPDIRILAWAPVPPDFSARFSCVSRTYRYFFPKG-------------------- 135 (256)
T ss_pred ccccccccccccchHHHHHHHHHhhCCCCcEEEEEEECCCCcCCCccCCceEEEEEecCC--------------------
Confidence 58899999999999999999999999999999999999999741
Q ss_pred cchhhhhhhhccccccccccccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCc
Q 045140 203 NELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANS 282 (468)
Q Consensus 203 ~e~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (468)
T Consensus 136 -------------------------------------------------------------------------------- 135 (256)
T cd02569 136 -------------------------------------------------------------------------------- 135 (256)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccccccccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccc
Q 045140 283 ESVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNF 362 (468)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnF 362 (468)
.+|+++|++|+++|+|+|||+||
T Consensus 136 ---------------------------------------------------------~ldi~~m~~a~~~f~G~HDF~~F 158 (256)
T cd02569 136 ---------------------------------------------------------DLDIELMRKAAKLLLGEHDFRNF 158 (256)
T ss_pred ---------------------------------------------------------CCCHHHHHHHHHHhhCCcchHHH
Confidence 14688999999999999999999
Q ss_pred cCCc-CCCCCCceEEEEEEEEeeeee-ecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhCC-CCCCC
Q 045140 363 TTRT-KAEDPSARRYIISFGADSVVN-VEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQK-DVNIN 439 (468)
Q Consensus 363 t~~~-~~~d~s~~R~I~s~~~~~~~~-~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~~-~~~~~ 439 (468)
|+.. +....+++|+|.++++.+... .++.+++.|+|+|+||||||||+|||+|++||+|.++.+.++.+|.. ++...
T Consensus 159 ~~~~~~~~~~~~~RtI~~~~v~~~~~~~~~~~~~~~~i~g~~FL~~mVR~mvg~ll~vg~G~~~~~~i~~~L~~~~r~~~ 238 (256)
T cd02569 159 CKMDVANQVTNYVRRVLSAEVEPVDQHPDGDGLYYFEVRGSAFLWHQVRCMMAVLFLIGQGLEPPSVISQLLDVEKNPRK 238 (256)
T ss_pred hccCcccCCCCCceEEEEEEEEEccCCCCCCcEEEEEEEEcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCccccCC
Confidence 9743 223578999999999864100 01237899999999999999999999999999999999999999964 44455
Q ss_pred CC--CCCCCCceeeeccc
Q 045140 440 VP--TAPEVGLYLDECIF 455 (468)
Q Consensus 440 ip--~APa~GL~L~~v~y 455 (468)
.+ +|||+||||++|.|
T Consensus 239 ~~~~~Ap~~GL~L~~v~~ 256 (256)
T cd02569 239 PQYTMASEVPLVLYDCGF 256 (256)
T ss_pred CCcCcCCCCCcEEEEeeC
Confidence 55 89999999999987
No 15
>PRK14587 tRNA pseudouridine synthase ACD; Provisional
Probab=100.00 E-value=6.9e-62 Score=479.02 Aligned_cols=213 Identities=27% Similarity=0.418 Sum_probs=187.7
Q ss_pred ceEEEEEEEeCCCccceeecCCCCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEeecChhH
Q 045140 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG 139 (468)
Q Consensus 60 rkval~i~Y~Gt~Y~G~Q~qp~~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~id~~~ 139 (468)
.+|+|.|+||||+|+|||+||+ |||++||+||.++. .+|||||+||||++||+|+...++
T Consensus 1 ~~~~l~i~YdGt~f~G~Q~Q~~--TVq~~Le~aL~~i~---------------~~agRTDaGVHA~~qv~~~~~~~~--- 60 (256)
T PRK14587 1 MPYLYRIAYDGTLFYGFTGHPN--SLEPALRRVFGEIL---------------GRGSRTDPGVSAVGNVVMTSQKLP--- 60 (256)
T ss_pred CcEEEEEEECCCcccceecCcc--hHHHHHHHHHHHhc---------------cCccCCccCCCcccCEEEECCcCC---
Confidence 3689999999999999999998 99999999999852 139999999999999999743333
Q ss_pred HHHHHhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCCcchhhhhhhhccccccc
Q 045140 140 LVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVI 219 (468)
Q Consensus 140 l~~~LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~k~~ 219 (468)
...||++||+||+|+++.+|+.+||||+ |.+|+|.|+||..
T Consensus 61 -~~~LN~~LP~dI~V~~~~~V~~~FhaR~-a~~R~Y~Y~i~~~------------------------------------- 101 (256)
T PRK14587 61 -LGYVNSKLPRGVWAWAVAEVPEGFNPRR-AKRRRYLYVAPHW------------------------------------- 101 (256)
T ss_pred -HHHHHhcCCCCeEEEEEEECCCCcCcCc-ccceEEEEEEccC-------------------------------------
Confidence 5789999999999999999999999997 9999999999510
Q ss_pred cccccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCcccccccccccccccccc
Q 045140 220 GVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQ 299 (468)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (468)
T Consensus 102 -------------------------------------------------------------------------------- 101 (256)
T PRK14587 102 -------------------------------------------------------------------------------- 101 (256)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccccCCcCCCCCC-ceEEEE
Q 045140 300 NENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPS-ARRYII 378 (468)
Q Consensus 300 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnFt~~~~~~d~s-~~R~I~ 378 (468)
.+|+++|++|++.|+|+|||+|||+.... ..+ ++|+|.
T Consensus 102 ----------------------------------------~lDi~~m~~aa~~l~G~HDF~~F~~~~~~-~~~~~vRtI~ 140 (256)
T PRK14587 102 ----------------------------------------GEDVEAMREAAELLAGTHDYSSFIQRRGE-KATPTVTTVY 140 (256)
T ss_pred ----------------------------------------cchHHHHHHHHHHhcCCcChHHhccCCCC-CCCCCEEEEE
Confidence 14688999999999999999999975432 334 899999
Q ss_pred EEEEeeeeeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCCCCCCCCCCCCceeeecccCC
Q 045140 379 SFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFAS 457 (468)
Q Consensus 379 s~~~~~~~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~~~~~~~ip~APa~GL~L~~v~y~~ 457 (468)
++++.. ++ +++.|+|.|+|||+||||+|||+|++||+|+++++.+..+|.+++...+|+|||+||||.+|.|+.
T Consensus 141 ~i~v~~----~~-~~i~i~i~g~sFL~~mVR~mVG~Ll~Vg~G~~~~~~i~~~L~~~r~~~~~~APa~GL~L~~V~Y~~ 214 (256)
T PRK14587 141 EIGVEL----RG-DLIYLYFVGRGFRNKMIRKMAWAILAAGRGVLSRRDIAELLERPRPGAVPSAPAEGLVLLDIEYDV 214 (256)
T ss_pred EEEEEE----eC-CEEEEEEEechhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcCcccCCCCCCCCCCEEeeeccCc
Confidence 998863 23 689999999999999999999999999999999999999997666778999999999999999973
No 16
>KOG2554 consensus Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.3e-51 Score=404.50 Aligned_cols=246 Identities=30% Similarity=0.470 Sum_probs=209.5
Q ss_pred cccCcceEEEEEEEeCCCccceeecC--CCCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeE
Q 045140 55 QLCKRRKIAIFFAYCGVGYQGMQKNP--GAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR 132 (468)
Q Consensus 55 ~~~~krkval~i~Y~Gt~Y~G~Q~qp--~~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~ 132 (468)
+.+++|.|||.|+|+|++|+|+.-|+ +.+||||.|++||.+..+|. +.+...++|||||||||+|.|||+|+.
T Consensus 61 s~~~kR~IAlkiaY~GW~Y~Gla~Qe~T~~~TIEg~l~eAL~kt~Lie-----s~~~~~ysRCGRTDKGVSAfgQviSl~ 135 (425)
T KOG2554|consen 61 SAHSKRHIALKIAYLGWNYQGLAPQEHTNNPTIEGKLFEALKKTRLIE-----SRQTCNYSRCGRTDKGVSAFGQVISLV 135 (425)
T ss_pred hcccceEEEEEEEEeccccCceecCCCCCCcchHHHHHHHHHhhhccc-----CcccccccccCCcccchhhhhheeeee
Confidence 44778999999999999999998884 56799999999999999885 356789999999999999999999988
Q ss_pred ee--cCh---------------hHHHHHHhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHH
Q 045140 133 FC--IDP---------------PGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESV 195 (468)
Q Consensus 133 ~~--id~---------------~~l~~~LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~ 195 (468)
+. +++ -.++..||..||+||||+++.+|+..|+|||+|..|+|.|++|-
T Consensus 136 lRS~~p~~~s~~~~~~~a~~~Ei~Y~~mLN~vLP~dIRi~awapvp~~FsARFsC~~RtYrY~F~k-------------- 201 (425)
T KOG2554|consen 136 LRSRIPMPDSQRDAVATADSEEIPYVHMLNRVLPPDIRIVAWAPVPPTFSARFSCVQRTYRYYFPK-------------- 201 (425)
T ss_pred eeccCCCchhhhccccccccccccHHHHHhccCCCcceEEEEecCCCCccceeehhhceeeEeccC--------------
Confidence 64 222 13678899999999999999999999999999999999999972
Q ss_pred HhhhCCCcchhhhhhhhccccccccccccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhh
Q 045140 196 MASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESV 275 (468)
Q Consensus 196 ~a~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 275 (468)
T Consensus 202 -------------------------------------------------------------------------------- 201 (425)
T KOG2554|consen 202 -------------------------------------------------------------------------------- 201 (425)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccCccccccccccccccccccccccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhccc
Q 045140 276 MVENANSESVNETLVESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVG 355 (468)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~G 355 (468)
..+|+++|++|+.+|+|
T Consensus 202 ---------------------------------------------------------------~dLdI~~M~kAA~l~vG 218 (425)
T KOG2554|consen 202 ---------------------------------------------------------------KDLDIDRMSKAASLLVG 218 (425)
T ss_pred ---------------------------------------------------------------CCcCHHHHHHHHHHHhc
Confidence 12579999999999999
Q ss_pred ccccccccCCcCCCC-CCceEEEEEEEEeeeeeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhCC
Q 045140 356 SHNFHNFTTRTKAED-PSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQK 434 (468)
Q Consensus 356 tHdFhnFt~~~~~~d-~s~~R~I~s~~~~~~~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~~ 434 (468)
+|||.|||+-...+- .+..|+|.+..|...-... +++.|+|.|++|||||||+||+.|..||+|.-++++|..+|+-
T Consensus 219 e~DFrNFCK~D~~n~vtny~Rti~s~kV~~~~~~~--~my~ldi~g~AFLwHqVRcimaiL~liGq~~E~p~lI~dLldI 296 (425)
T KOG2554|consen 219 EHDFRNFCKIDVSNGVTNYERTILSAKVEDVGQTP--GMYYLDIQGSAFLWHQVRCIMAILFLIGQGLEQPSLISDLLDI 296 (425)
T ss_pred chhhhhhhhhcchhhhHHHHhhhheeeEEEcCCCC--ceEEEEeechhhHHHHHHHHHHHHHHhccccCCchHHHHHHhc
Confidence 999999998643332 5688999999886422222 3899999999999999999999999999999999999999962
Q ss_pred ---CCCCCCCCCCCCCceeeecccCCCCccccc
Q 045140 435 ---DVNINVPTAPEVGLYLDECIFASYNKKWKD 464 (468)
Q Consensus 435 ---~~~~~ip~APa~GL~L~~v~y~~yn~~~~~ 464 (468)
+.+.-.-+|-.-.|.|.+|.|-.-|..|..
T Consensus 297 ek~P~kPqY~mA~~~PL~LydC~f~~e~~ew~~ 329 (425)
T KOG2554|consen 297 EKNPQKPQYTMASDYPLELYDCDFHRENVEWRH 329 (425)
T ss_pred ccCCCCceeeeccCCceEEEecCCCCccccccc
Confidence 234445589999999999999777777764
No 17
>KOG4393 consensus Predicted pseudouridylate synthase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-38 Score=307.60 Aligned_cols=250 Identities=21% Similarity=0.230 Sum_probs=202.5
Q ss_pred cceEEEEEEEeCCCccceeecCCC--CCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEeec-
Q 045140 59 RRKIAIFFAYCGVGYQGMQKNPGA--KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCI- 135 (468)
Q Consensus 59 krkval~i~Y~Gt~Y~G~Q~qp~~--~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~i- 135 (468)
.+||.+.|+||||.|.|||.+.+. .|||+-||+|+.....+ +++++..|+|||+||||.+|++++....
T Consensus 4 ~~ryll~i~ydgT~f~e~a~~~s~~~~tIq~~leea~eeqt~l--------~~l~l~~ssrtDa~Vha~~naa~~~vpr~ 75 (295)
T KOG4393|consen 4 IMRYLLKIPYDGTAFEESAERLSKVARTIQGFLEEASEEQTGL--------DRLDLESSSRTDAGVHAYLNAAHYIVPRF 75 (295)
T ss_pred hheeEEEecccccccHHHHhccCCcceehhhhhhhhHHhhcCC--------cceeecccCCCchhhheeeeeEEEEeecc
Confidence 478999999999999999998554 49999999999998653 5689999999999999999999988653
Q ss_pred ---ChhHHHHHHhhcC-CC--CeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCCcchhhhh
Q 045140 136 ---DPPGLVERLNSNL-PT--QIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCL 209 (468)
Q Consensus 136 ---d~~~l~~~LN~~L-P~--dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~~e~~~~~ 209 (468)
.+......+|-.| ++ ||+|..+..|+.+||||+++.+|+|.|.|.+. -+|.+ ++
T Consensus 76 sg~~~~~~~~a~nt~l~~k~gdirV~dv~~Vps~FhaR~sassRtY~YRla~g-~d~l~------~f------------- 135 (295)
T KOG4393|consen 76 SGSQQQAKDRAVNTVLQRKDGDIRVIDVRCVPSNFHARYSASSRTYFYRLASG-SDPLS------IF------------- 135 (295)
T ss_pred cCCcHHHHHHHHhccccCCCCceEEEEeeecCcchhheecccceeEEEEeecC-CCccC------hh-------------
Confidence 3444556677665 45 89999999999999999999999999999753 11100 00
Q ss_pred hhhccccccccccccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCcccccccc
Q 045140 210 ECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETL 289 (468)
Q Consensus 210 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (468)
T Consensus 136 -------------------------------------------------------------------------------- 135 (295)
T KOG4393|consen 136 -------------------------------------------------------------------------------- 135 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccccCCcCCC
Q 045140 290 VESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAE 369 (468)
Q Consensus 290 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnFt~~~~~~ 369 (468)
+ +.++|..+..++.-+|++|.++|+|+|||.+|+..+ ..
T Consensus 136 ----------------E------------------------Rd~cW~lp~~lna~kmqeaa~lf~G~hdfsaf~~at-s~ 174 (295)
T KOG4393|consen 136 ----------------E------------------------RDRCWHLPEELNARKMQEAAPLFEGSHDFSAFTEAT-ST 174 (295)
T ss_pred ----------------h------------------------hcccccCCcccCHHHHHhhhhhhccchhhhhhhcCC-CC
Confidence 0 134677777899999999999999999999999865 34
Q ss_pred CCCceEEEEEEEEe---ee--------eeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhC-CCC-
Q 045140 370 DPSARRYIISFGAD---SV--------VNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQ-KDV- 436 (468)
Q Consensus 370 d~s~~R~I~s~~~~---~~--------~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~-~~~- 436 (468)
.+...+++..+.+. .+ ....-.+++.++++++|||+.|||+|++.||.++.+.++...+..+|. ++.
T Consensus 175 ~y~P~~t~rr~sv~~~g~~~a~~~~~~~e~~~~~~~nve~e~~gflyrQvRrm~a~LV~~g~~al~~~qv~~iLe~~~~~ 254 (295)
T KOG4393|consen 175 VYFPSITERRLSVLNNGDPLACSNQPETEGVTTNVGNVEGETEGFLYRQVRRMRAYLVTAGSRALLYHQVLYILEVRDIV 254 (295)
T ss_pred CCCCcccceeeeecccCCccccccCCccccceeeeEEEEEEecchHHHHHHhhheeeeeecccccchhhhhhhhhccchh
Confidence 45666777666652 11 001113789999999999999999999999999999999999999996 332
Q ss_pred ---CCCCCCCCCCCceeeecccCC
Q 045140 437 ---NINVPTAPEVGLYLDECIFAS 457 (468)
Q Consensus 437 ---~~~ip~APa~GL~L~~v~y~~ 457 (468)
+..++.||++||+|..|.|.+
T Consensus 255 ~l~k~~~~vapphglfL~sv~Y~n 278 (295)
T KOG4393|consen 255 GLLKCVGTVAPPHGLFLSSVEYVN 278 (295)
T ss_pred hhhhccCCCCCCccceeeeEEech
Confidence 456899999999999999986
No 18
>PF01416 PseudoU_synth_1: tRNA pseudouridine synthase; InterPro: IPR020097 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. This entry represents pseudouridine synthase I (TruA). TruA from Escherichia coli modifies positions uracil-38, U-39 and/or U-40 in tRNA [, ]. TruA contains one atom of zinc essential for its native conformation and tRNA recognition and has a strictly conserved aspartic acid that is likely to be involved in catalysis []. These enzymes are dimeric proteins that contain two positively charged, RNA-binding clefts along their surface. Each cleft contains a highly conserved aspartic acid located at its centre. The structural domains have a topological similarity to those of other RNA-binding proteins, though the mode of interaction with tRNA appears to be unique. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1VS3_B 2NR0_B 2NQP_D 1DJ0_A 2NRE_A.
Probab=99.82 E-value=1.1e-22 Score=174.19 Aligned_cols=101 Identities=32% Similarity=0.460 Sum_probs=79.5
Q ss_pred HHhhcccccccccccCCcCCCCCCceEEEEEEEEeeeeeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 045140 349 ILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLI 428 (468)
Q Consensus 349 alk~f~GtHdFhnFt~~~~~~d~s~~R~I~s~~~~~~~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i 428 (468)
|++.|+|+|||++|++... ..+++.|+|.++.+. ...+++. +|+|+|||+||||+|||+++.+++|..+.+.+
T Consensus 1 A~~~~~G~HdF~~f~~~~~-~~~~~~r~i~~~~~~-----~~~~~~~-~i~g~~Fl~~~vR~~vg~~~~~~~G~~~~~~i 73 (105)
T PF01416_consen 1 AAKLYVGTHDFSGFQKQKT-VEKNTIRTIFSIDII-----EEGDVVV-EIHGNSFLRHQVRIMVGTLLRTGRGVHSLEQI 73 (105)
T ss_dssp -CCEETCEEECCGCSSCS--HHHHHCCCEEEEECC-----CCCCEEE-EEEESS--TTHHHHHHCCCCHHHTTSCEEECC
T ss_pred CcceeEecCCCcCCEECCc-ccccHHHHHHHHhhh-----cCCCEEE-EEEecccccccchhhhHHHHHHhcCCCCHHHH
Confidence 5678999999999998632 236789999998874 2347888 99999999999999999999999999987766
Q ss_pred HHHhCCC-CCCC---CCCCCCCCceeeecccC
Q 045140 429 ETALQKD-VNIN---VPTAPEVGLYLDECIFA 456 (468)
Q Consensus 429 ~~~l~~~-~~~~---ip~APa~GL~L~~v~y~ 456 (468)
..+|... +... +.+|||+||+|.+|.|+
T Consensus 74 ~~~L~~~~~~~~~~ri~~ap~~gL~L~~v~y~ 105 (105)
T PF01416_consen 74 AELLNSKLRPKAPPRILTAPAVGLYLFHVRYD 105 (105)
T ss_dssp CCCHHHHSCTTS-TEEEEEEECCECCEECCTT
T ss_pred HHHHhccCccccCCCcceeeCCCCCceEeeCc
Confidence 6666422 2333 44999999999999996
No 19
>PF01416 PseudoU_synth_1: tRNA pseudouridine synthase; InterPro: IPR020097 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. This entry represents pseudouridine synthase I (TruA). TruA from Escherichia coli modifies positions uracil-38, U-39 and/or U-40 in tRNA [, ]. TruA contains one atom of zinc essential for its native conformation and tRNA recognition and has a strictly conserved aspartic acid that is likely to be involved in catalysis []. These enzymes are dimeric proteins that contain two positively charged, RNA-binding clefts along their surface. Each cleft contains a highly conserved aspartic acid located at its centre. The structural domains have a topological similarity to those of other RNA-binding proteins, though the mode of interaction with tRNA appears to be unique. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1VS3_B 2NR0_B 2NQP_D 1DJ0_A 2NRE_A.
Probab=98.23 E-value=6.4e-08 Score=82.72 Aligned_cols=89 Identities=28% Similarity=0.350 Sum_probs=71.0
Q ss_pred EEEEeCC-CccceeecCCCCCHHHHHHHHHHHcCCCCccc----------CCCCCceeeeecccCCccccccCCEEeeEe
Q 045140 65 FFAYCGV-GYQGMQKNPGAKTIEGDLEEALFHSGAVSERD----------RGNPRRYDWARSARTDKGVSAVGQVVSGRF 133 (468)
Q Consensus 65 ~i~Y~Gt-~Y~G~Q~qp~~~TIEg~LE~AL~k~g~i~e~n----------~~~~~ki~~~rasRTDkGVHA~~qVvs~~~ 133 (468)
...|+|+ +|+|||++ +|++...+++|..+..+.+.+ .-..-++-+..++|||+|||++.|+..+
T Consensus 2 ~~~~~G~HdF~~f~~~---~~~~~~~~r~i~~~~~~~~~~~~~~i~g~~Fl~~~vR~~vg~~~~~~~G~~~~~~i~~~-- 76 (105)
T PF01416_consen 2 AKLYVGTHDFSGFQKQ---KTVEKNTIRTIFSIDIIEEGDVVVEIHGNSFLRHQVRIMVGTLLRTGRGVHSLEQIAEL-- 76 (105)
T ss_dssp CCEETCEEECCGCSSC---S-HHHHHCCCEEEEECCCCCCEEEEEEESS--TTHHHHHHCCCCHHHTTSCEEECCCCC--
T ss_pred cceeEecCCCcCCEEC---CcccccHHHHHHHHhhhcCCCEEEEEEecccccccchhhhHHHHHHhcCCCCHHHHHHH--
Confidence 3579999 99999998 678899999999988765432 0011245578999999999999999875
Q ss_pred ecChhHHHHHHhhcCCC---CeEEEEEEEcC-CCCccccc
Q 045140 134 CIDPPGLVERLNSNLPT---QIRIFGYKRVT-ASFNAKKF 169 (468)
Q Consensus 134 ~id~~~l~~~LN~~LP~---dIrV~~i~~V~-~sF~AR~~ 169 (468)
||..+++ + ||+.+..+. -.||++|+
T Consensus 77 ----------L~~~~~~~~~~-ri~~ap~~gL~L~~v~y~ 105 (105)
T PF01416_consen 77 ----------LNSKLRPKAPP-RILTAPAVGLYLFHVRYD 105 (105)
T ss_dssp ----------HHHHSCTTS-T-EEEEEEECCECCEECCTT
T ss_pred ----------HhccCccccCC-CcceeeCCCCCceEeeCc
Confidence 8888865 6 999999999 89999874
No 20
>PF10105 DUF2344: Uncharacterized protein conserved in bacteria (DUF2344); InterPro: IPR018768 This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function.
Probab=96.34 E-value=0.03 Score=53.43 Aligned_cols=97 Identities=20% Similarity=0.250 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEe--ecChhHHHHHHhhcCCCCeEEEEEEEcC
Q 045140 84 TIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRF--CIDPPGLVERLNSNLPTQIRIFGYKRVT 161 (468)
Q Consensus 84 TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~--~id~~~l~~~LN~~LP~dIrV~~i~~V~ 161 (468)
-+...++.||.++|+=-...-|-.-...++-+.=.=-||.+.+-++-+.+ .++++.+.++||+.||+.|+|.++..++
T Consensus 19 dl~r~~eRa~rRA~lp~a~SqGFnP~Pkisf~~aLpvGv~S~~E~~di~l~~~~~~~~~~~rLn~~lP~Gl~i~~~~~i~ 98 (187)
T PF10105_consen 19 DLMRVFERALRRAGLPVAYSQGFNPHPKISFAPALPVGVESLAEYMDIELEEDIDPEEVLERLNAVLPEGLRILEAEEIP 98 (187)
T ss_pred HHHHHHHHHhhhcCCCeeecCCCCCCcceeecccccCceeeccEEEEEEEecCCCHHHHHHHHHHhCCCCCEEEEEEEcc
Confidence 35678999999998732222222234567777778899999999999888 4789999999999999999999999998
Q ss_pred CCCcccccCCceEEEEEecc
Q 045140 162 ASFNAKKFCDQRRYVYLLPV 181 (468)
Q Consensus 162 ~sF~AR~~c~~R~Y~Yllp~ 181 (468)
....+ ....-..+.|.+..
T Consensus 99 ~~~~s-l~~~i~~~~Y~i~~ 117 (187)
T PF10105_consen 99 PKAPS-LMALINAAEYRITL 117 (187)
T ss_pred CCCcc-hhhhcceEEEEEEe
Confidence 44332 22233556677653
No 21
>COG5011 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.68 E-value=2 Score=41.47 Aligned_cols=94 Identities=13% Similarity=0.218 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEee--cChhHHHHHHhhcCCCCeEEEEEEEcCC-C
Q 045140 87 GDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFC--IDPPGLVERLNSNLPTQIRIFGYKRVTA-S 163 (468)
Q Consensus 87 g~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~--id~~~l~~~LN~~LP~dIrV~~i~~V~~-s 163 (468)
.-++.++.++|.--...-|-.-+-.++.|.=---|+..-|-.|-|.+. ++++.+++.||+.||+|+.+..+..+.+ +
T Consensus 23 RlidR~iRRAglpiayT~GFhP~prmsia~alpvG~~ssge~fd~eL~e~v~~dk~~etl~~~lp~Dl~~~~v~~iD~ks 102 (228)
T COG5011 23 RLIDRTIRRAGLPIAYTGGFHPHPRMSIAQALPVGIYSSGEIFDFELTEEVSEDKFKETLNKALPNDLPAYDVEKIDKKS 102 (228)
T ss_pred HHHHHHHHhcCCceeecCCCCCCCceeeccccccccccCceEEEEEeeeecCcHHHHHHHHHhCCCCcchhheeeecCCC
Confidence 467788888876322222222234566666666788888888887763 6889999999999999999999999985 5
Q ss_pred CcccccCCceEEEEEec
Q 045140 164 FNAKKFCDQRRYVYLLP 180 (468)
Q Consensus 164 F~AR~~c~~R~Y~Yllp 180 (468)
.++-.--..-+|...+-
T Consensus 103 ps~nqvl~~arY~i~vi 119 (228)
T COG5011 103 PSSNQVLEAARYFIKVI 119 (228)
T ss_pred ccHHHHHHhhcEEEEEE
Confidence 55544445556776664
No 22
>TIGR01213 conserved hypothetical protein TIGR01213. Members of this family show twilight-zone similarity to several predicted RNA pseudouridine synthases. All trusted members of this family are archaeal. Several eukaryotic homologs lack N-terminal homology including two CXXC motifs.
Probab=74.67 E-value=74 Score=34.03 Aligned_cols=91 Identities=18% Similarity=0.178 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCC--EEeeEe------ecChhHHHHHHhhcCCCCeE
Q 045140 82 AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQ--VVSGRF------CIDPPGLVERLNSNLPTQIR 153 (468)
Q Consensus 82 ~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~q--Vvs~~~------~id~~~l~~~LN~~LP~dIr 153 (468)
..+||+.|...+..+-. ...+.++.|||-|.-|=-+|. -+-+.+ .+|...+.+.||+.....|.
T Consensus 184 ~~SVeelI~~~v~~~~~--------~~~~~Fh~aGREDvDvRMLG~GRPFvlEi~~P~rr~~dl~~le~~IN~~~~g~V~ 255 (388)
T TIGR01213 184 PESVEELIASPFLKATG--------GTDAYFHGAGREDVDVRMLGTGRPFVLEVKEPRYRKIDLDPLEEEINTSGKGKVE 255 (388)
T ss_pred CchHHHHHHHHHHHHhC--------CceeEEeccCccccceeeccCCCceEEEecCCccCCCCHHHHHHHHhhccCCCEE
Confidence 46899999988888743 246899999999999999985 222222 25667788999999989999
Q ss_pred EEEEEEcCCCCcc--cccCCceEEEEEec
Q 045140 154 IFGYKRVTASFNA--KKFCDQRRYVYLLP 180 (468)
Q Consensus 154 V~~i~~V~~sF~A--R~~c~~R~Y~Yllp 180 (468)
|....-+++.=-. +..-..|+|.=++.
T Consensus 256 v~~L~~~~~~~v~~ik~~~~~K~Y~alV~ 284 (388)
T TIGR01213 256 VEGLKFATREEVEEVKEEKHRKVYRALVE 284 (388)
T ss_pred EEEeEEEcHHHHHHHhccCCceEEEEEEE
Confidence 9998876642110 11112467766664
No 23
>cd01291 PseudoU_synth PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases. Some psi sites such as psi55,13,38 and 39 in tRNA are highly conserved, being in the same position in eubacteria, archeabacteria and eukaryotes. Other psi sites occur in a more restricted fashion, for example psi2604in 23S RNA made by E.coli RluF has only been detected in E.coli. Human dyskerin with the help of guide RNAs makes the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Mutations in human dyskerin cause X-linked dyskeratosis congenitas. Missense mutation in human PUS1 causes mitochondrial myopathy and sideroblastic anemia (MLASA).
Probab=51.29 E-value=29 Score=28.37 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=18.0
Q ss_pred eeeeecccCCccccccCCEEe
Q 045140 110 YDWARSARTDKGVSAVGQVVS 130 (468)
Q Consensus 110 i~~~rasRTDkGVHA~~qVvs 130 (468)
-.+..|||.|+.++.. |+++
T Consensus 24 ~~i~~aG~kDk~a~t~-q~v~ 43 (87)
T cd01291 24 KRVGYAGRKDKRAVTT-QLVS 43 (87)
T ss_pred heEEECccCCCCeeEE-EEEc
Confidence 4688999999999999 9987
No 24
>PF09153 DUF1938: Domain of unknown function (DUF1938); InterPro: IPR015236 This domain, which is predominantly found in the archaeal protein O6-alkylguanine-DNA alkyltransferase, adopts a secondary structure consisting of a three stranded antiparallel beta-sheet and three alpha helices. The exact function has not, as yet, been defined, though it has been postulated that this domain may confer thermostability to the protein []. ; GO: 0005737 cytoplasm; PDB: 1MGT_A.
Probab=41.26 E-value=32 Score=28.92 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=24.1
Q ss_pred cCceEEEEEEEeCchhhHHHHHHHHHHHH
Q 045140 389 EGIDFLKCEVVGQSFMLHQIRKMIGLAVA 417 (468)
Q Consensus 389 ~g~~~v~i~I~GqSFL~hQIRkMVG~lv~ 417 (468)
+.++-|.|.+.|.-||.+||+.|++.|--
T Consensus 22 ~kIqGItfslDg~efl~eri~~L~~~L~k 50 (86)
T PF09153_consen 22 EKIQGITFSLDGEEFLRERISRLIEFLKK 50 (86)
T ss_dssp SSEEEEEEESSHHHHHH-HHHHHHHHHHH
T ss_pred CceeeEEEEeccHHHHHHHHHHHHHHHHh
Confidence 44677899999999999999999998853
No 25
>PF11691 DUF3288: Protein of unknown function (DUF3288); InterPro: IPR021705 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=27.73 E-value=31 Score=29.40 Aligned_cols=26 Identities=42% Similarity=0.740 Sum_probs=22.1
Q ss_pred CccceeecCCCCCHHHHHHHHHHHcCCCC
Q 045140 72 GYQGMQKNPGAKTIEGDLEEALFHSGAVS 100 (468)
Q Consensus 72 ~Y~G~Q~qp~~~TIEg~LE~AL~k~g~i~ 100 (468)
+|.|| ||++.||.+|++.|.+.|+-.
T Consensus 37 RY~gF---PGA~diq~DL~kiL~~W~lte 62 (90)
T PF11691_consen 37 RYQGF---PGARDIQKDLDKILQKWGLTE 62 (90)
T ss_pred HhcCC---CCHHHHHHHHHHHHHHcCCCH
Confidence 36676 799999999999999998743
No 26
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=25.79 E-value=84 Score=30.64 Aligned_cols=50 Identities=32% Similarity=0.444 Sum_probs=36.7
Q ss_pred ceEEEEEEEeCCCccceeecCCCCCHHHHHHHHHHHcCCCCcccCCCCCceeeeeccc
Q 045140 60 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSAR 117 (468)
Q Consensus 60 rkval~i~Y~Gt~Y~G~Q~qp~~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasR 117 (468)
++.+|++-||||=- .+...|....+-..+.++|.++-. ++...-+..|||
T Consensus 2 ~~~~l~lD~DGTL~-~~~~~p~~~~~~~~~~~~L~~L~~-------~~~~~v~ivSGR 51 (244)
T TIGR00685 2 RKRAFFFDYDGTLS-EIVPDPDAAVVSDRLLTILQKLAA-------RPHNAIWIISGR 51 (244)
T ss_pred CcEEEEEecCcccc-CCcCCCcccCCCHHHHHHHHHHHh-------CCCCeEEEEECC
Confidence 46789999999964 466677777788889999998743 223344688888
No 27
>PRK14554 putative pseudouridylate synthase; Provisional
Probab=23.38 E-value=9.8e+02 Score=26.00 Aligned_cols=89 Identities=12% Similarity=0.111 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCC----EEeeEe----ecChhHHHHHHhhcCCCCeEE
Q 045140 83 KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQ----VVSGRF----CIDPPGLVERLNSNLPTQIRI 154 (468)
Q Consensus 83 ~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~q----Vvs~~~----~id~~~l~~~LN~~LP~dIrV 154 (468)
.+||+.|...+..+.. ...+.++.|||-|.-|=-+|. |+-+.- .++...+. +|.+-...|.|
T Consensus 220 ~SVeelI~~~i~~~f~--------~~~~~fh~aGREDvDVRmLG~GRPFViEi~~p~r~~~~~~~l~--~~~~~~g~V~v 289 (422)
T PRK14554 220 ESVEELIAKPVIEAFG--------GEDAVFHGAGREDVDARMLGTGRPFVIEVKEPRKRKVDLEALE--EEINADGKVEV 289 (422)
T ss_pred CCHHHHHHHHHHHHhC--------CCceEEecCCCCCcceEecCCCCceEEEecCcccccCCHHHHH--HhhccCCCEEE
Confidence 6999999988777632 356899999999999999987 332211 13444554 44444678999
Q ss_pred EEEEEcCCCCcccc--cCCceEEEEEecc
Q 045140 155 FGYKRVTASFNAKK--FCDQRRYVYLLPV 181 (468)
Q Consensus 155 ~~i~~V~~sF~AR~--~c~~R~Y~Yllp~ 181 (468)
.....|++.--.+. ....|+|+=++..
T Consensus 290 ~~l~~~~~~~~~~ik~~~~~K~YralV~~ 318 (422)
T PRK14554 290 ENLRFATRKEVERIKEEKASKTYRALVES 318 (422)
T ss_pred EEEEEEcHHHHHHHhcCCCceEEEEEEEE
Confidence 99987775422211 1123777766653
No 28
>COG1258 Predicted pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=20.88 E-value=3.1e+02 Score=29.42 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCC----EEeeEee----cChhHHHHHHhhcCCCCeE
Q 045140 82 AKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQ----VVSGRFC----IDPPGLVERLNSNLPTQIR 153 (468)
Q Consensus 82 ~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~q----Vvs~~~~----id~~~l~~~LN~~LP~dIr 153 (468)
..||+..|-..+..+.. ..+..+.+|||-|--|--+|+ |+-.+-. +|.+.+...||.-. .+.
T Consensus 190 ~~sve~~i~~~~~~~f~--------g~~~~fhgAGREDvDvRMLG~GRPfVlEvk~Pr~R~~dl~~l~~~in~~~--~ve 259 (398)
T COG1258 190 PESVEELIKQPIKEAFG--------GLDAKFHGAGREDVDVRMLGTGRPFVLEVKEPRRRNVDLDELEEEINRGG--KVE 259 (398)
T ss_pred cccHHHHHHHHHHHhcc--------CceeEEEccCCCccceeeecCCCceEEEecCcccccCChHHHHHHhccCC--cEE
Confidence 46899888886666532 256889999999999999995 5544432 67789999999998 899
Q ss_pred EEEEEEcCCCCccc---ccCCceEEEEEec
Q 045140 154 IFGYKRVTASFNAK---KFCDQRRYVYLLP 180 (468)
Q Consensus 154 V~~i~~V~~sF~AR---~~c~~R~Y~Yllp 180 (468)
|+.+.-+.+.=-.+ -.-.+|+|+-++.
T Consensus 260 v~~l~f~~~e~v~~ik~~~~~rK~YrAlV~ 289 (398)
T COG1258 260 VFDLEFVGREEVEEIKETERHRKVYRALVY 289 (398)
T ss_pred EEEEEecCHHHHHHHHhccccceeEEEEEE
Confidence 99998776432111 1223677777664
Done!