Query 045140
Match_columns 468
No_of_seqs 248 out of 1300
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 17:59:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vs3_A TRNA pseudouridine synt 100.0 3.3E-72 1.1E-76 550.2 23.0 244 59-457 1-248 (249)
2 1dj0_A Pseudouridine synthase 100.0 1.1E-71 3.8E-76 550.6 26.3 244 58-457 2-248 (264)
3 2v9k_A Uncharacterized protein 18.1 1.7E+02 0.0057 31.2 6.2 90 83-181 317-421 (530)
4 2jvf_A De novo protein M7; tet 16.1 88 0.003 24.5 2.6 53 59-120 5-60 (96)
5 3q6c_A Probable receptor YHHM; 9.0 1.3E+02 0.0045 24.1 1.6 16 65-80 67-82 (83)
6 3rd4_A Uncharacterized protein 8.8 1.3E+02 0.0044 25.0 1.5 16 65-80 71-86 (100)
7 2ahm_E Replicase NSP8, replica 8.3 71 0.0024 29.5 -0.3 51 401-463 93-148 (203)
8 1zrv_A Spinigerin; helical pep 8.0 1.7E+02 0.0057 18.0 1.4 10 403-412 11-20 (26)
9 2l0c_A Putative membrane prote 7.8 1E+02 0.0034 25.4 0.5 18 65-82 70-87 (97)
10 3da5_A Argonaute; PAZ domain, 7.5 98 0.0034 25.9 0.3 56 404-463 1-58 (128)
No 1
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural NPPSFA, national project on protein structural and function analyses; 2.25A {Thermus thermophilus}
Probab=100.00 E-value=3.3e-72 Score=550.20 Aligned_cols=244 Identities=25% Similarity=0.360 Sum_probs=216.7
Q ss_pred cceEEEEEEEeCCCccceeecCCC-CCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEee--c
Q 045140 59 RRKIAIFFAYCGVGYQGMQKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFC--I 135 (468)
Q Consensus 59 krkval~i~Y~Gt~Y~G~Q~qp~~-~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~--i 135 (468)
|+||+|.|+||||+|+|||+||+. +|||++||+||.++| +++.|.+||||||||||+|||+||++. +
T Consensus 1 M~r~~l~i~YdGt~y~GwQ~Q~~~~~TVq~~Le~AL~~~~----------~~v~~~~agRTDaGVHA~gqv~~f~~~~~~ 70 (249)
T 1vs3_A 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGIG----------ALPKAVAAGRTDAGVHALAMPFHVDVESAI 70 (249)
T ss_dssp CEEEEEEEEECGGGCSBSSCCCTTCCCHHHHHHHHGGGGT----------BCSCCEESSCCBTTCEEEEEEEEEEECSCC
T ss_pred CcEEEEEEEEECCCceeEeECCCCCCCHHHHHHHHHHHcC----------CcceEEEeccCcCCcCccccEEEEEECCCC
Confidence 679999999999999999999999 999999999999983 468899999999999999999999985 5
Q ss_pred ChhHHHHHHhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCCcchhhhhhhhccc
Q 045140 136 DPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERG 215 (468)
Q Consensus 136 d~~~l~~~LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~~e~~~~~~~~~~~ 215 (468)
+++.|+.+||++||+||+|+++.+|+.+||||++|.+|+|+|+|+.....++ +.
T Consensus 71 ~~~~~~~~lN~~LP~dI~V~~~~~v~~~FhARf~a~~R~Y~Y~i~~~~~~~~-----------~~--------------- 124 (249)
T 1vs3_A 71 PVEKVPEALNRLLPEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPHPSP-----------LL--------------- 124 (249)
T ss_dssp CGGGHHHHHHHHSCTTEEEEEEEEECTTCCTTTTCSEEEEEEEEEECSSCCT-----------TT---------------
T ss_pred CHHHHHHHHHhcCCcCEEEEEEEECCCCCCcccccccEEEEEEEccCCCCCh-----------hh---------------
Confidence 7889999999999999999999999999999999999999999986432110 00
Q ss_pred cccccccccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCcccccccccccccc
Q 045140 216 RKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTS 295 (468)
Q Consensus 216 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (468)
T Consensus 125 -------------------------------------------------------------------------------- 124 (249)
T 1vs3_A 125 -------------------------------------------------------------------------------- 124 (249)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccccCCcCCCCCCceE
Q 045140 296 ETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARR 375 (468)
Q Consensus 296 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnFt~~~~~~d~s~~R 375 (468)
..+.|+...++|+++|++|++.|+|+|||+|||+... ++++|
T Consensus 125 -----------------------------------~~~~~~~~~~ldi~~m~~aa~~l~G~HDF~~F~~~~~---~~~vR 166 (249)
T 1vs3_A 125 -----------------------------------RHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAKEET---RPGER 166 (249)
T ss_dssp -----------------------------------TTTSEEECSCCCHHHHHHHHHHHSEEEEGGGGCSSCC---SCCEE
T ss_pred -----------------------------------CCeeEEeCCCCCHHHHHHHHHHhcCceeHHheecCCC---CCCCc
Confidence 1346677778999999999999999999999997543 78999
Q ss_pred EEEEEEEeeeeeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhC-CCCCCCCCCCCCCCceeeecc
Q 045140 376 YIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQ-KDVNINVPTAPEVGLYLDECI 454 (468)
Q Consensus 376 ~I~s~~~~~~~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~-~~~~~~ip~APa~GL~L~~v~ 454 (468)
+|+++++.+++..+| ++|.|+|+|+|||+||||+|||+|++||+|+.+.+.++.+|. +++...+|+|||+||||.+|.
T Consensus 167 ~I~~~~v~~~~~~~~-~~i~~~i~g~~FL~~mVR~mvG~l~~vg~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~L~~v~ 245 (249)
T 1vs3_A 167 ELLEARLQVAEGEAG-LEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAHGLYFVEAA 245 (249)
T ss_dssp EEEEEEEEEEECSSS-EEEEEEEEESCCCTTHHHHHHHHHHHHHHSSSCGGGHHHHHHHCCGGGSCCCCCGGGEEEEEEE
T ss_pred EEEEEEEEeccccCC-CEEEEEEEEChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCCCcccCcCccCCCCcEEeeee
Confidence 999999875433344 899999999999999999999999999999999999988884 677789999999999999999
Q ss_pred cCC
Q 045140 455 FAS 457 (468)
Q Consensus 455 y~~ 457 (468)
|++
T Consensus 246 Y~~ 248 (249)
T 1vs3_A 246 YPE 248 (249)
T ss_dssp CCC
T ss_pred CCC
Confidence 963
No 2
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Probab=100.00 E-value=1.1e-71 Score=550.57 Aligned_cols=244 Identities=26% Similarity=0.398 Sum_probs=218.0
Q ss_pred CcceEEEEEEEeCCCccceeecCCCCCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCCEEeeEee--c
Q 045140 58 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFC--I 135 (468)
Q Consensus 58 ~krkval~i~Y~Gt~Y~G~Q~qp~~~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~qVvs~~~~--i 135 (468)
+|+||+|.|+||||+|+|||+||+.+|||++||+||.++.. +++.|.+||||||||||+|||+||++. +
T Consensus 2 Pm~r~~l~i~YdGt~y~GwQ~Q~~~~TVq~~Le~AL~~~~~---------~~v~~~~agRTDaGVHA~gqv~~f~~~~~~ 72 (264)
T 1dj0_A 2 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN---------EPITVFCAGRTDAGVHGTGQVVHFETTALR 72 (264)
T ss_dssp CCEEEEEEEEECCTTSSCSCCTTCSSCHHHHHHHHHHHHHT---------SCCCEEESSCCCTTCEEEEEEEEEEESCCC
T ss_pred CccEEEEEEEEeCCCceeEEECcCCCCHHHHHHHHHHHHhC---------CCeEEEEeccCCCCCchhhEEEEEEECCCC
Confidence 68999999999999999999999999999999999999953 468999999999999999999999985 6
Q ss_pred ChhHHHHHHhhcCCCCeEEEEEEEcCCCCcccccCCceEEEEEecccccCCCCccchhHHHhhhCCCcchhhhhhhhccc
Q 045140 136 DPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERG 215 (468)
Q Consensus 136 d~~~l~~~LN~~LP~dIrV~~i~~V~~sF~AR~~c~~R~Y~Yllp~~~l~p~~~~~~~~~~a~~~~~~e~~~~~~~~~~~ 215 (468)
+++.|+.+||++||+||+|+++.+|+.+||||++|.+|+|+|+|+.....++.
T Consensus 73 ~~~~~~~~lN~~LP~dI~V~~~~~V~~~FhARf~a~~R~Y~Y~i~~~~~~~~~--------------------------- 125 (264)
T 1dj0_A 73 KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV--------------------------- 125 (264)
T ss_dssp CHHHHHHHHHHTSCTTEEEEEEEECCTTCCTTTTCCEEEEEEEEECSSSCCCT---------------------------
T ss_pred CHHHHHHHHHhhCCcCeEEEEEEeCCCCCCcccccccEEEEEEEccCCCCChh---------------------------
Confidence 78899999999999999999999999999999999999999999864321100
Q ss_pred cccccccccccccCCCCCCCccccccccccccccccccCCCCCCCcccccccccccchhhhhhccCcccccccccccccc
Q 045140 216 RKVIGVMGKRTYQLGLPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTS 295 (468)
Q Consensus 216 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (468)
T Consensus 126 -------------------------------------------------------------------------------- 125 (264)
T 1dj0_A 126 -------------------------------------------------------------------------------- 125 (264)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccccchhhhhhhhhccccccccccccccCChhhHHHHHHHHhhcccccccccccCCcCCCCCCceE
Q 045140 296 ETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARR 375 (468)
Q Consensus 296 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~alk~f~GtHdFhnFt~~~~~~d~s~~R 375 (468)
...+.||...++|+++|++|++.|+|+|||+|||+.. ...++++|
T Consensus 126 ----------------------------------~~~~~~~~~~~lD~~~M~~aa~~l~G~HDF~~F~~~~-~~~~s~vR 170 (264)
T 1dj0_A 126 ----------------------------------LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQ-CQSRTPWR 170 (264)
T ss_dssp ----------------------------------TTTSSEECCSCCCHHHHHHHHGGGCEEEECGGGCCTT-CCCSCCEE
T ss_pred ----------------------------------HcCceEeeCCCCCHHHHHHHHHHhcCcccHHHhccCC-CCCCCcEE
Confidence 0134677778899999999999999999999999743 34678999
Q ss_pred EEEEEEEeeeeeecCceEEEEEEEeCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHhC-CCCCCCCCCCCCCCceeeecc
Q 045140 376 YIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQ-KDVNINVPTAPEVGLYLDECI 454 (468)
Q Consensus 376 ~I~s~~~~~~~~~~g~~~v~i~I~GqSFL~hQIRkMVG~lv~V~rg~~p~~~i~~~l~-~~~~~~ip~APa~GL~L~~v~ 454 (468)
+|+++++.. +| ++|.|+|+|+|||+||||+|||+|++||+|+++.+.++.+|. +++...+|+|||+||||.+|.
T Consensus 171 ~I~~~~v~~----~~-~~i~~~i~g~~FL~~mVR~mvG~L~~vG~G~~~~~~i~~~L~~~~r~~~~~~APa~GL~L~~V~ 245 (264)
T 1dj0_A 171 NVMHINVTR----HG-PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 245 (264)
T ss_dssp EEEEEEEEE----ET-TEEEEEEEESCCCTTHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCGGGSCCCCCSTTEEEEEEE
T ss_pred EEEEEEEEE----CC-CEEEEEEEEchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCCCcccCcCccCCCCcEEeeec
Confidence 999998864 34 799999999999999999999999999999999999988884 677889999999999999999
Q ss_pred cCC
Q 045140 455 FAS 457 (468)
Q Consensus 455 y~~ 457 (468)
|+.
T Consensus 246 Y~~ 248 (264)
T 1dj0_A 246 YPD 248 (264)
T ss_dssp CCG
T ss_pred cCc
Confidence 963
No 3
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens}
Probab=18.13 E-value=1.7e+02 Score=31.16 Aligned_cols=90 Identities=16% Similarity=0.221 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHcCCCCcccCCCCCceeeeecccCCccccccCC----EEeeEe-------ecChhHHHHHHhhcCCCC
Q 045140 83 KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQ----VVSGRF-------CIDPPGLVERLNSNLPTQ 151 (468)
Q Consensus 83 ~TIEg~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDkGVHA~~q----Vvs~~~-------~id~~~l~~~LN~~LP~d 151 (468)
.+||+.|...+..+-. ...+.++.|||-|.-|=-+|+ |+-+.= ..+...+...||+. -..
T Consensus 317 ~SVee~I~~~i~~~f~--------~~~~~Fh~sGREDvDVRmLG~GRPFvlEi~~P~r~~~~~~dl~~le~~IN~~-~~~ 387 (530)
T 2v9k_A 317 SSVEELISDHLLAVFK--------AESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNS-SNK 387 (530)
T ss_dssp CCHHHHHHTTHHHHHT--------CSEEEEEESSCCCTTCEEEEEEEEEEEEEESCSCCCCCHHHHHHHHHHHHTT-CSS
T ss_pred CCHHHHHHHHHHHhcC--------CCeEEEeecCCCCCceeecCCCCcEEEEecCccccccchhHHHHHHHHHhcc-CCc
Confidence 6999998887777632 357899999999999999997 343210 02334577889983 345
Q ss_pred eEEEEEEEcCCCCccccc----CCceEEEEEecc
Q 045140 152 IRIFGYKRVTASFNAKKF----CDQRRYVYLLPV 181 (468)
Q Consensus 152 IrV~~i~~V~~sF~AR~~----c~~R~Y~Yllp~ 181 (468)
|.|.....|++.=-.+.. -..|+|.=++.+
T Consensus 388 V~V~~L~~v~~~~~~~ik~ge~~~~K~Y~alv~~ 421 (530)
T 2v9k_A 388 IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWT 421 (530)
T ss_dssp EEEEEEEEECTHHHHHHHHHHHHCCEEEEEEEEE
T ss_pred EEEEeeEEEcHHHHHHHhcccccCCeEEEEEEEE
Confidence 999999988743211111 124777766653
No 4
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=16.10 E-value=88 Score=24.53 Aligned_cols=53 Identities=28% Similarity=0.290 Sum_probs=29.2
Q ss_pred cceEEEEEEEeCCCccceeecCCCCCHH---HHHHHHHHHcCCCCcccCCCCCceeeeecccCCc
Q 045140 59 RRKIAIFFAYCGVGYQGMQKNPGAKTIE---GDLEEALFHSGAVSERDRGNPRRYDWARSARTDK 120 (468)
Q Consensus 59 krkval~i~Y~Gt~Y~G~Q~qp~~~TIE---g~LE~AL~k~g~i~e~n~~~~~ki~~~rasRTDk 120 (468)
+.-+-|.+.-+|....==-+-...+-+| .+||+||.++|+ +.+.+..|+-.|-
T Consensus 5 kvditikiqrdgqeieidirvstgkeleralqelekalaraga---------rnvqitisaende 60 (96)
T 2jvf_A 5 KVDITIKIQRDGQEIEIDIRVSTGKELERALQELEKALARAGA---------RNVQITISAENDE 60 (96)
T ss_dssp SCEEEEEEEETTEEEEEEEECCSSSHHHHHHHHHHHHHHHHTC---------SEEEEEEECSSHH
T ss_pred EEEEEEEEeeCCeEEEEEEEEcccHHHHHHHHHHHHHHHhccc---------cceEEEEEecChH
Confidence 3445566666663321111112233344 378999999986 4566766665553
No 5
>3q6c_A Probable receptor YHHM; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.60A {Klebsiella variicola at-22}
Probab=9.02 E-value=1.3e+02 Score=24.06 Aligned_cols=16 Identities=19% Similarity=0.661 Sum_probs=13.7
Q ss_pred EEEEeCCCccceeecC
Q 045140 65 FFAYCGVGYQGMQKNP 80 (468)
Q Consensus 65 ~i~Y~Gt~Y~G~Q~qp 80 (468)
.+.|.||.|.||..++
T Consensus 67 ~Lt~QGTRF~~F~~~~ 82 (83)
T 3q6c_A 67 MLSYKGTAFVAFTPDP 82 (83)
T ss_dssp EEEEETTEEEEEEECC
T ss_pred EEEEeeeEEEEEecCC
Confidence 5789999999998764
No 6
>3rd4_A Uncharacterized protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, propen_03304, unknown function; 2.90A {Proteus penneri}
Probab=8.79 E-value=1.3e+02 Score=24.98 Aligned_cols=16 Identities=6% Similarity=0.104 Sum_probs=14.4
Q ss_pred EEEEeCCCccceeecC
Q 045140 65 FFAYCGVGYQGMQKNP 80 (468)
Q Consensus 65 ~i~Y~Gt~Y~G~Q~qp 80 (468)
.+.|.||.|-||..++
T Consensus 71 ~Lt~QGTRFi~F~~~~ 86 (100)
T 3rd4_A 71 RLFMQGSRFVQFETDV 86 (100)
T ss_dssp EEEEETTEEEEEEECC
T ss_pred EEEEeeeEEEEeecCC
Confidence 5789999999999976
No 7
>2ahm_E Replicase NSP8, replicase polyprotein 1AB, heavy chain; SARS-COV, non-structural protein, S complex, hexadecamer, viral protein, replication; 2.40A {Sars coronavirus} SCOP: d.302.1.1
Probab=8.30 E-value=71 Score=29.54 Aligned_cols=51 Identities=18% Similarity=0.411 Sum_probs=34.9
Q ss_pred CchhhHHHHHH----HHHHHHHHc-CCCCHHHHHHHhCCCCCCCCCCCCCCCceeeecccCCCCcccc
Q 045140 401 QSFMLHQIRKM----IGLAVAVVR-NCAPQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWK 463 (468)
Q Consensus 401 qSFL~hQIRkM----VG~lv~V~r-g~~p~~~i~~~l~~~~~~~ip~APa~GL~L~~v~y~~yn~~~~ 463 (468)
++-|++|+||+ |-.++.-+| |+.|.+ .||.+-+.-|.+--+.++.|++-..
T Consensus 93 ~~mLF~MlrkLD~~~vn~i~~~Ar~GvvPL~------------~IP~~sa~kL~vV~pD~~~~~k~v~ 148 (203)
T 2ahm_E 93 QTMLFTMLRKLDNDALNNIINNARDGCVPLN------------IIPLTTAAKLMVVVPDYGTYKNTCD 148 (203)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTTCEESS------------CCCCSTTCEEEEEECSHHHHHHHEE
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCeeeee------------eehhhccceeEEEeCCHHHHHHhhc
Confidence 57799999996 555666665 344543 4677777788888777777776443
No 8
>1zrv_A Spinigerin; helical peptide in TFE, antimicrobial protein, antibiotic; NMR {Synthetic} PDB: 1zrw_A
Probab=8.04 E-value=1.7e+02 Score=17.96 Aligned_cols=10 Identities=40% Similarity=0.647 Sum_probs=7.7
Q ss_pred hhhHHHHHHH
Q 045140 403 FMLHQIRKMI 412 (468)
Q Consensus 403 FL~hQIRkMV 412 (468)
.|+.|.|.|-
T Consensus 11 lllkqlrimr 20 (26)
T 1zrv_A 11 LLLKQLRIMR 20 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5788998874
No 9
>2l0c_A Putative membrane protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Salmonella enterica subsp}
Probab=7.84 E-value=1e+02 Score=25.39 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=15.0
Q ss_pred EEEEeCCCccceeecCCC
Q 045140 65 FFAYCGVGYQGMQKNPGA 82 (468)
Q Consensus 65 ~i~Y~Gt~Y~G~Q~qp~~ 82 (468)
.+.|-||.|-||+.++..
T Consensus 70 ~Lt~QGTRfl~Fer~~~~ 87 (97)
T 2l0c_A 70 TLSYKGTRFVGFVSRTPD 87 (97)
T ss_dssp EEEEETTEEEEEECSSCG
T ss_pred EEEEeeeeEEeeecCCCc
Confidence 578999999999987653
No 10
>3da5_A Argonaute; PAZ domain, RNA binding, SH3-like barrel, RNA binding protein; 1.94A {Thermococcus thioreducens}
Probab=7.51 E-value=98 Score=25.85 Aligned_cols=56 Identities=29% Similarity=0.245 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCHHHHHHHhC--CCCCCCCCCCCCCCceeeecccCCCCcccc
Q 045140 404 MLHQIRKMIGLAVAVVRNCAPQSLIETALQ--KDVNINVPTAPEVGLYLDECIFASYNKKWK 463 (468)
Q Consensus 404 L~hQIRkMVG~lv~V~rg~~p~~~i~~~l~--~~~~~~ip~APa~GL~L~~v~y~~yn~~~~ 463 (468)
|-||||.|-.+--.|+++ .+.++..|. +..-+---+|.++- ....+.|..||++-+
T Consensus 1 m~hqi~s~ktlwelv~~~---~~~l~~fl~~h~~~~~l~dias~~k-~vykp~f~~y~~~p~ 58 (128)
T 3da5_A 1 MSHQIRSKKTLWELVGRN---KDALRDFLKEHRGTILLRDIASEHK-VVYKPIFKRYNGDPD 58 (128)
T ss_dssp -------CCCHHHHTTSC---HHHHHHHHHHTTTTEEEEETTSSSC-CEEEECBCTTCSSBC
T ss_pred CchHHHHHHHHHHHHCCC---HHHHHHHHHHhhcceeHHhhcchhh-hHHhHHHHHhcCCCC
Confidence 679999998776666665 333444442 22111122455443 456788899987543
Done!