RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 045140
         (468 letters)



>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia
           coli [TaxId: 562]}
          Length = 264

 Score = 70.8 bits (172), Expect = 2e-14
 Identities = 34/121 (28%), Positives = 47/121 (38%), Gaps = 11/121 (9%)

Query: 59  RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSART 118
             KIA+   Y G  Y G Q+    ++++  LE+AL                     + RT
Sbjct: 3   VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA---------NEPITVFCAGRT 53

Query: 119 DKGVSAVGQVVSGRFC--IDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYV 176
           D GV   GQVV                +N+NLP  I +   K V   F+A+     RRY 
Sbjct: 54  DAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYR 113

Query: 177 Y 177
           Y
Sbjct: 114 Y 114



 Score = 54.6 bits (130), Expect = 6e-09
 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 10/129 (7%)

Query: 336 FCYGEEEKKRFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLK 395
             Y   + +R +R  +  +G ++F +F           R  +               ++ 
Sbjct: 132 HFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN------VTRHGPYVV 185

Query: 396 CEVVGQSFMLHQIRKMIGLAVAVVRNCAPQSLIETALQ-KDVNINVPTAPEVGLYLDECI 454
            ++   +F+ H +R ++G  + V  +  P+S I   L  KD  +   TA   GLYL    
Sbjct: 186 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 245

Query: 455 FASYNKKWK 463
              Y  ++ 
Sbjct: 246 ---YPDRYD 251


>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella
           sp., lx3 [TaxId: 576]}
          Length = 478

 Score = 30.8 bits (68), Expect = 0.44
 Identities = 5/50 (10%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 175 YVYLLPVFALDSSSH----RDRESVMASLGSGNELVKCL-ECSERGRKVI 219
            +++ P +   ++ +     +   +M   G+  +    + E  +R  +++
Sbjct: 47  AIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLM 96


>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus
           [TaxId: 1396]}
          Length = 479

 Score = 30.4 bits (67), Expect = 0.56
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 175 YVYLLPVFALDSSSH----RDRESVMASLGSGNELVKCL-ECSERGRKVI 219
            ++L PV+   +  +     D   +M   G+  +  + L E  ER  K++
Sbjct: 47  VIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMKLM 96


>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue
           (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}
          Length = 69

 Score = 25.5 bits (56), Expect = 2.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 368 AEDPSARRYIISFGADSVVNVEGIDFLKCE 397
           A+DP   RY+ S  A   V+  GI    C 
Sbjct: 40  AKDPRYGRYVNSPNARKAVSSCGIALPTCH 69


>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein
           homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}
          Length = 67

 Score = 25.5 bits (56), Expect = 3.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 368 AEDPSARRYIISFGADSVVNVEGIDFLKC 396
           A+DP+  +YI S  A   +   G+    C
Sbjct: 39  AKDPTYGQYIRSPHARDTLTSCGLAVPHC 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.130    0.369 

Gapped
Lambda     K      H
   0.267   0.0418    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,594,077
Number of extensions: 71244
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 6
Length of query: 468
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 379
Effective length of database: 1,185,626
Effective search space: 449352254
Effective search space used: 449352254
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)