BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045142
         (316 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1KNX|A Chain A, Hpr KinasePHOSPHATASE FROM MYCOPLASMA PNEUMONIAE
 pdb|1KNX|B Chain B, Hpr KinasePHOSPHATASE FROM MYCOPLASMA PNEUMONIAE
 pdb|1KNX|C Chain C, Hpr KinasePHOSPHATASE FROM MYCOPLASMA PNEUMONIAE
 pdb|1KNX|D Chain D, Hpr KinasePHOSPHATASE FROM MYCOPLASMA PNEUMONIAE
 pdb|1KNX|E Chain E, Hpr KinasePHOSPHATASE FROM MYCOPLASMA PNEUMONIAE
 pdb|1KNX|F Chain F, Hpr KinasePHOSPHATASE FROM MYCOPLASMA PNEUMONIAE
          Length = 312

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 29  NPNGIL--KAYTSPVMGYGTNLQEGNLSFQVPKISADFSNNEMTIFATIVLPKNMTTVSH 86
           NP  I+  K++T P     T L + N ++QVP +  DF + E++      + +   TV+ 
Sbjct: 83  NPPAIILTKSFTDP-----TVLLQVNQTYQVPILKTDFFSTELSFTVETYINEQFATVAQ 137

Query: 87  V 87
           +
Sbjct: 138 I 138


>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
           Henselae
 pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
           Henselae
          Length = 484

 Score = 28.1 bits (61), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 72  FATIVLPKNMTT-VSHVWQEGPVRGDNHLGMHPL 104
           F  +V+ + MTT VSH+W  G V G  H+ + P+
Sbjct: 305 FGAVVVDEKMTTNVSHIWAVGDVTG--HIQLTPV 336


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,986,005
Number of Sequences: 62578
Number of extensions: 340244
Number of successful extensions: 685
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 3
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)