Query 045142
Match_columns 316
No_of_seqs 189 out of 982
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 10:14:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08760 Cyt_b561_FRRS1_like Eu 100.0 2E-32 4.3E-37 239.5 19.3 178 112-292 4-191 (191)
2 KOG4293 Predicted membrane pro 100.0 3.8E-35 8.3E-40 282.6 0.5 309 4-312 70-389 (403)
3 smart00665 B561 Cytochrome b-5 99.9 4E-26 8.6E-31 187.4 11.7 124 138-263 1-129 (129)
4 PF03188 Cytochrom_B561: Eukar 99.9 1.9E-23 4.2E-28 172.9 12.8 128 138-265 1-132 (137)
5 cd08554 Cyt_b561 Eukaryotic cy 99.9 9.3E-23 2E-27 167.8 11.6 126 136-263 2-131 (131)
6 cd08766 Cyt_b561_ACYB-1_like P 99.9 1.6E-21 3.5E-26 161.8 11.8 132 131-265 3-138 (144)
7 cd08761 Cyt_b561_CYB561D2_like 99.9 4.2E-21 9E-26 166.8 13.2 134 132-265 17-157 (183)
8 cd08762 Cyt_b561_CYBASC3 Verte 99.8 1.6E-20 3.4E-25 159.7 11.9 133 133-265 32-168 (179)
9 cd08765 Cyt_b561_CYBRD1 Verteb 99.8 2.3E-20 5E-25 155.7 11.7 133 133-265 9-145 (153)
10 PLN02351 cytochromes b561 fami 99.8 5.9E-20 1.3E-24 162.5 14.7 126 135-265 49-180 (242)
11 cd08764 Cyt_b561_CG1275_like N 99.8 2.2E-19 4.7E-24 157.9 14.5 131 133-265 21-157 (214)
12 PLN02810 carbon-monoxide oxyge 99.8 4.6E-19 1E-23 155.6 14.9 130 133-265 44-177 (231)
13 cd08763 Cyt_b561_CYB561 Verteb 99.8 2.8E-19 6.1E-24 148.2 12.3 130 134-265 5-138 (143)
14 PLN02680 carbon-monoxide oxyge 99.8 8.3E-19 1.8E-23 155.2 14.5 132 131-265 42-177 (232)
15 KOG1619 Cytochrome b [Energy p 99.8 2.3E-18 5.1E-23 150.8 10.0 131 133-265 52-186 (245)
16 smart00664 DoH Possible catech 99.7 3.5E-17 7.5E-22 137.1 14.3 112 4-121 27-147 (148)
17 PF04526 DUF568: Protein of un 99.7 3.3E-16 7.2E-21 121.8 11.3 100 18-117 1-101 (101)
18 PF03351 DOMON: DOMON domain; 99.5 6.4E-14 1.4E-18 113.5 11.4 84 4-91 29-124 (124)
19 PF10348 DUF2427: Domain of un 99.4 7.6E-13 1.6E-17 104.3 9.8 90 130-229 12-102 (105)
20 cd00241 CDH_cytochrome Cellobi 99.4 6.3E-12 1.4E-16 108.4 12.6 111 1-121 49-175 (184)
21 KOG3568 Dopamine beta-monooxyg 98.4 6.4E-07 1.4E-11 85.8 6.2 98 3-104 66-172 (603)
22 cd08764 Cyt_b561_CG1275_like N 97.3 0.0036 7.8E-08 55.5 11.3 98 168-265 20-118 (214)
23 cd08762 Cyt_b561_CYBASC3 Verte 97.1 0.034 7.3E-07 47.9 15.2 97 168-266 31-130 (179)
24 cd08766 Cyt_b561_ACYB-1_like P 97.1 0.0079 1.7E-07 50.1 10.8 95 169-265 5-99 (144)
25 cd08763 Cyt_b561_CYB561 Verteb 97.1 0.0077 1.7E-07 50.1 10.7 94 171-266 6-100 (143)
26 cd08554 Cyt_b561 Eukaryotic cy 97.0 0.01 2.2E-07 48.4 10.6 93 172-266 2-95 (131)
27 smart00665 B561 Cytochrome b-5 97.0 0.014 3E-07 47.5 11.1 94 174-269 1-96 (129)
28 PLN02680 carbon-monoxide oxyge 96.9 0.039 8.4E-07 49.5 14.2 126 171-298 46-181 (232)
29 cd08760 Cyt_b561_FRRS1_like Eu 96.9 0.014 3E-07 50.8 11.4 97 168-268 32-129 (191)
30 PF13301 DUF4079: Protein of u 96.9 0.02 4.3E-07 49.3 11.7 60 203-266 112-172 (175)
31 cd08761 Cyt_b561_CYB561D2_like 96.7 0.024 5.2E-07 49.1 11.1 96 168-265 17-116 (183)
32 PF03188 Cytochrom_B561: Eukar 96.5 0.01 2.3E-07 48.6 7.4 95 131-227 30-130 (137)
33 PLN02351 cytochromes b561 fami 96.5 0.27 5.8E-06 44.3 16.3 125 171-298 50-184 (242)
34 KOG1619 Cytochrome b [Energy p 96.3 0.075 1.6E-06 47.5 11.7 120 144-266 25-148 (245)
35 PLN02810 carbon-monoxide oxyge 96.3 0.066 1.4E-06 47.8 11.3 124 169-294 44-177 (231)
36 cd08765 Cyt_b561_CYBRD1 Verteb 96.0 0.15 3.3E-06 42.9 11.4 96 169-266 9-107 (153)
37 PF00033 Cytochrom_B_N: Cytoch 95.1 0.095 2.1E-06 44.7 7.6 93 173-265 10-127 (188)
38 COG2717 Predicted membrane pro 94.0 1.2 2.6E-05 39.4 11.7 127 144-283 51-185 (209)
39 PF10348 DUF2427: Domain of un 93.6 0.72 1.6E-05 36.3 8.9 89 167-265 13-102 (105)
40 PF00033 Cytochrom_B_N: Cytoch 93.6 1.1 2.4E-05 38.0 10.9 130 134-264 7-173 (188)
41 PF13301 DUF4079: Protein of u 93.3 1.4 3.1E-05 37.9 11.0 60 205-269 80-142 (175)
42 COG5658 Predicted integral mem 92.8 0.87 1.9E-05 40.0 9.0 73 236-308 41-113 (204)
43 PF13172 PepSY_TM_1: PepSY-ass 91.4 0.32 7E-06 30.0 3.4 31 237-267 2-32 (34)
44 PF10951 DUF2776: Protein of u 91.1 1.1 2.4E-05 41.3 8.0 122 177-305 156-290 (347)
45 PF10067 DUF2306: Predicted me 91.1 0.83 1.8E-05 35.7 6.3 30 237-266 2-31 (103)
46 PF01292 Ni_hydr_CYTB: Prokary 90.1 6.8 0.00015 33.0 11.8 20 246-265 103-122 (182)
47 PRK05419 putative sulfite oxid 89.9 9.5 0.00021 33.7 12.7 43 239-285 145-187 (205)
48 PF01292 Ni_hydr_CYTB: Prokary 89.0 11 0.00023 31.8 12.2 21 136-157 7-27 (182)
49 COG3038 CybB Cytochrome B561 [ 88.0 10 0.00022 32.9 11.2 27 205-231 47-73 (181)
50 TIGR02125 CytB-hydogenase Ni/F 86.0 16 0.00035 31.7 11.9 29 239-267 111-139 (211)
51 PF13706 PepSY_TM_3: PepSY-ass 85.8 1.3 2.9E-05 27.8 3.4 29 237-265 1-29 (37)
52 PF01794 Ferric_reduct: Ferric 85.7 4.4 9.6E-05 31.8 7.4 49 211-260 1-53 (125)
53 PRK11513 cytochrome b561; Prov 85.1 4.8 0.0001 34.5 7.8 60 205-264 42-103 (176)
54 PF13630 SdpI: SdpI/YhfL prote 80.8 2.5 5.5E-05 30.6 3.8 33 235-267 18-50 (76)
55 PF08507 COPI_assoc: COPI asso 80.3 21 0.00046 29.1 9.5 56 236-297 57-112 (136)
56 PRK05771 V-type ATP synthase s 79.9 31 0.00066 35.8 12.7 93 170-263 388-498 (646)
57 COG4858 Uncharacterized membra 79.1 39 0.00084 29.4 10.8 84 168-264 92-185 (226)
58 KOG1608 Protein transporter of 77.8 19 0.00042 33.5 9.2 59 210-268 217-281 (374)
59 PF13703 PepSY_TM_2: PepSY-ass 77.4 11 0.00023 28.3 6.4 31 235-266 56-86 (88)
60 PRK10179 formate dehydrogenase 76.9 36 0.00078 30.2 10.7 29 238-266 107-135 (217)
61 PF10856 DUF2678: Protein of u 76.7 6.4 0.00014 31.4 5.0 73 206-284 29-105 (118)
62 PF15099 PIRT: Phosphoinositid 75.8 3.2 6.8E-05 33.6 3.1 33 238-270 44-78 (129)
63 PF15330 SIT: SHP2-interacting 75.1 5.4 0.00012 31.5 4.3 33 276-308 3-35 (107)
64 PF10361 DUF2434: Protein of u 74.8 26 0.00056 32.5 9.2 99 205-303 43-154 (296)
65 TIGR01583 formate-DH-gamm form 71.5 69 0.0015 27.9 12.5 29 238-266 102-130 (204)
66 COG3038 CybB Cytochrome B561 [ 70.8 69 0.0015 27.7 10.5 93 134-229 11-109 (181)
67 TIGR02230 ATPase_gene1 F0F1-AT 66.8 29 0.00063 27.0 6.6 55 131-195 34-90 (100)
68 TIGR00353 nrfE c-type cytochro 66.5 1.6E+02 0.0035 30.3 14.7 64 133-197 114-177 (576)
69 PRK10263 DNA translocase FtsK; 65.7 99 0.0022 34.9 12.6 36 137-172 17-52 (1355)
70 PF05393 Hum_adeno_E3A: Human 65.6 8.9 0.00019 29.0 3.4 20 288-307 44-63 (94)
71 PRK11513 cytochrome b561; Prov 65.5 77 0.0017 27.1 9.8 91 134-228 8-103 (176)
72 PRK03735 cytochrome b6; Provis 61.9 42 0.00091 30.1 7.7 84 183-271 53-152 (223)
73 PRK10369 heme lyase subunit Nr 61.0 2E+02 0.0044 29.5 13.6 62 133-196 168-230 (571)
74 CHL00070 petB cytochrome b6 60.3 51 0.0011 29.3 7.9 84 183-271 45-144 (215)
75 PF13789 DUF4181: Domain of un 60.1 54 0.0012 25.7 7.3 31 238-268 25-55 (110)
76 TIGR02125 CytB-hydogenase Ni/F 58.5 1.2E+02 0.0026 26.1 11.1 55 135-190 7-67 (211)
77 PF03929 PepSY_TM: PepSY-assoc 58.5 19 0.00041 21.0 3.2 24 241-264 2-25 (27)
78 PRK10209 acid-resistance membr 58.3 78 0.0017 27.4 8.7 21 246-266 110-130 (190)
79 COG3965 Predicted Co/Zn/Cd cat 57.7 1.6E+02 0.0034 27.3 10.4 98 181-284 28-138 (314)
80 PF12650 DUF3784: Domain of un 57.6 51 0.0011 25.0 6.7 29 240-268 39-67 (97)
81 PF04238 DUF420: Protein of un 56.2 1.1E+02 0.0024 25.0 12.3 43 136-188 5-47 (133)
82 PRK10639 formate dehydrogenase 55.7 52 0.0011 28.9 7.2 29 238-266 105-133 (211)
83 PF02628 COX15-CtaA: Cytochrom 55.6 57 0.0012 30.2 7.9 90 170-265 66-155 (302)
84 TIGR03813 put_Glu_GABA_T putat 54.9 54 0.0012 32.4 8.0 28 235-262 389-416 (474)
85 TIGR00383 corA magnesium Mg(2+ 53.8 41 0.00089 31.3 6.6 42 246-287 263-305 (318)
86 PF09323 DUF1980: Domain of un 52.9 84 0.0018 26.9 7.9 18 177-194 34-51 (182)
87 PRK15006 thiosulfate reductase 52.3 1.9E+02 0.0041 26.4 13.8 125 133-266 71-203 (261)
88 PRK10171 hydrogenase 1 b-type 51.9 1.8E+02 0.0038 26.0 17.0 131 133-267 16-152 (235)
89 COG4329 Predicted membrane pro 51.4 29 0.00062 28.4 4.3 90 136-227 12-112 (160)
90 PLN02631 ferric-chelate reduct 51.4 58 0.0012 34.3 7.7 62 205-267 189-255 (699)
91 PF14800 DUF4481: Domain of un 50.9 47 0.001 31.0 6.2 34 241-274 63-96 (308)
92 PF10129 OpgC_C: OpgC protein; 49.0 2.5E+02 0.0054 26.9 11.3 54 137-194 186-239 (358)
93 PRK03735 cytochrome b6; Provis 48.9 99 0.0022 27.7 7.9 96 135-232 40-149 (223)
94 PRK12585 putative monovalent c 47.9 67 0.0015 28.0 6.3 46 140-192 10-57 (197)
95 CHL00070 petB cytochrome b6 47.1 1.5E+02 0.0032 26.4 8.7 97 134-232 31-141 (215)
96 TIGR03145 cyt_nit_nrfE cytochr 46.6 3.6E+02 0.0078 28.1 13.2 62 133-196 166-228 (628)
97 TIGR00910 2A0307_GadC glutamat 46.6 83 0.0018 31.5 7.9 10 229-238 386-395 (507)
98 PF06422 PDR_CDR: CDR ABC tran 46.6 22 0.00047 27.7 3.0 28 271-298 51-78 (103)
99 PF03729 DUF308: Short repeat 46.3 27 0.00059 24.3 3.3 23 242-264 23-45 (72)
100 PF14358 DUF4405: Domain of un 46.2 85 0.0018 21.8 5.8 45 141-185 7-55 (64)
101 PF13994 PgaD: PgaD-like prote 45.9 61 0.0013 26.5 5.7 32 275-306 66-97 (138)
102 cd00284 Cytochrome_b_N Cytochr 45.7 1.1E+02 0.0025 26.7 7.7 84 182-270 33-132 (200)
103 PRK11281 hypothetical protein; 45.6 1.8E+02 0.004 32.4 10.7 14 207-220 648-661 (1113)
104 MTH00086 CYTB cytochrome b; Pr 45.1 1.1E+02 0.0023 29.5 8.0 79 185-270 33-127 (355)
105 PF10856 DUF2678: Protein of u 45.1 91 0.002 24.9 6.2 47 173-222 29-75 (118)
106 TIGR00914 2A0601 heavy metal e 44.8 4.4E+02 0.0096 29.2 13.7 42 177-222 906-947 (1051)
107 PF02656 DUF202: Domain of unk 44.4 1.1E+02 0.0025 21.6 6.7 24 237-260 8-31 (73)
108 PF11044 TMEMspv1-c74-12: Plec 44.3 47 0.001 21.8 3.6 24 275-298 8-31 (49)
109 COG2717 Predicted membrane pro 44.3 44 0.00095 29.6 4.8 43 134-178 111-153 (209)
110 PF11014 DUF2852: Protein of u 43.6 30 0.00064 27.7 3.3 23 138-160 10-32 (115)
111 PHA02898 virion envelope prote 43.6 1.4E+02 0.0031 22.6 7.1 57 245-303 15-76 (92)
112 PRK12405 electron transport co 43.5 2.5E+02 0.0054 25.3 11.7 67 139-216 37-103 (231)
113 cd00284 Cytochrome_b_N Cytochr 43.4 1.9E+02 0.0042 25.3 8.8 96 135-232 21-130 (200)
114 PF15048 OSTbeta: Organic solu 43.2 45 0.00097 27.0 4.2 37 267-303 30-66 (125)
115 PLN02844 oxidoreductase/ferric 42.3 1.3E+02 0.0028 31.9 8.6 129 137-267 111-259 (722)
116 PF04277 OAD_gamma: Oxaloaceta 41.5 66 0.0014 23.3 4.8 22 275-296 11-32 (79)
117 PF10320 7TM_GPCR_Srsx: Serpen 41.3 1.4E+02 0.003 26.9 7.9 60 243-303 104-176 (257)
118 PF10746 Phage_holin_6: Phage 40.5 43 0.00093 23.9 3.3 13 254-266 22-34 (66)
119 COG4244 Predicted membrane pro 40.4 2.3E+02 0.005 24.0 10.3 95 168-266 44-144 (160)
120 PF01654 Bac_Ubq_Cox: Bacteria 40.2 3.8E+02 0.0082 26.5 12.1 63 239-301 115-205 (436)
121 PRK03557 zinc transporter ZitB 40.2 2.1E+02 0.0045 26.7 9.1 35 183-218 29-63 (312)
122 COG3658 Cytochrome b [Energy p 40.1 2.4E+02 0.0052 24.2 9.4 22 206-227 35-56 (192)
123 PF02009 Rifin_STEVOR: Rifin/s 39.8 38 0.00082 31.8 3.9 18 288-305 271-288 (299)
124 PF03729 DUF308: Short repeat 39.8 87 0.0019 21.6 5.1 67 182-257 3-69 (72)
125 MTH00131 CYTB cytochrome b; Pr 39.8 1.3E+02 0.0029 29.1 7.8 80 184-270 43-138 (380)
126 MTH00145 CYTB cytochrome b; Pr 39.5 1.6E+02 0.0035 28.6 8.3 82 183-271 43-140 (379)
127 COG3247 HdeD Uncharacterized c 38.9 2.6E+02 0.0057 24.3 13.0 19 251-269 134-152 (185)
128 PRK15049 L-asparagine permease 38.8 1.6E+02 0.0036 29.3 8.6 18 238-255 416-433 (499)
129 MTH00034 CYTB cytochrome b; Va 38.4 1.7E+02 0.0037 28.4 8.3 81 183-270 42-138 (379)
130 MTH00046 CYTB cytochrome b; Va 38.3 1.4E+02 0.0031 28.7 7.7 81 184-271 34-130 (355)
131 MTH00016 CYTB cytochrome b; Va 38.2 1.8E+02 0.0039 28.2 8.4 81 183-270 43-139 (378)
132 PHA03048 IMV membrane protein; 38.0 1.5E+02 0.0033 22.5 6.1 56 245-302 15-74 (93)
133 TIGR03750 conj_TIGR03750 conju 37.9 1.7E+02 0.0037 23.2 6.8 18 248-265 24-41 (111)
134 PF14358 DUF4405: Domain of un 37.4 1.3E+02 0.0028 20.8 5.6 26 234-259 35-60 (64)
135 PF10966 DUF2768: Protein of u 37.2 1.3E+02 0.0028 21.0 5.3 44 143-193 7-50 (58)
136 PF11377 DUF3180: Protein of u 37.2 1.3E+02 0.0028 24.7 6.3 44 270-314 29-72 (138)
137 PF03595 SLAC1: Voltage-depend 37.1 85 0.0018 29.2 6.0 35 181-219 8-42 (330)
138 PLN02292 ferric-chelate reduct 36.8 1E+02 0.0022 32.5 6.9 74 205-279 206-283 (702)
139 PF05767 Pox_A14: Poxvirus vir 36.2 1.9E+02 0.0042 22.0 7.8 54 246-301 16-74 (92)
140 PF06570 DUF1129: Protein of u 36.1 2.9E+02 0.0063 24.0 13.1 12 296-307 194-205 (206)
141 PF01794 Ferric_reduct: Ferric 36.0 79 0.0017 24.4 4.8 78 171-251 33-121 (125)
142 COG0598 CorA Mg2+ and Co2+ tra 35.8 69 0.0015 30.1 5.1 43 246-288 267-310 (322)
143 PF12811 BaxI_1: Bax inhibitor 35.7 3.5E+02 0.0076 25.0 9.5 57 242-301 209-273 (274)
144 PF11755 DUF3311: Protein of u 35.4 1.3E+02 0.0029 21.3 5.3 14 256-269 8-21 (66)
145 cd01663 Cyt_c_Oxidase_I Cytoch 35.4 4.7E+02 0.01 26.2 13.1 61 132-192 45-109 (488)
146 MTH00156 CYTB cytochrome b; Pr 35.4 1.9E+02 0.0042 27.7 8.1 82 183-271 32-129 (356)
147 MTH00100 CYTB cytochrome b; Pr 35.3 1.9E+02 0.0041 28.0 8.1 81 183-270 42-138 (379)
148 PF11990 DUF3487: Protein of u 35.2 1.8E+02 0.0039 23.4 6.7 20 247-266 26-45 (121)
149 KOG2302 T-type voltage-gated C 34.7 1.5E+02 0.0034 32.5 7.6 29 255-283 1335-1371(1956)
150 MTH00224 CYTB cytochrome b; Pr 34.0 1.7E+02 0.0036 28.5 7.5 81 183-270 43-139 (379)
151 MTH00033 CYTB cytochrome b; Pr 33.9 2E+02 0.0043 28.0 8.0 81 183-270 39-135 (383)
152 TIGR01478 STEVOR variant surfa 33.6 55 0.0012 30.3 3.8 13 293-305 277-289 (295)
153 MTH00191 CYTB cytochrome b; Pr 33.2 2.1E+02 0.0046 27.5 8.0 82 183-271 39-136 (365)
154 COG1276 PcoD Putative copper e 33.1 3.4E+02 0.0073 25.3 8.8 19 268-286 212-230 (289)
155 PF02439 Adeno_E3_CR2: Adenovi 33.1 1E+02 0.0023 19.5 3.9 22 282-303 12-33 (38)
156 MTH00074 CYTB cytochrome b; Pr 33.0 1.9E+02 0.0042 28.0 7.7 82 183-271 43-140 (380)
157 PF05545 FixQ: Cbb3-type cytoc 32.7 45 0.00098 22.0 2.4 20 287-306 20-39 (49)
158 KOG2082 K+/Cl- cotransporter K 32.3 2.1E+02 0.0045 30.6 8.0 21 234-254 597-617 (1075)
159 PRK05419 putative sulfite oxid 32.1 85 0.0018 27.6 4.7 34 142-177 119-152 (205)
160 MTH00022 CYTB cytochrome b; Va 32.1 2.1E+02 0.0045 27.8 7.8 80 184-270 42-137 (379)
161 PF09600 Cyd_oper_YbgE: Cyd op 32.0 1.7E+02 0.0037 21.9 5.6 49 206-259 30-80 (82)
162 PTZ00370 STEVOR; Provisional 32.0 60 0.0013 30.2 3.8 12 294-305 274-285 (296)
163 PRK09546 zntB zinc transporter 32.0 1.2E+02 0.0027 28.3 6.1 42 246-287 269-311 (324)
164 PF02009 Rifin_STEVOR: Rifin/s 31.8 51 0.0011 30.9 3.4 30 276-305 262-291 (299)
165 PF15345 TMEM51: Transmembrane 31.8 46 0.00099 29.9 2.9 14 246-259 11-24 (233)
166 PF06570 DUF1129: Protein of u 31.7 2E+02 0.0044 25.0 7.1 26 240-265 76-101 (206)
167 COG3125 CyoD Heme/copper-type 31.7 2.6E+02 0.0057 22.2 8.0 76 173-258 18-96 (111)
168 TIGR02901 QoxD cytochrome aa3 29.9 2.6E+02 0.0056 21.5 8.6 71 174-254 8-81 (94)
169 KOG4050 Glutamate transporter 29.5 3.2E+02 0.007 23.3 7.3 58 157-224 29-92 (188)
170 TIGR00203 cydB cytochrome d ox 29.2 5.2E+02 0.011 25.1 10.0 57 210-266 88-148 (378)
171 PF11862 DUF3382: Domain of un 29.0 2.6E+02 0.0055 21.5 6.5 75 183-257 14-100 (101)
172 TIGR00930 2a30 K-Cl cotranspor 28.9 2.7E+02 0.0059 30.5 8.8 27 235-261 490-516 (953)
173 KOG4671 Brain cell membrane pr 28.9 1.1E+02 0.0025 26.5 4.7 62 170-233 78-139 (201)
174 PF00115 COX1: Cytochrome C an 28.9 97 0.0021 30.5 5.1 64 131-194 41-107 (447)
175 PF01578 Cytochrom_C_asm: Cyto 28.9 3.8E+02 0.0083 23.1 9.1 29 133-161 69-97 (214)
176 PF03006 HlyIII: Haemolysin-II 28.8 1.8E+02 0.0039 25.1 6.3 7 211-217 82-88 (222)
177 PF13572 DUF4134: Domain of un 28.7 1.2E+02 0.0026 23.5 4.4 55 173-227 42-97 (98)
178 COG4097 Predicted ferric reduc 28.7 5.7E+02 0.012 25.1 14.3 21 205-225 76-96 (438)
179 PLN02292 ferric-chelate reduct 28.6 6.3E+02 0.014 26.7 11.1 35 210-248 251-287 (702)
180 COG3295 Uncharacterized protei 28.5 38 0.00082 29.7 1.8 33 237-269 21-54 (213)
181 PF11158 DUF2938: Protein of u 28.1 92 0.002 26.1 4.0 50 207-256 93-148 (150)
182 PRK11099 putative inner membra 28.1 5.8E+02 0.013 25.0 12.1 14 205-218 283-296 (399)
183 MTH00119 CYTB cytochrome b; Pr 27.8 3.1E+02 0.0068 26.5 8.2 81 183-270 43-139 (380)
184 PRK13024 bifunctional preprote 27.6 7.7E+02 0.017 26.3 12.9 22 139-160 577-598 (755)
185 PF07332 DUF1469: Protein of u 27.5 1.7E+02 0.0038 22.8 5.5 23 276-298 75-97 (121)
186 PRK12586 putative monovalent c 27.2 2.1E+02 0.0046 23.8 6.0 48 140-194 13-62 (145)
187 PF13677 MotB_plug: Membrane M 27.2 1.1E+02 0.0023 21.1 3.6 34 269-302 14-47 (58)
188 PF02322 Cyto_ox_2: Cytochrome 27.1 5.4E+02 0.012 24.3 10.2 58 210-267 83-144 (328)
189 MTH00213 ND6 NADH dehydrogenas 27.0 90 0.002 27.7 3.9 45 240-286 21-67 (239)
190 PRK10588 hypothetical protein; 26.7 2.1E+02 0.0047 22.1 5.5 47 206-257 45-93 (97)
191 TIGR02112 cyd_oper_ybgE cyd op 26.6 2E+02 0.0044 22.0 5.3 47 206-257 41-89 (93)
192 PF02322 Cyto_ox_2: Cytochrome 26.4 5.5E+02 0.012 24.2 11.9 54 206-259 157-210 (328)
193 KOG4293 Predicted membrane pro 25.8 21 0.00046 34.8 -0.2 112 133-246 278-395 (403)
194 PF11188 DUF2975: Protein of u 25.6 3.3E+02 0.0072 21.3 9.2 18 245-262 65-82 (136)
195 TIGR00844 c_cpa1 na(+)/h(+) an 25.4 4.6E+02 0.01 28.2 9.4 102 134-251 7-110 (810)
196 PF06027 DUF914: Eukaryotic pr 25.3 5.9E+02 0.013 24.2 13.4 48 177-224 133-182 (334)
197 KOG4812 Golgi-associated prote 24.8 1.1E+02 0.0025 27.6 4.2 71 135-228 172-242 (262)
198 KOG1094 Discoidin domain recep 24.7 93 0.002 32.2 4.0 34 273-307 391-424 (807)
199 COG1585 Membrane protein impli 24.6 2.1E+02 0.0045 23.6 5.5 21 293-314 63-83 (140)
200 PF14007 YtpI: YtpI-like prote 24.5 2.6E+02 0.0056 21.2 5.5 19 246-264 61-79 (89)
201 PTZ00127 cytochrome c oxidase 24.4 6.7E+02 0.015 24.5 13.8 60 206-266 219-278 (403)
202 TIGR01297 CDF cation diffusion 24.4 2.3E+02 0.0049 25.3 6.4 18 205-222 21-38 (268)
203 PF11241 DUF3043: Protein of u 24.3 3.1E+02 0.0068 23.5 6.6 55 245-302 75-130 (170)
204 PF10002 DUF2243: Predicted me 24.2 4.2E+02 0.0091 22.0 8.5 51 177-228 50-100 (143)
205 MTH00053 CYTB cytochrome b; Pr 24.2 3.4E+02 0.0073 26.4 7.7 81 183-270 43-139 (381)
206 PF12794 MscS_TM: Mechanosensi 23.6 6.3E+02 0.014 23.9 14.1 89 173-265 124-221 (340)
207 PF02628 COX15-CtaA: Cytochrom 23.6 5.8E+02 0.013 23.4 13.5 61 205-267 131-191 (302)
208 PRK15003 cytochrome d ubiquino 23.5 6.9E+02 0.015 24.3 10.6 85 213-297 91-189 (379)
209 PF12263 DUF3611: Protein of u 23.5 3.6E+02 0.0078 23.4 7.0 10 242-251 23-32 (183)
210 PF06024 DUF912: Nucleopolyhed 23.4 37 0.0008 26.3 0.8 35 272-306 61-95 (101)
211 TIGR00913 2A0310 amino acid pe 23.2 3E+02 0.0066 26.9 7.5 15 241-255 407-421 (478)
212 PF04483 DUF565: Protein of un 23.0 1E+02 0.0023 21.5 2.9 17 288-304 15-31 (60)
213 COG3768 Predicted membrane pro 22.9 2.8E+02 0.0062 26.2 6.5 38 237-274 58-98 (350)
214 TIGR01191 ccmC heme exporter p 22.6 5E+02 0.011 22.4 12.2 84 132-218 9-94 (184)
215 cd01661 cbb3_Oxidase_I Cytochr 22.5 8E+02 0.017 24.6 12.6 62 132-194 86-150 (493)
216 PF14007 YtpI: YtpI-like prote 22.4 3.5E+02 0.0076 20.5 8.2 53 241-299 33-85 (89)
217 PRK10929 putative mechanosensi 21.9 7.6E+02 0.016 27.7 10.5 59 207-265 627-694 (1109)
218 COG3247 HdeD Uncharacterized c 21.7 5.4E+02 0.012 22.3 11.0 21 246-266 106-126 (185)
219 MTH00100 CYTB cytochrome b; Pr 21.4 5.3E+02 0.012 25.0 8.5 95 134-232 28-136 (379)
220 TIGR02908 CoxD_Bacillus cytoch 21.4 4.2E+02 0.0091 21.0 9.3 44 173-224 26-69 (110)
221 PF11893 DUF3413: Domain of un 21.3 6.2E+02 0.013 22.9 8.7 18 287-304 149-166 (253)
222 PF06341 DUF1056: Protein of u 21.3 3.1E+02 0.0067 19.5 5.8 31 238-268 5-35 (63)
223 PTZ00358 hypothetical protein; 21.2 7.4E+02 0.016 23.8 9.1 61 242-303 105-172 (367)
224 COG0586 DedA Uncharacterized m 21.2 4.8E+02 0.01 22.7 7.5 29 240-268 139-167 (208)
225 PF10242 L_HGMIC_fpl: Lipoma H 21.1 2.4E+02 0.0052 24.1 5.4 56 135-192 69-126 (181)
226 COG1113 AnsP Gamma-aminobutyra 21.1 6.1E+02 0.013 25.3 8.8 12 241-252 401-412 (462)
227 PF04178 Got1: Got1/Sft2-like 20.7 2.1E+02 0.0046 22.7 4.7 21 274-294 64-84 (118)
228 TIGR01620 hyp_HI0043 conserved 20.7 3.3E+02 0.0073 25.4 6.6 12 290-301 68-79 (289)
229 TIGR01191 ccmC heme exporter p 20.3 3.7E+02 0.008 23.2 6.4 25 170-194 11-35 (184)
230 PF05915 DUF872: Eukaryotic pr 20.1 3.3E+02 0.0071 21.7 5.6 43 245-287 44-92 (115)
231 TIGR00908 2A0305 ethanolamine 20.0 4.7E+02 0.01 25.3 8.0 8 243-250 388-395 (442)
No 1
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=2e-32 Score=239.45 Aligned_cols=178 Identities=37% Similarity=0.650 Sum_probs=153.0
Q ss_pred ceEEeeccCceecccC--------CCCCcchhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHH
Q 045142 112 MGTLDLLSGKVTTTKG--------GTSGTLHFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAY 183 (316)
Q Consensus 112 ~~~ldl~~g~~~~~~~--------s~~~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~ 183 (316)
+.++|++++++++.+. +.++.+..+++||++|++||++++|+|++++||++. .++.||++|+.+|++++
T Consensus 4 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~---~~~~~~~~H~~~q~~~~ 80 (191)
T cd08760 4 SYSLDLASGTSSSGGSPFLLPNGSSVGSSDTLIKAHGVLMAIAWGILMPIGALLARYFLL---GDPVWFYLHAGLQLLAV 80 (191)
T ss_pred ceEEEeccceeccCCCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCchhHHHHHHHHHHHH
Confidence 5677888877543211 112346789999999999999999999999999743 47889999999999999
Q ss_pred HHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q 045142 184 LLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGF 263 (316)
Q Consensus 184 ~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~ 263 (316)
+++++|+++++..........++.|+++|+++++++++|++.|++||.+..+.|+.++++|+++|++++++|++|+++|+
T Consensus 81 ~~~i~g~~~~~~~~~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G~ 160 (191)
T cd08760 81 LLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGL 160 (191)
T ss_pred HHHHHHHHHHHHhhccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999864122233579999999999999999999999999988889999999999999999999999999999
Q ss_pred cccCCC--CchhhhHHHHHHHHHHHHHHHHH
Q 045142 264 NILNPL--KIWRLVYACILVALGAIAAILEV 292 (316)
Q Consensus 264 ~~~~~~--~~~~~~~~~~~~~~~~~~~~lev 292 (316)
.+.+.+ +.+.++|.++++++.++++++|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (191)
T cd08760 161 DLAGAGTPKAWKIAYGVVVAVLALVYLILEI 191 (191)
T ss_pred HHhcCCcccchhhHHHHHHHHHHHHHHHHcC
Confidence 999877 77889999999999999888873
No 2
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-35 Score=282.61 Aligned_cols=309 Identities=44% Similarity=0.739 Sum_probs=256.4
Q ss_pred CceEEEEECCCCCCCCCCcEEEEEEcC-CCcEEEEEeeecccccccCCCCccceeccceeEeeCCE---EEEEEEEecC-
Q 045142 4 TRWVAWAINPTGKGMVGSQSLVAYRNP-NGILKAYTSPVMGYGTNLQEGNLSFQVPKISADFSNNE---MTIFATIVLP- 78 (316)
Q Consensus 4 ~gWva~GfS~~g~~M~gsd~vI~~~~~-~G~v~v~~~~~~g~~~p~~~~~~~~~l~~~s~~~~~g~---~t~~f~~~l~- 78 (316)
..|++++++|++.+|.++.++|+|.++ +|...+.++...++.+...+....+++.+....+.... ..++++.+++
T Consensus 70 ~~w~~~~~~p~~t~m~~~~~~va~~~~~~g~~~~~t~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~l~~ 149 (403)
T KOG4293|consen 70 SAWVAWAINPTGTGMVGSRALVAYAGSSSGATTVKTYVILGYSPSLVPALLSFTLGNVRAECNLRSSSPIGIFASFKLAG 149 (403)
T ss_pred ccccccccCCccccccccceeeeeeccccchhhceeeeecccchhhcccccceeeecCcchhhccCCCCceEEEEEEeec
Confidence 349999999998889999999999985 67778888888887654334444555555555443333 6678888888
Q ss_pred CCCCceeEEeeecCCCC-CCCCCCCCCCCCCCccceEEeeccCceec--cc--CCCCCcchhhHhhHHHHHHHHHHHHHH
Q 045142 79 KNMTTVSHVWQEGPVRG-DNHLGMHPLGGDNVKSMGTLDLLSGKVTT--TK--GGTSGTLHFKQVHGIINAVSWGFLMPV 153 (316)
Q Consensus 79 ~~~~~~~~IwA~G~~~~-~~~l~~H~~~~~~~~s~~~ldl~~g~~~~--~~--~s~~~~~~~~~~Hg~lm~~aw~~l~p~ 153 (316)
.+.+.++.+|+.|+... +.++.+|...+.+..+...+|++...++. ++ ....+..++...||++|.++|++++|+
T Consensus 150 ~~~~~~~~~w~~~~~~~~g~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~hgil~~~sw~il~p~ 229 (403)
T KOG4293|consen 150 ANGGKYSAVWQVGPTGSGGGRPKRHKLSGSNLASVTSLDLTSDIGELSITSEGNFNSSGLKLRMTHGILNALSWGILFPA 229 (403)
T ss_pred CCCceeEEEEEccCCccCCCCCccCccccCCccceeecccccccccccccccCcccCcchhccccHHHHhhhhhheeccc
Confidence 56778999999998753 68899999988766666667777643322 11 112344556667999999999999999
Q ss_pred HHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHHhhhcccCCC
Q 045142 154 GAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKE 233 (316)
Q Consensus 154 gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~ 233 (316)
|++.+||+|..+...+.||++|+.+|..++++.+.|+..+....+++.+..++.|..+|+.++++.++|++..++||.+.
T Consensus 230 g~i~ary~~~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~h~~~G~~~~~l~~lQ~~~~l~Rp~~~ 309 (403)
T KOG4293|consen 230 GAIIARYLRQKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSNESDGTVYSAHTDLGIILLVLAFLQPLALLLRPLPE 309 (403)
T ss_pred cceeEEEecccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEccCCCceeeeecccchhHHHHHHHHHHHHHHhcCCcc
Confidence 99999999997767899999999999999999999999998887776666679999999999999999999999999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhhcccCCCCchh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCccchh
Q 045142 234 HKYRIWWNFYHHSVGYAIIILSIFNIFEGFNILNPLKIWR-LVYACILVALGAIAAILEVVTRVMVIRQRRKIENPETNV 312 (316)
Q Consensus 234 ~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~lev~~~~~~~~~~~~~~~~~~~~ 312 (316)
++.|++||++|+..||..+++|++|++.|+.+.++...|. ++|+.+.+.+..+.+++|+.+|....+|.+..+.+++.-
T Consensus 310 ~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~ 389 (403)
T KOG4293|consen 310 SKIRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIKLGYGSILAVLGLIAVILEILSWRITIERPSPSSMSRTST 389 (403)
T ss_pred cCceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEEeeeeeEEEEechhhhhhhhheeeeeecccCccccccccc
Confidence 9999999999999999999999999999999999999998 799999999999999999999999888888777666543
No 3
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.93 E-value=4e-26 Score=187.41 Aligned_cols=124 Identities=35% Similarity=0.527 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh-hcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCC-CccccccchhhHHH
Q 045142 138 VHGIINAVSWGFLMPVGAITARY-MKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSH-GIQHSTHRTIGILL 215 (316)
Q Consensus 138 ~Hg~lm~~aw~~l~p~gil~aR~-~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~-~~~~~~H~~lG~~~ 215 (316)
+||++|.+||++++|.|++++|+ .+.. .++.|+++|+.+|+++++++++|+++++...++.+ ...+++|+++|+++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~--~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~ 78 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFL--SKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAA 78 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHH
Confidence 69999999999999999999997 3332 46899999999999999999999999998766542 33579999999999
Q ss_pred HHHHHHHHHhhhcccCCC---CCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q 045142 216 LVLGFIQVLALKLRPKKE---HKYRIWWNFYHHSVGYAIIILSIFNIFEGF 263 (316)
Q Consensus 216 ~~l~~~Q~l~~~~rp~~~---~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~ 263 (316)
+++.++|++.|++++.++ .+.|+.++++|+++|++++++|++|+++|+
T Consensus 79 ~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 79 FVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999998887765 677899999999999999999999999985
No 4
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.90 E-value=1.9e-23 Score=172.93 Aligned_cols=128 Identities=32% Similarity=0.467 Sum_probs=109.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCC-CccccccchhhHHHH
Q 045142 138 VHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSH-GIQHSTHRTIGILLL 216 (316)
Q Consensus 138 ~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~-~~~~~~H~~lG~~~~ 216 (316)
+|++||.+||++++|.|++++|+.+..+.+++.|+++|+.+|.+++++.++|+++++...++.+ ...+++|+++|++++
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~ 80 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATF 80 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHH
Confidence 6999999999999999999999744212257889999999999999999999999987665432 234799999999999
Q ss_pred HHHHHHHHhhhcc---cCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 217 VLGFIQVLALKLR---PKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 217 ~l~~~Q~l~~~~r---p~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~ 265 (316)
++.++|++.|+++ |.++.+.|+.++++|+++|++++++|++|+.+|+..
T Consensus 81 ~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~ 132 (137)
T PF03188_consen 81 VLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTE 132 (137)
T ss_pred HHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988754 445556788999999999999999999999999953
No 5
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.89 E-value=9.3e-23 Score=167.79 Aligned_cols=126 Identities=24% Similarity=0.311 Sum_probs=109.1
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCC-CccccccchhhHH
Q 045142 136 KQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSH-GIQHSTHRTIGIL 214 (316)
Q Consensus 136 ~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~-~~~~~~H~~lG~~ 214 (316)
+++|+++|.++|++++|.|++.+|++|.. .++.|+++|+.+|++++++.++|+.+++...++.+ ...++.|+++|++
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~--~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~ 79 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLL--TKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLA 79 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhcccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHH
Confidence 57899999999999999999999998765 36789999999999999999999999998764332 2346999999999
Q ss_pred HHHHHHHHHHhhhcc---cCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q 045142 215 LLVLGFIQVLALKLR---PKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGF 263 (316)
Q Consensus 215 ~~~l~~~Q~l~~~~r---p~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~ 263 (316)
++++.++|++.|+.+ |....+.|+.++++|+++|+++++++++|+++|+
T Consensus 80 ~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 80 TVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999987643 4444445889999999999999999999999985
No 6
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.86 E-value=1.6e-21 Score=161.80 Aligned_cols=132 Identities=20% Similarity=0.123 Sum_probs=114.3
Q ss_pred CcchhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCC-Cccccccc
Q 045142 131 GTLHFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSH-GIQHSTHR 209 (316)
Q Consensus 131 ~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~-~~~~~~H~ 209 (316)
+...++++|+.||.+++.++++.|+++.|..|. .++.|..+|+.+|.+++++.++|+...+...++.+ ...++.|+
T Consensus 3 ~~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~---~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHS 79 (144)
T cd08766 3 NKGLIFNVHPVLMVIGFIFLAGEAILAYKTVPG---SREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHS 79 (144)
T ss_pred CCcceeeccHHHHHHHHHHHHHHHHHHhhcccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHH
Confidence 345789999999999999999999999997663 36678899999999999999999999888765543 23479999
Q ss_pred hhhHHHHHHHHHHHHhhh---cccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 210 TIGILLLVLGFIQVLALK---LRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 210 ~lG~~~~~l~~~Q~l~~~---~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~ 265 (316)
|+|++++++..+|.+.|+ +.|....+.|+...++|+++|+++++++++++.+|+..
T Consensus 80 wlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~e 138 (144)
T cd08766 80 WLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLE 138 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998664 57876556788889999999999999999999999975
No 7
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.86 E-value=4.2e-21 Score=166.80 Aligned_cols=134 Identities=19% Similarity=0.177 Sum_probs=110.4
Q ss_pred cchhhHhhHHHHHHHHHHHHHHHHHHHHhhcccc-cCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCC-Cccccccc
Q 045142 132 TLHFKQVHGIINAVSWGFLMPVGAITARYMKVFQ-SADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSH-GIQHSTHR 209 (316)
Q Consensus 132 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~-~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~-~~~~~~H~ 209 (316)
.+.++++|+++|+++|++++|.|++..|-..... .+++.|+++|+.+|.++++++++|+.+++...++.+ .+.++.|+
T Consensus 17 ~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~ 96 (183)
T cd08761 17 GTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHG 96 (183)
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhH
Confidence 3567999999999999999999999765322111 246789999999999999999999999887654432 23469999
Q ss_pred hhhHHHHHHHHHHHHhhhc---ccCCCC--CCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 210 TIGILLLVLGFIQVLALKL---RPKKEH--KYRIWWNFYHHSVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 210 ~lG~~~~~l~~~Q~l~~~~---rp~~~~--~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~ 265 (316)
++|++++++.++|++.|+. +|.... ++|+.++++|+++|++++++|++|+.+|++.
T Consensus 97 ~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 97 ILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999997763 343332 5778899999999999999999999999987
No 8
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.84 E-value=1.6e-20 Score=159.74 Aligned_cols=133 Identities=21% Similarity=0.141 Sum_probs=114.7
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCC-Cccccccchh
Q 045142 133 LHFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSH-GIQHSTHRTI 211 (316)
Q Consensus 133 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~-~~~~~~H~~l 211 (316)
.+.+++|++||+++++++...++++.|..+....++..|+.+|..+|.++++++++|+...+...++.+ ...++.|+|+
T Consensus 32 ~~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWl 111 (179)
T cd08762 32 SKNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWV 111 (179)
T ss_pred CCceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHH
Confidence 347999999999999999999999998666543346678999999999999999999999998776653 2247999999
Q ss_pred hHHHHHHHHHHHHhhh---cccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 212 GILLLVLGFIQVLALK---LRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 212 G~~~~~l~~~Q~l~~~---~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~ 265 (316)
|++++++..+|.+.|+ +.|....+.|....++|+.+|+.+++++++++.+|+..
T Consensus 112 Gl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~e 168 (179)
T cd08762 112 GICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINE 168 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998665 46666666788889999999999999999999999985
No 9
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=99.84 E-value=2.3e-20 Score=155.71 Aligned_cols=133 Identities=17% Similarity=0.108 Sum_probs=114.3
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCC-Cccccccchh
Q 045142 133 LHFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSH-GIQHSTHRTI 211 (316)
Q Consensus 133 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~-~~~~~~H~~l 211 (316)
...+++|++||.+++.+++..++++.|..+..+..++.+..+|+.+|.+++++.++|+...+...++.+ ...++.|+|+
T Consensus 9 ~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwl 88 (153)
T cd08765 9 AAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWV 88 (153)
T ss_pred CCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHH
Confidence 458899999999999999999999998654432246778999999999999999999999888766553 2347999999
Q ss_pred hHHHHHHHHHHHHhhh---cccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 212 GILLLVLGFIQVLALK---LRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 212 G~~~~~l~~~Q~l~~~---~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~ 265 (316)
|++++++..+|.+.|+ +.|....+.|+...++|+++|+++++|+++++.+|+..
T Consensus 89 Gl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~e 145 (153)
T cd08765 89 GLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITE 145 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998664 46776556789999999999999999999999999975
No 10
>PLN02351 cytochromes b561 family protein
Probab=99.83 E-value=5.9e-20 Score=162.54 Aligned_cols=126 Identities=15% Similarity=0.064 Sum_probs=107.6
Q ss_pred hh-HhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCC--Cccccccchh
Q 045142 135 FK-QVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSH--GIQHSTHRTI 211 (316)
Q Consensus 135 ~~-~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~--~~~~~~H~~l 211 (316)
.+ ++|++||+++|+++.+.||+++|.+|. .++.|+.+|+.+|.++++++++|+...+. ++.+ ...++.|+|+
T Consensus 49 iffn~HP~lMviGfi~L~geAILvYR~~~~---~~k~~K~lH~~Lh~~Ali~~vvGl~a~fh--~~~~~i~nlySLHSWl 123 (242)
T PLN02351 49 VYAVLHPLLMVIGFILISGEAILVHRWLPG---SRKTKKSVHLWLQGLALASGVFGIWTKFH--GQDGIVANFYSLHSWM 123 (242)
T ss_pred eeecccHHHHHHHHHHHHHHHHHHhhcccc---cchHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCccchhHHHHHH
Confidence 45 799999999999999999999998864 34569999999999999999999998333 3221 2347999999
Q ss_pred hHHHHHHHHHHHHhhh---cccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 212 GILLLVLGFIQVLALK---LRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 212 G~~~~~l~~~Q~l~~~---~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~ 265 (316)
|++++++..+|.+.|+ +.|......|....++|.++|+.+++++++++.+|+..
T Consensus 124 Gl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~E 180 (242)
T PLN02351 124 GLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLE 180 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998664 46666566788889999999999999999999999985
No 11
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.82 E-value=2.2e-19 Score=157.86 Aligned_cols=131 Identities=17% Similarity=0.115 Sum_probs=112.5
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccC--C-Cccccccc
Q 045142 133 LHFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKS--H-GIQHSTHR 209 (316)
Q Consensus 133 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~--~-~~~~~~H~ 209 (316)
...+++|+++|.+++.+++..|+++.|.+|.. .++.++.+|+.+|.++++++++|+..++...++. + ...++.|+
T Consensus 21 ~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~--~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHS 98 (214)
T cd08764 21 GLQFNWHPLLMVLGLIFLYGNSILVYRVFRNT--RKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHS 98 (214)
T ss_pred CceEeecHHHHHHHHHHHHHHHHHHhccCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHH
Confidence 45689999999999999999999999987753 3566788999999999999999999887665444 2 23479999
Q ss_pred hhhHHHHHHHHHHHHhhh---cccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 210 TIGILLLVLGFIQVLALK---LRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 210 ~lG~~~~~l~~~Q~l~~~---~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~ 265 (316)
|+|++++++..+|.+.|+ +.|......|+...++|+++|+++++++++++.+|+..
T Consensus 99 wlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~e 157 (214)
T cd08764 99 WLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITE 157 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998664 57776556778888899999999999999999999975
No 12
>PLN02810 carbon-monoxide oxygenase
Probab=99.81 E-value=4.6e-19 Score=155.65 Aligned_cols=130 Identities=19% Similarity=0.133 Sum_probs=114.9
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCC-Cccccccchh
Q 045142 133 LHFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSH-GIQHSTHRTI 211 (316)
Q Consensus 133 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~-~~~~~~H~~l 211 (316)
+..+++|++||.+++.++...|+++.|.+|. .++.++.+|+.+|.++++++++|+...|...++.+ ...++.|+|+
T Consensus 44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~---~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWl 120 (231)
T PLN02810 44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLPL---KKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWL 120 (231)
T ss_pred CceeeehHHHHHHHHHHHhhHHHHHhhcccc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHH
Confidence 4589999999999999999999999987664 25667899999999999999999999998776653 2347999999
Q ss_pred hHHHHHHHHHHHHhhh---cccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 212 GILLLVLGFIQVLALK---LRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 212 G~~~~~l~~~Q~l~~~---~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~ 265 (316)
|++++++..+|.+.|+ +.|......|....++|.++|..+++++++++.+|+..
T Consensus 121 Gl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~E 177 (231)
T PLN02810 121 GIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLE 177 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998665 67887767788888999999999999999999999985
No 13
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.81 E-value=2.8e-19 Score=148.21 Aligned_cols=130 Identities=20% Similarity=0.136 Sum_probs=113.0
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCC-Cccccccchhh
Q 045142 134 HFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSH-GIQHSTHRTIG 212 (316)
Q Consensus 134 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~-~~~~~~H~~lG 212 (316)
..+++|+.+|.+++.+++..++++.|..+.. .++.+.++|+.+|.+++++.++|+...+...++.+ ...++.|+|+|
T Consensus 5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~--~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlG 82 (143)
T cd08763 5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNE--TKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCG 82 (143)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHH
Confidence 3899999999999999999999999876543 35667899999999999999999999887665543 23479999999
Q ss_pred HHHHHHHHHHHHhhh---cccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 213 ILLLVLGFIQVLALK---LRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 213 ~~~~~l~~~Q~l~~~---~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~ 265 (316)
++++++..+|.+.|+ +.|....+.|..++++|+++|+++++++++++.+|+..
T Consensus 83 l~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~e 138 (143)
T cd08763 83 ILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTE 138 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998664 57776667789999999999999999999999999974
No 14
>PLN02680 carbon-monoxide oxygenase
Probab=99.80 E-value=8.3e-19 Score=155.15 Aligned_cols=132 Identities=17% Similarity=0.093 Sum_probs=113.1
Q ss_pred CcchhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCC-Cccccccc
Q 045142 131 GTLHFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSH-GIQHSTHR 209 (316)
Q Consensus 131 ~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~-~~~~~~H~ 209 (316)
++...+++|++||.+++.+++..+++..|..|. .++.+..+|+.+|.+++++.++|+...+...++.+ ...++.|+
T Consensus 42 ~~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~---~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHS 118 (232)
T PLN02680 42 NKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVPG---TKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHS 118 (232)
T ss_pred CCcceEechHHHHHHHHHHHHHHHHhccccccc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHH
Confidence 335588999999999999999999999876553 46678899999999999999999999888776553 23479999
Q ss_pred hhhHHHHHHHHHHHHhhh---cccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 210 TIGILLLVLGFIQVLALK---LRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 210 ~lG~~~~~l~~~Q~l~~~---~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~ 265 (316)
|+|++++++..+|.+.|+ +.|....+.|+...++|+++|+++++++++++.+|+..
T Consensus 119 WlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~E 177 (232)
T PLN02680 119 WLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILE 177 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998664 57776556677788999999999999999999999985
No 15
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=99.76 E-value=2.3e-18 Score=150.82 Aligned_cols=131 Identities=20% Similarity=0.173 Sum_probs=115.7
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCC-Cccccccchh
Q 045142 133 LHFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSH-GIQHSTHRTI 211 (316)
Q Consensus 133 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~-~~~~~~H~~l 211 (316)
++.+++|++||+++|.++.-.++++.|.+|.. .++.-+-+|..+|+++++++++|+...|...+..+ ...++.|+|+
T Consensus 52 ~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~--~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWl 129 (245)
T KOG1619|consen 52 NKEFNLHPVLMVIGFIYLQGEAILIYRVFRYT--SKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWL 129 (245)
T ss_pred chhcCcchHHHHHHHHHhccceeeeeehhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHH
Confidence 57899999999999999999999999987764 35667889999999999999999999998766553 2347999999
Q ss_pred hHHHHHHHHHHHHhhh---cccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 212 GILLLVLGFIQVLALK---LRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 212 G~~~~~l~~~Q~l~~~---~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~ 265 (316)
|+++++++.+|.+.|| +.|.-..+.|....++|+.+|..+++++++|+.+|+..
T Consensus 130 Gl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~e 186 (245)
T KOG1619|consen 130 GLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLE 186 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997654 67877778999999999999999999999999999964
No 16
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).
Probab=99.74 E-value=3.5e-17 Score=137.12 Aligned_cols=112 Identities=29% Similarity=0.474 Sum_probs=91.1
Q ss_pred CceEEEEECCCCCCCCCCcEEEEEEcCCCcEEEEEeeecccccccCCCCccceeccc-eeEeeCCEEEEEEEEecCCCC-
Q 045142 4 TRWVAWAINPTGKGMVGSQSLVAYRNPNGILKAYTSPVMGYGTNLQEGNLSFQVPKI-SADFSNNEMTIFATIVLPKNM- 81 (316)
Q Consensus 4 ~gWva~GfS~~g~~M~gsd~vI~~~~~~G~v~v~~~~~~g~~~p~~~~~~~~~l~~~-s~~~~~g~~t~~f~~~l~~~~- 81 (316)
.||+|||||+++ +|.|+|++|||.+++|++.+.++++++++.|..|..++ +.+. ++.++||.++|+|+|++.+++
T Consensus 27 ~gwvaiGfs~~~-~M~~~d~vv~~~~~~g~~~v~d~~~~~~~~~~~d~~~~--~~~~~~~~~~~g~~~~~f~R~l~t~d~ 103 (148)
T smart00664 27 NGWVAIGFSPDG-QMAGADVVVAWVDNNGRVTVKDYYTPGYGPPVEDDQQD--VTDLLSATYENGVLTCRFRRKLGSNDP 103 (148)
T ss_pred CCEEEEEECCCC-CcCCCCEEEEEEcCCCCEEEEEEEcCCCCCCCcCcccc--cccceeEEEECCEEEEEEEEEccCCCc
Confidence 899999999996 99999999999987799999999999999887665443 3333 677899999999999998644
Q ss_pred -------CceeEEeeecCCCCCCCCCCCCCCCCCCccceEEeeccCc
Q 045142 82 -------TTVSHVWQEGPVRGDNHLGMHPLGGDNVKSMGTLDLLSGK 121 (316)
Q Consensus 82 -------~~~~~IwA~G~~~~~~~l~~H~~~~~~~~s~~~ldl~~g~ 121 (316)
.+.+++||.|+..+++.+.+|+.. ..+..++++.++.
T Consensus 104 ~d~~~~~~~~~~i~a~G~~~~~~~~~~H~~~---~~~~~~i~~~~~~ 147 (148)
T smart00664 104 DDKSLLDGTVHVLWAKGPLSPNGGLGYHDFS---LKSTKKVCLSSCT 147 (148)
T ss_pred cccccCCCeEEEEEEECCCCCCCCeeecccc---ccCceEEEeccCC
Confidence 367899999984346789999975 2346788887753
No 17
>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein.
Probab=99.69 E-value=3.3e-16 Score=121.77 Aligned_cols=100 Identities=51% Similarity=0.822 Sum_probs=93.6
Q ss_pred CCCCcEEEEEEcCC-CcEEEEEeeecccccccCCCCccceeccceeEeeCCEEEEEEEEecCCCCCceeEEeeecCCCCC
Q 045142 18 MVGSQSLVAYRNPN-GILKAYTSPVMGYGTNLQEGNLSFQVPKISADFSNNEMTIFATIVLPKNMTTVSHVWQEGPVRGD 96 (316)
Q Consensus 18 M~gsd~vI~~~~~~-G~v~v~~~~~~g~~~p~~~~~~~~~l~~~s~~~~~g~~t~~f~~~l~~~~~~~~~IwA~G~~~~~ 96 (316)
|.|++++|++++++ |.+.+.+|.++++..+..+..+++++.+.+++++++.++||++.+||++.+++|++|+.|+...+
T Consensus 1 M~GtqALvAf~~~~~G~~~v~T~~i~sy~~~l~~~~lsf~v~~lsae~~~~~~~IfAtl~Lp~n~t~vnhVWQ~G~~v~g 80 (101)
T PF04526_consen 1 MVGTQALVAFKNSNGGSVTVYTYNITSYSPSLQPGPLSFDVSDLSAEYSGGEMTIFATLKLPGNSTSVNHVWQVGPSVQG 80 (101)
T ss_pred CCCceEEEEEeCCCCceEEEEEEeecccccccccccccccccceEeEEeCCEEEEEEEEEcCCCCcEEEEEeCcCCccCC
Confidence 99999999999988 88999999999998867777789999999999999999999999999999999999999998768
Q ss_pred CCCCCCCCCCCCCccceEEee
Q 045142 97 NHLGMHPLGGDNVKSMGTLDL 117 (316)
Q Consensus 97 ~~l~~H~~~~~~~~s~~~ldl 117 (316)
+.+..|+..+.|+.|..+|||
T Consensus 81 g~p~~H~~~~~Nl~S~gtldl 101 (101)
T PF04526_consen 81 GSPQPHPTSGANLQSKGTLDL 101 (101)
T ss_pred CccccCCCCCccccceEEecC
Confidence 999999999999999999997
No 18
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=99.54 E-value=6.4e-14 Score=113.52 Aligned_cols=84 Identities=27% Similarity=0.394 Sum_probs=69.9
Q ss_pred CceEEEEECCCCCCCCCCcEEEEEEcCCCcEEEEEee-ecccccccCCCC--ccceeccceeEeeCCEEEEEEEEecCCC
Q 045142 4 TRWVAWAINPTGKGMVGSQSLVAYRNPNGILKAYTSP-VMGYGTNLQEGN--LSFQVPKISADFSNNEMTIFATIVLPKN 80 (316)
Q Consensus 4 ~gWva~GfS~~g~~M~gsd~vI~~~~~~G~v~v~~~~-~~g~~~p~~~~~--~~~~l~~~s~~~~~g~~t~~f~~~l~~~ 80 (316)
.||+|+|||+++ +|.++|+++||.+ +|++.+.+++ ..++..|..++. +++.+. +..+++|.++|.|+|++.+.
T Consensus 29 ~~w~aiGfs~~~-~M~~~Dvv~~~~~-~~~~~v~d~~~~~~~~~p~~d~~~~~~~~~~--~~~~~~g~~~~~F~R~l~t~ 104 (124)
T PF03351_consen 29 NGWVAIGFSDDG-GMGGSDVVVCWVD-DGKVYVQDYYSTGGYGPPTVDDQGSQDIQLL--SGSYSNGTTTCSFTRPLNTG 104 (124)
T ss_pred CCEEEEEEcccc-CCCCCcEEEEEEc-CCceeEEEeeccCcccceeeccccCCcEEEE--EEEEECCEEEEEEEEEccCC
Confidence 899999999987 8999999999998 7999999999 899988877743 444444 56678999999999998752
Q ss_pred ---------CCceeEEeeec
Q 045142 81 ---------MTTVSHVWQEG 91 (316)
Q Consensus 81 ---------~~~~~~IwA~G 91 (316)
+.+.++|||+|
T Consensus 105 d~~d~~l~~~~~~~~i~A~G 124 (124)
T PF03351_consen 105 DSQDYDLDSNGTYYVIWAYG 124 (124)
T ss_pred CCCccEecCCCcEEEEEEeC
Confidence 34568999987
No 19
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=99.44 E-value=7.6e-13 Score=104.29 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=77.2
Q ss_pred CCcchhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCCCc-ccccc
Q 045142 130 SGTLHFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSHGI-QHSTH 208 (316)
Q Consensus 130 ~~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~-~~~~H 208 (316)
++.+....+|+++|.++|++++|+|+++.+. | . ++|.++|++.++++++|+.++....++.+++ .++.|
T Consensus 12 ~~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~-~------s---r~~~~~q~~~~~l~~~g~~~g~~~~~~~p~lyp~n~H 81 (105)
T PF10348_consen 12 SPHRSALYAHIVLMTLAWVILYPIGLVLGNA-R------S---RWHLPVQTVFLVLMILGLFLGSVYNGSTPDLYPNNAH 81 (105)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHc-c------c---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHH
Confidence 3457789999999999999999999998663 2 2 4599999999999999999998877666554 67999
Q ss_pred chhhHHHHHHHHHHHHhhhcc
Q 045142 209 RTIGILLLVLGFIQVLALKLR 229 (316)
Q Consensus 209 ~~lG~~~~~l~~~Q~l~~~~r 229 (316)
.++|+++++++++|++.++++
T Consensus 82 ~k~g~il~~l~~~q~~~gv~~ 102 (105)
T PF10348_consen 82 GKMGWILFVLMIVQVILGVIL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999877654
No 20
>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose. It is a hemoflavoenzyme that is comprised of a b-type cytochrome domain linked to a large flavodehydrogenase domain. The 2 domains can be separated proteolytically. The cytochrome domain folds as a beta sandwich and complexes a heme molecule.
Probab=99.38 E-value=6.3e-12 Score=108.41 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=84.2
Q ss_pred CCCCceEEEEECCCCCCCCCCcEEEEEEcCCCcEEEEEeeecccccc-cCCCCccceeccceeEeeCCEEEEEEEEe---
Q 045142 1 MKPTRWVAWAINPTGKGMVGSQSLVAYRNPNGILKAYTSPVMGYGTN-LQEGNLSFQVPKISADFSNNEMTIFATIV--- 76 (316)
Q Consensus 1 ~~~~gWva~GfS~~g~~M~gsd~vI~~~~~~G~v~v~~~~~~g~~~p-~~~~~~~~~l~~~s~~~~~g~~t~~f~~~--- 76 (316)
|.+.||+|+|+ |++|.|+.++|+|.|.+ +|+++.|+.+||.+| .++++..++++..+. .++++++..|+|+
T Consensus 49 P~~~gW~gls~---Gg~M~~~~L~vaw~~g~-~Vt~S~R~atg~~~P~~y~g~a~~t~L~gs~-vn~t~~t~~~rC~nC~ 123 (184)
T cd00241 49 PRASGWIGLAL---GGAMTNSLLLVAWPNGN-QIVSSTRYATGYTLPDAYTGPATITQLPSSS-VNSTHWKLVFRCQNCT 123 (184)
T ss_pred cCCCCeEEEee---cccCCCCeEEEEEcCCC-eEEEeEEEecCccCCCccCCCceEEECCCCc-EeCCEEEEEEEeCCCc
Confidence 67799999999 88999999999999744 599999999999988 566666777776654 4899999777663
Q ss_pred -cC-CC----CCceeEEeeecCC------CCCCCCCCCCCCCCCCccceEEeeccCc
Q 045142 77 -LP-KN----MTTVSHVWQEGPV------RGDNHLGMHPLGGDNVKSMGTLDLLSGK 121 (316)
Q Consensus 77 -l~-~~----~~~~~~IwA~G~~------~~~~~l~~H~~~~~~~~s~~~ldl~~g~ 121 (316)
++ .+ .+...++||+++. +++..|.+|+..| .+.+||....
T Consensus 124 ~W~~gg~~~~t~~~~~~wA~~~~~~~~p~~~~a~i~~Hd~~G-----~f~~dl~~A~ 175 (184)
T cd00241 124 SWNNGGGIDPTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFG-----FFGINLSDAQ 175 (184)
T ss_pred ccCCCCccCcCCCceEEEEECCCCCCCCCCcccCCceecCCc-----ceeEechhcc
Confidence 33 11 1122688998522 2367799999766 6899998644
No 21
>KOG3568 consensus Dopamine beta-monooxygenase [Amino acid transport and metabolism]
Probab=98.36 E-value=6.4e-07 Score=85.80 Aligned_cols=98 Identities=13% Similarity=0.080 Sum_probs=71.3
Q ss_pred CCceEEEEECCCCCCCCCCcEEEEEEcCCCcEEEEEeeecccccccCCCCccceeccceeEeeCCEEEEEEEEecCC---
Q 045142 3 PTRWVAWAINPTGKGMVGSQSLVAYRNPNGILKAYTSPVMGYGTNLQEGNLSFQVPKISADFSNNEMTIFATIVLPK--- 79 (316)
Q Consensus 3 ~~gWva~GfS~~g~~M~gsd~vI~~~~~~G~v~v~~~~~~g~~~p~~~~~~~~~l~~~s~~~~~g~~t~~f~~~l~~--- 79 (316)
+.+|++||||+.| .|.+||++++|.+ .+..++.|++.+....-..|.++|++|+... .+...+++.|+|++.+
T Consensus 66 t~~~v~fGfSdrG-~lanaDivv~~n~-g~~~~~~DayTn~d~qi~~D~QQDyqll~~~--e~~~~~~i~frRkl~TCDp 141 (603)
T KOG3568|consen 66 TAGYVGFGFSDRG-ALANADIVVGGNA-GGRPYLQDAYTNADGQIKKDAQQDYQLLYAM--ENSTHTIIEFRRKLHTCDP 141 (603)
T ss_pred cCCEEEEecCCcC-CcccCcEEEEecc-CCchhhhhhhcCCCCceecchhhhhHHHhhh--ccCCccEEEEecccCcCCc
Confidence 4689999999998 9999999999964 4557888988876666666777888887543 3455566789997653
Q ss_pred -----CCCceeEEeeecCCCC-CCCCCCCCC
Q 045142 80 -----NMTTVSHVWQEGPVRG-DNHLGMHPL 104 (316)
Q Consensus 80 -----~~~~~~~IwA~G~~~~-~~~l~~H~~ 104 (316)
.+++++++||+-..+. +.+..+|+.
T Consensus 142 ~Dy~i~dgTv~vv~a~~eed~r~l~~v~~~~ 172 (603)
T KOG3568|consen 142 NDYSITDGTVRVVWAYLEEDARELGPVYHDS 172 (603)
T ss_pred cceeccCCeEEEEEEEeccchhhcccccccc
Confidence 3578899999754321 233445553
No 22
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=97.29 E-value=0.0036 Score=55.53 Aligned_cols=98 Identities=13% Similarity=0.030 Sum_probs=66.2
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhhhhccccC-CCccccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 168 DPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKS-HGIQHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 168 ~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~-~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
+...|.+|..+|++|+++...=-++.+...... +....-.|..+..+.+++.++-....+-.+.+..+..+-+...|-|
T Consensus 20 ~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSw 99 (214)
T cd08764 20 PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSW 99 (214)
T ss_pred CCceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHH
Confidence 345799999999999876544333334432211 1112348999999999888777554443333322233556678999
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 045142 247 VGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~ 265 (316)
+|.++++|-..|...|+..
T Consensus 100 lGl~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 100 LGLTAVILFSLQWVGGFVS 118 (214)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999843
No 23
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=97.13 E-value=0.034 Score=47.87 Aligned_cols=97 Identities=14% Similarity=0.043 Sum_probs=64.7
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhhhhcc-cc--CCCccccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHH
Q 045142 168 DPAWFYAHIICQSSAYLLGIAGAGTGIYLG-NK--SHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYH 244 (316)
Q Consensus 168 ~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~-~~--~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H 244 (316)
++..|.+|..+|++++++.-.=.++.+... ++ ++......|..+=.+.+++.++-....+-.+... ..+-.-.+|
T Consensus 31 ~~~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~--~~~nlySlH 108 (179)
T cd08762 31 SSKNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH--HTANLYSLH 108 (179)
T ss_pred CCCceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccchhhHH
Confidence 344799999999999887644344444321 11 1111246888888877777776665555433322 123344579
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 045142 245 HSVGYAIIILSIFNIFEGFNIL 266 (316)
Q Consensus 245 ~~~G~~~~~l~~~ni~lG~~~~ 266 (316)
-|+|..++++-..|...|+..+
T Consensus 109 SWlGl~t~~Lf~lQ~~~Gf~~f 130 (179)
T cd08762 109 SWVGICTVALFTCQWVMGFTSF 130 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999765
No 24
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=97.09 E-value=0.0079 Score=50.14 Aligned_cols=95 Identities=19% Similarity=0.116 Sum_probs=64.0
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHH
Q 045142 169 PAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVG 248 (316)
Q Consensus 169 ~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G 248 (316)
...|.+|..+|++|+++...=-++.+.....++......|..+=++.+++.++-....+..+... ..+-+..+|-|+|
T Consensus 5 ~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~SlHSwlG 82 (144)
T cd08766 5 GLIFNVHPVLMVIGFIFLAGEAILAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYSLHSWLG 82 (144)
T ss_pred cceeeccHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccccccHHHHHH
Confidence 35799999999999866554344445432222222345888888877777766655444322221 2344667899999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 045142 249 YAIIILSIFNIFEGFNI 265 (316)
Q Consensus 249 ~~~~~l~~~ni~lG~~~ 265 (316)
.+++++-..|...|+..
T Consensus 83 l~t~~L~~lQ~~~G~~~ 99 (144)
T cd08766 83 IGTISLFGLQWLFGFVT 99 (144)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999863
No 25
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=97.09 E-value=0.0077 Score=50.14 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=68.3
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhhhhccc-cCCCccccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHHH
Q 045142 171 WFYAHIICQSSAYLLGIAGAGTGIYLGN-KSHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVGY 249 (316)
Q Consensus 171 wf~~H~~~q~~~~~~~~~g~~l~~~~~~-~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G~ 249 (316)
=|.+|..+|++|+++...-.++.+.... .++......|.++.++.+++.++-....+..+.+. ..+-+...|-|+|.
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~--~~~hf~SlHswlGl 83 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQAN--GYPDMYSLHSWCGI 83 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHHHHHH
Confidence 5889999999998876654454443322 22223346999999999988887766555433332 33567789999999
Q ss_pred HHHHHHHHHHHHhhccc
Q 045142 250 AIIILSIFNIFEGFNIL 266 (316)
Q Consensus 250 ~~~~l~~~ni~lG~~~~ 266 (316)
+++++-..|...|+..+
T Consensus 84 ~t~~L~~lQ~~~G~~~f 100 (143)
T cd08763 84 LTFVLYFLQWLIGFSFF 100 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
No 26
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=97.00 E-value=0.01 Score=48.37 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=64.5
Q ss_pred hhhhHhHHHHHHHHHHHHHHhhhhcc-ccCCCccccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHHHH
Q 045142 172 FYAHIICQSSAYLLGIAGAGTGIYLG-NKSHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVGYA 250 (316)
Q Consensus 172 f~~H~~~q~~~~~~~~~g~~l~~~~~-~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G~~ 250 (316)
|.+|..+|.+++++...--++..... ...+......|..+.++.+++.++-....+..+.. +.++-+...|.++|.+
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~--~~~~h~~s~Hs~lGl~ 79 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNA--GGIANLYSLHSWLGLA 79 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCcccchhHHHHHHHH
Confidence 56899999999875444333333332 11112224689999998888877776666554332 2235567789999999
Q ss_pred HHHHHHHHHHHhhccc
Q 045142 251 IIILSIFNIFEGFNIL 266 (316)
Q Consensus 251 ~~~l~~~ni~lG~~~~ 266 (316)
++++..+|...|+...
T Consensus 80 ~~~l~~~q~~~G~~~~ 95 (131)
T cd08554 80 TVLLFLLQFLSGFVLF 95 (131)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 27
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=96.97 E-value=0.014 Score=47.53 Aligned_cols=94 Identities=21% Similarity=0.169 Sum_probs=63.2
Q ss_pred hhHhHHHHHHHHHH-HHHHhhhhcccc-CCCccccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHHHHH
Q 045142 174 AHIICQSSAYLLGI-AGAGTGIYLGNK-SHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVGYAI 251 (316)
Q Consensus 174 ~H~~~q~~~~~~~~-~g~~l~~~~~~~-~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G~~~ 251 (316)
+|..++.+++++.. .|+.+.-..... .+..-...|..+.++.+++.++-...++...... .++-++..|.++|.++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~--~~~~~~s~H~~lGl~~ 78 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNES--GIANFYSLHSWLGLAA 78 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCCccchhHHHHHHH
Confidence 58999999976544 444443211111 1112246899999888887776666555443322 2356778899999999
Q ss_pred HHHHHHHHHHhhcccCCC
Q 045142 252 IILSIFNIFEGFNILNPL 269 (316)
Q Consensus 252 ~~l~~~ni~lG~~~~~~~ 269 (316)
+++..+|...|+.....+
T Consensus 79 ~~l~~~Q~~~G~~~~~~~ 96 (129)
T smart00665 79 FVLAGLQWLSGFLRPLPP 96 (129)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999976543
No 28
>PLN02680 carbon-monoxide oxygenase
Probab=96.91 E-value=0.039 Score=49.48 Aligned_cols=126 Identities=18% Similarity=0.179 Sum_probs=76.6
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHHHH
Q 045142 171 WFYAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVGYA 250 (316)
Q Consensus 171 wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G~~ 250 (316)
=|.+|..+|++|+++...-.++.+.....++......|..+=.+.+++.++-....+-.+.. +..+-+..+|-|+|.+
T Consensus 46 ~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfySlHSWlGl~ 123 (232)
T PLN02680 46 IFNVHPVLMVIGLVLLNGEAMLAYKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYSLHSWLGLA 123 (232)
T ss_pred eEechHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCccccccHHHHHHHH
Confidence 68999999999999855444444433222222234578877777777666555443322222 2235566789999999
Q ss_pred HHHHHHHHHHHhhccc-CCC---------CchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045142 251 IIILSIFNIFEGFNIL-NPL---------KIWRLVYACILVALGAIAAILEVVTRVMV 298 (316)
Q Consensus 251 ~~~l~~~ni~lG~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~lev~~~~~~ 298 (316)
++++-..|...|+..+ -+. ..|-...+..+.+++++...+.+..-..+
T Consensus 124 t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek~~f 181 (232)
T PLN02680 124 CLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILEKATF 181 (232)
T ss_pred HHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998763 111 11222334444455555555655554433
No 29
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.91 E-value=0.014 Score=50.84 Aligned_cols=97 Identities=16% Similarity=0.098 Sum_probs=67.8
Q ss_pred CcchhhhhHhHHHHHHHHHH-HHHHhhhhccccCCCccccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 168 DPAWFYAHIICQSSAYLLGI-AGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 168 ~~~wf~~H~~~q~~~~~~~~-~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
....++.|..+|+++..+.. +|+.++-......+.+ ...|..+=++.+++.++-...++... .+.+..++..|.+
T Consensus 32 ~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~~~~~~-~~~H~~~q~~~~~~~i~g~~~~~~~~---~~~~~~~~~~H~~ 107 (191)
T cd08760 32 SDTLIKAHGVLMAIAWGILMPIGALLARYFLLGDPVW-FYLHAGLQLLAVLLAIAGFVLGIVLV---QGGGGSLNNAHAI 107 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh-HHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcCcchh
Confidence 45578999999999977655 4555442221112223 36899888877777776665555432 2234567889999
Q ss_pred HHHHHHHHHHHHHHHhhcccCC
Q 045142 247 VGYAIIILSIFNIFEGFNILNP 268 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~~~ 268 (316)
+|.+++++.++|.++|+.....
T Consensus 108 lGl~~~~l~~lQ~~~G~~~~~~ 129 (191)
T cd08760 108 LGIIVLALAILQPLLGLLRPHP 129 (191)
T ss_pred hhHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999976543
No 30
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=96.87 E-value=0.02 Score=49.33 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=44.8
Q ss_pred ccccccchhhHHHHHHHHHHHHhh-hcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 045142 203 IQHSTHRTIGILLLVLGFIQVLAL-KLRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNIL 266 (316)
Q Consensus 203 ~~~~~H~~lG~~~~~l~~~Q~l~~-~~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~ 266 (316)
...++|-+.|+.+..++.++.... .+.+. +++.++..|..++.+++++-..|..+|.+..
T Consensus 112 lf~spH~~~Gl~~~~L~~~s~al~~~i~~g----~~~~~R~lHi~lN~~~l~Lf~~q~itG~~il 172 (175)
T PF13301_consen 112 LFWSPHLWAGLAVVGLMAFSAALVPQIQKG----NRPWARRLHIYLNSLALLLFAWQAITGWRIL 172 (175)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHHHHccC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999998888886433 33321 2356778999999999999999999988754
No 31
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.69 E-value=0.024 Score=49.07 Aligned_cols=96 Identities=16% Similarity=0.233 Sum_probs=66.8
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhhhhcccc----CCCccccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhH
Q 045142 168 DPAWFYAHIICQSSAYLLGIAGAGTGIYLGNK----SHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFY 243 (316)
Q Consensus 168 ~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~----~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~ 243 (316)
....|.+|..+|.+++.+.....++.+...+. ++......|.++-.+.+++.++-....+..... +.++-++-.
T Consensus 17 ~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~--~~~~hf~s~ 94 (183)
T cd08761 17 GTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKER--NGKPHFTSW 94 (183)
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCCccch
Confidence 34578999999999988766555544432211 112224799999998888777665444432222 234567788
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 045142 244 HHSVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 244 H~~~G~~~~~l~~~ni~lG~~~ 265 (316)
|.|+|.+++++...|...|+..
T Consensus 95 H~~lGl~~~~l~~~Q~~~G~~~ 116 (183)
T cd08761 95 HGILGLVTVILIVLQALGGLAL 116 (183)
T ss_pred hHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999964
No 32
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=96.53 E-value=0.01 Score=48.55 Aligned_cols=95 Identities=18% Similarity=0.223 Sum_probs=67.6
Q ss_pred CcchhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccc---cC---CCcc
Q 045142 131 GTLHFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGN---KS---HGIQ 204 (316)
Q Consensus 131 ~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~---~~---~~~~ 204 (316)
+++...+.|.+++.++..+.. +|+.++-+.|... +.+.....|..+-++.+++++.=.++|+.... .. +...
T Consensus 30 ~~~~~~~~H~~lq~l~~~~~~-~G~~~~~~~~~~~-~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~ 107 (137)
T PF03188_consen 30 SRKWWFRIHWILQVLALVFAI-IGFVAIFINKNRN-GKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIW 107 (137)
T ss_pred ccchHHHHHHHHHHHHHHHHH-HHHHHHHHhcccc-CCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHH
Confidence 456788999999999977666 5555544444432 24566788999999988888877777764321 11 1112
Q ss_pred ccccchhhHHHHHHHHHHHHhhh
Q 045142 205 HSTHRTIGILLLVLGFIQVLALK 227 (316)
Q Consensus 205 ~~~H~~lG~~~~~l~~~Q~l~~~ 227 (316)
...|.++|.+++++.+.+...|+
T Consensus 108 ~~~H~~~G~~~~~l~~~~i~~G~ 130 (137)
T PF03188_consen 108 NKWHRWLGYLIYVLAIATIFLGL 130 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999998776
No 33
>PLN02351 cytochromes b561 family protein
Probab=96.47 E-value=0.27 Score=44.34 Aligned_cols=125 Identities=14% Similarity=0.070 Sum_probs=73.7
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHHHH
Q 045142 171 WFYAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVGYA 250 (316)
Q Consensus 171 wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G~~ 250 (316)
.|.+|..+|++|+++.-.=-++.+.....++......|..+=.+.+++.++-... .-+..++..+-+-.+|-|+|..
T Consensus 50 ffn~HP~lMviGfi~L~geAILvYR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a---~fh~~~~~i~nlySLHSWlGl~ 126 (242)
T PLN02351 50 YAVLHPLLMVIGFILISGEAILVHRWLPGSRKTKKSVHLWLQGLALASGVFGIWT---KFHGQDGIVANFYSLHSWMGLI 126 (242)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHH---HHhcccCCccchhHHHHHHHHH
Confidence 4579999999998876654445454432222223457776666665555444333 1111111123455679999999
Q ss_pred HHHHHHHHHHHhhcccCCC----------CchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045142 251 IIILSIFNIFEGFNILNPL----------KIWRLVYACILVALGAIAAILEVVTRVMV 298 (316)
Q Consensus 251 ~~~l~~~ni~lG~~~~~~~----------~~~~~~~~~~~~~~~~~~~~lev~~~~~~ 298 (316)
++++=.+|-..|+..+-.| ..|-..++..+.+++++..++.+..-..+
T Consensus 127 tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F 184 (242)
T PLN02351 127 CVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEKLTF 184 (242)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999764222 12444445555555555555555544433
No 34
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=96.30 E-value=0.075 Score=47.51 Aligned_cols=120 Identities=18% Similarity=0.144 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHhhccc-ccCCc-chhhhhHhHHHHHHHHHHHHHHh-hhhc-cccCCCccccccchhhHHHHHHH
Q 045142 144 AVSWGFLMPVGAITARYMKVF-QSADP-AWFYAHIICQSSAYLLGIAGAGT-GIYL-GNKSHGIQHSTHRTIGILLLVLG 219 (316)
Q Consensus 144 ~~aw~~l~p~gil~aR~~k~~-~~~~~-~wf~~H~~~q~~~~~~~~~g~~l-~~~~-~~~~~~~~~~~H~~lG~~~~~l~ 219 (316)
.+++....-.+..+..|...+ |+.++ .-|.+|..+|++|++..- |..+ .+.. ...++....-.|..+=++.+++.
T Consensus 25 l~G~i~v~lvl~W~~~yr~Glaw~~~~~~~fnlHP~lMviGfI~l~-GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~ 103 (245)
T KOG1619|consen 25 LLGFITVVLVLYWVNTYRGGLAWSSSPNKEFNLHPVLMVIGFIYLQ-GEAILIYRVFRYTSKKVSKLIHLGLHIIALVLA 103 (245)
T ss_pred HHHHHHHHHHHHHHHHcCCccCCCCCcchhcCcchHHHHHHHHHhc-cceeeeeehhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443222 22233 468899999999887654 3333 3333 23333344568999988888888
Q ss_pred HHHHHhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 045142 220 FIQVLALKLRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNIL 266 (316)
Q Consensus 220 ~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~ 266 (316)
++-....|..+...+ -.-+-.+|-|+|..++++=.+|-..|+.-+
T Consensus 104 i~gl~avf~~hn~~~--i~NfySLHSWlGl~~v~ly~~Q~v~GF~tf 148 (245)
T KOG1619|consen 104 IIGLCAVFDSHNLVG--IANFYSLHSWLGLCVVILYSLQWVFGFFTF 148 (245)
T ss_pred HHHHHHHHHHhhhcC--ccceeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877766665444433 234556899999999999999999998864
No 35
>PLN02810 carbon-monoxide oxygenase
Probab=96.29 E-value=0.066 Score=47.81 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=76.5
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHH
Q 045142 169 PAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVG 248 (316)
Q Consensus 169 ~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G 248 (316)
+.=|.+|..+|++|+++.-.=-++.+.....++......|..+=.+.+++.++-....|-.+... ..+-+-.+|-|+|
T Consensus 44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~--~i~nlySLHSWlG 121 (231)
T PLN02810 44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNES--GIANLYSLHSWLG 121 (231)
T ss_pred CceeeehHHHHHHHHHHHhhHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCceeeHHHHHH
Confidence 34689999999999887665455555432212222346888877777777666655544333322 2245567999999
Q ss_pred HHHHHHHHHHHHHhhccc---CCC-------CchhhhHHHHHHHHHHHHHHHHHHH
Q 045142 249 YAIIILSIFNIFEGFNIL---NPL-------KIWRLVYACILVALGAIAAILEVVT 294 (316)
Q Consensus 249 ~~~~~l~~~ni~lG~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~lev~~ 294 (316)
..++++=..|-..|+..+ +.+ ..|-..++..+..+++....+.+..
T Consensus 122 l~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~E 177 (231)
T PLN02810 122 IGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLE 177 (231)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999432 222 1233344444444555444444444
No 36
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=95.96 E-value=0.15 Score=42.87 Aligned_cols=96 Identities=21% Similarity=0.154 Sum_probs=61.5
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhhhhcc-c--cCCCccccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHH
Q 045142 169 PAWFYAHIICQSSAYLLGIAGAGTGIYLG-N--KSHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHH 245 (316)
Q Consensus 169 ~~wf~~H~~~q~~~~~~~~~g~~l~~~~~-~--~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~ 245 (316)
+.=|.+|..+|++++++.-.=.++.+... . .++......|.++=.+.+++.++-....+..+... ..+-+..+|-
T Consensus 9 ~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~~~fySlHS 86 (153)
T cd08765 9 AAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NIPNMYSLHS 86 (153)
T ss_pred CCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHH
Confidence 44689999999999887433333333211 0 11222235777766666666555544433332222 2356778999
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 045142 246 SVGYAIIILSIFNIFEGFNIL 266 (316)
Q Consensus 246 ~~G~~~~~l~~~ni~lG~~~~ 266 (316)
|+|.+++++-..|...|+..+
T Consensus 87 wlGl~t~~l~~lQ~~~Gf~~f 107 (153)
T cd08765 87 WVGLAAVILYPLQLVLGISVY 107 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998765
No 37
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=95.10 E-value=0.095 Score=44.70 Aligned_cols=93 Identities=18% Similarity=0.115 Sum_probs=57.5
Q ss_pred hhhHhHHHHHHHHHHHHHHhhhh--ccccC-C--CccccccchhhHHHHHHHHHHHHhhhcc------------------
Q 045142 173 YAHIICQSSAYLLGIAGAGTGIY--LGNKS-H--GIQHSTHRTIGILLLVLGFIQVLALKLR------------------ 229 (316)
Q Consensus 173 ~~H~~~q~~~~~~~~~g~~l~~~--~~~~~-~--~~~~~~H~~lG~~~~~l~~~Q~l~~~~r------------------ 229 (316)
.+|+..-++-+++.+.|+.+... ..... . ......|..+|++.+++.++..+..+.+
T Consensus 10 ~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (188)
T PF00033_consen 10 LLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYR 89 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhh
Confidence 46776666666666667766422 11111 1 1124788888888888888888766655
Q ss_pred cC--CCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 230 PK--KEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 230 p~--~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~ 265 (316)
+. ++.+..+.+|...+..-.+++++..+...+|+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~ 127 (188)
T PF00033_consen 90 LFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM 127 (188)
T ss_dssp TT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122335567888888888888888888888888
No 38
>COG2717 Predicted membrane protein [Function unknown]
Probab=93.97 E-value=1.2 Score=39.39 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhcc---ccC---CCccccccchhhHHHHH
Q 045142 144 AVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLG---NKS---HGIQHSTHRTIGILLLV 217 (316)
Q Consensus 144 ~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~---~~~---~~~~~~~H~~lG~~~~~ 217 (316)
.+.|.+++=+.....|+.+ .+.+.++=+.+-+.++..++.=+..-+... +-+ .+..+.+=-.+|++.++
T Consensus 51 al~fLl~~la~tp~~~~~~-----~~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~~~~~~~~~d~~~rpyitiG~iafl 125 (209)
T COG2717 51 ALIFLLVTLAVTPLARLLK-----QPKLIRIRRALGLWAFFYALLHFTAYLVLDLGLDLALLGLDLLKRPYITIGMIAFL 125 (209)
T ss_pred HHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhHHHHHhHHHHHHHHHHH
Confidence 3334444444445556543 345566667777666665554332221110 000 11123455566666666
Q ss_pred HHHHHHHhhh--cccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccCCCCchhhhHHHHHHHH
Q 045142 218 LGFIQVLALK--LRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNILNPLKIWRLVYACILVAL 283 (316)
Q Consensus 218 l~~~Q~l~~~--~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~~~~~~~~~~~~~~~~~~ 283 (316)
+++.-.+..+ .+.+. -+.|+.+|++ ++.+++|+.+-...+.. .+..+.+.|.++.+.+
T Consensus 126 ll~pLalTS~k~~~rrl----G~rW~~LHrL-vYl~~~L~~lH~~~s~K---~~~~~~vlY~ii~~~l 185 (209)
T COG2717 126 LLIPLALTSFKWVRRRL----GKRWKKLHRL-VYLALILGALHYLWSVK---IDMPEPVLYAIIFAVL 185 (209)
T ss_pred HHHHHHHHhhHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHH
Confidence 5555444332 22111 1679999985 68888888877777332 2233556677665444
No 39
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=93.65 E-value=0.72 Score=36.29 Aligned_cols=89 Identities=20% Similarity=0.284 Sum_probs=54.3
Q ss_pred CCcchhhhhHhHHHHHHHHHH-HHHHhhhhccccCCCccccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHH
Q 045142 167 ADPAWFYAHIICQSSAYLLGI-AGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHH 245 (316)
Q Consensus 167 ~~~~wf~~H~~~q~~~~~~~~-~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~ 245 (316)
+.+...+.|..+|+++.++.. +|++++..- + ++|.-.=++-+++.++-.+.+...... ...-+.+-.|.
T Consensus 13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~~---s-----r~~~~~q~~~~~l~~~g~~~g~~~~~~--~p~lyp~n~H~ 82 (105)
T PF10348_consen 13 PHRSALYAHIVLMTLAWVILYPIGLVLGNAR---S-----RWHLPVQTVFLVLMILGLFLGSVYNGS--TPDLYPNNAHG 82 (105)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHcc---c-----hHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCHHH
Confidence 356789999999999866543 466654331 1 234433233333333333333222111 11134688999
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 045142 246 SVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 246 ~~G~~~~~l~~~ni~lG~~~ 265 (316)
-+|.+++++.++|.++|+..
T Consensus 83 k~g~il~~l~~~q~~~gv~~ 102 (105)
T PF10348_consen 83 KMGWILFVLMIVQVILGVIL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999753
No 40
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=93.55 E-value=1.1 Score=38.05 Aligned_cols=130 Identities=12% Similarity=0.121 Sum_probs=79.0
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHH---hhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhc--------------
Q 045142 134 HFKQVHGIINAVSWGFLMPVGAITAR---YMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYL-------------- 196 (316)
Q Consensus 134 ~~~~~Hg~lm~~aw~~l~p~gil~aR---~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~-------------- 196 (316)
..+..| +++.+++.+++..|..+.. ............+.+|..+..+-+++.+.=+...+..
T Consensus 7 ~~R~~H-w~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T PF00033_consen 7 FTRLLH-WLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQI 85 (188)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHH
Confidence 356788 7889999999999998763 1122222345678899988776655555444443333
Q ss_pred ----c-c----cCCCccccccchhhHHHHHHHHHHHHhhhcc--------cCCC---CCCccchhhHHHHHHHHHHHHHH
Q 045142 197 ----G-N----KSHGIQHSTHRTIGILLLVLGFIQVLALKLR--------PKKE---HKYRIWWNFYHHSVGYAIIILSI 256 (316)
Q Consensus 197 ----~-~----~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~r--------p~~~---~~~R~~~~~~H~~~G~~~~~l~~ 256 (316)
. . ...+..+...+..-++++.+.+++++.|+.. +... .........+|.+.+.++.++-.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~ 165 (188)
T PF00033_consen 86 PQYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFII 165 (188)
T ss_dssp HHHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0111224566777777778888888866644 1111 12335678899999888887776
Q ss_pred HHHHHhhc
Q 045142 257 FNIFEGFN 264 (316)
Q Consensus 257 ~ni~lG~~ 264 (316)
+=++.++.
T Consensus 166 ~Hi~~a~~ 173 (188)
T PF00033_consen 166 IHIYAAIF 173 (188)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 41
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=93.31 E-value=1.4 Score=37.85 Aligned_cols=60 Identities=22% Similarity=0.148 Sum_probs=47.9
Q ss_pred ccccchhhHHHHHHHHHHHHhhhc---ccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 045142 205 HSTHRTIGILLLVLGFIQVLALKL---RPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNILNPL 269 (316)
Q Consensus 205 ~~~H~~lG~~~~~l~~~Q~l~~~~---rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~~~~ 269 (316)
...|..+|.++++++.+..++|.. +.. -+.+..-|-|.|.++..|-.++..+.-++...+
T Consensus 80 r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~-----~~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~ 142 (175)
T PF13301_consen 80 RDRHYRLGFALLAFMGLGALGGQLGTYRQN-----GKLFWSPHLWAGLAVVGLMAFSAALVPQIQKGN 142 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHcC-----CCCccCchHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 579999999999999999887742 221 135556699999999999999999988887543
No 42
>COG5658 Predicted integral membrane protein [Function unknown]
Probab=92.82 E-value=0.87 Score=40.04 Aligned_cols=73 Identities=8% Similarity=-0.018 Sum_probs=55.4
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCc
Q 045142 236 YRIWWNFYHHSVGYAIIILSIFNIFEGFNILNPLKIWRLVYACILVALGAIAAILEVVTRVMVIRQRRKIENP 308 (316)
Q Consensus 236 ~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~lev~~~~~~~~~~~~~~~~ 308 (316)
.+..|++.|+++|-.+++.+.+....+.......+-+...+....+.++...+.+.+..+...-+++++++..
T Consensus 41 d~~~wk~a~~~l~pl~vi~gl~~~~~~~l~~~~~~~~~~v~~~~~~~Il~li~~ls~~l~~~g~d~~~~~~~~ 113 (204)
T COG5658 41 DQAMWKKAGLFLGPLLVIGGLVTRYMSLLAGGQGQMLLAVALFAAVLILFLILLLSAILVALGYDIPGRRFPM 113 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccc
Confidence 3467999999999999999999988887776665556666666666666666667777777777777777643
No 43
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=91.37 E-value=0.32 Score=29.98 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=26.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhcccC
Q 045142 237 RIWWNFYHHSVGYAIIILSIFNIFEGFNILN 267 (316)
Q Consensus 237 R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~~ 267 (316)
|+.+..+|+++|..+.+.-.+-+.+|+.+..
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~~ 32 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGALLNF 32 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678889999999999999888888887653
No 44
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=91.14 E-value=1.1 Score=41.30 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHhhhhcccc---CCCccccccchhhHHHHHHHHHHHHhhhc---ccCCCCCCccchhhHHHHHHHH
Q 045142 177 ICQSSAYLLGIAGAGTGIYLGNK---SHGIQHSTHRTIGILLLVLGFIQVLALKL---RPKKEHKYRIWWNFYHHSVGYA 250 (316)
Q Consensus 177 ~~q~~~~~~~~~g~~l~~~~~~~---~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~---rp~~~~~~R~~~~~~H~~~G~~ 250 (316)
.+..+..+++++|++-.+.+-.+ .+.+..--|-..|+...+-.++-.+.-+. |..-..+.|+.|.++
T Consensus 156 ~Liav~~~~~li~~iw~~~Ll~~~~~~p~y~VAGhVm~Gla~iCtsLIaLVAtI~RQirN~ys~~Er~~W~~l------- 228 (347)
T PF10951_consen 156 ILIAVPILCALIGWIWAIVLLSSSDEHPAYFVAGHVMFGLACICTSLIALVATIARQIRNTYSEKERWKWPKL------- 228 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccceehhHHHhhHHHHHHHHHHHHHHHHHHHhccccHHHhhhhHHH-------
Confidence 34455667777788877765432 23333467888888888777666665554 444445566666654
Q ss_pred HHHHHHHHHHHhhccc--CCC-----CchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 045142 251 IIILSIFNIFEGFNIL--NPL-----KIWRLVYACILVALGAIAAILEVVTRVMVIRQRRKI 305 (316)
Q Consensus 251 ~~~l~~~ni~lG~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~lev~~~~~~~~~~~~~ 305 (316)
++++|-+++..|+.+. +.+ .++...-.+.++.-.-.=++|-.--|++.+|-.+|.
T Consensus 229 Vl~mGsi~~l~Gl~vl~~~~~~~~~~~G~ilIGLGlvCySIsSKViLLA~vWr~~f~LAnRI 290 (347)
T PF10951_consen 229 VLVMGSISILWGLYVLLASSGPANNAPGYILIGLGLVCYSISSKVILLAKVWRREFKLANRI 290 (347)
T ss_pred HHHHhhHHHHhhhheEEecCCcccCCcceeeeehhhHHHHHHHHHHHHHHHHHhhcchhccC
Confidence 4555666666666653 111 233332222232222233344445588888877764
No 45
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=91.07 E-value=0.83 Score=35.67 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=24.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 045142 237 RIWWNFYHHSVGYAIIILSIFNIFEGFNIL 266 (316)
Q Consensus 237 R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~ 266 (316)
|+.....|+++||+-.++..+....|+.+.
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i~ 31 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALFIA 31 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 455667899999999999988888888775
No 46
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=90.13 E-value=6.8 Score=33.04 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 045142 246 SVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 246 ~~G~~~~~l~~~ni~lG~~~ 265 (316)
....+.+++..+.+.+|+-+
T Consensus 103 ~~~~~~~~~~~~~~iTG~~~ 122 (182)
T PF01292_consen 103 IVHWVLYLLLLLLPITGLLL 122 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555666655
No 47
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=89.94 E-value=9.5 Score=33.66 Aligned_cols=43 Identities=28% Similarity=0.328 Sum_probs=24.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcccCCCCchhhhHHHHHHHHHH
Q 045142 239 WWNFYHHSVGYAIIILSIFNIFEGFNILNPLKIWRLVYACILVALGA 285 (316)
Q Consensus 239 ~~~~~H~~~G~~~~~l~~~ni~lG~~~~~~~~~~~~~~~~~~~~~~~ 285 (316)
.|+.+|+. .+.+++++.+=.+....... .-...|.++++.+++
T Consensus 145 ~Wk~LH~l-~Y~a~~L~~~H~~~~~k~~~---~~~~~y~~~~~~ll~ 187 (205)
T PRK05419 145 RWQKLHRL-VYLIAILAPLHYLWSVKSDS---PEPLIYAAIVAVLLA 187 (205)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhcccc---ccHHHHHHHHHHHHH
Confidence 69999988 55555677777555432211 112456666554433
No 48
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=88.97 E-value=11 Score=31.82 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=10.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHHH
Q 045142 136 KQVHGIINAVSWGFLMPVGAIT 157 (316)
Q Consensus 136 ~~~Hg~lm~~aw~~l~p~gil~ 157 (316)
+..| +++.+++.+++..|..+
T Consensus 7 r~~H-W~~a~~~i~l~~tG~~~ 27 (182)
T PF01292_consen 7 RILH-WLNALSFIALIATGLWI 27 (182)
T ss_pred HHHH-HHHHHHHHHHHHHHHHH
Confidence 3445 44555555555555544
No 49
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=88.05 E-value=10 Score=32.85 Aligned_cols=27 Identities=33% Similarity=0.488 Sum_probs=21.0
Q ss_pred ccccchhhHHHHHHHHHHHHhhhcccC
Q 045142 205 HSTHRTIGILLLVLGFIQVLALKLRPK 231 (316)
Q Consensus 205 ~~~H~~lG~~~~~l~~~Q~l~~~~rp~ 231 (316)
++.|..+|+.+++++++-.+.-+..|.
T Consensus 47 ~~~Hks~Gi~vl~L~v~Rl~wrl~~~~ 73 (181)
T COG3038 47 YELHKSIGILVLALMVLRLLWRLRNPA 73 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 578999999999988888876665443
No 50
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=86.01 E-value=16 Score=31.70 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=22.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcccC
Q 045142 239 WWNFYHHSVGYAIIILSIFNIFEGFNILN 267 (316)
Q Consensus 239 ~~~~~H~~~G~~~~~l~~~ni~lG~~~~~ 267 (316)
.+|..-++.-.+++++..+.+.+|+.+..
T Consensus 111 ~~n~~~k~~~~~l~~~~~~~~lTG~~~~~ 139 (211)
T TIGR02125 111 GYNPLQFVAYFGFIVLILFMILTGLALYY 139 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677777777888888999999988753
No 51
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=85.78 E-value=1.3 Score=27.84 Aligned_cols=29 Identities=17% Similarity=0.191 Sum_probs=23.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 237 RIWWNFYHHSVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 237 R~~~~~~H~~~G~~~~~l~~~ni~lG~~~ 265 (316)
|+.+...|+|+|.++-++-.+-++.|..+
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~ 29 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAVM 29 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 46778899999999888888888877654
No 52
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=85.71 E-value=4.4 Score=31.81 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHhhhcccCCC----CCCccchhhHHHHHHHHHHHHHHHHHH
Q 045142 211 IGILLLVLGFIQVLALKLRPKKE----HKYRIWWNFYHHSVGYAIIILSIFNIF 260 (316)
Q Consensus 211 lG~~~~~l~~~Q~l~~~~rp~~~----~~~R~~~~~~H~~~G~~~~~l~~~ni~ 260 (316)
+|.+.++++.++.+.+ .|+..- +........+|+++|+.+++++.+=..
T Consensus 1 ~G~~a~~~l~~~~~l~-~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~ 53 (125)
T PF01794_consen 1 LGILAFALLPLVFLLG-LRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHGV 53 (125)
T ss_pred CHHHHHHHHHHHHHHH-HhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666544 333211 111223445999999999888887654
No 53
>PRK11513 cytochrome b561; Provisional
Probab=85.09 E-value=4.8 Score=34.53 Aligned_cols=60 Identities=22% Similarity=0.108 Sum_probs=34.7
Q ss_pred ccccchhhHHHHHHHHHHHHhhhcccCCCCCCc-cch-hhHHHHHHHHHHHHHHHHHHHhhc
Q 045142 205 HSTHRTIGILLLVLGFIQVLALKLRPKKEHKYR-IWW-NFYHHSVGYAIIILSIFNIFEGFN 264 (316)
Q Consensus 205 ~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R-~~~-~~~H~~~G~~~~~l~~~ni~lG~~ 264 (316)
+..|..+|+++++++++-.+..+..+.+..... +.| +..=+..-.+++++-++...+|+.
T Consensus 42 ~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~~~~A~~~H~~LY~lli~~plsG~~ 103 (176)
T PRK11513 42 NMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMMTGLAHLGHLVIYLLFIALPVIGLV 103 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999987766443321111 222 211122234555555555555554
No 54
>PF13630 SdpI: SdpI/YhfL protein family
Probab=80.81 E-value=2.5 Score=30.56 Aligned_cols=33 Identities=30% Similarity=0.291 Sum_probs=28.2
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhhcccC
Q 045142 235 KYRIWWNFYHHSVGYAIIILSIFNIFEGFNILN 267 (316)
Q Consensus 235 ~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~~ 267 (316)
+....|+..|+..|...++.|++.+..++....
T Consensus 18 ~s~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~~ 50 (76)
T PF13630_consen 18 KSDENWKKAHRFAGKIFIIGGIVLLIIGIIILF 50 (76)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344789999999999999999999988888654
No 55
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=80.27 E-value=21 Score=29.13 Aligned_cols=56 Identities=18% Similarity=0.333 Sum_probs=37.0
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045142 236 YRIWWNFYHHSVGYAIIILSIFNIFEGFNILNPLKIWRLVYACILVALGAIAAILEVVTRVM 297 (316)
Q Consensus 236 ~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~lev~~~~~ 297 (316)
.++.+..+..+.||.++.+=+..+.++. .......+.++.++.++++++....-.+
T Consensus 57 i~~~~~FL~~~~GRGlfyif~G~l~~~~------~~~~~i~g~~~~~~G~~~i~l~~~~~~~ 112 (136)
T PF08507_consen 57 IRKYFGFLYSYIGRGLFYIFLGTLCLGQ------SILSIIIGLLLFLVGVIYIILGFFCPIK 112 (136)
T ss_pred HHHhHhHHHhHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6678888999999998877666555555 1122344555556666677777766544
No 56
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=79.93 E-value=31 Score=35.84 Aligned_cols=93 Identities=17% Similarity=0.103 Sum_probs=43.5
Q ss_pred chhhhhHhHHHHHHHHHHHHHHhhhhccccCCC--------------cc---ccccchhhHHHHHHHHHHHHhhh-cccC
Q 045142 170 AWFYAHIICQSSAYLLGIAGAGTGIYLGNKSHG--------------IQ---HSTHRTIGILLLVLGFIQVLALK-LRPK 231 (316)
Q Consensus 170 ~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~--------------~~---~~~H~~lG~~~~~l~~~Q~l~~~-~rp~ 231 (316)
...++-..+..+++..++.|++-|=..+..... +. +++=..+. +.+++.++|.+.|+ +.-.
T Consensus 388 ~~~~~~~il~~~gi~sii~G~lyG~fFG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-lsl~iGvi~i~~g~~l~~~ 466 (646)
T PRK05771 388 GLKRLLKILIYLGISTIIWGLLTGSFFGFSLPIFLPGGYLELPEGYPSLSTENDVMTILI-ISLLIGVIHLFLGLLLGFI 466 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcCccccccccccccccCCccccCCCccHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 345566666667777766677666333321110 10 01111222 23345667765443 2111
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q 045142 232 KEHKYRIWWNFYHHSVGYAIIILSIFNIFEGF 263 (316)
Q Consensus 232 ~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~ 263 (316)
..-+.+....-+-..+|..++++|.+-..++.
T Consensus 467 ~~~~~~~~~~a~~~~~~w~l~~~g~~~~~~~~ 498 (646)
T PRK05771 467 NNVRKGDYKDAFLAQLGWLLILLGILLIVLGG 498 (646)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00012223333444577777777777666654
No 57
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=79.07 E-value=39 Score=29.44 Aligned_cols=84 Identities=13% Similarity=0.174 Sum_probs=41.1
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHHhhh---------cccCCCC-CCc
Q 045142 168 DPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVLALK---------LRPKKEH-KYR 237 (316)
Q Consensus 168 ~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~---------~rp~~~~-~~R 237 (316)
+|+|..+-..+-++++...+-|+..-|. .--+..|++++++..+ .+|+ .|+..+. ++.
T Consensus 92 dp~lm~lDssLl~lg~~aLlsgitaff~----------~nA~~~GlItlll~a~--vgGfamy~my~y~yr~~ad~sqr~ 159 (226)
T COG4858 92 DPWLMWLDSSLLFLGAMALLSGITAFFQ----------KNAQVYGLITLLLTAV--VGGFAMYIMYYYAYRMRADNSQRP 159 (226)
T ss_pred CceEEEecccHHHHHHHHHHHHHHHHHh----------cCCcchhHHHHHHHHH--hhhHHHHHHHHHHHHhhcccccCC
Confidence 5666666666655555554444443221 1234667777655433 2221 2454433 344
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhc
Q 045142 238 IWWNFYHHSVGYAIIILSIFNIFEGFN 264 (316)
Q Consensus 238 ~~~~~~H~~~G~~~~~l~~~ni~lG~~ 264 (316)
..|+.+-...+..++=+++. +..++.
T Consensus 160 ~~~K~~lv~~~sm~lWi~v~-i~t~~l 185 (226)
T COG4858 160 GTWKYLLVAVLSMLLWIAVM-IATVFL 185 (226)
T ss_pred chHHHHHHHHHHHHHHHHHH-HHHhhC
Confidence 56677666655544333332 444443
No 58
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.83 E-value=19 Score=33.46 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=38.0
Q ss_pred hhhHHHHHH-HHHHHHhh---h--cccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccCC
Q 045142 210 TIGILLLVL-GFIQVLAL---K--LRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNILNP 268 (316)
Q Consensus 210 ~lG~~~~~l-~~~Q~l~~---~--~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~~~ 268 (316)
-+|++++.| .+.|.+-- + +--.+..|.+..|+-.-...-..++++++.++..|+.-.++
T Consensus 217 rlgLvLl~LhYftellfHi~rlfyf~dek~~k~fslwa~vF~l~Rl~tliiaVlt~gfgla~~en 281 (374)
T KOG1608|consen 217 RLGLVLLTLHYFTELLFHIARLFYFSDEKYQKLFSLWAAVFVLGRLGTLIIAVLTVGFGLAGAEN 281 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 467777766 55555421 1 22233445667777666666667889999999999886543
No 59
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=77.41 E-value=11 Score=28.32 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=24.2
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 045142 235 KYRIWWNFYHHSVGYAIIILSIFNIFEGFNIL 266 (316)
Q Consensus 235 ~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~ 266 (316)
+.|+ +.-+|..+|..+.+.-.+=+++|+.+.
T Consensus 56 ~~r~-~~dlH~~~G~~~~~~ll~~a~TG~~~~ 86 (88)
T PF13703_consen 56 SKRR-WFDLHRVLGLWFLPFLLVIALTGLFFS 86 (88)
T ss_pred ccCh-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445 667999999999988888888887653
No 60
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=76.86 E-value=36 Score=30.17 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=25.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 045142 238 IWWNFYHHSVGYAIIILSIFNIFEGFNIL 266 (316)
Q Consensus 238 ~~~~~~H~~~G~~~~~l~~~ni~lG~~~~ 266 (316)
..+|...+.....+++++.+.+++|+-++
T Consensus 107 gk~N~~QKl~y~~i~~~~~~~i~TGl~l~ 135 (217)
T PRK10179 107 GKYNAGQKMMFWSIMSMIFVLLVTGVIIW 135 (217)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999988888899999999999886
No 61
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=76.73 E-value=6.4 Score=31.37 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=42.2
Q ss_pred cccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhccc----CCCCchhhhHHHHHH
Q 045142 206 STHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNIL----NPLKIWRLVYACILV 281 (316)
Q Consensus 206 ~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~----~~~~~~~~~~~~~~~ 281 (316)
-.|-++|.++.++.++-++.++++|.+.- ++.|.+++..+++..+..+.+=...- +++..|.+.|.....
T Consensus 29 iinliiG~vT~l~VLvtii~afvf~~~~p------~p~~iffavcI~l~~~s~~lLI~WYR~gdl~Pkfr~li~~~~~~i 102 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAFVFPQDPP------KPLHIFFAVCILLICISAILLIFWYRQGDLDPKFRYLIYYNCFSI 102 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheEEecCCCC------CceEEehHHHHHHHHHHHHhheeehhcCCCChhHHHHHHHHHHHH
Confidence 46777888888777777777777664432 24566777666666666555533321 233345555544443
Q ss_pred HHH
Q 045142 282 ALG 284 (316)
Q Consensus 282 ~~~ 284 (316)
+++
T Consensus 103 vll 105 (118)
T PF10856_consen 103 VLL 105 (118)
T ss_pred HHH
Confidence 333
No 62
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=75.76 E-value=3.2 Score=33.56 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=20.5
Q ss_pred cchhhHH--HHHHHHHHHHHHHHHHHhhcccCCCC
Q 045142 238 IWWNFYH--HSVGYAIIILSIFNIFEGFNILNPLK 270 (316)
Q Consensus 238 ~~~~~~H--~~~G~~~~~l~~~ni~lG~~~~~~~~ 270 (316)
.-|.++| .-+|-++++.|++--.+.+.+....+
T Consensus 44 ~e~s~Yrci~pfG~vili~GvvvT~vays~n~~~s 78 (129)
T PF15099_consen 44 AEWSCYRCIMPFGVVILIAGVVVTAVAYSFNSHGS 78 (129)
T ss_pred CCceEEEEEEEehHHHHHHhhHhheeeEeecCCcc
Confidence 3344444 35788888888877666666644433
No 63
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=75.10 E-value=5.4 Score=31.46 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCc
Q 045142 276 YACILVALGAIAAILEVVTRVMVIRQRRKIENP 308 (316)
Q Consensus 276 ~~~~~~~~~~~~~~lev~~~~~~~~~~~~~~~~ 308 (316)
..+++++++++.++.-+..|++.+||+|..+..
T Consensus 3 Ll~il~llLll~l~asl~~wr~~~rq~k~~~~~ 35 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWRMKQRQKKAGQYS 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Confidence 345666666777889999999998888866543
No 64
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=74.79 E-value=26 Score=32.49 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=60.4
Q ss_pred ccccchhhHHHHHHHHHHHHhhh--cc-cC-----CCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccCC--CCchhh
Q 045142 205 HSTHRTIGILLLVLGFIQVLALK--LR-PK-----KEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNILNP--LKIWRL 274 (316)
Q Consensus 205 ~~~H~~lG~~~~~l~~~Q~l~~~--~r-p~-----~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~~~--~~~~~~ 274 (316)
-+.|..+|+..-++..+-.+.-+ ++ |. .+++.+++=+.+-++....+.++|.+.++..++.-.. +..-.+
T Consensus 43 ig~rg~vGI~fav~f~i~lvltLvnL~KHG~~~lp~eKRf~~iGRRwqWyW~~fv~a~~~iS~f~~IDVDR~yl~~~pii 122 (296)
T PF10361_consen 43 IGTRGSVGIAFAVLFAIALVLTLVNLRKHGRLYLPLEKRFYPIGRRWQWYWMLFVCACGLISLFMSIDVDRYYLQGLPII 122 (296)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhcccccchhHHHHHHHHHHHHHHHhhheeeeecHHhcccccHH
Confidence 37899999988876665543222 22 22 1222334445677788889999999999999886421 111112
Q ss_pred --hHHHHHHHHHHHHHHHHHHH-HHHHHhhcc
Q 045142 275 --VYACILVALGAIAAILEVVT-RVMVIRQRR 303 (316)
Q Consensus 275 --~~~~~~~~~~~~~~~lev~~-~~~~~~~~~ 303 (316)
.+--.+...+.++++=|..+ |-....|+-
T Consensus 123 l~sfF~~l~~~~~lA~vWE~VRhWGSw~ERQ~ 154 (296)
T PF10361_consen 123 LQSFFWYLMQPGTLAAVWEAVRHWGSWQERQF 154 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchhhhcc
Confidence 33334445556667778888 777766554
No 65
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=71.52 E-value=69 Score=27.92 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=25.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 045142 238 IWWNFYHHSVGYAIIILSIFNIFEGFNIL 266 (316)
Q Consensus 238 ~~~~~~H~~~G~~~~~l~~~ni~lG~~~~ 266 (316)
..+|...+..-.+++++..+.+.+|+.++
T Consensus 102 ~kyN~~Qk~~y~~i~~~~~~~~~TGl~m~ 130 (204)
T TIGR01583 102 GKYNAGQKSWYWILVLGGFLMIITGIFMW 130 (204)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888999999999986
No 66
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=70.80 E-value=69 Score=27.74 Aligned_cols=93 Identities=12% Similarity=-0.087 Sum_probs=56.4
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhcccc--CC---Ccccccc
Q 045142 134 HFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNK--SH---GIQHSTH 208 (316)
Q Consensus 134 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~--~~---~~~~~~H 208 (316)
..+..| ++|.+++...+-.|.+..+..|... .....+.+|..+-++-+++++.=++.-+..... .+ .+. ..=
T Consensus 11 ~~i~lH-Wl~allv~~~~~~g~~~~~~~~~~~-~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p~~~~~~~~~~-~~a 87 (181)
T COG3038 11 VQIALH-WLMALLVIGAFALGELMGFLPRGPG-LYFLLYELHKSIGILVLALMVLRLLWRLRNPAPPIVPGPPPWQ-RKA 87 (181)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHcccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCChHH-HHH
Confidence 457888 9999999999988988887655321 122467899999888877777666654443321 11 111 111
Q ss_pred chhh-HHHHHHHHHHHHhhhcc
Q 045142 209 RTIG-ILLLVLGFIQVLALKLR 229 (316)
Q Consensus 209 ~~lG-~~~~~l~~~Q~l~~~~r 229 (316)
..+| +.+.++++.-|+.|++.
T Consensus 88 A~~~Hl~LY~l~lalPlsG~l~ 109 (181)
T COG3038 88 AKLGHLALYLLMLALPLSGYLL 109 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 33445566667777653
No 67
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=66.82 E-value=29 Score=27.04 Aligned_cols=55 Identities=16% Similarity=0.382 Sum_probs=34.4
Q ss_pred CcchhhHhhHHHHHHHHHHHHH--HHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhh
Q 045142 131 GTLHFKQVHGIINAVSWGFLMP--VGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIY 195 (316)
Q Consensus 131 ~~~~~~~~Hg~lm~~aw~~l~p--~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~ 195 (316)
++..+...=|.+-.++|-+..| +|+++.|++-...+.++.| .+++.++|+++|+.
T Consensus 34 ~~~~~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~----------tl~~lllGv~~G~~ 90 (100)
T TIGR02230 34 ATRSIWEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSW----------TLTMLIVGVVIGCL 90 (100)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHH----------HHHHHHHHHHHHHH
Confidence 3456677778888999998888 5677888765433223322 23455556666653
No 68
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=66.53 E-value=1.6e+02 Score=30.26 Aligned_cols=64 Identities=11% Similarity=-0.131 Sum_probs=42.0
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhcc
Q 045142 133 LHFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLG 197 (316)
Q Consensus 133 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~ 197 (316)
+..+..|..+..++...+.-...+...++-.-+ .+..|-++=+....+|.++..+|+++|-.-.
T Consensus 114 ~~~l~iH~p~~~lgya~~~v~f~~a~~~L~~~~-~~~~~~~~~~~~~~~g~~flt~Gi~~G~~WA 177 (576)
T TIGR00353 114 DPGLIFHPPLLYMGYVGFSVAFAFALASLLRGE-LDSACARICRPWTLAAWSFLTLGIVLGSWWA 177 (576)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457799999999988665544433333331100 1345666666677889999999999996544
No 69
>PRK10263 DNA translocase FtsK; Provisional
Probab=65.75 E-value=99 Score=34.86 Aligned_cols=36 Identities=11% Similarity=0.177 Sum_probs=16.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchh
Q 045142 137 QVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWF 172 (316)
Q Consensus 137 ~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf 172 (316)
..|..|.-+.+++|+-++++++--+=++...++.|-
T Consensus 17 ~~~rrL~E~~gIlLlllAlfL~lALiSYsPsDPSwS 52 (1355)
T PRK10263 17 SSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWS 52 (1355)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCccCCccc
Confidence 334444444455555555444332223333455554
No 70
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=65.64 E-value=8.9 Score=28.96 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhcccccC
Q 045142 288 AILEVVTRVMVIRQRRKIEN 307 (316)
Q Consensus 288 ~~lev~~~~~~~~~~~~~~~ 307 (316)
+++-|..|...+|+|||+..
T Consensus 44 Fil~VilwfvCC~kRkrsRr 63 (94)
T PF05393_consen 44 FILLVILWFVCCKKRKRSRR 63 (94)
T ss_pred HHHHHHHHHHHHHHhhhccC
Confidence 45677889999999998764
No 71
>PRK11513 cytochrome b561; Provisional
Probab=65.52 E-value=77 Score=27.07 Aligned_cols=91 Identities=8% Similarity=-0.019 Sum_probs=46.3
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccC--CCcc--ccccc
Q 045142 134 HFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKS--HGIQ--HSTHR 209 (316)
Q Consensus 134 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~--~~~~--~~~H~ 209 (316)
..+..| +++++.....+-.+.......+. .+..++.+|..+-++.+++++.=++.-+....-. ++.. ....+
T Consensus 8 ~~~~lH-Wl~a~li~~~~~~~~~~~~~~~~---~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~~~~A 83 (176)
T PRK11513 8 LQIGIH-WLVFLLVIVAYCAMEFRGFFPRS---DRPLINMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMMTGLA 83 (176)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHcccchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHH
Confidence 345677 45544444444333322211111 1234568899988887777776666555432111 1100 11122
Q ss_pred hh-hHHHHHHHHHHHHhhhc
Q 045142 210 TI-GILLLVLGFIQVLALKL 228 (316)
Q Consensus 210 ~l-G~~~~~l~~~Q~l~~~~ 228 (316)
.+ -..+.++++.+|+.|++
T Consensus 84 ~~~H~~LY~lli~~plsG~~ 103 (176)
T PRK11513 84 HLGHLVIYLLFIALPVIGLV 103 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 22 25566788889987764
No 72
>PRK03735 cytochrome b6; Provisional
Probab=61.93 E-value=42 Score=30.05 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhhhcccc--------------C-CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 183 YLLGIAGAGTGIYLGNK--------------S-HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~--------------~-~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
++..+.|+.+.+.+..+ . .|+ ..+.|.+=.-+.++++.++.+-+++.-.-+.+ | ..-++
T Consensus 53 ~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~~gsYk~p-r----e~~W~ 127 (223)
T PRK03735 53 VIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKP-R----ELNWV 127 (223)
T ss_pred HHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHcCC-C----CceeH
Confidence 44456699988865432 1 122 24789888888888899998866553211111 1 23378
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCc
Q 045142 247 VGYAIIILSIFNIFEGFNILNPLKI 271 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~~~~~~ 271 (316)
.|.+++++.+...++|..+..+..+
T Consensus 128 ~Gv~l~~l~~~~af~GY~Lpw~q~s 152 (223)
T PRK03735 128 VGVLIFFVTVGLGFTGYLLPWDQKA 152 (223)
T ss_pred HHHHHHHHHHHHHhccccCCcccch
Confidence 9999999999999999999766643
No 73
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=60.96 E-value=2e+02 Score=29.51 Aligned_cols=62 Identities=13% Similarity=0.022 Sum_probs=40.4
Q ss_pred chhhHhhHHHHHHHHH-HHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhc
Q 045142 133 LHFKQVHGIINAVSWG-FLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYL 196 (316)
Q Consensus 133 ~~~~~~Hg~lm~~aw~-~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~ 196 (316)
+.....|..+++++.. +.+|.+.-++-..+.- ....|-++=+....++.++..+|+++|-.-
T Consensus 168 ~~wl~iHpp~l~lgYa~~~v~fa~a~~~Ll~~~--~~~~~~~~~~~~~~~gw~fLT~GI~lG~~W 230 (571)
T PRK10369 168 HPGLIFHPPLLYLGYGGLMVAASVALASLLRGE--FDAACARICWRWALPGWSALTAGIILGSWW 230 (571)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999998 5556655444332211 123344444455677889999999999653
No 74
>CHL00070 petB cytochrome b6
Probab=60.28 E-value=51 Score=29.33 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 183 YLLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
++..+.|+.+.+.+..+. .|+ ..+.|.+-.-+.++++.+..+-+++...-+.+ +..-+.
T Consensus 45 ~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~gsYk~p-----re~~W~ 119 (215)
T CHL00070 45 LVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKP-----RELTWV 119 (215)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----cccCcH
Confidence 444566999988665321 122 24789888888888888888866654222111 123478
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCc
Q 045142 247 VGYAIIILSIFNIFEGFNILNPLKI 271 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~~~~~~ 271 (316)
.|.+++++.++..++|..+..+..+
T Consensus 120 ~Gv~l~~l~m~~af~GY~Lpw~q~s 144 (215)
T CHL00070 120 TGVVLAVLTVSFGVTGYSLPWDQIG 144 (215)
T ss_pred HHHHHHHHHHHHHHccccCCcchhh
Confidence 9999999999999999999866643
No 75
>PF13789 DUF4181: Domain of unknown function (DUF4181)
Probab=60.11 E-value=54 Score=25.73 Aligned_cols=31 Identities=26% Similarity=0.145 Sum_probs=25.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcccCC
Q 045142 238 IWWNFYHHSVGYAIIILSIFNIFEGFNILNP 268 (316)
Q Consensus 238 ~~~~~~H~~~G~~~~~l~~~ni~lG~~~~~~ 268 (316)
+..|..|.+.-+.+++..++.++.+..+...
T Consensus 25 ~~vn~~h~~~e~~i~i~~ii~~~~~~~~~~~ 55 (110)
T PF13789_consen 25 KHVNKLHKKGEWIIFIIFIILIFIFLFIFIF 55 (110)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 5678999999999999998888766666543
No 76
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=58.51 E-value=1.2e+02 Score=26.13 Aligned_cols=55 Identities=13% Similarity=0.019 Sum_probs=31.8
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhhcccccC------CcchhhhhHhHHHHHHHHHHHHH
Q 045142 135 FKQVHGIINAVSWGFLMPVGAITARYMKVFQSA------DPAWFYAHIICQSSAYLLGIAGA 190 (316)
Q Consensus 135 ~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~------~~~wf~~H~~~q~~~~~~~~~g~ 190 (316)
.+..| +++.+++.+++..|..+.......... ...+..+|..+..+-+++.++=+
T Consensus 7 ~R~~H-W~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~l~l~rl 67 (211)
T TIGR02125 7 VRLFH-WVRALAIFVLIVTGFYIAYPFLSPPSGEAVHFLQGYIRFVHFAAGFVLIAVLLFRV 67 (211)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHcCCCcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678 788888888888887664321110000 11345788887766555544433
No 77
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=58.47 E-value=19 Score=21.02 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc
Q 045142 241 NFYHHSVGYAIIILSIFNIFEGFN 264 (316)
Q Consensus 241 ~~~H~~~G~~~~~l~~~ni~lG~~ 264 (316)
+.+|+|++-+.-++-++-..+|+.
T Consensus 2 ~~LH~w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVFAITGLI 25 (27)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655555555555543
No 78
>PRK10209 acid-resistance membrane protein; Provisional
Probab=58.25 E-value=78 Score=27.36 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 045142 246 SVGYAIIILSIFNIFEGFNIL 266 (316)
Q Consensus 246 ~~G~~~~~l~~~ni~lG~~~~ 266 (316)
.+|...++-|+.++..++...
T Consensus 110 l~g~~~iv~Gi~~i~~a~~~~ 130 (190)
T PRK10209 110 FIAGLFCVGGIIRLMSGYKQR 130 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 455555555666665555543
No 79
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=57.69 E-value=1.6e+02 Score=27.28 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhhhccccCCCccccccch--hhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHH------HHHHHHH
Q 045142 181 SAYLLGIAGAGTGIYLGNKSHGIQHSTHRT--IGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHH------SVGYAII 252 (316)
Q Consensus 181 ~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~--lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~------~~G~~~~ 252 (316)
.+++++..|++.|+..++-+-- +++.-+. .|..++.|...-.++. .| ...|..+..+|. .-|.++.
T Consensus 28 ~tvi~A~~GIi~GL~~gS~~Ii-FDGvYSl~da~mtllsL~vsrli~~--~p---~~~RF~~GfwhlEplvL~ing~ll~ 101 (314)
T COG3965 28 GTVIFAAFGIIWGLLSGSMSII-FDGVYSLIDAGMTLLSLLVSRLIAK--DP---RDARFPYGFWHLEPLVLAINGTLLA 101 (314)
T ss_pred HHHHHHHHHHHHHHHhcceEEE-eccHHHHHHHHHHHHHHHHHHHhcc--CC---CccccCcchhhhhhhHhhhccHHHH
Confidence 4566666777777765432211 1222222 2333333322222221 22 223555555552 4466655
Q ss_pred HHHHHHHHHhhcc---cC--CCCchhhhHHHHHHHHH
Q 045142 253 ILSIFNIFEGFNI---LN--PLKIWRLVYACILVALG 284 (316)
Q Consensus 253 ~l~~~ni~lG~~~---~~--~~~~~~~~~~~~~~~~~ 284 (316)
++........+.- -+ ...+|.++|..+....+
T Consensus 102 ll~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~C 138 (314)
T COG3965 102 LLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGC 138 (314)
T ss_pred HHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHH
Confidence 5555444444332 11 22467788877664443
No 80
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=57.61 E-value=51 Score=25.02 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccCC
Q 045142 240 WNFYHHSVGYAIIILSIFNIFEGFNILNP 268 (316)
Q Consensus 240 ~~~~H~~~G~~~~~l~~~ni~lG~~~~~~ 268 (316)
-+.+-+..|+..++.|++-+..++.....
T Consensus 39 ~~~l~r~~g~~~~~~~i~~li~~l~~~~~ 67 (97)
T PF12650_consen 39 KKKLCRFMGKFMLIIGIILLIGGLLSFFQ 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36777999999999999998888854433
No 81
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=56.17 E-value=1.1e+02 Score=25.00 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=28.3
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHH
Q 045142 136 KQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIA 188 (316)
Q Consensus 136 ~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~ 188 (316)
..+...++.++..+++ .|....|-.| .+.|+.+|..++.+..+
T Consensus 5 p~l~a~~~~~s~~ll~-~g~~~Ir~~~---------~~~Hr~~Ml~a~~ls~l 47 (133)
T PF04238_consen 5 PDLNAVLNAISAVLLL-IGWYFIRRGR---------IKLHRKLMLTAFVLSAL 47 (133)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhCC---------HHHHHHHHHHHHHHHHH
Confidence 3456677777755544 6776666311 37899999887777654
No 82
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=55.67 E-value=52 Score=28.91 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=23.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 045142 238 IWWNFYHHSVGYAIIILSIFNIFEGFNIL 266 (316)
Q Consensus 238 ~~~~~~H~~~G~~~~~l~~~ni~lG~~~~ 266 (316)
..+|...+..-.+++++..+.+.+|+.++
T Consensus 105 ~kyN~~qk~~y~~~~~~~~~~~iTGl~l~ 133 (211)
T PRK10639 105 GRYNFGQKCVFWAAIIFLVLLLVSGVIIW 133 (211)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888899999875
No 83
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=55.61 E-value=57 Score=30.25 Aligned_cols=90 Identities=17% Similarity=-0.003 Sum_probs=53.7
Q ss_pred chhhhhHhHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHHH
Q 045142 170 AWFYAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVGY 249 (316)
Q Consensus 170 ~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G~ 249 (316)
.+=+.||.+-.+..++.++-++..+...+.. +.=.+.....+++..+|.+.|...-...- ..+..-..|-.++.
T Consensus 66 ~~E~~HR~~~~~~gl~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~Q~~lG~~~V~~~l-~~~~~~~~Hl~~a~ 139 (302)
T PF02628_consen 66 WIEWGHRLLAGLVGLLILALAVWAWRKRRIR-----RRLRWLALLALVLVILQGLLGAWTVLSGL-VSPYVVTLHLLLAL 139 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cchHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHH
Confidence 3457888876665555555555555432222 22236777777889999764432111110 13555788999998
Q ss_pred HHHHHHHHHHHHhhcc
Q 045142 250 AIIILSIFNIFEGFNI 265 (316)
Q Consensus 250 ~~~~l~~~ni~lG~~~ 265 (316)
+++.+.......-...
T Consensus 140 ~~~~~l~~~~~~~~~~ 155 (302)
T PF02628_consen 140 LIFALLVWLALRARRP 155 (302)
T ss_pred HHHHHHHHHHHHhcCc
Confidence 8888877776654444
No 84
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=54.92 E-value=54 Score=32.35 Aligned_cols=28 Identities=11% Similarity=-0.224 Sum_probs=11.2
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHh
Q 045142 235 KYRIWWNFYHHSVGYAIIILSIFNIFEG 262 (316)
Q Consensus 235 ~~R~~~~~~H~~~G~~~~~l~~~ni~lG 262 (316)
+.|+..-+.+.+.++.+-.++++-+...
T Consensus 389 ~~rpf~~p~g~~g~~~~~~~~~~~~~~~ 416 (474)
T TIGR03813 389 RPRPYRIPGGLAGMWFIGGLGFVGSALA 416 (474)
T ss_pred CCCCeEecCCccchhHHHHHHHHHHHHH
Confidence 3444333334433334444444444333
No 85
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=53.80 E-value=41 Score=31.25 Aligned_cols=42 Identities=26% Similarity=0.426 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccC-CCCchhhhHHHHHHHHHHHH
Q 045142 246 SVGYAIIILSIFNIFEGFNILN-PLKIWRLVYACILVALGAIA 287 (316)
Q Consensus 246 ~~G~~~~~l~~~ni~lG~~~~~-~~~~~~~~~~~~~~~~~~~~ 287 (316)
.+-.+.+.+.+++.+.|+...+ |...|..+|.+++++++++.
T Consensus 263 vvt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~ 305 (318)
T TIGR00383 263 VVSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIA 305 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHH
Confidence 3444445556666677887653 33567788887776665544
No 86
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=52.94 E-value=84 Score=26.90 Aligned_cols=18 Identities=22% Similarity=-0.068 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 045142 177 ICQSSAYLLGIAGAGTGI 194 (316)
Q Consensus 177 ~~q~~~~~~~~~g~~l~~ 194 (316)
.+.+.++++.++|++-.+
T Consensus 34 ~~~~a~i~l~ilai~q~~ 51 (182)
T PF09323_consen 34 LLYFAAILLLILAIVQLW 51 (182)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 87
>PRK15006 thiosulfate reductase cytochrome B subunit; Provisional
Probab=52.25 E-value=1.9e+02 Score=26.44 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=63.5
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHHHHHhhccccc-CCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCCCccccccchh
Q 045142 133 LHFKQVHGIINAVSWGFLMPVGAITARYMKVFQS-ADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTI 211 (316)
Q Consensus 133 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~-~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~l 211 (316)
...+.+| +++.++|.+|...|..+ +++.... ....+..+|..+..+-.+..+ +..+.....+.-+....+.+.++
T Consensus 71 ~~~Rl~H-W~~A~~fl~L~lTGl~i--~~p~~~~~~~~~~~~iH~~~G~vf~~~~l-~~~~~~~~~~~~~~~~~~~~~~~ 146 (261)
T PRK15006 71 KAVRLWH-WSNALLFVLLLLSGLIN--HFALVGATAVKSLVAVHEVCGFLLLACWL-GFVLINAVGGNGHHYRIRRQGWL 146 (261)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHH--hcCcccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcchhccCcHHHHH
Confidence 3456789 99999999999999877 2222110 122346688876643333222 22222121111011111334343
Q ss_pred hHHHHHHHHHH---HHhhhcc--cCCC-CCCccchhhHHHHHHHHHH-HHHHHHHHHhhccc
Q 045142 212 GILLLVLGFIQ---VLALKLR--PKKE-HKYRIWWNFYHHSVGYAII-ILSIFNIFEGFNIL 266 (316)
Q Consensus 212 G~~~~~l~~~Q---~l~~~~r--p~~~-~~~R~~~~~~H~~~G~~~~-~l~~~ni~lG~~~~ 266 (316)
+-+ .-| -+.+.++ +++. .+....+|+.....-..++ ++..+.+.+|+.+.
T Consensus 147 ~~~-----~~~~~~yl~g~~~g~~~p~~~~~~~k~Npgqkl~y~~v~~~~~~~livTGl~l~ 203 (261)
T PRK15006 147 ERC-----AKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQLAYLGVMYGLVPLLLLTGLLCL 203 (261)
T ss_pred HHH-----HHHHHHHHHHHhcCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 122 1233333 2211 0123457888887777653 55668889998864
No 88
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=51.93 E-value=1.8e+02 Score=26.02 Aligned_cols=131 Identities=12% Similarity=0.051 Sum_probs=63.5
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCc------chhhhhHhHHHHHHHHHHHHHHhhhhccccCCCcccc
Q 045142 133 LHFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADP------AWFYAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHS 206 (316)
Q Consensus 133 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~------~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~ 206 (316)
...+..| +++++++..++..|..+..-+....+..+ ....+|..+..+-+++.+.-++.++.-....+.....
T Consensus 16 ~~~Ri~H-W~~Al~i~~l~~tG~~i~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~Rl~w~~~g~~~aR~~~f~ 94 (235)
T PRK10171 16 APVRIWH-WLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMIFTVVLLMRIYWAFVGNRYSRELFIV 94 (235)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHhCcCCCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhhhhcC
Confidence 3456788 99999999999999876421111110011 1246798887776666666666555422111110001
Q ss_pred ccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccC
Q 045142 207 THRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNILN 267 (316)
Q Consensus 207 ~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~~ 267 (316)
+.... ...--+.+.+..++...++.+...-.|+.-...=..++++..+++.+|+.++.
T Consensus 95 ~~~~~---~~~~~~~~~~~~yl~~~~~~~~~~ghNplg~~~~~~l~~l~~~~iiTGl~l~~ 152 (235)
T PRK10171 95 PVWRK---SWWQGVWYEIRWYLFLAKRPSADIGHNPIAQAAMFGYFLMSVFMIITGFALYS 152 (235)
T ss_pred ccccH---HHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11110 00001122222222111111111223555444333466788899999987763
No 89
>COG4329 Predicted membrane protein [Function unknown]
Probab=51.36 E-value=29 Score=28.42 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=48.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhhc------ccccCC-----cchhhhhHhHHHHHHHHHHHHHHhhhhccccCCCcc
Q 045142 136 KQVHGIINAVSWGFLMPVGAITARYMK------VFQSAD-----PAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQ 204 (316)
Q Consensus 136 ~~~Hg~lm~~aw~~l~p~gil~aR~~k------~~~~~~-----~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~ 204 (316)
..+-|++..++-+-++.. |++-..+. ...+++ +.=...-..+.....++++.|+++-...+.+. .+.
T Consensus 12 ~~~aGIllGLGLggFfDg-illHQ~LqWHHmlss~~p~~s~~nl~ln~i~DGLFHa~~wv~tv~Gl~~lwr~grr~-~~~ 89 (160)
T COG4329 12 SLWAGILLGLGLGGFFDG-ILLHQLLQWHHMLSSSTPPDSLENLELNLISDGLFHAFSWVATVGGLFMLWRLGRRK-TFQ 89 (160)
T ss_pred chHHHHHHhcchhhhhhH-HHHHHHHHHHHHHhcCCCCCccccceechhhhhhHHHHHHHHHHHHHHHHHHhcCCC-cce
Confidence 356688888887777753 33322110 000000 00011123344556667777777655444332 345
Q ss_pred ccccchhhHHHHHHHHHHHHhhh
Q 045142 205 HSTHRTIGILLLVLGFIQVLALK 227 (316)
Q Consensus 205 ~~~H~~lG~~~~~l~~~Q~l~~~ 227 (316)
.+.|-+.|-.++....+|..-|.
T Consensus 90 wSa~~~~G~ll~GaGlFnl~eGt 112 (160)
T COG4329 90 WSAKYWWGGLLLGAGLFNLYEGT 112 (160)
T ss_pred eehhhhhhhhhhcccchheeehh
Confidence 67888888887777777776554
No 90
>PLN02631 ferric-chelate reductase
Probab=51.36 E-value=58 Score=34.28 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=36.3
Q ss_pred ccccchhhHHHHHHHHHHHHhhhcc---cCCCCCCccchh--hHHHHHHHHHHHHHHHHHHHhhcccC
Q 045142 205 HSTHRTIGILLLVLGFIQVLALKLR---PKKEHKYRIWWN--FYHHSVGYAIIILSIFNIFEGFNILN 267 (316)
Q Consensus 205 ~~~H~~lG~~~~~l~~~Q~l~~~~r---p~~~~~~R~~~~--~~H~~~G~~~~~l~~~ni~lG~~~~~ 267 (316)
...|+++|-+++++.++-.+..... .....+ +..|. +.-.+.|.++++++.+-++..+....
T Consensus 189 i~yHRWlGri~~~la~iH~i~y~i~~~~~~~~~~-~~~w~~~~~~~~~GviA~v~~~lm~~~Sl~~~R 255 (699)
T PLN02631 189 IKYHIWLGHVSNFLFLVHTVVFLIYWAMINKLME-TFAWNPTYVPNLAGTIAMVIGIAMWVTSLPSFR 255 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh-hhhcccccchHHHHHHHHHHHHHHHHhccHHHH
Confidence 4689999999998888887644321 111111 11111 11235688877777777776666553
No 91
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=50.95 E-value=47 Score=30.99 Aligned_cols=34 Identities=12% Similarity=0.268 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccCCCCchhh
Q 045142 241 NFYHHSVGYAIIILSIFNIFEGFNILNPLKIWRL 274 (316)
Q Consensus 241 ~~~H~~~G~~~~~l~~~ni~lG~~~~~~~~~~~~ 274 (316)
.+.|..+-.++++.-+.+++.++.++.-..-|..
T Consensus 63 ~~fr~~~a~I~yivlw~~l~Stl~l~slg~~wv~ 96 (308)
T PF14800_consen 63 RYFRLLVAVIFYIVLWANLYSTLQLFSLGSHWVG 96 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHccchhhhcccHHHH
Confidence 4778889999999999999999999866665654
No 92
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=48.98 E-value=2.5e+02 Score=26.92 Aligned_cols=54 Identities=9% Similarity=-0.044 Sum_probs=39.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhh
Q 045142 137 QVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGI 194 (316)
Q Consensus 137 ~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~ 194 (316)
.-+..+.-+||-+++-.|+..+.+.++ .+.++..|..+..++++..+.++....
T Consensus 186 ~~~w~FNP~aWQllFv~G~~~g~~~~~----~~~~~~~~~~l~~la~~~~l~~~~~~~ 239 (358)
T PF10129_consen 186 GGGWFFNPFAWQLLFVLGLWLGWGWRR----GRRFLPRRRWLVWLAVAYVLFAFFWRL 239 (358)
T ss_pred ccccccChHHHHHHHHHHHHHhccccc----cccccccchHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999887554 234567788888877766665555543
No 93
>PRK03735 cytochrome b6; Provisional
Probab=48.88 E-value=99 Score=27.66 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=52.8
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhhccccc----------C--Ccch--hhhhHhHHHHHHHHHHHHHHhhhhccccC
Q 045142 135 FKQVHGIINAVSWGFLMPVGAITARYMKVFQS----------A--DPAW--FYAHIICQSSAYLLGIAGAGTGIYLGNKS 200 (316)
Q Consensus 135 ~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~----------~--~~~w--f~~H~~~q~~~~~~~~~g~~l~~~~~~~~ 200 (316)
....=|.+..+++.+.+-.|++++-|+.+... . .--| -.+|..--.+-++++.+=+.=++..+...
T Consensus 40 ~~~~~G~l~~~~~~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~~gsYk 119 (223)
T PRK03735 40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYK 119 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 44555999999999999999999887665211 0 0012 23343221111111111111112222111
Q ss_pred CCccccccchhhHHHHHHHHHHHHhhhcccCC
Q 045142 201 HGIQHSTHRTIGILLLVLGFIQVLALKLRPKK 232 (316)
Q Consensus 201 ~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~ 232 (316)
+. ...-=+.|++++++.....+.|++-|.-
T Consensus 120 ~p--re~~W~~Gv~l~~l~~~~af~GY~Lpw~ 149 (223)
T PRK03735 120 KP--RELNWVVGVLIFFVTVGLGFTGYLLPWD 149 (223)
T ss_pred CC--CCceeHHHHHHHHHHHHHHhccccCCcc
Confidence 11 1233489999999999999988877654
No 94
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=47.88 E-value=67 Score=28.04 Aligned_cols=46 Identities=9% Similarity=-0.051 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhH--HHHHHHHHHHHHHh
Q 045142 140 GIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIIC--QSSAYLLGIAGAGT 192 (316)
Q Consensus 140 g~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~--q~~~~~~~~~g~~l 192 (316)
.+|++++=.+++-.++-+.|+ +...-++|++- ..+|+.+.++|.++
T Consensus 10 ~vLLliG~~f~ligaIGLlRf-------PD~YtRLHAATKa~TLGv~LILlgv~l 57 (197)
T PRK12585 10 SIMILIGGLLSILAAIGVIRL-------PDVYTRTHAAGISNTFGVSLLLFATVG 57 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-------CcHHHHhhccccchhhhHHHHHHHHHH
Confidence 355666655555455556665 23456899776 55666666666555
No 95
>CHL00070 petB cytochrome b6
Probab=47.09 E-value=1.5e+02 Score=26.41 Aligned_cols=97 Identities=15% Similarity=0.067 Sum_probs=54.6
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccC------------Ccch--hhhhHhHHHHHHHHHHHHHHhhhhcccc
Q 045142 134 HFKQVHGIINAVSWGFLMPVGAITARYMKVFQSA------------DPAW--FYAHIICQSSAYLLGIAGAGTGIYLGNK 199 (316)
Q Consensus 134 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~------------~~~w--f~~H~~~q~~~~~~~~~g~~l~~~~~~~ 199 (316)
.....=|.+..+++.+.+-.|++++-|+.+.... .--| -.+|..--.+-++++.+=+.=++..+..
T Consensus 31 ~~~~~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~gsY 110 (215)
T CHL00070 31 NIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGF 110 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445568999999999999999999877653110 0012 2344332221122222211222222222
Q ss_pred CCCccccccchhhHHHHHHHHHHHHhhhcccCC
Q 045142 200 SHGIQHSTHRTIGILLLVLGFIQVLALKLRPKK 232 (316)
Q Consensus 200 ~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~ 232 (316)
.+. ...-=+.|++++++.....+.|++-|.-
T Consensus 111 k~p--re~~W~~Gv~l~~l~m~~af~GY~Lpw~ 141 (215)
T CHL00070 111 KKP--RELTWVTGVVLAVLTVSFGVTGYSLPWD 141 (215)
T ss_pred cCC--cccCcHHHHHHHHHHHHHHHccccCCcc
Confidence 111 1233489999999999999999877644
No 96
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=46.61 E-value=3.6e+02 Score=28.10 Aligned_cols=62 Identities=11% Similarity=-0.051 Sum_probs=41.3
Q ss_pred chhhHhhHHHHHHHHH-HHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhc
Q 045142 133 LHFKQVHGIINAVSWG-FLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYL 196 (316)
Q Consensus 133 ~~~~~~Hg~lm~~aw~-~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~ 196 (316)
+..+..|..+.+++.. +.+|.+.-++-..+.- .+..|-++=+....++.++..+|+++|-.-
T Consensus 166 ~~~l~iHpp~l~lgya~~~v~f~~a~~~L~~~~--~~~~~~~~~~~~~~~g~~~LT~GI~~G~~W 228 (628)
T TIGR03145 166 DIGLIFHPPLLYLGYVGFAVNFAMALAALISGH--LDAAVARWSRPWVLLSWVFLTGGIMLGSWW 228 (628)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999996 4455554333332211 123466666677788999999999999643
No 97
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=46.61 E-value=83 Score=31.54 Aligned_cols=10 Identities=20% Similarity=-0.034 Sum_probs=3.7
Q ss_pred ccCCCCCCcc
Q 045142 229 RPKKEHKYRI 238 (316)
Q Consensus 229 rp~~~~~~R~ 238 (316)
|.+++...|+
T Consensus 386 r~k~p~~~rp 395 (507)
T TIGR00910 386 ILKHPDLKRT 395 (507)
T ss_pred HHhcCCCCCC
Confidence 4333333343
No 98
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=46.60 E-value=22 Score=27.68 Aligned_cols=28 Identities=7% Similarity=-0.037 Sum_probs=18.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045142 271 IWRLVYACILVALGAIAAILEVVTRVMV 298 (316)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~lev~~~~~~ 298 (316)
.+.+..+.++..+++..+.+|...+.+.
T Consensus 51 N~GIli~f~i~f~~~~~~~~e~~~~~~~ 78 (103)
T PF06422_consen 51 NFGILIAFWIFFIVLTLLATEFIKFEKS 78 (103)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3455566666666677778888876544
No 99
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=46.34 E-value=27 Score=24.28 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Q 045142 242 FYHHSVGYAIIILSIFNIFEGFN 264 (316)
Q Consensus 242 ~~H~~~G~~~~~l~~~ni~lG~~ 264 (316)
..-..+|...++-|+.++...+.
T Consensus 23 ~~~~i~g~~~i~~Gi~~l~~~~~ 45 (72)
T PF03729_consen 23 ALAIILGIWLIISGIFQLISAFR 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555554
No 100
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=46.18 E-value=85 Score=21.80 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc---ccc-CCcchhhhhHhHHHHHHHH
Q 045142 141 IINAVSWGFLMPVGAITARYMKV---FQS-ADPAWFYAHIICQSSAYLL 185 (316)
Q Consensus 141 ~lm~~aw~~l~p~gil~aR~~k~---~~~-~~~~wf~~H~~~q~~~~~~ 185 (316)
.++++++.+++-.|+++.+...+ +.. .++.|..+|...-...+++
T Consensus 7 ~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l 55 (64)
T PF14358_consen 7 LLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLIL 55 (64)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777665432 111 1346667776655444333
No 101
>PF13994 PgaD: PgaD-like protein
Probab=45.93 E-value=61 Score=26.54 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 045142 275 VYACILVALGAIAAILEVVTRVMVIRQRRKIE 306 (316)
Q Consensus 275 ~~~~~~~~~~~~~~~lev~~~~~~~~~~~~~~ 306 (316)
.|..++++.+++.++--.+-+.+++++++|..
T Consensus 66 ~y~~i~~~~a~~Li~Wa~yn~~Rf~~~~rr~~ 97 (138)
T PF13994_consen 66 IYLLIALVNAVILILWAKYNRLRFRGRRRRRR 97 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhccC
Confidence 55555555555555555555556666666554
No 102
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=45.69 E-value=1.1e+02 Score=26.74 Aligned_cols=84 Identities=11% Similarity=0.151 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHH
Q 045142 182 AYLLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHH 245 (316)
Q Consensus 182 ~~~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~ 245 (316)
-++..+.|+.+++.+..+. .|+ ..+.|.+-.-..++++.+..+-+++... +|+. +..-|
T Consensus 33 ~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~gs----Y~~p-re~~W 107 (200)
T cd00284 33 LVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGS----YKKP-RELTW 107 (200)
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcch-hHHHH
Confidence 3445567999998765331 122 2467887777777788888776654321 1111 13458
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCC
Q 045142 246 SVGYAIIILSIFNIFEGFNILNPLK 270 (316)
Q Consensus 246 ~~G~~~~~l~~~ni~lG~~~~~~~~ 270 (316)
+.|.+++++.++..++|..+..+..
T Consensus 108 ~~G~~l~~l~~~~af~GY~Lpw~q~ 132 (200)
T cd00284 108 VIGVILLLLTMATAFMGYVLPWGQM 132 (200)
T ss_pred HHHHHHHHHHHHHHHcccccCchhh
Confidence 9999999999999999999876654
No 103
>PRK11281 hypothetical protein; Provisional
Probab=45.58 E-value=1.8e+02 Score=32.39 Aligned_cols=14 Identities=14% Similarity=0.506 Sum_probs=7.9
Q ss_pred ccchhhHHHHHHHH
Q 045142 207 THRTIGILLLVLGF 220 (316)
Q Consensus 207 ~H~~lG~~~~~l~~ 220 (316)
..-.+|-+++++.+
T Consensus 648 ~~d~lg~~~~i~~~ 661 (1113)
T PRK11281 648 ADDVIGQAVIIIAL 661 (1113)
T ss_pred hhhhHHHHHHHHHH
Confidence 33467766666533
No 104
>MTH00086 CYTB cytochrome b; Provisional
Probab=45.07 E-value=1.1e+02 Score=29.47 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=53.0
Q ss_pred HHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHH
Q 045142 185 LGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVG 248 (316)
Q Consensus 185 ~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G 248 (316)
-.+.|+.+++.+..+. .|+ ....|..=.-..++++.+...-++.... +|+.. =+..|
T Consensus 33 QiiTGi~L~~~Y~p~~~~Af~Sv~~I~~~v~~GwliR~~H~~gas~~f~~~ylHi~R~~~ygs----y~~~~---~W~~G 105 (355)
T MTH00086 33 QILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMS----YRLKK---VWISG 105 (355)
T ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHhCcccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHcc----cCCch---HHHHh
Confidence 3566999888764321 122 2467877777777777777775554321 11111 38899
Q ss_pred HHHHHHHHHHHHHhhcccCCCC
Q 045142 249 YAIIILSIFNIFEGFNILNPLK 270 (316)
Q Consensus 249 ~~~~~l~~~ni~lG~~~~~~~~ 270 (316)
.+++++.+++.++|..+.....
T Consensus 106 v~l~~l~m~~af~GYvLpw~qm 127 (355)
T MTH00086 106 LTIYLLVMMEAFMGYVLVWAQM 127 (355)
T ss_pred HHHHHHHHHHHHhhhhcccCch
Confidence 9999999999999999976554
No 105
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=45.05 E-value=91 Score=24.94 Aligned_cols=47 Identities=9% Similarity=0.135 Sum_probs=21.7
Q ss_pred hhhHhHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHH
Q 045142 173 YAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQ 222 (316)
Q Consensus 173 ~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q 222 (316)
.+|.+++.+..++.+++++.++...... ....|-.++..+++..+.-
T Consensus 29 iinliiG~vT~l~VLvtii~afvf~~~~---p~p~~iffavcI~l~~~s~ 75 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAFVFPQDP---PKPLHIFFAVCILLICISA 75 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheEEecCCC---CCceEEehHHHHHHHHHHH
Confidence 4555555555555555555555443222 1233444444444443333
No 106
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=44.84 E-value=4.4e+02 Score=29.16 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHH
Q 045142 177 ICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQ 222 (316)
Q Consensus 177 ~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q 222 (316)
.+-.+++.++++|.++++...+. ..+.-..+|+++++-.++.
T Consensus 906 lii~~~iPl~~~g~~~~l~~~g~----~l~~~s~~G~i~l~GivV~ 947 (1051)
T TIGR00914 906 LLVFTGIPFALTGGVFALWLRGI----PLSISAAVGFIALSGVAVL 947 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC----CccHHHHHHHHHHHHHHHh
Confidence 33445667777777777655432 2356678888887655444
No 107
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=44.44 E-value=1.1e+02 Score=21.65 Aligned_cols=24 Identities=13% Similarity=0.358 Sum_probs=12.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHH
Q 045142 237 RIWWNFYHHSVGYAIIILSIFNIF 260 (316)
Q Consensus 237 R~~~~~~H~~~G~~~~~l~~~ni~ 260 (316)
|....|+.-.+..+...+++.+.+
T Consensus 8 RT~LaW~Rt~l~l~~~g~~l~~~~ 31 (73)
T PF02656_consen 8 RTFLAWIRTALALVGVGLALLRFF 31 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555555544444
No 108
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=44.32 E-value=47 Score=21.80 Aligned_cols=24 Identities=4% Similarity=0.076 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 045142 275 VYACILVALGAIAAILEVVTRVMV 298 (316)
Q Consensus 275 ~~~~~~~~~~~~~~~lev~~~~~~ 298 (316)
.|.+++.+-...++-|.++.-.+.
T Consensus 8 iFsvvIil~If~~iGl~IyQkikq 31 (49)
T PF11044_consen 8 IFSVVIILGIFAWIGLSIYQKIKQ 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343333333333444555553333
No 109
>COG2717 Predicted membrane protein [Function unknown]
Probab=44.28 E-value=44 Score=29.63 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=33.1
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhH
Q 045142 134 HFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIIC 178 (316)
Q Consensus 134 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~ 178 (316)
.....-..+-++||.+++|.++-.-+..+.-- +..|.++|+..
T Consensus 111 ~~~rpyitiG~iaflll~pLalTS~k~~~rrl--G~rW~~LHrLv 153 (209)
T COG2717 111 LLKRPYITIGMIAFLLLIPLALTSFKWVRRRL--GKRWKKLHRLV 153 (209)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHH
Confidence 34455567889999999999998888766432 47899999874
No 110
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=43.57 E-value=30 Score=27.66 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 045142 138 VHGIINAVSWGFLMPVGAITARY 160 (316)
Q Consensus 138 ~Hg~lm~~aw~~l~p~gil~aR~ 160 (316)
+-..+|+++|+++-|+|..+.-|
T Consensus 10 a~Ia~mVlGFi~fWPlGla~Lay 32 (115)
T PF11014_consen 10 AWIAAMVLGFIVFWPLGLALLAY 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999877655
No 111
>PHA02898 virion envelope protein; Provisional
Probab=43.55 E-value=1.4e+02 Score=22.60 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCC--CchhhhHHHHHHHHHHHHHHHHHHH---HHHHHhhcc
Q 045142 245 HSVGYAIIILSIFNIFEGFNILNPL--KIWRLVYACILVALGAIAAILEVVT---RVMVIRQRR 303 (316)
Q Consensus 245 ~~~G~~~~~l~~~ni~lG~~~~~~~--~~~~~~~~~~~~~~~~~~~~lev~~---~~~~~~~~~ 303 (316)
...|.++++++.+=.+.=+.....+ ..|...-+ +++++++.+++.++- |.++|+..+
T Consensus 15 li~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSi--i~FIlgivl~lG~~ifs~y~r~C~~~~ 76 (92)
T PHA02898 15 VAFGIILLIVACICAYIELSKSEKPADSALRSISI--ISFILAIILILGIIFFKGYNMFCGGNT 76 (92)
T ss_pred HHHHHHHHHHHHHHheehhhcCCCcchhHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 3566666666655555444444322 34655222 223333334444443 666666444
No 112
>PRK12405 electron transport complex RsxE subunit; Provisional
Probab=43.52 E-value=2.5e+02 Score=25.32 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHH
Q 045142 139 HGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLL 216 (316)
Q Consensus 139 Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~ 216 (316)
.++-|.+|..+.+-....+....|++- +.+ +++..+++.++.++..+.+.- +.+....|+.+|+.+=
T Consensus 37 nalgmGlA~~~Vl~~S~~~~sllr~~i---~~~------lRi~v~IlvIA~~V~~v~~~L--~a~~p~l~~~LGiflp 103 (231)
T PRK12405 37 NALGLGLATTLVLVCSNLTVSLLRKWI---PKE------IRIPIFVMIIASFVTVVQLLM--NAYAYGLYQSLGIFIP 103 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---hHH------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhh
Confidence 467788888776666665555555432 112 445555555544444332211 1122356667776554
No 113
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=43.37 E-value=1.9e+02 Score=25.30 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=53.2
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhhcccccC---------Cc---ch--hhhhHhHHHHHHHHHHHHHHhhhhccccC
Q 045142 135 FKQVHGIINAVSWGFLMPVGAITARYMKVFQSA---------DP---AW--FYAHIICQSSAYLLGIAGAGTGIYLGNKS 200 (316)
Q Consensus 135 ~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~---------~~---~w--f~~H~~~q~~~~~~~~~g~~l~~~~~~~~ 200 (316)
....=|.+..+++.+..-.|++++-|+.+-... .+ -| ..+|...-..-+++..+=+.=++..+...
T Consensus 21 ~~~~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~gsY~ 100 (200)
T cd00284 21 YWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYK 100 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345558999999999999999999887653210 00 12 33443321111111111111112222111
Q ss_pred CCccccccchhhHHHHHHHHHHHHhhhcccCC
Q 045142 201 HGIQHSTHRTIGILLLVLGFIQVLALKLRPKK 232 (316)
Q Consensus 201 ~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~ 232 (316)
+ ....-=++|++++++.....+.|+.-|.-
T Consensus 101 ~--pre~~W~~G~~l~~l~~~~af~GY~Lpw~ 130 (200)
T cd00284 101 K--PRELTWVIGVILLLLTMATAFMGYVLPWG 130 (200)
T ss_pred c--hhHHHHHHHHHHHHHHHHHHHcccccCch
Confidence 1 12233488999999999999888876643
No 114
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=43.16 E-value=45 Score=26.97 Aligned_cols=37 Identities=8% Similarity=0.019 Sum_probs=17.9
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 267 NPLKIWRLVYACILVALGAIAAILEVVTRVMVIRQRR 303 (316)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~lev~~~~~~~~~~~ 303 (316)
+++..|.....++.++++++.++|=...-..-|+||+
T Consensus 30 ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~ 66 (125)
T PF15048_consen 30 EDATPWNYSILALSFVVLVISFFLLGRSIQANRNRKM 66 (125)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHhHhcccccc
Confidence 3445687766555555545444443333333333333
No 115
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=42.26 E-value=1.3e+02 Score=31.92 Aligned_cols=129 Identities=9% Similarity=0.034 Sum_probs=61.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhccccc----CCcch--hhhhHhHHHHHHHHHHHHHHhhhhccccC----CCc---
Q 045142 137 QVHGIINAVSWGFLMPVGAITARYMKVFQS----ADPAW--FYAHIICQSSAYLLGIAGAGTGIYLGNKS----HGI--- 203 (316)
Q Consensus 137 ~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~----~~~~w--f~~H~~~q~~~~~~~~~g~~l~~~~~~~~----~~~--- 203 (316)
-.=+++|+++..+-. ....+.+-++.... +...| ++.+..-...-+..++..+.+-...++.. -+.
T Consensus 111 e~~~~~~f~~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~R~G~la~~~Lpll~llv~Rnn~l~~ltGis~e 189 (722)
T PLN02844 111 EILAVLLFFLFLAWT-FYARISNDFKKLMPVKSLNLNLWQLKYLRVATRFGLLAEACLALLLLPVLRGLALFRLLGIQFE 189 (722)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhhhhhhCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhCCCHH
Confidence 344667777655533 33333333332211 12234 34444444422333334444433333321 121
Q ss_pred -cccccchhhHHHHHHHHHHHHhhhc----ccCCCCCCccch--hhHHHHHHHHHHHHHHHHHHHhhcccC
Q 045142 204 -QHSTHRTIGILLLVLGFIQVLALKL----RPKKEHKYRIWW--NFYHHSVGYAIIILSIFNIFEGFNILN 267 (316)
Q Consensus 204 -~~~~H~~lG~~~~~l~~~Q~l~~~~----rp~~~~~~R~~~--~~~H~~~G~~~~~l~~~ni~lG~~~~~ 267 (316)
....|+++|-+++++.++-.+..+. ........ ..| .....+.|.++++++.+-.+.-+....
T Consensus 190 ~~i~fHrWlGr~~~llallH~i~~~i~w~~~~~~~~~~-~~w~~~~~~~~~G~IAlv~l~iL~itSl~~iR 259 (722)
T PLN02844 190 ASVRYHVWLGTSMIFFATVHGASTLFIWGISHHIQDEI-WKWQKTGRIYLAGEIALVTGLVIWITSLPQIR 259 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhh-hhhccCcchhhhHHHHHHHHHHHHHHhhHHHH
Confidence 2479999999999999888764332 11111000 011 111235677777777666665555443
No 116
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=41.49 E-value=66 Score=23.30 Aligned_cols=22 Identities=5% Similarity=0.267 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 045142 275 VYACILVALGAIAAILEVVTRV 296 (316)
Q Consensus 275 ~~~~~~~~~~~~~~~lev~~~~ 296 (316)
++++++.++.++++++.++.+.
T Consensus 11 Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 11 GMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666677777766
No 117
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=41.35 E-value=1.4e+02 Score=26.94 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCC-------------CchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 243 YHHSVGYAIIILSIFNIFEGFNILNPL-------------KIWRLVYACILVALGAIAAILEVVTRVMVIRQRR 303 (316)
Q Consensus 243 ~H~~~G~~~~~l~~~ni~lG~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~lev~~~~~~~~~~~ 303 (316)
++...+...++.+......|+...+++ ..... +......+.++.+++-+..+...++|++
T Consensus 104 y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~C~pp~a~~~~~~~~-~~~~~~~inv~tvivY~i~~~~~~~k~~ 176 (257)
T PF10320_consen 104 YLIILLIFPVIYSIFFTVIGFLYRDDETIVICNPPLAFHGTASQI-WSYSNIIINVITVIVYIITIIIFKRKSR 176 (257)
T ss_pred chhhHhHHHHHHHHHHHhheeEecCCcccccCCCccccCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 666667777777777778887765442 11122 2222223334445666677777666655
No 118
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=40.52 E-value=43 Score=23.95 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=7.4
Q ss_pred HHHHHHHHhhccc
Q 045142 254 LSIFNIFEGFNIL 266 (316)
Q Consensus 254 l~~~ni~lG~~~~ 266 (316)
.+....|.|+.+.
T Consensus 22 ~~~a~~f~GLsln 34 (66)
T PF10746_consen 22 DVVARYFWGLSLN 34 (66)
T ss_pred HHHHHHHcCCCHH
Confidence 3444556677665
No 119
>COG4244 Predicted membrane protein [Function unknown]
Probab=40.38 E-value=2.3e+02 Score=24.03 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=56.1
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhhhh--ccccCCC---ccccccchhhHHHHHHHH-HHHHhhhcccCCCCCCccchh
Q 045142 168 DPAWFYAHIICQSSAYLLGIAGAGTGIY--LGNKSHG---IQHSTHRTIGILLLVLGF-IQVLALKLRPKKEHKYRIWWN 241 (316)
Q Consensus 168 ~~~wf~~H~~~q~~~~~~~~~g~~l~~~--~~~~~~~---~~~~~H~~lG~~~~~l~~-~Q~l~~~~rp~~~~~~R~~~~ 241 (316)
+..|+..=+.....+.+.+....+.++. ...+..+ ..-..|..+|.++.+++. +...-.+.|-.. +....
T Consensus 44 ~~~~~~vs~wn~~~a~i~~~~A~~~g~~e~lla~~~~~a~~~a~wh~~lG~il~~~la~~~~~r~~~~~~~----~~~v~ 119 (160)
T COG4244 44 KDRWFDVSWWNLFAALIAGFFAVIAGLFEFLLARPGGAAKQAAEWHHVLGNILLIVLAILTAWRYVHRNDA----VAAVS 119 (160)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----hhhcc
Confidence 4568888888888887777777766653 1111111 123688888888776433 223232222211 12223
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccc
Q 045142 242 FYHHSVGYAIIILSIFNIFEGFNIL 266 (316)
Q Consensus 242 ~~H~~~G~~~~~l~~~ni~lG~~~~ 266 (316)
+.=-+++.++.+|-.++..+|-.+.
T Consensus 120 ~~~L~lsl~~~~Lv~l~g~lG~~l~ 144 (160)
T COG4244 120 PAGLLLSLATVLLVALQGYLGAQLV 144 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4445788888888888888877654
No 120
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=40.20 E-value=3.8e+02 Score=26.51 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=35.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH------------hhccc--C-------------CCCchh-hhHHHHHHHHHHHHHHH
Q 045142 239 WWNFYHHSVGYAIIILSIFNIFE------------GFNIL--N-------------PLKIWR-LVYACILVALGAIAAIL 290 (316)
Q Consensus 239 ~~~~~H~~~G~~~~~l~~~ni~l------------G~~~~--~-------------~~~~~~-~~~~~~~~~~~~~~~~l 290 (316)
.-++.|..+|..+-+-+....+. |..+. + +|.-|. ..-....+.++...+++
T Consensus 115 l~~~~H~~~~~~vaig~~~Sa~~I~~~nswM~tP~G~~~~~~~g~~~~~~~~~~~~NP~~~~~~~H~~~aa~~~g~f~v~ 194 (436)
T PF01654_consen 115 LSPKVHLFIGWLVAIGAWLSAFWILAANSWMQTPVGFELNPVNGRAELTDFWAAFFNPSFWPRFLHMLLAAYLTGGFVVA 194 (436)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCCeeEEEcCCCeEEeccHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999988877666654432 33331 0 111122 23345555666667778
Q ss_pred HHHHHHHHHhh
Q 045142 291 EVVTRVMVIRQ 301 (316)
Q Consensus 291 ev~~~~~~~~~ 301 (316)
-+..|..+++|
T Consensus 195 ~v~A~~llr~~ 205 (436)
T PF01654_consen 195 GVSAYYLLRGR 205 (436)
T ss_pred HHHHHHHHhcc
Confidence 88888766544
No 121
>PRK03557 zinc transporter ZitB; Provisional
Probab=40.19 E-value=2.1e+02 Score=26.75 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhhhccccCCCccccccchhhHHHHHH
Q 045142 183 YLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVL 218 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l 218 (316)
.+++++.++.|+...+.. -.....|...-++..++
T Consensus 29 ~~l~i~k~~~g~~tgS~A-llaDa~hsl~D~~~~~~ 63 (312)
T PRK03557 29 AGFMLVEVIGGFLSGSLA-LLADAGHMLTDAAALLF 63 (312)
T ss_pred HHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHH
Confidence 334444555554433211 01234565555555443
No 122
>COG3658 Cytochrome b [Energy production and conversion]
Probab=40.09 E-value=2.4e+02 Score=24.16 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=19.0
Q ss_pred cccchhhHHHHHHHHHHHHhhh
Q 045142 206 STHRTIGILLLVLGFIQVLALK 227 (316)
Q Consensus 206 ~~H~~lG~~~~~l~~~Q~l~~~ 227 (316)
.+|.++|++++.++.+-..-|.
T Consensus 35 ~~H~wvGyav~allalRL~WG~ 56 (192)
T COG3658 35 QLHTWVGYAVLALLALRLCWGI 56 (192)
T ss_pred ChhHHHHHHHHHHHHHHHHhcc
Confidence 6999999999999999877554
No 123
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=39.84 E-value=38 Score=31.76 Aligned_cols=18 Identities=6% Similarity=0.072 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhhcccc
Q 045142 288 AILEVVTRVMVIRQRRKI 305 (316)
Q Consensus 288 ~~lev~~~~~~~~~~~~~ 305 (316)
+++=++.=.++|||||+.
T Consensus 271 IMvIIYLILRYRRKKKmk 288 (299)
T PF02009_consen 271 IMVIIYLILRYRRKKKMK 288 (299)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333334433344444433
No 124
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=39.83 E-value=87 Score=21.57 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHHHHHHHHHHH
Q 045142 182 AYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVGYAIIILSIF 257 (316)
Q Consensus 182 ~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ 257 (316)
+++..+.|+.+...-. . .....-..+|+..++-.+.|.+..+.+ ++. ...++.+...|...+++|+.
T Consensus 3 Gil~iv~Gi~~l~~p~-~---~~~~~~~i~g~~~i~~Gi~~l~~~~~~-~~~----~~~~~~~l~~gi~~i~~Gi~ 69 (72)
T PF03729_consen 3 GILFIVLGILLLFNPD-A---SLAALAIILGIWLIISGIFQLISAFRR-RKG----SKGWWWSLLSGILSIVLGII 69 (72)
T ss_pred HHHHHHHHHHHHHhHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHhc-ccc----chhhHHHHHHHHHHHHHHHH
Confidence 4555555666543211 0 012334567777777777777655542 211 22456777777777777764
No 125
>MTH00131 CYTB cytochrome b; Provisional
Probab=39.79 E-value=1.3e+02 Score=29.10 Aligned_cols=80 Identities=9% Similarity=0.057 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHH
Q 045142 184 LLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSV 247 (316)
Q Consensus 184 ~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~ 247 (316)
+-.+.|+.+++.+..+. .|+ ..+.|.+=.-..++++.+..+-+++...-+ |+ . =++.
T Consensus 43 ~qiitG~~L~~~Y~p~~~~a~~Sv~~i~~ev~~G~~iR~~H~~gas~~~~~~~lH~~r~~~~gsy~---~~-~---~W~~ 115 (380)
T MTH00131 43 TQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYL---YK-E---TWNI 115 (380)
T ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---Cc-h---HHHH
Confidence 33667999988765321 122 246788766667777777777555432111 11 1 3789
Q ss_pred HHHHHHHHHHHHHHhhcccCCCC
Q 045142 248 GYAIIILSIFNIFEGFNILNPLK 270 (316)
Q Consensus 248 G~~~~~l~~~ni~lG~~~~~~~~ 270 (316)
|.+++++.+...++|..+..+..
T Consensus 116 G~~l~~l~~~~~f~Gy~Lpw~q~ 138 (380)
T MTH00131 116 GVVLLLLVMMTAFVGYVLPWGQM 138 (380)
T ss_pred hHHHHHHHHHHHHHhccCccccc
Confidence 99999999999999999976654
No 126
>MTH00145 CYTB cytochrome b; Provisional
Probab=39.49 E-value=1.6e+02 Score=28.57 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 183 YLLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
++-.+.|+.+++.+..+. .|+ ....|.+=.-..++++.+..+-++.... +|+. .=|.
T Consensus 43 ~~qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~gs----y~~~---~~W~ 115 (379)
T MTH00145 43 GIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGS----YLMQ---HTWN 115 (379)
T ss_pred HHHHHHHHHHHHHHcCCCchhHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----ccCc---hHHH
Confidence 334566999988764321 122 2367777555666666777765554321 1111 2388
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCc
Q 045142 247 VGYAIIILSIFNIFEGFNILNPLKI 271 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~~~~~~ 271 (316)
.|.+++++.+++.++|..+.....+
T Consensus 116 ~Gv~l~~l~~~~af~GYvLpw~q~s 140 (379)
T MTH00145 116 IGVTLLLLSMGTAFLGYVLPWGQMS 140 (379)
T ss_pred HhHHHHHHHHHHHHHhhccCccccc
Confidence 9999999999999999999766543
No 127
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=38.88 E-value=2.6e+02 Score=24.27 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhcccCCC
Q 045142 251 IIILSIFNIFEGFNILNPL 269 (316)
Q Consensus 251 ~~~l~~~ni~lG~~~~~~~ 269 (316)
..+.|++.+..|+.+...|
T Consensus 134 ~ii~Gvl~ii~g~ill~~P 152 (185)
T COG3247 134 MIISGVLGIIAGLILLFNP 152 (185)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 3456777777777766544
No 128
>PRK15049 L-asparagine permease; Provisional
Probab=38.84 E-value=1.6e+02 Score=29.33 Aligned_cols=18 Identities=0% Similarity=-0.164 Sum_probs=8.2
Q ss_pred cchhhHHHHHHHHHHHHH
Q 045142 238 IWWNFYHHSVGYAIIILS 255 (316)
Q Consensus 238 ~~~~~~H~~~G~~~~~l~ 255 (316)
++..+...+..++.++..
T Consensus 416 pf~~~~~p~~~~~~l~~~ 433 (499)
T PRK15049 416 SFKLPGAPFTSWLTLLFL 433 (499)
T ss_pred CCcccCccHHHHHHHHHH
Confidence 333344455555444444
No 129
>MTH00034 CYTB cytochrome b; Validated
Probab=38.36 E-value=1.7e+02 Score=28.35 Aligned_cols=81 Identities=11% Similarity=0.079 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 183 YLLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
++-.+.|+.+++.+..+. .|+ ..+.|.+=.-..++++.+..+-+++...- |+.. =++
T Consensus 42 ~~qiiTG~~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~gsy----~~~~---~W~ 114 (379)
T MTH00034 42 IIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSY----VNIE---TWN 114 (379)
T ss_pred HHHHHHHHHHHHHHcCCccchHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----CCch---HHH
Confidence 334667999988765321 112 24678866666666777777755543221 1111 278
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCC
Q 045142 247 VGYAIIILSIFNIFEGFNILNPLK 270 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~~~~~ 270 (316)
.|.+++++.++..++|..+..+..
T Consensus 115 ~G~~l~~l~~~~af~Gy~Lpw~q~ 138 (379)
T MTH00034 115 IGVILFLLTMLTAFVGYVLPWGQM 138 (379)
T ss_pred HhHHHHHHHHHHHHhhcCcchhhh
Confidence 999999999999999999976554
No 130
>MTH00046 CYTB cytochrome b; Validated
Probab=38.30 E-value=1.4e+02 Score=28.65 Aligned_cols=81 Identities=15% Similarity=0.090 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHH
Q 045142 184 LLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSV 247 (316)
Q Consensus 184 ~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~ 247 (316)
+-.+.|+.+++.+..+. .|+ ....|..=.-..++++.++..-++....-+ |+ .=|+.
T Consensus 34 iQiiTGi~La~~Y~p~~~~Af~Sv~~I~~~v~~GwliR~~H~~gAs~~f~~~ylHi~R~~~~gsY~---~~----~~W~~ 106 (355)
T MTH00046 34 IQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYS---KK----GVWNV 106 (355)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---Cc----hhHHH
Confidence 34566899888665321 122 246888877777788888887665432111 11 13789
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCc
Q 045142 248 GYAIIILSIFNIFEGFNILNPLKI 271 (316)
Q Consensus 248 G~~~~~l~~~ni~lG~~~~~~~~~ 271 (316)
|.+++++.+++.++|..+...+.+
T Consensus 107 Gv~l~~l~m~~aF~GYvLpwgqms 130 (355)
T MTH00046 107 GFILYLLVMVEAFLGYILPWHQMS 130 (355)
T ss_pred hHHHHHHHHHHHHeeeecCccchh
Confidence 999999999999999999766543
No 131
>MTH00016 CYTB cytochrome b; Validated
Probab=38.21 E-value=1.8e+02 Score=28.23 Aligned_cols=81 Identities=9% Similarity=0.069 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 183 YLLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
++..+.|+.+.+.+..+. .|+ ..+.|..=.-..++++.+..+-+++...-+ |+ --+.
T Consensus 43 ~~qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gsy~---~~----~~W~ 115 (378)
T MTH00016 43 VIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYF---LM----ETWN 115 (378)
T ss_pred HHHHHHHHHHHhhhcCCcchhHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cc----hHHH
Confidence 334567999988765321 122 246787666666667777777555432211 11 1478
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCC
Q 045142 247 VGYAIIILSIFNIFEGFNILNPLK 270 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~~~~~ 270 (316)
.|.+++++.+++.++|..+.....
T Consensus 116 ~Gv~l~~l~m~~af~GYvLpw~q~ 139 (378)
T MTH00016 116 IGVILLLLTMATAFLGYVLPWGQM 139 (378)
T ss_pred hhHHHHHHHHHHHHhhhccchhhh
Confidence 999999999999999999976554
No 132
>PHA03048 IMV membrane protein; Provisional
Probab=38.05 E-value=1.5e+02 Score=22.52 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCC-CCchhhhHHHHHHHHHHHHHHHHHH---HHHHHHhhc
Q 045142 245 HSVGYAIIILSIFNIFEGFNILNP-LKIWRLVYACILVALGAIAAILEVV---TRVMVIRQR 302 (316)
Q Consensus 245 ~~~G~~~~~l~~~ni~lG~~~~~~-~~~~~~~~~~~~~~~~~~~~~lev~---~~~~~~~~~ 302 (316)
...|.++++++.+=.+.=+....+ ...|...-+. ++++++.+++.++ .|.++|+..
T Consensus 15 li~GIiLL~~aCIfAfidfsK~k~~~~~wRalsii--~FIlgivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 15 LIGGIILLAASCIFAFVDFSKNKATVTVWRALSGI--AFVLGIVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred HHHHHHHHHHHHHHhhhhhhcCCCcchhHHHHHHH--HHHHHHHHHHHHHHHHHHhcccCCC
Confidence 345666555555544444443322 2345542221 2222222333333 377777644
No 133
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.93 E-value=1.7e+02 Score=23.22 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 045142 248 GYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 248 G~~~~~l~~~ni~lG~~~ 265 (316)
+.++.+-..+.+.+|+.+
T Consensus 24 ~~~~~~~~~~gl~~g~~l 41 (111)
T TIGR03750 24 GVAAGVGLAAGLVLGLLL 41 (111)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444555554
No 134
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=37.44 E-value=1.3e+02 Score=20.82 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=18.8
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHH
Q 045142 234 HKYRIWWNFYHHSVGYAIIILSIFNI 259 (316)
Q Consensus 234 ~~~R~~~~~~H~~~G~~~~~l~~~ni 259 (316)
+..|..|+.+|.+.|+..+++..+=+
T Consensus 35 ~~~~~~~~~iH~~~g~~~~~l~~~Hl 60 (64)
T PF14358_consen 35 GLNKHFWRNIHLWAGYLFLILIILHL 60 (64)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457888888888888887775533
No 135
>PF10966 DUF2768: Protein of unknown function (DUF2768); InterPro: IPR020076 This entry contains proteins with no known function.
Probab=37.23 E-value=1.3e+02 Score=20.98 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhh
Q 045142 143 NAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTG 193 (316)
Q Consensus 143 m~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~ 193 (316)
-.++++++.-.-+..+|| |. +..|++ ..+-.+|+++.++|..+.
T Consensus 7 ~~iglMfisv~~i~~sR~-Kl----k~~~lk--~i~~~vAy~lli~~gli~ 50 (58)
T PF10966_consen 7 GAIGLMFISVILIYFSRY-KL----KGKFLK--FIVSLVAYILLIVSGLIM 50 (58)
T ss_pred HHHHHHHHHHHHHHHHHH-HH----hChHHH--HHHHHHHHHHHHHHHHhe
Confidence 344555555556677776 32 233544 456677877777655443
No 136
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=37.16 E-value=1.3e+02 Score=24.72 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=17.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCccchhcc
Q 045142 270 KIWRLVYACILVALGAIAAILEVVTRVMVIRQRRKIENPETNVRA 314 (316)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~lev~~~~~~~~~~~~~~~~~~~~~~ 314 (316)
.+|......++...+...+-..+.++.+.+++|| .=++.+..|.
T Consensus 29 ~p~~~~~~l~~la~~~~~~a~~vr~~~~~~~~~~-~~~P~~aar~ 72 (138)
T PF11377_consen 29 IPWTAGVTLLVLAAVELWLAWQVRRRIEIGPGRR-QLNPLTAART 72 (138)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CcCHHHHHHH
Confidence 3455433333333333333334444442222333 3335555553
No 137
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=37.14 E-value=85 Score=29.20 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHH
Q 045142 181 SAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLG 219 (316)
Q Consensus 181 ~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~ 219 (316)
.+.+++..|+.+.+....+. .+....+|.+++.+.
T Consensus 8 f~~~mGtg~l~~~~~~~~~~----~~~~~~~~~~~~~~~ 42 (330)
T PF03595_consen 8 FGMVMGTGGLSNLLYLLPYH----FGGLAILSEVLFILA 42 (330)
T ss_dssp GHHHHHHHHHHHHHHTTTTT----STTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh----ccchhHHHHHHHHHH
Confidence 36677777777766543222 244556666655543
No 138
>PLN02292 ferric-chelate reductase
Probab=36.80 E-value=1e+02 Score=32.48 Aligned_cols=74 Identities=8% Similarity=0.053 Sum_probs=38.5
Q ss_pred ccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhh----HHHHHHHHHHHHHHHHHHHhhcccCCCCchhhhHHHH
Q 045142 205 HSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNF----YHHSVGYAIIILSIFNIFEGFNILNPLKIWRLVYACI 279 (316)
Q Consensus 205 ~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~----~H~~~G~~~~~l~~~ni~lG~~~~~~~~~~~~~~~~~ 279 (316)
...|+|+|-+++++.++-.++....-...++.....++ .-.+.|.++++++.+-++..+...... .+...|..-
T Consensus 206 ~~yHRWlGrii~ll~~lH~i~y~i~~~~~~~~~~~~~w~~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~-~YE~F~~~H 283 (702)
T PLN02292 206 IKYHIWLGHLVMTLFTSHGLCYIIYWISMNQVSQMLEWDRTGVSNLAGEIALVAGLVMWATTYPKIRRR-FFEVFFYTH 283 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhccccchHHHHHHHHHHHHHHHHHHhhHHHHhc-ccHhHHHHH
Confidence 46888888888888888876543211111111111111 123567777766666555554444333 344444433
No 139
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=36.23 E-value=1.9e+02 Score=22.01 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCC--CchhhhHHHHHHHHHHHHHHHHHHH---HHHHHhh
Q 045142 246 SVGYAIIILSIFNIFEGFNILNPL--KIWRLVYACILVALGAIAAILEVVT---RVMVIRQ 301 (316)
Q Consensus 246 ~~G~~~~~l~~~ni~lG~~~~~~~--~~~~~~~~~~~~~~~~~~~~lev~~---~~~~~~~ 301 (316)
..|.++++++.+=.+.=+.....+ ..|... -++++++++.+++.++- |-++|+-
T Consensus 16 i~GiiLL~~aCIfAfidfsK~~~~~~~~wRal--Sii~FI~giil~lG~~i~s~ygr~C~~ 74 (92)
T PF05767_consen 16 IGGIILLIAACIFAFIDFSKNTKPTDYTWRAL--SIICFILGIILTLGIVIFSMYGRYCRP 74 (92)
T ss_pred HHHHHHHHHHHHHHhhhhccCCCCchhHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 455555555544444433333322 235442 12222333333343333 7666654
No 140
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=36.09 E-value=2.9e+02 Score=24.01 Aligned_cols=12 Identities=8% Similarity=0.321 Sum_probs=6.0
Q ss_pred HHHHhhcccccC
Q 045142 296 VMVIRQRRKIEN 307 (316)
Q Consensus 296 ~~~~~~~~~~~~ 307 (316)
+++.|||-+..+
T Consensus 194 ~~~lkkk~~i~~ 205 (206)
T PF06570_consen 194 RFYLKKKYNITG 205 (206)
T ss_pred HHHHHHHhCCCC
Confidence 344555555543
No 141
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=35.98 E-value=79 Score=24.44 Aligned_cols=78 Identities=17% Similarity=0.091 Sum_probs=40.3
Q ss_pred hhhhhHhHHHHHHHHHHH-HHHhhhhcc--c---cCCC---ccccccchhhHHHHHHHHHHHHhh--hcccCCCCCCccc
Q 045142 171 WFYAHIICQSSAYLLGIA-GAGTGIYLG--N---KSHG---IQHSTHRTIGILLLVLGFIQVLAL--KLRPKKEHKYRIW 239 (316)
Q Consensus 171 wf~~H~~~q~~~~~~~~~-g~~l~~~~~--~---~~~~---~~~~~H~~lG~~~~~l~~~Q~l~~--~~rp~~~~~~R~~ 239 (316)
....|+.+-..+++++++ ++..-+... + .... ...+.-...|++.+.++++-.+.. .+|.+ +.-+.
T Consensus 33 ~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~r---~~ye~ 109 (125)
T PF01794_consen 33 LLRFHRWLGRLAFFLALLHGVLYLINWLRFGGWDWQEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRRR---RNYEI 109 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh---CcHHH
Confidence 445888887777666655 222211111 1 0100 113455567877777666665544 33421 12357
Q ss_pred hhhHHHHHHHHH
Q 045142 240 WNFYHHSVGYAI 251 (316)
Q Consensus 240 ~~~~H~~~G~~~ 251 (316)
|...|...-.+.
T Consensus 110 f~~~H~~~~~~~ 121 (125)
T PF01794_consen 110 FYYLHILFYIAF 121 (125)
T ss_pred HHHHHHHHHHHH
Confidence 888888744443
No 142
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=35.80 E-value=69 Score=30.09 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccC-CCCchhhhHHHHHHHHHHHHH
Q 045142 246 SVGYAIIILSIFNIFEGFNILN-PLKIWRLVYACILVALGAIAA 288 (316)
Q Consensus 246 ~~G~~~~~l~~~ni~lG~~~~~-~~~~~~~~~~~~~~~~~~~~~ 288 (316)
.+..+.+.+-+++.+.|++... |...|..+|.+++++++++.+
T Consensus 267 i~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~ 310 (322)
T COG0598 267 IVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLAL 310 (322)
T ss_pred HHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHH
Confidence 3444444555566666777765 335677788777766655443
No 143
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=35.67 E-value=3.5e+02 Score=25.04 Aligned_cols=57 Identities=9% Similarity=0.238 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccc------CCCC--chhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045142 242 FYHHSVGYAIIILSIFNIFEGFNIL------NPLK--IWRLVYACILVALGAIAAILEVVTRVMVIRQ 301 (316)
Q Consensus 242 ~~H~~~G~~~~~l~~~ni~lG~~~~------~~~~--~~~~~~~~~~~~~~~~~~~lev~~~~~~~~~ 301 (316)
++=..++.+++++|..|..+=++.. +.|+ +|..+++. .+.++.+.+|+.+-..+.++
T Consensus 209 plgI~~slv~v~iAa~sLllDFd~Ie~~v~~gaPk~~eW~~AfGL---~vTLVWLYlEILRLL~~l~~ 273 (274)
T PF12811_consen 209 PLGIGFSLVVVGIAALSLLLDFDFIEQGVRQGAPKKMEWYAAFGL---LVTLVWLYLEILRLLSKLQN 273 (274)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCChhhHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 4555666666666766766666543 2333 46555555 44555688999987666554
No 144
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=35.41 E-value=1.3e+02 Score=21.32 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=6.8
Q ss_pred HHHHHHhhcccCCC
Q 045142 256 IFNIFEGFNILNPL 269 (316)
Q Consensus 256 ~~ni~lG~~~~~~~ 269 (316)
.+.+..+...++..
T Consensus 8 ~l~~l~~~p~~nr~ 21 (66)
T PF11755_consen 8 FLALLWGPPFYNRV 21 (66)
T ss_pred HHHHHHhHHHhccC
Confidence 33444455555544
No 145
>cd01663 Cyt_c_Oxidase_I Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believ
Probab=35.39 E-value=4.7e+02 Score=26.23 Aligned_cols=61 Identities=13% Similarity=-0.030 Sum_probs=34.5
Q ss_pred cchhhHhhHHHHHHHHHHH-HHHHH---HHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHh
Q 045142 132 TLHFKQVHGIINAVSWGFL-MPVGA---ITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGT 192 (316)
Q Consensus 132 ~~~~~~~Hg~lm~~aw~~l-~p~gi---l~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l 192 (316)
-.+.+..||.+|...|..- +..|. ++.|..+.-.-..|.+=.++..+..++.++.++++..
T Consensus 45 y~~~~t~Hg~~mif~~~~p~~~~g~~~~lvP~~~g~~dl~~prln~~s~wl~~~g~~l~~~s~~~ 109 (488)
T cd01663 45 YNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAFPRLNNLSFWLLPPSLLLLLLSALV 109 (488)
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3678899999999888763 22333 2334332100012333345666667777776666655
No 146
>MTH00156 CYTB cytochrome b; Provisional
Probab=35.37 E-value=1.9e+02 Score=27.72 Aligned_cols=82 Identities=11% Similarity=0.040 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 183 YLLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
++..+.|+.+++.+..+. .|+ ..+.|.+=.-..++++.+..+-+++...-+ |+ .-++
T Consensus 32 ~~qiiTG~~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~gas~~~~~~~lH~~r~~~~gsy~---~~----~~W~ 104 (356)
T MTH00156 32 MIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYK---LK----HTWM 104 (356)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---Cc----chhH
Confidence 344667999988765321 122 246777656666666777777555432111 11 1489
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCc
Q 045142 247 VGYAIIILSIFNIFEGFNILNPLKI 271 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~~~~~~ 271 (316)
.|.+++++.++..++|..+.....+
T Consensus 105 ~G~~l~~~~~~~af~GY~Lpw~q~s 129 (356)
T MTH00156 105 SGVIILFLVMATAFLGYVLPWGQMS 129 (356)
T ss_pred hhHHHHHHHHHHHHeeeeccccchh
Confidence 9999999999999999999866543
No 147
>MTH00100 CYTB cytochrome b; Provisional
Probab=35.32 E-value=1.9e+02 Score=28.04 Aligned_cols=81 Identities=11% Similarity=0.064 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 183 YLLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
++-.+.|+.+++.+..+. .|+ ....|.+=--..++++.+..+-+++...-+ +.| =+.
T Consensus 42 ~~qiiTG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~~H~~r~~~~gsy~-~~~------~W~ 114 (379)
T MTH00100 42 ILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYL-FLE------TWN 114 (379)
T ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-Cch------HHH
Confidence 344667999988765321 122 246787666666667777777555442221 111 289
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCC
Q 045142 247 VGYAIIILSIFNIFEGFNILNPLK 270 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~~~~~ 270 (316)
.|.+++++.++..++|..+.....
T Consensus 115 ~G~~l~~l~~~~af~Gy~Lpw~q~ 138 (379)
T MTH00100 115 IGIILLFTVMATAFMGYVLPWGQM 138 (379)
T ss_pred HHHHHHHHHHHHHHHHhccChhhh
Confidence 999999999999999999976554
No 148
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=35.22 E-value=1.8e+02 Score=23.41 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 045142 247 VGYAIIILSIFNIFEGFNIL 266 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~ 266 (316)
++.++.+-..+.+.+|+.+.
T Consensus 26 l~~~a~~~~~~g~~~gl~la 45 (121)
T PF11990_consen 26 LGLAAGVGFVAGLVVGLPLA 45 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555543
No 149
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=34.74 E-value=1.5e+02 Score=32.53 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=16.3
Q ss_pred HHHHHHH-hhcccCC-------CCchhhhHHHHHHHH
Q 045142 255 SIFNIFE-GFNILNP-------LKIWRLVYACILVAL 283 (316)
Q Consensus 255 ~~~ni~l-G~~~~~~-------~~~~~~~~~~~~~~~ 283 (316)
+|+||.. |++.... -..|.+.|.+...++
T Consensus 1335 gWv~ImyDgldavavdqqPI~nhnpwmllYfIsfllI 1371 (1956)
T KOG2302|consen 1335 GWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISFLLI 1371 (1956)
T ss_pred chhhhhccchhhceeeeeccccCCcHHHHHHHHHHHH
Confidence 5677743 6654321 145888887655444
No 150
>MTH00224 CYTB cytochrome b; Provisional
Probab=34.03 E-value=1.7e+02 Score=28.45 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 183 YLLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
++-.+.|+.+++.+..+. .|+ ..+.|.+=.-..++++.+..+-+++...-+ +.| =++
T Consensus 43 ~~qiiTGi~L~~~Y~p~~~~Af~Sv~~i~~ev~~Gw~iR~~H~~gas~~f~~~~lH~~R~~~~gsy~-~~~------~W~ 115 (379)
T MTH00224 43 VIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFN-LSE------TWN 115 (379)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-CHH------HHH
Confidence 334667999988765321 122 246888877777778888887655432111 111 278
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCC
Q 045142 247 VGYAIIILSIFNIFEGFNILNPLK 270 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~~~~~ 270 (316)
.|.+++++.++..++|..+..+..
T Consensus 116 ~Gv~l~~l~~~~af~GY~Lpw~q~ 139 (379)
T MTH00224 116 IGVILFILTMATAFLGYVLPWGQM 139 (379)
T ss_pred HhHHHHHHHHHHHHeEeeeccccc
Confidence 999999999999999999976654
No 151
>MTH00033 CYTB cytochrome b; Provisional
Probab=33.90 E-value=2e+02 Score=27.97 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 183 YLLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
++-.+.|+.+++.+..+. .|+ ..+.|.+=.-..++++.+...-+++... +| +..=+.
T Consensus 39 ~~qiiTGi~La~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gAs~~f~~~ylHi~R~~~~gs----Y~---r~~~W~ 111 (383)
T MTH00033 39 GIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGG----YS---RVLTWI 111 (383)
T ss_pred HHHHHHHHHHHhhhcCCCcchHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----cc---ChHHHH
Confidence 334667999988765321 111 1356766666666667777775554321 12 123478
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCC
Q 045142 247 VGYAIIILSIFNIFEGFNILNPLK 270 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~~~~~ 270 (316)
.|.+++++.+++.++|..+...+.
T Consensus 112 ~Gv~ll~l~m~~aF~GYvLpw~qm 135 (383)
T MTH00033 112 VGVLIFFIMMLTAFIGYVLPWGQM 135 (383)
T ss_pred HhHHHHHHHHHHHHhhhcccccch
Confidence 999999999999999999976654
No 152
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=33.62 E-value=55 Score=30.34 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=6.6
Q ss_pred HHHHHHHhhcccc
Q 045142 293 VTRVMVIRQRRKI 305 (316)
Q Consensus 293 ~~~~~~~~~~~~~ 305 (316)
+.+.++.|||||+
T Consensus 277 iLYiWlyrrRK~s 289 (295)
T TIGR01478 277 ILYIWLYRRRKKS 289 (295)
T ss_pred HHHHHHHHhhccc
Confidence 3344455566654
No 153
>MTH00191 CYTB cytochrome b; Provisional
Probab=33.16 E-value=2.1e+02 Score=27.54 Aligned_cols=82 Identities=12% Similarity=0.087 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 183 YLLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
++..+.|+.+.+.+..+. .|+ ..+.|.+=.-..++++.+..+-+++...-+ +.| -++
T Consensus 39 ~~q~itG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~~R~~H~~gas~~~~~~~~H~~r~~~~gsy~-~~~------~W~ 111 (365)
T MTH00191 39 IIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYL-NKE------TWN 111 (365)
T ss_pred HHHHHHHHHHHhhhcCCchHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhheec-cch------hhH
Confidence 444667999988665321 122 247888766666677777777555432211 111 489
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCc
Q 045142 247 VGYAIIILSIFNIFEGFNILNPLKI 271 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~~~~~~ 271 (316)
.|.+++++.++..++|..+..+..+
T Consensus 112 ~G~~l~~l~~~~~f~Gy~Lpw~q~s 136 (365)
T MTH00191 112 VGVILLILSMATAFLGYVLPWGQMS 136 (365)
T ss_pred hhHHHHHHHHHHHHhhcccccccch
Confidence 9999999999999999999766543
No 154
>COG1276 PcoD Putative copper export protein [Inorganic ion transport and metabolism]
Probab=33.10 E-value=3.4e+02 Score=25.34 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=11.6
Q ss_pred CCCchhhhHHHHHHHHHHH
Q 045142 268 PLKIWRLVYACILVALGAI 286 (316)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~ 286 (316)
-+..|.+.|+-++..=.+.
T Consensus 212 ~~~l~tT~YGqlLL~K~~L 230 (289)
T COG1276 212 FSPLFTTAYGQLLLVKLIL 230 (289)
T ss_pred cchhhhhHhhHHHHHHHHH
Confidence 3455778888776544333
No 155
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=33.06 E-value=1e+02 Score=19.52 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 045142 282 ALGAIAAILEVVTRVMVIRQRR 303 (316)
Q Consensus 282 ~~~~~~~~lev~~~~~~~~~~~ 303 (316)
+++++.++.-.+.+...+.||.
T Consensus 12 V~vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 12 VVVGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHccc
Confidence 3333333333344434444433
No 156
>MTH00074 CYTB cytochrome b; Provisional
Probab=33.02 E-value=1.9e+02 Score=28.02 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 183 YLLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
++-.+.|+.+++.+..+. .|+ ....|.+=--..++++.+..+-+++...-+ |+ . =++
T Consensus 43 ~~qiitG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~Gw~~R~~H~~gas~~f~~~~lH~~r~~~~gsy~---~~-~---~W~ 115 (380)
T MTH00074 43 IAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYM---YK-E---TWN 115 (380)
T ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---Cc-h---HHH
Confidence 334667998888665321 122 246888766666667777777554432111 11 1 378
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCc
Q 045142 247 VGYAIIILSIFNIFEGFNILNPLKI 271 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~~~~~~ 271 (316)
.|.+++++.++..++|..+.....+
T Consensus 116 ~G~~l~~l~~~~af~Gy~Lpw~q~s 140 (380)
T MTH00074 116 IGVILLFLVMATAFVGYVLPWGQMS 140 (380)
T ss_pred hhHHHHHHHHHHHHHhccccccccc
Confidence 9999999999999999999866543
No 157
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=32.75 E-value=45 Score=22.02 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhccccc
Q 045142 287 AAILEVVTRVMVIRQRRKIE 306 (316)
Q Consensus 287 ~~~lev~~~~~~~~~~~~~~ 306 (316)
.+.+-+.-|...+|+|++-|
T Consensus 20 ~~F~gi~~w~~~~~~k~~~e 39 (49)
T PF05545_consen 20 VFFIGIVIWAYRPRNKKRFE 39 (49)
T ss_pred HHHHHHHHHHHcccchhhHH
Confidence 34455666666555555444
No 158
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=32.27 E-value=2.1e+02 Score=30.64 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=15.3
Q ss_pred CCCccchhhHHHHHHHHHHHH
Q 045142 234 HKYRIWWNFYHHSVGYAIIIL 254 (316)
Q Consensus 234 ~~~R~~~~~~H~~~G~~~~~l 254 (316)
-.+|+.|+++||.+-.+-..|
T Consensus 597 PnWRPRfkyyHW~LSflG~sL 617 (1075)
T KOG2082|consen 597 PNWRPRFKYYHWSLSFLGASL 617 (1075)
T ss_pred CCCCccchhhhhHHHHHHHHH
Confidence 368999999999876543333
No 159
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=32.13 E-value=85 Score=27.64 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHh
Q 045142 142 INAVSWGFLMPVGAITARYMKVFQSADPAWFYAHII 177 (316)
Q Consensus 142 lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~ 177 (316)
+-++||.+++|+++...+..+..- ++.|.++|..
T Consensus 119 ~G~ia~~lLl~LaiTS~~~~~rrL--g~~Wk~LH~l 152 (205)
T PRK05419 119 VGMAAFLILLPLALTSTRASQRRL--GKRWQKLHRL 152 (205)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHH
Confidence 456688888888888877655422 2378888876
No 160
>MTH00022 CYTB cytochrome b; Validated
Probab=32.07 E-value=2.1e+02 Score=27.78 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHH
Q 045142 184 LLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSV 247 (316)
Q Consensus 184 ~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~ 247 (316)
+-.+.|+.+++.+..+. .|+ ..+.|.+=--..++++.+...-+++...-+ +.| =+..
T Consensus 42 ~qiiTG~~La~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lHi~r~~~~gsy~-~~~------~W~~ 114 (379)
T MTH00022 42 IQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYL-KFH------VWNV 114 (379)
T ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-Ccc------hhhh
Confidence 34566999988765321 122 246888844444456666676555432111 111 2789
Q ss_pred HHHHHHHHHHHHHHhhcccCCCC
Q 045142 248 GYAIIILSIFNIFEGFNILNPLK 270 (316)
Q Consensus 248 G~~~~~l~~~ni~lG~~~~~~~~ 270 (316)
|.+++++.+++.++|..+.....
T Consensus 115 Gv~l~~l~~~~af~GyvLpw~q~ 137 (379)
T MTH00022 115 GVVIFLLTMATAFMGYVLPWGQM 137 (379)
T ss_pred cHHHHHHHHHHHHheeeeccccc
Confidence 99999999999999999976554
No 161
>PF09600 Cyd_oper_YbgE: Cyd operon protein YbgE (Cyd_oper_YbgE); InterPro: IPR011846 This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria [].
Probab=32.02 E-value=1.7e+02 Score=21.86 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=32.5
Q ss_pred cccchhhHHHHHHHHHHHHhhh-cccCCCCCCccchh-hHHHHHHHHHHHHHHHHH
Q 045142 206 STHRTIGILLLVLGFIQVLALK-LRPKKEHKYRIWWN-FYHHSVGYAIIILSIFNI 259 (316)
Q Consensus 206 ~~H~~lG~~~~~l~~~Q~l~~~-~rp~~~~~~R~~~~-~~H~~~G~~~~~l~~~ni 259 (316)
+...+.+..++..++.-.+-|+ ++|+ +..|+ .++-+.++.+++.+.+..
T Consensus 30 ~~~~~~~~ll~wavc~~~IhGvGF~Pr-----~~~Wr~lFsP~~a~~il~~~l~~~ 80 (82)
T PF09600_consen 30 GFSHWLAPLLIWAVCAGWIHGVGFRPR-----SWIWRLLFSPLIAWIILIYGLILY 80 (82)
T ss_pred CCcHHHHHHHHHHHHHHHhhccccchh-----HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5666788888877777766554 5653 35555 346778888877776543
No 162
>PTZ00370 STEVOR; Provisional
Probab=31.99 E-value=60 Score=30.16 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=5.9
Q ss_pred HHHHHHhhcccc
Q 045142 294 TRVMVIRQRRKI 305 (316)
Q Consensus 294 ~~~~~~~~~~~~ 305 (316)
.+.++.|||||+
T Consensus 274 lYiwlyrrRK~s 285 (296)
T PTZ00370 274 LYIWLYRRRKNS 285 (296)
T ss_pred HHHHHHHhhcch
Confidence 344444555554
No 163
>PRK09546 zntB zinc transporter; Reviewed
Probab=31.97 E-value=1.2e+02 Score=28.33 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccC-CCCchhhhHHHHHHHHHHHH
Q 045142 246 SVGYAIIILSIFNIFEGFNILN-PLKIWRLVYACILVALGAIA 287 (316)
Q Consensus 246 ~~G~~~~~l~~~ni~lG~~~~~-~~~~~~~~~~~~~~~~~~~~ 287 (316)
.+..+.+.+.+++.+.|++..+ |...|..+|.+++++++++.
T Consensus 269 ilt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~ 311 (324)
T PRK09546 269 LMAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLI 311 (324)
T ss_pred HHHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHH
Confidence 4445555677788888888764 33457777776665555443
No 164
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=31.82 E-value=51 Score=30.88 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 045142 276 YACILVALGAIAAILEVVTRVMVIRQRRKI 305 (316)
Q Consensus 276 ~~~~~~~~~~~~~~lev~~~~~~~~~~~~~ 305 (316)
.++++..++++.|+.-|.+++|.+|-+||-
T Consensus 262 iiaIliIVLIMvIIYLILRYRRKKKmkKKl 291 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILRYRRKKKMKKKL 291 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 344555556677888888999988888874
No 165
>PF15345 TMEM51: Transmembrane protein 51
Probab=31.81 E-value=46 Score=29.89 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 045142 246 SVGYAIIILSIFNI 259 (316)
Q Consensus 246 ~~G~~~~~l~~~ni 259 (316)
.+|..+++||++=+
T Consensus 11 AiG~Gml~LGiiM~ 24 (233)
T PF15345_consen 11 AIGVGMLALGIIMI 24 (233)
T ss_pred HHhHhHHHHhhHhe
Confidence 34555555555433
No 166
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=31.69 E-value=2e+02 Score=25.02 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 240 WNFYHHSVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 240 ~~~~H~~~G~~~~~l~~~ni~lG~~~ 265 (316)
.+.+..++--+++++++.++..|+..
T Consensus 76 ~~~~~~~ld~~L~~~~if~~~~gi~~ 101 (206)
T PF06570_consen 76 SNPWLMALDNSLLFFGIFSLLFGIMG 101 (206)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777777777777664
No 167
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=31.67 E-value=2.6e+02 Score=22.16 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=38.4
Q ss_pred hhhHhHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHH---hhhcccCCCCCCccchhhHHHHHHH
Q 045142 173 YAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVL---ALKLRPKKEHKYRIWWNFYHHSVGY 249 (316)
Q Consensus 173 ~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l---~~~~rp~~~~~~R~~~~~~H~~~G~ 249 (316)
+-|..--+++++++++.|.+... +.+ +.+..+ ++++.+.++|.+ .-|++-..++. ..|+..+.+++.
T Consensus 18 k~y~iGFvLsIiLT~ipF~~vm~-----~~~--~~~~~~-~~i~~lA~iQi~vqLvyFlHM~~~~e--g~w~~~~~iFt~ 87 (111)
T COG3125 18 KSYLIGFVLSIILTLIPFWVVMT-----GAL--SSTVTL-IIILGLAVIQILVHLVYFLHMNTKSE--GRWNMGALIFTI 87 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----ccc--chhhHH-HHHHHHHHHHHHHHHHHHhcccCCcc--cceehHHHHHHH
Confidence 33444444455555555544321 112 333333 455667888875 22333333222 457777777777
Q ss_pred HHHHHHHHH
Q 045142 250 AIIILSIFN 258 (316)
Q Consensus 250 ~~~~l~~~n 258 (316)
++.++-++.
T Consensus 88 ~i~vivvvG 96 (111)
T COG3125 88 FIIVIVVVG 96 (111)
T ss_pred HHHHHHHHH
Confidence 666555443
No 168
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=29.86 E-value=2.6e+02 Score=21.46 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=38.4
Q ss_pred hhHhHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHH--hh-hcccCCCCCCccchhhHHHHHHHH
Q 045142 174 AHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVL--AL-KLRPKKEHKYRIWWNFYHHSVGYA 250 (316)
Q Consensus 174 ~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l--~~-~~rp~~~~~~R~~~~~~H~~~G~~ 250 (316)
-|..--+++++++++.|.+... + .+ +-...-.++++++++|.+ .. |++-..+ .+..||....+++..
T Consensus 8 ~yviGFiLSiiLT~i~F~~v~~--~---~~---~~~~~~~~i~~lA~iQi~VqL~~FLHm~~~--~~~~~n~~~l~ft~~ 77 (94)
T TIGR02901 8 KHVNGFILSLLLTFLALWVALY--S---DL---PLAMGLTIIIIFAFIQAGLQLIMFMHAGES--EDGKVQIYNIYYSAF 77 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--c---cC---ChhHHHHHHHHHHHHHHHHHHHHheeecCC--cccchHHHHHHHHHH
Confidence 3555556677777777776432 1 11 111333456678889975 22 3333322 234588777777666
Q ss_pred HHHH
Q 045142 251 IIIL 254 (316)
Q Consensus 251 ~~~l 254 (316)
+.++
T Consensus 78 i~~i 81 (94)
T TIGR02901 78 IALV 81 (94)
T ss_pred HHHH
Confidence 5443
No 169
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=29.51 E-value=3.2e+02 Score=23.27 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=33.1
Q ss_pred HHHhhcccccCCcchhhhhHhH------HHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHH
Q 045142 157 TARYMKVFQSADPAWFYAHIIC------QSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVL 224 (316)
Q Consensus 157 ~aR~~k~~~~~~~~wf~~H~~~------q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l 224 (316)
.+||-|+-. +..-.+-|+.+ |.=-+++.+.++.+.. +....|.++|.++.++.+--.+
T Consensus 29 S~Rfa~Pd~--~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~--------f~sp~~iilglivvvlvi~~li 92 (188)
T KOG4050|consen 29 SDRFARPDF--NDFKKWNNRVISNLLYYQTNYFVTFITLFLLHG--------FISPQDIILGLIVVVLVIGTLI 92 (188)
T ss_pred cccccCCCC--ccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------HcCHHHHHHHHHHHHHHHHHHH
Confidence 467766532 12223356655 4434555555555432 3346788999999887665544
No 170
>TIGR00203 cydB cytochrome d oxidase, subunit II (cydB). part of a two component cytochrome D terminal complex. Terminal reaction in the aerobic respiratory chain.
Probab=29.22 E-value=5.2e+02 Score=25.06 Aligned_cols=57 Identities=19% Similarity=0.308 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHhhhcccCCCC-CCccchhhHHHHHHHHH---HHHHHHHHHHhhccc
Q 045142 210 TIGILLLVLGFIQVLALKLRPKKEH-KYRIWWNFYHHSVGYAI---IILSIFNIFEGFNIL 266 (316)
Q Consensus 210 ~lG~~~~~l~~~Q~l~~~~rp~~~~-~~R~~~~~~H~~~G~~~---~~l~~~ni~lG~~~~ 266 (316)
.-.+++++..++.....-+|.+..+ +.|+.|++....-+.+. +-.+..|+..|+.+.
T Consensus 88 lpl~l~L~gLI~RgvafefR~k~~~~~wr~~wd~~f~vgSll~p~~lGv~~g~~~~G~~~~ 148 (378)
T TIGR00203 88 IAMVLVLAALFFRPVAFEYRGKIDHLRWRKVWDWGLFIGSLVPPLVFGVAFGNLLQGVPFD 148 (378)
T ss_pred HHHHHHHHHHHHHHhheeecccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecc
Confidence 4444444455555555557777443 55888888776655543 334556778888754
No 171
>PF11862 DUF3382: Domain of unknown function (DUF3382); InterPro: IPR021807 This entry represents the N-terminal domain of the LivHM type high-affinity branched-chain amino acid transport system permease proteins. The domain is about 100 amino acids in length, and is found associated with PF02653 from PFAM.
Probab=28.98 E-value=2.6e+02 Score=21.52 Aligned_cols=75 Identities=12% Similarity=0.033 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhhhccccCCCccccc-----cchhhHHHHHHHHHHHHhhhc-ccCCCCC----Cc-c-chhhHHHHHHHH
Q 045142 183 YLLGIAGAGTGIYLGNKSHGIQHST-----HRTIGILLLVLGFIQVLALKL-RPKKEHK----YR-I-WWNFYHHSVGYA 250 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~~~~~~~~~-----H~~lG~~~~~l~~~Q~l~~~~-rp~~~~~----~R-~-~~~~~H~~~G~~ 250 (316)
+.+.+.+.++|+...++........ =.+++++...-.++|.+--.+ ++.+..+ .. . .....++|+..+
T Consensus 14 l~lvl~~pi~Gl~l~~~g~~L~~~~r~~~~~~~V~~~~~~~Fl~qL~r~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 93 (101)
T PF11862_consen 14 LALVLFGPIVGLKLDNQGGQLVLEPRWGLLAWWVAVAAAGRFLFQLFRPWLARRFKKAPSGVPVLPPDGLPSLQRWIIPL 93 (101)
T ss_pred HHHHHHHHheEEEEecCCcEEEEEecchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcCCCccccchHHHHHHH
Confidence 4445557777777653332222122 236666666677778762222 2221111 11 1 345678888888
Q ss_pred HHHHHHH
Q 045142 251 IIILSIF 257 (316)
Q Consensus 251 ~~~l~~~ 257 (316)
+++++++
T Consensus 94 llv~Alv 100 (101)
T PF11862_consen 94 LLVVALV 100 (101)
T ss_pred HHHHHHH
Confidence 8877753
No 172
>TIGR00930 2a30 K-Cl cotransporter.
Probab=28.90 E-value=2.7e+02 Score=30.50 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=18.7
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHH
Q 045142 235 KYRIWWNFYHHSVGYAIIILSIFNIFE 261 (316)
Q Consensus 235 ~~R~~~~~~H~~~G~~~~~l~~~ni~l 261 (316)
..|+.++++|.|+..+..++..+-++.
T Consensus 490 ~~RP~fk~~~~~~sllG~l~c~~lmf~ 516 (953)
T TIGR00930 490 GWRPRFKYYHWWLSLLGASLCCAIMFL 516 (953)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHHH
Confidence 457888888988777766666554443
No 173
>KOG4671 consensus Brain cell membrane protein 1 (BCMP1) [General function prediction only]
Probab=28.89 E-value=1.1e+02 Score=26.46 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=40.7
Q ss_pred chhhhhHhHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHHhhhcccCCC
Q 045142 170 AWFYAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVLALKLRPKKE 233 (316)
Q Consensus 170 ~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~ 233 (316)
.|++.-.++-+.+.++.++-+++++....-. ..+..-+++|.+++.+.++|+...++.|-+-
T Consensus 78 ~~~~aaAAmL~~g~~i~~I~filgl~~~cv~--~~~~fyRvi~~~l~laaV~qi~sLvIyPVk~ 139 (201)
T KOG4671|consen 78 DGGRAAAAMLFIGAAILVICFILGLFALCVP--LKLVFYRVIGGLLFLAAVLQIISLVIYPVKY 139 (201)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--ceEEeeeHHHHHHHHHHHHHhheeEEeeeee
Confidence 3555555555556666667777777543222 2245677899999999999987776666543
No 174
>PF00115 COX1: Cytochrome C and Quinol oxidase polypeptide I This family corresponds to chains a and n.; InterPro: IPR000883 Cytochrome c oxidase (1.9.3.1 from EC) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (1.10.3 from EC), is directly involved in the coupling between dioxygen reduction and proton pumping [, ]. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (CO I) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members [, , ]. In contrast to eukaryotes the respiratory chain of prokaryotes is branched to multiple terminal oxidases. The enzyme complexes vary in haem and copper composition, substrate type and substrate affinity. The different respiratory oxidases allow the cells to customize their respiratory systems according to a variety of environmental growth conditions []. It has been shown that eubacterial quinol oxidase was derived from cytochrome c oxidase in Gram-positive bacteria and that archaebacterial quinol oxidase has an independent origin. A considerable amount of evidence suggests that proteobacteria (Purple bacteria) acquired quinol oxidase through a lateral gene transfer from Gram-positive bacteria []. Nitric oxide reductase (NOR) (1.7.99.7 from EC) exists in denitrifying species of archae and eubacteria and is a heterodimer of cytochromes b and c. Phenazine methosulphate can act as acceptor.; GO: 0004129 cytochrome-c oxidase activity, 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0009060 aerobic respiration, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 3O0R_B 3FYI_C 2GSM_A 3FYE_C 3DTU_C 1M57_A 1M56_G 3ABK_N 2Y69_N 1V55_A ....
Probab=28.88 E-value=97 Score=30.54 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=37.2
Q ss_pred CcchhhHhhHHHHHHHHHHHHHHHH---HHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhh
Q 045142 131 GTLHFKQVHGIINAVSWGFLMPVGA---ITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGI 194 (316)
Q Consensus 131 ~~~~~~~~Hg~lm~~aw~~l~p~gi---l~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~ 194 (316)
.-+..+.+||.+|...|....-.|. ++.|..+.-.-..|+.-.+...+..++.++.++++.++.
T Consensus 41 ~y~~~~t~Hg~~mif~~~~~~~~g~~~y~~p~~~g~~d~~~prl~~~~fwl~~~~~~~~~~s~~~g~ 107 (447)
T PF00115_consen 41 PYNQLRTVHGNLMIFWFAMPFIIGFGNYLIPRMIGARDLAFPRLNWLSFWLLPIGVVLALVSIFLGG 107 (447)
T ss_pred ceeeeehhhheeeeeeccCchHHHHHheechhhcCCCCchhhhhhhEEEeehhhHHHHHhhcccccc
Confidence 3457889999999988877765562 122322210001134445555566667777766666654
No 175
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=28.88 E-value=3.8e+02 Score=23.12 Aligned_cols=29 Identities=7% Similarity=0.125 Sum_probs=19.6
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHHHHHhh
Q 045142 133 LHFKQVHGIINAVSWGFLMPVGAITARYM 161 (316)
Q Consensus 133 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~ 161 (316)
+....+|..+..++...+.-.++....|+
T Consensus 69 ~~~l~iHv~~~~~~ya~~~ia~~~al~~l 97 (214)
T PF01578_consen 69 SPWLYIHVPLALLGYAAFAIAALAALLYL 97 (214)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888877776555544444
No 176
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=28.76 E-value=1.8e+02 Score=25.09 Aligned_cols=7 Identities=57% Similarity=1.089 Sum_probs=2.9
Q ss_pred hhHHHHH
Q 045142 211 IGILLLV 217 (316)
Q Consensus 211 lG~~~~~ 217 (316)
.|+.+++
T Consensus 82 ~gI~l~i 88 (222)
T PF03006_consen 82 AGIFLLI 88 (222)
T ss_pred hhhhHhH
Confidence 3444443
No 177
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=28.74 E-value=1.2e+02 Score=23.52 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=32.6
Q ss_pred hhhHhHHHHHHHHHHHHHHhhhh-ccccCCCccccccchhhHHHHHHHHHHHHhhh
Q 045142 173 YAHIICQSSAYLLGIAGAGTGIY-LGNKSHGIQHSTHRTIGILLLVLGFIQVLALK 227 (316)
Q Consensus 173 ~~H~~~q~~~~~~~~~g~~l~~~-~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~ 227 (316)
.+=-.+..++.++.++|-+-.+. ..+.+++.....=.|+|-++++....+++-.|
T Consensus 42 ~~~~l~yaI~aVvglIGai~VY~k~~~Gd~dv~k~i~~w~GaciFli~~a~~l~af 97 (98)
T PF13572_consen 42 PVTKLMYAIGAVVGLIGAIRVYIKWNNGDQDVKKSIMSWFGACIFLIVAATVLPAF 97 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344555555555555544432 22223334457888999999998888877443
No 178
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=28.69 E-value=5.7e+02 Score=25.05 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=18.2
Q ss_pred ccccchhhHHHHHHHHHHHHh
Q 045142 205 HSTHRTIGILLLVLGFIQVLA 225 (316)
Q Consensus 205 ~~~H~~lG~~~~~l~~~Q~l~ 225 (316)
+..|++.|+..+++.++-.+.
T Consensus 76 Y~~HK~~sIlailL~l~H~~~ 96 (438)
T COG4097 76 YRFHKYTSILAILLLLAHNFI 96 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999998888753
No 179
>PLN02292 ferric-chelate reductase
Probab=28.57 E-value=6.3e+02 Score=26.74 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHhh--hcccCCCCCCccchhhHHHHHH
Q 045142 210 TIGILLLVLGFIQVLAL--KLRPKKEHKYRIWWNFYHHSVG 248 (316)
Q Consensus 210 ~lG~~~~~l~~~Q~l~~--~~rp~~~~~~R~~~~~~H~~~G 248 (316)
+.|++.++++++-.+.. .+|. +.=..|...|..+.
T Consensus 251 i~G~iAlv~~~il~v~Sl~~iRR----~~YE~F~~~HiL~~ 287 (702)
T PLN02292 251 LAGEIALVAGLVMWATTYPKIRR----RFFEVFFYTHYLYI 287 (702)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHh----cccHhHHHHHHHHH
Confidence 56777776665554433 3342 12256677888653
No 180
>COG3295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.47 E-value=38 Score=29.68 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=28.3
Q ss_pred ccch-hhHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 045142 237 RIWW-NFYHHSVGYAIIILSIFNIFEGFNILNPL 269 (316)
Q Consensus 237 R~~~-~~~H~~~G~~~~~l~~~ni~lG~~~~~~~ 269 (316)
|..| ++.|.|.|...+++...=...|+.+++++
T Consensus 21 rnkWLR~lH~W~~~~slv~~LlFaltGitLNH~~ 54 (213)
T COG3295 21 RNKWLRKLHQWSGAWSLVGMLLFALTGITLNHPD 54 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhceeecCCC
Confidence 3444 89999999999999999999999998765
No 181
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=28.14 E-value=92 Score=26.06 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=31.2
Q ss_pred ccchhhHHHHH--HHHHHHHhhh--c--ccCCCCCCccchhhHHHHHHHHHHHHHH
Q 045142 207 THRTIGILLLV--LGFIQVLALK--L--RPKKEHKYRIWWNFYHHSVGYAIIILSI 256 (316)
Q Consensus 207 ~H~~lG~~~~~--l~~~Q~l~~~--~--rp~~~~~~R~~~~~~H~~~G~~~~~l~~ 256 (316)
+=-++|+++.+ +.++||..|+ . +..+..+.|-.--..|..+|..+++.+.
T Consensus 93 ~ali~G~~tvl~p~~imqP~lG~G~aas~tP~p~~~r~~sl~aH~vfG~gLyl~~~ 148 (150)
T PF11158_consen 93 PALIFGLVTVLAPFFIMQPALGAGIAASKTPNPWKARLRSLIAHLVFGLGLYLSAL 148 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhccCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 44467776665 5888996443 3 2222233343445679999999988765
No 182
>PRK11099 putative inner membrane protein; Provisional
Probab=28.13 E-value=5.8e+02 Score=24.97 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=9.0
Q ss_pred ccccchhhHHHHHH
Q 045142 205 HSTHRTIGILLLVL 218 (316)
Q Consensus 205 ~~~H~~lG~~~~~l 218 (316)
.+++..+|-+++.+
T Consensus 283 ~~~~~~lGg~lFG~ 296 (399)
T PRK11099 283 AGPNAVIGGLLFGF 296 (399)
T ss_pred ccHHHHHHHHHHHH
Confidence 35677777766654
No 183
>MTH00119 CYTB cytochrome b; Provisional
Probab=27.80 E-value=3.1e+02 Score=26.53 Aligned_cols=81 Identities=10% Similarity=0.064 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 183 YLLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
++..+.|+.+.+.+..+. .|+ ....|.+=.-..++++.+..+-+++.. .+|+ ..-++
T Consensus 43 ~~qiitG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~ga~~~~~~~~lH~~r~~~~g----sy~~---~~~W~ 115 (380)
T MTH00119 43 ITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYG----SYLY---KETWN 115 (380)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----eecc---cchhh
Confidence 344667999988665321 122 246787666666666777776555432 1221 22489
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCC
Q 045142 247 VGYAIIILSIFNIFEGFNILNPLK 270 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~~~~~ 270 (316)
.|.+++++.+...++|..+..+..
T Consensus 116 ~Gv~l~~l~~~~~f~Gy~Lpw~q~ 139 (380)
T MTH00119 116 TGVILLLLLMATAFVGYVLPWGQM 139 (380)
T ss_pred hhhHHHHHHHHHHHHhcccchhhh
Confidence 999999999999999999976554
No 184
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=27.64 E-value=7.7e+02 Score=26.28 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 045142 139 HGIINAVSWGFLMPVGAITARY 160 (316)
Q Consensus 139 Hg~lm~~aw~~l~p~gil~aR~ 160 (316)
+-.++.++..++.-+-.+..||
T Consensus 577 ~~~~~a~~~a~~~i~iyi~~rF 598 (755)
T PRK13024 577 RNAIIAVLIALIGILLYILIRF 598 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555445566665
No 185
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=27.46 E-value=1.7e+02 Score=22.82 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045142 276 YACILVALGAIAAILEVVTRVMV 298 (316)
Q Consensus 276 ~~~~~~~~~~~~~~lev~~~~~~ 298 (316)
+.++.++.+++..++-...+++.
T Consensus 75 ~liv~~~~l~la~i~~~~~~~~l 97 (121)
T PF07332_consen 75 FLIVAGLYLLLALILLLIGRRRL 97 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334443
No 186
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=27.25 E-value=2.1e+02 Score=23.79 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhH--HHHHHHHHHHHHHhhh
Q 045142 140 GIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIIC--QSSAYLLGIAGAGTGI 194 (316)
Q Consensus 140 g~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~--q~~~~~~~~~g~~l~~ 194 (316)
.+|++++=.+++-.++=+.|+ +...-++|..- +.+|+.+.++|..+-+
T Consensus 13 ~ill~lG~~f~ligaIGllRf-------PD~ytRlHAatKa~TlG~~liLlg~~l~~ 62 (145)
T PRK12586 13 AIMILLGSIIALISAIGIVKF-------QDVFLRSHAATKSSTLSVLLTLIGVLIYF 62 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-------CcHHHHccccccchhhHHHHHHHHHHHHH
Confidence 566666666666556666775 23456899765 5677777777777643
No 187
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=27.18 E-value=1.1e+02 Score=21.15 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=24.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045142 269 LKIWRLVYACILVALGAIAAILEVVTRVMVIRQR 302 (316)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~lev~~~~~~~~~~ 302 (316)
...|.+.|.=++.++++++++|-.+.-....|.+
T Consensus 14 ~~~WlvtyaDlmTLLl~fFVlL~s~s~~d~~k~~ 47 (58)
T PF13677_consen 14 SPRWLVTYADLMTLLLAFFVLLFSMSSVDKEKFE 47 (58)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3579999999888888888777776655544433
No 188
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=27.15 E-value=5.4e+02 Score=24.28 Aligned_cols=58 Identities=17% Similarity=0.331 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHHhhhcccCCC-CCCccchhhHHHHHHHH---HHHHHHHHHHHhhcccC
Q 045142 210 TIGILLLVLGFIQVLALKLRPKKE-HKYRIWWNFYHHSVGYA---IIILSIFNIFEGFNILN 267 (316)
Q Consensus 210 ~lG~~~~~l~~~Q~l~~~~rp~~~-~~~R~~~~~~H~~~G~~---~~~l~~~ni~lG~~~~~ 267 (316)
.-..++++..++.....-+|.+.+ .+.|+.|++.-..-+.+ ++-....|+..|+....
T Consensus 83 lpl~liL~~li~RgvafefR~~~~~~~~r~~wd~~~~~gSll~~~~~G~~~g~~~~G~p~~~ 144 (328)
T PF02322_consen 83 LPLFLILLGLILRGVAFEFRHKADSPRWRRFWDWVFFIGSLLPPFLLGVALGNLVSGLPIDA 144 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccc
Confidence 334444455555666666777653 45677787766544443 23334557778877763
No 189
>MTH00213 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=27.04 E-value=90 Score=27.74 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh--cccCCCCchhhhHHHHHHHHHHH
Q 045142 240 WNFYHHSVGYAIIILSIFNIFEGF--NILNPLKIWRLVYACILVALGAI 286 (316)
Q Consensus 240 ~~~~H~~~G~~~~~l~~~ni~lG~--~~~~~~~~~~~~~~~~~~~~~~~ 286 (316)
-|++|..+-.+...+++.-+++-+ ++... ...++|.+-+.++.+.
T Consensus 21 kNpVhSaL~LIlvFi~iAgLyilLgAeFLA~--iQILVYVGAIaVLFLF 67 (239)
T MTH00213 21 HNFLASVFWLILTFIGSSGLFIVLGMEFLGL--IFLIVYVGAICIIFLF 67 (239)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhccHHHHH--HHHHHHHhHHHHHHHH
Confidence 478998888887777777766533 33321 2345676655544443
No 190
>PRK10588 hypothetical protein; Provisional
Probab=26.68 E-value=2.1e+02 Score=22.10 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=32.5
Q ss_pred cccchhhHHHHHHHHHHHHhhh-cccCCCCCCccchh-hHHHHHHHHHHHHHHH
Q 045142 206 STHRTIGILLLVLGFIQVLALK-LRPKKEHKYRIWWN-FYHHSVGYAIIILSIF 257 (316)
Q Consensus 206 ~~H~~lG~~~~~l~~~Q~l~~~-~rp~~~~~~R~~~~-~~H~~~G~~~~~l~~~ 257 (316)
+...++|..++...+.-.+=|+ ++| ++..|+ .+|-++++.+++.+..
T Consensus 45 ~~~~~~~~lliwavc~g~IhGVGF~P-----r~~~Wq~lFsP~~a~~iL~~g~~ 93 (97)
T PRK10588 45 SLEIWHGLLLMWAVCAGVIHGVGFRP-----QKVLWQGIFCPLPADIVLIVGLI 93 (97)
T ss_pred CccHHHHHHHHHHHHHHHhhhcccch-----hHHHHHHHHhhHHHHHHHHHHHH
Confidence 5667888888877777776554 665 335665 4577888888776644
No 191
>TIGR02112 cyd_oper_ybgE cyd operon protein YbgE. This model describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.
Probab=26.59 E-value=2e+02 Score=22.03 Aligned_cols=47 Identities=19% Similarity=0.459 Sum_probs=31.7
Q ss_pred cccchhhHHHHHHHHHHHHhhh-cccCCCCCCccchh-hHHHHHHHHHHHHHHH
Q 045142 206 STHRTIGILLLVLGFIQVLALK-LRPKKEHKYRIWWN-FYHHSVGYAIIILSIF 257 (316)
Q Consensus 206 ~~H~~lG~~~~~l~~~Q~l~~~-~rp~~~~~~R~~~~-~~H~~~G~~~~~l~~~ 257 (316)
+...+.|..++..++.-.+=|+ +||+ +..|+ .++-++|+.+++.+.+
T Consensus 41 ~~~~~~~~lliwavc~g~IhGVGF~Pr-----~~~Wq~lF~P~~a~~iLi~~l~ 89 (93)
T TIGR02112 41 GFNAVLALLMIWAVCILWIHGVGFRPR-----STLWQLLFSPILGYIILIYLLI 89 (93)
T ss_pred CccHHHHHHHHHHHHHHHHhhccccch-----HHHHHHHHhhHHHHHHHHHHHH
Confidence 5667888888887777777555 6663 35565 4577788877665543
No 192
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=26.40 E-value=5.5e+02 Score=24.19 Aligned_cols=54 Identities=24% Similarity=0.148 Sum_probs=29.8
Q ss_pred cccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 045142 206 STHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVGYAIIILSIFNI 259 (316)
Q Consensus 206 ~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni 259 (316)
++-..++-+..++.+.+.-..++.-+.+++.+...+...+..+....++..+-.
T Consensus 157 ~pf~ll~Gl~~v~~~~~~GA~~l~~kt~g~l~~rar~~a~~~~~~~~~~~~~~~ 210 (328)
T PF02322_consen 157 SPFSLLGGLAVVALFALHGAVFLALKTEGELRERARRWALRLGLAALVLFLAFA 210 (328)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444444554444445556666666677776655555444
No 193
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=25.84 E-value=21 Score=34.82 Aligned_cols=112 Identities=17% Similarity=0.177 Sum_probs=66.0
Q ss_pred chhhHhhHHHHHHHHH--HHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCCCc----ccc
Q 045142 133 LHFKQVHGIINAVSWG--FLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSHGI----QHS 206 (316)
Q Consensus 133 ~~~~~~Hg~lm~~aw~--~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~----~~~ 206 (316)
.....+|..++...+. ++-|++ +++|=.|.-+ ..+.|=+.|...--...++.++-...++.+......+ ...
T Consensus 278 ~~~~~~h~~~G~~~~~l~~lQ~~~-~l~Rp~~~~k-~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~ 355 (403)
T KOG4293|consen 278 GTVYSAHTDLGIILLVLAFLQPLA-LLLRPLPESK-IRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIKLGYGS 355 (403)
T ss_pred ceeeeecccchhHHHHHHHHHHHH-HHhcCCcccC-ceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEEeeeee
Confidence 4456778777777765 344443 3555222211 3455666777664444444444444444333222222 136
Q ss_pred ccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 207 THRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 207 ~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
.|..+|.+..++-.+|.....-|+.+....|...++.|+-
T Consensus 356 ~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (403)
T KOG4293|consen 356 ILAVLGLIAVILEILSWRITIERPSPSSMSRTSTNAPSRG 395 (403)
T ss_pred EEEEechhhhhhhhheeeeeecccCcccccccccCccccc
Confidence 8999999988888888777777777776667666766654
No 194
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=25.57 E-value=3.3e+02 Score=21.30 Aligned_cols=18 Identities=22% Similarity=0.683 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 045142 245 HSVGYAIIILSIFNIFEG 262 (316)
Q Consensus 245 ~~~G~~~~~l~~~ni~lG 262 (316)
+.+|..+++.++......
T Consensus 65 ~~ig~~~l~~~~~~~~~~ 82 (136)
T PF11188_consen 65 RRIGWLLLIISILSFIAN 82 (136)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555555555544443
No 195
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=25.38 E-value=4.6e+02 Score=28.19 Aligned_cols=102 Identities=15% Similarity=0.031 Sum_probs=47.9
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCCCccc-cccchhh
Q 045142 134 HFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQH-STHRTIG 212 (316)
Q Consensus 134 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~-~~H~~lG 212 (316)
..-+.|-++.+++-.+++ ..++.++.|.. +.. ...+++.++|+++|....+.-+.... +.|.+.-
T Consensus 7 ~~~~~~l~~~~lG~~lll--~~l~s~~lkeR---------l~L---s~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~l 72 (810)
T TIGR00844 7 EVTKAHVAYSCVGIFSSI--FSLVSLFVKEK---------LYI---GESMVASIFGLIVGPHCLNWFNPLSWGNTDSITL 72 (810)
T ss_pred cccchhhHHHHHHHHHHH--HHHHHHHHHhh---------cCC---cHHHHHHHHHHHhhhhhhccCChhhcccchHHHH
Confidence 345678888877644433 55566665521 111 12456666688877643321111101 1233332
Q ss_pred HHHHHHHHHHHH-hhhcccCCCCCCccchhhHHHHHHHHH
Q 045142 213 ILLLVLGFIQVL-ALKLRPKKEHKYRIWWNFYHHSVGYAI 251 (316)
Q Consensus 213 ~~~~~l~~~Q~l-~~~~rp~~~~~~R~~~~~~H~~~G~~~ 251 (316)
.+.=+.+++|.+ .|+--+.+ ..|+.|+.+-+.++.++
T Consensus 73 eIteIvL~I~LFa~Gl~L~~~--~Lrr~wrsV~rLl~~~M 110 (810)
T TIGR00844 73 EISRILLCLQVFAVSVELPRK--YMLKHWVSVTMLLVPVM 110 (810)
T ss_pred HHHHHHHHHHHHHHHHhCCHH--HHHHhHHHHHHHHHHHH
Confidence 233356677766 44322211 13345555555554444
No 196
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=25.34 E-value=5.9e+02 Score=24.19 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHhhhhccccCC-CccccccchhhHHHHHH-HHHHHH
Q 045142 177 ICQSSAYLLGIAGAGTGIYLGNKSH-GIQHSTHRTIGILLLVL-GFIQVL 224 (316)
Q Consensus 177 ~~q~~~~~~~~~g~~l~~~~~~~~~-~~~~~~H~~lG~~~~~l-~~~Q~l 224 (316)
..|++|+++.++|+++.......++ +.....|.++|=++.++ .+++.+
T Consensus 133 ~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~ 182 (334)
T PF06027_consen 133 WFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAV 182 (334)
T ss_pred HHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHH
Confidence 4578898999999887543321111 11246899999877754 333333
No 197
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=24.84 E-value=1.1e+02 Score=27.64 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHH
Q 045142 135 FKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGIL 214 (316)
Q Consensus 135 ~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~ 214 (316)
++++=|+||....---. .+||.-.. |+.|.+++.+++....++-.++.+. ..||+++
T Consensus 172 lFnwIGFlltycl~tT~-----agRYGA~~-----------------GfGLsLikwilIv~~sd~f~~y~n~-q~wLwwi 228 (262)
T KOG4812|consen 172 LFNWIGFLLTYCLTTTH-----AGRYGAIS-----------------GFGLSLIKWILIVRFSDDFESYFNG-QYWLWWI 228 (262)
T ss_pred HHHHHHHHHHHHHHhhH-----hhhhhhhh-----------------ccchhhheeeEEeeccccccccccc-chHHHHH
Q ss_pred HHHHHHHHHHhhhc
Q 045142 215 LLVLGFIQVLALKL 228 (316)
Q Consensus 215 ~~~l~~~Q~l~~~~ 228 (316)
++++.++-.+-+++
T Consensus 229 ~~vlG~ll~lr~~i 242 (262)
T KOG4812|consen 229 FLVLGLLLFLRGFI 242 (262)
T ss_pred HHHHHHHHHHHHHH
No 198
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=24.73 E-value=93 Score=32.19 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 045142 273 RLVYACILVALGAIAAILEVVTRVMVIRQRRKIEN 307 (316)
Q Consensus 273 ~~~~~~~~~~~~~~~~~lev~~~~~~~~~~~~~~~ 307 (316)
.++.+++++.++++..++-++.|+ ++|.+.|.++
T Consensus 391 ~~~~~~f~~if~iva~ii~~~L~R-~rr~~~ka~s 424 (807)
T KOG1094|consen 391 AILIIIFVAIFLIVALIIALMLWR-WRRLLSKASS 424 (807)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcc
Confidence 345566666565666666666666 3333433443
No 199
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=24.60 E-value=2.1e+02 Score=23.61 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=9.2
Q ss_pred HHHHHHHhhcccccCccchhcc
Q 045142 293 VTRVMVIRQRRKIENPETNVRA 314 (316)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~ 314 (316)
+.++++.+|+.+.. ++.|.|.
T Consensus 63 ~l~rr~~~~~~~~~-~~l~~~~ 83 (140)
T COG1585 63 LLGRRFVRRRLKPS-DGLNQRG 83 (140)
T ss_pred HHHHHHHhhccCCc-ccccchh
Confidence 44445545443232 2455543
No 200
>PF14007 YtpI: YtpI-like protein
Probab=24.45 E-value=2.6e+02 Score=21.25 Aligned_cols=19 Identities=37% Similarity=0.838 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 045142 246 SVGYAIIILSIFNIFEGFN 264 (316)
Q Consensus 246 ~~G~~~~~l~~~ni~lG~~ 264 (316)
..|.+.+++|..|++.|+.
T Consensus 61 iV~~ifl~lG~~n~~~G~r 79 (89)
T PF14007_consen 61 IVGAIFLVLGLFNLFAGIR 79 (89)
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 3444444444444444443
No 201
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=24.41 E-value=6.7e+02 Score=24.46 Aligned_cols=60 Identities=12% Similarity=-0.015 Sum_probs=33.9
Q ss_pred cccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 045142 206 STHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNIL 266 (316)
Q Consensus 206 ~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~ 266 (316)
..|-.++++++.+.+...+....+..+....++.-.. -+.+.+++.++..+|+.+|-...
T Consensus 219 a~Hll~al~i~~~l~~~~~~l~~~~~~~~~~~~~~~~-lr~l~~~~~~l~~lqI~lGa~Va 278 (403)
T PTZ00127 219 AAHLFNAFVIYSLLLWNGLTLILFALPSIAPFPELLK-MRLLARGLFALVFLTAMSGAFVA 278 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccccchh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888887777765433221111111111111 24566677777778888876654
No 202
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=24.37 E-value=2.3e+02 Score=25.34 Aligned_cols=18 Identities=6% Similarity=0.193 Sum_probs=10.6
Q ss_pred ccccchhhHHHHHHHHHH
Q 045142 205 HSTHRTIGILLLVLGFIQ 222 (316)
Q Consensus 205 ~~~H~~lG~~~~~l~~~Q 222 (316)
...|....++..++.++-
T Consensus 21 da~~s~~D~~~~~~~l~~ 38 (268)
T TIGR01297 21 DAIHSLSDVAASAIALLA 38 (268)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457777776666544433
No 203
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=24.29 E-value=3.1e+02 Score=23.46 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHH-HHHHHhhc
Q 045142 245 HSVGYAIIILSIFNIFEGFNILNPLKIWRLVYACILVALGAIAAILEVVT-RVMVIRQR 302 (316)
Q Consensus 245 ~~~G~~~~~l~~~ni~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~lev~~-~~~~~~~~ 302 (316)
+.+|=..+-++++-+++.+. .+..+...+..++.+++++.+++|.+- |+..+|+=
T Consensus 75 ~~i~e~fmP~alv~lv~~~v---~~~~~~~~~~~~~~~~~~~~~iid~~~l~r~vkk~v 130 (170)
T PF11241_consen 75 RNIGEFFMPVALVLLVLSFV---VPSPQVQLYVTLAMYVLLLLVIIDGVILGRRVKKRV 130 (170)
T ss_pred cchHHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544444 222233334333333334444555444 66665543
No 204
>PF10002 DUF2243: Predicted membrane protein (DUF2243); InterPro: IPR018719 This entry includes membrane proteins of unknown function.
Probab=24.25 E-value=4.2e+02 Score=22.04 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHHhhhc
Q 045142 177 ICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVLALKL 228 (316)
Q Consensus 177 ~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~ 228 (316)
.+.....+++++|+.+-.....+. ....+.-...|-+++....+|.+-|.+
T Consensus 50 LFHa~~~~~~~~Gl~lL~r~~~r~-~~~~~~~~~~g~~l~G~G~Fnl~dG~v 100 (143)
T PF10002_consen 50 LFHAFTWVATVAGLFLLWRADRRR-RRPWSGRRLWGGVLLGWGLFNLVDGVV 100 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-ccCccchhhHHHHHHHhhHHHHHHHHH
Confidence 334556677777777655322221 122367778899999999999886654
No 205
>MTH00053 CYTB cytochrome b; Provisional
Probab=24.22 E-value=3.4e+02 Score=26.40 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 183 YLLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
++-.+.|+.+++.+..+. .|+ ..+.|..=--..++++.+...-+++... +|+ ..=+.
T Consensus 43 ~~qiiTGi~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gs----y~~---~~~W~ 115 (381)
T MTH00053 43 IIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGS----YTK---IIVWN 115 (381)
T ss_pred HHHHHHHHHHHheccCChHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----cCC---chHHH
Confidence 334566898887655321 122 2467886666666666677765554321 221 23478
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCC
Q 045142 247 VGYAIIILSIFNIFEGFNILNPLK 270 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~~~~~ 270 (316)
.|.+++++.+++.++|..+.....
T Consensus 116 ~Gv~l~~l~m~~af~GYvLpw~qm 139 (381)
T MTH00053 116 VGVLIFLLMILTAFIGYVLPWGQM 139 (381)
T ss_pred hhHHHHHHHHHHHHHHhccchhhh
Confidence 999999999999999999876554
No 206
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=23.62 E-value=6.3e+02 Score=23.89 Aligned_cols=89 Identities=9% Similarity=-0.071 Sum_probs=38.8
Q ss_pred hhhHhHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHH---hhhcccCCCCCCc------cchhhH
Q 045142 173 YAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVL---ALKLRPKKEHKYR------IWWNFY 243 (316)
Q Consensus 173 ~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l---~~~~rp~~~~~~R------~~~~~~ 243 (316)
+++.-+.-+..++...-++..+....+. ...-..+|-+.+++.++-.. .-++||....... ...+++
T Consensus 124 ~~r~~l~~~~~~~~pl~~~~~~~~~~~~----~~~~d~LGrl~~ii~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 199 (340)
T PF12794_consen 124 RLRRQLRWLIWVLVPLLFISIFAENLPD----GLARDVLGRLAFIILLLLLAVFLWRLLRPGWGLYQPKPDSWIHRLRYL 199 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCch----hhhhhhHHHHHHHHHHHHHHHHHHHHHccccccccCCCcchhHHHHHH
Confidence 4444444444444444444433321111 12334677666655444432 2235555432221 233333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 045142 244 HHSVGYAIIILSIFNIFEGFNI 265 (316)
Q Consensus 244 H~~~G~~~~~l~~~ni~lG~~~ 265 (316)
=+.+-.++.+.-++-+..|+..
T Consensus 200 ~~~~li~~Pl~li~la~~GY~y 221 (340)
T PF12794_consen 200 WWPLLILAPLALIVLALLGYYY 221 (340)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 3344444444455555566664
No 207
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=23.60 E-value=5.8e+02 Score=23.45 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=37.3
Q ss_pred ccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccC
Q 045142 205 HSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNILN 267 (316)
Q Consensus 205 ~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~~ 267 (316)
...|-.++++++.+.+...+...-+. + ...+.....--+++...+.++..+|+.+|-...+
T Consensus 131 ~~~Hl~~a~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~l~~~qi~lGa~va~ 191 (302)
T PF02628_consen 131 VTLHLLLALLIFALLVWLALRARRPE-E-SPRRLPRPRRLRWLAWAALVLVFIQIALGALVAG 191 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcc-c-cccccccchhHHHHHHHHHHHHHHHHhccceecc
Confidence 47888888888877766655443321 1 1112222233345666777788888888887653
No 208
>PRK15003 cytochrome d ubiquinol oxidase subunit 2; Provisional
Probab=23.52 E-value=6.9e+02 Score=24.29 Aligned_cols=85 Identities=16% Similarity=0.236 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhhcccCCCC-CCccchhhHHHHHHHH---HHHHHHHHHHHhhccc-CC---------CCchhhhHHH
Q 045142 213 ILLLVLGFIQVLALKLRPKKEH-KYRIWWNFYHHSVGYA---IIILSIFNIFEGFNIL-NP---------LKIWRLVYAC 278 (316)
Q Consensus 213 ~~~~~l~~~Q~l~~~~rp~~~~-~~R~~~~~~H~~~G~~---~~~l~~~ni~lG~~~~-~~---------~~~~~~~~~~ 278 (316)
+++++..++...+.=+|.+..+ ++|+.|++....-+.+ ++-....|+..|+.+. ++ ...|...|.+
T Consensus 91 ~l~L~gLI~RgvafEfR~k~~~~~wr~~Wd~~f~igSll~~f~~Gv~lg~~v~G~p~~~d~~~~~~~~g~~~~~l~Pfsl 170 (379)
T PRK15003 91 ILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGL 170 (379)
T ss_pred HHHHHHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccchHhhccHHHH
Confidence 3333344444455556766333 4578888776544433 3334556778888662 11 1123445666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045142 279 ILVALGAIAAILEVVTRVM 297 (316)
Q Consensus 279 ~~~~~~~~~~~lev~~~~~ 297 (316)
+.++..+....+--..|..
T Consensus 171 l~Gl~~v~~~~~~GA~~L~ 189 (379)
T PRK15003 171 LAGVVSVGMIITQGATYLQ 189 (379)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6555554444444444443
No 209
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=23.48 E-value=3.6e+02 Score=23.35 Aligned_cols=10 Identities=10% Similarity=0.228 Sum_probs=5.5
Q ss_pred hHHHHHHHHH
Q 045142 242 FYHHSVGYAI 251 (316)
Q Consensus 242 ~~H~~~G~~~ 251 (316)
|.+..+|.+.
T Consensus 23 W~QlvLgvVs 32 (183)
T PF12263_consen 23 WIQLVLGVVS 32 (183)
T ss_pred HHHHHHHHHH
Confidence 4555555555
No 210
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=23.44 E-value=37 Score=26.35 Aligned_cols=35 Identities=9% Similarity=0.208 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 045142 272 WRLVYACILVALGAIAAILEVVTRVMVIRQRRKIE 306 (316)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~lev~~~~~~~~~~~~~~ 306 (316)
+.+..++++++++++.++.=++-...+|+|+++++
T Consensus 61 ~~iili~lls~v~IlVily~IyYFVILRer~~~~~ 95 (101)
T PF06024_consen 61 GNIILISLLSFVCILVILYAIYYFVILRERQKSIR 95 (101)
T ss_pred ccchHHHHHHHHHHHHHHhhheEEEEEeccccccc
Confidence 33445555555544444433443444555555444
No 211
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=23.23 E-value=3e+02 Score=26.95 Aligned_cols=15 Identities=7% Similarity=0.016 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHHHH
Q 045142 241 NFYHHSVGYAIIILS 255 (316)
Q Consensus 241 ~~~H~~~G~~~~~l~ 255 (316)
.+...+...+.++..
T Consensus 407 ~~~~~~~~~~~~~~~ 421 (478)
T TIGR00913 407 SQTGPYGSYYALFFN 421 (478)
T ss_pred CCCcchHHHHHHHHH
Confidence 344444444444333
No 212
>PF04483 DUF565: Protein of unknown function (DUF565); InterPro: IPR007572 This family represents Ycf20, it is found in cyanobacteria and is also encoded in plant and algal chloroplasts; its function is unknown. As the family is exclusively found in phototrophic organisms it may therefore play a role in photosynthesis.
Probab=22.99 E-value=1e+02 Score=21.48 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhccc
Q 045142 288 AILEVVTRVMVIRQRRK 304 (316)
Q Consensus 288 ~~lev~~~~~~~~~~~~ 304 (316)
++.|+..|.++++++++
T Consensus 15 ~~~E~i~~l~Y~~~~~~ 31 (60)
T PF04483_consen 15 LFIEVISRLRYSKPKKK 31 (60)
T ss_pred HHHHHHHHHhhcccccc
Confidence 67999999988777653
No 213
>COG3768 Predicted membrane protein [Function unknown]
Probab=22.91 E-value=2.8e+02 Score=26.22 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=22.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhcccC---CCCchhh
Q 045142 237 RIWWNFYHHSVGYAIIILSIFNIFEGFNILN---PLKIWRL 274 (316)
Q Consensus 237 R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~~---~~~~~~~ 274 (316)
|+.+.+.-..+|-..++++...+.-+.++.. ....|.-
T Consensus 58 rpr~s~~k~~~~a~~vLf~~Av~~q~~qwi~d~~qr~dWl~ 98 (350)
T COG3768 58 RPRSSFWKIMLGAGGVLFSLAVGLQSVQWIRDLFQRADWLG 98 (350)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444555566777777777777766666542 2344654
No 214
>TIGR01191 ccmC heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=22.61 E-value=5e+02 Score=22.39 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=52.5
Q ss_pred cchhhHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhhhccccC-C-Cccccccc
Q 045142 132 TLHFKQVHGIINAVSWGFLMPVGAITARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGIYLGNKS-H-GIQHSTHR 209 (316)
Q Consensus 132 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~-~-~~~~~~H~ 209 (316)
..+.+..|-..+.++.+.+.-.++....|+.. +++.+-.+-..+-.+|+++..+|++.|-.-.+.. + -+..++=.
T Consensus 9 ~~ri~yiHVp~a~~~~~~~~~~~~~s~~yL~~---~~~~~D~la~~~a~iGf~f~tl~LitGaiWak~~WG~~W~WDpr~ 85 (184)
T TIGR01191 9 SVRIMYVHVPAAWMAIGVYIMMAIASFIFLVW---KHPLSDLAAKAAAPIGAVFTLIALVTGSLWGKPMWGTWWVWDARL 85 (184)
T ss_pred ceeehhhHHHHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHH
Confidence 47889999999999988877777766667643 2344444444445568888888888886544332 1 23334444
Q ss_pred hhhHHHHHH
Q 045142 210 TIGILLLVL 218 (316)
Q Consensus 210 ~lG~~~~~l 218 (316)
..-+++..+
T Consensus 86 t~~lIlwli 94 (184)
T TIGR01191 86 TSVLILFLL 94 (184)
T ss_pred HHHHHHHHH
Confidence 444444433
No 215
>cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found mainly in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two
Probab=22.49 E-value=8e+02 Score=24.64 Aligned_cols=62 Identities=13% Similarity=0.026 Sum_probs=37.3
Q ss_pred cchhhHhhHHHHHHHHHHHHHHHHH---HHHhhcccccCCcchhhhhHhHHHHHHHHHHHHHHhhh
Q 045142 132 TLHFKQVHGIINAVSWGFLMPVGAI---TARYMKVFQSADPAWFYAHIICQSSAYLLGIAGAGTGI 194 (316)
Q Consensus 132 ~~~~~~~Hg~lm~~aw~~l~p~gil---~aR~~k~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l~~ 194 (316)
-.+.+.+|+..|..+|....-.|.. +.|..+.-. ..+.+-.+...+-.++.+++++++..|.
T Consensus 86 f~~~rt~H~~~~if~w~~~~~~g~~~ylvp~~~g~~l-~~~~l~~~~~w~~~~g~~l~~~~~~~G~ 150 (493)
T cd01661 86 FGRLRPLHTNAVIFGFGGNALIATSFYVVQRTCRARL-AGGNLAWFVFWGYNLFIVLAATGYLLGI 150 (493)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CChhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4678999999999999987666643 334443211 1233333444455556666666666554
No 216
>PF14007 YtpI: YtpI-like protein
Probab=22.45 E-value=3.5e+02 Score=20.53 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045142 241 NFYHHSVGYAIIILSIFNIFEGFNILNPLKIWRLVYACILVALGAIAAILEVVTRVMVI 299 (316)
Q Consensus 241 ~~~H~~~G~~~~~l~~~ni~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~lev~~~~~~~ 299 (316)
...-.++|..+..+|+-|.++ .+.....+.+++..++.+..++...-.++.+.
T Consensus 33 aka~ialG~fl~~fgiNQ~~~------~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy~ 85 (89)
T PF14007_consen 33 AKANIALGIFLILFGINQMFL------FGSTVRLIVGAIFLVLGLFNLFAGIRAYRHYR 85 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------cccHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 455567888888888777776 22223334444444444444444444444443
No 217
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=21.92 E-value=7.6e+02 Score=27.72 Aligned_cols=59 Identities=15% Similarity=0.056 Sum_probs=26.6
Q ss_pred ccchhhHHHHHHHHHHHHhh---hcccCCC---CCCccchhhHHHHHHHHH---HHHHHHHHHHhhcc
Q 045142 207 THRTIGILLLVLGFIQVLAL---KLRPKKE---HKYRIWWNFYHHSVGYAI---IILSIFNIFEGFNI 265 (316)
Q Consensus 207 ~H~~lG~~~~~l~~~Q~l~~---~~rp~~~---~~~R~~~~~~H~~~G~~~---~~l~~~ni~lG~~~ 265 (316)
....+|-+++++.++-.... ++|+... .+.....+.+|+.+..++ .++.++-+++|+..
T Consensus 627 ~~~~lgr~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~P~~l~~l~~~GY~y 694 (1109)
T PRK10929 627 FSGTLGRLCFILLCGALSLVTLSLKRAGIPLYLDKEGSGDNIINHALWNLLIGAPLVAALASALGYLA 694 (1109)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHhcccchhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33477777776655443322 3444332 222223344454444433 23333344556553
No 218
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=21.69 E-value=5.4e+02 Score=22.35 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 045142 246 SVGYAIIILSIFNIFEGFNIL 266 (316)
Q Consensus 246 ~~G~~~~~l~~~ni~lG~~~~ 266 (316)
.++....+-|++.+..++..-
T Consensus 106 lia~~~i~~GI~ri~~~~~~~ 126 (185)
T COG3247 106 LIAIWFIASGILRIVVAFRLR 126 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 344444444555555554443
No 219
>MTH00100 CYTB cytochrome b; Provisional
Probab=21.42 E-value=5.3e+02 Score=24.96 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=52.2
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHhhccccc----------C--Ccch--hhhhHhHHHHHHHHHHHHHHhhhhcccc
Q 045142 134 HFKQVHGIINAVSWGFLMPVGAITARYMKVFQS----------A--DPAW--FYAHIICQSSAYLLGIAGAGTGIYLGNK 199 (316)
Q Consensus 134 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~----------~--~~~w--f~~H~~~q~~~~~~~~~g~~l~~~~~~~ 199 (316)
+....=|.+..+++.+.+-.|++++-|+.+-.. . .--| ..+|..--..-+++..+=+.=++..++.
T Consensus 28 ~~~~~~G~ll~~~~~~qiiTG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~~H~~r~~~~gsy 107 (379)
T MTH00100 28 SSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSY 107 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344555899999999999999999988765311 0 0112 2334321111111111111112222222
Q ss_pred CCCccccccchhhHHHHHHHHHHHHhhhcccCC
Q 045142 200 SHGIQHSTHRTIGILLLVLGFIQVLALKLRPKK 232 (316)
Q Consensus 200 ~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~ 232 (316)
.... ==++|++++.+.....+.|+.-|.-
T Consensus 108 ~~~~----~W~~G~~l~~l~~~~af~Gy~Lpw~ 136 (379)
T MTH00100 108 LFLE----TWNIGIILLFTVMATAFMGYVLPWG 136 (379)
T ss_pred cCch----HHHHHHHHHHHHHHHHHHHhccChh
Confidence 1111 2478999999999999988877643
No 220
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=21.40 E-value=4.2e+02 Score=21.00 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=25.8
Q ss_pred hhhHhHHHHHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHH
Q 045142 173 YAHIICQSSAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVL 224 (316)
Q Consensus 173 ~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l 224 (316)
+-|..--+++++++++.|.+... + .. .....-.++++++++|.+
T Consensus 26 k~yviGFiLSiiLT~I~F~~V~~--~---~l---~~~~~~~~I~~lAvvQi~ 69 (110)
T TIGR02908 26 KKQIVTFALMIFLTLIAFFAVML--D---EI---DKWFVIPFILLLAAVQVA 69 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--c---cC---ChhHHHHHHHHHHHHHHH
Confidence 44555556666666666665432 1 11 334555666778888875
No 221
>PF11893 DUF3413: Domain of unknown function (DUF3413); InterPro: IPR024588 This entry represents an uncharacterised domain found in the N-terminal of predicted HI0842 type membrane sulphatases.
Probab=21.31 E-value=6.2e+02 Score=22.94 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhhccc
Q 045142 287 AAILEVVTRVMVIRQRRK 304 (316)
Q Consensus 287 ~~~lev~~~~~~~~~~~~ 304 (316)
..++....|.+.+|++|+
T Consensus 149 ~~~~a~~~w~kl~~~~~~ 166 (253)
T PF11893_consen 149 ELLLANWLWKKLRKLQRR 166 (253)
T ss_pred HHHHHHHHHHHhhhhhHH
Confidence 333334446666555543
No 222
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=21.29 E-value=3.1e+02 Score=19.46 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=24.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcccCC
Q 045142 238 IWWNFYHHSVGYAIIILSIFNIFEGFNILNP 268 (316)
Q Consensus 238 ~~~~~~H~~~G~~~~~l~~~ni~lG~~~~~~ 268 (316)
+.++.+-+++...++++|.+.+-.+..+.+.
T Consensus 5 ~~fk~iW~~~DIi~Fila~i~i~it~F~~n~ 35 (63)
T PF06341_consen 5 KFFKTIWKYFDIILFILAMIFINITAFLINQ 35 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677789999999999999888776543
No 223
>PTZ00358 hypothetical protein; Provisional
Probab=21.20 E-value=7.4e+02 Score=23.77 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHH--HHhhcc--cCCC---CchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 242 FYHHSVGYAIIILSIFNI--FEGFNI--LNPL---KIWRLVYACILVALGAIAAILEVVTRVMVIRQRR 303 (316)
Q Consensus 242 ~~H~~~G~~~~~l~~~ni--~lG~~~--~~~~---~~~~~~~~~~~~~~~~~~~~lev~~~~~~~~~~~ 303 (316)
+-|-..|.+..+|++... +-|-.- .-.| +.|.- |+..+.+++++-+++.+......+..+.
T Consensus 105 ~~ypIYgiavvlL~ILggTLyCGWKCnLFcRPCCkSQyiC-YgSaiVvVLviL~vlavt~sl~~~~~~~ 172 (367)
T PTZ00358 105 WTYPIYGIAVVLLGILGGTLYCGWKCNLFCRPCCKSQYIC-YGSAIVVVLVILIVLAVTASLIAFVGRS 172 (367)
T ss_pred cCCchHHHHHHHHHHHHhhhhcccccCcccccccccceee-ehhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344455666666665433 224432 2222 23433 4433333444445566655554444333
No 224
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=21.19 E-value=4.8e+02 Score=22.75 Aligned_cols=29 Identities=3% Similarity=-0.003 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccCC
Q 045142 240 WNFYHHSVGYAIIILSIFNIFEGFNILNP 268 (316)
Q Consensus 240 ~~~~H~~~G~~~~~l~~~ni~lG~~~~~~ 268 (316)
+..+..+.-....+-+.+-+.+|..+-+.
T Consensus 139 ~~~F~~~n~~ga~iW~~~~~~lGy~~G~~ 167 (208)
T COG0586 139 LRRFLLYNILGALLWALVLTLLGYLLGEV 167 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44555555556666666666777776544
No 225
>PF10242 L_HGMIC_fpl: Lipoma HMGIC fusion partner-like protein; InterPro: IPR019372 This is a group of proteins expressed from a series of genes referred to as Lipoma HGMIC fusion partner-like. The proteins carry four highly conserved transmembrane domains. In certain instances, as in LHFPL5, mutations cause deafness in humans [] or hypospadias []. LHFPL1 is transcribed in six liver tumour cell lines [].
Probab=21.08 E-value=2.4e+02 Score=24.15 Aligned_cols=56 Identities=11% Similarity=-0.050 Sum_probs=38.4
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHH-hhc-ccccCCcchhhhhHhHHHHHHHHHHHHHHh
Q 045142 135 FKQVHGIINAVSWGFLMPVGAITAR-YMK-VFQSADPAWFYAHIICQSSAYLLGIAGAGT 192 (316)
Q Consensus 135 ~~~~Hg~lm~~aw~~l~p~gil~aR-~~k-~~~~~~~~wf~~H~~~q~~~~~~~~~g~~l 192 (316)
..++=.++|.++++++.-...+..- +.+ .. .++..+++...+|.++.++.++|.++
T Consensus 69 ~Wkaa~~~~~~g~~Ll~~~~~~~L~~~c~~~~--~~~sv~~i~g~~Q~~A~l~~~~g~~~ 126 (181)
T PF10242_consen 69 AWKAAAFFVGIGCVLLLLIALLSLFSCCFRSI--CSRSVFKICGWLQFVAGLCLLLGCLL 126 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCceEeeechHHHHHHHHHHHHhhee
Confidence 4677889999998886655544322 212 22 13556788899999998888877765
No 226
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=21.06 E-value=6.1e+02 Score=25.33 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHH
Q 045142 241 NFYHHSVGYAII 252 (316)
Q Consensus 241 ~~~H~~~G~~~~ 252 (316)
.+...+..++++
T Consensus 401 m~~~p~~~~l~l 412 (462)
T COG1113 401 MPLYPFTNYLTL 412 (462)
T ss_pred cccccHHHHHHH
Confidence 445555555543
No 227
>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport
Probab=20.69 E-value=2.1e+02 Score=22.67 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 045142 274 LVYACILVALGAIAAILEVVT 294 (316)
Q Consensus 274 ~~~~~~~~~~~~~~~~lev~~ 294 (316)
+.|.+-+.......+++|...
T Consensus 64 ~~y~~~l~~tl~~~~~~~~~~ 84 (118)
T PF04178_consen 64 IIYFISLILTLYFAFILKSYG 84 (118)
T ss_pred HHHHHHHHHHHHHHHHHhhHH
Confidence 355554444444445555443
No 228
>TIGR01620 hyp_HI0043 conserved hypothetical protein, TIGR01620. This model includes putative membrane proteins from alpha and gamma proteobacteria, each making up their own clade. The two clades have less than 25% identity between them. We could not find support for the assignment to the sequence from Brucella of being a GTP-binding protein.
Probab=20.65 E-value=3.3e+02 Score=25.38 Aligned_cols=12 Identities=8% Similarity=-0.158 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhh
Q 045142 290 LEVVTRVMVIRQ 301 (316)
Q Consensus 290 lev~~~~~~~~~ 301 (316)
=|.....++++.
T Consensus 68 rE~~~l~RL~~~ 79 (289)
T TIGR01620 68 REWRRLMRLNAR 79 (289)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 229
>TIGR01191 ccmC heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=20.33 E-value=3.7e+02 Score=23.25 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=19.7
Q ss_pred chhhhhHhHHHHHHHHHHHHHHhhh
Q 045142 170 AWFYAHIICQSSAYLLGIAGAGTGI 194 (316)
Q Consensus 170 ~wf~~H~~~q~~~~~~~~~g~~l~~ 194 (316)
..+++|++...++..+..++++.++
T Consensus 11 ri~yiHVp~a~~~~~~~~~~~~~s~ 35 (184)
T TIGR01191 11 RIMYVHVPAAWMAIGVYIMMAIASF 35 (184)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999988777766666665
No 230
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.05 E-value=3.3e+02 Score=21.66 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccc-C-----CCCchhhhHHHHHHHHHHHH
Q 045142 245 HSVGYAIIILSIFNIFEGFNIL-N-----PLKIWRLVYACILVALGAIA 287 (316)
Q Consensus 245 ~~~G~~~~~l~~~ni~lG~~~~-~-----~~~~~~~~~~~~~~~~~~~~ 287 (316)
.+++.+++++|.+-+.+|+.+. + ..+.|....+++++++=+++
T Consensus 44 I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y 92 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFY 92 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHH
Confidence 3788888888888888887654 2 23456555555555554443
No 231
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=20.02 E-value=4.7e+02 Score=25.25 Aligned_cols=8 Identities=13% Similarity=0.127 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 045142 243 YHHSVGYA 250 (316)
Q Consensus 243 ~H~~~G~~ 250 (316)
+..+++.+
T Consensus 388 ~~~~l~~~ 395 (442)
T TIGR00908 388 LTPGVALV 395 (442)
T ss_pred hHHHHHHH
Confidence 34444443
Done!