Query 045142
Match_columns 316
No_of_seqs 189 out of 982
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 18:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d7b_A Cellobiose dehydrogenas 99.6 1.9E-15 6.6E-20 129.9 12.2 111 1-121 51-177 (186)
2 4gd3_A NI/Fe-hydrogenase 1 B-t 87.7 9.2 0.00031 32.8 12.7 22 135-157 18-39 (235)
3 1kqf_C FDH-N gamma, formate de 84.9 2.8 9.5E-05 35.6 7.7 29 239-267 108-136 (217)
4 2l2t_A Receptor tyrosine-prote 75.0 5.5 0.00019 25.3 4.5 12 274-285 12-23 (44)
5 2ks1_B Epidermal growth factor 74.3 4.3 0.00015 25.7 3.9 13 274-286 13-25 (44)
6 2knc_A Integrin alpha-IIB; tra 65.4 11 0.00037 25.0 4.5 36 270-306 11-46 (54)
7 2l8s_A Integrin alpha-1; trans 64.0 11 0.00036 25.0 4.2 38 270-308 8-45 (54)
8 3j1z_P YIIP, cation efflux fam 60.3 89 0.003 27.7 11.4 82 182-266 22-107 (306)
9 2jwa_A Receptor tyrosine-prote 60.3 20 0.00067 22.7 4.8 24 279-302 18-41 (44)
10 3ayf_A Nitric oxide reductase; 57.0 1.4E+02 0.0047 30.6 13.2 56 134-194 350-412 (800)
11 1vf5_A Cytochrome B6; photosyn 56.0 67 0.0023 27.3 9.2 60 205-269 83-142 (215)
12 4gd3_A NI/Fe-hydrogenase 1 B-t 51.5 1.1E+02 0.0038 25.8 12.6 55 173-227 20-82 (235)
13 4ev6_A Magnesium transport pro 46.2 24 0.00081 32.0 5.1 39 249-287 287-326 (339)
14 3h90_A Ferrous-iron efflux pum 40.9 1.4E+02 0.0047 25.9 9.2 82 181-264 12-96 (283)
15 1vry_A Glycine receptor alpha- 35.5 77 0.0026 22.3 5.2 56 253-309 12-70 (76)
16 2k1a_A Integrin alpha-IIB; sin 34.8 31 0.0011 21.5 2.7 33 270-303 9-41 (42)
17 2iub_A CORA, divalent cation t 32.3 19 0.00064 33.1 2.1 34 254-287 316-350 (363)
18 1pp9_C Cytochrome B; cytochrom 32.1 1.6E+02 0.0053 27.3 8.2 80 184-270 43-138 (379)
19 1kqf_C FDH-N gamma, formate de 28.9 2.4E+02 0.0082 23.1 12.9 128 133-264 12-175 (217)
20 2qjy_A Cytochrome B; cytochrom 28.3 1.7E+02 0.0059 27.7 7.9 83 183-270 56-154 (445)
21 3cx5_C Cytochrome B-C1 complex 25.8 2.1E+02 0.0072 26.5 7.9 83 183-270 41-139 (385)
22 2gsm_A Cytochrome C oxidase su 24.5 4.9E+02 0.017 25.3 11.7 22 141-162 347-368 (566)
23 2rdd_B UPF0092 membrane protei 22.5 86 0.0029 18.6 3.1 9 295-303 21-29 (37)
24 3s8f_C Cytochrome C oxidase po 22.0 84 0.0029 18.6 2.8 22 136-159 12-33 (34)
25 3aqp_A Probable secdf protein- 21.8 6.1E+02 0.021 25.3 15.2 14 206-219 620-633 (741)
26 2nr1_A NR1 M2, M2; receptor, s 21.4 71 0.0024 17.8 2.2 16 140-155 10-25 (27)
27 1mhs_A Proton pump, plasma mem 21.3 4.5E+02 0.015 27.2 10.2 13 284-296 865-877 (920)
28 4djk_A Probable glutamate/gamm 20.2 1.7E+02 0.006 27.1 6.5 16 245-260 413-428 (511)
29 2k21_A Potassium voltage-gated 20.0 1.6E+02 0.0054 22.9 4.8 33 270-302 49-81 (138)
No 1
>1d7b_A Cellobiose dehydrogenase; B-type cytochrome, Met/His ligation, beta sandwich, Fe(II)- protoporphyrin IX, oxidoreductase; HET: NAG BMA HEM 1PG; 1.90A {Phanerochaete chrysosporium} SCOP: b.1.9.1 PDB: 1d7d_A* 1d7c_A* 1pl3_A*
Probab=99.63 E-value=1.9e-15 Score=129.91 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=88.7
Q ss_pred CCCCceEEEEECCCCCCCCCCcEEEEEEcCCCcEEEEEeeeccccccc-CCCCccceeccceeEeeCCEEEEEEEEe-cC
Q 045142 1 MKPTRWVAWAINPTGKGMVGSQSLVAYRNPNGILKAYTSPVMGYGTNL-QEGNLSFQVPKISADFSNNEMTIFATIV-LP 78 (316)
Q Consensus 1 ~~~~gWva~GfS~~g~~M~gsd~vI~~~~~~G~v~v~~~~~~g~~~p~-~~~~~~~~l~~~s~~~~~g~~t~~f~~~-l~ 78 (316)
|.+.||+|||+ |++|.|++|+|+|+|. |++++++|+.+||.+|. ++++.+++++..+. ++++++++.|+|+ |.
T Consensus 51 p~~~gW~g~g~---Gg~M~gs~l~v~w~~~-~~v~~S~R~a~g~~~P~~y~~~~~~~lL~gs~-vn~t~~~~~f~C~~C~ 125 (186)
T 1d7b_A 51 PIASKWIGIAL---GGAMNNDLLLVAWANG-NQIVSSTRWATGYVQPTAYTGTATLTTLPETT-INSTHWKWVFRCQGCT 125 (186)
T ss_dssp ETTCCEEEEET---TSSSSSSCEEEEEEET-TEEEEEEEECSSSSCCEECCSSCEEEECTTCE-ECSSEEEEEEEEETTT
T ss_pred cCCCCEEEEec---CCCCCCCcEEEEEeCC-CEEEEEEEEecCccCCCccCCCceEEEccccc-EeCCEEEEEEEeCCCc
Confidence 56789999999 6799999999999984 88999999999999886 77778888887664 4899999988885 42
Q ss_pred C---C-----CCceeEEeeecCCCC------CCCCCCCCCCCCCCccceEEeeccCc
Q 045142 79 K---N-----MTTVSHVWQEGPVRG------DNHLGMHPLGGDNVKSMGTLDLLSGK 121 (316)
Q Consensus 79 ~---~-----~~~~~~IwA~G~~~~------~~~l~~H~~~~~~~~s~~~ldl~~g~ 121 (316)
. + .+...+|||+++..+ +..+.+|+..| .+.+||....
T Consensus 126 ~w~~~g~~~~ts~~~~iwA~~~~~p~~~~~~~a~~~~H~~~G-----~~~~dL~~a~ 177 (186)
T 1d7b_A 126 EWNNGGGIDVTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFG-----FFGIDYSTAH 177 (186)
T ss_dssp BCTTSCBCCTTSEEEEEEEEESSCCSCTTCTTCCCCCCSEEE-----EEEEEGGGCB
T ss_pred ccCCCCccccCCCCeEEEEECCCCCCCCCCCcccchhhhCcc-----eEEEEccccc
Confidence 1 1 122389999976532 45799999866 7899999754
No 2
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=87.74 E-value=9.2 Score=32.84 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=12.9
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHH
Q 045142 135 FKQVHGIINAVSWGFLMPVGAIT 157 (316)
Q Consensus 135 ~~~~Hg~lm~~aw~~l~p~gil~ 157 (316)
.+..| +++.+++.+++..|..+
T Consensus 18 ~R~~H-W~~a~~ii~l~~tG~~~ 39 (235)
T 4gd3_A 18 VRIWH-WLTVLCMAVLMVTGYFI 39 (235)
T ss_dssp TTHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHh
Confidence 44556 56666666666666544
No 3
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=84.85 E-value=2.8 Score=35.62 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=22.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcccC
Q 045142 239 WWNFYHHSVGYAIIILSIFNIFEGFNILN 267 (316)
Q Consensus 239 ~~~~~H~~~G~~~~~l~~~ni~lG~~~~~ 267 (316)
.+|+..+..=.+++++..+.+.+|+.++.
T Consensus 108 ~~n~~~~~~~~~l~~l~~~~~~TG~~~~~ 136 (217)
T 1kqf_C 108 KYNAGQKMMFWSIMSMIFVLLVTGVIIWR 136 (217)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667776667778888889999988874
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=75.05 E-value=5.5 Score=25.26 Aligned_cols=12 Identities=8% Similarity=-0.202 Sum_probs=5.0
Q ss_pred hhHHHHHHHHHH
Q 045142 274 LVYACILVALGA 285 (316)
Q Consensus 274 ~~~~~~~~~~~~ 285 (316)
++-+++.+++++
T Consensus 12 IA~gVVgGv~~v 23 (44)
T 2l2t_A 12 IAAGVIGGLFIL 23 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred EEEeehHHHHHH
Confidence 444444434433
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=74.31 E-value=4.3 Score=25.73 Aligned_cols=13 Identities=8% Similarity=-0.013 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHHH
Q 045142 274 LVYACILVALGAI 286 (316)
Q Consensus 274 ~~~~~~~~~~~~~ 286 (316)
++-+++.++++++
T Consensus 13 IA~gVVgGv~~~~ 25 (44)
T 2ks1_B 13 IATGMVGALLLLL 25 (44)
T ss_dssp STHHHHHHHHHHH
T ss_pred EEeehhHHHHHHH
Confidence 4444444444443
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=65.36 E-value=11 Score=24.96 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=20.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 045142 270 KIWRLVYACILVALGAIAAILEVVTRVMVIRQRRKIE 306 (316)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~lev~~~~~~~~~~~~~~ 306 (316)
+-|.++..++.++++...+++-.+++-.+ ||+++.+
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK~GFF-kR~~~~~ 46 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWKVGFF-KRNRPPL 46 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTTCCSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcc-cCCCCCc
Confidence 34666666666666555555555665554 5555443
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=63.95 E-value=11 Score=25.01 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=22.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCc
Q 045142 270 KIWRLVYACILVALGAIAAILEVVTRVMVIRQRRKIENP 308 (316)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~lev~~~~~~~~~~~~~~~~ 308 (316)
+-|.+...++.++++...+++-.+++-. +||+++.+..
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~GF-FKR~~~~~~~ 45 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKIGF-FKRPLKKKME 45 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSCCSCCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCc-ccCCCcchhh
Confidence 3476666666666665555555555554 4555555533
No 8
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=60.29 E-value=89 Score=27.70 Aligned_cols=82 Identities=17% Similarity=0.096 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHHhhhcccC-CC---CCCccchhhHHHHHHHHHHHHHHH
Q 045142 182 AYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVLALKLRPK-KE---HKYRIWWNFYHHSVGYAIIILSIF 257 (316)
Q Consensus 182 ~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~-~~---~~~R~~~~~~H~~~G~~~~~l~~~ 257 (316)
.++++++-++.++..++.+ -.....|...-++..++.++-.-.. -||. ++ +..| .=...=...|.++++++..
T Consensus 22 n~~l~~~k~~ag~~sgS~A-LlaDa~hsl~D~~s~~i~l~~~~~s-~k~~d~~~pyG~~R-~E~l~al~~~~~l~~~~~~ 98 (306)
T 3j1z_P 22 ALTLITIKLLAWLYSGSAS-MLASLTDSFADTLASIINFIAIRYA-IVPADHDHRYGHGK-AEPLAALAQSAFIMGSAFL 98 (306)
T ss_dssp HHHHTHHHHHTCTTSSSSC-CCTHHHHTTHHHHHHHHHHHHHHHH-TSCCCCTTSSCCTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccCCCchhh-HHHHHHHHHHHHHHHHHHH
Confidence 3455556666666544332 2345788887777665544322111 2322 11 1111 1122334566666666666
Q ss_pred HHHHhhccc
Q 045142 258 NIFEGFNIL 266 (316)
Q Consensus 258 ni~lG~~~~ 266 (316)
-++-++.-.
T Consensus 99 i~~eai~~l 107 (306)
T 3j1z_P 99 LLFYGGERL 107 (306)
T ss_dssp HHHHHHHTT
T ss_pred HHHHhhhhe
Confidence 666666543
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=60.28 E-value=20 Score=22.67 Aligned_cols=24 Identities=8% Similarity=-0.051 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 045142 279 ILVALGAIAAILEVVTRVMVIRQR 302 (316)
Q Consensus 279 ~~~~~~~~~~~lev~~~~~~~~~~ 302 (316)
++++++++.+.+-+.-|.+-+|++
T Consensus 18 vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHhheehhhhh
Confidence 333333333334444444443333
No 10
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=57.00 E-value=1.4e+02 Score=30.59 Aligned_cols=56 Identities=13% Similarity=-0.022 Sum_probs=34.0
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHH---HHHhhcccccCCcc----hhhhhHhHHHHHHHHHHHHHHhhh
Q 045142 134 HFKQVHGIINAVSWGFLMPVGAI---TARYMKVFQSADPA----WFYAHIICQSSAYLLGIAGAGTGI 194 (316)
Q Consensus 134 ~~~~~Hg~lm~~aw~~l~p~gil---~aR~~k~~~~~~~~----wf~~H~~~q~~~~~~~~~g~~l~~ 194 (316)
.++.+||.+|++ |+...-.|.. +-|..+ ++|. .-.+...+-.++++++++++.+|.
T Consensus 350 ~lrT~Hg~~mIf-~~~~~~~g~~~ylvP~~~g----~dp~~~~~L~~~~fwl~~~g~vl~~~s~~~G~ 412 (800)
T 3ayf_A 350 IAKGYHLQLAIF-WIATAWLGMGIFIAPLVGG----QEPKKQGLLVDLLFWALVVLVGGSMIGQWLGV 412 (800)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHT----SCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC----CCCccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567899999999 8776655532 233322 1233 334455555666777777777754
No 11
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=56.03 E-value=67 Score=27.35 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=38.7
Q ss_pred ccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 045142 205 HSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSVGYAIIILSIFNIFEGFNILNPL 269 (316)
Q Consensus 205 ~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~G~~~~~l~~~ni~lG~~~~~~~ 269 (316)
...|..=.-..++++.+...-++..-.-+.++ ..=+..|.+++++..++.++|.-+....
T Consensus 83 R~~H~~gAs~ffi~~ylHi~Rglyygsy~~p~-----~~~W~~Gv~l~~l~m~~aF~GYvLPwgq 142 (215)
T 1vf5_A 83 RSIHRWSASMMVLMMILHVFRVYLTGGFKKPR-----ELTWISGVILAVITVSFGVTGYSLPWDQ 142 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSC-----SHHHHHHHHHHHHHHHHHHHHTTTTCBH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhcccCC-----CceeHhHHHHHHHHHHHHHcccccCCCc
Confidence 35677766666677777777555432211111 1236788888888888888888877554
No 12
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=51.52 E-value=1.1e+02 Score=25.82 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=33.7
Q ss_pred hhhHhHHHHHHHHHHHHHHhhhhcc---cc-CCCc----cccccchhhHHHHHHHHHHHHhhh
Q 045142 173 YAHIICQSSAYLLGIAGAGTGIYLG---NK-SHGI----QHSTHRTIGILLLVLGFIQVLALK 227 (316)
Q Consensus 173 ~~H~~~q~~~~~~~~~g~~l~~~~~---~~-~~~~----~~~~H~~lG~~~~~l~~~Q~l~~~ 227 (316)
-+|+..-++-+++.+.|+.+..... .+ ...+ ....|..+|++++++.++-.+.++
T Consensus 20 ~~HW~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~ 82 (235)
T 4gd3_A 20 IWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAF 82 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788766655566666766543211 11 1011 124799999999999888876544
No 13
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=46.16 E-value=24 Score=31.99 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhcccC-CCCchhhhHHHHHHHHHHHH
Q 045142 249 YAIIILSIFNIFEGFNILN-PLKIWRLVYACILVALGAIA 287 (316)
Q Consensus 249 ~~~~~l~~~ni~lG~~~~~-~~~~~~~~~~~~~~~~~~~~ 287 (316)
.+.+.+.+++.+.|++..+ |...|..+|.+++++++++.
T Consensus 287 ~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~ 326 (339)
T 4ev6_A 287 TIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVII 326 (339)
T ss_dssp HHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHH
Confidence 3344566667777888764 44567777777666655443
No 14
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=40.88 E-value=1.4e+02 Score=25.92 Aligned_cols=82 Identities=17% Similarity=0.112 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhhhccccCCCccccccchhhHHHHHHHHHHHHhhhccc-CCCCCC-ccch-hhHHHHHHHHHHHHHHH
Q 045142 181 SAYLLGIAGAGTGIYLGNKSHGIQHSTHRTIGILLLVLGFIQVLALKLRP-KKEHKY-RIWW-NFYHHSVGYAIIILSIF 257 (316)
Q Consensus 181 ~~~~~~~~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp-~~~~~~-R~~~-~~~H~~~G~~~~~l~~~ 257 (316)
+.++++++.++.|+..++.. -.....|...-++..++.++-.-.. -|| .++.++ .... ...=...|.++++++..
T Consensus 12 ~n~~l~~~k~~~g~~t~S~a-llaDa~hsl~D~~~~~~~l~~~~~s-~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~ 89 (283)
T 3h90_A 12 MASLLLLIKIFAWWYTGSVS-ILAALVDSLVDIGASLTNLLVVRYS-LQPADDNHSFGHGKAESLAALAQSMFISGSALF 89 (283)
T ss_dssp HHHTTHHHHHHSSCSSSSSC-CCSTTTHHHHHHHHHHHHHHHHHHH-TCCCCSSCSSCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666544332 2345789888887776554433222 133 221111 0112 22334566666666655
Q ss_pred HHHHhhc
Q 045142 258 NIFEGFN 264 (316)
Q Consensus 258 ni~lG~~ 264 (316)
-++-++.
T Consensus 90 i~~eai~ 96 (283)
T 3h90_A 90 LFLTGIQ 96 (283)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555655
No 15
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=35.47 E-value=77 Score=22.31 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhcccCCCCchhh---hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc
Q 045142 253 ILSIFNIFEGFNILNPLKIWRL---VYACILVALGAIAAILEVVTRVMVIRQRRKIENPE 309 (316)
Q Consensus 253 ~l~~~ni~lG~~~~~~~~~~~~---~~~~~~~~~~~~~~~lev~~~~~~~~~~~~~~~~~ 309 (316)
+|.+.+...+....-++-++.- +|.+.. .+.++.-++|...--...||+++.+..|
T Consensus 12 vLtmtt~~~~~~~~lPkVSYikAiDvw~~~C-~~FVF~aLlEya~V~y~~r~~~~~~~~~ 70 (76)
T 1vry_A 12 VLTLTTQSSGSRASLPKVSYVKAIDIWLAVC-LLFVFSALLEYAAVNFVSRKKKKHRLLE 70 (76)
T ss_dssp HHHHHHHHHCTTTCCCSHHHHHHHHHTHHHH-HHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhcCcccCCCCccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccchhh
Confidence 3445555555543333322322 333222 2334445678777666666666665554
No 16
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=34.77 E-value=31 Score=21.46 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=17.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045142 270 KIWRLVYACILVALGAIAAILEVVTRVMVIRQRR 303 (316)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~lev~~~~~~~~~~~ 303 (316)
+-|.+...++.++++...+++-.+++-. +||++
T Consensus 9 p~wiIi~s~l~GLllL~li~~~LwK~GF-FkR~~ 41 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMWKVGF-FKRNR 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTT-TCCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCc-ccCCC
Confidence 3466666666655555444455555443 34443
No 17
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=32.33 E-value=19 Score=33.05 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=11.2
Q ss_pred HHHHHHHHhhcccC-CCCchhhhHHHHHHHHHHHH
Q 045142 254 LSIFNIFEGFNILN-PLKIWRLVYACILVALGAIA 287 (316)
Q Consensus 254 l~~~ni~lG~~~~~-~~~~~~~~~~~~~~~~~~~~ 287 (316)
+.+++.+.|++..+ |...|..+|.+++++++++.
T Consensus 316 ~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~ 350 (363)
T 2iub_A 316 LTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIA 350 (363)
T ss_dssp HHHHTTSCC--------------CHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHH
Confidence 34444445555543 33457777877666555443
No 18
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=32.11 E-value=1.6e+02 Score=27.31 Aligned_cols=80 Identities=11% Similarity=0.122 Sum_probs=47.9
Q ss_pred HHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHHH
Q 045142 184 LLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHSV 247 (316)
Q Consensus 184 ~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~~ 247 (316)
+..+.|+.++..+..+. .|+ ....|..=.-..++++.+-..-++... .+|+. -=+..
T Consensus 43 iqi~TGi~Lam~Y~p~~~~Af~Sv~~I~~dV~~GwliR~~H~~gAs~ffi~~ylHi~Rglyyg----sy~~~---~~W~~ 115 (379)
T 1pp9_C 43 LQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYG----SYTFL---ETWNI 115 (379)
T ss_dssp HHHHHHHHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----GGGSH---HHHHH
T ss_pred HHHHHHHHHheeeeCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----eecCc---ceehh
Confidence 34456888877654321 111 135676655555556666666554432 11111 14678
Q ss_pred HHHHHHHHHHHHHHhhcccCCCC
Q 045142 248 GYAIIILSIFNIFEGFNILNPLK 270 (316)
Q Consensus 248 G~~~~~l~~~ni~lG~~~~~~~~ 270 (316)
|.+++++..++.++|.-+.....
T Consensus 116 Gv~l~ll~m~~aF~GYvLPwgQm 138 (379)
T 1pp9_C 116 GVILLLTVMATAFMGYVLPWGQM 138 (379)
T ss_dssp HHHHHHHHHHHHHHHHHTTCBHH
T ss_pred hHHHHHHHHHHHheeeeccCcch
Confidence 99999999999999998876543
No 19
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=28.94 E-value=2.4e+02 Score=23.13 Aligned_cols=128 Identities=7% Similarity=-0.000 Sum_probs=67.3
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHHHHHhhccc---c-cCC-cchhhhhHhHHHHHHHHHHHHHHhhhhccccCCC-----
Q 045142 133 LHFKQVHGIINAVSWGFLMPVGAITARYMKVF---Q-SAD-PAWFYAHIICQSSAYLLGIAGAGTGIYLGNKSHG----- 202 (316)
Q Consensus 133 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~---~-~~~-~~wf~~H~~~q~~~~~~~~~g~~l~~~~~~~~~~----- 202 (316)
...+..| ++|++++.+++..|..+. +.+.. . .+. .....+|..+..+-+++.+. .++-+. ....+.
T Consensus 12 ~~~R~~H-W~~a~~ii~l~~tG~~i~-~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~-r~~r~~-r~~~p~~~~~~ 87 (217)
T 1kqf_C 12 FIDRACH-WTVVICFFLVALSGISFF-FPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMF-MFVRFV-HHNIPDKKDIP 87 (217)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHH-CTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHH-HHHHHG-GGSCCCGGGHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHH-chhHHHHHHhccchhHHHHHHHHHHHHHHHHHHH-HHHHHH-HHhCCChhHHH
Confidence 3457788 888889999888887654 21110 0 011 12456887776554433332 111111 100000
Q ss_pred ----------------ccccccchhh----HHHHHHHHHHHHhhhcccCC-CC-----CCccchhhHHHHHHHHHHHHHH
Q 045142 203 ----------------IQHSTHRTIG----ILLLVLGFIQVLALKLRPKK-EH-----KYRIWWNFYHHSVGYAIIILSI 256 (316)
Q Consensus 203 ----------------~~~~~H~~lG----~~~~~l~~~Q~l~~~~rp~~-~~-----~~R~~~~~~H~~~G~~~~~l~~ 256 (316)
.....|...+ +++++++++|++.|++.-.. .. ........+|.+++.+++++.+
T Consensus 88 ~~~~~~~yl~~~~~~~p~~~~~n~~~~~~~~~l~~l~~~~~~TG~~~~~~~~~~~~~~~~~~~~~~iH~~~a~~l~~~v~ 167 (217)
T 1kqf_C 88 WLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAIL 167 (217)
T ss_dssp HHHSHHHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHTCTTTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011232233 56667788898877542111 00 1123457889999998888776
Q ss_pred HHHHHhhc
Q 045142 257 FNIFEGFN 264 (316)
Q Consensus 257 ~ni~lG~~ 264 (316)
+=++..+.
T Consensus 168 ~Hv~~al~ 175 (217)
T 1kqf_C 168 IHMYMAFW 175 (217)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66665543
No 20
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=28.25 E-value=1.7e+02 Score=27.66 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 183 YLLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
++..+.|+.|+..+..+. .|+ ....|..=.-..++++.+-..-++..-.-+.+ +..=+.
T Consensus 56 ~iQilTGifLam~Y~p~~~~Af~Sv~~I~rdV~~GwliR~~H~~gAs~ffi~iylHi~RglyygsY~~P-----r~~~W~ 130 (445)
T 2qjy_A 56 VLQIVTGIVLAMHYTPHVDLAFASVEHIMRNVNGGFMLRYLHANGASLFFIAVYLHIFRGLYYGSYKAP-----REVTWI 130 (445)
T ss_dssp HHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTT-----CHHHHH
T ss_pred HHHHHHHHHHHeeccCCcHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-----ccceee
Confidence 344567988887654321 112 23678776666666777777755543221111 123578
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCC
Q 045142 247 VGYAIIILSIFNIFEGFNILNPLK 270 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~~~~~ 270 (316)
.|.+++++..++.++|.-+.....
T Consensus 131 ~Gv~l~ll~m~taF~GYvLPwgQm 154 (445)
T 2qjy_A 131 VGMLIYLAMMATAFMGYVLPWGQM 154 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCBHH
T ss_pred ehHHHHHHHHHHHHHheeccCCcc
Confidence 999999999999999999886553
No 21
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=25.82 E-value=2.1e+02 Score=26.49 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhhhccccC---------------CCc-cccccchhhHHHHHHHHHHHHhhhcccCCCCCCccchhhHHHH
Q 045142 183 YLLGIAGAGTGIYLGNKS---------------HGI-QHSTHRTIGILLLVLGFIQVLALKLRPKKEHKYRIWWNFYHHS 246 (316)
Q Consensus 183 ~~~~~~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~R~~~~~~H~~ 246 (316)
++..+.|+.++..+..+. .|+ ....|..=.-..++++.+-..-++..-.-+.+ +..=+.
T Consensus 41 ~iqi~TGifLam~Y~p~~~~Af~Sv~~I~~dV~~GwliR~~H~~gAs~ffi~iylHi~Rglyygsy~~P-----r~~~W~ 115 (385)
T 3cx5_C 41 VIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSP-----RVTLWN 115 (385)
T ss_dssp HHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTT-----CHHHHH
T ss_pred HHHHHHHHHHHeeeeCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-----Ccceee
Confidence 334556888887654321 111 13567766666666677666655543211111 123467
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCC
Q 045142 247 VGYAIIILSIFNIFEGFNILNPLK 270 (316)
Q Consensus 247 ~G~~~~~l~~~ni~lG~~~~~~~~ 270 (316)
.|.+++++..++.++|.-+.....
T Consensus 116 ~Gv~l~ll~m~~aF~GYvLPwgQm 139 (385)
T 3cx5_C 116 VGVIIFILTIATAFLGYCCVYGQM 139 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCBHH
T ss_pred ecHHHHHHHHHHHHHhhhccCCcc
Confidence 899999999999999988876543
No 22
>2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A* 3fyi_A* 1m57_A* 3oma_A* 3om3_A* 3omi_A* 3omn_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A*
Probab=24.55 E-value=4.9e+02 Score=25.28 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 045142 141 IINAVSWGFLMPVGAITARYMK 162 (316)
Q Consensus 141 ~lm~~aw~~l~p~gil~aR~~k 162 (316)
..+....++.+|.++-+.-..-
T Consensus 347 ~f~~~TmiiavPtgikvFnwl~ 368 (566)
T 2gsm_A 347 YFMMATMVIAVPTGIKIFSWIA 368 (566)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556777898886654433
No 23
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=22.47 E-value=86 Score=18.60 Aligned_cols=9 Identities=0% Similarity=-0.119 Sum_probs=3.7
Q ss_pred HHHHHhhcc
Q 045142 295 RVMVIRQRR 303 (316)
Q Consensus 295 ~~~~~~~~~ 303 (316)
.+-.+||+|
T Consensus 21 iRPQ~Kr~K 29 (37)
T 2rdd_B 21 LRPQQKRTK 29 (37)
T ss_dssp HHHHHHHHH
T ss_pred hhhHHHHHH
Confidence 344444433
No 24
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=22.04 E-value=84 Score=18.59 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=14.3
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHH
Q 045142 136 KQVHGIINAVSWGFLMPVGAITAR 159 (316)
Q Consensus 136 ~~~Hg~lm~~aw~~l~p~gil~aR 159 (316)
.-.=|.++.++|...+ +.++.|
T Consensus 12 V~ilg~~I~i~W~~vf--~lFl~R 33 (34)
T 3s8f_C 12 ILVLTLTILVFWLGVY--AVFFAR 33 (34)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHT
T ss_pred HHHHHHHHHHHHHHHH--eeeecC
Confidence 3445777888887776 555544
No 25
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=21.77 E-value=6.1e+02 Score=25.34 Aligned_cols=14 Identities=21% Similarity=0.067 Sum_probs=6.9
Q ss_pred cccchhhHHHHHHH
Q 045142 206 STHRTIGILLLVLG 219 (316)
Q Consensus 206 ~~H~~lG~~~~~l~ 219 (316)
+.-..+|+++++-+
T Consensus 620 ~~~~i~~~l~liGi 633 (741)
T 3aqp_A 620 SIPTIAALLTIVGY 633 (741)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 34446666554333
No 26
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=21.39 E-value=71 Score=17.79 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 045142 140 GIINAVSWGFLMPVGA 155 (316)
Q Consensus 140 g~lm~~aw~~l~p~gi 155 (316)
..-|..+|++|+-.|+
T Consensus 10 ~aa~wF~WGvllnsgi 25 (27)
T 2nr1_A 10 SSAMWFSWGVLLNSGI 25 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHhheeccc
Confidence 3568889999988776
No 27
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=21.26 E-value=4.5e+02 Score=27.23 Aligned_cols=13 Identities=23% Similarity=0.079 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHH
Q 045142 284 GAIAAILEVVTRV 296 (316)
Q Consensus 284 ~~~~~~lev~~~~ 296 (316)
+++.++.|+.+|.
T Consensus 865 ~~~~~~~e~~k~~ 877 (920)
T 1mhs_A 865 FGIFCIMGGVYYI 877 (920)
T ss_dssp THHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 3445678888853
No 28
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=20.23 E-value=1.7e+02 Score=27.12 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 045142 245 HSVGYAIIILSIFNIF 260 (316)
Q Consensus 245 ~~~G~~~~~l~~~ni~ 260 (316)
.....+.++.....++
T Consensus 413 ~~~~~~~~~~~~~~~~ 428 (511)
T 4djk_A 413 LVVAIVGLLTSIMAFI 428 (511)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444434443
No 29
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=20.01 E-value=1.6e+02 Score=22.93 Aligned_cols=33 Identities=3% Similarity=0.056 Sum_probs=18.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045142 270 KIWRLVYACILVALGAIAAILEVVTRVMVIRQR 302 (316)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~lev~~~~~~~~~~ 302 (316)
....+.|+.++..+..++++--+..+.+.+|+.
T Consensus 49 ~~~~ylYIL~vmgffgff~~GImLsYiRSKk~E 81 (138)
T 2k21_A 49 GKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLE 81 (138)
T ss_dssp CSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCceeehHHHHHHHHHHHHHHHHHHHhHhhhcc
Confidence 345567777776665554443344455554443
Done!