BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045143
         (267 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CKL|A Chain A, Crystal Structure Of Human Cytosolic Sulfotransferase
           Sult1b1 In Complex With Pap And Resveratrol
 pdb|3CKL|B Chain B, Crystal Structure Of Human Cytosolic Sulfotransferase
           Sult1b1 In Complex With Pap And Resveratrol
          Length = 298

 Score = 30.8 bits (68), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 42  FERSKRSLKKALSHPA-----DPVDENPQSELEKVKRSLRKVNNHLVENSAFVQSEFEIE 96
           F   K   KK   HP      + + ENP+ E++K+ R L K  N  + +     + FE+ 
Sbjct: 176 FTHVKNWWKKKEEHPILFLYYEDMKENPKEEIKKIIRFLEKNLNDEILDRIIHHTSFEVM 235

Query: 97  KKNHSLD--KLPTSSVCH 112
           K N  ++   LPT+ + H
Sbjct: 236 KDNPLVNYTHLPTTVMDH 253


>pdb|4H63|V Chain V, Structure Of The Schizosaccharomyces Pombe Mediator Head
           Module
          Length = 135

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 59  PVDENPQSELEKVKRSLRKVNNHLVENSAF 88
           P  +  + +LEKVKR+L K+ NHL+E S  
Sbjct: 90  PTVDYSEPDLEKVKRTLTKLQNHLLEVSLI 119


>pdb|2Z5F|A Chain A, Human Sulfotransferase Sult1b1 In Complex With Pap
 pdb|2Z5F|B Chain B, Human Sulfotransferase Sult1b1 In Complex With Pap
          Length = 298

 Score = 29.6 bits (65), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 42  FERSKRSLKKALSHPA-----DPVDENPQSELEKVKRSLRKVNNHLVENSAFVQSEFEIE 96
           F   K   K+   HP      + + ENP+ E++K+ R L K  N  + +     + FE+ 
Sbjct: 176 FTHVKNWWKRKEEHPILFLYYEDMKENPKEEIKKIIRFLEKNLNDEILDRIIHHTSFEVM 235

Query: 97  KKNHSLD--KLPTSSVCH 112
           K N  ++   LPT+ + H
Sbjct: 236 KDNPLVNYTHLPTTVMDH 253


>pdb|1V7M|H Chain H, Human Thrombopoietin Functional Domain Complexed To
          Neutralizing Antibody Tn1 Fab
 pdb|1V7M|I Chain I, Human Thrombopoietin Functional Domain Complexed To
          Neutralizing Antibody Tn1 Fab
 pdb|1V7N|H Chain H, Human Thrombopoietin Functional Domain Complexed To
          Neutralizing Antibody Tn1 Fab
 pdb|1V7N|I Chain I, Human Thrombopoietin Functional Domain Complexed To
          Neutralizing Antibody Tn1 Fab
 pdb|1V7N|J Chain J, Human Thrombopoietin Functional Domain Complexed To
          Neutralizing Antibody Tn1 Fab
 pdb|1V7N|K Chain K, Human Thrombopoietin Functional Domain Complexed To
          Neutralizing Antibody Tn1 Fab
 pdb|2ZKH|H Chain H, Human Thrombopoietin Neutralizing Antibody Tn1 Fab
          Length = 217

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 58 DPVDENPQSELEKVKRSLRKVNNHLVENSAFVQSEFEIEKKN 99
          D V ++P+  LE V     KVNNH +  +  V+  F + + +
Sbjct: 35 DWVRQSPEKGLEWVAEIRSKVNNHAIHYAESVKGRFTVSRDD 76


>pdb|3HKF|A Chain A, Murine Unglycosylated Igg Fc Fragment
          Length = 214

 Score = 27.3 bits (59), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 84  ENSAFVQSEFEIEKKNHSLDKLPTSSVCHEGL-----ERSLRNS 122
           + S FV S+  ++K N       T SV HEGL     E+SL +S
Sbjct: 167 DGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLHNHHTEKSLSHS 210


>pdb|1IGY|B Chain B, Structure Of Immunoglobulin
 pdb|1IGY|D Chain D, Structure Of Immunoglobulin
          Length = 434

 Score = 27.3 bits (59), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 84  ENSAFVQSEFEIEKKNHSLDKLPTSSVCHEGLE 116
           + S FV S+  ++K N       T SV HEGL 
Sbjct: 392 DGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 424


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.305    0.122    0.332 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,181,550
Number of Sequences: 62578
Number of extensions: 262338
Number of successful extensions: 485
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 474
Number of HSP's gapped (non-prelim): 17
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 50 (23.9 bits)