Query 045143
Match_columns 267
No_of_seqs 119 out of 129
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 10:15:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.5 2.2E-14 4.8E-19 115.2 5.3 43 222-264 34-79 (102)
2 PF04822 Takusan: Takusan; In 8.4 59 0.0013 25.9 -1.8 35 50-84 2-37 (84)
3 PF10930 DUF2737: Protein of u 7.9 1.7E+02 0.0037 21.8 0.6 13 253-265 29-41 (54)
4 COG1558 FlgC Flagellar basal b 5.4 2.9E+02 0.0063 24.1 0.8 15 15-29 76-90 (137)
5 PF04686 SsgA: Streptomyces sp 4.6 2.6E+02 0.0056 22.8 -0.1 16 14-29 2-17 (100)
6 PRK00807 50S ribosomal protein 3.9 3.7E+02 0.008 19.3 0.3 10 44-53 39-48 (52)
7 PTZ00269 variant surface glyco 3.5 8.7E+02 0.019 24.9 2.7 24 31-54 394-417 (472)
8 KOG1741 Mitochondrial/chloropl 2.9 4.9E+02 0.011 21.8 0.1 23 221-246 52-74 (103)
9 PRK14891 50S ribosomal protein 2.7 5.6E+02 0.012 22.3 0.3 12 43-54 41-52 (131)
10 cd00472 Ribosomal_L24e_L24 Rib 2.7 6E+02 0.013 18.6 0.4 9 44-52 41-49 (54)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.50 E-value=2.2e-14 Score=115.16 Aligned_cols=43 Identities=47% Similarity=0.408 Sum_probs=38.3
Q ss_pred CchhhhhcccccchhcccCCCCCCCCcc---CCCCCCccccCCCCC
Q 045143 222 LPSYIAATESAKGKLRLQGSSRSSEDGV---EKNSGTGCHSRFFSP 264 (267)
Q Consensus 222 ~PsyMa~T~Sakak~r~~~spr~~~~~~---e~~~~~rR~Slp~~~ 264 (267)
+|+|||+|||||||+|+|++||+++++. ++....+|+|||...
T Consensus 34 ~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~ 79 (102)
T PF13178_consen 34 LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSS 79 (102)
T ss_pred CCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCCCC
Confidence 9999999999999999999999999874 456678999999654
No 2
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=8.38 E-value=59 Score=25.89 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=23.3
Q ss_pred cccCCCCCCCCCCCCc-hhhhhhccccccccCcCcc
Q 045143 50 KKALSHPADPVDENPQ-SELEKVKRSLRKVNNHLVE 84 (267)
Q Consensus 50 RK~ss~~~ds~~e~pq-~ElEKvKRnlRKvsn~~~e 84 (267)
||.||.+..-...... .++|+.++-|+++++--.|
T Consensus 2 rktSS~~~~ls~~e~~~k~lE~L~~eL~~it~ERnE 37 (84)
T PF04822_consen 2 RKTSSPPPNLSKKEKKMKELERLKFELQKITKERNE 37 (84)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777743332333 6899999999888774444
No 3
>PF10930 DUF2737: Protein of unknown function (DUF2737); InterPro: IPR020295 The proteins in this entry are uncharacterised.
Probab=7.91 E-value=1.7e+02 Score=21.82 Aligned_cols=13 Identities=8% Similarity=-0.411 Sum_probs=10.3
Q ss_pred CCCccccCCCCCC
Q 045143 253 SGTGCHSRFFSPS 265 (267)
Q Consensus 253 ~~~rR~Slp~~~~ 265 (267)
.-.+|+|||+++.
T Consensus 29 ELlkRnSFpsvn~ 41 (54)
T PF10930_consen 29 ELLKRNSFPSVNN 41 (54)
T ss_pred HHHhhcCCCCCch
Confidence 4568999999874
No 4
>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion]
Probab=5.42 E-value=2.9e+02 Score=24.11 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=12.9
Q ss_pred ccccccCCCCCCCCC
Q 045143 15 SLQLQYDSVEPNSVS 29 (267)
Q Consensus 15 pL~Lqyd~~dPNS~~ 29 (267)
|+.|.||++.|+-.-
T Consensus 76 ~~~~~YdP~hP~Ad~ 90 (137)
T COG1558 76 PFKLVYDPGHPDADA 90 (137)
T ss_pred CceeeeCCCCCCccc
Confidence 789999999998764
No 5
>PF04686 SsgA: Streptomyces sporulation and cell division protein, SsgA; InterPro: IPR006776 The precise function of SsgA is unknown. It is an acidic, cytosolic protein which has been found to be essential for spore formation, and to stimulate cell division in Streptomyces coelicolor [].; PDB: 3CM1_C.
Probab=4.55 E-value=2.6e+02 Score=22.83 Aligned_cols=16 Identities=31% Similarity=0.713 Sum_probs=11.3
Q ss_pred cccccccCCCCCCCCC
Q 045143 14 LSLQLQYDSVEPNSVS 29 (267)
Q Consensus 14 ~pL~Lqyd~~dPNS~~ 29 (267)
+|..|.||+.||--+.
T Consensus 2 V~a~L~Yd~~DP~AV~ 17 (100)
T PF04686_consen 2 VPARLRYDPADPYAVR 17 (100)
T ss_dssp EEEEEEEETTSTTEEE
T ss_pred ccEEEEEcCCCCEEEE
Confidence 4667888888886553
No 6
>PRK00807 50S ribosomal protein L24e; Validated
Probab=3.91 E-value=3.7e+02 Score=19.32 Aligned_cols=10 Identities=20% Similarity=0.119 Sum_probs=8.0
Q ss_pred cccccccccC
Q 045143 44 RSKRSLKKAL 53 (267)
Q Consensus 44 KpKRn~RK~s 53 (267)
+.||||||+.
T Consensus 39 ~~~~nprk~~ 48 (52)
T PRK00807 39 KLGRVPRKLK 48 (52)
T ss_pred HccCCCCccc
Confidence 6789999874
No 7
>PTZ00269 variant surface glycoprotein; Provisional
Probab=3.54 E-value=8.7e+02 Score=24.92 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=15.3
Q ss_pred CCCCcccCCcccccccccccccCC
Q 045143 31 TDSITVHSTPKFERSKRSLKKALS 54 (267)
Q Consensus 31 ~ds~s~qs~~E~eKpKRn~RK~ss 54 (267)
..+.++|+++-.+..||..||.-+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~ 417 (472)
T PTZ00269 394 DPSDPTQSTTHTNEKKRSVRKPIS 417 (472)
T ss_pred CCCCCcccccccchhhhhccCCcc
Confidence 344557777777777777777543
No 8
>KOG1741 consensus Mitochondrial/chloroplast ribosomal protein S14/S29 [Translation, ribosomal structure and biogenesis]
Probab=2.90 E-value=4.9e+02 Score=21.78 Aligned_cols=23 Identities=30% Similarity=0.192 Sum_probs=14.3
Q ss_pred CCchhhhhcccccchhcccCCCCCCC
Q 045143 221 SLPSYIAATESAKGKLRLQGSSRSSE 246 (267)
Q Consensus 221 ~~PsyMa~T~Sakak~r~~~spr~~~ 246 (267)
++|.||+||. -+=|-+.+-|+|.
T Consensus 52 alPrns~ptr---I~NRCv~TGR~R~ 74 (103)
T KOG1741|consen 52 ALPRNSAPTR---IKNRCVFTGRPRG 74 (103)
T ss_pred cCccccchHH---HHHHHHhcCCccc
Confidence 6799999873 3444455555553
No 9
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=2.74 E-value=5.6e+02 Score=22.28 Aligned_cols=12 Identities=8% Similarity=-0.180 Sum_probs=8.1
Q ss_pred ccccccccccCC
Q 045143 43 ERSKRSLKKALS 54 (267)
Q Consensus 43 eKpKRn~RK~ss 54 (267)
-+.||||||+.=
T Consensus 41 f~~kRnPRKlkW 52 (131)
T PRK14891 41 YDLGREARDLEW 52 (131)
T ss_pred HHccCCCccchh
Confidence 357788888753
No 10
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=2.67 E-value=6e+02 Score=18.60 Aligned_cols=9 Identities=33% Similarity=0.327 Sum_probs=6.8
Q ss_pred ccccccccc
Q 045143 44 RSKRSLKKA 52 (267)
Q Consensus 44 KpKRn~RK~ 52 (267)
+-||||||+
T Consensus 41 ~~krnPRkv 49 (54)
T cd00472 41 LRKRNPRKL 49 (54)
T ss_pred HCcCCCCcc
Confidence 358888886
Done!