Query 045143
Match_columns 267
No_of_seqs 119 out of 129
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 18:02:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cm1_A SSGA-like sporulation-s 5.7 1.5E+02 0.0051 24.4 0.4 25 5-29 16-42 (139)
2 3jyw_S 60S ribosomal protein L 5.5 1.7E+02 0.0058 19.8 0.6 10 44-53 34-43 (45)
3 1vq8_U 50S ribosomal protein L 3.6 2.6E+02 0.0089 20.3 0.3 10 44-53 41-50 (66)
4 2rfe_E ERBB receptor feedback 3.1 2.8E+02 0.0095 18.6 0.1 12 221-232 13-28 (40)
5 3j21_V 50S ribosomal protein L 3.0 3.2E+02 0.011 19.8 0.3 10 44-53 42-51 (66)
6 1v18_B APC protein, adenomatou 2.4 6.3E+02 0.022 17.3 1.2 16 7-22 21-36 (47)
7 2pyq_A Uncharacterized protein 2.2 4.6E+02 0.016 21.1 0.3 20 60-79 48-67 (114)
8 2lyc_A Spindle and kinetochore 2.1 5.2E+02 0.018 20.9 0.5 7 220-226 16-22 (130)
9 2rf9_C ERBB receptor feedback 1.6 6E+02 0.02 18.6 0.1 12 221-232 28-43 (65)
10 3fpq_A Serine/threonine-protei 1.5 8.5E+02 0.029 21.0 0.8 24 205-228 176-199 (290)
No 1
>3cm1_A SSGA-like sporulation-specific cell division PROT; YP_290167.1; 2.60A {Thermobifida fusca}
Probab=5.66 E-value=1.5e+02 Score=24.38 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=18.8
Q ss_pred cccccCCc--ccccccccCCCCCCCCC
Q 045143 5 VFLASSPI--VLSLQLQYDSVEPNSVS 29 (267)
Q Consensus 5 KLLASSp~--v~pL~Lqyd~~dPNS~~ 29 (267)
.|+++.+. .+|..|.||+.||.-+.
T Consensus 16 ~lv~~~~~~~~Vpa~L~Yd~~DP~AV~ 42 (139)
T 3cm1_A 16 QLIVPDRAPVPLVARLDYSVDDPYAIR 42 (139)
T ss_dssp EEECTTSCCEEEEEEEEEETTSTTEEE
T ss_pred EEEcCCCCceEEEEEEEecCCCCEEEE
Confidence 45666655 56778999999998774
No 2
>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=5.51 E-value=1.7e+02 Score=19.79 Aligned_cols=10 Identities=0% Similarity=0.345 Sum_probs=7.8
Q ss_pred cccccccccC
Q 045143 44 RSKRSLKKAL 53 (267)
Q Consensus 44 KpKRn~RK~s 53 (267)
+.||||||+.
T Consensus 34 ~~krnPrkl~ 43 (45)
T 3jyw_S 34 KQRKNPRRIA 43 (45)
T ss_dssp TSCCCTTTCC
T ss_pred HcCCCCccCc
Confidence 6789999863
No 3
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=3.60 E-value=2.6e+02 Score=20.31 Aligned_cols=10 Identities=10% Similarity=-0.007 Sum_probs=8.1
Q ss_pred cccccccccC
Q 045143 44 RSKRSLKKAL 53 (267)
Q Consensus 44 KpKRn~RK~s 53 (267)
+.||||||+.
T Consensus 41 ~~krnPRkl~ 50 (66)
T 1vq8_U 41 DLGREARNLE 50 (66)
T ss_dssp HTTCCGGGCT
T ss_pred HcccCcccch
Confidence 6788888875
No 4
>2rfe_E ERBB receptor feedback inhibitor 1; kinase domain, inhibition, dimer, peptide, alternative splicing, anti-oncogene, ATP-binding, cell cycle; 2.90A {Homo sapiens} PDB: 2rfd_C
Probab=3.14 E-value=2.8e+02 Score=18.63 Aligned_cols=12 Identities=58% Similarity=0.861 Sum_probs=7.8
Q ss_pred CCchh----hhhcccc
Q 045143 221 SLPSY----IAATESA 232 (267)
Q Consensus 221 ~~Psy----Ma~T~Sa 232 (267)
.+|+| |.+|+|-
T Consensus 13 ~lp~y~s~~mp~TqSf 28 (40)
T 2rfe_E 13 SLPSYLNGVMPPTQSF 28 (40)
T ss_dssp CCCCCTTSCCCSCEEC
T ss_pred cCccccccccCccccc
Confidence 46766 7777763
No 5
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=3.02 E-value=3.2e+02 Score=19.84 Aligned_cols=10 Identities=20% Similarity=0.009 Sum_probs=7.6
Q ss_pred cccccccccC
Q 045143 44 RSKRSLKKAL 53 (267)
Q Consensus 44 KpKRn~RK~s 53 (267)
+.||||||+.
T Consensus 42 ~~krnPRkl~ 51 (66)
T 3j21_V 42 FMGRNPRKLK 51 (66)
T ss_dssp HTTCCTTTCS
T ss_pred HcCCCcccch
Confidence 5788888864
No 6
>1v18_B APC protein, adenomatous polyposis coli; signaling protein, signalling complex, WNT signal, beta-catenin degradation complex, cell adhesion; HET: SEP; 2.1A {Homo sapiens}
Probab=2.39 E-value=6.3e+02 Score=17.31 Aligned_cols=16 Identities=31% Similarity=0.202 Sum_probs=9.6
Q ss_pred cccCCcccccccccCC
Q 045143 7 LASSPIVLSLQLQYDS 22 (267)
Q Consensus 7 LASSp~v~pL~Lqyd~ 22 (267)
-|||-.++|||=.|-.
T Consensus 21 caSSLSAL~l~E~yiq 36 (47)
T 1v18_B 21 CSSSLSALSLDEPFIQ 36 (47)
T ss_dssp ----CCCCCCSSCCCC
T ss_pred chhccccccccchhhh
Confidence 4789999999977753
No 7
>2pyq_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.50A {Jannaschia SP} SCOP: a.279.1.1
Probab=2.20 E-value=4.6e+02 Score=21.07 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=14.7
Q ss_pred CCCCCchhhhhhcccccccc
Q 045143 60 VDENPQSELEKVKRSLRKVN 79 (267)
Q Consensus 60 ~~e~pq~ElEKvKRnlRKvs 79 (267)
|....+.|||.||.|+=.--
T Consensus 48 Vs~SD~~ELerVk~nfl~KK 67 (114)
T 2pyq_A 48 VAGSDTAELETIKKNFLMKK 67 (114)
T ss_dssp CCTTCHHHHHHHHHHTTTTT
T ss_pred hccCCHHHHHHHHHhHHHHH
Confidence 44567899999998865433
No 8
>2lyc_A Spindle and kinetochore-associated protein 1 HOMO; SKA1, microtubule, SKA1-MTBD, protein binding; NMR {Caenorhabditis elegans}
Probab=2.10 E-value=5.2e+02 Score=20.90 Aligned_cols=7 Identities=29% Similarity=0.823 Sum_probs=5.5
Q ss_pred CCCchhh
Q 045143 220 PSLPSYI 226 (267)
Q Consensus 220 ~~~PsyM 226 (267)
.+||+||
T Consensus 16 ~sIPkYm 22 (130)
T 2lyc_A 16 KTIPKYQ 22 (130)
T ss_dssp TTSCHHH
T ss_pred hccCHHH
Confidence 3689997
No 9
>2rf9_C ERBB receptor feedback inhibitor 1; kinase domain, inhibition, dimer, peptide, alternative splicing, anti-oncogene, ATP-binding, cell cycle; 3.50A {Homo sapiens}
Probab=1.64 E-value=6e+02 Score=18.57 Aligned_cols=12 Identities=58% Similarity=0.861 Sum_probs=8.3
Q ss_pred CCchh----hhhcccc
Q 045143 221 SLPSY----IAATESA 232 (267)
Q Consensus 221 ~~Psy----Ma~T~Sa 232 (267)
.||+| |.+|+|-
T Consensus 28 slp~y~~~~mp~TqSF 43 (65)
T 2rf9_C 28 SLPSYLNGVMPPTQSF 43 (65)
T ss_dssp CCCCCTTSCCCSCEEC
T ss_pred cccccccccccccccc
Confidence 46666 8888874
No 10
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=1.47 E-value=8.5e+02 Score=21.04 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=0.0
Q ss_pred cccccccccccCCCCCCCchhhhh
Q 045143 205 VLTKKKCAENELQSSPSLPSYIAA 228 (267)
Q Consensus 205 ~~~~~~~~d~~~~ss~~~PsyMa~ 228 (267)
||...........+.-.-|.||||
T Consensus 176 FGla~~~~~~~~~~~~GTp~YmAP 199 (290)
T 3fpq_A 176 LGLATLKRASFAKAVIGTPEFMAP 199 (290)
T ss_dssp TTGGGGCCTTSBEESCSSCCCCCG
T ss_pred CcCCEeCCCCccCCcccCccccCH
Done!