BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045145
         (270 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IZ3|B Chain B, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
 pdb|3IZ3|C Chain C, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
 pdb|3J17|B Chain B, Structure Of A Transcribing Cypovirus By Cryo-Electron
            Microscopy
 pdb|3J17|C Chain C, Structure Of A Transcribing Cypovirus By Cryo-Electron
            Microscopy
          Length = 1333

 Score = 30.0 bits (66), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 124  EGVPTAVSHGRWL-NIPDYDAPTQLVKPRERNSRYVDA--VMTIPKGSLFPMCAMN 176
            + +  +V    W+ +I D +   +++ P E  +++VDA  +MT PKG LF +  M+
Sbjct: 1153 DNIIASVIKSNWVVDIHDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQFMD 1208


>pdb|2J66|A Chain A, Structural Characterisation Of Btrk Decarboxylase From
           Butirosin Biosynthesis
          Length = 428

 Score = 29.6 bits (65), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 210 RVKVVCDHLNLGVKTGLPYVWHNKA 234
           R  +VC+ +NLG   G+PY  H KA
Sbjct: 215 RYGIVCECINLGGGFGVPYFSHEKA 239


>pdb|3CNF|A Chain A, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus By
            Cryo-Electron Microscopy
 pdb|3CNF|B Chain B, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus By
            Cryo-Electron Microscopy
 pdb|3IZX|B Chain B, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
            Virus
 pdb|3IZX|C Chain C, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
            Virus
          Length = 1333

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 124  EGVPTAVSHGRWL-NIPDYDAPTQLVKPRERNSRYVDA--VMTIPKGSLFPMCAMN 176
            + +  +V    W+ +I D +   +++ P E  +++VDA  +MT PKG LF +  M+
Sbjct: 1153 DNIIASVIKSNWVVDILDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQFMD 1208


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.142    0.462 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,043,536
Number of Sequences: 62578
Number of extensions: 395443
Number of successful extensions: 615
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 5
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)