BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045147
         (113 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin
          Length = 1056

 Score = 32.0 bits (71), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 4   ASDQPESASASQIVFTSTMSYYYAGCADYQ-EPHFLDSCFLCRKP-------LGYNSDIF 55
           AS+Q  SA A+QIV  ST+S   A           L++ F+  +P       LGY S +F
Sbjct: 366 ASEQLTSAEATQIV-ASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVF 424

Query: 56  MYRGNTPFCSKECRQ 70
            Y  NT  C  E  Q
Sbjct: 425 RYCANTVSCPDELLQ 439


>pdb|3MUQ|A Chain A, The Crystal Structure Of A Conserved Functionally
          Unknown Pr Vibrio Parahaemolyticus Rimd 2210633
 pdb|3MUQ|B Chain B, The Crystal Structure Of A Conserved Functionally
          Unknown Pr Vibrio Parahaemolyticus Rimd 2210633
          Length = 237

 Score = 26.2 bits (56), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 7/46 (15%)

Query: 10 SASASQIVFTSTMSYYYAGCADYQEPHFLDSCFLCRKPLGYNSDIF 55
          S +A  +   +T S Y++G  DY  P F        K  GY  D+ 
Sbjct: 1  SNAAEHVRLATTTSTYHSGLLDYLLPQF-------EKDTGYKVDVI 39


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.130    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,615,412
Number of Sequences: 62578
Number of extensions: 74839
Number of successful extensions: 127
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 2
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)