BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045147
         (113 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q91062|VIT_ICHUN Vitellogenin OS=Ichthyomyzon unicuspus PE=1 SV=1
          Length = 1823

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 11/76 (14%)

Query: 4   ASDQPESASASQIVFTSTMSYYYAG--CADYQEPHFLDSCFLCRKP-------LGYNSDI 54
           AS+Q  SA A+QIV+ ST+S   A      Y     L + F+  +P       LGY S +
Sbjct: 382 ASEQLTSAEATQIVY-STLSNQQATRESLSYAR-ELLHTSFIRNRPILRKTAVLGYGSLV 439

Query: 55  FMYRGNTPFCSKECRQ 70
           F Y  NT  C  E  Q
Sbjct: 440 FRYCANTVSCPDELLQ 455


>sp|Q30YL0|SYL_DESDG Leucine--tRNA ligase OS=Desulfovibrio desulfuricans (strain G20)
           GN=leuS PE=3 SV=1
          Length = 829

 Score = 30.4 bits (67), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 45  RKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKERSWKKSSSSSARKSES 96
           R PLG   + +  R   P C ++ R+E   MD   E SW  +  +SA  +E+
Sbjct: 468 RSPLGETPEFYECR--CPACGEKARRETDTMDTFVESSWYFARYTSAGDNEA 517


>sp|Q5E450|MNMC_VIBF1 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
           protein MnmC OS=Vibrio fischeri (strain ATCC 700601 /
           ES114) GN=mnmC PE=3 SV=1
          Length = 680

 Score = 29.6 bits (65), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 36  HFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKERSWKKSSSSSARKSE 95
           H+    +LC K L     +F +  N P  +  C  E I + + +E+ W  S+ S+A + +
Sbjct: 408 HYSLGGWLCPKQL--TRGLFEHLSNNPLFTLHCDSEIIALTQNEEQQWLLSTDSNAYQHQ 465

Query: 96  S 96
           +
Sbjct: 466 A 466


>sp|Q8SWN5|MED6_ENCCU Mediator of RNA polymerase II transcription subunit 6
          OS=Encephalitozoon cuniculi (strain GB-M1) GN=MED6 PE=3
          SV=1
          Length = 177

 Score = 29.6 bits (65), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 37 FLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEM 75
          F+D  FL  KPL  ++++  Y   +PF  K C  E ++M
Sbjct: 10 FVDQRFLGSKPLD-DTNVLEYFSGSPFYDKSCNNEILKM 47


>sp|Q03027|APRF_PSEAE Alkaline protease secretion protein AprF OS=Pseudomonas aeruginosa
           (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
           GN=aprF PE=3 SV=1
          Length = 481

 Score = 28.9 bits (63), Expect = 9.9,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 70  QEQIEMDEAKERSWKKSSSSSARKSESNNSTPSKTVRT 107
           Q+QIE+  A++RS+++    + R+ E  N T + T+ T
Sbjct: 152 QDQIELARAQKRSYREQFQLNQRQFERGNGTRTDTLET 189


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.123    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,043,651
Number of Sequences: 539616
Number of extensions: 1319461
Number of successful extensions: 4145
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4124
Number of HSP's gapped (non-prelim): 26
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)