Query 045147
Match_columns 113
No_of_seqs 102 out of 245
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 18:07:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2das_A Zinc finger MYM-type pr 91.3 0.14 4.8E-06 33.4 2.8 37 34-70 16-53 (62)
2 2iyb_E Testin, TESS, TES; LIM 90.4 0.15 5.3E-06 30.8 2.2 29 40-70 34-62 (65)
3 2l8e_A Polyhomeotic-like prote 89.2 0.089 3E-06 32.5 0.4 31 38-72 18-48 (49)
4 1lv3_A Hypothetical protein YA 87.5 0.24 8.1E-06 32.6 1.6 37 38-80 9-45 (68)
5 1wig_A KIAA1808 protein; LIM d 78.3 1.2 4.1E-05 27.5 2.1 28 40-69 33-60 (73)
6 1x61_A Thyroid receptor intera 75.9 3.3 0.00011 24.8 3.6 29 40-71 35-63 (72)
7 2l3k_A Rhombotin-2, linker, LI 75.4 3.1 0.00011 27.9 3.7 30 40-71 38-67 (123)
8 2xqn_T Testin, TESS; metal-bin 74.4 2.1 7E-05 28.5 2.6 28 40-69 95-122 (126)
9 2cur_A Skeletal muscle LIM-pro 73.8 3.6 0.00012 24.5 3.4 28 40-70 33-60 (69)
10 1jjd_A Metallothionein, SMTA; 72.6 2.5 8.4E-05 26.6 2.4 32 39-72 8-39 (55)
11 3j21_V 50S ribosomal protein L 71.4 4.7 0.00016 26.1 3.7 35 38-72 4-41 (66)
12 2cuq_A Four and A half LIM dom 67.2 5.7 0.00019 24.2 3.3 27 40-69 43-69 (80)
13 4a17_T RPL24, 60S ribosomal pr 66.9 4.5 0.00015 30.3 3.2 36 38-73 5-43 (158)
14 2d8x_A Protein pinch; LIM doma 66.3 3 0.0001 25.0 1.8 28 40-70 33-60 (70)
15 1v6g_A Actin binding LIM prote 65.1 3.5 0.00012 25.4 2.0 27 40-68 43-69 (81)
16 2cu8_A Cysteine-rich protein 2 64.6 5.4 0.00019 24.2 2.8 29 40-70 38-66 (76)
17 3izc_Z 60S ribosomal protein R 63.9 6.2 0.00021 29.4 3.5 48 39-86 4-54 (155)
18 2jtn_A LIM domain-binding prot 63.1 4.9 0.00017 28.6 2.7 30 40-70 149-178 (182)
19 1x4l_A Skeletal muscle LIM-pro 62.7 4.8 0.00017 24.1 2.3 26 40-68 37-62 (72)
20 1iml_A CRIP, cysteine rich int 62.5 6 0.00021 24.0 2.7 29 40-70 29-57 (76)
21 3iz5_Z 60S ribosomal protein L 62.4 6.8 0.00023 29.5 3.4 36 39-74 6-44 (162)
22 3f6q_B LIM and senescent cell 62.1 2.5 8.5E-05 25.0 0.8 27 40-69 41-67 (72)
23 2egq_A FHL1 protein; LIM domai 60.5 5.6 0.00019 24.0 2.3 27 40-69 48-74 (77)
24 1x4k_A Skeletal muscle LIM-pro 59.8 4.8 0.00016 24.0 1.9 27 40-69 35-61 (72)
25 2zkr_u 60S ribosomal protein L 59.0 8.2 0.00028 28.8 3.4 35 38-72 3-40 (157)
26 1nyp_A Pinch protein; LIM doma 58.2 5 0.00017 23.6 1.7 24 40-65 33-56 (66)
27 1vq8_U 50S ribosomal protein L 58.1 10 0.00034 24.5 3.3 35 38-72 3-40 (66)
28 1a7i_A QCRP2 (LIM1); LIM domai 57.6 5.4 0.00018 24.5 1.9 27 40-69 36-62 (81)
29 2xjy_A Rhombotin-2; oncoprotei 57.3 6.1 0.00021 26.2 2.2 26 40-65 31-56 (131)
30 1x6a_A LIMK-2, LIM domain kina 57.1 6.6 0.00023 24.0 2.2 29 40-70 43-72 (81)
31 1x63_A Skeletal muscle LIM-pro 56.8 5.7 0.0002 24.3 1.9 27 40-69 45-71 (82)
32 1x3h_A Leupaxin; paxillin fami 56.2 6.8 0.00023 23.8 2.2 24 40-65 43-66 (80)
33 2d8z_A Four and A half LIM dom 55.4 7.7 0.00026 23.0 2.3 27 40-69 33-59 (70)
34 1x68_A FHL5 protein; four-and- 55.0 6.7 0.00023 23.9 2.0 24 40-65 37-60 (76)
35 2dj7_A Actin-binding LIM prote 54.4 6 0.00021 24.7 1.7 24 40-66 44-67 (80)
36 2dar_A PDZ and LIM domain prot 53.9 8.5 0.00029 24.2 2.4 28 40-70 53-80 (90)
37 1x64_A Alpha-actinin-2 associa 52.9 7.2 0.00025 24.5 1.9 27 40-69 53-79 (89)
38 1g47_A Pinch protein; LIM doma 52.9 4.4 0.00015 24.4 0.9 24 40-65 41-64 (77)
39 2xjy_A Rhombotin-2; oncoprotei 52.9 7.7 0.00026 25.7 2.2 29 40-70 96-124 (131)
40 2co8_A NEDD9 interacting prote 51.9 8.6 0.00029 24.0 2.2 26 40-66 44-70 (82)
41 1j2o_A FLIN2, fusion of rhombo 51.6 7.5 0.00026 25.7 1.9 26 40-65 32-57 (114)
42 1m3v_A FLIN4, fusion of the LI 51.3 5.6 0.00019 26.6 1.3 29 40-69 34-62 (122)
43 1wyh_A SLIM 2, skeletal muscle 51.1 8.3 0.00029 22.9 1.9 27 40-69 35-61 (72)
44 1x62_A C-terminal LIM domain p 50.5 4.7 0.00016 24.8 0.7 28 40-70 43-70 (79)
45 2l4z_A DNA endonuclease RBBP8, 50.0 5.5 0.00019 27.1 1.1 27 40-66 90-116 (123)
46 2ehe_A Four and A half LIM dom 49.1 9.3 0.00032 23.4 2.0 24 40-65 45-68 (82)
47 1wfh_A Zinc finger (AN1-like) 48.8 14 0.0005 23.8 2.9 32 33-66 10-41 (64)
48 2d8y_A Eplin protein; LIM doma 48.0 8.9 0.0003 24.1 1.8 24 40-65 44-67 (91)
49 2rgt_A Fusion of LIM/homeobox 47.4 9.3 0.00032 26.8 2.0 33 40-73 95-127 (169)
50 1wg2_A Zinc finger (AN1-like) 43.3 17 0.00057 23.5 2.5 30 34-65 11-40 (64)
51 2cor_A Pinch protein; LIM doma 41.8 14 0.00047 22.8 1.9 30 33-68 38-67 (79)
52 4fc8_A Transcription protein R 41.7 10 0.00035 29.6 1.6 39 38-76 70-123 (219)
53 2cup_A Skeletal muscle LIM-pro 39.3 15 0.00051 23.2 1.8 24 40-65 35-58 (101)
54 2dlo_A Thyroid receptor-intera 39.0 18 0.00063 22.0 2.2 24 40-65 43-67 (81)
55 1rut_X Flinc4, fusion protein 39.0 16 0.00054 26.1 2.1 29 40-70 99-127 (188)
56 1b8t_A Protein (CRP1); LIM dom 38.1 23 0.00078 25.2 2.9 28 40-70 144-171 (192)
57 1wfp_A Zinc finger (AN1-like) 33.9 31 0.0011 22.8 2.7 30 35-66 22-51 (74)
58 1wff_A Riken cDNA 2810002D23 p 33.2 39 0.0013 22.8 3.2 29 36-65 23-51 (85)
59 2jw6_A Deformed epidermal auto 33.0 21 0.0007 20.5 1.6 35 37-74 8-42 (52)
60 2odd_A Protein CBFA2T1; MYND z 28.9 25 0.00085 21.2 1.5 35 37-74 16-50 (64)
61 2ecg_A Baculoviral IAP repeat- 24.5 29 0.00098 21.0 1.2 19 38-56 56-74 (75)
62 1wfl_A Zinc finger protein 216 24.0 33 0.0011 22.7 1.5 29 35-65 22-50 (74)
63 2ecy_A TNF receptor-associated 21.6 40 0.0014 19.5 1.4 15 40-55 52-66 (66)
64 1x4w_A Hypothetical protein FL 21.1 41 0.0014 21.7 1.5 30 36-66 13-44 (67)
No 1
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=91.30 E-value=0.14 Score=33.45 Aligned_cols=37 Identities=27% Similarity=0.573 Sum_probs=31.2
Q ss_pred CchhhhcCcCCCCCCCCCCCeeEEcCC-CcccChhhHH
Q 045147 34 EPHFLDSCFLCRKPLGYNSDIFMYRGN-TPFCSKECRQ 70 (113)
Q Consensus 34 ~~~FL~~C~~C~K~L~~~~DIymYrGe-~AFCS~ECR~ 70 (113)
...+-..|..|+|.|..|+--|-..|+ .-|||..|=.
T Consensus 16 ~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~ 53 (62)
T 2das_A 16 TKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS 53 (62)
T ss_dssp SSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred CCccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence 345678999999999999999988887 4699999954
No 2
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=90.42 E-value=0.15 Score=30.81 Aligned_cols=29 Identities=38% Similarity=0.604 Sum_probs=23.5
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhHH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECRQ 70 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~ 70 (113)
.|..|+++|.. ..|+-++.++||..+|-.
T Consensus 34 ~C~~C~~~L~~--~~f~~~~g~~yC~~~C~~ 62 (65)
T 2iyb_E 34 LCSCCSKCLIG--QKFMPVEGMVFCSVECKK 62 (65)
T ss_dssp BCTTTCCBCTT--SCCEEETTEEESSHHHHH
T ss_pred ECCCCCCcCCC--CceEEECCEEecCHHHhh
Confidence 68899999963 457778889999999953
No 3
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=89.25 E-value=0.089 Score=32.49 Aligned_cols=31 Identities=32% Similarity=0.658 Sum_probs=24.6
Q ss_pred hhcCcCCCCCCCCCCCeeEEcCCCcccChhhHHHH
Q 045147 38 LDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQ 72 (113)
Q Consensus 38 L~~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~q 72 (113)
+..|-.|.+.|.+.. .+-.+-|||..||...
T Consensus 18 ~~~C~~CG~~i~~~~----~~r~krFCS~sCR~~y 48 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQ----FRGSKRFCSMTCAKRY 48 (49)
T ss_dssp EEECTTTCCEEEGGG----CTTTSSSCSHHHHHHH
T ss_pred CCcChhccCcccccc----CCCCCccCCHHHHhhh
Confidence 457999999997543 3778899999999753
No 4
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=87.49 E-value=0.24 Score=32.64 Aligned_cols=37 Identities=30% Similarity=0.574 Sum_probs=24.3
Q ss_pred hhcCcCCCCCCCCCCCeeEEcCCCcccChhhHHHHHHHHHHHH
Q 045147 38 LDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIEMDEAKE 80 (113)
Q Consensus 38 L~~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~qI~~DE~~E 80 (113)
...|-.|.|+..-..+ --..+|||+.||. |.+-+...
T Consensus 9 ~~~CP~Cgkp~~W~~~----~~~rPFCSeRCr~--iDLg~Wa~ 45 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEI----SPFRPFCSKRCQL--IDLGEWAA 45 (68)
T ss_dssp EEECTTTCCEEECSSS----SSCCSSSSHHHHH--HHHSCSSS
T ss_pred cCcCCCCCCccccccc----CCCCcccCHHHHh--hhHHHHhc
Confidence 3579999999752222 2357999999985 44444433
No 5
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.26 E-value=1.2 Score=27.47 Aligned_cols=28 Identities=18% Similarity=0.540 Sum_probs=21.5
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECR 69 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR 69 (113)
.|..|+++|..+ +.|..++..+||. +|-
T Consensus 33 ~C~~C~~~L~~~-~~f~~~~~~~yC~-~C~ 60 (73)
T 1wig_A 33 LCVRCGQMFAEG-EEMYLQGSSIWHP-ACR 60 (73)
T ss_dssp CCSSSCCCCCSS-CCCEEETTEEECT-THH
T ss_pred EeCCCCCCCCCC-CeeEeeCCEEECh-HHC
Confidence 588999999854 5666677899996 464
No 6
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.91 E-value=3.3 Score=24.78 Aligned_cols=29 Identities=24% Similarity=0.592 Sum_probs=21.5
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhHHH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECRQE 71 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~ 71 (113)
.|..|+++|. .+.|.-++.+.|| ..|-.+
T Consensus 35 ~C~~C~~~L~--~~~~~~~~~~~yC-~~cy~~ 63 (72)
T 1x61_A 35 VCSTCRAQLR--GQHFYAVERRAYC-EGCYVA 63 (72)
T ss_dssp BCSSSCCBCT--TSCEEESSSCEEE-HHHHHH
T ss_pred cccccCCcCC--cCcCEeeCCeEEC-HHHHHH
Confidence 5889999995 3567777889998 455543
No 7
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=75.37 E-value=3.1 Score=27.93 Aligned_cols=30 Identities=20% Similarity=0.470 Sum_probs=22.2
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhHHH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECRQE 71 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~ 71 (113)
.|..|++.|..+ +.|.-+..+.|| ..|-.+
T Consensus 38 ~C~~C~~~L~~g-~~f~~~~g~~yC-~~cy~~ 67 (123)
T 2l3k_A 38 KCAACQKHFSVG-DRYLLINSDIVC-EQDIYE 67 (123)
T ss_dssp BCTTTCCBCCTT-CEEEECSSSEEE-GGGHHH
T ss_pred ccccCCCCCCCC-CcEEeeCCEEEc-HHHhHH
Confidence 588999999655 567777789999 555543
No 8
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=74.37 E-value=2.1 Score=28.48 Aligned_cols=28 Identities=39% Similarity=0.660 Sum_probs=22.5
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECR 69 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR 69 (113)
.|..|+++|. .+.|.-++.++||..+|-
T Consensus 95 ~C~~C~~~l~--~~~f~~~~~~~yC~~~~~ 122 (126)
T 2xqn_T 95 LCSCCSKCLI--GQKFMPVEGMVFCSVECK 122 (126)
T ss_dssp BCTTTCCBCT--TSEEEEETTEEESSHHHH
T ss_pred CcCCCCCccC--CCeeEeECCEEcchHHhh
Confidence 5888999997 366777788999998885
No 9
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.75 E-value=3.6 Score=24.49 Aligned_cols=28 Identities=25% Similarity=0.666 Sum_probs=21.4
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhHH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECRQ 70 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~ 70 (113)
.|..|+++|. .+.|.-+...+|| ..|-.
T Consensus 33 ~C~~C~~~L~--~~~~~~~~~~~yC-~~cy~ 60 (69)
T 2cur_A 33 VCVTCSKKLA--GQRFTAVEDQYYC-VDCYK 60 (69)
T ss_dssp BCTTTCCBCT--TSCEEECSSCEEE-HHHHH
T ss_pred EECCCCCCCC--CCccEeECCEEEC-HHHhH
Confidence 5889999997 3567778889999 45643
No 10
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=72.59 E-value=2.5 Score=26.65 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=22.3
Q ss_pred hcCcCCCCCCCCCCCeeEEcCCCcccChhhHHHH
Q 045147 39 DSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQ 72 (113)
Q Consensus 39 ~~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~q 72 (113)
-.|..|.=-+.. ++.+| ++.+.|||++|-..+
T Consensus 8 CaC~~C~c~Vs~-~eai~-~dGK~YCSe~Ca~gH 39 (55)
T 1jjd_A 8 CACEPCLCNVDP-SKAID-RNGLYYCSEACADGH 39 (55)
T ss_dssp CSSTTCCCCBCT-TTSEE-SSSCEESSHHHHHTS
T ss_pred ecCCCCeeEech-HHhhh-cCCeEEehHHHHccC
Confidence 457777777764 35555 455999999997643
No 11
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=71.39 E-value=4.7 Score=26.11 Aligned_cols=35 Identities=26% Similarity=0.617 Sum_probs=29.2
Q ss_pred hhcCcCCCCCCCCCCCeeEEcCCC---cccChhhHHHH
Q 045147 38 LDSCFLCRKPLGYNSDIFMYRGNT---PFCSKECRQEQ 72 (113)
Q Consensus 38 L~~C~~C~K~L~~~~DIymYrGe~---AFCS~ECR~~q 72 (113)
+..|.+|..+|.||..+-.-|.|. -|||.-|+...
T Consensus 4 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f 41 (66)
T 3j21_V 4 WNVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYY 41 (66)
T ss_dssp CCBCTTTCSBCCTTCCEEEECSSSCEEEESSHHHHHHH
T ss_pred eeEecCcCCcccCCCCeEEEecCCcEEEEECHHHHHHH
Confidence 357999999999999887777774 49999998765
No 12
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.16 E-value=5.7 Score=24.19 Aligned_cols=27 Identities=33% Similarity=0.803 Sum_probs=20.5
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECR 69 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR 69 (113)
.|..|+++|.. +.|.-++..+|| ..|-
T Consensus 43 ~C~~C~~~L~~--~~~~~~~~~~yC-~~cy 69 (80)
T 2cuq_A 43 VCTGCQTPLAG--QQFTSRDEDPYC-VACF 69 (80)
T ss_dssp BCSSSCCBCTT--CCEEECSSSEEE-HHHH
T ss_pred CcccCCCcCCC--CeeEeECCEEEC-HHHH
Confidence 58899999963 466678889999 4554
No 13
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=66.93 E-value=4.5 Score=30.31 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=30.4
Q ss_pred hhcCcCCCCCCCCCCCeeEEcCCC---cccChhhHHHHH
Q 045147 38 LDSCFLCRKPLGYNSDIFMYRGNT---PFCSKECRQEQI 73 (113)
Q Consensus 38 L~~C~~C~K~L~~~~DIymYrGe~---AFCS~ECR~~qI 73 (113)
+..|++|..+|.||..+-.-|.|. -|||.-|+....
T Consensus 5 ~~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~ 43 (158)
T 4a17_T 5 TGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLSL 43 (158)
T ss_dssp CEECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHHH
T ss_pred EEEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHHH
Confidence 357999999999999888888774 499999998854
No 14
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.27 E-value=3 Score=24.96 Aligned_cols=28 Identities=25% Similarity=0.591 Sum_probs=21.1
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhHH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECRQ 70 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~ 70 (113)
.|..|+++|..+ .|..+..+.||. .|-.
T Consensus 33 ~C~~C~~~L~~~--~f~~~~g~~yC~-~c~~ 60 (70)
T 2d8x_A 33 RCDLCQEVLADI--GFVKNAGRHLCR-PCHN 60 (70)
T ss_dssp BCSSSCCBCSSS--CCEEETTEEECH-HHHH
T ss_pred EeCCCCCcCCCC--ccEeECCeEECH-HHhh
Confidence 588999999865 476777899984 4543
No 15
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.11 E-value=3.5 Score=25.37 Aligned_cols=27 Identities=30% Similarity=0.824 Sum_probs=20.3
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhh
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKEC 68 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~EC 68 (113)
.|..|+++|..+ +.|..+|...||. .|
T Consensus 43 ~C~~C~~~L~~~-~~~~~~~~~~~C~-~C 69 (81)
T 1v6g_A 43 VCAVCRLPFPPG-DRVTFNGKECMCQ-KC 69 (81)
T ss_dssp SCSSSCCCCCSS-SCEEEETTEEEEH-HH
T ss_pred ccccCCCCCCCC-CEEEeCCCCEECh-hh
Confidence 588999999854 6677787667883 45
No 16
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.60 E-value=5.4 Score=24.20 Aligned_cols=29 Identities=31% Similarity=0.590 Sum_probs=21.7
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhHH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECRQ 70 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~ 70 (113)
.|..|+++|.. ..|.-+..++||...|-.
T Consensus 38 ~C~~C~~~L~~--~~~~~~~g~~yC~~~cy~ 66 (76)
T 2cu8_A 38 KCERCSKTLTP--GGHAEHDGKPFCHKPCYA 66 (76)
T ss_dssp BCSSSCCBCCT--TSCEEETTEEECTTTHHH
T ss_pred CCCCCCCccCC--CceEeECCEEecchHHHH
Confidence 58899999984 456677789999645643
No 17
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=63.89 E-value=6.2 Score=29.45 Aligned_cols=48 Identities=8% Similarity=0.141 Sum_probs=35.9
Q ss_pred hcCcCCCCCCCCCCCeeEEcCCC---cccChhhHHHHHHHHHHHHhhhccC
Q 045147 39 DSCFLCRKPLGYNSDIFMYRGNT---PFCSKECRQEQIEMDEAKERSWKKS 86 (113)
Q Consensus 39 ~~C~~C~K~L~~~~DIymYrGe~---AFCS~ECR~~qI~~DE~~Ek~~~~s 86 (113)
..|++|..+|.||..+-.-+.|. -|||.-|.....+--.-+.-.|...
T Consensus 4 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~ 54 (155)
T 3izc_Z 4 EIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVL 54 (155)
T ss_dssp EECTTTCSEECTTCCEEEECTTCCEEEESSHHHHHHHHHTCCHHHHSSSCS
T ss_pred eEecCcCCcccCCCCeEEEecCCCEEEEEcHHHHHHHHhccCcccchhHHH
Confidence 56999999999999888888774 5999999887654444444445443
No 18
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=63.14 E-value=4.9 Score=28.56 Aligned_cols=30 Identities=17% Similarity=0.628 Sum_probs=20.3
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhHH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECRQ 70 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~ 70 (113)
.|..|++.|..+...|+-...+.|| ..|-.
T Consensus 149 ~C~~C~~~L~~g~~f~~~~~g~~yC-~~cy~ 178 (182)
T 2jtn_A 149 ACVVCKRQLATGDEFYLMEDSRLVC-KADYE 178 (182)
T ss_dssp CCTTTCCCCCTTCEEEECTTSCEEC-HHHHH
T ss_pred cCCCCCCCCCCCCceEEccCCEEEC-HHHHH
Confidence 5888888887654445555667888 45543
No 19
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.68 E-value=4.8 Score=24.11 Aligned_cols=26 Identities=23% Similarity=0.614 Sum_probs=20.1
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhh
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKEC 68 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~EC 68 (113)
.|..|+++|. ...|.-+..++||. .|
T Consensus 37 ~C~~C~~~L~--~~~f~~~~g~~yC~-~c 62 (72)
T 1x4l_A 37 NCKKCSLSLV--GRGFLTERDDILCP-DC 62 (72)
T ss_dssp BCSSSCCBCT--TSCCEECSSSEECH-HH
T ss_pred EeccCCCcCC--CCccEeECCEEECh-hH
Confidence 5889999997 35677788899995 44
No 20
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=62.53 E-value=6 Score=23.99 Aligned_cols=29 Identities=24% Similarity=0.555 Sum_probs=21.3
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhHH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECRQ 70 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~ 70 (113)
.|..|+++|..+ .|.-+..+.||...|-.
T Consensus 29 ~C~~C~~~L~~~--~~~~~~g~~yC~~~cy~ 57 (76)
T 1iml_A 29 KCEKCGKTLTSG--GHAEHEGKPYCNHPCYS 57 (76)
T ss_dssp BCTTTCCBCCTT--TEEEETTEEEETTTHHH
T ss_pred CccccCccCCCC--ceECcCCeEeeCHHHHH
Confidence 588999999865 46667779999644643
No 21
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=62.39 E-value=6.8 Score=29.48 Aligned_cols=36 Identities=14% Similarity=0.319 Sum_probs=29.9
Q ss_pred hcCcCCCCCCCCCCCeeEEcCCC---cccChhhHHHHHH
Q 045147 39 DSCFLCRKPLGYNSDIFMYRGNT---PFCSKECRQEQIE 74 (113)
Q Consensus 39 ~~C~~C~K~L~~~~DIymYrGe~---AFCS~ECR~~qI~ 74 (113)
..|++|..+|.||..+-.-|.|- -|||.-|+...++
T Consensus 6 e~CsFcG~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~ 44 (162)
T 3iz5_Z 6 ELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHN 44 (162)
T ss_dssp EECTTTCSEECSSCSEEEECTTSCEEEECSHHHHHHHHH
T ss_pred EEecCcCCcccCCCCeEEEecCCCEEEEECHHHHHHHHc
Confidence 56999999999999887778774 5999999877643
No 22
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=62.05 E-value=2.5 Score=24.97 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=20.1
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECR 69 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR 69 (113)
.|..|+++|..+ .|.-++.++|| ..|-
T Consensus 41 ~C~~C~~~L~~~--~~~~~~g~~yC-~~~y 67 (72)
T 3f6q_B 41 VCAQCFQQFPEG--LFYEFEGRKYC-EHDF 67 (72)
T ss_dssp SCTTTCCCCGGG--CCEEETTEEEC-HHHH
T ss_pred cccCCCCCCCCC--CeEeECCeEeC-HHHH
Confidence 488999999865 56667779999 4443
No 23
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=60.52 E-value=5.6 Score=24.03 Aligned_cols=27 Identities=22% Similarity=0.726 Sum_probs=20.1
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECR 69 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR 69 (113)
.|..|+++|.. +.|.-++.++||. .|-
T Consensus 48 ~C~~C~~~L~~--~~f~~~~~~~yC~-~cy 74 (77)
T 2egq_A 48 HCKKCSVNLAN--KRFVFHQEQVYCP-DCA 74 (77)
T ss_dssp BCSSSCCBCTT--SCCCEETTEECCH-HHH
T ss_pred EehhcCCCCCC--CccEeECCEEECh-HHh
Confidence 58899999973 4566777799994 453
No 24
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.76 E-value=4.8 Score=23.99 Aligned_cols=27 Identities=33% Similarity=0.923 Sum_probs=20.0
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECR 69 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR 69 (113)
.|..|+++|..+ .|.-+..+.||. .|-
T Consensus 35 ~C~~C~~~L~~~--~~~~~~~~~yC~-~cy 61 (72)
T 1x4k_A 35 ICHRCQQPIGTK--SFIPKDNQNFCV-PCY 61 (72)
T ss_dssp CCSSSCCCCCSS--SEEEETTEEEEH-HHH
T ss_pred cccccCCccCCC--ccCccCCeEECH-HHH
Confidence 488999999754 566677789984 453
No 25
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=58.96 E-value=8.2 Score=28.82 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=29.0
Q ss_pred hhcCcCCCCCCCCCCCeeEEcCC---CcccChhhHHHH
Q 045147 38 LDSCFLCRKPLGYNSDIFMYRGN---TPFCSKECRQEQ 72 (113)
Q Consensus 38 L~~C~~C~K~L~~~~DIymYrGe---~AFCS~ECR~~q 72 (113)
+..|++|..+|.||..+-.-|.| --|||.-|+...
T Consensus 3 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f 40 (157)
T 2zkr_u 3 VELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAF 40 (157)
T ss_dssp -CBCTTTCCBCCTTCCEEEECTTSCEEEESSHHHHHHH
T ss_pred eeeecCcCCcccCCCceEEEeeCCcEEEEecHHHHHHH
Confidence 35799999999999988777877 359999998764
No 26
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=58.21 E-value=5 Score=23.63 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=18.8
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccC
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCS 65 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS 65 (113)
.|..|+++|.. +.|.-+....||.
T Consensus 33 ~C~~C~~~L~~--~~~~~~~g~~yC~ 56 (66)
T 1nyp_A 33 VCAKCEKPFLG--HRHYERKGLAYCE 56 (66)
T ss_dssp BCTTTCCBCSS--SCCEEETTEEECH
T ss_pred EECCCCCCCCC--CceEeECCcEECH
Confidence 58899999974 4566777799994
No 27
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=58.06 E-value=10 Score=24.53 Aligned_cols=35 Identities=17% Similarity=0.503 Sum_probs=28.7
Q ss_pred hhcCcCCCCCCCCCCCeeEEcCCC---cccChhhHHHH
Q 045147 38 LDSCFLCRKPLGYNSDIFMYRGNT---PFCSKECRQEQ 72 (113)
Q Consensus 38 L~~C~~C~K~L~~~~DIymYrGe~---AFCS~ECR~~q 72 (113)
...|++|..+|.||..+-.-|.|. -|||.-|+...
T Consensus 3 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~f 40 (66)
T 1vq8_U 3 TRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNA 40 (66)
T ss_dssp -CBCTTTCCBCCSSCCEEEECTTSCEEEESCHHHHHHH
T ss_pred eeEecCcCCcccCCCceEEEeeCCcEEEEECHHHHHHH
Confidence 357999999999999877777773 59999999874
No 28
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=57.58 E-value=5.4 Score=24.52 Aligned_cols=27 Identities=30% Similarity=0.744 Sum_probs=20.0
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECR 69 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR 69 (113)
.|..|+++|... .|.-+..+.|| ..|-
T Consensus 36 ~C~~C~~~L~~~--~~~~~~~~~yC-~~cy 62 (81)
T 1a7i_A 36 LCMVCRKNLDST--TVAIHDAEVYC-KSCY 62 (81)
T ss_dssp ECSSSCCEECSS--CCEEETTEEEC-SHHH
T ss_pred ccCCCCCCCCCC--CeEeeCCEEEC-HHHH
Confidence 588999999754 36666779999 4444
No 29
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=57.32 E-value=6.1 Score=26.22 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=20.3
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccC
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCS 65 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS 65 (113)
.|..|+++|......|..+..++||.
T Consensus 31 ~C~~C~~~L~~~~~~~~~~~g~~yC~ 56 (131)
T 2xjy_A 31 SCDLCGCRLGEVGRRLYYKLGRKLCR 56 (131)
T ss_dssp BCTTTCCBCSSTTCCEEEETTEEECH
T ss_pred ccCcCCCccccCCCeEEEECCEEeec
Confidence 58899999975335677788899994
No 30
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.09 E-value=6.6 Score=24.02 Aligned_cols=29 Identities=21% Similarity=0.700 Sum_probs=20.5
Q ss_pred cCcCCCCCCCCCCCeeEE-cCCCcccChhhHH
Q 045147 40 SCFLCRKPLGYNSDIFMY-RGNTPFCSKECRQ 70 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymY-rGe~AFCS~ECR~ 70 (113)
.|..|+++|..+ +.|+. ++.++||. .|-.
T Consensus 43 ~C~~C~~~L~~g-~~f~~~~~~~~~C~-~c~~ 72 (81)
T 1x6a_A 43 ACMSCKVIIEDG-DAYALVQHATLYCG-KCHN 72 (81)
T ss_dssp BCTTTCCBCCTT-SCEEECSSSCEEEH-HHHH
T ss_pred CccCCCCccCCC-CcEEEeeCCEEECH-HHHH
Confidence 588999999765 44553 67789984 4543
No 31
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.84 E-value=5.7 Score=24.29 Aligned_cols=27 Identities=26% Similarity=0.823 Sum_probs=20.1
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECR 69 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR 69 (113)
.|..|+++|..+ .|.-++..+||. .|-
T Consensus 45 ~C~~C~~~L~~~--~~~~~~~~~yC~-~cy 71 (82)
T 1x63_A 45 TCSNCKQVIGTG--SFFPKGEDFYCV-TCH 71 (82)
T ss_dssp CCSSSCCCCTTS--CEEEETTEEEEH-HHH
T ss_pred chhhCCCccCCC--ccEeeCCEEECH-HHH
Confidence 588999999854 566677799984 553
No 32
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.19 E-value=6.8 Score=23.83 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=18.9
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccC
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCS 65 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS 65 (113)
.|..|+++|..+ .|+.++.++||.
T Consensus 43 ~C~~C~~~L~~~--~~~~~~~~~yC~ 66 (80)
T 1x3h_A 43 VCGDCFTSFSTG--SFFELDGRPFCE 66 (80)
T ss_dssp BCSSSCCBSCSS--CCEESSSCEECH
T ss_pred ChhhCCCCCCCC--cEEeECCEEECH
Confidence 488999999754 466778899984
No 33
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.38 E-value=7.7 Score=22.96 Aligned_cols=27 Identities=33% Similarity=0.718 Sum_probs=20.3
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECR 69 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR 69 (113)
.|..|+++|.. +.|..+..+.||. .|-
T Consensus 33 ~C~~C~~~L~~--~~~~~~~~~~yC~-~cy 59 (70)
T 2d8z_A 33 VCTACRKQLSG--QRFTARDDFAYCL-NCF 59 (70)
T ss_dssp BCSSSCCBCTT--SCCEESSSSEECH-HHH
T ss_pred ccCCCCCcCCc--CceEeeCCeEECH-HHH
Confidence 58899999963 5677788899983 443
No 34
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.03 E-value=6.7 Score=23.86 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=18.9
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccC
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCS 65 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS 65 (113)
.|..|+++|. .+.|.-+..++||.
T Consensus 37 ~C~~C~~~L~--~~~f~~~~g~~yC~ 60 (76)
T 1x68_A 37 NCGKCSVSLV--GKGFLTQNKEIFCQ 60 (76)
T ss_dssp BCTTTCCBCS--SSCEEEETTEEEET
T ss_pred ChhhCCCcCC--CCceEeECCEEECH
Confidence 5889999997 35566677799996
No 35
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.43 E-value=6 Score=24.73 Aligned_cols=24 Identities=21% Similarity=0.677 Sum_probs=19.3
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccCh
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSK 66 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ 66 (113)
.|..|++.|. + .|..+..++||..
T Consensus 44 ~C~~C~~~L~-~--~~~~~~g~~yC~~ 67 (80)
T 2dj7_A 44 KCQTCSVILT-G--EYISKDGVPYCES 67 (80)
T ss_dssp BCSSSCCBCS-S--CCEEETTEEECTT
T ss_pred CcCcCCCCcC-C--CeEEECCEEECHH
Confidence 5889999997 3 4777888999964
No 36
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.89 E-value=8.5 Score=24.20 Aligned_cols=28 Identities=21% Similarity=0.660 Sum_probs=20.7
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhHH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECRQ 70 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~ 70 (113)
.|..|+++|.. ..|.-+..+.||. .|-.
T Consensus 53 ~C~~C~~~L~~--~~f~~~~g~~yC~-~cy~ 80 (90)
T 2dar_A 53 NCAHCKNTMAY--IGFVEEKGALYCE-LCYE 80 (90)
T ss_dssp BCSSSCCBCSS--SCBEESSSCEECH-HHHH
T ss_pred ccCCCCCCCCC--CEeEeECCEEECH-HHHH
Confidence 58889999974 4577788899994 4543
No 37
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=52.91 E-value=7.2 Score=24.49 Aligned_cols=27 Identities=15% Similarity=0.400 Sum_probs=19.3
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECR 69 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR 69 (113)
.|..|++.|..+ .|+.+..+.||. .|-
T Consensus 53 ~C~~C~~~L~~~--~~~~~~g~~yC~-~~y 79 (89)
T 1x64_A 53 VCADCNLNLKQK--GYFFVEGELYCE-THA 79 (89)
T ss_dssp CCSSSCCCTTTS--CCEEETTEEECH-HHH
T ss_pred EecCCCCCCCCC--CeEeECCEEECH-HHH
Confidence 588899999754 355567789983 444
No 38
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.91 E-value=4.4 Score=24.44 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=17.9
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccC
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCS 65 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS 65 (113)
.|..|+++|..+ + |.-+..+.||.
T Consensus 41 ~C~~C~~~L~~~-~-~~~~~g~~yC~ 64 (77)
T 1g47_A 41 VCAQCFQQFPEG-L-FYEFEGRKYCE 64 (77)
T ss_dssp CCTTTCCCCGGG-C-SEEETTEEECH
T ss_pred eECCCCCCCCCC-C-eEeECCeEeCH
Confidence 488899999865 4 55566689983
No 39
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=52.91 E-value=7.7 Score=25.69 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=20.2
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhHH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECRQ 70 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~ 70 (113)
.|..|+++|..+ +.|+-++...||. .|-.
T Consensus 96 ~C~~C~~~L~~g-~~f~~~~~~~~C~-~c~~ 124 (131)
T 2xjy_A 96 KCAACQKHFCVG-DRYLLINSDIVCE-QDIY 124 (131)
T ss_dssp BCTTTCCBCCTT-CEEEEETTEEEEG-GGHH
T ss_pred ccCCCCCCCCCC-CEEEEECCEEEcH-HHHH
Confidence 488899999755 4455567789995 4433
No 40
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.87 E-value=8.6 Score=23.96 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=18.4
Q ss_pred cCcCCCCCCCCCCCeeEE-cCCCcccCh
Q 045147 40 SCFLCRKPLGYNSDIFMY-RGNTPFCSK 66 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymY-rGe~AFCS~ 66 (113)
.|..|++.|..+ ..+.| +..+.||..
T Consensus 44 ~C~~C~~~L~~~-~~~~~~~~g~~yC~~ 70 (82)
T 2co8_A 44 RCHTCEATLWPG-GYEQHPGDGHFYCLQ 70 (82)
T ss_dssp BCSSSCCBCCTT-SEECCTTTCCCEETT
T ss_pred EEcCCCCCcCCC-ceeEeCcCCEEEChH
Confidence 578899999754 43434 677899964
No 41
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=51.58 E-value=7.5 Score=25.65 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=20.0
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccC
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCS 65 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS 65 (113)
.|..|+++|......|..+..++||.
T Consensus 32 ~C~~C~~~L~~~g~~~~~~~g~~yC~ 57 (114)
T 1j2o_A 32 SCDLCGCRLGEVGRRLYYKLGRKLCR 57 (114)
T ss_dssp CCSSSCSCCCCSSSCCCCBTTBCCCH
T ss_pred cccccCCchhcCCCeeEEECCeeech
Confidence 58899999974225677788899984
No 42
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=51.25 E-value=5.6 Score=26.59 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=21.5
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECR 69 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR 69 (113)
.|..|+++|......|+.+..++||. .|-
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~-~cy 62 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCR-NDY 62 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECH-HHH
T ss_pred CcCCCCCcccccCCeEEEECCeeecH-HHH
Confidence 58999999973235677888899984 443
No 43
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.14 E-value=8.3 Score=22.86 Aligned_cols=27 Identities=30% Similarity=0.759 Sum_probs=19.2
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECR 69 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR 69 (113)
.|..|+++|..+ . |.-+....||. .|-
T Consensus 35 ~C~~C~~~L~~~-~-~~~~~~~~yC~-~cy 61 (72)
T 1wyh_A 35 LCSGCEQPLGSR-S-FVPDKGAHYCV-PCY 61 (72)
T ss_dssp BCTTTCCBTTTS-C-EEEETTEEEEH-HHH
T ss_pred eECCCCCcCCCC-c-cCCcCCeEECH-HHH
Confidence 588899999854 3 55566689984 443
No 44
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.46 E-value=4.7 Score=24.81 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=19.9
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhHH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECRQ 70 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~ 70 (113)
.|..|++.|.. ..|+.+..+.|| ..|-.
T Consensus 43 ~C~~C~~~L~~--~~~~~~~g~~yC-~~cy~ 70 (79)
T 1x62_A 43 VCTDCGTNLKQ--KGHFFVEDQIYC-EKHAR 70 (79)
T ss_dssp SCSSSCCCHHH--HCCEESSSCEEC-HHHHH
T ss_pred eeCCCCCCCCC--CCeEeECCEEEC-HHHHH
Confidence 47889999963 456677789998 44543
No 45
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=49.97 E-value=5.5 Score=27.15 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=16.3
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccCh
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSK 66 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ 66 (113)
.|..|+++|......|..+..++||..
T Consensus 90 ~C~~C~~~L~~~g~~f~~~dg~~yC~~ 116 (123)
T 2l4z_A 90 KCSSCQAQLGDIGTSSYTKSGMILCRN 116 (123)
T ss_dssp BCTTTCCBGGGTTCCCBCSSSCCBCHH
T ss_pred CcCcCCCcccccCCceEEECCEEeCHH
Confidence 466777887521234555666778743
No 46
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.09 E-value=9.3 Score=23.38 Aligned_cols=24 Identities=21% Similarity=0.647 Sum_probs=18.9
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccC
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCS 65 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS 65 (113)
.|..|+++|.. +.|.-++.++||.
T Consensus 45 ~C~~C~~~L~~--~~f~~~~~~~~C~ 68 (82)
T 2ehe_A 45 RCCRCQRSLAD--EPFTCQDSELLCN 68 (82)
T ss_dssp BCTTTCCBCSS--CCEEEETTEEEET
T ss_pred eecCCCCccCC--CccEeeCCEEECH
Confidence 48889999973 4677777899995
No 47
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=48.80 E-value=14 Score=23.79 Aligned_cols=32 Identities=38% Similarity=0.776 Sum_probs=24.9
Q ss_pred CCchhhhcCcCCCCCCCCCCCeeEEcCCCcccCh
Q 045147 33 QEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSK 66 (113)
Q Consensus 33 ~~~~FL~~C~~C~K~L~~~~DIymYrGe~AFCS~ 66 (113)
++..+-..|..|+|+|+-- .|--|-..-||+.
T Consensus 10 ~~k~~~~rC~~C~kkvgl~--~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 10 SPPQRPNRCTVCRKRVGLT--GFMCRCGTTFCGS 41 (64)
T ss_dssp CCCSSCCCCTTTCCCCCTT--CEECSSSCEECTT
T ss_pred CCCCcCCcChhhCCccCcc--CEEeecCCEeccc
Confidence 4456678999999998642 5777888999984
No 48
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.01 E-value=8.9 Score=24.14 Aligned_cols=24 Identities=17% Similarity=0.535 Sum_probs=18.0
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccC
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCS 65 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS 65 (113)
.|..|+++|..+ + |.-+....||.
T Consensus 44 ~C~~C~~~L~~~-~-~~~~~g~~yC~ 67 (91)
T 2d8y_A 44 RCSYCNNKLSLG-T-YASLHGRIYCK 67 (91)
T ss_dssp BCTTTCCBCCTT-T-CCCSSSCCCCH
T ss_pred eeCCCCCCCCCC-C-cEeECCEEECH
Confidence 488899999864 4 55667789983
No 49
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=47.40 E-value=9.3 Score=26.77 Aligned_cols=33 Identities=12% Similarity=0.516 Sum_probs=22.6
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhHHHHH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQI 73 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~qI 73 (113)
.|..|++.|..+...|+-.....||. .|-.+.+
T Consensus 95 ~C~~C~~~L~~g~~f~~~~~g~~~C~-~c~~~~~ 127 (169)
T 2rgt_A 95 ACVVCKRQLATGDEFYLMEDSRLVCK-ADYETAK 127 (169)
T ss_dssp BCTTTCCBCCTTCEEEECTTSCEEEH-HHHHHHH
T ss_pred cCCCCCCCCCCCCceEEccCCeEECH-HHHHHHh
Confidence 68899999986645555556689984 5554443
No 50
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=43.33 E-value=17 Score=23.45 Aligned_cols=30 Identities=27% Similarity=0.574 Sum_probs=23.5
Q ss_pred CchhhhcCcCCCCCCCCCCCeeEEcCCCcccC
Q 045147 34 EPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCS 65 (113)
Q Consensus 34 ~~~FL~~C~~C~K~L~~~~DIymYrGe~AFCS 65 (113)
+..+-..|..|+|+|+-- .|--|-..-||+
T Consensus 11 ~~~~~~rC~~C~kkvgl~--~f~CrCg~~FC~ 40 (64)
T 1wg2_A 11 PVRPNNRCFSCNKKVGVM--GFKCKCGSTFCG 40 (64)
T ss_dssp CSCCSCSCTTTCCCCTTS--CEECTTSCEECS
T ss_pred CCCcCCcChhhCCccccc--CeEeecCCEecc
Confidence 345678999999998642 477788899998
No 51
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.76 E-value=14 Score=22.82 Aligned_cols=30 Identities=27% Similarity=0.553 Sum_probs=20.9
Q ss_pred CCchhhhcCcCCCCCCCCCCCeeEEcCCCcccChhh
Q 045147 33 QEPHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSKEC 68 (113)
Q Consensus 33 ~~~~FL~~C~~C~K~L~~~~DIymYrGe~AFCS~EC 68 (113)
....| .|..|+++|..+ .| -+..++||. .|
T Consensus 38 H~~CF--~C~~C~~~L~~~--~f-~~~g~~yC~-~c 67 (79)
T 2cor_A 38 HPDHF--NCANCGKELTAD--AR-ELKGELYCL-PC 67 (79)
T ss_dssp CTTTS--BCSSSCCBCCTT--CE-EETTEEECH-HH
T ss_pred CCCCC--EeCCCCCccCCC--CE-eECCEEeCH-HH
Confidence 34455 689999999854 36 556689984 44
No 52
>4fc8_A Transcription protein RTR1; zinc finger; 2.50A {Kluyveromyces lactis}
Probab=41.65 E-value=10 Score=29.55 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=22.7
Q ss_pred hhcCc--CCCCCCCCCCCee-------------EEcCCCcccChhhHHHHHHHH
Q 045147 38 LDSCF--LCRKPLGYNSDIF-------------MYRGNTPFCSKECRQEQIEMD 76 (113)
Q Consensus 38 L~~C~--~C~K~L~~~~DIy-------------mYrGe~AFCS~ECR~~qI~~D 76 (113)
...|. +|.+++..-++-| .|-.-.-|||.+|-..-+..-
T Consensus 70 ~k~CGYPLC~~~~~~~~~ky~Is~~tk~~~~nkvyd~l~~fCS~~Cy~aS~f~~ 123 (219)
T 4fc8_A 70 VKRCGYPLCSKSQARVRDPFADVQMTNFLRQNNPYAYLTEYCTKAHFRCSQFYQ 123 (219)
T ss_dssp TTCCSSTTCCSCCSCC-------------------CGGGTCSSHHHHHHHHHHH
T ss_pred cccCCCCCCCCcccccCCCceeeeccccccccCcHHHHHhhhhHHHHHHHHHHH
Confidence 44554 5888876433333 344568999999987655543
No 53
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=39.30 E-value=15 Score=23.16 Aligned_cols=24 Identities=29% Similarity=0.789 Sum_probs=18.0
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccC
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCS 65 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS 65 (113)
.|..|+++|. .+.|.-+..++||.
T Consensus 35 ~C~~C~~~L~--~~~~~~~~g~~yC~ 58 (101)
T 2cup_A 35 RCAKCLHPLA--NETFVAKDNKILCN 58 (101)
T ss_dssp CCSSSCCCTT--SSCCEEETTEEECH
T ss_pred cccccCCCCC--cCeeECcCCEEECh
Confidence 4888999995 34566677799983
No 54
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.05 E-value=18 Score=21.98 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=17.9
Q ss_pred cCcCCCCCCCCCCCeeEEc-CCCcccC
Q 045147 40 SCFLCRKPLGYNSDIFMYR-GNTPFCS 65 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYr-Ge~AFCS 65 (113)
.|..|+++|.. +.|+.. ..++||.
T Consensus 43 ~C~~C~~~L~~--~~f~~~~~g~~yC~ 67 (81)
T 2dlo_A 43 TCVVCHRGLDG--IPFTVDATSQIHCI 67 (81)
T ss_dssp BCSSSCCBCTT--SCEECCTTCCCEEH
T ss_pred CcccCCCccCC--CeeEECCCCEEECH
Confidence 58899999973 467665 4589984
No 55
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=38.99 E-value=16 Score=26.07 Aligned_cols=29 Identities=34% Similarity=0.664 Sum_probs=20.5
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhHH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECRQ 70 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~ 70 (113)
.|..|++.|..+ +.|.-....+|| ..|-.
T Consensus 99 ~C~~C~~~L~~g-~~f~~~~g~~yC-~~c~~ 127 (188)
T 1rut_X 99 TCSTCRNRLVPG-DRFHYINGSLFC-EHDRP 127 (188)
T ss_dssp BCTTTCCBCCTT-CEEEEETTEEEE-GGGCC
T ss_pred eECCCCCCCCCC-CeEEEECCeEEC-HHHHH
Confidence 588899999765 455556678999 45543
No 56
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=38.06 E-value=23 Score=25.21 Aligned_cols=28 Identities=25% Similarity=0.592 Sum_probs=20.5
Q ss_pred cCcCCCCCCCCCCCeeEEcCCCcccChhhHH
Q 045147 40 SCFLCRKPLGYNSDIFMYRGNTPFCSKECRQ 70 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~ 70 (113)
.|..|+++|..+ .|.-+..+.|| ..|-.
T Consensus 144 ~C~~C~~~L~~~--~~~~~~g~~yC-~~cy~ 171 (192)
T 1b8t_A 144 RCAKCGKSLEST--TLADKDGEIYC-KGCYA 171 (192)
T ss_dssp BCTTTCCBCCSS--SEEEETTEEEE-HHHHH
T ss_pred CccccCCCCCCC--cccccCCEEeC-HHHHH
Confidence 588899999754 46677789998 55543
No 57
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.91 E-value=31 Score=22.81 Aligned_cols=30 Identities=27% Similarity=0.595 Sum_probs=23.5
Q ss_pred chhhhcCcCCCCCCCCCCCeeEEcCCCcccCh
Q 045147 35 PHFLDSCFLCRKPLGYNSDIFMYRGNTPFCSK 66 (113)
Q Consensus 35 ~~FL~~C~~C~K~L~~~~DIymYrGe~AFCS~ 66 (113)
..+-..|..|+|+|+-- .|--|-..-||+.
T Consensus 22 k~~~~RC~~C~kkvgL~--~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVT--GFKCRCGSTFCGT 51 (74)
T ss_dssp TCCCCBCSSSCCBCTTT--CEECTTSCEECTT
T ss_pred cccCccchhhcCccccc--ceEeccCCEeccc
Confidence 35668999999999643 5777888999983
No 58
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=33.19 E-value=39 Score=22.77 Aligned_cols=29 Identities=34% Similarity=0.808 Sum_probs=23.1
Q ss_pred hhhhcCcCCCCCCCCCCCeeEEcCCCcccC
Q 045147 36 HFLDSCFLCRKPLGYNSDIFMYRGNTPFCS 65 (113)
Q Consensus 36 ~FL~~C~~C~K~L~~~~DIymYrGe~AFCS 65 (113)
.+...|..|+|+|+-- --|--|-..-||+
T Consensus 23 ~~~~rC~~C~kkvgl~-~~f~CrCg~~FC~ 51 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLA-TSFECRCGNNFCA 51 (85)
T ss_dssp CCCCBCSSSCCBCSSS-SCEECTTCCEECT
T ss_pred ccCccchhhCCeeccc-CCeEcCCCCEecc
Confidence 4568999999999742 3577888899998
No 59
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=33.03 E-value=21 Score=20.48 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=19.6
Q ss_pred hhhcCcCCCCCCCCCCCeeEEcCCCcccChhhHHHHHH
Q 045147 37 FLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIE 74 (113)
Q Consensus 37 FL~~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~qI~ 74 (113)
....|..|.++. .-..---....|||.+|......
T Consensus 8 ~~~~C~~C~~~~---~~~C~~C~~~~YCs~~CQ~~~W~ 42 (52)
T 2jw6_A 8 KEQSCVNCGREA---MSECTGCHKVNYCSTFCQRKDWK 42 (52)
T ss_dssp ---CCSSSSSSC---SEECTTTCSSEESSHHHHHHHTT
T ss_pred cCCcCCCCCCCC---cCcCCCCCCEeecCHHHHHHHHH
Confidence 567888888752 11111123567999999876543
No 60
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=28.85 E-value=25 Score=21.15 Aligned_cols=35 Identities=20% Similarity=0.489 Sum_probs=22.8
Q ss_pred hhhcCcCCCCCCCCCCCeeEEcCCCcccChhhHHHHHH
Q 045147 37 FLDSCFLCRKPLGYNSDIFMYRGNTPFCSKECRQEQIE 74 (113)
Q Consensus 37 FL~~C~~C~K~L~~~~DIymYrGe~AFCS~ECR~~qI~ 74 (113)
....|..|.++. .-..---....|||.+|......
T Consensus 16 ~~~~C~~C~~~~---~~~Cs~C~~~~YCs~~CQ~~~W~ 50 (64)
T 2odd_A 16 SSESCWNCGRKA---SETCSGCNTARYCGSFCQHKDWE 50 (64)
T ss_dssp CSSSCTTTSSCC---CEEETTTSCCEESSHHHHHHHHH
T ss_pred CCCcCccccCCC---cccCCCCCChhhCCHHHHHHHHH
Confidence 567888998842 12222234567999999887655
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.48 E-value=29 Score=21.02 Aligned_cols=19 Identities=32% Similarity=0.854 Sum_probs=14.8
Q ss_pred hhcCcCCCCCCCCCCCeeE
Q 045147 38 LDSCFLCRKPLGYNSDIFM 56 (113)
Q Consensus 38 L~~C~~C~K~L~~~~DIym 56 (113)
+..|..|++++.....||+
T Consensus 56 ~~~CP~Cr~~i~~~~~i~~ 74 (75)
T 2ecg_A 56 VDKCPMCYTVITFKQKIFM 74 (75)
T ss_dssp CSBCTTTCCBCCCCCBCCC
T ss_pred CCCCccCCceecCcEEEec
Confidence 5679999999987666664
No 62
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.02 E-value=33 Score=22.69 Aligned_cols=29 Identities=34% Similarity=0.720 Sum_probs=22.5
Q ss_pred chhhhcCcCCCCCCCCCCCeeEEcCCCcccC
Q 045147 35 PHFLDSCFLCRKPLGYNSDIFMYRGNTPFCS 65 (113)
Q Consensus 35 ~~FL~~C~~C~K~L~~~~DIymYrGe~AFCS 65 (113)
..+-..|..|+|+|+- --|--|-..-||+
T Consensus 22 k~~~nRC~~CrKkvgL--~gf~CrCg~~FCs 50 (74)
T 1wfl_A 22 KPKKNRCFMCRKKVGL--TGFDCRCGNLFCG 50 (74)
T ss_dssp CSCTTBCSSSCCBCGG--GCEECTTSCEECS
T ss_pred CCcCCcChhhCCcccc--cCeecCCCCEech
Confidence 3467899999999863 2477788889998
No 63
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.64 E-value=40 Score=19.51 Aligned_cols=15 Identities=20% Similarity=0.733 Sum_probs=12.1
Q ss_pred cCcCCCCCCCCCCCee
Q 045147 40 SCFLCRKPLGYNSDIF 55 (113)
Q Consensus 40 ~C~~C~K~L~~~~DIy 55 (113)
.|..|+++|... +||
T Consensus 52 ~CP~Cr~~~~~~-~if 66 (66)
T 2ecy_A 52 KCTACQESIVKD-KVF 66 (66)
T ss_dssp CCTTTCCCCCTT-TCC
T ss_pred CCCCCCcCCChh-hcC
Confidence 699999999864 776
No 64
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.06 E-value=41 Score=21.73 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=21.7
Q ss_pred hhhhcCcCCCCCCCCCCC--eeEEcCCCcccCh
Q 045147 36 HFLDSCFLCRKPLGYNSD--IFMYRGNTPFCSK 66 (113)
Q Consensus 36 ~FL~~C~~C~K~L~~~~D--IymYrGe~AFCS~ 66 (113)
..-..|..|+|++.-- . .|--|-..-||+.
T Consensus 13 ~~~~rC~~C~kk~gL~-~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 13 KSRRRCFQCQTKLELV-QQELGSCRCGYVFCML 44 (67)
T ss_dssp SCTTBCSSSCCBCCHH-HHHHHCCSSSCCCCTT
T ss_pred ccCCcchhhCCeeccc-ccCceEecCCCEehhc
Confidence 4567899999999632 1 1566888899983
Done!