BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045149
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4J2F|A Chain A, Crystal Structure Of A Glutathione Transferase Family
Member From Ricinus Communis, Target Efi-501866
Length = 223
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 87/120 (72%), Gaps = 4/120 (3%)
Query: 3 QGVAVWRMFHSNRDQ-ESRMKAILEMLQTIEEHGL---REKIFHGDKIGLLDIAFGSMLY 58
+G A+W +F + ++ E +K LE+L+TIEEH + +K F GDKIG++DIAF + +
Sbjct: 104 KGTAIWNIFRTKGEELEKAVKNCLEVLKTIEEHAMGVSDDKYFGGDKIGIVDIAFCGIAH 163
Query: 59 WLQILEDIVGVQLFDPHKFPGLNAWFEIFKKAPVIEENLPDQDGISLFFKRRREKWLTSA 118
WL ++E++ GV++ + KFP L+AW E FK+AP+I+ENLPD+D ++ FFKRRRE L SA
Sbjct: 164 WLGVIEEVAGVKVLESQKFPRLHAWTENFKEAPIIKENLPDRDQMTAFFKRRREMILASA 223
>pdb|1GWC|A Chain A, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|B Chain B, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|C Chain C, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
Length = 230
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 5 VAVWRMFHSNRDQESRMKAILEMLQTIE--EHGLRE-----KIFHGDKIGLLDIAFGSML 57
VA WR + + +E + + + + E LRE F GD +GL+D+A G +L
Sbjct: 110 VAPWRQWLRGKTEEEKSEGKKQAFAAVGVLEGALRECSKGGGFFGGDGVGLVDVALGGVL 169
Query: 58 YWLQILEDIVGVQLFDPHKFPGLNAWFEIFKKAPVIEENLPD 99
W+++ E + G ++FD K P L AW E F + + LPD
Sbjct: 170 SWMKVTEALSGDKIFDAAKTPLLAAWVERFIELDAAKAALPD 211
>pdb|2VO4|A Chain A, Glutathione Transferase From Glycine Max
pdb|2VO4|B Chain B, Glutathione Transferase From Glycine Max
pdb|3FHS|A Chain A, Glutathione Transferase From Glycine Max At 2.7 Resolution
pdb|3FHS|B Chain B, Glutathione Transferase From Glycine Max At 2.7 Resolution
Length = 219
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 4 GVAVWRMFHSNRDQESRMKAILEMLQTIEEHGLREKIFHGDKIGLLDIAFGSMLYWLQIL 63
G +W ++E+ K +E L+ +EE + F GD +G +DIA W +
Sbjct: 110 GRKIWT--SKGEEKEAAKKEFIEALKLLEEQLGDKTYFGGDNLGFVDIALVPFYTWFKAY 167
Query: 64 EDIVGVQLFDPHKFPGLNAWFEIFKKAPVIEENLPDQDGISLFFKRRREK 113
E + + + P AW + + + ++LPDQ + F R+K
Sbjct: 168 ETFGTLNI--ESECPKFIAWAKRCLQKESVAKSLPDQQKVYEFIMDLRKK 215
>pdb|3VWX|A Chain A, Structural Analysis Of An Epsilon-class Glutathione
S-transferase From Housefly, Musca Domestica
pdb|3VWX|B Chain B, Structural Analysis Of An Epsilon-class Glutathione
S-transferase From Housefly, Musca Domestica
pdb|3VWX|C Chain C, Structural Analysis Of An Epsilon-class Glutathione
S-transferase From Housefly, Musca Domestica
pdb|3VWX|D Chain D, Structural Analysis Of An Epsilon-class Glutathione
S-transferase From Housefly, Musca Domestica
Length = 222
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 10 MFHSNRDQ--ESRMKAILEMLQTIEEHGLREKIFHGDKIGLLDIAFGSMLYWLQILEDIV 67
+F N+ Q + ++ +I+E +E K GD + + D + + + L +I
Sbjct: 119 LFFRNQTQIPQHQIDSIVESYGFLESFLKNNKYMAGDHLTIADFSIVTSVTSLVAFAEI- 177
Query: 68 GVQLFDPHKFPGLNAWFEIFKKAPVIEE 95
D KFP L+AW + + P EE
Sbjct: 178 -----DQSKFPKLSAWLKSLQSLPFYEE 200
>pdb|3GRC|A Chain A, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|B Chain B, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|C Chain C, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|D Chain D, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
Length = 140
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 90 APVIEENLPDQDGISLFFKRRREK 113
A ++ NLPDQDG+SL RR+
Sbjct: 53 AXTVDLNLPDQDGVSLIRALRRDS 76
>pdb|1JLV|A Chain A, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|B Chain B, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|C Chain C, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|D Chain D, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|E Chain E, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|F Chain F, Anopheles Dirus Species B Glutathione S-transferases 1-3
Length = 209
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Query: 13 SNRDQESRMKAILEMLQT-IEEHGLREKIFHGDKIGLLDIAFGSMLYWLQILEDIVGVQL 71
+N + E +MK ++ L T ++ H K GD + + D+ + + D+ G +L
Sbjct: 122 ANAENEKKMKDAVDFLNTFLDGH----KYVAGDSLTIADLTVLATVSTY----DVAGFEL 173
Query: 72 FDPHKFPGLNAWFE-IFKKAP 91
K+P + AW+E K+AP
Sbjct: 174 ---AKYPHVAAWYERTRKEAP 191
>pdb|3M8N|A Chain A, Crystal Structure Of A Possible Gutathione S-Tranferase
From Rhodopseudomonas Palustris
pdb|3M8N|B Chain B, Crystal Structure Of A Possible Gutathione S-Tranferase
From Rhodopseudomonas Palustris
pdb|3M8N|C Chain C, Crystal Structure Of A Possible Gutathione S-Tranferase
From Rhodopseudomonas Palustris
pdb|3M8N|D Chain D, Crystal Structure Of A Possible Gutathione S-Tranferase
From Rhodopseudomonas Palustris
Length = 225
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 28 LQTIEEHGLREKIFHGDKIGLLDIAFGSMLYWLQILEDIVGVQLFDPHKFPGLNAWFEIF 87
LQ E H F ++ + DIA LY + D FD FP +NAW
Sbjct: 140 LQVXENHLKTNDYFAAGQLTIADIA----LYGYTHVADQCD---FDLSTFPAVNAWLRRV 192
Query: 88 KKAP 91
++ P
Sbjct: 193 EQTP 196
>pdb|1AW9|A Chain A, Structure Of Glutathione S-Transferase Iii In Apo Form
Length = 216
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 24 ILEMLQTIEEHGLREKIFHGDKIGLLDIAFGSMLYWLQILEDIVGVQLFDPHKFPGLNAW 83
+ ++L E H R K GD+ L D S L +L G+ PH + AW
Sbjct: 139 LAKVLDVYEAHLARNKYLAGDEFTLADANHASYLLYLSKTPK-AGLVAARPH----VKAW 193
Query: 84 FEIFKKAPVIEENL 97
+E P ++ +
Sbjct: 194 WEAIVARPAFQKTV 207
>pdb|3PTR|B Chain B, Phf2 Jumonji Domain
pdb|3PU3|A Chain A, Phf2 Jumonji Domain-Nog Complex
pdb|3PU3|B Chain B, Phf2 Jumonji Domain-Nog Complex
pdb|3PU8|B Chain B, Phf2 Jumonji-Nog-Fe(Ii) Complex
pdb|3PU8|A Chain A, Phf2 Jumonji-Nog-Fe(Ii) Complex
pdb|3PUA|A Chain A, Phf2 Jumonji-Nog-Ni(Ii)
pdb|3PUS|A Chain A, Phf2 Jumonji-Nog-Ni(Ii)
pdb|3PUS|B Chain B, Phf2 Jumonji-Nog-Ni(Ii)
Length = 392
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 9 RMFHSNRDQESRMKAILEMLQTIEEHGLREKIFHGDKIGLLDIAFGSMLYWLQILEDIVG 68
R F S D +R+ L +EEHG E I K G L +A + +++ +E+ VG
Sbjct: 37 RTFPSAEDVVARVPGSQLTLGYMEEHGFTEPILVPKKDG-LGLAVPAPTFYVSDVENYVG 95
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 11 FHSNRDQESRMKAILEMLQTIEEHGLREKIFHGDKIGLLDIAFGSMLYWLQ 61
F S ++ S+++ + + ++TIEE+ IG +D F + WLQ
Sbjct: 901 FSSLKENGSQLRCVQQTIETIEEN-----------IGWMDKNFDKIRVWLQ 940
>pdb|4IVF|A Chain A, Crystal Structure Of Glutathione Transferase Homolog From
Lodderomyces Elongisporus, Target Efi-501753, With Two
Gsh Per Subunit
pdb|4IVF|B Chain B, Crystal Structure Of Glutathione Transferase Homolog From
Lodderomyces Elongisporus, Target Efi-501753, With Two
Gsh Per Subunit
pdb|4IVF|C Chain C, Crystal Structure Of Glutathione Transferase Homolog From
Lodderomyces Elongisporus, Target Efi-501753, With Two
Gsh Per Subunit
pdb|4IVF|D Chain D, Crystal Structure Of Glutathione Transferase Homolog From
Lodderomyces Elongisporus, Target Efi-501753, With Two
Gsh Per Subunit
pdb|4IVF|E Chain E, Crystal Structure Of Glutathione Transferase Homolog From
Lodderomyces Elongisporus, Target Efi-501753, With Two
Gsh Per Subunit
pdb|4IVF|F Chain F, Crystal Structure Of Glutathione Transferase Homolog From
Lodderomyces Elongisporus, Target Efi-501753, With Two
Gsh Per Subunit
pdb|4IVF|G Chain G, Crystal Structure Of Glutathione Transferase Homolog From
Lodderomyces Elongisporus, Target Efi-501753, With Two
Gsh Per Subunit
pdb|4IVF|H Chain H, Crystal Structure Of Glutathione Transferase Homolog From
Lodderomyces Elongisporus, Target Efi-501753, With Two
Gsh Per Subunit
Length = 231
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 38 EKIFHGDKIGLLDIAFGSMLYWLQILEDIVGVQLFDPHKFPGLNAWFEIFKKAPVIEEN- 96
K GD+ + D A Y L LE D +++P L W++ K P +++
Sbjct: 166 SKYLVGDRYTVADFALLGWAYRLSRLE-------IDINQWPLLGKWYDSLLKLPAVQKGF 218
Query: 97 -LPDQDGISLFFK 108
+P ++ +L+F+
Sbjct: 219 EVPPKNAENLYFQ 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,756,030
Number of Sequences: 62578
Number of extensions: 145419
Number of successful extensions: 458
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 20
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)