BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045150
(841 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 4 AVVSFVVQRLGDYLIQEAKTLGGVRDEVESLKKELEWMQ-CFVKDAEA-KQAGNDLIRQW 61
A +S ++ +LG+ L +E K GV+ +E L KELE +K E ++ + + W
Sbjct: 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLW 60
Query: 62 VSDIRDIAYDAEDVLDKYMLSV 83
++R+++Y EDV+DK+++ V
Sbjct: 61 ADEVRELSYVIEDVVDKFLVQV 82
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 56/220 (25%)
Query: 194 ISIYGMGGLGKTTLAKKLYHSSDVKNKFECC-----AWVSVSQD------YQFQYLLLRI 242
++IYGM G GK+ LA + + E C WVS+ + + Q L +R+
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSL---LEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRL 206
Query: 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKVDWENLRRAFPDNK 302
+ S ++ L + +D R L ++ L++LDDVW W + +AF
Sbjct: 207 DQEE---SFSQRLPLNIEEAKDRLRVLMLRKHPRS-LLILDDVWDP--W--VLKAF---D 255
Query: 303 NGSRVIITTRNREVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKL---- 358
N ++++TTR++ V + +V + G REKGLE L
Sbjct: 256 NQCQILLTTRDKSVTDSVMGPKHVVPVE----------------SGLGREKGLEILSLFV 299
Query: 359 ----------GREMVEKCDGLPLAIVVLGGLLSTKTPQEW 388
++++C G PL + ++G LL P W
Sbjct: 300 NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLR-DFPNRW 338
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 28/206 (13%)
Query: 194 ISIYGMGGLGKTTLAKKLYHSSDVKNKFECC-----AWVSVSQD------YQFQYLLLRI 242
++I+GM G GK+ LA + + E C WVSV + + Q L R+
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSL---LEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRL 206
Query: 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKVDWENLRRAFPDNK 302
+ S ++ L + +D R L ++ L++LDDVW W + +AF
Sbjct: 207 DQDE---SFSQRLPLNIEEAKDRLRILMLRKHPRS-LLILDDVWDS--W--VLKAF---D 255
Query: 303 NGSRVIITTRNREVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREM 362
+ ++++TTR++ V + YV + G E L + ++ L + +
Sbjct: 256 SQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEIL--SLFVNMKKADLPEQAHSI 313
Query: 363 VEKCDGLPLAIVVLGGLLSTKTPQEW 388
+++C G PL + ++G LL P W
Sbjct: 314 IKECKGSPLVVSLIGALLRD-FPNRW 338
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 56/220 (25%)
Query: 194 ISIYGMGGLGKTTLAKKLYHSSDVKNKFECC-----AWVSVSQD------YQFQYLLLRI 242
++IYGM G GK+ LA + + E C WVS+ + + Q L +R+
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSL---LEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRL 213
Query: 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKVDWENLRRAFPDNK 302
+ S ++ L + +D R L ++ L++LDDVW W + +AF
Sbjct: 214 DQEE---SFSQRLPLNIEEAKDRLRVLMLRKHPRS-LLILDDVWDP--W--VLKAF---D 262
Query: 303 NGSRVIITTRNREVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKL---- 358
N ++++TT ++ V + +V + G REKGLE L
Sbjct: 263 NQCQILLTTSDKSVTDSVMGPKHVVPVE----------------SGLGREKGLEILSLFV 306
Query: 359 ----------GREMVEKCDGLPLAIVVLGGLLSTKTPQEW 388
++++C G PL + ++G LL P W
Sbjct: 307 NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLR-DFPNRW 345
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 30/207 (14%)
Query: 194 ISIYGMGGLGKTTLAKKLYHSSDVKNKFECC-----AWVSVSQD------YQFQYLLLRI 242
++I+GM G GK+ LA + + E C WVSV + + Q L R+
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSL---LEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRL 212
Query: 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKVDWENLRRAFPDNK 302
+ S ++ L + +D R L ++ L++LDDVW W + +AF
Sbjct: 213 DQDE---SFSQRLPLNIEEAKDRLRILMLRKHPRS-LLILDDVWDS--W--VLKAFDSQ- 263
Query: 303 NGSRVIITTRNREVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKG-LEKLGRE 361
++++TTR++ V + YV + G E L E N +K L +
Sbjct: 264 --CQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGL---EILSLFVNMKKADLPEQAHS 318
Query: 362 MVEKCDGLPLAIVVLGGLLSTKTPQEW 388
++++C G PL + ++G LL P W
Sbjct: 319 IIKECKGSPLVVSLIGALLR-DFPNRW 344
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 560 SIFNLPGLQTLDLSRCIVQLPPETDMMRELRHLIGKLIGTLPIENLT--NLQTLKYVRCK 617
S F+ P LQ LDLSRC +Q E + L HL ++ PI++L L ++
Sbjct: 71 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129
Query: 618 SWIRVNTAKLVN--------LRELHIVGGDGQSMGEMEFSFESIAKLKNL 659
+ N A L N L+EL++ QS E+ F ++ L++L
Sbjct: 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHL 178
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 560 SIFNLPGLQTLDLSRCIVQLPPETDMMRELRHLIGKLIGTLPIENLT--NLQTLKYVRCK 617
S F+ P LQ LDLSRC +Q E + L HL ++ PI++L L ++
Sbjct: 47 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 618 SWIRVNTAKLVN--------LRELHIVGGDGQSMGEMEFSFESIAKLKNL 659
+ N A L N L+EL++ QS E+ F ++ L++L
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHL 154
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 560 SIFNLPGLQTLDLSRCIVQLPPETDMMRELRHLIGKLIGTLPIEN--------LTNLQTL 611
S F+ P LQ LDLSRC +Q E + L HL ++ PI++ L++LQ L
Sbjct: 47 SFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 612 KYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLS 663
V S L L+EL++ QS E+ F ++ L++L S
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSS 158
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 560 SIFNLPGLQTLDLSRCIVQLPPETDMMRELRHLIGKLIGTLPIENLT--NLQTLKYVRCK 617
S F+ P LQ LDLSRC +Q E + L HL ++ PI++L L ++
Sbjct: 47 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 618 SWIRVNTAKLVN--------LRELHIVGGDGQSMGEMEFSFESIAKLKNL 659
+ N A L N L+EL++ QS E+ F ++ L++L
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHL 154
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 560 SIFNLPGLQTLDLSRCIVQLPPETDMMRELRHLIGKLIGTLPIEN--------LTNLQTL 611
S F+ P LQ LDLSRC +Q E + L HL ++ PI++ L++LQ L
Sbjct: 48 SFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 106
Query: 612 KYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLS 663
V S L L+EL++ QS E+ F ++ L++L S
Sbjct: 107 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSS 159
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 560 SIFNLPGLQTLDLSRCIVQLPPETDMMRELRHLIGKLIGTLPIENLT--NLQTLKYVRCK 617
S F+ P LQ LDLSRC +Q E + L HL ++ PI++L L ++
Sbjct: 48 SFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 106
Query: 618 SWIRVNTAKLVN--------LRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLS 663
+ N A L N L+EL++ QS E+ F ++ L++L S
Sbjct: 107 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSS 159
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 560 SIFNLPGLQTLDLSRCIVQLPPETDMMRELRHLIGKLIGTLPIEN--------LTNLQTL 611
S F+ P LQ LDLSRC +Q E + L HL ++ PI++ L++LQ L
Sbjct: 49 SFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 107
Query: 612 KYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLS 663
V S L L+EL++ QS E+ F ++ L++L S
Sbjct: 108 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSS 160
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 560 SIFNLPGLQTLDLSRCIVQLPPETDMMRELRHLIGKLIGTLPIENLT--NLQTLKYVRCK 617
S F+ P LQ LDLSRC +Q E + L HL ++ PI++L L ++
Sbjct: 49 SFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 107
Query: 618 SWIRVNTAKLVN--------LRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLS 663
+ N A L N L+EL++ QS E+ F ++ L++L S
Sbjct: 108 VALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSS 160
>pdb|3H5D|A Chain A, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
pdb|3H5D|B Chain B, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
pdb|3H5D|C Chain C, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
pdb|3H5D|D Chain D, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
Length = 311
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 514 VLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS 573
V E+ E G F+ L +NK + ++ + I + D P I+N+PG
Sbjct: 95 VKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADAS---DLPIIIYNIPG------- 144
Query: 574 RCIVQLPPETDMMRELRHLIGKLIGTLPIENLTNLQTL 611
R +V+L PET M+R H +IG +L N+ L
Sbjct: 145 RVVVELTPET-MLRLADH--PNIIGVKECTSLANMAYL 179
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 56/103 (54%), Gaps = 12/103 (11%)
Query: 591 HLIGKLIGTLPIE----NLTNLQTLKYVRCKSWI---RVNTAKLVNLRELHIVGGDGQSM 643
+L+G TL + NLTNLQTL+ +++ R++ A L +L EL I +++
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI-----KAL 158
Query: 644 GEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPL 686
+ +S+ ++++ L+++LS+ +L ++ +S++ L
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 56/103 (54%), Gaps = 12/103 (11%)
Query: 591 HLIGKLIGTLPIE----NLTNLQTLKYVRCKSWI---RVNTAKLVNLRELHIVGGDGQSM 643
+L+G TL + NLTNLQTL+ +++ R++ A L +L EL I +++
Sbjct: 130 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI-----KAL 184
Query: 644 GEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPL 686
+ +S+ ++++ L+++LS+ +L ++ +S++ L
Sbjct: 185 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 227
>pdb|1RZ3|A Chain A, Structure Of A Possible Uridine Kinase From Bacillus
Stearothermophilus
Length = 201
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 174 DDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKL 211
D D L +LA RLV+ I G+ GKTTLA +L
Sbjct: 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQL 42
>pdb|4ARP|A Chain A, Structure Of The Inactive Pesticin E178a Mutant
pdb|4ARP|B Chain B, Structure Of The Inactive Pesticin E178a Mutant
Length = 357
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 649 SFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSH 688
+F++I++LK SVN+ D + SSN FA P SH
Sbjct: 149 NFDNISQLKEFLRRSVNIVDHDIF---SSNGFAGFNPTSH 185
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 708 MHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEK 757
+H+ PN LS+ + E P+ A S L L+ ++ PYHEK
Sbjct: 111 LHIHEPNAPSLSMLALQAAEGPIVATFHTSTTKSLTLSVFQGILRPYHEK 160
>pdb|2YNM|A Chain A, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
pdb|2YNM|B Chain B, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
Length = 301
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 188 EPRRLVISIYGMGGLGKTTLAKKL 211
E LVI++YG GG+GK+T + L
Sbjct: 31 EEGALVIAVYGKGGIGKSTTSSNL 54
>pdb|1N03|A Chain A, Model For Active Reca Filament
pdb|1N03|B Chain B, Model For Active Reca Filament
pdb|1N03|C Chain C, Model For Active Reca Filament
pdb|1N03|D Chain D, Model For Active Reca Filament
pdb|1N03|E Chain E, Model For Active Reca Filament
pdb|1N03|F Chain F, Model For Active Reca Filament
pdb|1N03|G Chain G, Model For Active Reca Filament
pdb|1REA|A Chain A, Structure Of The Reca Protein-Adp Complex
pdb|2REB|A Chain A, The Structure Of The E. Coli Reca Protein Monomer And
Polymer
Length = 352
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 183 LLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRI 242
L AG P ++ IYG GKTTL ++ ++ + K CA++ Y
Sbjct: 51 LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK--TCAFIDAEHALDPIYARKLG 108
Query: 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDV 285
+ N++ S + G E+ LE C + G ++V+D V
Sbjct: 109 VDIDNLLCSQPDTG-----EQALEICDALARSGAVDVIVVDSV 146
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 183 LLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRI 242
L AG P ++ IYG GKTTL ++ ++ + K CA++ Y
Sbjct: 52 LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK--TCAFIDAEHALDPIYARKLG 109
Query: 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDV 285
+ N++ S + G E+ LE C + G ++V+D V
Sbjct: 110 VDIDNLLCSQPDTG-----EQALEICDALARSGAVDVIVVDSV 147
>pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form 2
pdb|1U98|A Chain A, "crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form3"
pdb|1U99|A Chain A, "crystal Structures Of E. Coli Reca In A Compressed
Helical Filament Form 4"
pdb|1XMS|A Chain A, "e. Coli Reca In Complex With Mnamp-Pnp"
pdb|1XMV|A Chain A, "e. Coli Reca In Complex With Mgadp"
Length = 356
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 183 LLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRI 242
L AG P ++ IYG GKTTL ++ ++ + K CA++ Y
Sbjct: 55 LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK--TCAFIDAEHALDPIYARKLG 112
Query: 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDV 285
+ N++ S + G E+ LE C + G ++V+D V
Sbjct: 113 VDIDNLLCSQPDTG-----EQALEICDALARSGAVDVIVVDSV 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,703,208
Number of Sequences: 62578
Number of extensions: 1035118
Number of successful extensions: 2651
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2625
Number of HSP's gapped (non-prelim): 56
length of query: 841
length of database: 14,973,337
effective HSP length: 107
effective length of query: 734
effective length of database: 8,277,491
effective search space: 6075678394
effective search space used: 6075678394
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)