Query 045150
Match_columns 841
No_of_seqs 667 out of 4193
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:20:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.7E-82 3.7E-87 735.0 42.8 773 2-815 1-872 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.4E-53 1.8E-57 516.5 40.8 591 164-806 181-906 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 8.4E-40 1.8E-44 345.1 15.4 247 172-422 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 4.1E-22 8.8E-27 246.2 13.2 308 480-813 162-496 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.4E-21 3E-26 241.5 14.4 329 460-815 164-522 (968)
6 KOG0444 Cytoskeletal regulator 99.8 2.1E-23 4.5E-28 218.7 -4.8 307 461-806 56-375 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 2.7E-23 5.8E-28 217.9 -6.1 319 460-815 32-361 (1255)
8 KOG4194 Membrane glycoprotein 99.8 3.6E-21 7.8E-26 201.1 3.8 311 461-804 103-427 (873)
9 KOG4194 Membrane glycoprotein 99.8 1.1E-19 2.4E-24 190.0 3.7 300 480-810 76-409 (873)
10 PLN03210 Resistant to P. syrin 99.7 1.1E-17 2.4E-22 206.6 15.8 132 651-806 796-943 (1153)
11 KOG0472 Leucine-rich repeat pr 99.6 1.5E-17 3.3E-22 166.9 -5.6 255 484-778 47-308 (565)
12 KOG0618 Serine/threonine phosp 99.6 3E-17 6.5E-22 181.4 -6.7 185 607-806 242-464 (1081)
13 KOG0472 Leucine-rich repeat pr 99.6 3.2E-17 6.9E-22 164.6 -8.3 257 510-804 45-308 (565)
14 PRK15387 E3 ubiquitin-protein 99.4 4.7E-13 1E-17 153.6 9.5 257 485-815 204-468 (788)
15 KOG0618 Serine/threonine phosp 99.4 2.7E-14 5.9E-19 158.4 -1.9 255 510-800 241-505 (1081)
16 KOG0617 Ras suppressor protein 99.3 4.3E-14 9.2E-19 125.9 -3.4 146 480-639 31-184 (264)
17 KOG0617 Ras suppressor protein 99.3 6.1E-14 1.3E-18 124.9 -2.7 147 508-669 31-185 (264)
18 PRK15370 E3 ubiquitin-protein 99.3 3.2E-12 6.9E-17 147.9 7.2 255 483-797 179-438 (754)
19 PRK15387 E3 ubiquitin-protein 99.3 6.9E-11 1.5E-15 136.0 15.4 235 460-751 222-459 (788)
20 KOG4658 Apoptotic ATPase [Sign 99.2 5.5E-12 1.2E-16 148.2 5.9 302 480-813 521-850 (889)
21 PRK15370 E3 ubiquitin-protein 99.2 3.6E-11 7.8E-16 139.2 11.2 221 482-750 199-428 (754)
22 cd00116 LRR_RI Leucine-rich re 99.2 1.6E-12 3.4E-17 139.7 -1.1 245 502-778 15-289 (319)
23 cd00116 LRR_RI Leucine-rich re 99.2 1.3E-12 2.8E-17 140.3 -3.6 260 514-803 2-288 (319)
24 KOG4237 Extracellular matrix p 99.1 3.8E-12 8.2E-17 128.5 -1.5 249 482-750 67-359 (498)
25 KOG4237 Extracellular matrix p 99.1 5E-12 1.1E-16 127.7 -3.3 230 511-750 68-335 (498)
26 TIGR03015 pepcterm_ATPase puta 99.1 8.4E-09 1.8E-13 107.6 20.2 178 192-380 44-242 (269)
27 PRK00411 cdc6 cell division co 99.0 4.8E-09 1E-13 115.9 17.7 208 165-377 28-256 (394)
28 PF01637 Arch_ATPase: Archaeal 99.0 9.2E-10 2E-14 112.3 10.5 199 169-375 1-233 (234)
29 PF05729 NACHT: NACHT domain 99.0 2.7E-09 5.9E-14 102.3 11.4 141 192-345 1-163 (166)
30 KOG3207 Beta-tubulin folding c 98.9 1.2E-10 2.7E-15 119.4 -0.7 90 713-806 246-338 (505)
31 TIGR02928 orc1/cdc6 family rep 98.9 4.7E-08 1E-12 106.8 18.5 206 166-373 14-243 (365)
32 KOG1259 Nischarin, modulator o 98.8 1.4E-09 3E-14 106.1 2.9 134 624-784 280-414 (490)
33 KOG1909 Ran GTPase-activating 98.8 4.1E-10 9E-15 112.6 -1.0 246 503-778 23-309 (382)
34 PRK04841 transcriptional regul 98.8 1.1E-07 2.4E-12 117.4 17.6 199 167-382 14-231 (903)
35 PRK06893 DNA replication initi 98.7 2.2E-07 4.9E-12 93.5 13.0 149 192-376 40-203 (229)
36 KOG3207 Beta-tubulin folding c 98.6 6E-09 1.3E-13 107.3 0.5 86 480-575 119-208 (505)
37 KOG1909 Ran GTPase-activating 98.6 3.1E-09 6.8E-14 106.5 -2.8 254 480-750 28-311 (382)
38 PRK05564 DNA polymerase III su 98.6 1.5E-06 3.2E-11 92.3 16.8 176 168-374 5-188 (313)
39 PRK13342 recombination factor 98.6 7.4E-07 1.6E-11 98.3 14.3 174 168-377 13-197 (413)
40 PF14580 LRR_9: Leucine-rich r 98.6 2.2E-08 4.7E-13 94.5 1.5 84 689-778 41-124 (175)
41 TIGR00635 ruvB Holliday juncti 98.5 3.4E-07 7.4E-12 97.3 10.3 196 168-378 5-203 (305)
42 PF14580 LRR_9: Leucine-rich r 98.5 4E-08 8.8E-13 92.7 2.7 128 507-666 16-149 (175)
43 COG2256 MGS1 ATPase related to 98.5 7.3E-07 1.6E-11 91.9 11.7 153 190-372 47-208 (436)
44 KOG1259 Nischarin, modulator o 98.5 2.9E-08 6.3E-13 97.1 1.3 132 602-752 280-414 (490)
45 PF13173 AAA_14: AAA domain 98.5 5.1E-07 1.1E-11 81.9 9.3 120 192-337 3-127 (128)
46 PRK00080 ruvB Holliday junctio 98.5 1.1E-06 2.3E-11 94.1 11.5 197 167-378 25-224 (328)
47 KOG2120 SCF ubiquitin ligase, 98.4 1.1E-08 2.5E-13 99.9 -3.5 161 603-778 207-374 (419)
48 KOG0532 Leucine-rich repeat (L 98.4 9.8E-09 2.1E-13 109.0 -4.4 166 513-705 78-249 (722)
49 cd01128 rho_factor Transcripti 98.4 3.2E-07 6.9E-12 92.4 6.1 95 192-287 17-114 (249)
50 PF13401 AAA_22: AAA domain; P 98.4 7.4E-07 1.6E-11 81.5 8.0 113 191-313 4-125 (131)
51 COG4886 Leucine-rich repeat (L 98.4 2.4E-07 5.3E-12 102.5 5.7 60 688-750 230-290 (394)
52 KOG2120 SCF ubiquitin ligase, 98.4 1.2E-08 2.6E-13 99.7 -4.8 180 606-804 185-374 (419)
53 KOG0532 Leucine-rich repeat (L 98.4 3.2E-08 7E-13 105.1 -2.2 149 504-669 92-246 (722)
54 PF13191 AAA_16: AAA ATPase do 98.4 6.7E-07 1.5E-11 87.4 7.0 78 168-247 1-83 (185)
55 PRK14961 DNA polymerase III su 98.4 8.8E-06 1.9E-10 88.0 15.9 195 167-374 16-218 (363)
56 PRK09376 rho transcription ter 98.4 3.5E-07 7.6E-12 95.6 4.6 95 192-287 170-267 (416)
57 TIGR03420 DnaA_homol_Hda DnaA 98.3 4.2E-06 9.2E-11 84.6 12.3 164 175-377 25-202 (226)
58 PTZ00112 origin recognition co 98.3 9.9E-06 2.1E-10 92.0 15.9 203 165-376 753-982 (1164)
59 cd00009 AAA The AAA+ (ATPases 98.3 4.9E-06 1.1E-10 77.7 11.3 123 170-315 1-131 (151)
60 PRK14949 DNA polymerase III su 98.3 8.8E-06 1.9E-10 93.9 14.8 182 167-376 16-220 (944)
61 PRK07003 DNA polymerase III su 98.3 9.8E-06 2.1E-10 91.6 14.8 197 167-375 16-220 (830)
62 PRK12402 replication factor C 98.3 1.1E-05 2.4E-10 87.2 14.5 197 167-375 15-225 (337)
63 PRK06645 DNA polymerase III su 98.3 1.8E-05 3.8E-10 88.0 15.9 197 168-373 22-226 (507)
64 PRK14957 DNA polymerase III su 98.2 1.8E-05 4E-10 88.5 15.5 177 167-371 16-215 (546)
65 PRK12323 DNA polymerase III su 98.2 1.1E-05 2.4E-10 90.0 13.6 200 167-376 16-225 (700)
66 PRK14960 DNA polymerase III su 98.2 1.8E-05 3.8E-10 88.6 15.1 196 167-374 15-217 (702)
67 PRK14963 DNA polymerase III su 98.2 2.5E-05 5.3E-10 87.3 16.0 192 168-373 15-214 (504)
68 PTZ00202 tuzin; Provisional 98.2 5.1E-05 1.1E-09 80.1 16.8 165 163-344 258-433 (550)
69 COG4886 Leucine-rich repeat (L 98.2 8.2E-07 1.8E-11 98.2 3.8 169 507-701 113-288 (394)
70 TIGR00678 holB DNA polymerase 98.2 5E-05 1.1E-09 74.1 15.6 90 275-372 95-187 (188)
71 KOG0531 Protein phosphatase 1, 98.2 2.2E-07 4.8E-12 102.9 -1.3 218 536-778 90-316 (414)
72 COG3899 Predicted ATPase [Gene 98.2 1.1E-05 2.4E-10 96.0 12.6 211 168-383 1-267 (849)
73 TIGR02903 spore_lon_C ATP-depe 98.2 2.3E-05 5.1E-10 90.1 14.5 205 167-377 154-396 (615)
74 PRK14962 DNA polymerase III su 98.1 4.2E-05 9.1E-10 84.8 15.4 185 167-378 14-221 (472)
75 PRK07471 DNA polymerase III su 98.1 8E-05 1.7E-09 79.9 16.9 198 167-376 19-238 (365)
76 PRK14964 DNA polymerase III su 98.1 4E-05 8.7E-10 84.5 14.9 181 167-374 13-215 (491)
77 PRK08727 hypothetical protein; 98.1 2.6E-05 5.7E-10 78.7 12.3 146 192-373 42-201 (233)
78 PRK14956 DNA polymerase III su 98.1 4.4E-05 9.6E-10 83.1 14.5 194 167-373 18-219 (484)
79 TIGR02397 dnaX_nterm DNA polym 98.1 0.0001 2.2E-09 80.3 17.6 182 167-376 14-218 (355)
80 PRK13341 recombination factor 98.1 3.1E-05 6.7E-10 90.0 13.9 169 167-371 28-212 (725)
81 PRK07994 DNA polymerase III su 98.1 3.9E-05 8.5E-10 87.2 14.3 195 167-376 16-220 (647)
82 TIGR00767 rho transcription te 98.1 5.2E-06 1.1E-10 87.5 6.6 95 192-287 169-266 (415)
83 PRK09112 DNA polymerase III su 98.1 7.7E-05 1.7E-09 79.5 15.6 200 166-377 22-241 (351)
84 COG1474 CDC6 Cdc6-related prot 98.1 0.0001 2.2E-09 78.9 16.4 200 166-375 16-237 (366)
85 PRK07940 DNA polymerase III su 98.1 9.7E-05 2.1E-09 79.9 16.2 176 168-376 6-213 (394)
86 PRK09087 hypothetical protein; 98.1 5.1E-05 1.1E-09 75.9 13.0 137 192-375 45-194 (226)
87 KOG4341 F-box protein containi 98.1 1.6E-07 3.5E-12 96.5 -5.1 288 482-806 138-439 (483)
88 PLN03025 replication factor C 98.1 5.3E-05 1.2E-09 80.6 13.8 181 168-374 14-198 (319)
89 PRK14951 DNA polymerase III su 98.1 8E-05 1.7E-09 84.6 15.8 199 167-375 16-224 (618)
90 PRK14958 DNA polymerase III su 98.1 4.9E-05 1.1E-09 85.2 13.9 182 167-375 16-219 (509)
91 PRK04195 replication factor C 98.0 4.9E-05 1.1E-09 85.7 13.9 178 167-374 14-200 (482)
92 KOG0531 Protein phosphatase 1, 98.0 1.1E-06 2.5E-11 97.2 0.7 216 506-749 91-317 (414)
93 KOG4341 F-box protein containi 98.0 2E-07 4.4E-12 95.8 -4.8 280 480-799 162-459 (483)
94 PRK14955 DNA polymerase III su 98.0 5.4E-05 1.2E-09 83.0 13.5 202 167-374 16-226 (397)
95 PRK05896 DNA polymerase III su 98.0 7.1E-05 1.5E-09 83.9 14.3 194 167-372 16-216 (605)
96 PRK00440 rfc replication facto 98.0 8.3E-05 1.8E-09 79.7 14.6 180 167-374 17-201 (319)
97 PRK08691 DNA polymerase III su 98.0 5.5E-05 1.2E-09 85.6 13.0 178 167-375 16-219 (709)
98 COG3903 Predicted ATPase [Gene 98.0 8.7E-06 1.9E-10 84.8 6.1 178 190-383 13-196 (414)
99 PRK08084 DNA replication initi 98.0 7.9E-05 1.7E-09 75.3 12.5 149 192-376 46-209 (235)
100 TIGR01242 26Sp45 26S proteasom 98.0 9.5E-05 2E-09 80.4 13.9 174 166-370 121-328 (364)
101 PRK14970 DNA polymerase III su 98.0 0.00016 3.4E-09 78.9 15.7 180 167-373 17-206 (367)
102 COG2909 MalT ATP-dependent tra 98.0 0.0004 8.6E-09 78.8 18.7 197 176-382 24-239 (894)
103 KOG2028 ATPase related to the 97.9 5.7E-05 1.2E-09 76.5 10.5 129 190-344 161-293 (554)
104 KOG1859 Leucine-rich repeat pr 97.9 4.3E-07 9.4E-12 99.3 -5.3 109 651-778 181-290 (1096)
105 PRK14952 DNA polymerase III su 97.9 0.00022 4.7E-09 80.8 15.8 194 167-371 13-214 (584)
106 PRK07764 DNA polymerase III su 97.9 0.00021 4.5E-09 84.3 16.1 196 167-373 15-218 (824)
107 PRK09111 DNA polymerase III su 97.9 0.0002 4.3E-09 81.6 15.3 200 167-375 24-232 (598)
108 PRK14969 DNA polymerase III su 97.9 0.00024 5.3E-09 80.3 15.4 176 167-373 16-217 (527)
109 PF13855 LRR_8: Leucine rich r 97.9 1.6E-05 3.4E-10 61.3 4.1 55 510-573 1-57 (61)
110 COG5238 RNA1 Ran GTPase-activa 97.9 2.7E-06 5.8E-11 82.5 -0.4 217 507-747 27-282 (388)
111 PF13855 LRR_8: Leucine rich r 97.8 8.1E-06 1.8E-10 62.9 2.1 56 691-747 2-59 (61)
112 PRK05642 DNA replication initi 97.8 0.00022 4.8E-09 72.0 12.8 150 192-377 46-209 (234)
113 PRK14959 DNA polymerase III su 97.8 0.00032 7E-09 79.1 15.1 200 167-379 16-224 (624)
114 PF05621 TniB: Bacterial TniB 97.8 0.0011 2.3E-08 67.6 17.1 194 175-374 45-259 (302)
115 PRK14087 dnaA chromosomal repl 97.8 0.00044 9.6E-09 76.6 15.8 164 191-377 141-320 (450)
116 PRK07133 DNA polymerase III su 97.8 0.00044 9.6E-09 79.3 15.8 191 167-373 18-216 (725)
117 PF05496 RuvB_N: Holliday junc 97.8 0.00028 6.1E-09 68.3 12.0 178 167-380 24-225 (233)
118 PRK14950 DNA polymerase III su 97.8 0.00049 1.1E-08 79.3 16.2 198 167-375 16-220 (585)
119 PRK14954 DNA polymerase III su 97.8 0.00032 6.8E-09 80.1 14.2 201 167-372 16-224 (620)
120 PRK14953 DNA polymerase III su 97.8 0.00075 1.6E-08 75.3 16.8 177 167-375 16-219 (486)
121 PRK08903 DnaA regulatory inact 97.8 0.00052 1.1E-08 69.3 14.4 149 191-379 42-202 (227)
122 PF00308 Bac_DnaA: Bacterial d 97.7 0.00028 6E-09 70.3 11.8 170 179-375 22-207 (219)
123 KOG2543 Origin recognition com 97.7 0.00075 1.6E-08 69.5 14.8 171 165-344 4-192 (438)
124 PHA02544 44 clamp loader, smal 97.7 0.00022 4.8E-09 76.1 11.9 146 167-342 21-170 (316)
125 KOG1859 Leucine-rich repeat pr 97.7 1.3E-06 2.9E-11 95.6 -5.2 210 504-749 78-291 (1096)
126 PRK14971 DNA polymerase III su 97.7 0.00057 1.2E-08 78.6 15.5 179 167-373 17-219 (614)
127 PLN03150 hypothetical protein; 97.7 4E-05 8.6E-10 89.1 6.1 42 532-573 433-474 (623)
128 PF14516 AAA_35: AAA-like doma 97.7 0.0015 3.2E-08 69.8 17.3 204 167-383 11-246 (331)
129 CHL00181 cbbX CbbX; Provisiona 97.7 0.0011 2.3E-08 69.0 15.7 133 192-346 60-210 (287)
130 PRK06305 DNA polymerase III su 97.7 0.00064 1.4E-08 75.4 14.5 179 167-373 17-219 (451)
131 TIGR02880 cbbX_cfxQ probable R 97.6 0.00079 1.7E-08 70.0 13.9 131 193-345 60-208 (284)
132 TIGR02881 spore_V_K stage V sp 97.6 0.00032 6.9E-09 72.4 10.9 154 168-346 7-192 (261)
133 KOG0741 AAA+-type ATPase [Post 97.6 0.00081 1.8E-08 71.8 13.7 145 189-366 536-704 (744)
134 PLN03150 hypothetical protein; 97.6 6.2E-05 1.3E-09 87.5 5.7 92 483-585 419-512 (623)
135 PRK03992 proteasome-activating 97.6 0.0003 6.5E-09 76.8 10.6 172 167-369 131-336 (389)
136 PRK08451 DNA polymerase III su 97.6 0.0015 3.3E-08 72.9 15.8 179 167-376 14-218 (535)
137 PRK11331 5-methylcytosine-spec 97.6 0.00016 3.6E-09 77.8 7.8 108 167-288 175-284 (459)
138 PRK05707 DNA polymerase III su 97.6 0.0025 5.3E-08 67.5 16.6 96 275-376 105-203 (328)
139 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00048 1E-08 82.3 12.5 153 166-344 186-362 (852)
140 PRK14965 DNA polymerase III su 97.6 0.0011 2.3E-08 76.1 14.8 193 167-371 16-215 (576)
141 PRK14948 DNA polymerase III su 97.6 0.0014 3E-08 75.4 15.7 199 167-375 16-221 (620)
142 KOG2982 Uncharacterized conser 97.6 1.3E-05 2.9E-10 78.9 -0.7 61 504-573 65-129 (418)
143 PRK06647 DNA polymerase III su 97.5 0.0023 5.1E-08 72.7 16.5 197 167-375 16-219 (563)
144 PF12799 LRR_4: Leucine Rich r 97.5 6.7E-05 1.4E-09 52.9 2.6 38 511-557 2-39 (44)
145 TIGR03689 pup_AAA proteasome A 97.5 0.00081 1.7E-08 74.7 12.2 161 167-345 182-378 (512)
146 TIGR00362 DnaA chromosomal rep 97.5 0.0016 3.5E-08 71.9 14.8 156 191-373 136-307 (405)
147 KOG2982 Uncharacterized conser 97.5 1.2E-05 2.6E-10 79.2 -1.8 59 511-576 46-108 (418)
148 KOG2227 Pre-initiation complex 97.5 0.0025 5.4E-08 67.6 14.8 176 164-345 147-338 (529)
149 PF12799 LRR_4: Leucine Rich r 97.5 9.4E-05 2E-09 52.1 3.1 39 541-580 1-40 (44)
150 PRK06620 hypothetical protein; 97.5 0.00084 1.8E-08 66.6 11.0 133 192-373 45-186 (214)
151 KOG3665 ZYG-1-like serine/thre 97.5 5.3E-05 1.1E-09 87.7 2.2 81 480-573 146-228 (699)
152 TIGR02639 ClpA ATP-dependent C 97.4 0.00091 2E-08 79.4 12.4 154 167-345 182-358 (731)
153 PRK05563 DNA polymerase III su 97.4 0.0034 7.3E-08 71.7 16.4 196 167-374 16-218 (559)
154 PRK07399 DNA polymerase III su 97.4 0.0038 8.3E-08 65.7 15.3 197 168-376 5-221 (314)
155 PRK00149 dnaA chromosomal repl 97.4 0.0023 4.9E-08 71.7 14.2 156 191-373 148-319 (450)
156 COG1373 Predicted ATPase (AAA+ 97.4 0.0033 7.2E-08 68.6 14.6 116 193-340 39-162 (398)
157 smart00382 AAA ATPases associa 97.3 0.00092 2E-08 61.6 8.9 89 192-290 3-92 (148)
158 PRK08116 hypothetical protein; 97.3 0.00064 1.4E-08 69.9 8.3 101 192-313 115-220 (268)
159 COG5238 RNA1 Ran GTPase-activa 97.3 2.7E-05 5.8E-10 75.8 -1.7 254 481-750 29-316 (388)
160 PRK12422 chromosomal replicati 97.3 0.0017 3.7E-08 71.7 12.1 152 191-369 141-306 (445)
161 PRK15386 type III secretion pr 97.3 0.00047 1E-08 73.5 7.0 43 767-815 156-205 (426)
162 PRK15386 type III secretion pr 97.3 0.00059 1.3E-08 72.7 7.7 66 506-584 48-115 (426)
163 PRK14088 dnaA chromosomal repl 97.3 0.0029 6.4E-08 70.1 13.6 157 191-373 130-302 (440)
164 PRK08118 topology modulation p 97.3 0.00011 2.3E-09 69.9 1.9 34 193-226 3-37 (167)
165 PF00004 AAA: ATPase family as 97.3 0.0014 3.1E-08 59.6 9.1 21 194-214 1-21 (132)
166 PRK08769 DNA polymerase III su 97.2 0.013 2.9E-07 61.4 16.9 96 274-377 111-209 (319)
167 KOG0989 Replication factor C, 97.2 0.0011 2.5E-08 66.3 8.3 184 167-372 36-226 (346)
168 CHL00095 clpC Clp protease ATP 97.2 0.0019 4.1E-08 77.7 11.5 154 167-343 179-352 (821)
169 PTZ00454 26S protease regulato 97.2 0.0018 3.9E-08 70.4 10.2 154 167-346 145-330 (398)
170 PTZ00361 26 proteosome regulat 97.2 0.0013 2.9E-08 71.9 9.0 154 168-347 184-369 (438)
171 PF05673 DUF815: Protein of un 97.1 0.012 2.5E-07 58.2 14.2 119 165-316 25-153 (249)
172 PRK11034 clpA ATP-dependent Cl 97.1 0.0022 4.7E-08 75.3 10.9 155 167-345 186-362 (758)
173 PRK14086 dnaA chromosomal repl 97.1 0.0048 1E-07 69.6 13.1 153 192-371 315-483 (617)
174 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0053 1.2E-07 74.2 14.4 45 167-214 173-217 (852)
175 CHL00176 ftsH cell division pr 97.1 0.0045 9.7E-08 71.3 13.0 173 167-368 183-386 (638)
176 PRK07261 topology modulation p 97.1 0.00088 1.9E-08 64.0 6.3 66 193-287 2-68 (171)
177 PRK10536 hypothetical protein; 97.1 0.0052 1.1E-07 61.4 11.1 134 167-316 55-215 (262)
178 KOG1644 U2-associated snRNP A' 97.1 0.00084 1.8E-08 63.0 5.2 106 658-777 43-150 (233)
179 PRK10865 protein disaggregatio 97.1 0.0027 5.8E-08 76.3 10.9 45 167-214 178-222 (857)
180 PRK08058 DNA polymerase III su 97.1 0.0089 1.9E-07 63.7 13.7 166 169-343 7-180 (329)
181 KOG3665 ZYG-1-like serine/thre 97.0 0.00016 3.4E-09 83.9 0.3 79 606-699 122-204 (699)
182 PF04665 Pox_A32: Poxvirus A32 97.0 0.0029 6.4E-08 62.8 9.0 35 193-229 15-49 (241)
183 COG0593 DnaA ATPase involved i 97.0 0.017 3.6E-07 62.0 15.3 231 190-449 112-374 (408)
184 KOG0733 Nuclear AAA ATPase (VC 97.0 0.0076 1.7E-07 65.9 12.3 95 167-287 190-293 (802)
185 PRK08181 transposase; Validate 97.0 0.0017 3.6E-08 66.4 6.9 34 193-228 108-141 (269)
186 PRK06871 DNA polymerase III su 96.9 0.038 8.3E-07 58.1 16.9 94 274-374 105-201 (325)
187 PF13177 DNA_pol3_delta2: DNA 96.9 0.0055 1.2E-07 57.9 9.4 133 174-333 4-162 (162)
188 PHA00729 NTP-binding motif con 96.9 0.0073 1.6E-07 59.3 10.2 24 190-213 16-39 (226)
189 PRK06526 transposase; Provisio 96.9 0.0012 2.7E-08 67.1 5.0 23 192-214 99-121 (254)
190 TIGR01241 FtsH_fam ATP-depende 96.9 0.0043 9.3E-08 70.4 9.7 174 167-369 55-259 (495)
191 TIGR00763 lon ATP-dependent pr 96.8 0.056 1.2E-06 64.8 19.4 54 166-221 319-375 (775)
192 PRK06090 DNA polymerase III su 96.8 0.064 1.4E-06 56.3 17.4 92 275-376 107-201 (319)
193 KOG2123 Uncharacterized conser 96.8 0.00014 3E-09 71.3 -2.2 98 627-743 18-123 (388)
194 COG2255 RuvB Holliday junction 96.8 0.0034 7.3E-08 62.3 6.9 174 167-376 26-223 (332)
195 TIGR03346 chaperone_ClpB ATP-d 96.7 0.098 2.1E-06 63.4 20.6 122 166-300 564-693 (852)
196 TIGR00602 rad24 checkpoint pro 96.7 0.012 2.6E-07 67.3 12.1 49 166-214 83-133 (637)
197 PRK07993 DNA polymerase III su 96.7 0.052 1.1E-06 57.7 16.1 177 175-374 10-202 (334)
198 PRK12608 transcription termina 96.7 0.0032 7E-08 66.4 6.7 106 176-286 120-230 (380)
199 COG4608 AppF ABC-type oligopep 96.7 0.0099 2.1E-07 59.4 9.6 147 192-341 40-198 (268)
200 COG2884 FtsE Predicted ATPase 96.7 0.018 3.8E-07 53.9 10.5 126 192-322 29-205 (223)
201 PF07693 KAP_NTPase: KAP famil 96.7 0.09 2E-06 56.3 18.1 71 176-248 5-82 (325)
202 PRK09183 transposase/IS protei 96.7 0.0035 7.7E-08 64.2 6.6 22 192-213 103-124 (259)
203 TIGR02639 ClpA ATP-dependent C 96.6 0.0092 2E-07 71.0 10.7 118 166-300 453-579 (731)
204 COG3267 ExeA Type II secretory 96.6 0.13 2.9E-06 50.7 16.5 181 190-378 50-247 (269)
205 PRK12377 putative replication 96.6 0.0058 1.3E-07 61.7 7.6 36 192-229 102-137 (248)
206 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0097 2.1E-07 60.4 9.4 57 190-247 18-78 (235)
207 PF01695 IstB_IS21: IstB-like 96.6 0.0018 3.9E-08 62.1 3.7 35 192-228 48-82 (178)
208 cd01133 F1-ATPase_beta F1 ATP 96.6 0.004 8.6E-08 63.2 6.2 94 192-287 70-174 (274)
209 TIGR02237 recomb_radB DNA repa 96.5 0.0091 2E-07 59.4 8.5 48 190-240 11-58 (209)
210 PRK09361 radB DNA repair and r 96.5 0.011 2.3E-07 59.6 8.8 46 190-238 22-67 (225)
211 cd01120 RecA-like_NTPases RecA 96.5 0.018 3.9E-07 54.5 9.9 40 193-234 1-40 (165)
212 PRK06921 hypothetical protein; 96.5 0.01 2.2E-07 60.9 8.6 37 191-229 117-154 (266)
213 PF12061 DUF3542: Protein of u 96.5 0.0068 1.5E-07 60.5 6.8 78 4-81 296-374 (402)
214 TIGR02640 gas_vesic_GvpN gas v 96.5 0.072 1.6E-06 54.9 14.8 53 177-239 12-64 (262)
215 COG1484 DnaC DNA replication p 96.5 0.0076 1.7E-07 61.4 7.4 36 192-229 106-141 (254)
216 COG0470 HolB ATPase involved i 96.4 0.033 7.2E-07 59.7 12.8 144 168-334 2-170 (325)
217 PRK06964 DNA polymerase III su 96.4 0.14 3E-06 54.4 16.9 93 274-376 130-225 (342)
218 TIGR03345 VI_ClpV1 type VI sec 96.4 0.011 2.3E-07 71.0 9.5 48 166-213 565-618 (852)
219 cd03238 ABC_UvrA The excision 96.4 0.024 5.2E-07 54.1 10.1 118 192-319 22-154 (176)
220 PF13207 AAA_17: AAA domain; P 96.4 0.0022 4.7E-08 57.4 2.8 21 193-213 1-21 (121)
221 PRK10787 DNA-binding ATP-depen 96.4 0.013 2.7E-07 69.6 9.8 162 166-345 321-506 (784)
222 COG1136 SalX ABC-type antimicr 96.4 0.047 1E-06 53.7 12.0 127 192-321 32-210 (226)
223 cd03214 ABC_Iron-Siderophores_ 96.4 0.026 5.5E-07 54.6 10.3 121 192-317 26-161 (180)
224 COG1222 RPT1 ATP-dependent 26S 96.4 0.09 1.9E-06 54.3 14.1 172 168-370 152-357 (406)
225 TIGR01243 CDC48 AAA family ATP 96.4 0.02 4.3E-07 68.4 11.3 174 168-370 179-381 (733)
226 KOG0730 AAA+-type ATPase [Post 96.3 0.056 1.2E-06 60.2 13.4 144 190-359 467-630 (693)
227 PRK08939 primosomal protein Dn 96.3 0.01 2.2E-07 62.3 7.4 98 191-312 156-259 (306)
228 cd01394 radB RadB. The archaea 96.3 0.018 3.9E-07 57.6 9.1 43 190-234 18-60 (218)
229 COG0466 Lon ATP-dependent Lon 96.3 0.033 7.2E-07 62.6 11.6 162 166-345 322-508 (782)
230 cd01393 recA_like RecA is a b 96.3 0.029 6.2E-07 56.6 10.6 94 190-286 18-124 (226)
231 KOG2004 Mitochondrial ATP-depe 96.3 0.034 7.5E-07 62.2 11.5 105 166-288 410-517 (906)
232 KOG4579 Leucine-rich repeat (L 96.3 0.00075 1.6E-08 59.1 -1.0 89 481-582 52-141 (177)
233 PRK06696 uridine kinase; Valid 96.3 0.0037 8.1E-08 62.7 3.8 42 172-213 3-44 (223)
234 PLN03187 meiotic recombination 96.3 0.014 3E-07 61.9 8.1 59 190-249 125-187 (344)
235 PF02562 PhoH: PhoH-like prote 96.2 0.0036 7.9E-08 60.7 3.5 52 172-228 5-56 (205)
236 KOG2228 Origin recognition com 96.2 0.043 9.4E-07 56.0 11.0 176 165-345 22-219 (408)
237 PF10443 RNA12: RNA12 protein; 96.2 0.29 6.4E-06 52.5 17.7 202 172-383 1-285 (431)
238 COG1121 ZnuC ABC-type Mn/Zn tr 96.2 0.041 8.9E-07 55.0 10.5 124 192-318 31-203 (254)
239 PRK10865 protein disaggregatio 96.2 0.054 1.2E-06 65.4 13.6 48 166-213 567-620 (857)
240 TIGR01243 CDC48 AAA family ATP 96.2 0.049 1.1E-06 65.1 13.2 174 167-370 453-657 (733)
241 TIGR02238 recomb_DMC1 meiotic 96.1 0.019 4.2E-07 60.3 8.5 70 177-248 83-156 (313)
242 COG1126 GlnQ ABC-type polar am 96.1 0.07 1.5E-06 51.3 11.3 124 192-320 29-202 (240)
243 PRK06835 DNA replication prote 96.1 0.015 3.3E-07 61.4 7.7 36 192-229 184-219 (329)
244 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.032 6.9E-07 51.9 8.9 120 193-315 4-139 (159)
245 smart00763 AAA_PrkA PrkA AAA d 96.1 0.0034 7.4E-08 66.0 2.8 47 168-214 52-101 (361)
246 TIGR02858 spore_III_AA stage I 96.1 0.079 1.7E-06 54.3 12.5 136 175-319 97-234 (270)
247 CHL00195 ycf46 Ycf46; Provisio 96.1 0.047 1E-06 60.9 11.5 154 168-347 229-407 (489)
248 COG0542 clpA ATP-binding subun 96.1 0.25 5.3E-06 57.5 17.3 121 167-301 491-620 (786)
249 cd03247 ABCC_cytochrome_bd The 96.0 0.034 7.3E-07 53.6 9.2 122 192-319 29-162 (178)
250 PRK04132 replication factor C 96.0 0.16 3.4E-06 60.2 16.2 152 199-374 574-729 (846)
251 cd01131 PilT Pilus retraction 96.0 0.015 3.2E-07 57.2 6.6 110 193-318 3-113 (198)
252 KOG0735 AAA+-type ATPase [Post 96.0 0.085 1.8E-06 59.1 12.8 73 191-287 431-505 (952)
253 COG2812 DnaX DNA polymerase II 96.0 0.025 5.4E-07 62.6 8.9 189 168-371 17-215 (515)
254 KOG1644 U2-associated snRNP A' 96.0 0.0091 2E-07 56.3 4.6 81 607-701 43-124 (233)
255 TIGR02012 tigrfam_recA protein 95.9 0.022 4.7E-07 59.6 7.7 101 178-286 42-143 (321)
256 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.07 1.5E-06 49.3 10.3 101 192-318 27-131 (144)
257 KOG4579 Leucine-rich repeat (L 95.9 0.0015 3.3E-08 57.3 -0.7 79 505-592 48-128 (177)
258 COG1223 Predicted ATPase (AAA+ 95.9 0.073 1.6E-06 52.2 10.4 155 166-346 120-298 (368)
259 TIGR02239 recomb_RAD51 DNA rep 95.9 0.033 7.2E-07 58.7 9.0 71 176-248 82-156 (316)
260 PF13671 AAA_33: AAA domain; P 95.9 0.0041 8.9E-08 57.6 1.9 21 193-213 1-21 (143)
261 PRK06067 flagellar accessory p 95.9 0.043 9.3E-07 55.6 9.5 92 190-286 24-130 (234)
262 KOG1514 Origin recognition com 95.8 0.35 7.5E-06 54.6 16.6 200 166-377 395-622 (767)
263 PRK07952 DNA replication prote 95.8 0.037 8.1E-07 55.7 8.7 36 191-228 99-134 (244)
264 cd00983 recA RecA is a bacter 95.8 0.026 5.7E-07 59.0 7.7 101 178-286 42-143 (325)
265 KOG0733 Nuclear AAA ATPase (VC 95.8 0.13 2.8E-06 56.8 12.9 130 191-346 545-693 (802)
266 PF00448 SRP54: SRP54-type pro 95.8 0.029 6.3E-07 54.7 7.5 57 191-249 1-58 (196)
267 PRK09354 recA recombinase A; P 95.8 0.031 6.7E-07 59.0 8.1 101 178-286 47-148 (349)
268 KOG2739 Leucine-rich acidic nu 95.8 0.0031 6.7E-08 62.0 0.6 56 689-744 90-150 (260)
269 cd03222 ABC_RNaseL_inhibitor T 95.8 0.078 1.7E-06 50.7 10.1 22 192-213 26-47 (177)
270 COG1124 DppF ABC-type dipeptid 95.7 0.078 1.7E-06 52.0 9.9 129 192-322 34-210 (252)
271 PRK07667 uridine kinase; Provi 95.7 0.013 2.9E-07 57.2 4.9 37 176-213 3-39 (193)
272 PRK04301 radA DNA repair and r 95.7 0.048 1E-06 58.0 9.4 57 190-247 101-161 (317)
273 PRK05800 cobU adenosylcobinami 95.7 0.13 2.8E-06 48.9 11.1 82 193-285 3-85 (170)
274 KOG2739 Leucine-rich acidic nu 95.6 0.004 8.6E-08 61.3 0.8 108 605-723 42-153 (260)
275 COG2607 Predicted ATPase (AAA+ 95.6 0.065 1.4E-06 52.1 8.9 115 167-314 60-183 (287)
276 PF05659 RPW8: Arabidopsis bro 95.6 0.21 4.5E-06 45.8 11.9 79 2-80 7-86 (147)
277 COG1120 FepC ABC-type cobalami 95.6 0.079 1.7E-06 53.3 9.9 128 192-321 29-206 (258)
278 KOG1969 DNA replication checkp 95.6 0.036 7.8E-07 62.2 8.1 74 189-288 324-399 (877)
279 COG4618 ArpD ABC-type protease 95.6 0.074 1.6E-06 57.5 10.0 22 192-213 363-384 (580)
280 PTZ00035 Rad51 protein; Provis 95.6 0.058 1.3E-06 57.5 9.4 70 177-248 105-178 (337)
281 COG1618 Predicted nucleotide k 95.6 0.0098 2.1E-07 53.9 3.0 22 192-213 6-27 (179)
282 PLN00020 ribulose bisphosphate 95.6 0.041 8.9E-07 57.7 7.9 25 190-214 147-171 (413)
283 CHL00095 clpC Clp protease ATP 95.6 0.082 1.8E-06 63.9 11.7 121 166-300 508-637 (821)
284 PF00485 PRK: Phosphoribulokin 95.6 0.044 9.5E-07 53.7 7.9 83 193-280 1-87 (194)
285 KOG0739 AAA+-type ATPase [Post 95.6 0.15 3.2E-06 51.1 11.2 94 167-287 133-236 (439)
286 KOG1947 Leucine rich repeat pr 95.5 0.0013 2.8E-08 75.0 -3.5 241 504-806 182-440 (482)
287 PLN03186 DNA repair protein RA 95.5 0.064 1.4E-06 57.0 9.4 71 176-248 109-183 (342)
288 PF08423 Rad51: Rad51; InterP 95.5 0.031 6.8E-07 57.1 6.8 55 192-247 39-97 (256)
289 PRK11889 flhF flagellar biosyn 95.5 0.097 2.1E-06 55.7 10.4 24 190-213 240-263 (436)
290 PRK08699 DNA polymerase III su 95.5 0.13 2.7E-06 54.6 11.5 89 275-373 112-203 (325)
291 cd03223 ABCD_peroxisomal_ALDP 95.5 0.13 2.8E-06 48.8 10.6 115 192-318 28-152 (166)
292 PRK04296 thymidine kinase; Pro 95.5 0.015 3.3E-07 56.6 4.2 113 192-315 3-117 (190)
293 TIGR00959 ffh signal recogniti 95.4 0.14 3E-06 56.2 11.8 24 190-213 98-121 (428)
294 COG0572 Udk Uridine kinase [Nu 95.4 0.024 5.2E-07 55.0 5.3 29 190-220 7-35 (218)
295 cd03235 ABC_Metallic_Cations A 95.4 0.16 3.5E-06 50.5 11.5 23 192-214 26-48 (213)
296 TIGR02236 recomb_radA DNA repa 95.4 0.069 1.5E-06 56.7 9.2 57 190-247 94-154 (310)
297 cd03115 SRP The signal recogni 95.4 0.12 2.5E-06 49.6 10.0 21 193-213 2-22 (173)
298 PRK10867 signal recognition pa 95.3 0.087 1.9E-06 57.7 9.9 24 190-213 99-122 (433)
299 cd03229 ABC_Class3 This class 95.3 0.087 1.9E-06 50.7 8.9 22 192-213 27-48 (178)
300 cd03230 ABC_DR_subfamily_A Thi 95.3 0.096 2.1E-06 50.2 9.1 121 192-319 27-160 (173)
301 PRK13540 cytochrome c biogenes 95.3 0.13 2.8E-06 50.7 10.2 23 192-214 28-50 (200)
302 PRK15455 PrkA family serine pr 95.3 0.013 2.9E-07 64.9 3.4 45 168-213 77-125 (644)
303 cd01122 GP4d_helicase GP4d_hel 95.3 0.18 3.8E-06 52.4 11.8 53 192-247 31-83 (271)
304 PRK06002 fliI flagellum-specif 95.3 0.031 6.7E-07 60.9 6.2 93 192-287 166-265 (450)
305 cd03216 ABC_Carb_Monos_I This 95.3 0.059 1.3E-06 51.0 7.5 113 192-318 27-146 (163)
306 KOG0734 AAA+-type ATPase conta 95.3 0.047 1E-06 59.0 7.2 48 168-215 305-361 (752)
307 TIGR02324 CP_lyasePhnL phospho 95.3 0.24 5.1E-06 49.8 12.3 23 192-214 35-57 (224)
308 KOG0728 26S proteasome regulat 95.2 0.27 5.9E-06 47.9 11.6 127 189-345 179-331 (404)
309 PF14532 Sigma54_activ_2: Sigm 95.2 0.015 3.2E-07 53.5 3.0 44 170-214 1-44 (138)
310 cd03263 ABC_subfamily_A The AB 95.2 0.17 3.6E-06 50.7 10.9 23 192-214 29-51 (220)
311 TIGR01817 nifA Nif-specific re 95.2 0.25 5.5E-06 56.8 13.7 49 165-214 194-242 (534)
312 PRK05703 flhF flagellar biosyn 95.2 0.22 4.9E-06 54.8 12.6 38 192-229 222-259 (424)
313 PRK00771 signal recognition pa 95.2 0.12 2.5E-06 56.9 10.2 91 190-287 94-186 (437)
314 PTZ00301 uridine kinase; Provi 95.2 0.021 4.4E-07 56.3 4.0 23 191-213 3-25 (210)
315 PRK05541 adenylylsulfate kinas 95.1 0.019 4.1E-07 55.3 3.7 36 191-228 7-42 (176)
316 KOG0731 AAA+-type ATPase conta 95.1 0.097 2.1E-06 60.2 9.7 177 168-373 312-521 (774)
317 TIGR03499 FlhF flagellar biosy 95.1 0.068 1.5E-06 55.6 8.0 40 190-229 193-232 (282)
318 PRK04040 adenylate kinase; Pro 95.1 0.037 7.9E-07 53.7 5.6 22 192-213 3-24 (188)
319 PRK11248 tauB taurine transpor 95.1 0.2 4.4E-06 51.4 11.3 23 192-214 28-50 (255)
320 KOG0744 AAA+-type ATPase [Post 95.1 0.077 1.7E-06 53.8 7.7 81 191-287 177-261 (423)
321 PRK13539 cytochrome c biogenes 95.1 0.15 3.3E-06 50.5 10.0 23 192-214 29-51 (207)
322 KOG2035 Replication factor C, 95.1 0.38 8.1E-06 48.0 12.1 186 169-377 15-229 (351)
323 cd03264 ABC_drug_resistance_li 95.1 0.18 3.9E-06 50.1 10.6 21 193-213 27-47 (211)
324 PRK14974 cell division protein 95.1 0.23 5E-06 52.6 11.7 55 190-248 139-196 (336)
325 PF13238 AAA_18: AAA domain; P 95.1 0.015 3.3E-07 52.5 2.6 20 194-213 1-20 (129)
326 KOG2123 Uncharacterized conser 95.0 0.0029 6.2E-08 62.3 -2.3 100 507-634 16-123 (388)
327 cd03246 ABCC_Protease_Secretio 95.0 0.11 2.4E-06 49.8 8.6 119 192-319 29-161 (173)
328 COG0468 RecA RecA/RadA recombi 95.0 0.13 2.8E-06 52.7 9.3 93 189-286 58-151 (279)
329 PF13604 AAA_30: AAA domain; P 95.0 0.11 2.4E-06 50.9 8.6 103 192-315 19-132 (196)
330 cd03228 ABCC_MRP_Like The MRP 95.0 0.28 6E-06 46.9 11.3 119 192-319 29-160 (171)
331 PRK13543 cytochrome c biogenes 95.0 0.27 5.8E-06 49.0 11.6 23 192-214 38-60 (214)
332 cd01135 V_A-ATPase_B V/A-type 95.0 0.07 1.5E-06 54.2 7.2 95 193-287 71-177 (276)
333 cd03237 ABC_RNaseL_inhibitor_d 94.9 0.23 5E-06 50.6 11.1 127 192-319 26-181 (246)
334 TIGR00235 udk uridine kinase. 94.9 0.022 4.9E-07 56.4 3.6 24 190-213 5-28 (207)
335 TIGR01425 SRP54_euk signal rec 94.9 0.36 7.8E-06 52.7 12.9 24 190-213 99-122 (429)
336 PRK05480 uridine/cytidine kina 94.9 0.021 4.5E-07 56.8 3.3 25 190-214 5-29 (209)
337 PRK08233 hypothetical protein; 94.9 0.022 4.8E-07 55.1 3.4 24 191-214 3-26 (182)
338 PRK07132 DNA polymerase III su 94.9 1.3 2.9E-05 46.2 16.5 132 191-344 18-161 (299)
339 cd02019 NK Nucleoside/nucleoti 94.9 0.019 4.1E-07 45.3 2.3 21 193-213 1-21 (69)
340 TIGR03877 thermo_KaiC_1 KaiC d 94.8 0.14 2.9E-06 52.0 9.1 48 190-241 20-67 (237)
341 PRK10733 hflB ATP-dependent me 94.8 0.13 2.9E-06 60.0 10.2 130 192-347 186-337 (644)
342 cd03266 ABC_NatA_sodium_export 94.8 0.22 4.9E-06 49.7 10.6 23 192-214 32-54 (218)
343 cd03301 ABC_MalK_N The N-termi 94.8 0.23 4.9E-06 49.5 10.6 23 192-214 27-49 (213)
344 TIGR01277 thiQ thiamine ABC tr 94.8 0.29 6.3E-06 48.7 11.3 23 192-214 25-47 (213)
345 PRK09544 znuC high-affinity zi 94.8 0.21 4.6E-06 51.1 10.5 23 192-214 31-53 (251)
346 PF01583 APS_kinase: Adenylyls 94.8 0.031 6.8E-07 51.6 3.8 35 192-228 3-37 (156)
347 COG0542 clpA ATP-binding subun 94.7 0.075 1.6E-06 61.5 7.6 156 166-344 169-345 (786)
348 PRK11034 clpA ATP-dependent Cl 94.7 0.093 2E-06 61.9 8.6 47 167-213 458-510 (758)
349 PRK15429 formate hydrogenlyase 94.7 0.5 1.1E-05 56.2 14.9 47 167-214 376-422 (686)
350 TIGR03740 galliderm_ABC gallid 94.7 0.22 4.8E-06 50.0 10.3 22 192-213 27-48 (223)
351 PRK04328 hypothetical protein; 94.7 0.12 2.5E-06 52.9 8.2 53 190-247 22-74 (249)
352 PF12775 AAA_7: P-loop contain 94.7 0.05 1.1E-06 56.1 5.5 33 177-213 23-55 (272)
353 PRK11247 ssuB aliphatic sulfon 94.7 0.35 7.5E-06 49.6 11.8 22 192-213 39-60 (257)
354 cd03298 ABC_ThiQ_thiamine_tran 94.7 0.29 6.2E-06 48.6 10.9 23 192-214 25-47 (211)
355 TIGR03881 KaiC_arch_4 KaiC dom 94.7 0.18 4E-06 50.8 9.6 40 190-231 19-58 (229)
356 COG1102 Cmk Cytidylate kinase 94.6 0.033 7.1E-07 50.7 3.4 44 193-249 2-45 (179)
357 PF00560 LRR_1: Leucine Rich R 94.6 0.016 3.4E-07 33.9 1.0 20 543-563 2-21 (22)
358 TIGR00708 cobA cob(I)alamin ad 94.6 0.22 4.7E-06 47.0 9.0 120 192-314 6-140 (173)
359 PRK13531 regulatory ATPase Rav 94.6 0.029 6.3E-07 61.4 3.7 44 166-214 19-62 (498)
360 PRK06762 hypothetical protein; 94.6 0.027 5.8E-07 53.6 3.0 22 192-213 3-24 (166)
361 KOG0743 AAA+-type ATPase [Post 94.5 0.57 1.2E-05 50.3 12.9 23 191-213 235-257 (457)
362 PRK09270 nucleoside triphospha 94.5 0.039 8.4E-07 55.6 4.3 24 190-213 32-55 (229)
363 cd01125 repA Hexameric Replica 94.5 0.25 5.3E-06 50.2 10.1 21 193-213 3-23 (239)
364 COG0467 RAD55 RecA-superfamily 94.5 0.088 1.9E-06 54.3 6.9 41 190-232 22-62 (260)
365 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.5 0.3 6.6E-06 49.0 10.6 23 192-214 49-71 (224)
366 KOG3864 Uncharacterized conser 94.5 0.0046 9.9E-08 58.3 -2.4 86 713-804 101-187 (221)
367 COG1875 NYN ribonuclease and A 94.4 0.11 2.3E-06 53.9 7.0 136 172-316 229-390 (436)
368 PRK06547 hypothetical protein; 94.4 0.033 7E-07 53.1 3.3 25 190-214 14-38 (172)
369 PRK14722 flhF flagellar biosyn 94.4 0.25 5.5E-06 52.9 10.2 88 192-287 138-226 (374)
370 cd03217 ABC_FeS_Assembly ABC-t 94.4 0.14 2.9E-06 50.5 7.8 23 192-214 27-49 (200)
371 PTZ00185 ATPase alpha subunit; 94.4 0.18 3.9E-06 55.4 9.0 96 192-287 190-300 (574)
372 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.17 3.7E-06 52.0 8.7 40 190-231 35-74 (259)
373 PF07726 AAA_3: ATPase family 94.4 0.029 6.2E-07 49.5 2.5 28 194-223 2-29 (131)
374 COG0488 Uup ATPase components 94.4 0.27 5.8E-06 55.5 10.8 135 193-331 350-511 (530)
375 cd03236 ABC_RNaseL_inhibitor_d 94.4 0.32 7E-06 49.8 10.6 23 192-214 27-49 (255)
376 cd00267 ABC_ATPase ABC (ATP-bi 94.3 0.13 2.8E-06 48.4 7.1 115 192-320 26-146 (157)
377 cd02028 UMPK_like Uridine mono 94.3 0.073 1.6E-06 51.2 5.4 21 193-213 1-21 (179)
378 TIGR00064 ftsY signal recognit 94.3 0.18 3.8E-06 52.1 8.5 92 190-287 71-165 (272)
379 cd03281 ABC_MSH5_euk MutS5 hom 94.3 0.28 6.1E-06 48.7 9.7 23 191-213 29-51 (213)
380 PRK12724 flagellar biosynthesi 94.3 0.19 4E-06 54.4 8.8 23 191-213 223-245 (432)
381 PRK13647 cbiO cobalt transport 94.3 0.41 8.8E-06 49.7 11.3 22 192-213 32-53 (274)
382 PRK08972 fliI flagellum-specif 94.3 0.13 2.9E-06 55.8 7.7 92 192-287 163-263 (444)
383 TIGR03574 selen_PSTK L-seryl-t 94.2 0.19 4E-06 51.5 8.6 20 194-213 2-21 (249)
384 PF07728 AAA_5: AAA domain (dy 94.2 0.072 1.6E-06 48.9 5.1 42 194-240 2-43 (139)
385 COG0396 sufC Cysteine desulfur 94.2 0.37 8.1E-06 46.9 9.7 61 263-323 149-213 (251)
386 TIGR03522 GldA_ABC_ATP gliding 94.2 0.37 8.1E-06 50.8 11.0 23 192-214 29-51 (301)
387 PRK03839 putative kinase; Prov 94.2 0.033 7.2E-07 53.8 2.8 22 193-214 2-23 (180)
388 COG4088 Predicted nucleotide k 94.2 0.08 1.7E-06 50.2 5.0 21 193-213 3-23 (261)
389 cd01121 Sms Sms (bacterial rad 94.2 0.12 2.7E-06 55.7 7.3 53 176-231 68-120 (372)
390 cd03278 ABC_SMC_barmotin Barmo 94.1 0.55 1.2E-05 46.0 11.3 20 193-212 24-43 (197)
391 cd03231 ABC_CcmA_heme_exporter 94.1 0.32 7E-06 47.9 9.7 23 192-214 27-49 (201)
392 COG1116 TauB ABC-type nitrate/ 94.1 0.53 1.1E-05 46.7 10.8 22 192-213 30-51 (248)
393 TIGR03771 anch_rpt_ABC anchore 94.1 0.51 1.1E-05 47.3 11.2 23 192-214 7-29 (223)
394 PRK11608 pspF phage shock prot 94.1 0.17 3.7E-06 53.9 8.1 45 168-213 7-51 (326)
395 cd03244 ABCC_MRP_domain2 Domai 94.1 0.4 8.6E-06 48.0 10.5 22 192-213 31-52 (221)
396 TIGR01360 aden_kin_iso1 adenyl 94.1 0.041 9E-07 53.5 3.3 24 190-213 2-25 (188)
397 PRK08927 fliI flagellum-specif 94.0 0.21 4.6E-06 54.5 8.7 92 192-287 159-259 (442)
398 PRK07721 fliI flagellum-specif 94.0 0.13 2.7E-06 56.7 7.0 92 192-286 159-258 (438)
399 TIGR03498 FliI_clade3 flagella 94.0 0.17 3.8E-06 55.1 8.0 92 192-287 141-241 (418)
400 PRK08149 ATP synthase SpaL; Va 94.0 0.15 3.2E-06 55.6 7.4 92 192-287 152-252 (428)
401 COG0464 SpoVK ATPases of the A 93.9 0.22 4.8E-06 56.8 9.2 131 190-346 275-424 (494)
402 PRK06217 hypothetical protein; 93.9 0.088 1.9E-06 51.0 5.2 22 193-214 3-24 (183)
403 cd01129 PulE-GspE PulE/GspE Th 93.9 0.15 3.3E-06 52.3 7.1 106 170-294 62-167 (264)
404 PRK00625 shikimate kinase; Pro 93.9 0.039 8.4E-07 52.6 2.5 21 193-213 2-22 (173)
405 cd01136 ATPase_flagellum-secre 93.9 0.32 7E-06 51.1 9.5 92 192-287 70-170 (326)
406 TIGR01420 pilT_fam pilus retra 93.9 0.18 3.8E-06 54.3 7.8 111 192-317 123-233 (343)
407 COG1428 Deoxynucleoside kinase 93.9 0.039 8.5E-07 52.9 2.4 24 191-214 4-27 (216)
408 cd03300 ABC_PotA_N PotA is an 93.8 0.37 8E-06 48.7 9.7 23 192-214 27-49 (232)
409 KOG0991 Replication factor C, 93.8 0.11 2.3E-06 50.2 5.2 44 167-213 27-70 (333)
410 PRK13650 cbiO cobalt transport 93.8 0.32 7E-06 50.6 9.5 22 192-213 34-55 (279)
411 PF00910 RNA_helicase: RNA hel 93.8 0.031 6.8E-07 48.6 1.6 21 194-214 1-21 (107)
412 PF06309 Torsin: Torsin; Inte 93.8 0.1 2.2E-06 45.9 4.7 47 168-214 26-76 (127)
413 cd01132 F1_ATPase_alpha F1 ATP 93.8 0.17 3.8E-06 51.4 7.1 101 193-297 71-183 (274)
414 PRK05917 DNA polymerase III su 93.8 1.5 3.3E-05 45.2 13.9 129 176-332 6-154 (290)
415 PF00006 ATP-synt_ab: ATP synt 93.8 0.1 2.3E-06 51.4 5.4 90 193-286 17-115 (215)
416 TIGR00390 hslU ATP-dependent p 93.8 0.11 2.3E-06 56.0 5.7 54 191-246 47-104 (441)
417 TIGR02974 phageshock_pspF psp 93.7 0.23 4.9E-06 52.9 8.3 45 169-214 1-45 (329)
418 KOG0924 mRNA splicing factor A 93.7 0.29 6.3E-06 54.5 9.0 118 192-315 372-511 (1042)
419 TIGR02314 ABC_MetN D-methionin 93.7 0.35 7.7E-06 51.7 9.8 23 192-214 32-54 (343)
420 PF08433 KTI12: Chromatin asso 93.7 0.092 2E-06 53.9 5.1 22 192-213 2-23 (270)
421 cd02025 PanK Pantothenate kina 93.7 0.037 8E-07 55.2 2.2 21 193-213 1-21 (220)
422 cd02024 NRK1 Nicotinamide ribo 93.7 0.039 8.5E-07 53.1 2.2 22 193-214 1-22 (187)
423 cd02023 UMPK Uridine monophosp 93.7 0.039 8.4E-07 54.3 2.3 21 193-213 1-21 (198)
424 TIGR00150 HI0065_YjeE ATPase, 93.7 0.061 1.3E-06 48.3 3.2 23 192-214 23-45 (133)
425 TIGR00968 3a0106s01 sulfate AB 93.7 0.4 8.7E-06 48.6 9.7 23 192-214 27-49 (237)
426 PRK05022 anaerobic nitric oxid 93.7 0.56 1.2E-05 53.5 11.8 48 166-214 186-233 (509)
427 PRK12597 F0F1 ATP synthase sub 93.6 0.11 2.4E-06 57.1 5.8 94 192-286 144-247 (461)
428 cd03213 ABCG_EPDR ABCG transpo 93.6 0.36 7.8E-06 47.2 8.9 22 192-213 36-57 (194)
429 KOG1532 GTPase XAB1, interacts 93.6 0.049 1.1E-06 53.7 2.7 63 190-252 18-89 (366)
430 COG0003 ArsA Predicted ATPase 93.6 0.089 1.9E-06 55.1 4.8 49 191-241 2-50 (322)
431 PF00154 RecA: recA bacterial 93.6 0.21 4.5E-06 52.2 7.5 90 190-287 52-142 (322)
432 TIGR02655 circ_KaiC circadian 93.6 0.28 6.1E-06 55.4 9.2 66 176-247 249-314 (484)
433 PRK10751 molybdopterin-guanine 93.6 0.065 1.4E-06 50.6 3.4 25 190-214 5-29 (173)
434 TIGR02322 phosphon_PhnN phosph 93.6 0.052 1.1E-06 52.4 2.9 23 192-214 2-24 (179)
435 PRK00131 aroK shikimate kinase 93.5 0.051 1.1E-06 52.1 2.8 23 191-213 4-26 (175)
436 PRK15064 ABC transporter ATP-b 93.5 0.67 1.5E-05 53.4 12.4 23 192-214 28-50 (530)
437 PRK14721 flhF flagellar biosyn 93.5 0.89 1.9E-05 49.7 12.4 23 191-213 191-213 (420)
438 PRK12723 flagellar biosynthesi 93.5 0.49 1.1E-05 51.2 10.4 89 190-287 173-265 (388)
439 PRK10923 glnG nitrogen regulat 93.5 1.7 3.6E-05 49.3 15.4 47 167-214 138-184 (469)
440 TIGR00554 panK_bact pantothena 93.5 0.099 2.1E-06 54.1 4.9 79 190-276 61-141 (290)
441 PRK13545 tagH teichoic acids e 93.5 0.76 1.6E-05 51.4 11.9 23 192-214 51-73 (549)
442 PRK11153 metN DL-methionine tr 93.4 0.42 9E-06 51.4 9.8 22 192-213 32-53 (343)
443 cd00071 GMPK Guanosine monopho 93.4 0.058 1.3E-06 49.3 2.8 21 194-214 2-22 (137)
444 PRK07594 type III secretion sy 93.4 0.16 3.5E-06 55.4 6.6 92 192-287 156-256 (433)
445 COG3640 CooC CO dehydrogenase 93.4 0.11 2.3E-06 50.6 4.6 42 193-235 2-43 (255)
446 TIGR01359 UMP_CMP_kin_fam UMP- 93.4 0.046 9.9E-07 53.0 2.3 21 193-213 1-21 (183)
447 PRK13537 nodulation ABC transp 93.4 0.77 1.7E-05 48.5 11.6 23 192-214 34-56 (306)
448 PRK12678 transcription termina 93.4 0.14 3.1E-06 56.8 6.1 91 192-287 417-514 (672)
449 PRK12727 flagellar biosynthesi 93.4 0.19 4.2E-06 55.7 7.2 23 191-213 350-372 (559)
450 TIGR03411 urea_trans_UrtD urea 93.4 0.79 1.7E-05 46.6 11.4 23 192-214 29-51 (242)
451 PRK09519 recA DNA recombinatio 93.4 0.27 5.8E-06 57.6 8.6 102 177-286 46-148 (790)
452 KOG4252 GTP-binding protein [S 93.4 0.22 4.8E-06 45.7 6.2 37 192-229 21-57 (246)
453 PRK06793 fliI flagellum-specif 93.4 0.17 3.6E-06 55.3 6.6 123 192-319 157-291 (432)
454 PRK10463 hydrogenase nickel in 93.4 0.25 5.4E-06 50.8 7.5 92 190-287 103-195 (290)
455 PRK05688 fliI flagellum-specif 93.4 0.24 5.2E-06 54.3 7.7 92 192-287 169-269 (451)
456 PRK09280 F0F1 ATP synthase sub 93.4 0.23 5E-06 54.5 7.6 94 192-286 145-248 (463)
457 PRK05922 type III secretion sy 93.4 0.21 4.6E-06 54.5 7.3 92 192-287 158-258 (434)
458 PF03205 MobB: Molybdopterin g 93.3 0.076 1.7E-06 48.6 3.4 39 192-231 1-39 (140)
459 TIGR03263 guanyl_kin guanylate 93.3 0.062 1.3E-06 51.9 3.0 22 192-213 2-23 (180)
460 PRK15453 phosphoribulokinase; 93.3 0.44 9.5E-06 48.6 8.9 24 190-213 4-27 (290)
461 PRK09099 type III secretion sy 93.3 0.19 4.1E-06 55.1 6.9 93 192-287 164-264 (441)
462 TIGR02546 III_secr_ATP type II 93.2 0.45 9.8E-06 52.3 9.8 92 192-287 146-246 (422)
463 PRK11144 modC molybdate transp 93.2 0.75 1.6E-05 49.6 11.4 23 192-214 25-47 (352)
464 COG0563 Adk Adenylate kinase a 93.2 0.058 1.3E-06 51.6 2.5 22 193-214 2-23 (178)
465 TIGR03575 selen_PSTK_euk L-ser 93.2 0.22 4.7E-06 52.7 7.0 21 194-214 2-22 (340)
466 cd02021 GntK Gluconate kinase 93.2 0.057 1.2E-06 50.4 2.4 22 193-214 1-22 (150)
467 COG0714 MoxR-like ATPases [Gen 93.2 0.14 3E-06 54.9 5.6 69 167-245 24-92 (329)
468 PRK05439 pantothenate kinase; 93.1 0.094 2E-06 54.7 4.1 80 190-277 85-166 (311)
469 PRK10416 signal recognition pa 93.1 0.44 9.6E-06 50.3 9.1 25 190-214 113-137 (318)
470 PRK14723 flhF flagellar biosyn 93.1 0.54 1.2E-05 54.9 10.5 24 191-214 185-208 (767)
471 PRK13947 shikimate kinase; Pro 93.1 0.06 1.3E-06 51.5 2.5 21 193-213 3-23 (171)
472 PF00625 Guanylate_kin: Guanyl 93.1 0.076 1.6E-06 51.4 3.2 35 192-228 3-37 (183)
473 TIGR02142 modC_ABC molybdenum 93.1 0.75 1.6E-05 49.7 11.2 23 192-214 24-46 (354)
474 PRK07196 fliI flagellum-specif 93.1 0.24 5.2E-06 54.1 7.3 92 192-287 156-256 (434)
475 PRK00889 adenylylsulfate kinas 93.1 0.084 1.8E-06 50.7 3.5 24 191-214 4-27 (175)
476 PRK12726 flagellar biosynthesi 93.1 0.89 1.9E-05 48.5 11.1 90 190-287 205-296 (407)
477 COG1643 HrpA HrpA-like helicas 93.0 0.45 9.7E-06 56.3 9.8 136 173-315 52-206 (845)
478 cd00227 CPT Chloramphenicol (C 93.0 0.066 1.4E-06 51.4 2.6 23 192-214 3-25 (175)
479 PRK11000 maltose/maltodextrin 93.0 0.7 1.5E-05 50.2 10.8 23 192-214 30-52 (369)
480 PRK05986 cob(I)alamin adenolsy 93.0 0.59 1.3E-05 44.8 8.9 120 192-314 23-158 (191)
481 PRK13409 putative ATPase RIL; 93.0 0.64 1.4E-05 53.9 11.0 126 192-320 366-520 (590)
482 cd02020 CMPK Cytidine monophos 92.9 0.068 1.5E-06 49.5 2.5 21 193-213 1-21 (147)
483 COG2019 AdkA Archaeal adenylat 92.9 0.096 2.1E-06 48.0 3.2 23 191-213 4-26 (189)
484 KOG2859 DNA repair protein, me 92.9 1.1 2.4E-05 42.9 10.2 108 192-299 39-150 (293)
485 cd02029 PRK_like Phosphoribulo 92.9 0.28 6.1E-06 49.5 6.8 83 193-277 1-85 (277)
486 cd03299 ABC_ModC_like Archeal 92.9 0.82 1.8E-05 46.3 10.5 23 192-214 26-48 (235)
487 PF06745 KaiC: KaiC; InterPro 92.9 0.12 2.6E-06 52.0 4.4 43 190-233 18-60 (226)
488 PLN02318 phosphoribulokinase/u 92.8 0.13 2.8E-06 57.6 4.8 24 190-213 64-87 (656)
489 PRK13949 shikimate kinase; Pro 92.8 0.074 1.6E-06 50.6 2.6 21 193-213 3-23 (169)
490 PRK03846 adenylylsulfate kinas 92.8 0.088 1.9E-06 51.7 3.3 24 190-213 23-46 (198)
491 PRK14738 gmk guanylate kinase; 92.8 0.095 2.1E-06 51.8 3.5 24 190-213 12-35 (206)
492 PRK06936 type III secretion sy 92.8 0.45 9.8E-06 52.0 8.8 92 192-287 163-263 (439)
493 cd00820 PEPCK_HprK Phosphoenol 92.8 0.1 2.2E-06 44.8 3.1 21 192-212 16-36 (107)
494 PRK10078 ribose 1,5-bisphospho 92.7 0.087 1.9E-06 51.2 3.1 23 192-214 3-25 (186)
495 cd03369 ABCC_NFT1 Domain 2 of 92.7 1.2 2.6E-05 44.0 11.3 22 192-213 35-56 (207)
496 cd03282 ABC_MSH4_euk MutS4 hom 92.7 1.1 2.4E-05 44.0 10.8 22 192-213 30-51 (204)
497 cd00984 DnaB_C DnaB helicase C 92.7 0.44 9.6E-06 48.5 8.4 52 192-246 14-65 (242)
498 PF13481 AAA_25: AAA domain; P 92.6 0.12 2.5E-06 50.7 3.8 40 193-232 34-81 (193)
499 PRK00300 gmk guanylate kinase; 92.6 0.082 1.8E-06 52.3 2.8 23 192-214 6-28 (205)
500 PRK05201 hslU ATP-dependent pr 92.6 0.18 3.9E-06 54.3 5.4 78 167-246 15-107 (443)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-82 Score=735.05 Aligned_cols=773 Identities=30% Similarity=0.452 Sum_probs=591.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhhHHHHHhhhhc
Q 045150 2 VDAVVSFVVQRLGDYLIQEAKTLGGVRDEVESLKKELEWMQCFVKDAEAKQAGNDLIRQWVSDIRDIAYDAEDVLDKYML 81 (841)
Q Consensus 2 a~~~v~~~~~kl~~~l~~e~~~~~~v~~~~~~l~~~l~~i~~~l~~~~~~~~~~~~~~~wl~~lr~~~yd~eD~ld~~~~ 81 (841)
|++.++..++|+.+++.+++....++++.+..|+++|..++++++|+++++.....++.|.+.+++++|++||.++.|..
T Consensus 1 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred CCeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778889999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccccchhhhh--hhhhcccccCccchhhhhhHHHHHHHHHHHHHHhhhhhhcCCccccCCchhhhhHHHHhhhhhh
Q 045150 82 SVTPKKRQRLFAYS--IKELNLFSKGKEKVSLYSIGKEIETLNKRLGEVSRRCESYGLQNIIDKSEAEKHELHILKQLRR 159 (841)
Q Consensus 82 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (841)
.....+.......+ .....++ ..+.+..+..+..+.+|+.++.+..+.++.+........... ....+.
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~-----~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~----~~~~~e 151 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCL-----CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLD----PREKVE 151 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhh-----hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccccc----chhhcc
Confidence 76543221111101 1111111 156678888899999999999999999987652222111000 112233
Q ss_pred ccccCCCCCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCcc-ccCCCCcEEEEEeCCccCHHHH
Q 045150 160 VSWFDVEENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSD-VKNKFECCAWVSVSQDYQFQYL 238 (841)
Q Consensus 160 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~ 238 (841)
+.+..+... ||.+..++++.+.|..++. .+++|+||||+||||||++++|+.. ++.+||.++||+||++|+..++
T Consensus 152 ~~~~~~~~~-VG~e~~~~kl~~~L~~d~~---~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~i 227 (889)
T KOG4658|consen 152 TRPIQSESD-VGLETMLEKLWNRLMEDDV---GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKI 227 (889)
T ss_pred cCCCCcccc-ccHHHHHHHHHHHhccCCC---CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhH
Confidence 444444555 9999999999999998764 8999999999999999999999977 9999999999999999999999
Q ss_pred HHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchHHhh
Q 045150 239 LLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNREVAE 318 (841)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (841)
+++|++.++..... ......++++..|.++|++|||||||||||+..+|+.+..++|...+||+|++|||++.|+.
T Consensus 228 q~~Il~~l~~~~~~----~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~ 303 (889)
T KOG4658|consen 228 QQTILERLGLLDEE----WEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCG 303 (889)
T ss_pred HHHHHHHhccCCcc----cchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhh
Confidence 99999999874322 22233478999999999999999999999999999999999999989999999999999999
Q ss_pred cCCCcceeEecCCCChhHHHHHHHhHhcCCCCC-CchhHHHHHHHHHHcCCCchHHHHHhhhhcCC-ChhhHH-------
Q 045150 319 RSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNR-EKGLEKLGREMVEKCDGLPLAIVVLGGLLSTK-TPQEWR------- 389 (841)
Q Consensus 319 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~-~~~~w~------- 389 (841)
.+.+....++++.|+++|||+||++.+|..... .+.++++|++|+++|+|+|||+.++|+.|+.+ +.++|+
T Consensus 304 ~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~ 383 (889)
T KOG4658|consen 304 RAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLK 383 (889)
T ss_pred ccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccc
Confidence 944445899999999999999999999987443 56689999999999999999999999999999 788998
Q ss_pred ------------------------------HHHHhhcCCCCCcccChhHHHHHHHHcCCcCC-CCCCCHHHHHHhHHHHH
Q 045150 390 ------------------------------LCFLYLSLFPEDFEINVEKLIRLFVAEGFVPQ-SEDRTMEEVAKDNFDEL 438 (841)
Q Consensus 390 ------------------------------~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~-~~~~~~e~~~~~~~~~L 438 (841)
.||+|||+||+||.|++++|+.+|+||||+.+ ..+.++++.|++|+.+|
T Consensus 384 s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 384 SSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred ccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence 79999999999999999999999999999988 45789999999999999
Q ss_pred HHhhcccccccc---C----------------------------CC-------CCCccCccceEeeeeecCCCeeeeccC
Q 045150 439 INRSLIQAEERS---K----------------------------NP-------TPSSVQSSCRRQAIYSETPSFFWLHHS 480 (841)
Q Consensus 439 ~~~~ll~~~~~~---~----------------------------~~-------~~~~~~~~~r~l~i~~~~~~~~~~~~~ 480 (841)
++++|++..... . .. +....+..+|+++++.+..........
T Consensus 464 V~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~ 543 (889)
T KOG4658|consen 464 VRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE 543 (889)
T ss_pred HHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCC
Confidence 999999987632 1 00 011223457899888665555553447
Q ss_pred CCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcc
Q 045150 481 NSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSS 560 (841)
Q Consensus 481 ~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~ 560 (841)
++++++|.+..+... .......+|..++.||||||++|.. +. ++|..|++|.|||||+|+++ .+..+|..
T Consensus 544 ~~~L~tLll~~n~~~--l~~is~~ff~~m~~LrVLDLs~~~~-----l~--~LP~~I~~Li~LryL~L~~t-~I~~LP~~ 613 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDW--LLEISGEFFRSLPLLRVLDLSGNSS-----LS--KLPSSIGELVHLRYLDLSDT-GISHLPSG 613 (889)
T ss_pred CCccceEEEeecchh--hhhcCHHHHhhCcceEEEECCCCCc-----cC--cCChHHhhhhhhhcccccCC-CccccchH
Confidence 789999999988520 0235567899999999999999874 55 89999999999999999999 89999999
Q ss_pred cCCCCCCCeeecC-C-cccccCccccccccccceeccccc----ccCCccccccccccccccc---chhccccccccCCC
Q 045150 561 IFNLPGLQTLDLS-R-CIVQLPPETDMMRELRHLIGKLIG----TLPIENLTNLQTLKYVRCK---SWIRVNTAKLVNLR 631 (841)
Q Consensus 561 i~~L~~L~~L~L~-~-~~~~lp~~~~~L~~L~~L~~~~~~----~~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~ 631 (841)
+++|..|.+||+. + ....+|.....|++||+|...... ...++.+.+|++|....+. ......+..+++|.
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLR 693 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHH
Confidence 9999999999999 5 444455666669999999543322 1224555555555544443 32334455555555
Q ss_pred ceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecc-ccCCCCccccc
Q 045150 632 ELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTG-RMTTLPKDMHV 710 (841)
Q Consensus 632 ~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~-~~~~~p~~~~~ 710 (841)
++...-.... ....... ..+..+.+|+.|.+.+|............. .....++++..+.+.. +....+.|...
T Consensus 694 ~~~~~l~~~~-~~~~~~~-~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~---~~~~~f~~l~~~~~~~~~~~r~l~~~~f 768 (889)
T KOG4658|consen 694 SLLQSLSIEG-CSKRTLI-SSLGSLGNLEELSILDCGISEIVIEWEESL---IVLLCFPNLSKVSILNCHMLRDLTWLLF 768 (889)
T ss_pred HHhHhhhhcc-cccceee-cccccccCcceEEEEcCCCchhhccccccc---chhhhHHHHHHHHhhccccccccchhhc
Confidence 3322211000 1122333 677889999999999996543211111111 1111133444444443 23445666544
Q ss_pred cCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEcc--
Q 045150 711 LLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEE-- 788 (841)
Q Consensus 711 l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~-- 788 (841)
+++|+.|.+..|...+.+++....+..+..+.+..+.+.+ .......++|+++..+.+..-. +.+|.++.
T Consensus 769 -~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~-----l~~~~~l~~l~~i~~~~l~~~~--l~~~~ve~~p 840 (889)
T KOG4658|consen 769 -APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG-----LRMLCSLGGLPQLYWLPLSFLK--LEELIVEECP 840 (889)
T ss_pred -cCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc-----ceeeecCCCCceeEecccCccc--hhheehhcCc
Confidence 4999999999998888888888888888887776654333 2245566778888888887654 77777666
Q ss_pred --Ccccccccccccccc-CCC-CCCcc--cccc
Q 045150 789 --RAMPMLRGLKIPSDI-PNL-NIPER--LRSI 815 (841)
Q Consensus 789 --~~~p~L~~L~l~~~c-~~L-~lp~~--l~~l 815 (841)
+.||.+.++.+. +| +++ .+|.+ ++.+
T Consensus 841 ~l~~~P~~~~~~i~-~~~~~~~~~~~~~~~~~v 872 (889)
T KOG4658|consen 841 KLGKLPLLSTLTIV-GCEEKLKEYPDGEWLEGV 872 (889)
T ss_pred ccccCcccccccee-ccccceeecCCccceeeE
Confidence 789999999999 87 777 88887 5555
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.4e-53 Score=516.47 Aligned_cols=591 Identities=19% Similarity=0.280 Sum_probs=381.2
Q ss_pred CCCCCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe---CCc--------
Q 045150 164 DVEENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV---SQD-------- 232 (841)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~-------- 232 (841)
...+++|||++.++++..+|..+.. ++++|+|+||||+||||||+.+|+ ++..+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~-~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESE-EVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccC-ceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccc
Confidence 3456799999999999998865544 789999999999999999999999 78889999888742 111
Q ss_pred ---cC-HHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEE
Q 045150 233 ---YQ-FQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVI 308 (841)
Q Consensus 233 ---~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~il 308 (841)
++ ...++++++.++..... ... .. ...+++.|++||+||||||||+...|+.+.......++||+||
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~-----~~~---~~-~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKD-----IKI---YH-LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCC-----ccc---CC-HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEE
Confidence 11 12344555555433211 111 11 1457788999999999999999999999988777778899999
Q ss_pred EEecchHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHhhhhcCCChhhH
Q 045150 309 ITTRNREVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLGGLLSTKTPQEW 388 (841)
Q Consensus 309 vTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~~w 388 (841)
||||++.++..++.. ++|+++.+++++||+||+.+||+...++.++.+++++|+++|+|+|||++++|++|+.++..+|
T Consensus 329 iTTrd~~vl~~~~~~-~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W 407 (1153)
T PLN03210 329 VITKDKHFLRAHGID-HIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDW 407 (1153)
T ss_pred EEeCcHHHHHhcCCC-eEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHH
Confidence 999999999876554 7999999999999999999999876666778999999999999999999999999999988889
Q ss_pred H-------------------------------HHHHhhcCCCCCcccChhHHHHHHHHcCCcCCCCCCCHHHHHHhHHHH
Q 045150 389 R-------------------------------LCFLYLSLFPEDFEINVEKLIRLFVAEGFVPQSEDRTMEEVAKDNFDE 437 (841)
Q Consensus 389 ~-------------------------------~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~~~~ 437 (841)
+ .||+++|.|+.+..+ ..+..|++.+... ++..++.
T Consensus 408 ~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~----------~~~~l~~ 474 (1153)
T PLN03210 408 MDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLD----------VNIGLKN 474 (1153)
T ss_pred HHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCC----------chhChHH
Confidence 7 799999999988644 3467777776542 2345888
Q ss_pred HHHhhccccccccCC--------------CCC---------------------CccCccceEeeeeecCCCeeeecc---
Q 045150 438 LINRSLIQAEERSKN--------------PTP---------------------SSVQSSCRRQAIYSETPSFFWLHH--- 479 (841)
Q Consensus 438 L~~~~ll~~~~~~~~--------------~~~---------------------~~~~~~~r~l~i~~~~~~~~~~~~--- 479 (841)
|+++||++....... ... ......++.+++............
T Consensus 475 L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF 554 (1153)
T PLN03210 475 LVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAF 554 (1153)
T ss_pred HHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHH
Confidence 999999887543220 000 001123444444433222222111
Q ss_pred -CCCceeeEEEeecccccc--cccchhHHhccC-ceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCcc
Q 045150 480 -SNSLSRSLLFFNENVTLF--EERDLAPLFKRF-LLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIR 555 (841)
Q Consensus 480 -~~~~lr~L~l~~~~~~~~--~~~~~~~~~~~~-~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~ 555 (841)
.+.+|+.|.+..+..... ..-.++..|..+ ..||.|++.++. ++ .+|..+ .+.+|++|+|++| .+.
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~------l~--~lP~~f-~~~~L~~L~L~~s-~l~ 624 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP------LR--CMPSNF-RPENLVKLQMQGS-KLE 624 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC------CC--CCCCcC-CccCCcEEECcCc-ccc
Confidence 566677776654321000 000122233333 357777777776 66 677665 4677777888777 677
Q ss_pred ccCcccCCCCCCCeeecC-C-cccccCccccccccccceeccc-----ccccCCccccccccccccccc--chhcccccc
Q 045150 556 DFPSSIFNLPGLQTLDLS-R-CIVQLPPETDMMRELRHLIGKL-----IGTLPIENLTNLQTLKYVRCK--SWIRVNTAK 626 (841)
Q Consensus 556 ~lp~~i~~L~~L~~L~L~-~-~~~~lp~~~~~L~~L~~L~~~~-----~~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~ 626 (841)
.+|..+..+++|++|+|+ + ++..+| .+..+++|++|.... ..+..++++++|+.|++.+|. ...|..+ +
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 777777777788888887 4 344555 466777777773311 223346777777777777765 3344333 6
Q ss_pred ccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCC---------------------
Q 045150 627 LVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQP--------------------- 685 (841)
Q Consensus 627 l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~--------------------- 685 (841)
+++|+.|++++|... ..++ . ...+|+.|++++|.+.. .|... .++.+..
T Consensus 703 l~sL~~L~Lsgc~~L----~~~p-~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 703 LKSLYRLNLSGCSRL----KSFP-D---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred CCCCCEEeCCCCCCc----cccc-c---ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchh
Confidence 777777777766421 1111 1 13467777777665432 22211 0111110
Q ss_pred -CCCCcccceeEeccc--cCCCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccC-CCCCcc------
Q 045150 686 -LSHCQRLVDLRLTGR--MTTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRD-SGDPYH------ 755 (841)
Q Consensus 686 -l~~~~~L~~L~L~~~--~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l-~~~~~~------ 755 (841)
...+++|+.|++++| ...+|.++..+ ++|+.|+|++|......|..+ ++++|+.|+|++|.. ...+..
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L-~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~ 850 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNL-HKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISD 850 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCC-CCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCE
Confidence 012357888888775 33477777776 888888888875333333333 677777777776521 110000
Q ss_pred -------ccceEEcCCCcccccceeccccccCceEEEEccCccccccccccccccCCC
Q 045150 756 -------EKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIPNL 806 (841)
Q Consensus 756 -------~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~~L 806 (841)
...++.....+++|+.|++++|+ +++.++.....+++|+.|+++ +|++|
T Consensus 851 L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~-~L~~l~~~~~~L~~L~~L~l~-~C~~L 906 (1153)
T PLN03210 851 LNLSRTGIEEVPWWIEKFSNLSFLDMNGCN-NLQRVSLNISKLKHLETVDFS-DCGAL 906 (1153)
T ss_pred eECCCCCCccChHHHhcCCCCCEEECCCCC-CcCccCcccccccCCCeeecC-CCccc
Confidence 00111122345556666666655 555555555555566666666 66555
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8.4e-40 Score=345.09 Aligned_cols=247 Identities=40% Similarity=0.661 Sum_probs=200.3
Q ss_pred cCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccc
Q 045150 172 FEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISS 251 (841)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 251 (841)
|+.++++|.+.|..... +.++|+|+||||+||||||+++|++..++.+|+.++||.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~-~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSN-EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTT-SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCC-CeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccc
Confidence 67789999999998553 78999999999999999999999976699999999999999999999999999999987632
Q ss_pred cccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchHHhhcCCCcceeEecCC
Q 045150 252 AEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNREVAERSDEKTYVHKLRF 331 (841)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~~l~~ 331 (841)
.. ....+..+....+++.|+++++||||||||+...|+.+...++....|++||||||+..++..+......+++++
T Consensus 80 ~~---~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 80 SI---SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp TS---SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cc---ccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 21 133566789999999999999999999999999999999888887789999999999998877654348999999
Q ss_pred CChhHHHHHHHhHhcCCC-CCCchhHHHHHHHHHHcCCCchHHHHHhhhhcCC-ChhhHH--------------------
Q 045150 332 LRGDESWLLFCEKAFRGT-NREKGLEKLGREMVEKCDGLPLAIVVLGGLLSTK-TPQEWR-------------------- 389 (841)
Q Consensus 332 L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~-~~~~w~-------------------- 389 (841)
|++++|++||++.++... ...+...+.+++|+++|+|+|||++++|++|+.+ +..+|+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999998766 2355667889999999999999999999999665 666676
Q ss_pred ----------------HHHHhhcCCCCCcccChhHHHHHHHHcCCcCCC
Q 045150 390 ----------------LCFLYLSLFPEDFEINVEKLIRLFVAEGFVPQS 422 (841)
Q Consensus 390 ----------------~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~ 422 (841)
.||+||++||+++.|+++.++++|++|||+...
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 899999999999999999999999999999653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=4.1e-22 Score=246.18 Aligned_cols=308 Identities=19% Similarity=0.206 Sum_probs=162.7
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCc
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPS 559 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~ 559 (841)
.+++|+.|.+.++... ...+..+.++++|++|+|++|. +.+ .+|..++++++|++|+|++|.....+|.
T Consensus 162 ~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~n~------l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 230 (968)
T PLN00113 162 SFSSLKVLDLGGNVLV----GKIPNSLTNLTSLEFLTLASNQ------LVG-QIPRELGQMKSLKWIYLGYNNLSGEIPY 230 (968)
T ss_pred cCCCCCEEECccCccc----ccCChhhhhCcCCCeeeccCCC------CcC-cCChHHcCcCCccEEECcCCccCCcCCh
Confidence 4555666665555432 1233445556666666666665 433 4555666666666666666633345566
Q ss_pred ccCCCCCCCeeecC-Cccc-ccCccccccccccceec---cccc--ccCCccccccccccccccc--chhccccccccCC
Q 045150 560 SIFNLPGLQTLDLS-RCIV-QLPPETDMMRELRHLIG---KLIG--TLPIENLTNLQTLKYVRCK--SWIRVNTAKLVNL 630 (841)
Q Consensus 560 ~i~~L~~L~~L~L~-~~~~-~lp~~~~~L~~L~~L~~---~~~~--~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L 630 (841)
.++++++|++|+++ |++. .+|..+.++++|++|.. ...+ +..+.++++|+.|++++|. +..+..+.++++|
T Consensus 231 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence 66666666666666 4433 35556666666666632 1211 2225566666666666655 3445555666666
Q ss_pred CceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCC---------------CCCCCccccee
Q 045150 631 RELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQ---------------PLSHCQRLVDL 695 (841)
Q Consensus 631 ~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~---------------~l~~~~~L~~L 695 (841)
+.|++.+|... ...+ ..+..+++|+.|++++|.+.+..|..+..++.+. .+..+++|+.|
T Consensus 311 ~~L~l~~n~~~----~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 311 EILHLFSNNFT----GKIP-VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred cEEECCCCccC----CcCC-hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 66666655422 1112 5566667777777777766554443222211110 01122344444
Q ss_pred Eecccc--CCCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCccccccee
Q 045150 696 RLTGRM--TTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILL 773 (841)
Q Consensus 696 ~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~ 773 (841)
++.+|. ..+|.++..+ ++|+.|+|++|.+++..+..+..+++|+.|++++|.+++.. ......+++|+.|+
T Consensus 386 ~l~~n~l~~~~p~~~~~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~~l~~L~~L~ 458 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGAC-RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI------NSRKWDMPSLQMLS 458 (968)
T ss_pred ECcCCEecccCCHHHhCC-CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc------ChhhccCCCCcEEE
Confidence 444432 1244444443 55666666666555555555566666666666655544321 11123577888888
Q ss_pred ccccccCceEEEEccCccccccccccccccCCC-CCCcccc
Q 045150 774 LDAVEVGIVEWQVEERAMPMLRGLKIPSDIPNL-NIPERLR 813 (841)
Q Consensus 774 l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~~L-~lp~~l~ 813 (841)
+++|. +.........+++|+.|+++ +|.-. .+|..+.
T Consensus 459 L~~n~--~~~~~p~~~~~~~L~~L~ls-~n~l~~~~~~~~~ 496 (968)
T PLN00113 459 LARNK--FFGGLPDSFGSKRLENLDLS-RNQFSGAVPRKLG 496 (968)
T ss_pred CcCce--eeeecCcccccccceEEECc-CCccCCccChhhh
Confidence 88776 43322222245778888888 66443 6665443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.4e-21 Score=241.48 Aligned_cols=329 Identities=20% Similarity=0.176 Sum_probs=252.1
Q ss_pred ccceEeeeeecCCCe-eeecc-CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhc
Q 045150 460 SSCRRQAIYSETPSF-FWLHH-SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKL 537 (841)
Q Consensus 460 ~~~r~l~i~~~~~~~-~~~~~-~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i 537 (841)
..++.+.+..+.... ++... .+++|+.|.+.++... ...+..+.++++|++|+|++|. +.+ .+|..+
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~n~------l~~-~~p~~l 232 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV----GQIPRELGQMKSLKWIYLGYNN------LSG-EIPYEI 232 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc----CcCChHHcCcCCccEEECcCCc------cCC-cCChhH
Confidence 467788887554332 22222 7889999999888753 2456778999999999999998 665 788899
Q ss_pred cccCcceeeecCCCcCccccCcccCCCCCCCeeecC-Cccc-ccCccccccccccceec---cccc--ccCCcccccccc
Q 045150 538 GKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIV-QLPPETDMMRELRHLIG---KLIG--TLPIENLTNLQT 610 (841)
Q Consensus 538 ~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~-~lp~~~~~L~~L~~L~~---~~~~--~~~i~~l~~L~~ 610 (841)
+++++|++|+|++|.....+|..++++++|++|+++ |.+. .+|..+.++++|++|.. .... +..+.++++|+.
T Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 999999999999995556889999999999999999 6554 58889999999999943 2222 333788999999
Q ss_pred ccccccc--chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccC-----
Q 045150 611 LKYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASL----- 683 (841)
Q Consensus 611 L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l----- 683 (841)
|++.+|. +..+..+..+++|+.|++++|... ...+ ..+..+++|+.|++++|.+.+..|..+...+.+
T Consensus 313 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~p-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS----GEIP-KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred EECCCCccCCcCChhHhcCCCCCEEECcCCCCc----CcCC-hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 9999887 566778899999999999988643 1223 778889999999999998877666544332211
Q ss_pred ----------CCCCCCcccceeEeccccC--CCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCC
Q 045150 684 ----------QPLSHCQRLVDLRLTGRMT--TLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSG 751 (841)
Q Consensus 684 ----------~~l~~~~~L~~L~L~~~~~--~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 751 (841)
..+..+++|+.|++++|.. .+|..+..+ ++|+.|+|++|.+++..+..+..+++|+.|+|++|.+.+
T Consensus 388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC-CCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence 1245678999999998743 478777777 999999999999988888888899999999999987654
Q ss_pred CCccccceEEcCCCcccccceeccccccCce-EEEEccCccccccccccccccCCC-CCCcccccc
Q 045150 752 DPYHEKKLSCRAEGFPLLEILLLDAVEVGIV-EWQVEERAMPMLRGLKIPSDIPNL-NIPERLRSI 815 (841)
Q Consensus 752 ~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~-~~~~~~~~~p~L~~L~l~~~c~~L-~lp~~l~~l 815 (841)
.... .-..++|+.|++++|. +. .++.....+++|+.|+++ +|.-. .+|..+.++
T Consensus 467 ~~p~-------~~~~~~L~~L~ls~n~--l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~p~~~~~l 522 (968)
T PLN00113 467 GLPD-------SFGSKRLENLDLSRNQ--FSGAVPRKLGSLSELMQLKLS-ENKLSGEIPDELSSC 522 (968)
T ss_pred ecCc-------ccccccceEEECcCCc--cCCccChhhhhhhccCEEECc-CCcceeeCChHHcCc
Confidence 3211 1135789999999997 54 455556688999999999 77544 777655443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2.1e-23 Score=218.70 Aligned_cols=307 Identities=20% Similarity=0.166 Sum_probs=231.5
Q ss_pred cceEeeeeecCCCeeeecc-CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccc
Q 045150 461 SCRRQAIYSETPSFFWLHH-SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGK 539 (841)
Q Consensus 461 ~~r~l~i~~~~~~~~~~~~-~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~ 539 (841)
++.|+++..+....+.-+. .++.||++.+..+...+ +.++.-+-++..|.+||||+|+ ++ +.|..+.+
T Consensus 56 kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKn---sGiP~diF~l~dLt~lDLShNq------L~--EvP~~LE~ 124 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKN---SGIPTDIFRLKDLTILDLSHNQ------LR--EVPTNLEY 124 (1255)
T ss_pred hhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccccc---CCCCchhcccccceeeecchhh------hh--hcchhhhh
Confidence 4556665544433332222 78889999988776532 3455556679999999999999 88 89999999
Q ss_pred cCcceeeecCCCcCccccCcccC-CCCCCCeeecC-CcccccCccccccccccceeccccc-----ccCCcccccccccc
Q 045150 540 LIHLKYLGIRGTTFIRDFPSSIF-NLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIG-----TLPIENLTNLQTLK 612 (841)
Q Consensus 540 L~~L~~L~L~~~~~~~~lp~~i~-~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~-----~~~i~~l~~L~~L~ 612 (841)
-+++-+|+||+| .|..+|.++. +|..|-+|||| +.+..+|+.+..|.+|+.|..+... ...+-.|++|++|.
T Consensus 125 AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 125 AKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH 203 (1255)
T ss_pred hcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence 999999999999 8999997754 89999999999 7788899999999999998432211 11255677788888
Q ss_pred ccccc---chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCC
Q 045150 613 YVRCK---SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHC 689 (841)
Q Consensus 613 l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~ 689 (841)
+++.+ ...|.++..+.||+.++++.|... .++ +.+.++.+|+.|+|++|.++.... .....
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-----~vP-ecly~l~~LrrLNLS~N~iteL~~----------~~~~W 267 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-----IVP-ECLYKLRNLRRLNLSGNKITELNM----------TEGEW 267 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhccccccCCC-----cch-HHHhhhhhhheeccCcCceeeeec----------cHHHH
Confidence 88776 567888999999999999887632 222 888899999999999985432110 12234
Q ss_pred cccceeEecccc-CCCCccccccCCCccEEEEEeccCCC-CChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcc
Q 045150 690 QRLVDLRLTGRM-TTLPKDMHVLLPNLECLSLKVVLPEE-NPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFP 767 (841)
Q Consensus 690 ~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~ 767 (841)
.+|+.|+++.|- ..+|..+..+ +.|+.|.+.+|+++- -.|+.+|+|.+|+.+..++|++.-. +.+...++
T Consensus 268 ~~lEtLNlSrNQLt~LP~avcKL-~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV-------PEglcRC~ 339 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLTVLPDAVCKL-TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV-------PEGLCRCV 339 (1255)
T ss_pred hhhhhhccccchhccchHHHhhh-HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC-------chhhhhhH
Confidence 578888888874 4588888887 889999998887753 3566788899999988888765422 22345688
Q ss_pred cccceeccccccCceEEEEccCccccccccccccccCCC
Q 045150 768 LLEILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIPNL 806 (841)
Q Consensus 768 ~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~~L 806 (841)
+|+.|.|++|. +-.+|....-+|.|+.|+++ ++|+|
T Consensus 340 kL~kL~L~~Nr--LiTLPeaIHlL~~l~vLDlr-eNpnL 375 (1255)
T KOG0444|consen 340 KLQKLKLDHNR--LITLPEAIHLLPDLKVLDLR-ENPNL 375 (1255)
T ss_pred HHHHhcccccc--eeechhhhhhcCCcceeecc-CCcCc
Confidence 89999998886 77787777788999999999 88888
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.7e-23 Score=217.87 Aligned_cols=319 Identities=18% Similarity=0.128 Sum_probs=246.7
Q ss_pred ccceEeeeeecCCCeeeecc-CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhcc
Q 045150 460 SSCRRQAIYSETPSFFWLHH-SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLG 538 (841)
Q Consensus 460 ~~~r~l~i~~~~~~~~~~~~-~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~ 538 (841)
..++++.+.-.....+|.+. .+.+|..|.+..+... ....-++.++.||.+++..|+ +++..+|..|.
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-----~vhGELs~Lp~LRsv~~R~N~------LKnsGiP~diF 100 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-----SVHGELSDLPRLRSVIVRDNN------LKNSGIPTDIF 100 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-----hhhhhhccchhhHHHhhhccc------cccCCCCchhc
Confidence 34556666544455555444 6677777777666543 222346778889999999998 88778999999
Q ss_pred ccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccc-cccccccceec---ccc-cccCCcccccccccc
Q 045150 539 KLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPET-DMMRELRHLIG---KLI-GTLPIENLTNLQTLK 612 (841)
Q Consensus 539 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~-~~L~~L~~L~~---~~~-~~~~i~~l~~L~~L~ 612 (841)
.|..|..|+||+| .+++.|..+.+-+++-+|+|| +++.++|..+ .+|+.|-.|+. ... .|..+..|..||+|.
T Consensus 101 ~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 101 RLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred ccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhh
Confidence 9999999999999 899999999999999999999 7888899864 47777777732 223 344489999999999
Q ss_pred ccccc--chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCc
Q 045150 613 YVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQ 690 (841)
Q Consensus 613 l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 690 (841)
+++|. -.....+..+++|..|.+++.+.+ ...++ .++..+.+|..++++.|.+.. .-+.+-.++
T Consensus 180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT---l~N~P-tsld~l~NL~dvDlS~N~Lp~----------vPecly~l~ 245 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT---LDNIP-TSLDDLHNLRDVDLSENNLPI----------VPECLYKLR 245 (1255)
T ss_pred cCCChhhHHHHhcCccchhhhhhhcccccch---hhcCC-CchhhhhhhhhccccccCCCc----------chHHHhhhh
Confidence 99987 445667778888899999887644 33344 788889999999999884321 112355678
Q ss_pred ccceeEeccccC-CCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccc
Q 045150 691 RLVDLRLTGRMT-TLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLL 769 (841)
Q Consensus 691 ~L~~L~L~~~~~-~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L 769 (841)
+|+.|+|++|.. .+....... .+|++|+|+.|+++ ..|..+.+|+.|+.|.+.+|+++ -+.++.+.+.+..|
T Consensus 246 ~LrrLNLS~N~iteL~~~~~~W-~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~-----FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITELNMTEGEW-ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT-----FEGIPSGIGKLIQL 318 (1255)
T ss_pred hhheeccCcCceeeeeccHHHH-hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc-----ccCCccchhhhhhh
Confidence 899999999843 355445555 89999999999986 57889999999999999887553 23455667789999
Q ss_pred cceeccccccCceEEEEccCccccccccccccccCCC-CCCcccccc
Q 045150 770 EILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIPNL-NIPERLRSI 815 (841)
Q Consensus 770 ~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~~L-~lp~~l~~l 815 (841)
+.+...+|. ++-.|.....++.|++|.+. |+.| ++|++|.-|
T Consensus 319 evf~aanN~--LElVPEglcRC~kL~kL~L~--~NrLiTLPeaIHlL 361 (1255)
T KOG0444|consen 319 EVFHAANNK--LELVPEGLCRCVKLQKLKLD--HNRLITLPEAIHLL 361 (1255)
T ss_pred HHHHhhccc--cccCchhhhhhHHHHHhccc--ccceeechhhhhhc
Confidence 999999886 88888888899999999998 9999 999988766
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=3.6e-21 Score=201.06 Aligned_cols=311 Identities=19% Similarity=0.146 Sum_probs=228.4
Q ss_pred cceEeeeeecCCCeeeecc-CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchh-hcc
Q 045150 461 SCRRQAIYSETPSFFWLHH-SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNK-KLG 538 (841)
Q Consensus 461 ~~r~l~i~~~~~~~~~~~~-~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~-~i~ 538 (841)
++..+.+..+....+|... ...++..|.+..+.... .-...++-++.||+||||.|. +. ++|. ++.
T Consensus 103 nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~s----v~se~L~~l~alrslDLSrN~------is--~i~~~sfp 170 (873)
T KOG4194|consen 103 NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISS----VTSEELSALPALRSLDLSRNL------IS--EIPKPSFP 170 (873)
T ss_pred cceeeeeccchhhhcccccccccceeEEeeecccccc----ccHHHHHhHhhhhhhhhhhch------hh--cccCCCCC
Confidence 3444555544444444333 56678888888877643 445677888999999999998 77 5653 455
Q ss_pred ccCcceeeecCCCcCccccC-cccCCCCCCCeeecC-CcccccCcccc-ccccccceeccc---cc--ccCCcccccccc
Q 045150 539 KLIHLKYLGIRGTTFIRDFP-SSIFNLPGLQTLDLS-RCIVQLPPETD-MMRELRHLIGKL---IG--TLPIENLTNLQT 610 (841)
Q Consensus 539 ~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~-~~~~~lp~~~~-~L~~L~~L~~~~---~~--~~~i~~l~~L~~ 610 (841)
.=.++++|+|++| .|+.+- ..|..|.+|.+|.|+ +.+..+|.... +|++|+.|..+. .. -..|..|++|+.
T Consensus 171 ~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 171 AKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN 249 (873)
T ss_pred CCCCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence 5678999999999 666553 568889999999999 78888998544 599999994322 22 223888999999
Q ss_pred ccccccc--chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCC
Q 045150 611 LKYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSH 688 (841)
Q Consensus 611 L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 688 (841)
|.+..|+ ......|..|.++++|++..|+... +...++.++..|+.|++++|.+ ..+ ....++.
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-----vn~g~lfgLt~L~~L~lS~NaI--------~ri-h~d~Wsf 315 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-----VNEGWLFGLTSLEQLDLSYNAI--------QRI-HIDSWSF 315 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccchhhh-----hhcccccccchhhhhccchhhh--------hee-ecchhhh
Confidence 9998887 4445568889999999999887442 2226778899999999999843 333 4456778
Q ss_pred CcccceeEecccc-CCCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcc
Q 045150 689 CQRLVDLRLTGRM-TTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFP 767 (841)
Q Consensus 689 ~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~ 767 (841)
+++|+.|+|+.|. ..+++.-...+..|+.|+|+.|.++...-..|..+.+|+.|+|++|.++.. ..+. .....+++
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~-IEDa--a~~f~gl~ 392 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC-IEDA--AVAFNGLP 392 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE-Eecc--hhhhccch
Confidence 8999999999874 456654433349999999999998766667788999999999998866532 1111 12334689
Q ss_pred cccceeccccccCceEEEEc-cCccccccccccccccC
Q 045150 768 LLEILLLDAVEVGIVEWQVE-ERAMPMLRGLKIPSDIP 804 (841)
Q Consensus 768 ~L~~L~l~~~~~~l~~~~~~-~~~~p~L~~L~l~~~c~ 804 (841)
+|+.|.+.+|. ++.++-. ...++.|+.|++. +++
T Consensus 393 ~LrkL~l~gNq--lk~I~krAfsgl~~LE~LdL~-~Na 427 (873)
T KOG4194|consen 393 SLRKLRLTGNQ--LKSIPKRAFSGLEALEHLDLG-DNA 427 (873)
T ss_pred hhhheeecCce--eeecchhhhccCcccceecCC-CCc
Confidence 99999999986 8888643 4578999999998 554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=1.1e-19 Score=190.02 Aligned_cols=300 Identities=21% Similarity=0.199 Sum_probs=190.4
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccC-
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFP- 558 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp- 558 (841)
-.+..++|.+.++.... .-...|.++++|+.+++..|. ++ .+|.......||+.|+|.+| .|..+.
T Consensus 76 lp~~t~~LdlsnNkl~~----id~~~f~nl~nLq~v~l~~N~------Lt--~IP~f~~~sghl~~L~L~~N-~I~sv~s 142 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSH----IDFEFFYNLPNLQEVNLNKNE------LT--RIPRFGHESGHLEKLDLRHN-LISSVTS 142 (873)
T ss_pred Cccceeeeecccccccc----CcHHHHhcCCcceeeeeccch------hh--hcccccccccceeEEeeecc-ccccccH
Confidence 34566778887776532 334567888888888888888 77 78876667777888888888 565543
Q ss_pred cccCCCCCCCeeecC-CcccccCc-cccccccccceec--cccc---ccCCccccccccccccccc--chhccccccccC
Q 045150 559 SSIFNLPGLQTLDLS-RCIVQLPP-ETDMMRELRHLIG--KLIG---TLPIENLTNLQTLKYVRCK--SWIRVNTAKLVN 629 (841)
Q Consensus 559 ~~i~~L~~L~~L~L~-~~~~~lp~-~~~~L~~L~~L~~--~~~~---~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~ 629 (841)
+++..++.|++|||+ +.+.++|. .+..=.++++|+. +..+ ...|.++.+|-+|.++.|. ...+..|.++++
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 457778888888888 66666665 4445567777733 1111 1226666777777777776 233445666777
Q ss_pred CCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccc---------------cCCCCCCCcccce
Q 045150 630 LRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFA---------------SLQPLSHCQRLVD 694 (841)
Q Consensus 630 L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---------------~l~~l~~~~~L~~ 694 (841)
|+.|++..|.+.- .....+..+++|+.|.|..|.+..--...+..+. .-..+-.+..|+.
T Consensus 223 L~~LdLnrN~iri-----ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 223 LESLDLNRNRIRI-----VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQ 297 (873)
T ss_pred hhhhhccccceee-----ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhh
Confidence 7777776665321 1113344455555555554433221111111110 0112345667888
Q ss_pred eEeccccCC---CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccc
Q 045150 695 LRLTGRMTT---LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEI 771 (841)
Q Consensus 695 L~L~~~~~~---~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~ 771 (841)
|+++.|... ...|- ++++|+.|+|++|.++...+..|..|..|+.|+|++|.++... .+...++.+|++
T Consensus 298 L~lS~NaI~rih~d~Ws--ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~------e~af~~lssL~~ 369 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWS--FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA------EGAFVGLSSLHK 369 (873)
T ss_pred hccchhhhheeecchhh--hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH------hhHHHHhhhhhh
Confidence 888887432 33332 3588888888888888888888888888888888888664322 122346789999
Q ss_pred eeccccccCceEEEEcc-----CccccccccccccccCCC-CCCc
Q 045150 772 LLLDAVEVGIVEWQVEE-----RAMPMLRGLKIPSDIPNL-NIPE 810 (841)
Q Consensus 772 L~l~~~~~~l~~~~~~~-----~~~p~L~~L~l~~~c~~L-~lp~ 810 (841)
|+|++|. +. |.++. ..||+|++|.+. -++| .+|.
T Consensus 370 LdLr~N~--ls-~~IEDaa~~f~gl~~LrkL~l~--gNqlk~I~k 409 (873)
T KOG4194|consen 370 LDLRSNE--LS-WCIEDAAVAFNGLPSLRKLRLT--GNQLKSIPK 409 (873)
T ss_pred hcCcCCe--EE-EEEecchhhhccchhhhheeec--Cceeeecch
Confidence 9999986 54 43433 248999999998 5577 7763
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=1.1e-17 Score=206.65 Aligned_cols=132 Identities=23% Similarity=0.227 Sum_probs=87.2
Q ss_pred HHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecccc--CCCCccccccCCCccEEEEEeccCCCC
Q 045150 651 ESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM--TTLPKDMHVLLPNLECLSLKVVLPEEN 728 (841)
Q Consensus 651 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~ 728 (841)
..+.++++|+.|++++|.....+|. ...+++|+.|+++++. ..+|. .+++|+.|+|++|.+. .
T Consensus 796 ~si~~L~~L~~L~Ls~C~~L~~LP~----------~~~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~-~ 860 (1153)
T PLN03210 796 SSIQNLHKLEHLEIENCINLETLPT----------GINLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRTGIE-E 860 (1153)
T ss_pred hhhhCCCCCCEEECCCCCCcCeeCC----------CCCccccCEEECCCCCccccccc----cccccCEeECCCCCCc-c
Confidence 4556666666666666532222221 1145678888888752 23443 2378899999999885 4
Q ss_pred ChhhhhhcccCCeEEEecc-cCCCCCccccceEEcCCCcccccceeccccccCceEEEEcc-------------Cccccc
Q 045150 729 PMPALEMLSNLTILDLNFY-RDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEE-------------RAMPML 794 (841)
Q Consensus 729 ~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~-------------~~~p~L 794 (841)
.|..+..+++|+.|+|++| ++.. +......+++|+.|.+++|. +++.++... ..+|..
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~-------l~~~~~~L~~L~~L~l~~C~-~L~~~~l~~~~~~~~~~~~n~~~~~p~~ 932 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQR-------VSLNISKLKHLETVDFSDCG-ALTEASWNGSPSEVAMATDNIHSKLPST 932 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCc-------cCcccccccCCCeeecCCCc-ccccccCCCCchhhhhhcccccccCCch
Confidence 5678899999999999874 3322 22334568899999999999 888664421 134555
Q ss_pred cccccccccCCC
Q 045150 795 RGLKIPSDIPNL 806 (841)
Q Consensus 795 ~~L~l~~~c~~L 806 (841)
..+.+. +|.+|
T Consensus 933 ~~l~f~-nC~~L 943 (1153)
T PLN03210 933 VCINFI-NCFNL 943 (1153)
T ss_pred hccccc-cccCC
Confidence 667788 89888
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.60 E-value=1.5e-17 Score=166.92 Aligned_cols=255 Identities=21% Similarity=0.245 Sum_probs=169.9
Q ss_pred eeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCC
Q 045150 484 SRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFN 563 (841)
Q Consensus 484 lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 563 (841)
+..+++..+... .+...+..+..|.||++.+|. +. .+|..++.+..++.|+.++| .+.++|+.++.
T Consensus 47 l~~lils~N~l~-----~l~~dl~nL~~l~vl~~~~n~------l~--~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s 112 (565)
T KOG0472|consen 47 LQKLILSHNDLE-----VLREDLKNLACLTVLNVHDNK------LS--QLPAAIGELEALKSLNVSHN-KLSELPEQIGS 112 (565)
T ss_pred hhhhhhccCchh-----hccHhhhcccceeEEEeccch------hh--hCCHHHHHHHHHHHhhcccc-hHhhccHHHhh
Confidence 334444444432 334556677777888888877 66 67777888888888888877 67778877888
Q ss_pred CCCCCeeecC-CcccccCccccccccccceec---c-cccccCCccccccccccccccc-chhccccccccCCCceEEec
Q 045150 564 LPGLQTLDLS-RCIVQLPPETDMMRELRHLIG---K-LIGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVG 637 (841)
Q Consensus 564 L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~---~-~~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~ 637 (841)
+.+|..|+.+ ++..++|++++.+..|..|.. + .+.|..++++.+|..|.+.++. ...++..-.++.|++|+...
T Consensus 113 ~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 113 LISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch
Confidence 8888888877 677777877777777777722 2 2344447777777777777776 55555555577777777755
Q ss_pred cCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccC-CCCccccccCCCcc
Q 045150 638 GDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMT-TLPKDMHVLLPNLE 716 (841)
Q Consensus 638 ~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~~L~ 716 (841)
|- ...++ ..++.+.+|..|++..|++ ..+..+..|+.|++|+++.|.. .+|..+...+++|.
T Consensus 193 N~-----L~tlP-~~lg~l~~L~~LyL~~Nki-----------~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~ 255 (565)
T KOG0472|consen 193 NL-----LETLP-PELGGLESLELLYLRRNKI-----------RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLL 255 (565)
T ss_pred hh-----hhcCC-hhhcchhhhHHHHhhhccc-----------ccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccce
Confidence 54 23333 7777778888888877733 2344566677777777777643 36766664447777
Q ss_pred EEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccc
Q 045150 717 CLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVE 778 (841)
Q Consensus 717 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 778 (841)
.|+|..|++. ..|..+..+.+|.+|++|+|-+++.++.. +.+ .|+.|.+.+||
T Consensus 256 vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sL-------gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 256 VLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSL-------GNL-HLKFLALEGNP 308 (565)
T ss_pred eeeccccccc-cCchHHHHhhhhhhhcccCCccccCCccc-------ccc-eeeehhhcCCc
Confidence 7888877774 45666777777778888777666655432 234 55666666655
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=3e-17 Score=181.38 Aligned_cols=185 Identities=19% Similarity=0.186 Sum_probs=101.9
Q ss_pred ccccccccccc-chhccccccccCCCceEEeccCCCCc------------------CcccccHHHHhccCCcceEEeeec
Q 045150 607 NLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSM------------------GEMEFSFESIAKLKNLQFLSVNLS 667 (841)
Q Consensus 607 ~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~------------------g~~~~~~~~l~~l~~L~~L~l~~~ 667 (841)
+|+.++++.+. ...|.-++.+.+|+.|.+..|..... ....++ ..+..+++|++|+|..|
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip-~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIP-PFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCC-Ccccccceeeeeeehhc
Confidence 34444444444 33444456666777776666542100 011111 33445678888888888
Q ss_pred CCCccCCCCCc--------------ccccCCCC--CCCcccceeEeccccCC---CCccccccCCCccEEEEEeccCCCC
Q 045150 668 DGTVVLPQSSN--------------AFASLQPL--SHCQRLVDLRLTGRMTT---LPKDMHVLLPNLECLSLKVVLPEEN 728 (841)
Q Consensus 668 ~~~~~~~~~~~--------------~~~~l~~l--~~~~~L~~L~L~~~~~~---~p~~~~~l~~~L~~L~L~~~~l~~~ 728 (841)
.+....+..+. .++.+... ..++.|+.|++.+|..+ +| -+..+ .+|+.|+|++|++...
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~-~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VLVNF-KHLKVLHLSYNRLNSF 398 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hhccc-cceeeeeecccccccC
Confidence 65432111100 00111111 12456777888776432 33 34454 8899999999988777
Q ss_pred ChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEccCccccccccccccccCCC
Q 045150 729 PMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIPNL 806 (841)
Q Consensus 729 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~~L 806 (841)
+...+.+++.|+.|+||+|+++..+.. ...++.|++|...+|. +...| +...+|+|+.++++ |++|
T Consensus 399 pas~~~kle~LeeL~LSGNkL~~Lp~t-------va~~~~L~tL~ahsN~--l~~fP-e~~~l~qL~~lDlS--~N~L 464 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLTTLPDT-------VANLGRLHTLRAHSNQ--LLSFP-ELAQLPQLKVLDLS--CNNL 464 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhhhhhHH-------HHhhhhhHHHhhcCCc--eeech-hhhhcCcceEEecc--cchh
Confidence 777788899999999999887654421 1234455555555543 44444 44455555555555 5544
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.55 E-value=3.2e-17 Score=164.64 Aligned_cols=257 Identities=22% Similarity=0.228 Sum_probs=207.2
Q ss_pred ceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCcccccccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRE 588 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~ 588 (841)
.-|..|++++|. ++ .+-..+.+|..|.+|++.+| ...++|++++.+..++.|+.+ +++.++|+.++.+.+
T Consensus 45 v~l~~lils~N~------l~--~l~~dl~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~ 115 (565)
T KOG0472|consen 45 VDLQKLILSHND------LE--VLREDLKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLIS 115 (565)
T ss_pred cchhhhhhccCc------hh--hccHhhhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhh
Confidence 457788999998 77 67778999999999999999 889999999999999999999 899999999999999
Q ss_pred ccceecc----cccccCCccccccccccccccc-chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEE
Q 045150 589 LRHLIGK----LIGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLS 663 (841)
Q Consensus 589 L~~L~~~----~~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~ 663 (841)
|++|+.. ...+..++.+..|+.|+..+++ ...|.++..+.+|..|.+.+|. ...++ ...-+++.|++|+
T Consensus 116 l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-----l~~l~-~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 116 LVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-----LKALP-ENHIAMKRLKHLD 189 (565)
T ss_pred hhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-----hhhCC-HHHHHHHHHHhcc
Confidence 9999542 2445569999999999998888 8889999999999999998886 44455 4445599999999
Q ss_pred eeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC-CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeE
Q 045150 664 VNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT-LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTIL 742 (841)
Q Consensus 664 l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 742 (841)
...|.+. ..|.. ++.+.+|..|++..|... +| .+.. |..|++|+++.|.+...+...+.++++|..|
T Consensus 190 ~~~N~L~-tlP~~---------lg~l~~L~~LyL~~Nki~~lP-ef~g-cs~L~Elh~g~N~i~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 190 CNSNLLE-TLPPE---------LGGLESLELLYLRRNKIRFLP-EFPG-CSLLKELHVGENQIEMLPAEHLKHLNSLLVL 257 (565)
T ss_pred cchhhhh-cCChh---------hcchhhhHHHHhhhcccccCC-CCCc-cHHHHHHHhcccHHHhhHHHHhcccccceee
Confidence 9887432 23322 344567888888877544 66 5555 4889999999999864444456699999999
Q ss_pred EEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEccCccccccccccccccC
Q 045150 743 DLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIP 804 (841)
Q Consensus 743 ~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~ 804 (841)
+|..|+++..+- ...-+.+|++|++++|. ++.+|...|.+ .|+.|.+. +.|
T Consensus 258 DLRdNklke~Pd-------e~clLrsL~rLDlSNN~--is~Lp~sLgnl-hL~~L~le-GNP 308 (565)
T KOG0472|consen 258 DLRDNKLKEVPD-------EICLLRSLERLDLSNND--ISSLPYSLGNL-HLKFLALE-GNP 308 (565)
T ss_pred eccccccccCch-------HHHHhhhhhhhcccCCc--cccCCcccccc-eeeehhhc-CCc
Confidence 999998865442 12347889999999987 99999999998 89999888 766
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.40 E-value=4.7e-13 Score=153.62 Aligned_cols=257 Identities=20% Similarity=0.143 Sum_probs=170.8
Q ss_pred eeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCC
Q 045150 485 RSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNL 564 (841)
Q Consensus 485 r~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 564 (841)
..|.+..+... .++..+. ++|+.|++++|. ++ .+|. .+++|++|+|++| .++.+|.. .
T Consensus 204 ~~LdLs~~~Lt-----sLP~~l~--~~L~~L~L~~N~------Lt--~LP~---lp~~Lk~LdLs~N-~LtsLP~l---p 261 (788)
T PRK15387 204 AVLNVGESGLT-----TLPDCLP--AHITTLVIPDNN------LT--SLPA---LPPELRTLEVSGN-QLTSLPVL---P 261 (788)
T ss_pred cEEEcCCCCCC-----cCCcchh--cCCCEEEccCCc------CC--CCCC---CCCCCcEEEecCC-ccCcccCc---c
Confidence 35566666543 2233232 479999999999 88 7775 3588999999999 78888863 4
Q ss_pred CCCCeeecC-CcccccCcccccccccccee---cccccccCCccccccccccccccc-chhccccccccCCCceEEeccC
Q 045150 565 PGLQTLDLS-RCIVQLPPETDMMRELRHLI---GKLIGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGD 639 (841)
Q Consensus 565 ~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~---~~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~ 639 (841)
++|++|+++ |.+..+|.... +|+.|. +.... .+ ..+++|+.|++++|. ...+.. ..+|+.|.+.+|.
T Consensus 262 ~sL~~L~Ls~N~L~~Lp~lp~---~L~~L~Ls~N~Lt~-LP-~~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~ 333 (788)
T PRK15387 262 PGLLELSIFSNPLTHLPALPS---GLCKLWIFGNQLTS-LP-VLPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ 333 (788)
T ss_pred cccceeeccCCchhhhhhchh---hcCEEECcCCcccc-cc-ccccccceeECCCCccccCCCC---cccccccccccCc
Confidence 689999999 77777776443 444553 22221 11 134689999998887 333321 2457788888776
Q ss_pred CCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecccc-CCCCccccccCCCccEE
Q 045150 640 GQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPKDMHVLLPNLECL 718 (841)
Q Consensus 640 ~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L 718 (841)
.. . ++ . -..+|+.|+|++|.+.. +| . .+++|+.|++++|. ..+|.. +++|+.|
T Consensus 334 L~---~--LP-~---lp~~Lq~LdLS~N~Ls~-LP-------~-----lp~~L~~L~Ls~N~L~~LP~l----~~~L~~L 387 (788)
T PRK15387 334 LT---S--LP-T---LPSGLQELSVSDNQLAS-LP-------T-----LPSELYKLWAYNNRLTSLPAL----PSGLKEL 387 (788)
T ss_pred cc---c--cc-c---cccccceEecCCCccCC-CC-------C-----CCcccceehhhccccccCccc----ccccceE
Confidence 43 1 11 1 12479999999986543 11 1 13467888888764 335542 3679999
Q ss_pred EEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEccCccccccccc
Q 045150 719 SLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAMPMLRGLK 798 (841)
Q Consensus 719 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~ 798 (841)
+|++|.++..+ .. .++|+.|++++|++++.+. .+.+|+.|++++|. ++.+|.....+++|+.|+
T Consensus 388 dLs~N~Lt~LP-~l---~s~L~~LdLS~N~LssIP~----------l~~~L~~L~Ls~Nq--Lt~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 388 IVSGNRLTSLP-VL---PSELKELMVSGNRLTSLPM----------LPSGLLSLSVYRNQ--LTRLPESLIHLSSETTVN 451 (788)
T ss_pred EecCCcccCCC-Cc---ccCCCEEEccCCcCCCCCc----------chhhhhhhhhccCc--ccccChHHhhccCCCeEE
Confidence 99999886432 22 3678999999987765431 13478889999886 888887777889999999
Q ss_pred cccccCCC--CCCcccccc
Q 045150 799 IPSDIPNL--NIPERLRSI 815 (841)
Q Consensus 799 l~~~c~~L--~lp~~l~~l 815 (841)
++ +++ | ..|..+.++
T Consensus 452 Ls-~N~-Ls~~~~~~L~~l 468 (788)
T PRK15387 452 LE-GNP-LSERTLQALREI 468 (788)
T ss_pred CC-CCC-CCchHHHHHHHH
Confidence 98 654 5 555555443
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.39 E-value=2.7e-14 Score=158.37 Aligned_cols=255 Identities=22% Similarity=0.274 Sum_probs=139.5
Q ss_pred ceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCcccccccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRE 588 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~ 588 (841)
.+|++++++.+. +. .+|+.++.+.+|..|++.+| .+..+|..+....+|+.|++. |.+..+|+....++.
T Consensus 241 ~nl~~~dis~n~------l~--~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~s 311 (1081)
T KOG0618|consen 241 LNLQYLDISHNN------LS--NLPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKS 311 (1081)
T ss_pred ccceeeecchhh------hh--cchHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccce
Confidence 345555555555 44 45555555555555555555 445555555555555555555 445555555555555
Q ss_pred ccceecc--cccccC---Cccc-ccccccccccccchhcccc--ccccCCCceEEeccCCCCcCcccccHHHHhccCCcc
Q 045150 589 LRHLIGK--LIGTLP---IENL-TNLQTLKYVRCKSWIRVNT--AKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQ 660 (841)
Q Consensus 589 L~~L~~~--~~~~~~---i~~l-~~L~~L~l~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~ 660 (841)
|++|... .....+ +..+ .+|..|+.+.+.-...... ..+..|+.|.+.+|... .-++..+.++++|+
T Consensus 312 L~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt-----d~c~p~l~~~~hLK 386 (1081)
T KOG0618|consen 312 LRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT-----DSCFPVLVNFKHLK 386 (1081)
T ss_pred eeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc-----ccchhhhcccccee
Confidence 5555221 111111 1111 1133333333321111111 23445677777777633 12225677778888
Q ss_pred eEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccC-CCCccccccCCCccEEEEEeccCCCCChhhhhhcccC
Q 045150 661 FLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMT-TLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNL 739 (841)
Q Consensus 661 ~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L 739 (841)
.|+|++|.+.. ++ -..+.+++.|++|+|+||.. ++|..+..+ +.|+.|...+|.+.. .|.+..++.|
T Consensus 387 VLhLsyNrL~~--------fp-as~~~kle~LeeL~LSGNkL~~Lp~tva~~-~~L~tL~ahsN~l~~--fPe~~~l~qL 454 (1081)
T KOG0618|consen 387 VLHLSYNRLNS--------FP-ASKLRKLEELEELNLSGNKLTTLPDTVANL-GRLHTLRAHSNQLLS--FPELAQLPQL 454 (1081)
T ss_pred eeeeccccccc--------CC-HHHHhchHHhHHHhcccchhhhhhHHHHhh-hhhHHHhhcCCceee--chhhhhcCcc
Confidence 88888874422 11 11245566788888888754 477766665 888888888887753 2377888888
Q ss_pred CeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEccCccccccccccc
Q 045150 740 TILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIP 800 (841)
Q Consensus 740 ~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~ 800 (841)
+.+|+|.|.++....... -.-|+|++|++++|. . ..++...||.++.+...
T Consensus 455 ~~lDlS~N~L~~~~l~~~------~p~p~LkyLdlSGN~-~---l~~d~~~l~~l~~l~~~ 505 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEA------LPSPNLKYLDLSGNT-R---LVFDHKTLKVLKSLSQM 505 (1081)
T ss_pred eEEecccchhhhhhhhhh------CCCcccceeeccCCc-c---cccchhhhHHhhhhhhe
Confidence 888888876654321110 112688888888876 3 22344456666655544
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.34 E-value=4.3e-14 Score=125.91 Aligned_cols=146 Identities=25% Similarity=0.292 Sum_probs=84.3
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCc
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPS 559 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~ 559 (841)
.++++..|.++.+... ..++-+..+.+|++|++++|+ ++ ++|.+++.++.||.|++.-| .+..+|.
T Consensus 31 ~~s~ITrLtLSHNKl~-----~vppnia~l~nlevln~~nnq------ie--~lp~~issl~klr~lnvgmn-rl~~lpr 96 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-----VVPPNIAELKNLEVLNLSNNQ------IE--ELPTSISSLPKLRILNVGMN-RLNILPR 96 (264)
T ss_pred chhhhhhhhcccCcee-----ecCCcHHHhhhhhhhhcccch------hh--hcChhhhhchhhhheecchh-hhhcCcc
Confidence 4455555555555542 333445666677777777776 66 67777777777777777766 5666677
Q ss_pred ccCCCCCCCeeecC-Cccc--ccCccccccccccceec---ccc-cccCCccccccccccccccc-chhccccccccCCC
Q 045150 560 SIFNLPGLQTLDLS-RCIV--QLPPETDMMRELRHLIG---KLI-GTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLR 631 (841)
Q Consensus 560 ~i~~L~~L~~L~L~-~~~~--~lp~~~~~L~~L~~L~~---~~~-~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~ 631 (841)
.++.++-|++|||. +|+. .+|..|..|+.|+-|+. .+. .|..++++++||.|.+-.++ -..|.+++.++.|+
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lr 176 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLR 176 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHH
Confidence 77777777777776 5443 36666666665555532 222 22225555555555555444 44455555555555
Q ss_pred ceEEeccC
Q 045150 632 ELHIVGGD 639 (841)
Q Consensus 632 ~L~l~~~~ 639 (841)
+|+|.+|.
T Consensus 177 elhiqgnr 184 (264)
T KOG0617|consen 177 ELHIQGNR 184 (264)
T ss_pred HHhcccce
Confidence 55555444
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=6.1e-14 Score=124.90 Aligned_cols=147 Identities=20% Similarity=0.258 Sum_probs=108.8
Q ss_pred cCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCcccccc
Q 045150 508 RFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMM 586 (841)
Q Consensus 508 ~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L 586 (841)
.+.+...|.||+|+ ++ ..|..|..|.+|+.|++++| .+.++|.+|+.+++|+.|+++ +.+..+|.+|+.+
T Consensus 31 ~~s~ITrLtLSHNK------l~--~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK------LT--VVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred chhhhhhhhcccCc------ee--ecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 45667778899998 87 78889999999999999998 899999999999999999999 7888889888888
Q ss_pred cccccee---ccc---ccccCCccccccccccccccc-chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCc
Q 045150 587 RELRHLI---GKL---IGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNL 659 (841)
Q Consensus 587 ~~L~~L~---~~~---~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L 659 (841)
+.|..|+ ++. ..|-.+-.|+.|+.|++..++ ...|.+++++++|+.|.+..|. ...++ ..++.+..|
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-----ll~lp-keig~lt~l 175 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-----LLSLP-KEIGDLTRL 175 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-----hhhCc-HHHHHHHHH
Confidence 7777772 221 223335666667777777766 6667777777777777776664 33344 666666777
Q ss_pred ceEEeeecCC
Q 045150 660 QFLSVNLSDG 669 (841)
Q Consensus 660 ~~L~l~~~~~ 669 (841)
+.|++.+|.+
T Consensus 176 relhiqgnrl 185 (264)
T KOG0617|consen 176 RELHIQGNRL 185 (264)
T ss_pred HHHhccccee
Confidence 7777766643
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=3.2e-12 Score=147.87 Aligned_cols=255 Identities=17% Similarity=0.163 Sum_probs=159.5
Q ss_pred ceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccC
Q 045150 483 LSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIF 562 (841)
Q Consensus 483 ~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 562 (841)
+...|.+.+..... ++..+ .+.|+.|+|++|. ++ .+|..+. .+|++|++++| .+..+|..+.
T Consensus 179 ~~~~L~L~~~~Lts-----LP~~I--p~~L~~L~Ls~N~------Lt--sLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~ 240 (754)
T PRK15370 179 NKTELRLKILGLTT-----IPACI--PEQITTLILDNNE------LK--SLPENLQ--GNIKTLYANSN-QLTSIPATLP 240 (754)
T ss_pred CceEEEeCCCCcCc-----CCccc--ccCCcEEEecCCC------CC--cCChhhc--cCCCEEECCCC-ccccCChhhh
Confidence 44567776655432 22212 2478999999998 88 7887664 58999999999 7888887654
Q ss_pred CCCCCCeeecC-CcccccCccccccccccceeccc--ccccCCccccccccccccccc-chhccccccccCCCceEEecc
Q 045150 563 NLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKL--IGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGG 638 (841)
Q Consensus 563 ~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~--~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~ 638 (841)
.+|+.|+|+ |++..+|..+. .+|+.|.... ....+-.-.++|+.|++++|. ...+..+. ++|+.|++++|
T Consensus 241 --~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N 314 (754)
T PRK15370 241 --DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN 314 (754)
T ss_pred --ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccCCCCcEEECCCCccccCcccch--hhHHHHHhcCC
Confidence 479999999 78888887664 4677774311 111121112478888888776 33333332 46777788777
Q ss_pred CCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecccc-CCCCccccccCCCccE
Q 045150 639 DGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPKDMHVLLPNLEC 717 (841)
Q Consensus 639 ~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~ 717 (841)
.... ++ ..+ .++|+.|++++|.++. +|.. -+++|+.|++++|. ..+|..+ +++|+.
T Consensus 315 ~Lt~-----LP-~~l--~~sL~~L~Ls~N~Lt~-LP~~-----------l~~sL~~L~Ls~N~L~~LP~~l---p~~L~~ 371 (754)
T PRK15370 315 SLTA-----LP-ETL--PPGLKTLEAGENALTS-LPAS-----------LPPELQVLDVSKNQITVLPETL---PPTITT 371 (754)
T ss_pred cccc-----CC-ccc--cccceeccccCCcccc-CChh-----------hcCcccEEECCCCCCCcCChhh---cCCcCE
Confidence 6431 11 212 2578888888875432 2211 13578888888764 3466544 377888
Q ss_pred EEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEccCcccccccc
Q 045150 718 LSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAMPMLRGL 797 (841)
Q Consensus 718 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L 797 (841)
|+|++|.++.. |+.+. ++|+.|++++|+++..+. .+......++++..|.+.+|+ +. ...+++|+.|
T Consensus 372 LdLs~N~Lt~L-P~~l~--~sL~~LdLs~N~L~~LP~---sl~~~~~~~~~l~~L~L~~Np--ls-----~~tl~~L~~L 438 (754)
T PRK15370 372 LDVSRNALTNL-PENLP--AALQIMQASRNNLVRLPE---SLPHFRGEGPQPTRIIVEYNP--FS-----ERTIQNMQRL 438 (754)
T ss_pred EECCCCcCCCC-CHhHH--HHHHHHhhccCCcccCch---hHHHHhhcCCCccEEEeeCCC--cc-----HHHHHHHHHh
Confidence 88888887643 33343 368888888887764332 111122345778888888887 43 3456666665
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.25 E-value=6.9e-11 Score=135.97 Aligned_cols=235 Identities=21% Similarity=0.088 Sum_probs=110.3
Q ss_pred ccceEeeeeecCCCeeeeccCCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccc
Q 045150 460 SSCRRQAIYSETPSFFWLHHSNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGK 539 (841)
Q Consensus 460 ~~~r~l~i~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~ 539 (841)
..++.+.+..+....++. ..++|+.|.+.+|.... ++. ..++|+.|++++|. +. .+|..
T Consensus 222 ~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts-----LP~---lp~sL~~L~Ls~N~------L~--~Lp~l--- 280 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS-----LPV---LPPGLLELSIFSNP------LT--HLPAL--- 280 (788)
T ss_pred cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc-----ccC---cccccceeeccCCc------hh--hhhhc---
Confidence 345555555443333321 34566666666654421 111 13456666666666 55 45532
Q ss_pred cCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceecccccccCCccccccccccccccc-
Q 045150 540 LIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK- 617 (841)
Q Consensus 540 L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~- 617 (841)
...|+.|++++| .+..+|.. +++|++|+++ |.+..+|.....|..|..-.+....... ...+|+.|++++|.
T Consensus 281 p~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~--lp~~Lq~LdLS~N~L 354 (788)
T PRK15387 281 PSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPT--LPSGLQELSVSDNQL 354 (788)
T ss_pred hhhcCEEECcCC-cccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccc--cccccceEecCCCcc
Confidence 245666666666 56666642 3567777776 5555555433222222111111111000 11345666665554
Q ss_pred chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEe
Q 045150 618 SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRL 697 (841)
Q Consensus 618 ~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L 697 (841)
...|.. ..+|+.|++++|... .++ . ...+|+.|++++|.+.. +| . .+++|+.|++
T Consensus 355 s~LP~l---p~~L~~L~Ls~N~L~-----~LP-~---l~~~L~~LdLs~N~Lt~-LP-------~-----l~s~L~~LdL 409 (788)
T PRK15387 355 ASLPTL---PSELYKLWAYNNRLT-----SLP-A---LPSGLKELIVSGNRLTS-LP-------V-----LPSELKELMV 409 (788)
T ss_pred CCCCCC---Ccccceehhhccccc-----cCc-c---cccccceEEecCCcccC-CC-------C-----cccCCCEEEc
Confidence 222221 234455555554422 111 1 12355666666553321 11 0 0234666666
Q ss_pred cccc-CCCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCC
Q 045150 698 TGRM-TTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSG 751 (841)
Q Consensus 698 ~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 751 (841)
++|. ..+|.. +.+|+.|+|++|.++ ..|..++++++|+.|+|++|.+++
T Consensus 410 S~N~LssIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 410 SGNRLTSLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred cCCcCCCCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 6653 224431 245566666666654 344556666666666666665543
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.24 E-value=5.5e-12 Score=148.24 Aligned_cols=302 Identities=22% Similarity=0.191 Sum_probs=191.6
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccch-hhccccCcceeeecCCCcCccccC
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHN-KKLGKLIHLKYLGIRGTTFIRDFP 558 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p-~~i~~L~~L~~L~L~~~~~~~~lp 558 (841)
....+|...+.++..... ..-..++.|++|-+.++.. .+. .++ ..|..+++|++|||++|....++|
T Consensus 521 ~~~~~rr~s~~~~~~~~~------~~~~~~~~L~tLll~~n~~----~l~--~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHI------AGSSENPKLRTLLLQRNSD----WLL--EISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred chhheeEEEEeccchhhc------cCCCCCCccceEEEeecch----hhh--hcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 344556666666554221 1113455799999988851 022 333 347789999999999998899999
Q ss_pred cccCCCCCCCeeecC-CcccccCccccccccccceeccccc----ccC-Cccccccccccccccc----chhcccccccc
Q 045150 559 SSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIG----TLP-IENLTNLQTLKYVRCK----SWIRVNTAKLV 628 (841)
Q Consensus 559 ~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~----~~~-i~~l~~L~~L~l~~~~----~~~~~~l~~l~ 628 (841)
.+|++|.+|++|+++ +.+..+|.++.+|.+|.||+..... +.+ ...|++|++|.+.... .....++.++.
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 999999999999999 8999999999999999999654322 223 4559999999887664 44555666777
Q ss_pred CCCceEEeccCCCCcCcccccHHHHhccCCcc----eEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC-
Q 045150 629 NLRELHIVGGDGQSMGEMEFSFESIAKLKNLQ----FLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT- 703 (841)
Q Consensus 629 ~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~- 703 (841)
+|+.|.+..... ... ..+..+..|. .+.+.++. .......+..+++|+.|.+.++...
T Consensus 669 ~L~~ls~~~~s~------~~~-e~l~~~~~L~~~~~~l~~~~~~----------~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 669 HLENLSITISSV------LLL-EDLLGMTRLRSLLQSLSIEGCS----------KRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred chhhheeecchh------HhH-hhhhhhHHHHHHhHhhhhcccc----------cceeecccccccCcceEEEEcCCCch
Confidence 777777654331 111 2223333333 33322221 0112233556678888888775321
Q ss_pred -CCccc----ccc-CCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCcc-ccceE---EcCCCcccccce-
Q 045150 704 -LPKDM----HVL-LPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYH-EKKLS---CRAEGFPLLEIL- 772 (841)
Q Consensus 704 -~p~~~----~~l-~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~~---~~~~~f~~L~~L- 772 (841)
...|. ... ++++..+...+|... ..+.+..-.|+|+.|.+..+........ .+.+. .....|+++..+
T Consensus 732 ~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~ 810 (889)
T KOG4658|consen 732 IVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLR 810 (889)
T ss_pred hhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccce
Confidence 11111 111 256777777777543 2334445679999999987543322211 11110 012356777777
Q ss_pred eccccccCceEEEEccCccccccccccccccCCC-CCCcccc
Q 045150 773 LLDAVEVGIVEWQVEERAMPMLRGLKIPSDIPNL-NIPERLR 813 (841)
Q Consensus 773 ~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~~L-~lp~~l~ 813 (841)
.+.+.+ .+..+....-.+++|+.+.+. .||++ .+|..-+
T Consensus 811 ~~~~l~-~l~~i~~~~l~~~~l~~~~ve-~~p~l~~~P~~~~ 850 (889)
T KOG4658|consen 811 MLCSLG-GLPQLYWLPLSFLKLEELIVE-ECPKLGKLPLLST 850 (889)
T ss_pred eeecCC-CCceeEecccCccchhheehh-cCcccccCccccc
Confidence 577777 788887777788889999999 99999 8987533
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.22 E-value=3.6e-11 Score=139.25 Aligned_cols=221 Identities=19% Similarity=0.159 Sum_probs=139.1
Q ss_pred CceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCccc
Q 045150 482 SLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSI 561 (841)
Q Consensus 482 ~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i 561 (841)
++++.|.+.++.... .+... +.+|+.|++++|. ++ .+|..+. .+|+.|+|++| .+..+|..+
T Consensus 199 ~~L~~L~Ls~N~Lts----LP~~l---~~nL~~L~Ls~N~------Lt--sLP~~l~--~~L~~L~Ls~N-~L~~LP~~l 260 (754)
T PRK15370 199 EQITTLILDNNELKS----LPENL---QGNIKTLYANSNQ------LT--SIPATLP--DTIQEMELSIN-RITELPERL 260 (754)
T ss_pred cCCcEEEecCCCCCc----CChhh---ccCCCEEECCCCc------cc--cCChhhh--ccccEEECcCC-ccCcCChhH
Confidence 457777777765532 22222 2467888888877 76 6665543 46788888887 666777665
Q ss_pred CCCCCCCeeecC-CcccccCccccccccccceec---ccccccCCccccccccccccccc-chhccccccccCCCceEEe
Q 045150 562 FNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIG---KLIGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIV 636 (841)
Q Consensus 562 ~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~---~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~ 636 (841)
. .+|++|+++ |++..+|..+. ++|++|.. .... .+-.-.++|+.|++++|. ...+..+ .++|+.|.+.
T Consensus 261 ~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls 333 (754)
T PRK15370 261 P--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAG 333 (754)
T ss_pred h--CCCCEEECcCCccCccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccc--cccceecccc
Confidence 4 477888888 56666776554 36666632 1111 111112467888888876 3333333 3678889888
Q ss_pred ccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecccc-CCCCccccccCCCc
Q 045150 637 GGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPKDMHVLLPNL 715 (841)
Q Consensus 637 ~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L 715 (841)
+|... .++ ..+ .++|+.|++++|.+.. +|.. + +++|+.|+|++|. ..+|..+. .+|
T Consensus 334 ~N~Lt-----~LP-~~l--~~sL~~L~Ls~N~L~~-LP~~---------l--p~~L~~LdLs~N~Lt~LP~~l~---~sL 390 (754)
T PRK15370 334 ENALT-----SLP-ASL--PPELQVLDVSKNQITV-LPET---------L--PPTITTLDVSRNALTNLPENLP---AAL 390 (754)
T ss_pred CCccc-----cCC-hhh--cCcccEEECCCCCCCc-CChh---------h--cCCcCEEECCCCcCCCCCHhHH---HHH
Confidence 87643 122 333 2689999999986542 2211 1 3579999999874 45776553 579
Q ss_pred cEEEEEeccCCCCC---hhhhhhcccCCeEEEecccCC
Q 045150 716 ECLSLKVVLPEENP---MPALEMLSNLTILDLNFYRDS 750 (841)
Q Consensus 716 ~~L~L~~~~l~~~~---~~~l~~l~~L~~L~L~~N~l~ 750 (841)
+.|++++|++...+ +..++.++++..|+|.+|.++
T Consensus 391 ~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 391 QIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 99999999886432 223345688999999888654
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.20 E-value=1.6e-12 Score=139.68 Aligned_cols=245 Identities=20% Similarity=0.116 Sum_probs=115.6
Q ss_pred hhHHhccCceeeEEEeecCCcccccccccc---cchhhccccCcceeeecCCCcCcc-------ccCcccCCCCCCCeee
Q 045150 502 LAPLFKRFLLLRVLEIEESGYFSRMLFDNR---LHNKKLGKLIHLKYLGIRGTTFIR-------DFPSSIFNLPGLQTLD 571 (841)
Q Consensus 502 ~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~---~~p~~i~~L~~L~~L~L~~~~~~~-------~lp~~i~~L~~L~~L~ 571 (841)
....|..+..|++|++++|. +++. .++..+...+.|++|+++++ .+. .++..+.++++|+.|+
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~------l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~ 87 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNT------LGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELD 87 (319)
T ss_pred hHHHHHHHhhccEEeecCCC------CcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEE
Confidence 34556666677777777777 5321 24555666667777777776 333 2334556677777777
Q ss_pred cC-Ccccc-cCccccccccccceecccccccCCccccccccccccccc------chhccccccc-cCCCceEEeccCCCC
Q 045150 572 LS-RCIVQ-LPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK------SWIRVNTAKL-VNLRELHIVGGDGQS 642 (841)
Q Consensus 572 L~-~~~~~-lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~------~~~~~~l~~l-~~L~~L~l~~~~~~~ 642 (841)
++ +.+.. .+..+..+.+ . ++|+.|++++|. ......+..+ ++|+.|++++|....
T Consensus 88 l~~~~~~~~~~~~~~~l~~---------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 151 (319)
T cd00116 88 LSDNALGPDGCGVLESLLR---------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG 151 (319)
T ss_pred ccCCCCChhHHHHHHHHhc---------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc
Confidence 77 44432 2223322222 1 224444444443 1122233444 556666666555331
Q ss_pred cCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC------CCccccccCCCcc
Q 045150 643 MGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT------LPKDMHVLLPNLE 716 (841)
Q Consensus 643 ~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~------~p~~~~~l~~~L~ 716 (841)
.+...+. ..+..+.+|+.|++++|.+.+.. ...+ ...+..+++|+.|+++++... ++..+..+ ++|+
T Consensus 152 ~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~---~~~l--~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~-~~L~ 224 (319)
T cd00116 152 ASCEALA-KALRANRDLKELNLANNGIGDAG---IRAL--AEGLKANCNLEVLDLNNNGLTDEGASALAETLASL-KSLE 224 (319)
T ss_pred hHHHHHH-HHHHhCCCcCEEECcCCCCchHH---HHHH--HHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc-CCCC
Confidence 1111122 34445556666666655433210 0000 011222345666666654211 22222233 6666
Q ss_pred EEEEEeccCCCCChhhhhh-----cccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccc
Q 045150 717 CLSLKVVLPEENPMPALEM-----LSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVE 778 (841)
Q Consensus 717 ~L~L~~~~l~~~~~~~l~~-----l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 778 (841)
.|++++|.+++..+..+.. .+.|+.|++++|.+++... ..+......+++|+++++++|.
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~--~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA--KDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH--HHHHHHHhcCCCccEEECCCCC
Confidence 6666666655423322221 2566666666654432111 0111112234566666666665
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=1.3e-12 Score=140.32 Aligned_cols=260 Identities=18% Similarity=0.122 Sum_probs=164.2
Q ss_pred EEEeecCCcccccccccccchhhccccCcceeeecCCCcCc-----cccCcccCCCCCCCeeecC-CcccccCccccccc
Q 045150 514 VLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFI-----RDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMR 587 (841)
Q Consensus 514 ~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~-----~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~ 587 (841)
.|+|.++. +++...+..+..+.+|++|++++| .+ ..++..+...++|++|+++ +.+...+..+..+
T Consensus 2 ~l~L~~~~------l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~- 73 (319)
T cd00116 2 QLSLKGEL------LKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSL- 73 (319)
T ss_pred ccccccCc------ccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHH-
Confidence 36676666 654456667778888999999999 55 3467777888899999998 5443222221110
Q ss_pred cccceecccccccCCccccccccccccccc--chhcccccccc---CCCceEEeccCCCCcCcccccHHHHhcc-CCcce
Q 045150 588 ELRHLIGKLIGTLPIENLTNLQTLKYVRCK--SWIRVNTAKLV---NLRELHIVGGDGQSMGEMEFSFESIAKL-KNLQF 661 (841)
Q Consensus 588 ~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~---~L~~L~l~~~~~~~~g~~~~~~~~l~~l-~~L~~ 661 (841)
...+..+++|+.|++.++. ...+..+..+. +|++|++++|.....+...+. ..+..+ ++|+.
T Consensus 74 -----------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~-~~l~~~~~~L~~ 141 (319)
T cd00116 74 -----------LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA-KGLKDLPPALEK 141 (319)
T ss_pred -----------HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH-HHHHhCCCCceE
Confidence 0113456677788887776 22334444444 499999999874422122222 566677 89999
Q ss_pred EEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC------CCccccccCCCccEEEEEeccCCCCCh----h
Q 045150 662 LSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT------LPKDMHVLLPNLECLSLKVVLPEENPM----P 731 (841)
Q Consensus 662 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~------~p~~~~~l~~~L~~L~L~~~~l~~~~~----~ 731 (841)
|++++|.+++..... ....+..+++|+.|+++++... ++..+... ++|+.|+|++|.+.+... .
T Consensus 142 L~L~~n~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~ 215 (319)
T cd00116 142 LVLGRNRLEGASCEA-----LAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAE 215 (319)
T ss_pred EEcCCCcCCchHHHH-----HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHH
Confidence 999999765321111 1122455678999999986432 22233343 799999999998865433 3
Q ss_pred hhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEE-----EccCcccccccccccccc
Q 045150 732 ALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQ-----VEERAMPMLRGLKIPSDI 803 (841)
Q Consensus 732 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~-----~~~~~~p~L~~L~l~~~c 803 (841)
.+..+++|++|++++|.+++.....-. .......+.|+.|++++|. +++.. .....+++|+.|+++ +|
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~-~~~~~~~~~L~~L~l~~n~--i~~~~~~~l~~~~~~~~~L~~l~l~-~N 288 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALA-SALLSPNISLLTLSLSCND--ITDDGAKDLAEVLAEKESLLELDLR-GN 288 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHH-HHHhccCCCceEEEccCCC--CCcHHHHHHHHHHhcCCCccEEECC-CC
Confidence 456788999999999876542110000 0001135799999999997 65321 112345889999998 55
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.14 E-value=3.8e-12 Score=128.52 Aligned_cols=249 Identities=19% Similarity=0.151 Sum_probs=167.3
Q ss_pred CceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcc-
Q 045150 482 SLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSS- 560 (841)
Q Consensus 482 ~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~- 560 (841)
+....+.+..|.+. ..++..|+.++.||.|||++|. |+. .-|+.|..|+.|..|-+-+++.|+.+|+.
T Consensus 67 ~~tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N~------Is~-I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKNN------ISF-IAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred CcceEEEeccCCcc----cCChhhccchhhhceecccccc------hhh-cChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 34566777777764 4778899999999999999999 774 67889999999988887774489999964
Q ss_pred cCCCCCCCeeecC-CcccccC-ccccccccccceec---cc-ccc-cCCccccccccccccccc-------ch-------
Q 045150 561 IFNLPGLQTLDLS-RCIVQLP-PETDMMRELRHLIG---KL-IGT-LPIENLTNLQTLKYVRCK-------SW------- 619 (841)
Q Consensus 561 i~~L~~L~~L~L~-~~~~~lp-~~~~~L~~L~~L~~---~~-~~~-~~i~~l~~L~~L~l~~~~-------~~------- 619 (841)
|++|..|+-|.+. +.+.-++ ..+..|++|..|.. .. ... ..+..+.+++++.+..+. .+
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence 7889999999999 7665544 46778888887732 11 111 236677777777665543 01
Q ss_pred hccccccccCCCceEEeccCC---------------------CCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCc
Q 045150 620 IRVNTAKLVNLRELHIVGGDG---------------------QSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSN 678 (841)
Q Consensus 620 ~~~~l~~l~~L~~L~l~~~~~---------------------~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 678 (841)
.+.+++.+....-..+.+.+. ...-....+...+..+++|+.|+|++|.++..-+.+++
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 111222221111111111100 00001111124678899999999999987765554433
Q ss_pred ccccCCCCCCCcccceeEeccccCC-CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCC
Q 045150 679 AFASLQPLSHCQRLVDLRLTGRMTT-LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDS 750 (841)
Q Consensus 679 ~~~~l~~l~~~~~L~~L~L~~~~~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~ 750 (841)
....++.|+|..|... +...++.-+.+|+.|+|.+|+++...+..|..+.+|..|+|-.|.+-
T Consensus 296 ---------~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 296 ---------GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred ---------chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 3456888888887543 44444433589999999999999888888999999999999887553
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.09 E-value=5e-12 Score=127.66 Aligned_cols=230 Identities=17% Similarity=0.122 Sum_probs=136.9
Q ss_pred eeeEEEeecCCcccccccccccch-hhccccCcceeeecCCCcCcccc-CcccCCCCCCCeeecC--CcccccCc-cccc
Q 045150 511 LLRVLEIEESGYFSRMLFDNRLHN-KKLGKLIHLKYLGIRGTTFIRDF-PSSIFNLPGLQTLDLS--RCIVQLPP-ETDM 585 (841)
Q Consensus 511 ~Lr~L~L~~~~~~~~~~l~~~~~p-~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~--~~~~~lp~-~~~~ 585 (841)
.-..+.|..|+ |+ .+| ..|+.+++||.|||++| .|..+ |..|..|.+|.+|-+. +++..+|. .|++
T Consensus 68 ~tveirLdqN~------I~--~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 68 ETVEIRLDQNQ------IS--SIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred cceEEEeccCC------cc--cCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 35668899999 88 666 57889999999999999 66654 8889999998887666 57888998 4678
Q ss_pred cccccceec-----ccccccCCccccccccccccccc-chhcc-ccccccCCCceEEeccCCCCcCccccc-------HH
Q 045150 586 MRELRHLIG-----KLIGTLPIENLTNLQTLKYVRCK-SWIRV-NTAKLVNLRELHIVGGDGQSMGEMEFS-------FE 651 (841)
Q Consensus 586 L~~L~~L~~-----~~~~~~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~g~~~~~-------~~ 651 (841)
|..|+.|.. .......+..|++|..|.++.+. ..+.. .+..+..++.+.+..|........+.. +.
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 888888832 11223337888888888888887 44444 677888888888766652111111000 00
Q ss_pred HHhccCCcceEEeeecCCCcc-----------CCCCC--cccc----cCCCCCCCcccceeEeccccCC--CCccccccC
Q 045150 652 SIAKLKNLQFLSVNLSDGTVV-----------LPQSS--NAFA----SLQPLSHCQRLVDLRLTGRMTT--LPKDMHVLL 712 (841)
Q Consensus 652 ~l~~l~~L~~L~l~~~~~~~~-----------~~~~~--~~~~----~l~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~ 712 (841)
.++.........+.+.++... .|... +..+ --..+..+++|+.|+|++|..+ -+.|+...
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~- 297 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA- 297 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch-
Confidence 111111111111111110000 00000 0000 0012455667777777776433 34455554
Q ss_pred CCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCC
Q 045150 713 PNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDS 750 (841)
Q Consensus 713 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~ 750 (841)
..+++|.|..|++....-..|.++..|+.|+|.+|+++
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 67777777777765444556667777777777777665
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.08 E-value=8.4e-09 Score=107.58 Aligned_cols=178 Identities=24% Similarity=0.208 Sum_probs=111.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
.++.|+|++|+||||+++.+++.... ..+ .++|+ +....+..+++..|+..++..... .+.......+.+
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-------~~~~~~~~~l~~ 113 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-------RDKAALLRELED 113 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-------CCHHHHHHHHHH
Confidence 47899999999999999999985221 221 22343 333457778888888888654211 112223333332
Q ss_pred ----Hc-cCceEEEEEecCCCh--hhHHHHHhhCC---CCCCCcEEEEEecchHHhhcCC---------CcceeEecCCC
Q 045150 272 ----SL-QGKTYLMVLDDVWRK--VDWENLRRAFP---DNKNGSRVIITTRNREVAERSD---------EKTYVHKLRFL 332 (841)
Q Consensus 272 ----~L-~~kr~LlVlDdv~~~--~~~~~l~~~l~---~~~~gs~ilvTtR~~~v~~~~~---------~~~~~~~l~~L 332 (841)
.. .+++.++|+||+|.. ..++.+..... .......|++|....- ..... .....+.++++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~-~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEF-RETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHH-HHHHcCchhHHHHhheeeeeeCCCC
Confidence 22 678899999999874 35555543222 1122234566655432 11110 11246789999
Q ss_pred ChhHHHHHHHhHhcCCCCC--CchhHHHHHHHHHHcCCCchHHHHHhhhh
Q 045150 333 RGDESWLLFCEKAFRGTNR--EKGLEKLGREMVEKCDGLPLAIVVLGGLL 380 (841)
Q Consensus 333 ~~~~~~~lf~~~~~~~~~~--~~~~~~~~~~i~~~c~glPlai~~~~~~L 380 (841)
+.+|..+++...+...... ..-..+..+.|++.++|.|..+..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999988776432211 12234778899999999999998888653
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.05 E-value=4.8e-09 Score=115.92 Aligned_cols=208 Identities=20% Similarity=0.172 Sum_probs=129.9
Q ss_pred CCCCCcccCCChHHHHHHHhcC-CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHH
Q 045150 165 VEENPVGFEDDTDVLLSKLLAG-DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRII 243 (841)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 243 (841)
.++.++||+++.+++...+... .......+.|+|++|+|||++++.++++.......-.+++|++....+...++..|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 4567999999999999998542 111334578999999999999999998422222123467777777778889999999
Q ss_pred HHhhhccccccCCCCCCCHHHHHHHHHHHcc--CceEEEEEecCCChh------hHHHHHhhCCCCCCCcE--EEEEecc
Q 045150 244 KSFNIISSAEEGGLENKSEEDLERCLYKSLQ--GKTYLMVLDDVWRKV------DWENLRRAFPDNKNGSR--VIITTRN 313 (841)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~--ilvTtR~ 313 (841)
.++...... ....+..++...+.+.++ +++.+||||+++... .+..+...+... .+++ +|.++..
T Consensus 108 ~~l~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~ 182 (394)
T PRK00411 108 RQLFGHPPP----SSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSD 182 (394)
T ss_pred HHhcCCCCC----CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECC
Confidence 998752111 112344667777777774 567899999997632 233333333222 2333 5666655
Q ss_pred hHHhhcCC------CcceeEecCCCChhHHHHHHHhHhcCC---CC-CCchhHHHHHHHHHHcCCCchHHHHHh
Q 045150 314 REVAERSD------EKTYVHKLRFLRGDESWLLFCEKAFRG---TN-REKGLEKLGREMVEKCDGLPLAIVVLG 377 (841)
Q Consensus 314 ~~v~~~~~------~~~~~~~l~~L~~~~~~~lf~~~~~~~---~~-~~~~~~~~~~~i~~~c~glPlai~~~~ 377 (841)
..+..... .....+.+.+++.++..+++..++-.. .. ++..+..+++......+..+.|+.++-
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 43332211 112567899999999999998876321 11 122333344444333556777766654
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.04 E-value=9.2e-10 Score=112.32 Aligned_cols=199 Identities=19% Similarity=0.155 Sum_probs=101.1
Q ss_pred CcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHH------
Q 045150 169 PVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRI------ 242 (841)
Q Consensus 169 ~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i------ 242 (841)
|+||+.++++|.+++..+. ...+.|+|+.|+|||+|++.+.+ ..+..-..++|+...+.... .....+
T Consensus 1 F~gR~~el~~l~~~l~~~~---~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~ 74 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP---SQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEESNE-SSLRSFIEETSL 74 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBSHH-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc---CcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccchhh-hHHHHHHHHHHH
Confidence 6899999999999998753 35889999999999999999998 34322224555554443322 222222
Q ss_pred ----HHHhhhccccccC----CCCCCCHHHHHHHHHHHc--cCceEEEEEecCCChh-h-------HHHHH---hhCCCC
Q 045150 243 ----IKSFNIISSAEEG----GLENKSEEDLERCLYKSL--QGKTYLMVLDDVWRKV-D-------WENLR---RAFPDN 301 (841)
Q Consensus 243 ----~~~l~~~~~~~~~----~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~-~-------~~~l~---~~l~~~ 301 (841)
...+......... .............+.+.+ .+++++||+||+.... . ...+. ......
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 154 (234)
T PF01637_consen 75 ADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ 154 (234)
T ss_dssp HCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----
T ss_pred HHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc
Confidence 1222221110000 000011122233333334 3456999999996544 1 11222 222223
Q ss_pred CCCcEEEEEecchHHhhc-------CCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHH
Q 045150 302 KNGSRVIITTRNREVAER-------SDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 302 ~~gs~ilvTtR~~~v~~~-------~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 374 (841)
.+.+ +|+++....+... .......+.+++++.+++++++...+-.. ..-+.-.+..++|...++|.|..+.
T Consensus 155 ~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 155 QNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred CCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHh
Confidence 3334 4455444443332 11122459999999999999998865333 1111234556899999999998875
Q ss_pred H
Q 045150 375 V 375 (841)
Q Consensus 375 ~ 375 (841)
.
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 3
No 29
>PF05729 NACHT: NACHT domain
Probab=99.00 E-value=2.7e-09 Score=102.32 Aligned_cols=141 Identities=21% Similarity=0.237 Sum_probs=87.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCC----CCcEEEEEeCCccCHH---HHHHHHHHHhhhccccccCCCCCCCHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNK----FECCAWVSVSQDYQFQ---YLLLRIIKSFNIISSAEEGGLENKSEED 264 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 264 (841)
+++.|+|.+|+||||+++.++.+-.-... +...+|+......... .+...|..+..... ..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~------------~~ 68 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI------------AP 68 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch------------hh
Confidence 47899999999999999999974221211 4567777765544332 23333333322110 01
Q ss_pred HHHHHHHHc-cCceEEEEEecCCChhh---------HHH-HHhhCCC-CCCCcEEEEEecchHH---hhcCCCcceeEec
Q 045150 265 LERCLYKSL-QGKTYLMVLDDVWRKVD---------WEN-LRRAFPD-NKNGSRVIITTRNREV---AERSDEKTYVHKL 329 (841)
Q Consensus 265 ~~~~l~~~L-~~kr~LlVlDdv~~~~~---------~~~-l~~~l~~-~~~gs~ilvTtR~~~v---~~~~~~~~~~~~l 329 (841)
....+...+ +.++++||+|++++... +.. +...++. ..++.+++||+|.... ...... ...+++
T Consensus 69 ~~~~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~-~~~~~l 147 (166)
T PF05729_consen 69 IEELLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQ-AQILEL 147 (166)
T ss_pred hHHHHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCC-CcEEEE
Confidence 111222222 68899999999976422 222 3333443 3568999999998776 232322 268999
Q ss_pred CCCChhHHHHHHHhHh
Q 045150 330 RFLRGDESWLLFCEKA 345 (841)
Q Consensus 330 ~~L~~~~~~~lf~~~~ 345 (841)
.+|++++..+++.+..
T Consensus 148 ~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 148 EPFSEEDIKQYLRKYF 163 (166)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999887654
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.2e-10 Score=119.43 Aligned_cols=90 Identities=21% Similarity=0.203 Sum_probs=52.9
Q ss_pred CCccEEEEEeccCCCCC-hhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEc--cC
Q 045150 713 PNLECLSLKVVLPEENP-MPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVE--ER 789 (841)
Q Consensus 713 ~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~--~~ 789 (841)
..|+.|+|++|.+.... ....+.+|.|..|+++.+.+++..............||+|++|.+..|+ +.+|+.- ..
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~--I~~w~sl~~l~ 323 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN--IRDWRSLNHLR 323 (505)
T ss_pred hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc--cccccccchhh
Confidence 55677777776553322 2455667777777777666655443333223334567777777777776 6666432 23
Q ss_pred ccccccccccccccCCC
Q 045150 790 AMPMLRGLKIPSDIPNL 806 (841)
Q Consensus 790 ~~p~L~~L~l~~~c~~L 806 (841)
.+++|+.|.+. |+.+
T Consensus 324 ~l~nlk~l~~~--~n~l 338 (505)
T KOG3207|consen 324 TLENLKHLRIT--LNYL 338 (505)
T ss_pred ccchhhhhhcc--cccc
Confidence 45666766665 5555
No 31
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.91 E-value=4.7e-08 Score=106.84 Aligned_cols=206 Identities=18% Similarity=0.147 Sum_probs=124.3
Q ss_pred CCCCcccCCChHHHHHHHhcCC-CCCeEEEEEEccCCCcHHHHHHHHhcCccc-cCCC---CcEEEEEeCCccCHHHHHH
Q 045150 166 EENPVGFEDDTDVLLSKLLAGD-EPRRLVISIYGMGGLGKTTLAKKLYHSSDV-KNKF---ECCAWVSVSQDYQFQYLLL 240 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F---~~~~wv~vs~~~~~~~~~~ 240 (841)
++.++||++++++|...+...- ......+.|+|++|+|||++++.+++.-.- .... -..+|+.+....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 4579999999999999987421 113356899999999999999999984110 0111 1357888877778889999
Q ss_pred HHHHHhhhccccccCCCCCCCHHHHHHHHHHHc--cCceEEEEEecCCChh-----hHHHHHhhC-CCCC--CCcEEEEE
Q 045150 241 RIIKSFNIISSAEEGGLENKSEEDLERCLYKSL--QGKTYLMVLDDVWRKV-----DWENLRRAF-PDNK--NGSRVIIT 310 (841)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~-----~~~~l~~~l-~~~~--~gs~ilvT 310 (841)
.|+.++.......+ ....+..+....+.+.+ .+++++||||+++... ....+.... .... ....+|.+
T Consensus 94 ~i~~~l~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 94 ELANQLRGSGEEVP--TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHhhcCCCCC--CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 99999953000000 11123355556666666 3668999999997651 122222221 1111 12234555
Q ss_pred ecchHHhhcCC------CcceeEecCCCChhHHHHHHHhHhcC---CCCCCchhHHHHHHHHHHcCCCchHH
Q 045150 311 TRNREVAERSD------EKTYVHKLRFLRGDESWLLFCEKAFR---GTNREKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 311 tR~~~v~~~~~------~~~~~~~l~~L~~~~~~~lf~~~~~~---~~~~~~~~~~~~~~i~~~c~glPlai 373 (841)
|.......... .....+.+++.+.++..+++..++-. ...-.++..+...+++....|.|..+
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 54333211111 11256889999999999999887631 11113333344556677777887544
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=1.4e-09 Score=106.13 Aligned_cols=134 Identities=22% Similarity=0.171 Sum_probs=91.2
Q ss_pred cccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC
Q 045150 624 TAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT 703 (841)
Q Consensus 624 l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~ 703 (841)
+.....|++|++++|.+. .+. ++..-.+.++.|+++.|.+. ....+..+++|+.|+|++|..+
T Consensus 280 ~dTWq~LtelDLS~N~I~-----~iD-ESvKL~Pkir~L~lS~N~i~-----------~v~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-----QID-ESVKLAPKLRRLILSQNRIR-----------TVQNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred cchHhhhhhccccccchh-----hhh-hhhhhccceeEEecccccee-----------eehhhhhcccceEeecccchhH
Confidence 334456677777777633 122 56666678888888877432 2233566778888888887543
Q ss_pred -CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCce
Q 045150 704 -LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIV 782 (841)
Q Consensus 704 -~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~ 782 (841)
+..|-..+ .|.++|.|+.|.+ ..++.+++|-+|..|++++|++.... -+.+.+.+|+|+.|.+.+|| +.
T Consensus 343 ~~~Gwh~KL-GNIKtL~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ld-----eV~~IG~LPCLE~l~L~~NP--l~ 412 (490)
T KOG1259|consen 343 ECVGWHLKL-GNIKTLKLAQNKI--ETLSGLRKLYSLVNLDLSSNQIEELD-----EVNHIGNLPCLETLRLTGNP--LA 412 (490)
T ss_pred hhhhhHhhh-cCEeeeehhhhhH--hhhhhhHhhhhheeccccccchhhHH-----HhcccccccHHHHHhhcCCC--cc
Confidence 55565565 8899999999887 35677888888999999888664321 12345678888888888888 65
Q ss_pred EE
Q 045150 783 EW 784 (841)
Q Consensus 783 ~~ 784 (841)
.+
T Consensus 413 ~~ 414 (490)
T KOG1259|consen 413 GS 414 (490)
T ss_pred cc
Confidence 54
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.83 E-value=4.1e-10 Score=112.64 Aligned_cols=246 Identities=21% Similarity=0.239 Sum_probs=143.3
Q ss_pred hHHhccCceeeEEEeecCCccccccccc---ccchhhccccCcceeeecCCC---cCccccCcc-------cCCCCCCCe
Q 045150 503 APLFKRFLLLRVLEIEESGYFSRMLFDN---RLHNKKLGKLIHLKYLGIRGT---TFIRDFPSS-------IFNLPGLQT 569 (841)
Q Consensus 503 ~~~~~~~~~Lr~L~L~~~~~~~~~~l~~---~~~p~~i~~L~~L~~L~L~~~---~~~~~lp~~-------i~~L~~L~~ 569 (841)
......+..+..|+|++|. |.. ..+...+.+.+.|+..++++- +...++|+. +-.+++|++
T Consensus 23 ~~~~~~~~s~~~l~lsgnt------~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ 96 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNT------FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQK 96 (382)
T ss_pred HHHhcccCceEEEeccCCc------hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeE
Confidence 3455677788888888887 542 023345667778888888754 112245543 345678888
Q ss_pred eecC-Cccc-ccCccccccccccceecccccccCCccccccccccccccc-c-----h---------hccccccccCCCc
Q 045150 570 LDLS-RCIV-QLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK-S-----W---------IRVNTAKLVNLRE 632 (841)
Q Consensus 570 L~L~-~~~~-~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~-----~---------~~~~l~~l~~L~~ 632 (841)
|||| |-+. .-+..+..+ +.++++|++|.+.+|+ + . ...-.++-++|+.
T Consensus 97 ldLSDNA~G~~g~~~l~~l---------------l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv 161 (382)
T KOG1909|consen 97 LDLSDNAFGPKGIRGLEEL---------------LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRV 161 (382)
T ss_pred eeccccccCccchHHHHHH---------------HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEE
Confidence 8888 4322 122222211 3445666666666665 1 1 1122445677888
Q ss_pred eEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC------CCc
Q 045150 633 LHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT------LPK 706 (841)
Q Consensus 633 L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~------~p~ 706 (841)
+....|.....|...+. ..+...+.|+.+.+..|.+.. .... + -...+.+|++|+.|+|..|..+ +-.
T Consensus 162 ~i~~rNrlen~ga~~~A-~~~~~~~~leevr~~qN~I~~---eG~~-a-l~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 162 FICGRNRLENGGATALA-EAFQSHPTLEEVRLSQNGIRP---EGVT-A-LAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred EEeeccccccccHHHHH-HHHHhccccceEEEecccccC---chhH-H-HHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 88888876644444444 677777888888888874322 2211 1 2344677888888888876422 111
Q ss_pred cccccCCCccEEEEEeccCCCCChhhh-----hhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccc
Q 045150 707 DMHVLLPNLECLSLKVVLPEENPMPAL-----EMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVE 778 (841)
Q Consensus 707 ~~~~l~~~L~~L~L~~~~l~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 778 (841)
.+..+ ++|+.|++++|.+.......+ ...|+|+.|.+.+|.++..... .+......-|.|+.|.|++|.
T Consensus 236 aL~s~-~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~--~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 236 ALSSW-PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL--ALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred Hhccc-chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH--HHHHHHhcchhhHHhcCCccc
Confidence 22222 788888888888765544333 2467888888888755432210 011111236677777777775
No 34
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=1.1e-07 Score=117.44 Aligned_cols=199 Identities=17% Similarity=0.181 Sum_probs=123.4
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeC-CccCHHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVS-QDYQFQYLLLRIIKS 245 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~ 245 (841)
..+|-|. ++.+.|.... ..+++.|+|++|.||||++..+... ++.++|+++. .+.++......++..
T Consensus 14 ~~~~~R~----rl~~~l~~~~--~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 14 HNTVVRE----RLLAKLSGAN--NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred cccCcch----HHHHHHhccc--CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHH
Confidence 3455555 4444444332 4679999999999999999998862 2369999986 445667777888888
Q ss_pred hhhccccccC-------CCCCCCHHHHHHHHHHHc-c-CceEEEEEecCCChh--h-HHHHHhhCCCCCCCcEEEEEecc
Q 045150 246 FNIISSAEEG-------GLENKSEEDLERCLYKSL-Q-GKTYLMVLDDVWRKV--D-WENLRRAFPDNKNGSRVIITTRN 313 (841)
Q Consensus 246 l~~~~~~~~~-------~~~~~~~~~~~~~l~~~L-~-~kr~LlVlDdv~~~~--~-~~~l~~~l~~~~~gs~ilvTtR~ 313 (841)
+......... .....+...+...+...+ . +.+++|||||+...+ . .+.+...++....+.++|||||.
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 8532211100 001112223333333333 2 689999999996532 2 23344444444556788899997
Q ss_pred hHHhh--cCCCcceeEecC----CCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHhhhhcC
Q 045150 314 REVAE--RSDEKTYVHKLR----FLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLGGLLST 382 (841)
Q Consensus 314 ~~v~~--~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~ 382 (841)
..-.. .........++. +|+.+|+.++|...... +--.+...+|.+.|+|.|+++..++..+..
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-----~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-----PIEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-----CCCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 42111 100111345555 99999999999765422 112355678999999999999988866543
No 35
>PRK06893 DNA replication initiation factor; Validated
Probab=98.67 E-value=2.2e-07 Score=93.45 Aligned_cols=149 Identities=15% Similarity=0.258 Sum_probs=92.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
..+.|+|..|+|||+||+.+++. .......+.|+++.... ... ..+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~---------------------------~~~~~ 87 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFS---------------------------PAVLE 87 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhh---------------------------HHHHh
Confidence 56899999999999999999984 43334456777753100 000 01111
Q ss_pred HccCceEEEEEecCCCh---hhHHH-HHhhCCC-CCCCcEEEEEecc----------hHHhhcCCCcceeEecCCCChhH
Q 045150 272 SLQGKTYLMVLDDVWRK---VDWEN-LRRAFPD-NKNGSRVIITTRN----------REVAERSDEKTYVHKLRFLRGDE 336 (841)
Q Consensus 272 ~L~~kr~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~ilvTtR~----------~~v~~~~~~~~~~~~l~~L~~~~ 336 (841)
.+. +.-+||+||+|.. ..|+. +...+.. ...|+.+||+|.+ +.+.+.+... ..++++++++++
T Consensus 88 ~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g-~~~~l~~pd~e~ 165 (229)
T PRK06893 88 NLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG-EIYQLNDLTDEQ 165 (229)
T ss_pred hcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC-CeeeCCCCCHHH
Confidence 122 2248999999863 45553 3332322 1235556554443 3455544433 688999999999
Q ss_pred HHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHH
Q 045150 337 SWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 337 ~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
.++++.+.++.... .--.++..-|++++.|..-.+..+
T Consensus 166 ~~~iL~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 166 KIIVLQRNAYQRGI--ELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHH
Confidence 99999998875432 223466778888888777665443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=6e-09 Score=107.32 Aligned_cols=86 Identities=22% Similarity=0.166 Sum_probs=46.4
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccc-cchhhccccCcceeeecCCCcCccccC
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNR-LHNKKLGKLIHLKYLGIRGTTFIRDFP 558 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~-~~p~~i~~L~~L~~L~L~~~~~~~~lp 558 (841)
..++||.+.+.+..... .......+.|+++|.|||++|- +.+. .+......|++|+.|+|+.|. +...-
T Consensus 119 n~kkL~~IsLdn~~V~~---~~~~~~~k~~~~v~~LdLS~NL------~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~ 188 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVED---AGIEEYSKILPNVRDLDLSRNL------FHNWFPVLKIAEQLPSLENLNLSSNR-LSNFI 188 (505)
T ss_pred hHHhhhheeecCccccc---cchhhhhhhCCcceeecchhhh------HHhHHHHHHHHHhcccchhccccccc-ccCCc
Confidence 56677777777665531 0111456677777777777775 3311 223345567777777777773 22111
Q ss_pred cc--cCCCCCCCeeecC-Cc
Q 045150 559 SS--IFNLPGLQTLDLS-RC 575 (841)
Q Consensus 559 ~~--i~~L~~L~~L~L~-~~ 575 (841)
++ -..+.+|+.|.|+ |.
T Consensus 189 ~s~~~~~l~~lK~L~l~~CG 208 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSCG 208 (505)
T ss_pred cccchhhhhhhheEEeccCC
Confidence 11 1134555666665 54
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.60 E-value=3.1e-09 Score=106.47 Aligned_cols=254 Identities=16% Similarity=0.101 Sum_probs=162.8
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchh-------hccccCcceeeecCCCc
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNK-------KLGKLIHLKYLGIRGTT 552 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~-------~i~~L~~L~~L~L~~~~ 552 (841)
....+..+.++++.+..--...+...+.+-+.||.-+++.-- +..... ++|. .+-.+++|++|+||+|
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f--tGR~~~--Ei~e~L~~l~~aL~~~~~L~~ldLSDN- 102 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF--TGRLKD--EIPEALKMLSKALLGCPKLQKLDLSDN- 102 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh--cCCcHH--HHHHHHHHHHHHHhcCCceeEeecccc-
Confidence 456677788888766432234566778888899999888642 111011 3443 4556779999999999
Q ss_pred Ccc-c----cCcccCCCCCCCeeecC-CcccccCcccccc-ccccceecccccccCCccccccccccccccc------ch
Q 045150 553 FIR-D----FPSSIFNLPGLQTLDLS-RCIVQLPPETDMM-RELRHLIGKLIGTLPIENLTNLQTLKYVRCK------SW 619 (841)
Q Consensus 553 ~~~-~----lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L-~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~------~~ 619 (841)
-+. . +-.-+..++.|+.|.|. |.+...-. ..+ .-|.+|... ..+++-++|+.+...+|. ..
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag--~~l~~al~~l~~~----kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAG--GRLGRALFELAVN----KKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHH--HHHHHHHHHHHHH----hccCCCcceEEEEeeccccccccHHH
Confidence 333 2 22335678999999998 54432111 111 112233110 113445678888777776 23
Q ss_pred hccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecc
Q 045150 620 IRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTG 699 (841)
Q Consensus 620 ~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~ 699 (841)
....+...+.|+.+.+..|.+...|...+. ..+..+++|+.|+|..|.++...... .-..++.+++|+.|+++.
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~-eal~~~~~LevLdl~DNtft~egs~~-----LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALA-EALEHCPHLEVLDLRDNTFTLEGSVA-----LAKALSSWPHLRELNLGD 250 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHH-HHHHhCCcceeeecccchhhhHHHHH-----HHHHhcccchheeecccc
Confidence 445677788999999999887656553444 78899999999999999665422111 123366677899999998
Q ss_pred ccCC------CCccccccCCCccEEEEEeccCCCCCh----hhhhhcccCCeEEEecccCC
Q 045150 700 RMTT------LPKDMHVLLPNLECLSLKVVLPEENPM----PALEMLSNLTILDLNFYRDS 750 (841)
Q Consensus 700 ~~~~------~p~~~~~l~~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~N~l~ 750 (841)
+..+ +-..+....|+|+.|.|.+|.++...- ..+...|.|..|+|++|.+.
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 6533 222222335899999999998875432 23456899999999998763
No 38
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=1.5e-06 Score=92.33 Aligned_cols=176 Identities=16% Similarity=0.209 Sum_probs=114.6
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC----ccccCCCCcEEEEE-eCCccCHHHHHHHH
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS----SDVKNKFECCAWVS-VSQDYQFQYLLLRI 242 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 242 (841)
+++|-+..++.+..++..+. -.....++|+.|+||||+|+.+++. .....|.|...|.. -+.....++ ++++
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~--~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR--FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC--CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 57888888888888887654 3457889999999999999999873 12235666666654 223333333 2233
Q ss_pred HHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCC--ChhhHHHHHhhCCCCCCCcEEEEEecchH-Hhhc
Q 045150 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVW--RKVDWENLRRAFPDNKNGSRVIITTRNRE-VAER 319 (841)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~ 319 (841)
.+.+...+ ..+++-++|+|+++ +...++.+...+.....++.+|++|.+.+ +...
T Consensus 82 ~~~~~~~p----------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~T 139 (313)
T PRK05564 82 IEEVNKKP----------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDT 139 (313)
T ss_pred HHHHhcCc----------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 33332111 12445566666664 55789999999988778898888886554 2222
Q ss_pred CCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHH
Q 045150 320 SDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 320 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 374 (841)
.......+.+.++++++....+...+.+ ...+.+..++..++|.|.-+.
T Consensus 140 I~SRc~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 140 IKSRCQIYKLNRLSKEEIEKFISYKYND------IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHhhceeeeCCCcCHHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHH
Confidence 2222378999999999998877654311 112346678899999987654
No 39
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.56 E-value=7.4e-07 Score=98.28 Aligned_cols=174 Identities=21% Similarity=0.181 Sum_probs=101.8
Q ss_pred CCcccCCChHH---HHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHH
Q 045150 168 NPVGFEDDTDV---LLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIK 244 (841)
Q Consensus 168 ~~vGr~~~~~~---l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 244 (841)
++||.+..+.. +..++... ....+.++|++|+||||+|+.+++. ....| +.++....-.+-++.++.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~---~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG---RLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLREVIE 82 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC---CCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHHHHHH
Confidence 57887766544 66666544 3456788999999999999999983 33332 222221111111122222
Q ss_pred HhhhccccccCCCCCCCHHHHHHHHHHH-ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEE--EecchH--Hh
Q 045150 245 SFNIISSAEEGGLENKSEEDLERCLYKS-LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVII--TTRNRE--VA 317 (841)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv--TtR~~~--v~ 317 (841)
+ .... ..+++.+|++|+++.. ...+.+...+.. |..+++ ||.+.. +.
T Consensus 83 ~-----------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~ 136 (413)
T PRK13342 83 E-----------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVN 136 (413)
T ss_pred H-----------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhcc
Confidence 1 1111 1467889999999864 344555555542 444554 344332 11
Q ss_pred hcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCC-chhHHHHHHHHHHcCCCchHHHHHh
Q 045150 318 ERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNRE-KGLEKLGREMVEKCDGLPLAIVVLG 377 (841)
Q Consensus 318 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~-~~~~~~~~~i~~~c~glPlai~~~~ 377 (841)
.........+.+.+++.++.+.++.+.+....... .-..+..+.|++.|+|.+..+..+.
T Consensus 137 ~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 137 PALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11112226889999999999999988653211111 2234567788999999997664433
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.55 E-value=2.2e-08 Score=94.51 Aligned_cols=84 Identities=23% Similarity=0.126 Sum_probs=27.2
Q ss_pred CcccceeEeccccCCCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCccc
Q 045150 689 CQRLVDLRLTGRMTTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPL 768 (841)
Q Consensus 689 ~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~ 768 (841)
+.+|+.|++++|..+--+.+..+ ++|+.|++++|.++.........+|+|+.|++++|++....-. .....+|+
T Consensus 41 l~~L~~L~Ls~N~I~~l~~l~~L-~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l-----~~L~~l~~ 114 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLEGLPGL-PRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNEL-----EPLSSLPK 114 (175)
T ss_dssp -TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCC-----GGGGG-TT
T ss_pred hcCCCEEECCCCCCccccCccCh-hhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHh-----HHHHcCCC
Confidence 44566666666533322234444 6677777777776543222223567777777776665443211 11234667
Q ss_pred ccceeccccc
Q 045150 769 LEILLLDAVE 778 (841)
Q Consensus 769 L~~L~l~~~~ 778 (841)
|+.|++.+||
T Consensus 115 L~~L~L~~NP 124 (175)
T PF14580_consen 115 LRVLSLEGNP 124 (175)
T ss_dssp --EEE-TT-G
T ss_pred cceeeccCCc
Confidence 7777777776
No 41
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.53 E-value=3.4e-07 Score=97.26 Aligned_cols=196 Identities=17% Similarity=0.078 Sum_probs=108.9
Q ss_pred CCcccCCChHHHHHHHhcC--CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHH
Q 045150 168 NPVGFEDDTDVLLSKLLAG--DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKS 245 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 245 (841)
+|||+++.++++..++... .......+.++|++|+|||+||+.+.+. ....| ..+..+...... .+...+..
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~-~l~~~l~~ 78 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPG-DLAAILTN 78 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCch-hHHHHHHh
Confidence 5899999999998888632 1113456889999999999999999983 33222 122211111111 12222233
Q ss_pred hhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchHHhhcCCCc-c
Q 045150 246 FNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNREVAERSDEK-T 324 (841)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~-~ 324 (841)
+....----+++...+ ....+.+...+.+.+..+|+|+..+...|. ..+ .+.+-|..||+...+....... .
T Consensus 79 ~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~---~~~---~~~~li~~t~~~~~l~~~l~sR~~ 151 (305)
T TIGR00635 79 LEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVR---LDL---PPFTLVGATTRAGMLTSPLRDRFG 151 (305)
T ss_pred cccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccccee---ecC---CCeEEEEecCCccccCHHHHhhcc
Confidence 2211000000111111 122344555555666666666654433221 111 1245566677765433321111 1
Q ss_pred eeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHhh
Q 045150 325 YVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLGG 378 (841)
Q Consensus 325 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 378 (841)
..+.+++++.++..+++.+.+..... .-..+....|++.|+|.|..+..++.
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 56889999999999999987753322 22245668899999999976654443
No 42
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.53 E-value=4e-08 Score=92.68 Aligned_cols=128 Identities=25% Similarity=0.265 Sum_probs=38.5
Q ss_pred ccCceeeEEEeecCCcccccccccccchhhcc-ccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCcccc
Q 045150 507 KRFLLLRVLEIEESGYFSRMLFDNRLHNKKLG-KLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETD 584 (841)
Q Consensus 507 ~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~-~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~ 584 (841)
.+...+|.|+|++|. |+ .+ +.++ .+.+|+.|+|++| .+..++. +..|++|++|+++ +.+..++..+.
T Consensus 16 ~n~~~~~~L~L~~n~------I~--~I-e~L~~~l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQ------IS--TI-ENLGATLDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS---S-CHHHH
T ss_pred ccccccccccccccc------cc--cc-cchhhhhcCCCEEECCCC-CCccccC-ccChhhhhhcccCCCCCCccccchH
Confidence 344456777777777 65 33 3455 4667777777777 6666653 6677777777777 55555554332
Q ss_pred -ccccccceecccccccCCccccccccccccccc---chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcc
Q 045150 585 -MMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK---SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQ 660 (841)
Q Consensus 585 -~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~ 660 (841)
.+++|++| ++.+|. -.....+..+++|+.|++.+|..... .......+..+++|+
T Consensus 85 ~~lp~L~~L-------------------~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~--~~YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 85 KNLPNLQEL-------------------YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK--KNYRLFVIYKLPSLK 143 (175)
T ss_dssp HH-TT--EE-------------------E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS--TTHHHHHHHH-TT-S
T ss_pred HhCCcCCEE-------------------ECcCCcCCChHHhHHHHcCCCcceeeccCCcccch--hhHHHHHHHHcChhh
Confidence 23333333 333333 11223445666777777776654311 111124566677777
Q ss_pred eEEeee
Q 045150 661 FLSVNL 666 (841)
Q Consensus 661 ~L~l~~ 666 (841)
.|+-..
T Consensus 144 ~LD~~~ 149 (175)
T PF14580_consen 144 VLDGQD 149 (175)
T ss_dssp EETTEE
T ss_pred eeCCEE
Confidence 776553
No 43
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.52 E-value=7.3e-07 Score=91.86 Aligned_cols=153 Identities=22% Similarity=0.237 Sum_probs=91.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCL 269 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 269 (841)
.+.-..+||++|+||||||+.+.. .....|. .+|-..+-.+=++.++++..
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvkdlr~i~e~a~---------------------- 97 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVKDLREIIEEAR---------------------- 97 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHHHHHHHHHHHH----------------------
Confidence 456677999999999999999998 4555552 23322222222222222211
Q ss_pred HHHccCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEE--EecchHHh--hcCCCcceeEecCCCChhHHHHHHHhHh
Q 045150 270 YKSLQGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVII--TTRNREVA--ERSDEKTYVHKLRFLRGDESWLLFCEKA 345 (841)
Q Consensus 270 ~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~--~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (841)
+....++|.+|++|.|..-.. .+--..+|...+|.-|+| ||-+.... ...-....++++++|+.++-.+++.+.+
T Consensus 98 ~~~~~gr~tiLflDEIHRfnK-~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 98 KNRLLGRRTILFLDEIHRFNK-AQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred HHHhcCCceEEEEehhhhcCh-hhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 122358999999999975321 122345666677887776 66665421 1112223799999999999999998844
Q ss_pred cCCCCC-C---chh-HHHHHHHHHHcCCCchH
Q 045150 346 FRGTNR-E---KGL-EKLGREMVEKCDGLPLA 372 (841)
Q Consensus 346 ~~~~~~-~---~~~-~~~~~~i~~~c~glPla 372 (841)
...... . ..+ .+...-++..++|--.+
T Consensus 177 ~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 177 LDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 322221 1 112 33556677777776543
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=2.9e-08 Score=97.06 Aligned_cols=132 Identities=18% Similarity=0.131 Sum_probs=102.6
Q ss_pred Cccccccccccccccc-chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCccc
Q 045150 602 IENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAF 680 (841)
Q Consensus 602 i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 680 (841)
+.....|.+|++++|. ..+..+..-++.++.|+++.|..... ..+..+++|+.|+|++|.++.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v-------~nLa~L~~L~~LDLS~N~Ls~--------- 343 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV-------QNLAELPQLQLLDLSGNLLAE--------- 343 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee-------hhhhhcccceEeecccchhHh---------
Confidence 5566789999999998 66777788889999999999874422 568889999999999995432
Q ss_pred ccCCCC-CCCcccceeEeccccCCCCccccccCCCccEEEEEeccCCC-CChhhhhhcccCCeEEEecccCCCC
Q 045150 681 ASLQPL-SHCQRLVDLRLTGRMTTLPKDMHVLLPNLECLSLKVVLPEE-NPMPALEMLSNLTILDLNFYRDSGD 752 (841)
Q Consensus 681 ~~l~~l-~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~ 752 (841)
+..+ ..+.|.+.|.|++|....-+.+..+ -+|..|++++|++.. +....+|+||+|+.|.|.+|.+.+.
T Consensus 344 --~~Gwh~KLGNIKtL~La~N~iE~LSGL~KL-YSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 344 --CVGWHLKLGNIKTLKLAQNKIETLSGLRKL-YSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred --hhhhHhhhcCEeeeehhhhhHhhhhhhHhh-hhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 1111 1355899999999876655677777 899999999998854 2346789999999999999877653
No 45
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=5.1e-07 Score=81.93 Aligned_cols=120 Identities=20% Similarity=0.233 Sum_probs=80.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
+++.|.|+.|+||||++++++++.. .-..+++++........... .+..+.+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~-----------------------~~~~~~~~~ 56 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD-----------------------PDLLEYFLE 56 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh-----------------------hhhHHHHHH
Confidence 5899999999999999999997422 33456777654432111000 002233333
Q ss_pred HccCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchHHhhc-----CCCcceeEecCCCChhHH
Q 045150 272 SLQGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNREVAER-----SDEKTYVHKLRFLRGDES 337 (841)
Q Consensus 272 ~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~-----~~~~~~~~~l~~L~~~~~ 337 (841)
...+++.+++||++....+|......+.+..+..+|++|+........ ..+....+++.||+-.|.
T Consensus 57 ~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 57 LIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 344578899999999888888877777765566889999987765532 223336789999987763
No 46
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.45 E-value=1.1e-06 Score=94.07 Aligned_cols=197 Identities=18% Similarity=0.104 Sum_probs=105.0
Q ss_pred CCCcccCCChHHHHHHHhcC--CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAG--DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIK 244 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 244 (841)
.+++|+++.++.+...+... .......+.|+|++|+||||||+.+++. ....+ .++..+. ......+..++.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~~-~~~~~~l~~~l~ 98 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGPA-LEKPGDLAAILT 98 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEeccc-ccChHHHHHHHH
Confidence 46999999999988777632 1113457889999999999999999984 33222 1222111 111122222332
Q ss_pred HhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchHHhhcCCCc-
Q 045150 245 SFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNREVAERSDEK- 323 (841)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~- 323 (841)
.+....----+++...+ ....+.+...+.+.+..+|+|+..+... +...+| +.+-|..|++...+.......
T Consensus 99 ~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~---~~~~l~---~~~li~at~~~~~l~~~L~sRf 171 (328)
T PRK00080 99 NLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARS---IRLDLP---PFTLIGATTRAGLLTSPLRDRF 171 (328)
T ss_pred hcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccc---eeecCC---CceEEeecCCcccCCHHHHHhc
Confidence 22110000000001111 1122233344444444555554432211 001111 234455677654333221000
Q ss_pred ceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHhh
Q 045150 324 TYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLGG 378 (841)
Q Consensus 324 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 378 (841)
...+++++++.++..+++.+.+..... .--.+....|++.|+|.|-.+..+..
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHH
Confidence 156899999999999999988754332 22345688999999999976555443
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.1e-08 Score=99.88 Aligned_cols=161 Identities=19% Similarity=0.131 Sum_probs=90.3
Q ss_pred ccccccccccccccc--chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCccc
Q 045150 603 ENLTNLQTLKYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAF 680 (841)
Q Consensus 603 ~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 680 (841)
+.+.+|+.|.+-++. ..+...+.+-.+|+.|+++.+..- . ...+. ..+.+++.|..|+|+||..+...-..
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~-t-~n~~~-ll~~scs~L~~LNlsWc~l~~~~Vtv---- 279 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF-T-ENALQ-LLLSSCSRLDELNLSWCFLFTEKVTV---- 279 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeecccccccc-c-hhHHH-HHHHhhhhHhhcCchHhhccchhhhH----
Confidence 344555555555555 445556777788888888877522 1 22222 45678888999999988543311000
Q ss_pred ccCCCCCCCcccceeEeccccCCCCc-ccccc---CCCccEEEEEec-cCCCCChhhhhhcccCCeEEEecccCCCCCcc
Q 045150 681 ASLQPLSHCQRLVDLRLTGRMTTLPK-DMHVL---LPNLECLSLKVV-LPEENPMPALEMLSNLTILDLNFYRDSGDPYH 755 (841)
Q Consensus 681 ~~l~~l~~~~~L~~L~L~~~~~~~p~-~~~~l---~~~L~~L~L~~~-~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 755 (841)
... .--++|..|+|+|+...+-. .+..+ +|+|..|+|++| .++......|-+++.|++|.++.|.. .
T Consensus 280 -~V~--hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~-----i 351 (419)
T KOG2120|consen 280 -AVA--HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD-----I 351 (419)
T ss_pred -HHh--hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC-----C
Confidence 001 11246778888876433211 22211 677778888776 44444445566777777777766421 1
Q ss_pred ccceEEcCCCcccccceeccccc
Q 045150 756 EKKLSCRAEGFPLLEILLLDAVE 778 (841)
Q Consensus 756 ~~~~~~~~~~f~~L~~L~l~~~~ 778 (841)
...........|+|.+|++.+|-
T Consensus 352 ~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 352 IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ChHHeeeeccCcceEEEEecccc
Confidence 11222233456677777766664
No 48
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.44 E-value=9.8e-09 Score=109.00 Aligned_cols=166 Identities=21% Similarity=0.238 Sum_probs=95.9
Q ss_pred eEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccc
Q 045150 513 RVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRH 591 (841)
Q Consensus 513 r~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~ 591 (841)
...||+.|. +. ++|..++.+..|..|.|..| .+..+|..+++|..|.+|||+ +.+..+|..+..|+ |+.
T Consensus 78 ~~aDlsrNR------~~--elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 78 VFADLSRNR------FS--ELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKV 147 (722)
T ss_pred hhhhccccc------cc--cCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-cee
Confidence 345666666 55 66666666666666666666 566666666666666666666 55556666655543 333
Q ss_pred e--ecc--cccccCCccccccccccccccc-chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeee
Q 045150 592 L--IGK--LIGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNL 666 (841)
Q Consensus 592 L--~~~--~~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~ 666 (841)
| .++ ...+.+++.+..|..|+.+.|. ...+..++.+.+|+.|.+..|. ...++ ..+. .-.|..|++++
T Consensus 148 li~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-----l~~lp-~El~-~LpLi~lDfSc 220 (722)
T KOG0532|consen 148 LIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-----LEDLP-EELC-SLPLIRLDFSC 220 (722)
T ss_pred EEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-----hhhCC-HHHh-CCceeeeeccc
Confidence 3 111 1233345555666666667666 6667777777778777777665 33333 4444 23566777776
Q ss_pred cCCCccCCCCCcccccCCCCCCCcccceeEeccccCCCC
Q 045150 667 SDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTTLP 705 (841)
Q Consensus 667 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~p 705 (841)
|++.. +| -.+..+.+|+.|-|.+|....|
T Consensus 221 Nkis~-iP---------v~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 221 NKISY-LP---------VDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred Cceee-cc---------hhhhhhhhheeeeeccCCCCCC
Confidence 64322 11 1134445566666666554433
No 49
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=3.2e-07 Score=92.41 Aligned_cols=95 Identities=16% Similarity=0.070 Sum_probs=61.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCc--cCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQD--YQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCL 269 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 269 (841)
..++|+|.+|+|||||++.+|++.... +|+.++|+.+++. +++.++++.+...+-......+...............
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 478999999999999999999964333 8999999998777 7899999988333222111100000000011222223
Q ss_pred HHHc-cCceEEEEEecCCC
Q 045150 270 YKSL-QGKTYLMVLDDVWR 287 (841)
Q Consensus 270 ~~~L-~~kr~LlVlDdv~~ 287 (841)
.... .+++.++++|++..
T Consensus 96 ~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 96 KRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHCCCCEEEEEECHHH
Confidence 3222 58999999999953
No 50
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.42 E-value=7.4e-07 Score=81.48 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=78.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCC-----CCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNK-----FECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDL 265 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 265 (841)
-+++.|+|.+|+|||++++.+.++ .... -..++|+.+....+...+...|+.+++..... ..+..++
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~l 75 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------RQTSDEL 75 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS------TS-HHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc------cCCHHHH
Confidence 468999999999999999999984 2211 34577999988889999999999999875432 2345777
Q ss_pred HHHHHHHccC-ceEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEecc
Q 045150 266 ERCLYKSLQG-KTYLMVLDDVWRK---VDWENLRRAFPDNKNGSRVIITTRN 313 (841)
Q Consensus 266 ~~~l~~~L~~-kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~ilvTtR~ 313 (841)
.+.+.+.+.. +..+||+|+++.. ..++.+..... ..+.+||+..+.
T Consensus 76 ~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 76 RSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7888888854 4469999999654 23444544443 556677777654
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.42 E-value=2.4e-07 Score=102.45 Aligned_cols=60 Identities=32% Similarity=0.300 Sum_probs=33.4
Q ss_pred CCcccceeEeccccCC-CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCC
Q 045150 688 HCQRLVDLRLTGRMTT-LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDS 750 (841)
Q Consensus 688 ~~~~L~~L~L~~~~~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~ 750 (841)
...++..+.+.++... ++..+..+ ++|+.|++++|.++.... ++.+.+|+.|++++|.+.
T Consensus 230 ~~~~l~~l~l~~n~~~~~~~~~~~l-~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 230 NLKNLSGLELSNNKLEDLPESIGNL-SNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hcccccccccCCceeeeccchhccc-cccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 3344444444444322 24455554 667777777776653322 667777777777766544
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.2e-08 Score=99.75 Aligned_cols=180 Identities=23% Similarity=0.175 Sum_probs=123.9
Q ss_pred cccccccccccc---chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCccccc
Q 045150 606 TNLQTLKYVRCK---SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFAS 682 (841)
Q Consensus 606 ~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 682 (841)
+.||.|++++.. ......+..+.+|+.|++.+++.. .+.. ..+.+-.+|+.|+|+.|.+.. ....
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld----D~I~-~~iAkN~~L~~lnlsm~sG~t-------~n~~ 252 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD----DPIV-NTIAKNSNLVRLNLSMCSGFT-------ENAL 252 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC----cHHH-HHHhccccceeeccccccccc-------hhHH
Confidence 458888888776 445566888999999999988743 2333 677888999999999985322 1111
Q ss_pred CCCCCCCcccceeEeccccCCCCc---cccccCCCccEEEEEecc--CCCCChhhh-hhcccCCeEEEecccCCCCCccc
Q 045150 683 LQPLSHCQRLVDLRLTGRMTTLPK---DMHVLLPNLECLSLKVVL--PEENPMPAL-EMLSNLTILDLNFYRDSGDPYHE 756 (841)
Q Consensus 683 l~~l~~~~~L~~L~L~~~~~~~p~---~~~~l~~~L~~L~L~~~~--l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~ 756 (841)
--.+.+|+.|..|+|+.+...-|. .+...-++|+.|+|+++. +.......+ ..+|+|.+|||+.|. ....
T Consensus 253 ~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v----~l~~ 328 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV----MLKN 328 (419)
T ss_pred HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc----ccCc
Confidence 122678999999999987543222 222234889999999983 322333343 579999999999862 2211
Q ss_pred cceEEcCCCcccccceeccccccCce-EEEEccCccccccccccccccC
Q 045150 757 KKLSCRAEGFPLLEILLLDAVEVGIV-EWQVEERAMPMLRGLKIPSDIP 804 (841)
Q Consensus 757 ~~~~~~~~~f~~L~~L~l~~~~~~l~-~~~~~~~~~p~L~~L~l~~~c~ 804 (841)
......-.|+.|++|.++.|. .+. +.-.+...+|+|.+|++. +|-
T Consensus 329 -~~~~~~~kf~~L~~lSlsRCY-~i~p~~~~~l~s~psl~yLdv~-g~v 374 (419)
T KOG2120|consen 329 -DCFQEFFKFNYLQHLSLSRCY-DIIPETLLELNSKPSLVYLDVF-GCV 374 (419)
T ss_pred -hHHHHHHhcchheeeehhhhc-CCChHHeeeeccCcceEEEEec-ccc
Confidence 111123469999999999998 443 233456789999999999 763
No 53
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.38 E-value=3.2e-08 Score=105.15 Aligned_cols=149 Identities=20% Similarity=0.244 Sum_probs=79.4
Q ss_pred HHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCcc
Q 045150 504 PLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPE 582 (841)
Q Consensus 504 ~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~ 582 (841)
.-+..|-.|..|.|..|. +. .+|..+++|..|.||+|+.| .+..+|..++.|+ |+.|-++ +++..+|.+
T Consensus 92 ~~~~~f~~Le~liLy~n~------~r--~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ 161 (722)
T KOG0532|consen 92 EEACAFVSLESLILYHNC------IR--TIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEE 161 (722)
T ss_pred hHHHHHHHHHHHHHHhcc------ce--ecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCccccCCcc
Confidence 334444555555555555 44 55555666666666666665 5555555555543 5555555 455556665
Q ss_pred ccccccccceec---cc-ccccCCccccccccccccccc-chhccccccccCCCceEEeccCCCCcCcccccHHHHhccC
Q 045150 583 TDMMRELRHLIG---KL-IGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLK 657 (841)
Q Consensus 583 ~~~L~~L~~L~~---~~-~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~ 657 (841)
++.+..|.+|+. .. +.+..++.+.+|+.|++..+. ...+.++..| .|.+|++++|... .++ ..+.+|.
T Consensus 162 ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis-----~iP-v~fr~m~ 234 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKIS-----YLP-VDFRKMR 234 (722)
T ss_pred cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCcee-----ecc-hhhhhhh
Confidence 555555555522 11 222235555666666555555 4455555533 3555666655422 222 4555666
Q ss_pred CcceEEeeecCC
Q 045150 658 NLQFLSVNLSDG 669 (841)
Q Consensus 658 ~L~~L~l~~~~~ 669 (841)
+|+.|-|.+|.+
T Consensus 235 ~Lq~l~LenNPL 246 (722)
T KOG0532|consen 235 HLQVLQLENNPL 246 (722)
T ss_pred hheeeeeccCCC
Confidence 666666666544
No 54
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.37 E-value=6.7e-07 Score=87.38 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=42.2
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCc-----cCHHHHHHHH
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQD-----YQFQYLLLRI 242 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i 242 (841)
.||||+++.+++...|........+++.|+|.+|+|||+|++.++.. +.......+.+.+... .....+++++
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR--LAERGGYVISINCDDSERNPYSPFRSALRQL 78 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH--HHHHT--EEEEEEETTTS-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCEEEEEEEeccccchhhHHHHHHHHH
Confidence 47999999999999995333335689999999999999999999984 4433222333333332 1125555555
Q ss_pred HHHhh
Q 045150 243 IKSFN 247 (841)
Q Consensus 243 ~~~l~ 247 (841)
+.++.
T Consensus 79 ~~~~~ 83 (185)
T PF13191_consen 79 IDQLL 83 (185)
T ss_dssp S----
T ss_pred HHHhh
Confidence 55543
No 55
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=8.8e-06 Score=88.03 Aligned_cols=195 Identities=13% Similarity=0.175 Sum_probs=108.3
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
++++|-+..++.+...+..+. -...+.++|+.|+||||+|+.+.+.-.-...+. ...+.....-+++....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~--~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~ 86 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR--IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGL 86 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC--CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCC
Confidence 468999999998888887654 345788999999999999999987311111110 00000000000110000
Q ss_pred hhccccccCCCCCCCHHHHHHHHHHHc-----cCceEEEEEecCCChh--hHHHHHhhCCCCCCCcEEEEEecc-hHHhh
Q 045150 247 NIISSAEEGGLENKSEEDLERCLYKSL-----QGKTYLMVLDDVWRKV--DWENLRRAFPDNKNGSRVIITTRN-REVAE 318 (841)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~ 318 (841)
...... .........++... +.+.+ .+++-++|+|+++... .++.+...+.......++|++|.+ ..+..
T Consensus 87 ~~d~~~-~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 87 CLDLIE-IDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CCceEE-ecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 000000 00000011122211 11111 2456699999998653 567777777665556667766654 33333
Q ss_pred cCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHH
Q 045150 319 RSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 319 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 374 (841)
........+++.+++.++..+.+...+-.... .-..+.+..|++.++|.|..+.
T Consensus 165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 165 TILSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 22222378999999999998888776533221 1223556778899999886543
No 56
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.35 E-value=3.5e-07 Score=95.63 Aligned_cols=95 Identities=16% Similarity=0.068 Sum_probs=59.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCcc--CHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDY--QFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCL 269 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 269 (841)
+-..|+|++|+||||||++||++.... +|+.++||.+++.. .+.++++.|...+-......+............+..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 357899999999999999999964333 89999999999887 677777777632211111100000000001111122
Q ss_pred HHH-ccCceEEEEEecCCC
Q 045150 270 YKS-LQGKTYLMVLDDVWR 287 (841)
Q Consensus 270 ~~~-L~~kr~LlVlDdv~~ 287 (841)
... -.+++++|++|++..
T Consensus 249 e~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHcCCCEEEEEEChHH
Confidence 222 268999999999954
No 57
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.34 E-value=4.2e-06 Score=84.65 Aligned_cols=164 Identities=16% Similarity=0.188 Sum_probs=95.2
Q ss_pred ChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhcccccc
Q 045150 175 DTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEE 254 (841)
Q Consensus 175 ~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 254 (841)
.++.+..++... ....+.|+|..|+|||+||+.+++. ........++++++.-.+ ..
T Consensus 25 ~~~~l~~~~~~~---~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~------------ 81 (226)
T TIGR03420 25 LLAALRQLAAGK---GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD------------ 81 (226)
T ss_pred HHHHHHHHHhcC---CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH------------
Confidence 455666654322 3467899999999999999999984 333334456666433110 00
Q ss_pred CCCCCCCHHHHHHHHHHHccCceEEEEEecCCChh---hHH-HHHhhCCC-CCCCcEEEEEecchH---------HhhcC
Q 045150 255 GGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV---DWE-NLRRAFPD-NKNGSRVIITTRNRE---------VAERS 320 (841)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~ 320 (841)
..+.+.+++. -+||+||++... .|. .+...+.. ...+.++|+||+... +...+
T Consensus 82 ------------~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 ------------PEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred ------------HHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 0111122222 389999997543 332 34333322 123447888887532 12122
Q ss_pred CCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHh
Q 045150 321 DEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLG 377 (841)
Q Consensus 321 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 377 (841)
.. ...+++.++++++...++...+-.... .--.+..+.+++.+.|.|..+..+.
T Consensus 149 ~~-~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 149 AW-GLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred hc-CeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 11 257899999999999988775432221 1223455777778888888776543
No 58
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.34 E-value=9.9e-06 Score=92.00 Aligned_cols=203 Identities=12% Similarity=0.087 Sum_probs=117.9
Q ss_pred CCCCCcccCCChHHHHHHHhcC--CCCCeEEEEEEccCCCcHHHHHHHHhcCcc--c-cCCCC--cEEEEEeCCccCHHH
Q 045150 165 VEENPVGFEDDTDVLLSKLLAG--DEPRRLVISIYGMGGLGKTTLAKKLYHSSD--V-KNKFE--CCAWVSVSQDYQFQY 237 (841)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~-~~~F~--~~~wv~vs~~~~~~~ 237 (841)
.++.+.||+++.++|...|... ......++.|+|++|.|||+.++.|.+.-. . +.... .+++|.+..-.+...
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 3568999999999999888642 111235788999999999999999987411 1 12222 267787777778889
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHc-c--CceEEEEEecCCChh-----hHHHHHhhCCCCCCCcEEEE
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSL-Q--GKTYLMVLDDVWRKV-----DWENLRRAFPDNKNGSRVII 309 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L-~--~kr~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~ilv 309 (841)
++..|.+++...... ......+....+.+.+ . ....+||||+++... .+..+... +. ..+++|++
T Consensus 833 IYqvI~qqL~g~~P~-----~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~~-~s~SKLiL 905 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPP-----NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-PT-KINSKLVL 905 (1164)
T ss_pred HHHHHHHHHcCCCCC-----ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-hh-ccCCeEEE
Confidence 999999998543211 1122234445555554 2 234599999997432 12222221 11 23555544
Q ss_pred --Eecch--------HHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCC--CCchhHHHHHHHHHHcCCCchHHHHH
Q 045150 310 --TTRNR--------EVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTN--REKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 310 --TtR~~--------~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~--~~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
+|... .+...+.. ..+...|.+.++..+++..++-.... .+..++-+|+.++..-|..-.|+.++
T Consensus 906 IGISNdlDLperLdPRLRSRLg~--eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDIL 982 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLAF--GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQIC 982 (1164)
T ss_pred EEecCchhcchhhhhhhhhcccc--ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 33221 12222221 34667999999999999888753211 12333334444443334444444443
No 59
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.32 E-value=4.9e-06 Score=77.71 Aligned_cols=123 Identities=18% Similarity=0.113 Sum_probs=70.5
Q ss_pred cccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhc
Q 045150 170 VGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNII 249 (841)
Q Consensus 170 vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 249 (841)
+|++..++.+...+.... .+.+.|+|.+|+||||+|+.+++. ....-..++++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~---~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP---PKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF---- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC---CCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh----
Confidence 367777788877776532 357889999999999999999984 32222446677655433222111110000
Q ss_pred cccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--h---hHHHHHhhCCCC---CCCcEEEEEecchH
Q 045150 250 SSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--V---DWENLRRAFPDN---KNGSRVIITTRNRE 315 (841)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~---~~~~l~~~l~~~---~~gs~ilvTtR~~~ 315 (841)
............++.++|+||++.. . .+..+...+... ..+..||+||....
T Consensus 72 --------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111223456789999999853 2 222323333221 35678888887544
No 60
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=8.8e-06 Score=93.88 Aligned_cols=182 Identities=14% Similarity=0.133 Sum_probs=109.6
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCC-------------------CCcEEEE
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNK-------------------FECCAWV 227 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv 227 (841)
.++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+++.-.-... |..++++
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r--l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR--LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC--CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 468999999999988887654 2356689999999999999999974111111 1111222
Q ss_pred EeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHH-HHccCceEEEEEecCCCh--hhHHHHHhhCCCCCCC
Q 045150 228 SVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLY-KSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNG 304 (841)
Q Consensus 228 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~-~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~g 304 (841)
..+....+.. ++.|+. .+. ....+++-++|||+++.. ...+.+...+-.....
T Consensus 94 dAas~~kVDd-IReLie-----------------------~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~ 149 (944)
T PRK14949 94 DAASRTKVDD-TRELLD-----------------------NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEH 149 (944)
T ss_pred ccccccCHHH-HHHHHH-----------------------HHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCC
Confidence 1111111111 122221 111 112467789999999754 5667777766654455
Q ss_pred cEEEEEec-chHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHH
Q 045150 305 SRVIITTR-NREVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 305 s~ilvTtR-~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
.++|++|. ...+..........|.+++++.++..+.+.+.+-... ..--.+....|++.++|.|.-+..+
T Consensus 150 vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 150 VKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred eEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 66665544 4444332222237899999999999988887653321 1122355677889999988644433
No 61
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=9.8e-06 Score=91.62 Aligned_cols=197 Identities=13% Similarity=0.107 Sum_probs=111.1
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
+++||.+..++.|..++..+. -...+.++|..|+||||+|+.+.+.-.-...++ +..+......+.|...-
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR--L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR--LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGR 86 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCC
Confidence 368999999999999887654 235667999999999999998877311111110 00111111111111000
Q ss_pred hhccccccCCCCCCCHHHHHHHHHHH----ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchH-Hhhc
Q 045150 247 NIISSAEEGGLENKSEEDLERCLYKS----LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNRE-VAER 319 (841)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~ 319 (841)
.....+ -....+...+++.+.+... ..++.-++|||+++.. ..++.+...+-......++|+||.+.. +...
T Consensus 87 h~DviE-IDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 87 FVDYVE-MDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165 (830)
T ss_pred CceEEE-ecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccch
Confidence 000000 0000011122222222221 1345568999999865 457777776655555677777776643 4333
Q ss_pred CCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCch-HHHH
Q 045150 320 SDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPL-AIVV 375 (841)
Q Consensus 320 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~ 375 (841)
.......+.+++++.++..+.+.+.+-.... .-..+..+.|++.++|... ++..
T Consensus 166 IrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 166 VLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3333378999999999999988876633222 1224556788999988664 4443
No 62
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.28 E-value=1.1e-05 Score=87.22 Aligned_cols=197 Identities=15% Similarity=0.102 Sum_probs=107.2
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCcccc-CCCC-cEEEEEeCCccCH-HHHHH---
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVK-NKFE-CCAWVSVSQDYQF-QYLLL--- 240 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~-~~~wv~vs~~~~~-~~~~~--- 240 (841)
++++|++..++.+..++..+. ...+.++|+.|+||||+|+.+.+. .. ..+. ..+.++++.-.+. ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~---~~~lll~Gp~GtGKT~la~~~~~~--l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN---LPHLLVQGPPGSGKTAAVRALARE--LYGDPWENNFTEFNVADFFDQGKKYLVEDP 89 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC---CceEEEECCCCCCHHHHHHHHHHH--hcCcccccceEEechhhhhhcchhhhhcCc
Confidence 468899999999888887543 345789999999999999999873 32 2222 2344444321100 00000
Q ss_pred HHHHHhhhccccccCCCCCCCHHHHHHHHHHH---c--cCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc
Q 045150 241 RIIKSFNIISSAEEGGLENKSEEDLERCLYKS---L--QGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRN 313 (841)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~---L--~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~ 313 (841)
.....++... .......+.....++.. . .+.+-+||+||+... .....+...+......+++|+||..
T Consensus 90 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 164 (337)
T PRK12402 90 RFAHFLGTDK-----RIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQ 164 (337)
T ss_pred chhhhhhhhh-----hhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 0000000000 00000011222222221 1 234558999999754 2344455555444445678777754
Q ss_pred h-HHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHH
Q 045150 314 R-EVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 314 ~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 375 (841)
. .+..........+++.+++.++...++...+-..... --.+....+++.++|.+-.+..
T Consensus 165 ~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 165 PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 3 2222222223678899999999988888766433221 2245667788888887665443
No 63
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=1.8e-05 Score=88.02 Aligned_cols=197 Identities=17% Similarity=0.109 Sum_probs=111.0
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCc-EEEEEeCCccCHHHHHHHHHHHh
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFEC-CAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
+++|-+..+..+...+..+. -...+.++|+.|+||||+|+.+++.-.-...... -.+..+..+ ..-..+....
T Consensus 22 dliGq~~vv~~L~~ai~~~r--i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~~~~ 95 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDR--LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFNNHN 95 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHhcCC
Confidence 57898888888877776553 2357889999999999999999873111111000 000000000 0000110000
Q ss_pred hhccccccCCCCCCCHHHHHHHHHHH----ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEE-EecchHHhhc
Q 045150 247 NIISSAEEGGLENKSEEDLERCLYKS----LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVII-TTRNREVAER 319 (841)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~ 319 (841)
.....+ -........+++...+... +.+++-++|+|+++.. ..++.+...+......+.+|+ ||+...+...
T Consensus 96 h~Dv~e-idaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIE-IDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEE-eeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 000000 0000111223333322221 2467779999999864 568888877776555666554 5555555443
Q ss_pred CCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHH
Q 045150 320 SDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 320 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 373 (841)
.......+++.+++.++....+...+-..... --.+....|++.++|.+.-+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 33333789999999999999998877433221 12345567888999987544
No 64
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.8e-05 Score=88.48 Aligned_cols=177 Identities=14% Similarity=0.118 Sum_probs=106.9
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCcc----c---------------cCCCCcEEEE
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSD----V---------------KNKFECCAWV 227 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~----~---------------~~~F~~~~wv 227 (841)
.+++|-+..++.+...+..+. -...+.++|+.|+||||+|+.+++.-. . .+.|...+++
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r--l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK--VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 368899999988988887653 345678999999999999999986210 0 0112223333
Q ss_pred EeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHH-ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCC
Q 045150 228 SVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKS-LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNG 304 (841)
Q Consensus 228 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~g 304 (841)
.........+ . .++.+.+... ..+++-++|+|+++.. ..++.+...+......
T Consensus 94 daas~~gvd~-i-----------------------r~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 94 DAASRTGVEE-T-----------------------KEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred ecccccCHHH-H-----------------------HHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 2211111111 1 1122222111 2456779999999754 4577777777765556
Q ss_pred cEEEE-EecchHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCch
Q 045150 305 SRVII-TTRNREVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPL 371 (841)
Q Consensus 305 s~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 371 (841)
+.+|+ ||....+..........+++++++.++....+...+-... -.--.+....|++.++|.+.
T Consensus 150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 66554 5544444433233337899999999998877776543222 12223455678889998664
No 65
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.1e-05 Score=90.01 Aligned_cols=200 Identities=15% Similarity=0.090 Sum_probs=110.8
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccC---CCCcEEEEEeCCccCHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKN---KFECCAWVSVSQDYQFQYLLLRII 243 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~~~~~i~ 243 (841)
.++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.-.-.. ... +. +..+.....-+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR--LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g----~~-~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR--LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG----IT-AQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC--CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc----CC-CCCCcccHHHHHHH
Confidence 368999999999999887664 235678999999999999999976311100 000 00 00000000111110
Q ss_pred HHhhhccccccCCCCCCCHHHHHHHHHHH----ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEE-EEecchHH
Q 045150 244 KSFNIISSAEEGGLENKSEEDLERCLYKS----LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVI-ITTRNREV 316 (841)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il-vTtR~~~v 316 (841)
..-...... .....+...+++.+.+... ..++.-++|+|+++.. ..++.+...+-.-..+.++| +||....+
T Consensus 89 aG~hpDviE-IdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 89 AGRFVDYIE-MDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred cCCCCcceE-ecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 000000000 0000011223333333222 1456679999999854 46677777665544455555 55555555
Q ss_pred hhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHH
Q 045150 317 AERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
..........+.++.++.++..+.+.+.+-.... ....+..+.|++.++|.|.-+..+
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi--~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI--AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4433333378999999999999888776532221 112345578899999999755443
No 66
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.8e-05 Score=88.63 Aligned_cols=196 Identities=16% Similarity=0.115 Sum_probs=109.9
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
.++||.+...+.|..++..+. -...+.++|+.|+||||+|+.+.+. +-.. -|+.. ..+.....-+.|...-
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr--l~HAyLF~GPpGvGKTTlAriLAK~--LnC~----~~~~~-~pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR--LHHAYLFTGTRGVGKTTIARILAKC--LNCE----TGVTS-TPCEVCATCKAVNEGR 85 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHH--hCCC----cCCCC-CCCccCHHHHHHhcCC
Confidence 468999999999999988664 2467899999999999999998873 1100 01110 0001001111110000
Q ss_pred hhccccccCCCCCCCHHHHHHHHHHH----ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-HHhhc
Q 045150 247 NIISSAEEGGLENKSEEDLERCLYKS----LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNR-EVAER 319 (841)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~ 319 (841)
...... -........++..+.+... ..+++-++|+|+++.. ...+.+...+.....+.++|++|.+. .+...
T Consensus 86 hpDviE-IDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 86 FIDLIE-IDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred CCceEE-ecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHH
Confidence 000000 0000011122222222211 2356679999999854 45666776666555566777777653 23222
Q ss_pred CCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHH
Q 045150 320 SDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 320 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 374 (841)
.......+++++++.++..+.+.+.+-.... .--.+....|++.++|.+..+.
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 1122378999999999998888776643222 2223456778889998876554
No 67
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.5e-05 Score=87.35 Aligned_cols=192 Identities=18% Similarity=0.116 Sum_probs=111.1
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFN 247 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 247 (841)
+++|-+...+.|..++..+. -...+.++|++|+||||+|+.+++.-.-.+.+...+|.|.+.. .+.....
T Consensus 15 dvvGq~~v~~~L~~~i~~~~--l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~--------~i~~~~h 84 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGR--LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL--------AVRRGAH 84 (504)
T ss_pred HhcChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH--------HHhcCCC
Confidence 57898888888888877654 2356799999999999999999874221222322333332110 0000000
Q ss_pred hccccccCCCCCCCHHHHHHHHHHH-----ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEec-chHHhhc
Q 045150 248 IISSAEEGGLENKSEEDLERCLYKS-----LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTR-NREVAER 319 (841)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~~~ 319 (841)
..... -........+...+ +.+. ..+++-++|+|+++.. ..++.+...+........+|++|. ...+...
T Consensus 85 ~dv~e-l~~~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 85 PDVLE-IDAASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred CceEE-ecccccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 00000 00000111122221 2222 2356679999999854 457777777765544555555543 4444333
Q ss_pred CCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHH
Q 045150 320 SDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 320 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 373 (841)
.......+++.+++.++....+.+.+-..... --.+....|++.++|.+--+
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 33334789999999999999998876433221 12356678999999988655
No 68
>PTZ00202 tuzin; Provisional
Probab=98.22 E-value=5.1e-05 Score=80.06 Aligned_cols=165 Identities=14% Similarity=0.088 Sum_probs=104.6
Q ss_pred cCCCCCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHH
Q 045150 163 FDVEENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRI 242 (841)
Q Consensus 163 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 242 (841)
+.+...|+||+.+...+...|...+....+++.|.|++|+|||||++.+.... . ..+++.-.. +..++++.|
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l--~----~~qL~vNpr--g~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE--G----MPAVFVDVR--GTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC--C----ceEEEECCC--CHHHHHHHH
Confidence 34567899999999999999976544345699999999999999999999732 2 223333333 679999999
Q ss_pred HHHhhhccccccCCCCCCCHHHHHHHHHHHc-----c-CceEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEecc
Q 045150 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSL-----Q-GKTYLMVLDDVWRK---VDWENLRRAFPDNKNGSRVIITTRN 313 (841)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~ilvTtR~ 313 (841)
+.+|+.+... ...++...|.+.+ . +++.+||+-=-.-. ..+.+. ..+.....-|.|++---.
T Consensus 330 L~ALGV~p~~--------~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpl 400 (550)
T PTZ00202 330 VKALGVPNVE--------ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPL 400 (550)
T ss_pred HHHcCCCCcc--------cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehH
Confidence 9999973211 1134444444433 3 77888887532211 112221 123333344667766554
Q ss_pred hHHhhc--CCCcceeEecCCCChhHHHHHHHhH
Q 045150 314 REVAER--SDEKTYVHKLRFLRGDESWLLFCEK 344 (841)
Q Consensus 314 ~~v~~~--~~~~~~~~~l~~L~~~~~~~lf~~~ 344 (841)
+.+... .-+.-..|.+++++.++|..+-.+.
T Consensus 401 eslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 401 ESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 443222 1122268889999999998876553
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.20 E-value=8.2e-07 Score=98.24 Aligned_cols=169 Identities=27% Similarity=0.336 Sum_probs=103.5
Q ss_pred ccCceeeEEEeecCCcccccccccccchhhccccC-cceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCcccc
Q 045150 507 KRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLI-HLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETD 584 (841)
Q Consensus 507 ~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~ 584 (841)
..+..+..|++.++. +. .+|...+.+. +|++|++++| .+..+|..++.+++|+.|+++ +.+..+|....
T Consensus 113 ~~~~~l~~L~l~~n~------i~--~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~ 183 (394)
T COG4886 113 LELTNLTSLDLDNNN------IT--DIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS 183 (394)
T ss_pred hcccceeEEecCCcc------cc--cCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhh
Confidence 344566777777766 65 5666666663 6777777776 666666666677777777777 66666666655
Q ss_pred ccccccceeccc---ccccC-Cccccccccccccccc-chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCc
Q 045150 585 MMRELRHLIGKL---IGTLP-IENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNL 659 (841)
Q Consensus 585 ~L~~L~~L~~~~---~~~~~-i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L 659 (841)
.+++|+.|.... ..... ++.+..|++|.+.++. ...+..+.++.++..|.+..+... .+. ..+..+++|
T Consensus 184 ~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-----~~~-~~~~~l~~l 257 (394)
T COG4886 184 NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-----DLP-ESIGNLSNL 257 (394)
T ss_pred hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-----ecc-chhcccccc
Confidence 666666663311 11111 2345557777777774 556666777777777776555422 112 566677778
Q ss_pred ceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecccc
Q 045150 660 QFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM 701 (841)
Q Consensus 660 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~ 701 (841)
+.|++++|.++ .+..+....+|+.|+++++.
T Consensus 258 ~~L~~s~n~i~-----------~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 258 ETLDLSNNQIS-----------SISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ceecccccccc-----------ccccccccCccCEEeccCcc
Confidence 88888877432 22225556677788887754
No 70
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.19 E-value=5e-05 Score=74.14 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=62.6
Q ss_pred CceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-HHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCC
Q 045150 275 GKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNR-EVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNR 351 (841)
Q Consensus 275 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 351 (841)
+.+-++|+|+++.. ...+.+...+......+.+|++|++. .+..........+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C-
Confidence 56678999999754 45777877777655566677766543 332222222378999999999998888776 1 1
Q ss_pred CchhHHHHHHHHHHcCCCchH
Q 045150 352 EKGLEKLGREMVEKCDGLPLA 372 (841)
Q Consensus 352 ~~~~~~~~~~i~~~c~glPla 372 (841)
..+.+..|++.++|.|..
T Consensus 170 ---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 ---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred ---CHHHHHHHHHHcCCCccc
Confidence 135678899999998853
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.19 E-value=2.2e-07 Score=102.91 Aligned_cols=218 Identities=26% Similarity=0.253 Sum_probs=94.1
Q ss_pred hccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceec---ccccccCCccccccccc
Q 045150 536 KLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIG---KLIGTLPIENLTNLQTL 611 (841)
Q Consensus 536 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~---~~~~~~~i~~l~~L~~L 611 (841)
.++.+.+|.+|++.+| .+..+...+..+.+|++|+++ +.+..+.. +..++.|+.|+. .......+..+++|+.+
T Consensus 90 ~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISGLESLKSLKLL 167 (414)
T ss_pred ccccccceeeeecccc-chhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhccCCccchhhhcc
Confidence 3555566666666666 455554445556666666666 33333221 222222222211 11111123334555555
Q ss_pred ccccccchhccc--cccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCC
Q 045150 612 KYVRCKSWIRVN--TAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHC 689 (841)
Q Consensus 612 ~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~ 689 (841)
++.++....... +..+.+|+.+.+.+|..... ..+..+..+..+++..|.+. .+..+...
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-------~~~~~~~~l~~~~l~~n~i~-----------~~~~l~~~ 229 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGNSIREI-------EGLDLLKKLVLLSLLDNKIS-----------KLEGLNEL 229 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCCchhcc-------cchHHHHHHHHhhcccccce-----------eccCcccc
Confidence 555555222222 35555555555555542211 22222333333344443211 12222222
Q ss_pred cc--cceeEeccccCC-CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCc
Q 045150 690 QR--LVDLRLTGRMTT-LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGF 766 (841)
Q Consensus 690 ~~--L~~L~L~~~~~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f 766 (841)
+. |+.+++.++... .+..+..+ .++..|++.++++.. ...+...+.+..+....|.+........ .......
T Consensus 230 ~~~~L~~l~l~~n~i~~~~~~~~~~-~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 304 (414)
T KOG0531|consen 230 VMLHLRELYLSGNRISRSPEGLENL-KNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQ--EYITSAA 304 (414)
T ss_pred hhHHHHHHhcccCcccccccccccc-ccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhc--ccccccc
Confidence 22 666666665433 32334343 666666666665532 2233444555555555543332110000 0012345
Q ss_pred ccccceeccccc
Q 045150 767 PLLEILLLDAVE 778 (841)
Q Consensus 767 ~~L~~L~l~~~~ 778 (841)
+.++...+..++
T Consensus 305 ~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 305 PTLVTLTLELNP 316 (414)
T ss_pred ccccccccccCc
Confidence 566666666555
No 72
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.17 E-value=1.1e-05 Score=95.99 Aligned_cols=211 Identities=15% Similarity=0.125 Sum_probs=121.3
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeC---Cc---cCHHHHHHH
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVS---QD---YQFQYLLLR 241 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs---~~---~~~~~~~~~ 241 (841)
.++||+.+.+.|...+.........++.+.|..|||||+|+++|.. .+.+.+...+--.+. .. ....+.+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 3789999999999998865444567999999999999999999998 444332221111111 11 112345555
Q ss_pred HHHHhhhccccc---------------------------------cC--CCCCCCHHH-----HHHHHHHHc-cCceEEE
Q 045150 242 IIKSFNIISSAE---------------------------------EG--GLENKSEED-----LERCLYKSL-QGKTYLM 280 (841)
Q Consensus 242 i~~~l~~~~~~~---------------------------------~~--~~~~~~~~~-----~~~~l~~~L-~~kr~Ll 280 (841)
++.++....... ++ .+.....+. .+..+.... +.++..+
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 555552111000 00 000111111 122223333 4669999
Q ss_pred EEecC-CChhh-HHHHHhhCCCCCC----CcEE--EEEecch-HHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCC
Q 045150 281 VLDDV-WRKVD-WENLRRAFPDNKN----GSRV--IITTRNR-EVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNR 351 (841)
Q Consensus 281 VlDdv-~~~~~-~~~l~~~l~~~~~----gs~i--lvTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 351 (841)
|+||+ |-+.. .+-+...+..... ...| +.|.+.. ............+.+.||+..+...+........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~--- 235 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT--- 235 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc---
Confidence 99999 54432 2222211111110 1122 2333333 1222222333789999999999999988766332
Q ss_pred CchhHHHHHHHHHHcCCCchHHHHHhhhhcCC
Q 045150 352 EKGLEKLGREMVEKCDGLPLAIVVLGGLLSTK 383 (841)
Q Consensus 352 ~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~ 383 (841)
.....+....|+++..|+|+-+.-+-..+...
T Consensus 236 ~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 236 KLLPAPLLELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred ccccchHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence 23345677899999999999999988887764
No 73
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.16 E-value=2.3e-05 Score=90.14 Aligned_cols=205 Identities=17% Similarity=0.114 Sum_probs=118.3
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCC---cEEEEEeCC---ccCHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFE---CCAWVSVSQ---DYQFQYLLL 240 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~---~~~~~~~~~ 240 (841)
++++|.+..+..+...+... ....+.|+|++|+||||+|+.+++.......+. ..-|+.+.. ..+...+..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~---~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP---FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC---CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 36899999888888776533 335799999999999999999987533333331 234554432 112222211
Q ss_pred HH---------------HHHhhhcccc------c------cCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhH
Q 045150 241 RI---------------IKSFNIISSA------E------EGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDW 291 (841)
Q Consensus 241 ~i---------------~~~l~~~~~~------~------~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~ 291 (841)
.+ +...+..... . -+++..++ ...+..+.+.++++++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccc
Confidence 11 1111110000 0 01122232 45678889999999999998877754 468
Q ss_pred HHHHhhCCCCCCCcEEEE--EecchH-HhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCC
Q 045150 292 ENLRRAFPDNKNGSRVII--TTRNRE-VAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDG 368 (841)
Q Consensus 292 ~~l~~~l~~~~~gs~ilv--TtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~g 368 (841)
+.+...+....+...|++ ||++.. +..........+.+.+++.++.+.++.+.+-..... --.++.+.|.+.+..
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~--ls~eal~~L~~ys~~ 387 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH--LAAGVEELIARYTIE 387 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHCCCc
Confidence 888877776665555555 566433 111111122567889999999999999876432111 112344445554443
Q ss_pred CchHHHHHh
Q 045150 369 LPLAIVVLG 377 (841)
Q Consensus 369 lPlai~~~~ 377 (841)
-+.++..++
T Consensus 388 gRraln~L~ 396 (615)
T TIGR02903 388 GRKAVNILA 396 (615)
T ss_pred HHHHHHHHH
Confidence 355555444
No 74
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=4.2e-05 Score=84.76 Aligned_cols=185 Identities=16% Similarity=0.159 Sum_probs=104.2
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccC-------------------CCCcEEEE
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKN-------------------KFECCAWV 227 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv 227 (841)
+++||.+.....+...+..+. -...+.++|++|+||||+|+.+.+.-.-.. .+..+..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~--l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS--ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 358998877777777666553 235688999999999999999987311100 01112222
Q ss_pred EeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCc
Q 045150 228 SVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGS 305 (841)
Q Consensus 228 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 305 (841)
..+.......+ +.|...+.. .-..+++-++|+|+++.. ...+.+...+.......
T Consensus 92 ~aa~~~gid~i-R~i~~~~~~----------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~v 148 (472)
T PRK14962 92 DAASNRGIDEI-RKIRDAVGY----------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHV 148 (472)
T ss_pred eCcccCCHHHH-HHHHHHHhh----------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcE
Confidence 22111111111 111111100 012356679999999754 34556666665444344
Q ss_pred EEEE-EecchHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCC-chHHHHHhh
Q 045150 306 RVII-TTRNREVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGL-PLAIVVLGG 378 (841)
Q Consensus 306 ~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~~ 378 (841)
.+|+ ||....+..........+++.+++.++....+...+...... --.+....|++.++|- +.++..+-.
T Consensus 149 v~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~--i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 149 VFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE--IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4444 443344444333334789999999999888888776432221 2234566788877654 555555543
No 75
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=8e-05 Score=79.86 Aligned_cols=198 Identities=13% Similarity=0.065 Sum_probs=110.0
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEE------EEEeCCccCHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCA------WVSVSQDYQFQYLLL 240 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~------wv~vs~~~~~~~~~~ 240 (841)
.+++|-+..++.+.+.+..+. -...+.++|+.|+||+|+|..+.+.---........ =+.+...+. .-+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r--l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~---~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR--LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP---VAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh---HHH
Confidence 468999888888988888764 245788999999999999988876310000000000 000000000 111
Q ss_pred HHHHHhhhcc-------ccccCC-CCCCCHHHHHHHHHHHc-----cCceEEEEEecCCCh--hhHHHHHhhCCCCCCCc
Q 045150 241 RIIKSFNIIS-------SAEEGG-LENKSEEDLERCLYKSL-----QGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGS 305 (841)
Q Consensus 241 ~i~~~l~~~~-------~~~~~~-~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 305 (841)
.|...--.+. .+.... -.....+++. .+.+.+ .+.+.++|+||++.. .....+...+.....++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 1110000000 000000 0112234432 333333 356779999999754 45566666665544556
Q ss_pred EEEEEecch-HHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHH
Q 045150 306 RVIITTRNR-EVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 306 ~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
.+|++|... .+..........+.+.+++.++..+++...... . ..+....++..++|.|+.+..+
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~----~--~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD----L--PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----C--CHHHHHHHHHHcCCCHHHHHHH
Confidence 666666654 343333333478999999999999999875411 1 1122267899999999866554
No 76
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=4e-05 Score=84.50 Aligned_cols=181 Identities=13% Similarity=0.150 Sum_probs=110.3
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC------cc------------c-cCCCCcEEEE
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS------SD------------V-KNKFECCAWV 227 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~------~~------------~-~~~F~~~~wv 227 (841)
.++||-+..++.+...+..+. -...+.++|+.|+||||+|+.+.+. +. + .+.+.-++.+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r--i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK--IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 368898888888877776554 2357889999999999999988751 00 0 0112223344
Q ss_pred EeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCc
Q 045150 228 SVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGS 305 (841)
Q Consensus 228 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 305 (841)
..+....+.+ .++|+...... -..+++-++|+|+++.. +..+.+...+......+
T Consensus 91 daas~~~vdd-IR~Iie~~~~~----------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v 147 (491)
T PRK14964 91 DAASNTSVDD-IKVILENSCYL----------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHV 147 (491)
T ss_pred ecccCCCHHH-HHHHHHHHHhc----------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCe
Confidence 4332222222 22222221110 01356678999999754 45677777776655667
Q ss_pred EEEEEe-cchHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHH
Q 045150 306 RVIITT-RNREVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 306 ~ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 374 (841)
++|++| ....+..........+++++++.++....+...+-.... .--.+....|++.++|.+..+.
T Consensus 148 ~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 148 KFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred EEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 666555 444444433333378999999999998888877643322 1223456788999998876543
No 77
>PRK08727 hypothetical protein; Validated
Probab=98.12 E-value=2.6e-05 Score=78.68 Aligned_cols=146 Identities=18% Similarity=0.108 Sum_probs=86.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
..+.|+|..|+|||+||+.+++. ...+...+.++++.+ ....+ ...+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~-----------------------~~~~~- 89 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRL-----------------------RDALE- 89 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhH-----------------------HHHHH-
Confidence 46999999999999999999883 333334566776322 11100 01111
Q ss_pred HccCceEEEEEecCCCh---hhHHH-HHhhCCC-CCCCcEEEEEecch---------HHhhcCCCcceeEecCCCChhHH
Q 045150 272 SLQGKTYLMVLDDVWRK---VDWEN-LRRAFPD-NKNGSRVIITTRNR---------EVAERSDEKTYVHKLRFLRGDES 337 (841)
Q Consensus 272 ~L~~kr~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~~l~~L~~~~~ 337 (841)
.+ .+--+||+||+... ..|.. +...+.. ..+|..||+|++.. .+.+..... ..+++++++.++.
T Consensus 90 ~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~-~~~~l~~~~~e~~ 167 (233)
T PRK08727 90 AL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQC-IRIGLPVLDDVAR 167 (233)
T ss_pred HH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC-ceEEecCCCHHHH
Confidence 11 12248999999643 23332 2222111 12356699999842 222222222 5889999999999
Q ss_pred HHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHH
Q 045150 338 WLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 338 ~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 373 (841)
..++.+++.... -.--.+...-|++.+.|-.-.+
T Consensus 168 ~~iL~~~a~~~~--l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 168 AAVLRERAQRRG--LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHHhCCCCHHHH
Confidence 999998775432 1223456677788887665544
No 78
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=4.4e-05 Score=83.12 Aligned_cols=194 Identities=14% Similarity=0.048 Sum_probs=108.7
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccC-CCCcEEEEEeCCccCHHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKN-KFECCAWVSVSQDYQFQYLLLRIIKS 245 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i~~~ 245 (841)
+++||-+..+..|..++..+. -...+.++|+.|+||||+|+.+++. +.. .... ...+..+.+-.. +...
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r--i~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~~--~~pCg~C~sC~~----i~~g 87 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK--IGHAYIFFGPRGVGKTTIARILAKR--LNCENPIG--NEPCNECTSCLE----ITKG 87 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHh--cCcccccC--ccccCCCcHHHH----HHcc
Confidence 358898888888888887654 2346889999999999999999873 211 1000 000111111111 1111
Q ss_pred hhhccccccCCCCCCCHHHH---HHHHHHH-ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEE-EEecchHHhh
Q 045150 246 FNIISSAEEGGLENKSEEDL---ERCLYKS-LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVI-ITTRNREVAE 318 (841)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~~---~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il-vTtR~~~v~~ 318 (841)
.......- ........+.+ .+.+... ..++.-++|+|+++.. ..++.+...+-.......+| .||....+..
T Consensus 88 ~~~dviEI-daas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 88 ISSDVLEI-DAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred CCccceee-chhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 10000000 00001111222 2222211 2456679999999754 56777776665433445544 4555455543
Q ss_pred cCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHH
Q 045150 319 RSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 319 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 373 (841)
........|.+++++.++..+.+.+.+-.... .--.+....|++.++|.+.-+
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHHHH
Confidence 33333367999999999988888776643222 122456678999999998644
No 79
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.11 E-value=0.0001 Score=80.30 Aligned_cols=182 Identities=13% Similarity=0.132 Sum_probs=108.9
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCcc--cc------------------CCCCcEEE
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSD--VK------------------NKFECCAW 226 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~------------------~~F~~~~w 226 (841)
.+++|.+..++.+..++..+. -...+.++|..|+||||+|+.+...-. .. .+++. ++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~--~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~ 90 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR--IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IE 90 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EE
Confidence 368999999999999887654 245788999999999999988876310 00 12222 22
Q ss_pred EEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCCCCC
Q 045150 227 VSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNG 304 (841)
Q Consensus 227 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~g 304 (841)
+..+...+.. -+++++..+... -..+++-++|+|+++.. ...+.+...+......
T Consensus 91 ~~~~~~~~~~-~~~~l~~~~~~~----------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 91 IDAASNNGVD-DIREILDNVKYA----------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred eeccccCCHH-HHHHHHHHHhcC----------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 2221111111 112222221110 01345568999998654 4566777777554556
Q ss_pred cEEEEEecchH-HhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHH
Q 045150 305 SRVIITTRNRE-VAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 305 s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
+.+|++|.+.. +..........+++.++++++...++...+-.... .--.+.+..+++.++|.|..+...
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI--KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCChHHHHHH
Confidence 66666664433 33222222267889999999988888876633221 112366778889999988766543
No 80
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.10 E-value=3.1e-05 Score=89.97 Aligned_cols=169 Identities=21% Similarity=0.236 Sum_probs=94.7
Q ss_pred CCCcccCCChH---HHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHH
Q 045150 167 ENPVGFEDDTD---VLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRII 243 (841)
Q Consensus 167 ~~~vGr~~~~~---~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 243 (841)
++++|.+..+. .+...+..+ ....+.++|++|+||||||+.+++ .....|. .++.+. ....+ .+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~---~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~~-~~i~d-ir--- 94 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD---RVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAVL-AGVKD-LR--- 94 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhhh-hhhHH-HH---
Confidence 35788877664 344454433 345678999999999999999998 3444441 111110 00000 01
Q ss_pred HHhhhccccccCCCCCCCHHHHHHHHHHHc--cCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEE--ecchH--
Q 045150 244 KSFNIISSAEEGGLENKSEEDLERCLYKSL--QGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIIT--TRNRE-- 315 (841)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvT--tR~~~-- 315 (841)
+....+.+.+ .+++.+|||||++.. ..++.+...+. .|+.++|+ |.+..
T Consensus 95 --------------------~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~ 151 (725)
T PRK13341 95 --------------------AEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFE 151 (725)
T ss_pred --------------------HHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhh
Confidence 1111121222 246779999999743 44555555443 35555553 34321
Q ss_pred HhhcCCCcceeEecCCCChhHHHHHHHhHhcCC-----CCCCchhHHHHHHHHHHcCCCch
Q 045150 316 VAERSDEKTYVHKLRFLRGDESWLLFCEKAFRG-----TNREKGLEKLGREMVEKCDGLPL 371 (841)
Q Consensus 316 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-----~~~~~~~~~~~~~i~~~c~glPl 371 (841)
+..........+.+++++.++...++.+.+-.. .....--.+....|++.+.|...
T Consensus 152 l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 152 VNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 222211122679999999999999988765310 11112224456778888887654
No 81
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=3.9e-05 Score=87.20 Aligned_cols=195 Identities=15% Similarity=0.104 Sum_probs=108.3
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
.++||-+..++.|...+..+. -...+.++|..|+||||+|+.+.+.-.-...+. +..+.....-+.|..
T Consensus 16 ~divGQe~vv~~L~~~l~~~r--l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~-- 84 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR--LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQ-- 84 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHc--
Confidence 468998888888888887654 235678999999999999999987311110000 000111111111110
Q ss_pred hhcccccc---CCCCCCCHHHHHHHHHH----HccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEE-EecchHH
Q 045150 247 NIISSAEE---GGLENKSEEDLERCLYK----SLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVII-TTRNREV 316 (841)
Q Consensus 247 ~~~~~~~~---~~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TtR~~~v 316 (841)
....+- ........++....+.+ -..+++-++|+|+++.. ...+.+...+-......++|+ ||....+
T Consensus 85 --g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 85 --GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred --CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 000000 00000112222222211 12467779999999754 456666666655444555555 4444444
Q ss_pred hhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHH
Q 045150 317 AERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
..........+.+++++.++....+.+.+-.... ..-.+....|++.++|.+.-+..+
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4332223378999999999999888776532221 112345577899999988754433
No 82
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.09 E-value=5.2e-06 Score=87.53 Aligned_cols=95 Identities=16% Similarity=0.061 Sum_probs=62.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCc--cCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQD--YQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCL 269 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 269 (841)
..++|+|.+|.|||||++.+++... .++|+..+||.+++. .++.++++.++..+-......+......-.....+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 4789999999999999999999532 337999999999866 7889999988654433221111100000001122222
Q ss_pred HHH-ccCceEEEEEecCCC
Q 045150 270 YKS-LQGKTYLMVLDDVWR 287 (841)
Q Consensus 270 ~~~-L~~kr~LlVlDdv~~ 287 (841)
... -++++++|++|++..
T Consensus 248 e~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHcCCCeEEEEEChhH
Confidence 222 268999999999954
No 83
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=7.7e-05 Score=79.54 Aligned_cols=200 Identities=12% Similarity=0.118 Sum_probs=113.5
Q ss_pred CCCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCC----CCcEEEEEeCCccCHHHHHHH
Q 045150 166 EENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNK----FECCAWVSVSQDYQFQYLLLR 241 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~ 241 (841)
-..++|-++....+...+..+. -...+.|+|..|+||||+|+.+.+. +-.+ +... .....+......+.
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr--l~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~---~~~~~~~~c~~c~~ 94 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK--LHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPE---TLADPDPASPVWRQ 94 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC--CCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCcc---ccCCCCCCCHHHHH
Confidence 3568999999999999887764 3457899999999999999998873 2110 1111 00111111112222
Q ss_pred HHHHhhh-------ccccccCC-CCCCCHHHHHHHHHHHc-----cCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcE
Q 045150 242 IIKSFNI-------ISSAEEGG-LENKSEEDLERCLYKSL-----QGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSR 306 (841)
Q Consensus 242 i~~~l~~-------~~~~~~~~-~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 306 (841)
|...-.. +....... -.....++.. .+.+++ .+++-++|+|+++.. ...+.+...+........
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 2221000 00000000 0112234433 344444 356779999999754 345555555544333444
Q ss_pred -EEEEecchHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHh
Q 045150 307 -VIITTRNREVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLG 377 (841)
Q Consensus 307 -ilvTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 377 (841)
|++|++...+..........+.+.+++.++..+++...... . . -..+....+++.++|.|..+..+.
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~-~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--Q-G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--c-C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45555544443333333378999999999999999874321 1 1 123456789999999998665443
No 84
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.0001 Score=78.87 Aligned_cols=200 Identities=20% Similarity=0.222 Sum_probs=125.0
Q ss_pred CCCCcccCCChHHHHHHHhcCC-CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCc--EEEEEeCCccCHHHHHHHH
Q 045150 166 EENPVGFEDDTDVLLSKLLAGD-EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFEC--CAWVSVSQDYQFQYLLLRI 242 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~i 242 (841)
++.+.+|+++.+++...|..-- .....-+.|+|..|.|||+.++.|.+ +++..... +++|++-...++.+++..|
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 3448999999999998876421 11223488999999999999999998 44443221 7899999999999999999
Q ss_pred HHHhhhccccccCCCCCCCHHHHHHHHHHHc--cCceEEEEEecCCChhhH--HHHHhhCCCCC-CCcEEEE--EecchH
Q 045150 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSL--QGKTYLMVLDDVWRKVDW--ENLRRAFPDNK-NGSRVII--TTRNRE 315 (841)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~~~--~~l~~~l~~~~-~gs~ilv--TtR~~~ 315 (841)
+.+++..+. ......+....+.+.+ .++.+++|||+++....- +.+-..+.... ..++|++ .+-+..
T Consensus 94 ~~~~~~~p~------~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 94 LNKLGKVPL------TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHcCCCCC------CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHH
Confidence 999973221 1233456667777776 568999999999754221 22222222211 1454433 333332
Q ss_pred Hhh--------cCCCcceeEecCCCChhHHHHHHHhHhcCC---CCCCch-hHHHHHHHHHHcCCCchHHHH
Q 045150 316 VAE--------RSDEKTYVHKLRFLRGDESWLLFCEKAFRG---TNREKG-LEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 316 v~~--------~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~-~~~~~~~i~~~c~glPlai~~ 375 (841)
... ..+. ..+..+|-+.+|-.+.+..++-.. ..-.+. ++-++...++..|..-.|+..
T Consensus 168 ~~~~ld~rv~s~l~~--~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 168 FLDYLDPRVKSSLGP--SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred HHHHhhhhhhhccCc--ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 222 2222 347789999999999988877322 222333 333344444444444444444
No 85
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=9.7e-05 Score=79.90 Aligned_cols=176 Identities=13% Similarity=0.055 Sum_probs=104.1
Q ss_pred CCcccCCChHHHHHHHhcCCC-------CCeEEEEEEccCCCcHHHHHHHHhcCcccc------------------CCCC
Q 045150 168 NPVGFEDDTDVLLSKLLAGDE-------PRRLVISIYGMGGLGKTTLAKKLYHSSDVK------------------NKFE 222 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F~ 222 (841)
+++|-+..++.+...+..+.. .-...+.++|+.|+||||+|+.+.+.-.-. +.+.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 578888888888888876531 024568899999999999999987621000 0111
Q ss_pred cEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHH----ccCceEEEEEecCCCh--hhHHHHHh
Q 045150 223 CCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKS----LQGKTYLMVLDDVWRK--VDWENLRR 296 (841)
Q Consensus 223 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~ 296 (841)
-+.++.... .....+++...+... ..+++-++|+|+++.. ...+.+..
T Consensus 86 D~~~i~~~~--------------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk 139 (394)
T PRK07940 86 DVRVVAPEG--------------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLK 139 (394)
T ss_pred CEEEecccc--------------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHH
Confidence 112221100 011122222211111 1345568888999754 34455666
Q ss_pred hCCCCCCCcEEEEEecc-hHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHH
Q 045150 297 AFPDNKNGSRVIITTRN-REVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 297 ~l~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 375 (841)
.+.....+..+|++|.+ ..+..........+.+.+++.++..+.+.... + ...+.+..++..++|.|..+..
T Consensus 140 ~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~------~~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 140 AVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G------VDPETARRAARASQGHIGRARR 212 (394)
T ss_pred HhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C------CCHHHHHHHHHHcCCCHHHHHH
Confidence 66554556666665555 34443333333789999999999988887432 1 1134567889999999976644
Q ss_pred H
Q 045150 376 L 376 (841)
Q Consensus 376 ~ 376 (841)
+
T Consensus 213 l 213 (394)
T PRK07940 213 L 213 (394)
T ss_pred H
Confidence 3
No 86
>PRK09087 hypothetical protein; Validated
Probab=98.07 E-value=5.1e-05 Score=75.88 Aligned_cols=137 Identities=13% Similarity=0.051 Sum_probs=82.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
+.+.|+|..|+|||+|++.+++.. . ..+++.. ....+ .. .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~--~-----~~~i~~~------~~~~~-----------------------~~----~ 84 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKS--D-----ALLIHPN------EIGSD-----------------------AA----N 84 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhc--C-----CEEecHH------HcchH-----------------------HH----H
Confidence 568999999999999999988742 1 1244321 00000 00 1
Q ss_pred HccCceEEEEEecCCCh----hhHHHHHhhCCCCCCCcEEEEEecc---------hHHhhcCCCcceeEecCCCChhHHH
Q 045150 272 SLQGKTYLMVLDDVWRK----VDWENLRRAFPDNKNGSRVIITTRN---------REVAERSDEKTYVHKLRFLRGDESW 338 (841)
Q Consensus 272 ~L~~kr~LlVlDdv~~~----~~~~~l~~~l~~~~~gs~ilvTtR~---------~~v~~~~~~~~~~~~l~~L~~~~~~ 338 (841)
.+.+ -+|++||+... +.+-.+...+. ..|..||+|++. +.+...+... .+++++++++++-.
T Consensus 85 ~~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~g-l~~~l~~pd~e~~~ 159 (226)
T PRK09087 85 AAAE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA-TVVEIGEPDDALLS 159 (226)
T ss_pred hhhc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCC-ceeecCCCCHHHHH
Confidence 1111 27888999532 22222222222 235668888873 2233333333 78999999999999
Q ss_pred HHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHH
Q 045150 339 LLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 339 ~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 375 (841)
+++.+++-... -.--+++..-|++.+.|..-++..
T Consensus 160 ~iL~~~~~~~~--~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 160 QVIFKLFADRQ--LYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHHHHhhhhHHHHHH
Confidence 99998884422 222356677788888877766654
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.06 E-value=1.6e-07 Score=96.49 Aligned_cols=288 Identities=17% Similarity=0.115 Sum_probs=162.2
Q ss_pred CceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccC-c-
Q 045150 482 SLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFP-S- 559 (841)
Q Consensus 482 ~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp-~- 559 (841)
..+|.|.+.++.... .+.+..+-..++++..|++.+|.+ +++..+...-..++.|++|+|..|..++... .
T Consensus 138 g~lk~LSlrG~r~v~--~sslrt~~~~CpnIehL~l~gc~~-----iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG--DSSLRTFASNCPNIEHLALYGCKK-----ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred cccccccccccccCC--cchhhHHhhhCCchhhhhhhccee-----ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH
Confidence 457888888775432 345667778999999999999985 5542333333468999999999975555321 1
Q ss_pred ccCCCCCCCeeecC-CcccccCccccccccccceecccccccCCcccccccccccccccchhcccc----ccccCCCceE
Q 045150 560 SIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCKSWIRVNT----AKLVNLRELH 634 (841)
Q Consensus 560 ~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~l----~~l~~L~~L~ 634 (841)
-...+++|++|+++ |...+- .+++.+ ...+.+++.+.+.+|.......+ +.+..+.+++
T Consensus 211 la~gC~kL~~lNlSwc~qi~~-------~gv~~~---------~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISG-------NGVQAL---------QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLN 274 (483)
T ss_pred HHHhhhhHHHhhhccCchhhc-------CcchHH---------hccchhhhhhhhcccccccHHHHHHHhccChHhhccc
Confidence 23368899999999 632221 122222 23445566665555652222222 2334455555
Q ss_pred EeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCC-CCCCcccceeEeccccC--C-CCccccc
Q 045150 635 IVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQP-LSHCQRLVDLRLTGRMT--T-LPKDMHV 710 (841)
Q Consensus 635 l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~L~~~~~--~-~p~~~~~ 710 (841)
+..|.... ...+. ..-..+..|+.|..+++.. .... .+.. -.++++|+.|.+.++.. . --..++.
T Consensus 275 l~~c~~lT--D~~~~-~i~~~c~~lq~l~~s~~t~-------~~d~-~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 275 LQHCNQLT--DEDLW-LIACGCHALQVLCYSSCTD-------ITDE-VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred hhhhcccc--chHHH-HHhhhhhHhhhhcccCCCC-------CchH-HHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 54553221 11111 2233456788888888732 1121 1112 34577888888887431 1 0011222
Q ss_pred cCCCccEEEEEeccCCCCC-hhhh-hhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEc-
Q 045150 711 LLPNLECLSLKVVLPEENP-MPAL-EMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVE- 787 (841)
Q Consensus 711 l~~~L~~L~L~~~~l~~~~-~~~l-~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~- 787 (841)
-++.|+.+++..|.+..+. +..+ .++|.|+.|.|+++...... ....+.....+...|+.|.+++|+ .+++-..+
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~-gi~~l~~~~c~~~~l~~lEL~n~p-~i~d~~Le~ 421 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE-GIRHLSSSSCSLEGLEVLELDNCP-LITDATLEH 421 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh-hhhhhhhccccccccceeeecCCC-CchHHHHHH
Confidence 2578888888887543221 2222 36788888888875222111 001112223456678888888888 55543222
Q ss_pred cCccccccccccccccCCC
Q 045150 788 ERAMPMLRGLKIPSDIPNL 806 (841)
Q Consensus 788 ~~~~p~L~~L~l~~~c~~L 806 (841)
...+++|+.+++. +|...
T Consensus 422 l~~c~~Leri~l~-~~q~v 439 (483)
T KOG4341|consen 422 LSICRNLERIELI-DCQDV 439 (483)
T ss_pred HhhCcccceeeee-chhhh
Confidence 3457788888888 78765
No 88
>PLN03025 replication factor C subunit; Provisional
Probab=98.06 E-value=5.3e-05 Score=80.64 Aligned_cols=181 Identities=18% Similarity=0.141 Sum_probs=102.3
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCc-EEEEEeCCccCHHHHHHHHHHHh
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFEC-CAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
+++|.++.++.+..++..+. ..-+.++|++|+||||+|+.+++.- ....|.. ++-+..+..... +.++++++.+
T Consensus 14 ~~~g~~~~~~~L~~~~~~~~---~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~-~~vr~~i~~~ 88 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDGN---MPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGI-DVVRNKIKMF 88 (319)
T ss_pred HhcCcHHHHHHHHHHHhcCC---CceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccH-HHHHHHHHHH
Confidence 57888777777777766543 2346799999999999999998731 1222321 222222222221 1223333222
Q ss_pred hhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-HHhhcCCCc
Q 045150 247 NIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNR-EVAERSDEK 323 (841)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~ 323 (841)
...... .-.++.-++|+|+++.. ...+.+...+......+++++++... .+.......
T Consensus 89 ~~~~~~-------------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 89 AQKKVT-------------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred Hhcccc-------------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 111000 00245679999999764 33344444444334456777766442 221111112
Q ss_pred ceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHH
Q 045150 324 TYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 324 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 374 (841)
...++++++++++....+...+-..... --.+....|++.++|-.-.+.
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 2678999999999998888776433222 123556788889988775443
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=8e-05 Score=84.56 Aligned_cols=199 Identities=14% Similarity=0.121 Sum_probs=107.7
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCC--CCcEEEEEeCCccCHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNK--FECCAWVSVSQDYQFQYLLLRIIK 244 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i~~ 244 (841)
+++||-+..++.|..++..+. -...+.++|..|+||||+|+.+.+.---.+. ...... ..+.....-+.|..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r--l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~ 89 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR--LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDS 89 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHc
Confidence 368897777888888887654 3457789999999999999999652100000 000000 00111111111100
Q ss_pred Hhhhcccc-ccCCCCCCCHHHHHHHHHHH----ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe-cchHH
Q 045150 245 SFNIISSA-EEGGLENKSEEDLERCLYKS----LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITT-RNREV 316 (841)
Q Consensus 245 ~l~~~~~~-~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTt-R~~~v 316 (841)
+....- .-........++..+.+... ..++.-++|||+++.. ..++.+...+.......++|++| ....+
T Consensus 90 --g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 90 --GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred --CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 000000 00000011122222222211 1345568999999854 46777777776555556666555 43443
Q ss_pred hhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHH
Q 045150 317 AERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 375 (841)
..........+++++++.++..+.+.+.+-..... --.+....|++.++|.+.-+..
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 33222223789999999999988888766332221 1235567888899988765543
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=4.9e-05 Score=85.24 Aligned_cols=182 Identities=12% Similarity=0.088 Sum_probs=107.1
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCcccc-------------------CCCCcEEEE
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVK-------------------NKFECCAWV 227 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv 227 (841)
+++||-+..++.+..++..+. -...+.++|+.|+||||+|+.+.+.---. +.|.-++.+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~--l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY--LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC--CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 368999999999999987664 23567899999999999999988731111 112222333
Q ss_pred EeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCc
Q 045150 228 SVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGS 305 (841)
Q Consensus 228 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 305 (841)
..+....+.++ ++++..+.. .-..++.-++|+|+++.. +..+.+...+......+
T Consensus 94 daas~~~v~~i-R~l~~~~~~----------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~ 150 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPY----------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHV 150 (509)
T ss_pred cccccCCHHHH-HHHHHHHhh----------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCe
Confidence 22221122211 122221111 011356678999999854 45666777666555567
Q ss_pred EEEEEecc-hHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHH
Q 045150 306 RVIITTRN-REVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 306 ~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 375 (841)
++|++|.+ ..+..........+++++++.++....+...+-..... --.+....|++.++|.+.-+..
T Consensus 151 ~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 151 KFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHH
Confidence 66665543 33332222222678899999998777665554322221 1234456788889998865543
No 91
>PRK04195 replication factor C large subunit; Provisional
Probab=98.05 E-value=4.9e-05 Score=85.65 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=104.8
Q ss_pred CCCcccCCChHHHHHHHhcCCC-CCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDE-PRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKS 245 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 245 (841)
.+++|.+..++.+..|+..-.. ...+.+.|+|++|+||||+|+.++++ . .|+ ++-++.+...+ ...+..++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l--~~~-~ielnasd~r~-~~~i~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--Y--GWE-VIELNASDQRT-ADVIERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--c--CCC-EEEEccccccc-HHHHHHHHHH
Confidence 3589999999999999864221 12578999999999999999999984 2 132 23334443222 2222333222
Q ss_pred hhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChh------hHHHHHhhCCCCCCCcEEEEEecch-HHhh
Q 045150 246 FNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV------DWENLRRAFPDNKNGSRVIITTRNR-EVAE 318 (841)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~ 318 (841)
..... .....++-+||+|+++... .+..+...+.. . +..||+|+.+. ....
T Consensus 88 ~~~~~--------------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-~-~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 88 AATSG--------------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK-A-KQPIILTANDPYDPSL 145 (482)
T ss_pred hhccC--------------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc-C-CCCEEEeccCccccch
Confidence 21100 0011367899999997642 34555555542 2 23456555432 1111
Q ss_pred -cCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHH
Q 045150 319 -RSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 319 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 374 (841)
........+.+.+++.++....+...+...... --.+....|++.++|-...+.
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 111223678999999999888887766433322 123556778888877665543
No 92
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.04 E-value=1.1e-06 Score=97.25 Aligned_cols=216 Identities=17% Similarity=0.150 Sum_probs=126.7
Q ss_pred hccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecCCcccccCccccc
Q 045150 506 FKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLSRCIVQLPPETDM 585 (841)
Q Consensus 506 ~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~lp~~~~~ 585 (841)
+..++.|..|++.+|. ++ .+...+..+++|++|+|++| .|..+.. +..+..|+.|+++.|...-...+..
T Consensus 91 l~~~~~l~~l~l~~n~------i~--~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~~~~ 160 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK------IE--KIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLSGNLISDISGLES 160 (414)
T ss_pred cccccceeeeeccccc------hh--hcccchhhhhcchheecccc-ccccccc-hhhccchhhheeccCcchhccCCcc
Confidence 5566777777777777 65 44433666777777777777 6666643 6666677777777433333334455
Q ss_pred cccccceec---ccccccC--CcccccccccccccccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccC--C
Q 045150 586 MRELRHLIG---KLIGTLP--IENLTNLQTLKYVRCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLK--N 658 (841)
Q Consensus 586 L~~L~~L~~---~~~~~~~--i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~--~ 658 (841)
+++|+.+.. ......+ ...+.+|+.+.+.++....+..+..+..+..+++..+..... ..+..+. +
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~-------~~l~~~~~~~ 233 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKL-------EGLNELVMLH 233 (414)
T ss_pred chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceec-------cCcccchhHH
Confidence 666666632 2222223 377788888888888755566666666666666666653311 2222222 4
Q ss_pred cceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCCCCccccccCCCccEEEEEeccCCCC----Chhhhh
Q 045150 659 LQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTTLPKDMHVLLPNLECLSLKVVLPEEN----PMPALE 734 (841)
Q Consensus 659 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~----~~~~l~ 734 (841)
|+.+++++|.+.... ..+..+.++..|++..+...--..+... +.+..+.+..+.+... .....+
T Consensus 234 L~~l~l~~n~i~~~~----------~~~~~~~~l~~l~~~~n~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (414)
T KOG0531|consen 234 LRELYLSGNRISRSP----------EGLENLKNLPVLDLSSNRISNLEGLERL-PKLSELWLNDNKLALSEAISQEYITS 302 (414)
T ss_pred HHHHhcccCcccccc----------ccccccccccccchhhcccccccccccc-chHHHhccCcchhcchhhhhcccccc
Confidence 889999988443210 3344556677777776533221222222 5566666666655321 112256
Q ss_pred hcccCCeEEEecccC
Q 045150 735 MLSNLTILDLNFYRD 749 (841)
Q Consensus 735 ~l~~L~~L~L~~N~l 749 (841)
..+.++...+.+|..
T Consensus 303 ~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 303 AAPTLVTLTLELNPI 317 (414)
T ss_pred ccccccccccccCcc
Confidence 778888888877643
No 93
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.04 E-value=2e-07 Score=95.75 Aligned_cols=280 Identities=15% Similarity=0.110 Sum_probs=139.2
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccc--c
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRD--F 557 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~--l 557 (841)
.++++..|.+.++.. ..+.....+-..|+.|+.|+|..|.. +++..+-.....+++|+||+++.|..+.. +
T Consensus 162 ~CpnIehL~l~gc~~--iTd~s~~sla~~C~~l~~l~L~~c~~-----iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv 234 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKK--ITDSSLLSLARYCRKLRHLNLHSCSS-----ITDVSLKYLAEGCRKLKYLNLSWCPQISGNGV 234 (483)
T ss_pred hCCchhhhhhhccee--ccHHHHHHHHHhcchhhhhhhcccch-----hHHHHHHHHHHhhhhHHHhhhccCchhhcCcc
Confidence 778888887777663 22344555668899999999999875 55422223455799999999999966553 2
Q ss_pred CcccCCCCCCCeeecC-CcccccCccccccccccceecccccccCCcccccccccccccccch----hccccccccCCCc
Q 045150 558 PSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCKSW----IRVNTAKLVNLRE 632 (841)
Q Consensus 558 p~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~~~----~~~~l~~l~~L~~ 632 (841)
-.-..++.+|+.+-++ |.-..+- .|.+.. +.+..+-.+++..|... ....-..+..|+.
T Consensus 235 ~~~~rG~~~l~~~~~kGC~e~~le-------~l~~~~---------~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 235 QALQRGCKELEKLSLKGCLELELE-------ALLKAA---------AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred hHHhccchhhhhhhhcccccccHH-------HHHHHh---------ccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 2223455666666655 3211100 000000 11112222232233210 1111123455666
Q ss_pred eEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCC-CCCCcccceeEeccccCCCCccccc-
Q 045150 633 LHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQP-LSHCQRLVDLRLTGRMTTLPKDMHV- 710 (841)
Q Consensus 633 L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~L~~~~~~~p~~~~~- 710 (841)
|..+++.... ...+. .-..+..+|+.|.++.|.. +.+. .+.. -.+++.|+.+++.+....+...+..
T Consensus 299 l~~s~~t~~~--d~~l~-aLg~~~~~L~~l~l~~c~~-------fsd~-~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 299 LCYSSCTDIT--DEVLW-ALGQHCHNLQVLELSGCQQ-------FSDR-GFTMLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred hcccCCCCCc--hHHHH-HHhcCCCceEEEeccccch-------hhhh-hhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence 6665554221 11111 2333456777777776632 1111 1111 2345667777766543322222222
Q ss_pred --cCCCccEEEEEeccC-CCCChhhh----hhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceE
Q 045150 711 --LLPNLECLSLKVVLP-EENPMPAL----EMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVE 783 (841)
Q Consensus 711 --l~~~L~~L~L~~~~l-~~~~~~~l----~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~ 783 (841)
-++.|+.|.|+.|.+ ++.....+ ..+..|..|.|+++ +...+........+++|+.+++.+|. ..+.
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~-----p~i~d~~Le~l~~c~~Leri~l~~~q-~vtk 441 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNC-----PLITDATLEHLSICRNLERIELIDCQ-DVTK 441 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCC-----CCchHHHHHHHhhCcccceeeeechh-hhhh
Confidence 257777777777643 22211122 24566777777553 32222222223346677777777766 5544
Q ss_pred EEEc--cCcccccccccc
Q 045150 784 WQVE--ERAMPMLRGLKI 799 (841)
Q Consensus 784 ~~~~--~~~~p~L~~L~l 799 (841)
-++. ...+|+++....
T Consensus 442 ~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 442 EAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhHHHHhhCccceehhh
Confidence 3332 224555544443
No 94
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=5.4e-05 Score=82.99 Aligned_cols=202 Identities=12% Similarity=0.077 Sum_probs=108.9
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEE-eCCccCHHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVS-VSQDYQFQYLLLRIIKS 245 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~ 245 (841)
++++|-+..++.+..++..+. -...+.++|+.|+||||+|+.+.+.-.-...++...|.. +...+..-..-+.+...
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~--~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR--VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC--cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 468898888888888887653 235688999999999999999887311111111111110 00011100111111100
Q ss_pred hhhccccccCCCCCCCHHHHHHHHHHHc-----cCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe-cchHHh
Q 045150 246 FNIISSAEEGGLENKSEEDLERCLYKSL-----QGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITT-RNREVA 317 (841)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~ 317 (841)
....... -.+......+++.+. .+.+ .+++-++|+|+++.. ..++.+...+......+.+|++| +...+.
T Consensus 94 ~~~n~~~-~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 94 TSLNISE-FDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred CCCCeEe-ecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 0000000 000000112233222 2222 355668999999754 46788888877665566666554 444443
Q ss_pred hcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHH
Q 045150 318 ERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 318 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 374 (841)
.........+++.++++++....+...+-... ..--.+.+..|++.++|.+--+.
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 32222226788999999998888777653221 12234567788999999776443
No 95
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=7.1e-05 Score=83.87 Aligned_cols=194 Identities=14% Similarity=0.124 Sum_probs=106.1
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
.+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+.+. +. |.-|.... .+......+.+....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r--l~hA~Lf~GP~GvGKTTlA~~lAk~--L~----C~~~~~~~-~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK--LTHAYIFSGPRGIGKTSIAKIFAKA--IN----CLNPKDGD-CCNSCSVCESINTNQ 86 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHH--hc----CCCCCCCC-CCcccHHHHHHHcCC
Confidence 468999999999998887654 2357889999999999999999873 11 11121110 111111111111110
Q ss_pred hhccccccCCCCCCCHHHHHHHHHH--H--ccCceEEEEEecCCC--hhhHHHHHhhCCCCCCCcEEEE-EecchHHhhc
Q 045150 247 NIISSAEEGGLENKSEEDLERCLYK--S--LQGKTYLMVLDDVWR--KVDWENLRRAFPDNKNGSRVII-TTRNREVAER 319 (841)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~--~--L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~ 319 (841)
...... .........+++...+.. . ..+++-++|+|+++. ...+..+...+........+|+ |+....+...
T Consensus 87 h~Diie-Idaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 87 SVDIVE-LDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCceEE-eccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 000000 000001112222222111 1 123445799999975 3567777777665444555554 4444444332
Q ss_pred CCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchH
Q 045150 320 SDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLA 372 (841)
Q Consensus 320 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 372 (841)
.......+++.++++++....+...+-..... --.+.+..+++.++|.+.-
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~ 216 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRD 216 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHH
Confidence 22223688999999999988888765332211 1234567888999997653
No 96
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.02 E-value=8.3e-05 Score=79.69 Aligned_cols=180 Identities=16% Similarity=0.112 Sum_probs=104.5
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe--CCccCHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV--SQDYQFQYLLLRIIK 244 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~ 244 (841)
.+++|+++.++.+..++.... ...+.++|..|+||||+|+.+.+.- ....+.. .++.+ +..... +..++.+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~---~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~~-~~~~~~i~ 90 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN---MPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERGI-DVIRNKIK 90 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC---CCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccch-HHHHHHHH
Confidence 358899999999988886543 2357999999999999999998731 1122211 22222 221111 11222222
Q ss_pred HhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-HHhhcCC
Q 045150 245 SFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNR-EVAERSD 321 (841)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~ 321 (841)
++..... .-...+-++++|+++.. .....+...+......+++|+++... .+.....
T Consensus 91 ~~~~~~~--------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~ 150 (319)
T PRK00440 91 EFARTAP--------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ 150 (319)
T ss_pred HHHhcCC--------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH
Confidence 2111000 00134568999998753 34556666665544456777766432 2211111
Q ss_pred CcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHH
Q 045150 322 EKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 322 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 374 (841)
.....+++.++++++....+...+-..... -..+....+++.++|.+.-+.
T Consensus 151 sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 151 SRCAVFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred HHhheeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 112578999999999988888776433221 224566788889998876543
No 97
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=5.5e-05 Score=85.63 Aligned_cols=178 Identities=15% Similarity=0.156 Sum_probs=106.5
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccC-------------------CCCcEEEE
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKN-------------------KFECCAWV 227 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv 227 (841)
.++||.+..+..|..++..+. -...+.++|..|+||||+|+.+.+.-.-.. .|..++.+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r--l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR--LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 368999999999999988654 245789999999999999999877311110 01111122
Q ss_pred EeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHH----ccCceEEEEEecCCChh--hHHHHHhhCCCC
Q 045150 228 SVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKS----LQGKTYLMVLDDVWRKV--DWENLRRAFPDN 301 (841)
Q Consensus 228 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~ 301 (841)
..+.. ...+.+.+.+... ..+++-++|+|+++... ..+.+...+...
T Consensus 94 daAs~---------------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP 146 (709)
T PRK08691 94 DAASN---------------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP 146 (709)
T ss_pred ecccc---------------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC
Confidence 21111 1122222222211 23566799999997643 355566665544
Q ss_pred CCCcEEEEEecch-HHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHH
Q 045150 302 KNGSRVIITTRNR-EVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 302 ~~gs~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 375 (841)
....++|++|.+. .+..........+.+++++.++....+.+.+-.... .-..+....|++.++|.+.-+..
T Consensus 147 p~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 147 PEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCHHHHHH
Confidence 4456666666443 222221122256788899999998888876643222 12235567899999998865443
No 98
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.00 E-value=8.7e-06 Score=84.78 Aligned_cols=178 Identities=19% Similarity=0.222 Sum_probs=121.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCc-EEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFEC-CAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERC 268 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (841)
..+-+.++|.|||||||++-.+.. ++..|.. +.++....-.+...+.-.....++..... .+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---------g~~~~~~ 80 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---------GDSAVDT 80 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---------chHHHHH
Confidence 457899999999999999998887 6777865 55565555555555555555556654211 1334456
Q ss_pred HHHHccCceEEEEEecCCChh-hHHHHHhhCCCCCCCcEEEEEecchHHhhcCCCcceeEecCCCChh-HHHHHHHhHhc
Q 045150 269 LYKSLQGKTYLMVLDDVWRKV-DWENLRRAFPDNKNGSRVIITTRNREVAERSDEKTYVHKLRFLRGD-ESWLLFCEKAF 346 (841)
Q Consensus 269 l~~~L~~kr~LlVlDdv~~~~-~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~ 346 (841)
+..+..++|.++|+||..+.. .-..+...+-.+...-.|+.|+|...... +. .++.+.+|+.. ++.++|...+.
T Consensus 81 ~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~---ge-~~~~~~~L~~~d~a~~lf~~ra~ 156 (414)
T COG3903 81 LVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA---GE-VHRRVPSLSLFDEAIELFVCRAV 156 (414)
T ss_pred HHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc---cc-ccccCCccccCCchhHHHHHHHH
Confidence 677788999999999986542 22233333333444556888888665433 22 56777888764 78888887764
Q ss_pred CCCCC---CchhHHHHHHHHHHcCCCchHHHHHhhhhcCC
Q 045150 347 RGTNR---EKGLEKLGREMVEKCDGLPLAIVVLGGLLSTK 383 (841)
Q Consensus 347 ~~~~~---~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~ 383 (841)
..... ...-.....+|.++.+|.|++|...++..+.-
T Consensus 157 ~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl 196 (414)
T COG3903 157 LVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL 196 (414)
T ss_pred HhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc
Confidence 43332 34456678899999999999999988877665
No 99
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.97 E-value=7.9e-05 Score=75.31 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=88.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
..+.|+|+.|+|||+||+.+++. ....-..+.++++..... ...+..+.+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------------~~~~~~~~~~~ 97 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------------FVPEVLEGMEQ 97 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------------hhHHHHHHhhh
Confidence 57899999999999999999983 333333466766532100 00111111111
Q ss_pred HccCceEEEEEecCCCh---hhHHHHH-hhCCC-CCCC-cEEEEEecchH---------HhhcCCCcceeEecCCCChhH
Q 045150 272 SLQGKTYLMVLDDVWRK---VDWENLR-RAFPD-NKNG-SRVIITTRNRE---------VAERSDEKTYVHKLRFLRGDE 336 (841)
Q Consensus 272 ~L~~kr~LlVlDdv~~~---~~~~~l~-~~l~~-~~~g-s~ilvTtR~~~---------v~~~~~~~~~~~~l~~L~~~~ 336 (841)
--+|++||+... ..|+... ..+.. ...| .++|+||+... +.+.+... .+++++++++++
T Consensus 98 -----~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g-~~~~l~~~~~~~ 171 (235)
T PRK08084 98 -----LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG-QIYKLQPLSDEE 171 (235)
T ss_pred -----CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC-ceeeecCCCHHH
Confidence 137899999653 3444322 22211 1123 36889887542 22333332 689999999999
Q ss_pred HHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHH
Q 045150 337 SWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 337 ~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
-.+.+.+++.... -.--+++..-|++.+.|..-++..+
T Consensus 172 ~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 172 KLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 9999887664322 2233566777888888776655443
No 100
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.97 E-value=9.5e-05 Score=80.36 Aligned_cols=174 Identities=14% Similarity=0.166 Sum_probs=98.3
Q ss_pred CCCCcccCCChHHHHHHHhcC---C-------CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCH
Q 045150 166 EENPVGFEDDTDVLLSKLLAG---D-------EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQF 235 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~---~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 235 (841)
..++.|+++.++++.+.+... . -...+-+.++|++|+|||++|+.+++ .....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecch----
Confidence 346889999999998876421 0 01245689999999999999999998 344433 22211
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHc-cCceEEEEEecCCChh----------------hHHHHHhhC
Q 045150 236 QYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSL-QGKTYLMVLDDVWRKV----------------DWENLRRAF 298 (841)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~----------------~~~~l~~~l 298 (841)
..+. ...... .......+.+.. ...+.+|+||+++... .+..+...+
T Consensus 190 ~~l~----~~~~g~------------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~l 253 (364)
T TIGR01242 190 SELV----RKYIGE------------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEL 253 (364)
T ss_pred HHHH----HHhhhH------------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHh
Confidence 1111 110000 011112222222 3467899999987431 122233222
Q ss_pred CC--CCCCcEEEEEecchHHhh-cC---CCcceeEecCCCChhHHHHHHHhHhcCCCCCC-chhHHHHHHHHHHcCCCc
Q 045150 299 PD--NKNGSRVIITTRNREVAE-RS---DEKTYVHKLRFLRGDESWLLFCEKAFRGTNRE-KGLEKLGREMVEKCDGLP 370 (841)
Q Consensus 299 ~~--~~~gs~ilvTtR~~~v~~-~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~-~~~~~~~~~i~~~c~glP 370 (841)
.. ...+.+||.||....... .. +.-...+.+...+.++..++|..++.+..... -+ ...+++.+.|..
T Consensus 254 d~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 254 DGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred hCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 21 123567888887543221 11 11126789999999999999998875543221 12 355666776654
No 101
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00016 Score=78.95 Aligned_cols=180 Identities=14% Similarity=0.172 Sum_probs=103.8
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccc------cCCCCcEE-EEEeCCccCHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDV------KNKFECCA-WVSVSQDYQFQYLL 239 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~~~-wv~vs~~~~~~~~~ 239 (841)
.+++|.+...+.+...+..+. -...+.++|+.|+||||+|+.+.+.-.- ...|...+ -+......+. +-.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~--~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i 93 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH--LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDI 93 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHH
Confidence 357899999999998887653 3468889999999999999999773111 01122211 1111111111 111
Q ss_pred HHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe-cchHH
Q 045150 240 LRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITT-RNREV 316 (841)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTt-R~~~v 316 (841)
+++++++... -..+++-++|+|++... ..++.+...+......+.+|++| ....+
T Consensus 94 ~~l~~~~~~~----------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 94 RNLIDQVRIP----------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred HHHHHHHhhc----------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 1222221100 01245568999998643 34667766665444455555555 33232
Q ss_pred hhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHH
Q 045150 317 AERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 373 (841)
..........++.+++++++....+...+...... --.+....+++.++|.+-.+
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 22212222678999999999988888766433221 12356677888888866544
No 102
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.96 E-value=0.0004 Score=78.83 Aligned_cols=197 Identities=18% Similarity=0.189 Sum_probs=126.7
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC-ccCHHHHHHHHHHHhhhcccccc
Q 045150 176 TDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ-DYQFQYLLLRIIKSFNIISSAEE 254 (841)
Q Consensus 176 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~ 254 (841)
..++.+.|.... +.+++.|..++|.|||||+-.... + ...=..+.|.+... +.++......++..++.-.+...
T Consensus 24 R~rL~~~L~~~~--~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~ 98 (894)
T COG2909 24 RPRLLDRLRRAN--DYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLG 98 (894)
T ss_pred cHHHHHHHhcCC--CceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHHHHHHHHHHHHHhCcccc
Confidence 346666666554 578999999999999999999875 1 22234699999765 45678888889988885433221
Q ss_pred CCC-------CCCCHHHHHHHHHHHcc--CceEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEecchHHhhcCC-
Q 045150 255 GGL-------ENKSEEDLERCLYKSLQ--GKTYLMVLDDVWRK---VDWENLRRAFPDNKNGSRVIITTRNREVAERSD- 321 (841)
Q Consensus 255 ~~~-------~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~- 321 (841)
++. ...+...+.+.+...+. .++..+||||..-. .--..+...+.....+-..|+|||...-.....
T Consensus 99 ~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~l 178 (894)
T COG2909 99 DEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARL 178 (894)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccce
Confidence 110 11223344444444442 46799999998643 222334444455566778999999875322211
Q ss_pred -CcceeEecC----CCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHhhhhcC
Q 045150 322 -EKTYVHKLR----FLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLGGLLST 382 (841)
Q Consensus 322 -~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~ 382 (841)
......++. .++.+|+-++|..... .+-...-.+.+....+|.+-|+..++=.++.
T Consensus 179 Rlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-----l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 179 RLRDELLEIGSEELRFDTEEAAAFLNDRGS-----LPLDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred eehhhHHhcChHhhcCChHHHHHHHHHcCC-----CCCChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 111333333 3788999999877541 1122344678889999999999988877773
No 103
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.94 E-value=5.7e-05 Score=76.52 Aligned_cols=129 Identities=22% Similarity=0.234 Sum_probs=84.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCL 269 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 269 (841)
...-+.+||++|.||||||+.+....+-.. ..||..|....-..-.++|.++....
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~-------------------- 216 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE-------------------- 216 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH--------------------
Confidence 456788999999999999999998533222 56777766544444445555443221
Q ss_pred HHHccCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEE--EecchHHhh--cCCCcceeEecCCCChhHHHHHHHhH
Q 045150 270 YKSLQGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVII--TTRNREVAE--RSDEKTYVHKLRFLRGDESWLLFCEK 344 (841)
Q Consensus 270 ~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~~--~~~~~~~~~~l~~L~~~~~~~lf~~~ 344 (841)
..+..+|..|.+|.|..-.. -+--.++|.-.+|+-++| ||.+....- ..-....++-+++|+.++-..++.+.
T Consensus 217 -~~l~krkTilFiDEiHRFNk-sQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 217 -KSLTKRKTILFIDEIHRFNK-SQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred -HhhhcceeEEEeHHhhhhhh-hhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 12357889999999964321 112245777778887776 776664321 11122378999999999988888773
No 104
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.92 E-value=4.3e-07 Score=99.29 Aligned_cols=109 Identities=22% Similarity=0.206 Sum_probs=56.1
Q ss_pred HHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC-CCccccccCCCccEEEEEeccCCCCC
Q 045150 651 ESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT-LPKDMHVLLPNLECLSLKVVLPEENP 729 (841)
Q Consensus 651 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~-~p~~~~~l~~~L~~L~L~~~~l~~~~ 729 (841)
.++.-++.|++|+|++|++.. ...+..|+.|++|+|++|... +| .++..-..|..|.|++|.++ .
T Consensus 181 ~SLqll~ale~LnLshNk~~~-----------v~~Lr~l~~LkhLDlsyN~L~~vp-~l~~~gc~L~~L~lrnN~l~--t 246 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTK-----------VDNLRRLPKLKHLDLSYNCLRHVP-QLSMVGCKLQLLNLRNNALT--T 246 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhh-----------hHHHHhcccccccccccchhcccc-ccchhhhhheeeeecccHHH--h
Confidence 455555566666666653321 123445556666666655433 33 22222134666777776653 2
Q ss_pred hhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccc
Q 045150 730 MPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVE 778 (841)
Q Consensus 730 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 778 (841)
+..+.+|.+|+.||+++|-+.+..-. .....+..|+.|.|.+||
T Consensus 247 L~gie~LksL~~LDlsyNll~~hseL-----~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 247 LRGIENLKSLYGLDLSYNLLSEHSEL-----EPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhHHhhhhhhccchhHhhhhcchhh-----hHHHHHHHHHHHhhcCCc
Confidence 44566667777777766644332210 011234566666666665
No 105
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00022 Score=80.84 Aligned_cols=194 Identities=16% Similarity=0.088 Sum_probs=105.7
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
+++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+.+.-.-....+ + ..++....-+.|...-
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r--~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~~~~ 83 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR--INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALAPNG 83 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhhccc
Confidence 368999888899998887654 345678999999999999999987311001000 0 0000001111111000
Q ss_pred hhcccc-ccCCCCCCCHHHHH---HHHHHH-ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEE-EecchHHhh
Q 045150 247 NIISSA-EEGGLENKSEEDLE---RCLYKS-LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVII-TTRNREVAE 318 (841)
Q Consensus 247 ~~~~~~-~~~~~~~~~~~~~~---~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~ 318 (841)
...... ..........++.. +.+... ..+++-++|+|+++.. ...+.+...+........+|+ ||....+..
T Consensus 84 ~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 84 PGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHH
Confidence 000000 00000011122221 111111 1356668999999753 566777777766555565554 544444443
Q ss_pred cCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCch
Q 045150 319 RSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPL 371 (841)
Q Consensus 319 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 371 (841)
........+++.+++.++..+.+...+-..... --.+....|++.++|.+.
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 322223789999999999888887765332221 123455678888888775
No 106
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00021 Score=84.31 Aligned_cols=196 Identities=12% Similarity=0.038 Sum_probs=107.5
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
.++||-+..++.|..++..+. -...+.++|..|+||||+|+.+.+.-.-...... ..+.....-+.|...-
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r--i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~g~ 85 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR--INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAPGG 85 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHcCC
Confidence 368998888888988887654 2356889999999999999999774111111100 0000000000000000
Q ss_pred hhccc-cccCCCCCCCHHHHHHHHHH----HccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe-cchHHhh
Q 045150 247 NIISS-AEEGGLENKSEEDLERCLYK----SLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITT-RNREVAE 318 (841)
Q Consensus 247 ~~~~~-~~~~~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~ 318 (841)
..... .....-.....+++.....+ -..+++-++|||+++.. ...+.|...+..-...+.+|++| ....+..
T Consensus 86 ~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 86 PGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 00000 00000001112222221111 12456668999999854 56777777777655566666555 4444444
Q ss_pred cCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHH
Q 045150 319 RSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 319 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 373 (841)
........|++..++.++..+++.+.+-.... ..-.+....|++.++|.+..+
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 33333478999999999988888765522221 122345567889999987543
No 107
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.0002 Score=81.63 Aligned_cols=200 Identities=13% Similarity=0.104 Sum_probs=110.7
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCC--cEEEEEeCCccCHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFE--CCAWVSVSQDYQFQYLLLRIIK 244 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~ 244 (841)
.+++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+.-.-..... ...+-.+..+ ..-+.|..
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr--i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~i~~ 97 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR--IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQAIME 97 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHHHhc
Confidence 468999999999999888664 245788999999999999999987311111000 0000000000 01111111
Q ss_pred HhhhccccccCCCCCCCHHHHHHHHHHH----ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe-cchHHh
Q 045150 245 SFNIISSAEEGGLENKSEEDLERCLYKS----LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITT-RNREVA 317 (841)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~ 317 (841)
.-......- ........+++.+.+... ..+++-++|+|+++.. ...+.+...+.....++++|++| ....+.
T Consensus 98 g~h~Dv~e~-~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 98 GRHVDVLEM-DAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCCceEEe-cccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 100000000 000011223332222111 1345668999999754 45666777766555566666544 444443
Q ss_pred hcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHH
Q 045150 318 ERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 318 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 375 (841)
.........+++.+++.++....+.+.+-..... --.+....|++.++|.+.-+..
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 3333333789999999999998888776332221 2235667889999998865543
No 108
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00024 Score=80.28 Aligned_cols=176 Identities=14% Similarity=0.129 Sum_probs=105.4
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCcccc-------------------CCCCcEEEE
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVK-------------------NKFECCAWV 227 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv 227 (841)
.++||-+..++.+..++..+. -...+.++|..|+||||+|+.+.+.-.-. +.|...+++
T Consensus 16 ~divGq~~v~~~L~~~i~~~~--~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR--LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 368899988888888887654 23567899999999999999997631111 011112222
Q ss_pred EeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHH----ccCceEEEEEecCCCh--hhHHHHHhhCCCC
Q 045150 228 SVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKS----LQGKTYLMVLDDVWRK--VDWENLRRAFPDN 301 (841)
Q Consensus 228 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~ 301 (841)
..+.. ...+++...+... ..+++-++|+|+++.. ...+.+...+...
T Consensus 94 ~~~~~---------------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep 146 (527)
T PRK14969 94 DAASN---------------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP 146 (527)
T ss_pred ecccc---------------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC
Confidence 21111 1122222222111 1356779999999854 3466677777655
Q ss_pred CCCcEEEEEecc-hHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHH
Q 045150 302 KNGSRVIITTRN-REVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 302 ~~gs~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 373 (841)
...+.+|++|.+ ..+..........+++++++.++..+.+.+.+-.... ....+....|++.++|.+.-+
T Consensus 147 p~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 147 PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred CCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 555666655543 3333221222268899999999988887765532221 122345577888999987644
No 109
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.87 E-value=1.6e-05 Score=61.32 Aligned_cols=55 Identities=25% Similarity=0.393 Sum_probs=42.7
Q ss_pred ceeeEEEeecCCcccccccccccch-hhccccCcceeeecCCCcCccccC-cccCCCCCCCeeecC
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHN-KKLGKLIHLKYLGIRGTTFIRDFP-SSIFNLPGLQTLDLS 573 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p-~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~ 573 (841)
++|++|++++|. ++ .+| ..|..+++|++|++++| .+..+| ..+.++++|++|+++
T Consensus 1 p~L~~L~l~~n~------l~--~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 1 PNLESLDLSNNK------LT--EIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLS 57 (61)
T ss_dssp TTESEEEETSST------ES--EECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEET
T ss_pred CcCcEEECCCCC------CC--ccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCc
Confidence 467888888887 77 555 56778888888888888 666665 467888888888888
No 110
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.86 E-value=2.7e-06 Score=82.55 Aligned_cols=217 Identities=19% Similarity=0.209 Sum_probs=103.5
Q ss_pred ccCceeeEEEeecCCcccccccccc---cchhhccccCcceeeecCCCcCcc----ccC-------cccCCCCCCCeeec
Q 045150 507 KRFLLLRVLEIEESGYFSRMLFDNR---LHNKKLGKLIHLKYLGIRGTTFIR----DFP-------SSIFNLPGLQTLDL 572 (841)
Q Consensus 507 ~~~~~Lr~L~L~~~~~~~~~~l~~~---~~p~~i~~L~~L~~L~L~~~~~~~----~lp-------~~i~~L~~L~~L~L 572 (841)
..+..+..++||||. |... .+...|.+-.+|+..++++- ... ++| +.+-+|++|++.+|
T Consensus 27 ~~~d~~~evdLSGNt------igtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 27 EMMDELVEVDLSGNT------IGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred HhhcceeEEeccCCc------ccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 447778888888887 5421 23455666778888888764 222 333 33567888888888
Q ss_pred C-Cccc-ccCcc----ccccccccceecccccccCCc--cc-ccccccccccccchhccccccccCCCceEEeccCCCCc
Q 045150 573 S-RCIV-QLPPE----TDMMRELRHLIGKLIGTLPIE--NL-TNLQTLKYVRCKSWIRVNTAKLVNLRELHIVGGDGQSM 643 (841)
Q Consensus 573 ~-~~~~-~lp~~----~~~L~~L~~L~~~~~~~~~i~--~l-~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 643 (841)
| +-+. +.|+. +.+-+.|.||..+..+.-|++ ++ ..|+.|-. ..-..+-|.|+......|+.. .
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~-------nKKaa~kp~Le~vicgrNRle-n 171 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAY-------NKKAADKPKLEVVICGRNRLE-N 171 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHH-------HhhhccCCCceEEEeccchhc-c
Confidence 8 5322 33433 234445555532221111111 00 01111100 011223345555555555433 2
Q ss_pred CcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC----------CCccccccCC
Q 045150 644 GEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT----------LPKDMHVLLP 713 (841)
Q Consensus 644 g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~----------~p~~~~~l~~ 713 (841)
|........+..-.+|+.+.+..|.+. |.....+ .+..+..+.+|+.|+|..|..+ +|.| +
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L-~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W-----~ 242 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGIR---PEGVTML-AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW-----N 242 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHH-HHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc-----c
Confidence 233322133333356666666666332 2222111 1122334555666666554321 3333 5
Q ss_pred CccEEEEEeccCCCCChhhh----h--hcccCCeEEEecc
Q 045150 714 NLECLSLKVVLPEENPMPAL----E--MLSNLTILDLNFY 747 (841)
Q Consensus 714 ~L~~L~L~~~~l~~~~~~~l----~--~l~~L~~L~L~~N 747 (841)
.|+.|.+..|-++......+ . ..|+|..|...+|
T Consensus 243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 56777777776554333222 1 2456666666555
No 111
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.84 E-value=8.1e-06 Score=62.95 Aligned_cols=56 Identities=36% Similarity=0.438 Sum_probs=28.5
Q ss_pred ccceeEeccc-cCCCCc-cccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecc
Q 045150 691 RLVDLRLTGR-MTTLPK-DMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFY 747 (841)
Q Consensus 691 ~L~~L~L~~~-~~~~p~-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N 747 (841)
+|+.|++++| +..+|. ++..+ ++|+.|++++|.+....+..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l-~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNL-PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTG-TTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCC-CCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3445555544 222333 22233 56666666666555444455566666666666554
No 112
>PRK05642 DNA replication initiation factor; Validated
Probab=97.83 E-value=0.00022 Score=71.96 Aligned_cols=150 Identities=21% Similarity=0.292 Sum_probs=89.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
..+.|+|..|+|||.||+.+++ .....-..++|++..+ +... ...+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~------~~~~------------------------~~~~~~ 93 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLAE------LLDR------------------------GPELLD 93 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHHH------HHhh------------------------hHHHHH
Confidence 5789999999999999999987 3333234567776422 1110 011222
Q ss_pred HccCceEEEEEecCCCh---hhHHH-HHhhCCC-CCCCcEEEEEecchHH--h-------hcCCCcceeEecCCCChhHH
Q 045150 272 SLQGKTYLMVLDDVWRK---VDWEN-LRRAFPD-NKNGSRVIITTRNREV--A-------ERSDEKTYVHKLRFLRGDES 337 (841)
Q Consensus 272 ~L~~kr~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~ilvTtR~~~v--~-------~~~~~~~~~~~l~~L~~~~~ 337 (841)
.+.+-. +||+||+... ..|.. +...+.. ...|..||+|++...- . +.+... .+++++++++++.
T Consensus 94 ~~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g-l~~~l~~~~~e~~ 171 (234)
T PRK05642 94 NLEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA-LVFQMRGLSDEDK 171 (234)
T ss_pred hhhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC-eeeecCCCCHHHH
Confidence 222222 6889999632 34443 3333321 2235678888875321 1 111111 6789999999999
Q ss_pred HHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHh
Q 045150 338 WLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLG 377 (841)
Q Consensus 338 ~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 377 (841)
...+..++....- .--.++..-|++++.|..-.+..+-
T Consensus 172 ~~il~~ka~~~~~--~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 172 LRALQLRASRRGL--HLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999866644322 1224677788888888776654433
No 113
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00032 Score=79.15 Aligned_cols=200 Identities=13% Similarity=0.127 Sum_probs=107.8
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
++++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.-.-....+. ..++....-+.|....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r--i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~ 86 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR--VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGM 86 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCC
Confidence 357887777777777776543 2357889999999999999999874211110000 0011111111111100
Q ss_pred hhccccccCCCCCCCHHHHHHHHHHH-----ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc-hHHhh
Q 045150 247 NIISSAEEGGLENKSEEDLERCLYKS-----LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRN-REVAE 318 (841)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~ 318 (841)
...... -........+++.. +.+. ..+++-++|+|+++.. ...+.+...+........+|++|.. ..+..
T Consensus 87 hpDv~e-Id~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 87 HVDVVE-IDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPV 164 (624)
T ss_pred CCceEE-EecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhH
Confidence 000000 00000011122211 2211 2456779999999754 4566777776543344555555544 44443
Q ss_pred cCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCc-hHHHHHhhh
Q 045150 319 RSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLP-LAIVVLGGL 379 (841)
Q Consensus 319 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~ 379 (841)
........+++++++.++....+...+...... -..+.+..|++.++|.+ .|+..+..+
T Consensus 165 TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 165 TIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred HHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 322223678999999999998888766433221 22355677888888865 566655543
No 114
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.81 E-value=0.0011 Score=67.60 Aligned_cols=194 Identities=15% Similarity=0.117 Sum_probs=115.1
Q ss_pred ChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCcccc----CCCCcEEEEEeCCccCHHHHHHHHHHHhhhcc
Q 045150 175 DTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVK----NKFECCAWVSVSQDYQFQYLLLRIIKSFNIIS 250 (841)
Q Consensus 175 ~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 250 (841)
.++++.++|......+..-+.|||.+|+|||++++++....-.. ..--.++.|.....++...+...|+.+++.+.
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 34556666665554466779999999999999999998631111 11115778888899999999999999999865
Q ss_pred ccccCCCCCCCHHHHHHHHHHHcc-CceEEEEEecCCChh--------hHHHHHhhCCCCCCCcEEEEEecchHHhhcCC
Q 045150 251 SAEEGGLENKSEEDLERCLYKSLQ-GKTYLMVLDDVWRKV--------DWENLRRAFPDNKNGSRVIITTRNREVAERSD 321 (841)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~--------~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 321 (841)
.. ..+...+...+.+.|+ -+--+||+|.+.+.- ..-.....+.+.-.-+-|.+-|+...-+-..+
T Consensus 125 ~~------~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D 198 (302)
T PF05621_consen 125 RP------RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTD 198 (302)
T ss_pred CC------CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccC
Confidence 32 1233445555555663 344589999997631 11122223333333455666665443322211
Q ss_pred C----cceeEecCCCCh-hHHHHHHHhHhc--CCCCC-CchhHHHHHHHHHHcCCCchHHH
Q 045150 322 E----KTYVHKLRFLRG-DESWLLFCEKAF--RGTNR-EKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 322 ~----~~~~~~l~~L~~-~~~~~lf~~~~~--~~~~~-~~~~~~~~~~i~~~c~glPlai~ 374 (841)
. ...++.++.-.. ++...|+..... .-..+ .-...+++..|...++|+.=-+.
T Consensus 199 ~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 199 PQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 1 114556665544 344445433221 11111 23346789999999999875443
No 115
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.81 E-value=0.00044 Score=76.63 Aligned_cols=164 Identities=13% Similarity=0.089 Sum_probs=98.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCC--CcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKF--ECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERC 268 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (841)
..-+.|+|..|+|||+|++.+.+ .+.... ..+++++ ..++...+...+... ......
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~-------------~~~~~~ 199 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS------GDEFARKAVDILQKT-------------HKEIEQ 199 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHHHh-------------hhHHHH
Confidence 34688999999999999999998 333221 2344554 345666666665431 011233
Q ss_pred HHHHccCceEEEEEecCCCh---hhH-HHHHhhCCC-CCCCcEEEEEecch---------HHhhcCCCcceeEecCCCCh
Q 045150 269 LYKSLQGKTYLMVLDDVWRK---VDW-ENLRRAFPD-NKNGSRVIITTRNR---------EVAERSDEKTYVHKLRFLRG 334 (841)
Q Consensus 269 l~~~L~~kr~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~~l~~L~~ 334 (841)
+++.++. .-+||+||+... ..+ +.+...+.. ...|..||+|+... .+...+... -++++++++.
T Consensus 200 ~~~~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G-l~~~L~~pd~ 277 (450)
T PRK14087 200 FKNEICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG-LSIAIQKLDN 277 (450)
T ss_pred HHHHhcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC-ceeccCCcCH
Confidence 4444432 348889999643 122 233332221 12344688886532 122222222 6788999999
Q ss_pred hHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHh
Q 045150 335 DESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLG 377 (841)
Q Consensus 335 ~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 377 (841)
++..+++.+++-.......--.++..-|++.+.|.|-.+.-+.
T Consensus 278 e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 278 KTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 9999999988743221112335677889999999998776554
No 116
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00044 Score=79.31 Aligned_cols=191 Identities=13% Similarity=0.059 Sum_probs=104.9
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
.+++|-+..++.+...+..+. -...+.++|+.|+||||+|+.+++.- ...+.. ..+-.+.. -... .
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r--l~HAYLF~GP~GtGKTt~AriLAk~L-nC~~~~-~~~~pC~~-------C~~~---~ 83 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK--ISHAYLFSGPRGTGKTSVAKIFANAL-NCSHKT-DLLEPCQE-------CIEN---V 83 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCcHHHHHHHHHHHh-cccccC-CCCCchhH-------HHHh---h
Confidence 358898888888988887654 34577899999999999999998631 110100 00000000 0000 0
Q ss_pred hhcccc-ccCCCCCCCHHHH---HHHHHHH-ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEE-EEecchHHhh
Q 045150 247 NIISSA-EEGGLENKSEEDL---ERCLYKS-LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVI-ITTRNREVAE 318 (841)
Q Consensus 247 ~~~~~~-~~~~~~~~~~~~~---~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il-vTtR~~~v~~ 318 (841)
+..... ..........+++ .+.+... ..+++-++|+|+++.. ..+..+...+-.......+| +|++...+..
T Consensus 84 ~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 000000 0000000112222 2222111 1366779999999753 56777777666544455544 5555555543
Q ss_pred cCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHH
Q 045150 319 RSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 319 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 373 (841)
........+++.+++.++....+...+-.... .--.+.+..|++.++|.+.-+
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 32222378999999999988888765532221 112345677889998876543
No 117
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.79 E-value=0.00028 Score=68.34 Aligned_cols=178 Identities=22% Similarity=0.181 Sum_probs=94.3
Q ss_pred CCCcccCCChHHHHHHHhc--CCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLA--GDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIK 244 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 244 (841)
+++||-+.-++.+.-++.. .....+.-+.++|++|+||||||+-+.+ .....|. +++.+.--.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k---------- 88 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEK---------- 88 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--S----------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhh----------
Confidence 5799988888776554432 1122567789999999999999999999 4555542 222211000
Q ss_pred HhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChh--hHHHHHhhCCC--------CCCC----------
Q 045150 245 SFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV--DWENLRRAFPD--------NKNG---------- 304 (841)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~--------~~~g---------- 304 (841)
..++...+.+ + +++-+|.+|.++... .-+.+..++-+ .+.+
T Consensus 89 -----------------~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 -----------------AGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp -----------------CHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred -----------------HHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 1222222222 2 234467778886532 22222222211 1111
Q ss_pred -cEEEEEecchHHhhcCCCcc-eeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHhhhh
Q 045150 305 -SRVIITTRNREVAERSDEKT-YVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLGGLL 380 (841)
Q Consensus 305 -s~ilvTtR~~~v~~~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L 380 (841)
+-|=.|||...+........ -+.+++..+.+|-.++..+.+-.-. -+-..+.+.+|++++.|-|--+.-+-...
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 22345888766555443322 4568999999999999987663322 23345678999999999998665544433
No 118
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00049 Score=79.29 Aligned_cols=198 Identities=12% Similarity=0.041 Sum_probs=110.2
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
+++||-+..++.|..++..+. -...+.++|..|+||||+|+.+.+. +.... +-.....++.....+.|....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~--i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~----~~~~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR--VAHAYLFTGPRGVGKTSTARILAKA--VNCTT----NDPKGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC--CceEEEEECCCCCCHHHHHHHHHHH--hcCCC----CCCCCCCCccCHHHHHHhcCC
Confidence 468999888888888887653 2356789999999999999999873 21100 000001111122222222211
Q ss_pred hhccccccCCCCCCCHHHHHHHHHHH----ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc-hHHhhc
Q 045150 247 NIISSAEEGGLENKSEEDLERCLYKS----LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRN-REVAER 319 (841)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~ 319 (841)
......- ........+++.+.+... ..+++-++|+|+++.. +..+.+...+......+.+|++|.. ..+...
T Consensus 88 ~~d~~~i-~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 88 AVDVIEM-DAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CCeEEEE-eccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 1100000 000111223332222111 1356678999999643 4566777776655555666665543 333332
Q ss_pred CCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHH
Q 045150 320 SDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 320 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 375 (841)
.......+++.+++.++....+...+...... --.+....|++.++|.+..+..
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 22222678899999998888887766432221 2235677899999998865543
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00032 Score=80.11 Aligned_cols=201 Identities=12% Similarity=0.065 Sum_probs=107.3
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEE-eCCccCHHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVS-VSQDYQFQYLLLRIIKS 245 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~ 245 (841)
.++||-+..++.+...+..+. -...+.++|+.|+||||+|+.+.+.-.-...++.-.|.. +...+.....-+.+...
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r--i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR--VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 468898888888888877653 235688999999999999998887311111111001110 00111111111111100
Q ss_pred hhhccccccCCCCCCCHHHHHHHHHHH----ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe-cchHHhh
Q 045150 246 FNIISSAEEGGLENKSEEDLERCLYKS----LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITT-RNREVAE 318 (841)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~ 318 (841)
-...... -.+......+++...+... ..+++-++|+|+++.. ...+.+...+......+.+|++| +...+..
T Consensus 94 ~~~n~~~-~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 94 TSLNISE-FDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred CCCCeEE-ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 0000000 0000011123333322222 2355668999999754 45677777777655556555444 4444443
Q ss_pred cCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchH
Q 045150 319 RSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLA 372 (841)
Q Consensus 319 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 372 (841)
........+++.+++.++....+...+-.... .-..+.+..|++.++|..--
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMRD 224 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHH
Confidence 32233378999999999988777765532221 12245667888999986553
No 120
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00075 Score=75.34 Aligned_cols=177 Identities=13% Similarity=0.109 Sum_probs=104.2
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccc--c-----------------CCCCcEEEE
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDV--K-----------------NKFECCAWV 227 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~-----------------~~F~~~~wv 227 (841)
.+++|-+.....+..++..+. -...+.++|+.|+||||+|+.++..-.- . +.|....++
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~--i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR--VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 357899888889988887654 2356778999999999999998763100 0 011112222
Q ss_pred EeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHH-----ccCceEEEEEecCCCh--hhHHHHHhhCCC
Q 045150 228 SVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKS-----LQGKTYLMVLDDVWRK--VDWENLRRAFPD 300 (841)
Q Consensus 228 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~ 300 (841)
..+.. ...++.. .+.+. ..+++-++|+|+++.. ...+.+...+..
T Consensus 94 daas~---------------------------~gvd~ir-~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe 145 (486)
T PRK14953 94 DAASN---------------------------RGIDDIR-ALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE 145 (486)
T ss_pred eCccC---------------------------CCHHHHH-HHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc
Confidence 21111 1111111 12211 1456779999999754 456667766665
Q ss_pred CCCCcEEEEEe-cchHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHH
Q 045150 301 NKNGSRVIITT-RNREVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 301 ~~~gs~ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 375 (841)
......+|++| +...+..........+.+.+++.++....+...+-.... .--.+....|+..++|.+..+..
T Consensus 146 pp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 146 PPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred CCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 54455555544 443333222222267899999999988887776533221 11234556788888887765543
No 121
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.76 E-value=0.00052 Score=69.29 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=83.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLY 270 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 270 (841)
...+.|+|..|+|||+||+.+++.. ..... .+.+++..... . . +
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~-~~~~~-~~~~i~~~~~~------~----~-----------------------~- 85 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADA-SYGGR-NARYLDAASPL------L----A-----------------------F- 85 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HhCCC-cEEEEehHHhH------H----H-----------------------H-
Confidence 3578899999999999999999841 12222 34455432210 0 0 0
Q ss_pred HHccCceEEEEEecCCChhhH--HHHHhhCCC-CCCCc-EEEEEecchHHhh--------cCCCcceeEecCCCChhHHH
Q 045150 271 KSLQGKTYLMVLDDVWRKVDW--ENLRRAFPD-NKNGS-RVIITTRNREVAE--------RSDEKTYVHKLRFLRGDESW 338 (841)
Q Consensus 271 ~~L~~kr~LlVlDdv~~~~~~--~~l~~~l~~-~~~gs-~ilvTtR~~~v~~--------~~~~~~~~~~l~~L~~~~~~ 338 (841)
... ...-+||+||+.....+ +.+...+.. ...|. .||+|++...... .+.. ...+++.++++++..
T Consensus 86 ~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~-~~~i~l~pl~~~~~~ 163 (227)
T PRK08903 86 DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGW-GLVYELKPLSDADKI 163 (227)
T ss_pred hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhc-CeEEEecCCCHHHHH
Confidence 111 12337889999654222 223333321 12344 3666666433222 1111 168899999998776
Q ss_pred HHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHhhh
Q 045150 339 LLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLGGL 379 (841)
Q Consensus 339 ~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 379 (841)
.++.+.+-... ..--.+....+++.+.|.+..+..+...
T Consensus 164 ~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~ 202 (227)
T PRK08903 164 AALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDA 202 (227)
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 66665432211 1223456777888899999887665543
No 122
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.75 E-value=0.00028 Score=70.33 Aligned_cols=170 Identities=14% Similarity=0.142 Sum_probs=93.6
Q ss_pred HHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCC--CcEEEEEeCCccCHHHHHHHHHHHhhhccccccCC
Q 045150 179 LLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKF--ECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGG 256 (841)
Q Consensus 179 l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 256 (841)
....+..........+.|+|..|+|||.|.+++++ .+.... ..+++++ ..+....++..+....
T Consensus 22 ~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~~------ 87 (219)
T PF00308_consen 22 AAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS------AEEFIREFADALRDGE------ 87 (219)
T ss_dssp HHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE------HHHHHHHHHHHHHTTS------
T ss_pred HHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec------HHHHHHHHHHHHHccc------
Confidence 33334433322344678999999999999999999 444322 2366665 3444555554443210
Q ss_pred CCCCCHHHHHHHHHHHccCceEEEEEecCCChh---hHHHH-HhhCCC-CCCCcEEEEEecchH---------HhhcCCC
Q 045150 257 LENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV---DWENL-RRAFPD-NKNGSRVIITTRNRE---------VAERSDE 322 (841)
Q Consensus 257 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~~l-~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~ 322 (841)
...+++.+++ -=+|++||++... .|... ...+.. ...|.+||+|++... +.+....
T Consensus 88 ---------~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~ 157 (219)
T PF00308_consen 88 ---------IEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW 157 (219)
T ss_dssp ---------HHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC
T ss_pred ---------chhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh
Confidence 1223344442 3378999997542 23321 111111 133668999996432 2222222
Q ss_pred cceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHH
Q 045150 323 KTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 323 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 375 (841)
. -++++++.++++...++.+++-...-. --.+++.-|++.+.+..-.+..
T Consensus 158 G-l~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 158 G-LVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp S-EEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHH
T ss_pred c-chhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHH
Confidence 2 689999999999999999888543322 3346667788887766655543
No 123
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.75 E-value=0.00075 Score=69.52 Aligned_cols=171 Identities=18% Similarity=0.231 Sum_probs=107.6
Q ss_pred CCCCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHH
Q 045150 165 VEENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIK 244 (841)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 244 (841)
.++.+.+|+.+...+...+...+..-+..|-|+|..|.|||.+.+++.+.. .. .-+|+++-..++.+.++..|+.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHH
Confidence 356788999999999998887665345677999999999999999999853 22 2589999999999999999999
Q ss_pred HhhhccccccCCCCC--CCHHHHHHHHHHH--c--cCceEEEEEecCCChhhHHH--------HHhhCCCCCCCcEEEEE
Q 045150 245 SFNIISSAEEGGLEN--KSEEDLERCLYKS--L--QGKTYLMVLDDVWRKVDWEN--------LRRAFPDNKNGSRVIIT 310 (841)
Q Consensus 245 ~l~~~~~~~~~~~~~--~~~~~~~~~l~~~--L--~~kr~LlVlDdv~~~~~~~~--------l~~~l~~~~~gs~ilvT 310 (841)
+.+..... +..... .+.......+.++ . +++.++||||+++...+.+. +...++. + .-+|++
T Consensus 79 ~~~~~d~d-g~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~--~-~i~iil 154 (438)
T KOG2543|consen 79 KSQLADKD-GDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNE--P-TIVIIL 154 (438)
T ss_pred HhccCCCc-hhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC--C-ceEEEE
Confidence 98622111 111111 1112223333331 2 25689999999976543322 2222221 2 233444
Q ss_pred ecchHHhhc---CCC-cceeEecCCCChhHHHHHHHhH
Q 045150 311 TRNREVAER---SDE-KTYVHKLRFLRGDESWLLFCEK 344 (841)
Q Consensus 311 tR~~~v~~~---~~~-~~~~~~l~~L~~~~~~~lf~~~ 344 (841)
+-...-... ++. ...++..+.-+.++-..++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 433222221 222 1256677888889888887653
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.74 E-value=0.00022 Score=76.14 Aligned_cols=146 Identities=20% Similarity=0.206 Sum_probs=83.3
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
++++|.+...+.+..++..+. -..++.++|.+|+||||+|+.+++. .... ...++.+. .. .+.+++.+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~--~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~-~~~i~~~l~~~ 91 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR--IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CR-IDFVRNRLTRF 91 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-cc-HHHHHHHHHHH
Confidence 468999999999999887643 3467888999999999999999883 2222 23344333 11 11122211111
Q ss_pred hhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEecchH-HhhcCCC
Q 045150 247 NIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK---VDWENLRRAFPDNKNGSRVIITTRNRE-VAERSDE 322 (841)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~~~ 322 (841)
... ..+.+.+-++|+||++.. +..+.+...+.....++++|+||.... +......
T Consensus 92 ~~~---------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 92 AST---------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred HHh---------------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 100 001134557899999754 223344444444455678888886432 1111111
Q ss_pred cceeEecCCCChhHHHHHHH
Q 045150 323 KTYVHKLRFLRGDESWLLFC 342 (841)
Q Consensus 323 ~~~~~~l~~L~~~~~~~lf~ 342 (841)
....+.++..+.++...++.
T Consensus 151 R~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred hceEEEeCCCCHHHHHHHHH
Confidence 11456666677777665544
No 125
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.74 E-value=1.3e-06 Score=95.60 Aligned_cols=210 Identities=19% Similarity=0.202 Sum_probs=102.5
Q ss_pred HHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCC-CCCCeeecCCcccccCcc
Q 045150 504 PLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNL-PGLQTLDLSRCIVQLPPE 582 (841)
Q Consensus 504 ~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L-~~L~~L~L~~~~~~lp~~ 582 (841)
.++.-++.+.+|.+-... -.+-.-|-.|..++.||.|.|++| .+... ..+..+ ..|++|.-.
T Consensus 78 ~i~d~lqkt~~lkl~~~p------a~~pt~pi~ifpF~sLr~LElrg~-~L~~~-~GL~~lr~qLe~LIC~--------- 140 (1096)
T KOG1859|consen 78 RILDFLQKTKVLKLLPSP------ARDPTEPISIFPFRSLRVLELRGC-DLSTA-KGLQELRHQLEKLICH--------- 140 (1096)
T ss_pred HHHHHHhhheeeeecccC------CCCCCCCceeccccceeeEEecCc-chhhh-hhhHHHHHhhhhhhhh---------
Confidence 344445555666555544 111011556777888888888888 44431 111111 123333221
Q ss_pred ccccccccceecccccccC-Cccccccccccccccc-chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcc
Q 045150 583 TDMMRELRHLIGKLIGTLP-IENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQ 660 (841)
Q Consensus 583 ~~~L~~L~~L~~~~~~~~~-i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~ 660 (841)
..+..|+++.....+... --..-.|.+.+.+.|. .....++.-++.|+.|+++.|..... ..+..+++|+
T Consensus 141 -~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v-------~~Lr~l~~Lk 212 (1096)
T KOG1859|consen 141 -NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV-------DNLRRLPKLK 212 (1096)
T ss_pred -ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh-------HHHHhccccc
Confidence 123344444221111000 0011234444444444 33445566666777777776653321 4566677777
Q ss_pred eEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCCCCccccccCCCccEEEEEeccCCCC-ChhhhhhcccC
Q 045150 661 FLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTTLPKDMHVLLPNLECLSLKVVLPEEN-PMPALEMLSNL 739 (841)
Q Consensus 661 ~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~-~~~~l~~l~~L 739 (841)
+|+|++|.+.. ++.+. ...|. |..|.+++|-.+.-..+.++ .+|+.|+|+.|-+.+. -+..+..|..|
T Consensus 213 hLDlsyN~L~~--------vp~l~-~~gc~-L~~L~lrnN~l~tL~gie~L-ksL~~LDlsyNll~~hseL~pLwsLs~L 281 (1096)
T KOG1859|consen 213 HLDLSYNCLRH--------VPQLS-MVGCK-LQLLNLRNNALTTLRGIENL-KSLYGLDLSYNLLSEHSELEPLWSLSSL 281 (1096)
T ss_pred ccccccchhcc--------ccccc-hhhhh-heeeeecccHHHhhhhHHhh-hhhhccchhHhhhhcchhhhHHHHHHHH
Confidence 77777764321 11111 11222 66666666644333344454 6667777776655432 23445566666
Q ss_pred CeEEEecccC
Q 045150 740 TILDLNFYRD 749 (841)
Q Consensus 740 ~~L~L~~N~l 749 (841)
+.|+|.+|.+
T Consensus 282 ~~L~LeGNPl 291 (1096)
T KOG1859|consen 282 IVLWLEGNPL 291 (1096)
T ss_pred HHHhhcCCcc
Confidence 6777766643
No 126
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00057 Score=78.56 Aligned_cols=179 Identities=14% Similarity=0.144 Sum_probs=108.7
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCcc---------------------ccCCCCcEE
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSD---------------------VKNKFECCA 225 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~F~~~~ 225 (841)
++++|-+...+.+..++..+. -...+.++|..|+||||+|+.+...-. ...+|+. .
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~--l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK--LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 368998888999999887654 345788999999999999988876311 0112332 2
Q ss_pred EEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCCCC
Q 045150 226 WVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKN 303 (841)
Q Consensus 226 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~ 303 (841)
.+..+...+..+ +++++.++...+ ..+++-++|+|+++.. ..++.+...+.....
T Consensus 94 ~ld~~~~~~vd~-Ir~li~~~~~~P----------------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~ 150 (614)
T PRK14971 94 ELDAASNNSVDD-IRNLIEQVRIPP----------------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPS 150 (614)
T ss_pred EecccccCCHHH-HHHHHHHHhhCc----------------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCC
Confidence 222221111111 112222221100 1245668899999754 567778887776555
Q ss_pred CcEEEEEe-cchHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHH
Q 045150 304 GSRVIITT-RNREVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 304 gs~ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 373 (841)
++.+|++| +...+.........+++++++++++....+...+-.... .--.+.+..|++.++|..--+
T Consensus 151 ~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 151 YAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 66665544 444444433333378999999999998888776533222 112345678888898876544
No 127
>PLN03150 hypothetical protein; Provisional
Probab=97.72 E-value=4e-05 Score=89.10 Aligned_cols=42 Identities=29% Similarity=0.521 Sum_probs=19.1
Q ss_pred cchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC
Q 045150 532 LHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS 573 (841)
Q Consensus 532 ~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~ 573 (841)
.+|..++.|++|++|+|++|.....+|..++.+++|++|+|+
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs 474 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS 474 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECC
Confidence 344444444444444444442223444444444444444444
No 128
>PF14516 AAA_35: AAA-like domain
Probab=97.71 E-value=0.0015 Score=69.78 Aligned_cols=204 Identities=13% Similarity=0.094 Sum_probs=118.0
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCcccc-CCCCcEEEEEeCCc-----cCHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVK-NKFECCAWVSVSQD-----YQFQYLLL 240 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~-----~~~~~~~~ 240 (841)
...|+|...-+++.+.+.... ..+.|.|+-.+|||+|...+.+. .+ ..| .++++++..- .+..+.++
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~G----~~~~I~apRq~GKTSll~~l~~~--l~~~~~-~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQPG----SYIRIKAPRQMGKTSLLLRLLER--LQQQGY-RCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CcccCchHHHHHHHHHHhcCC----CEEEEECcccCCHHHHHHHHHHH--HHHCCC-EEEEEEeecCCCcccCCHHHHHH
Confidence 345678867777777777644 38999999999999999999873 43 234 3557776541 24555555
Q ss_pred HHHHHhhhccccccC---CC--CCCCHHHHHHHHHHHc---cCceEEEEEecCCChh----hHHHHHh---hCCCC-C--
Q 045150 241 RIIKSFNIISSAEEG---GL--ENKSEEDLERCLYKSL---QGKTYLMVLDDVWRKV----DWENLRR---AFPDN-K-- 302 (841)
Q Consensus 241 ~i~~~l~~~~~~~~~---~~--~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~----~~~~l~~---~l~~~-~-- 302 (841)
.+...+...-.-... .. ...........+.+++ .+++.+|+||+++..- ..+++.. .+... .
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 555555443211100 00 0011233444455543 3689999999997531 1112221 11111 0
Q ss_pred --CCcEEEEEecch--HHhhcCC----CcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHH
Q 045150 303 --NGSRVIITTRNR--EVAERSD----EKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 303 --~gs~ilvTtR~~--~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 374 (841)
..+-.++..... ....... .....++|++++.+|...|...+-.. --....++|....+|+|.-+.
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHHHH
Confidence 111112222211 1111111 11157899999999999998876422 111227889999999999999
Q ss_pred HHhhhhcCC
Q 045150 375 VLGGLLSTK 383 (841)
Q Consensus 375 ~~~~~L~~~ 383 (841)
.++..+...
T Consensus 238 ~~~~~l~~~ 246 (331)
T PF14516_consen 238 KACYLLVEE 246 (331)
T ss_pred HHHHHHHHc
Confidence 999888664
No 129
>CHL00181 cbbX CbbX; Provisional
Probab=97.70 E-value=0.0011 Score=68.99 Aligned_cols=133 Identities=16% Similarity=0.116 Sum_probs=72.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
..+.++|.+|.||||+|+.+++...-.+.-...-|+.++. .++ .....+. ........+.+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~g~-----------~~~~~~~~l~~ 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYIGH-----------TAPKTKEVLKK 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHhcc-----------chHHHHHHHHH
Confidence 3578999999999999999977311111111122555442 122 2221110 01122222332
Q ss_pred HccCceEEEEEecCCCh-----------hhHHHHHhhCCCCCCCcEEEEEecchHHhhcCC-------CcceeEecCCCC
Q 045150 272 SLQGKTYLMVLDDVWRK-----------VDWENLRRAFPDNKNGSRVIITTRNREVAERSD-------EKTYVHKLRFLR 333 (841)
Q Consensus 272 ~L~~kr~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~-------~~~~~~~l~~L~ 333 (841)
. .+ -+|++|++... +.-+.+...+.+...+.+||+++....+..... .-...+.+++++
T Consensus 121 a-~g--gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t 197 (287)
T CHL00181 121 A-MG--GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYT 197 (287)
T ss_pred c-cC--CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcC
Confidence 2 22 48999999642 223344455554445567777776444322110 112578999999
Q ss_pred hhHHHHHHHhHhc
Q 045150 334 GDESWLLFCEKAF 346 (841)
Q Consensus 334 ~~~~~~lf~~~~~ 346 (841)
.++..+++...+-
T Consensus 198 ~~el~~I~~~~l~ 210 (287)
T CHL00181 198 PEELLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888877763
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00064 Score=75.42 Aligned_cols=179 Identities=11% Similarity=0.105 Sum_probs=103.5
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCcccc---------------------CCCCcEE
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVK---------------------NKFECCA 225 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~~~~ 225 (841)
.+++|-+..++.+..++..+. -...+.++|..|+||||+|+.+.+.-.-. .+++ .+
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~--i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~ 93 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR--AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VL 93 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eE
Confidence 468999988888888887654 23578899999999999999987631000 0111 11
Q ss_pred EEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCCCC
Q 045150 226 WVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKN 303 (841)
Q Consensus 226 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~ 303 (841)
++.........+ .+.+.+.+.. .-..+++-++|+|+++.. ...+.+...+.....
T Consensus 94 ~i~g~~~~gid~-ir~i~~~l~~----------------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~ 150 (451)
T PRK06305 94 EIDGASHRGIED-IRQINETVLF----------------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQ 150 (451)
T ss_pred EeeccccCCHHH-HHHHHHHHHh----------------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCC
Confidence 111111111111 1111111100 001356678999998643 455667767665444
Q ss_pred CcEEEEEec-chHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHH
Q 045150 304 GSRVIITTR-NREVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 304 gs~ilvTtR-~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 373 (841)
...+|++|. ...+..........++++++++++....+...+-.... .-..+.+..|++.++|.+.-+
T Consensus 151 ~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 151 HVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLRDA 219 (451)
T ss_pred CceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 666666553 33333222222368999999999988888776532211 122456678889998876433
No 131
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.65 E-value=0.00079 Score=70.01 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=71.3
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHH
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKS 272 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (841)
-+.++|.+|.||||+|+.+++--.-.+.....-|+.++. .+ ++..+.+. +.......+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~-----------~~~~~~~~~~~a 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGH-----------TAPKTKEILKRA 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhccc-----------chHHHHHHHHHc
Confidence 578999999999999987766211111111123444442 12 22222111 012222223222
Q ss_pred ccCceEEEEEecCCCh-----------hhHHHHHhhCCCCCCCcEEEEEecchHHhhcCCC-------cceeEecCCCCh
Q 045150 273 LQGKTYLMVLDDVWRK-----------VDWENLRRAFPDNKNGSRVIITTRNREVAERSDE-------KTYVHKLRFLRG 334 (841)
Q Consensus 273 L~~kr~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~-------~~~~~~l~~L~~ 334 (841)
..-+|+||++... +.++.+...+.....+.+||+++........... -...+++++++.
T Consensus 121 ---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ 197 (284)
T TIGR02880 121 ---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSE 197 (284)
T ss_pred ---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCH
Confidence 2358899999622 2344555666555556677777654332221110 025789999999
Q ss_pred hHHHHHHHhHh
Q 045150 335 DESWLLFCEKA 345 (841)
Q Consensus 335 ~~~~~lf~~~~ 345 (841)
+|..+++...+
T Consensus 198 edl~~I~~~~l 208 (284)
T TIGR02880 198 AELLVIAGLML 208 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999988766
No 132
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.65 E-value=0.00032 Score=72.39 Aligned_cols=154 Identities=16% Similarity=0.137 Sum_probs=79.6
Q ss_pred CCcccCCChHHHHHHHhc---------C---CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCH
Q 045150 168 NPVGFEDDTDVLLSKLLA---------G---DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQF 235 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~---------~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 235 (841)
.++|.+..+++|.+.... . ..+...-+.++|++|.||||+|+.+++.-.-.+.-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 467877776665433211 0 112456688999999999999999986210001111112333322
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh----------hhHHHHHhhCCCCCCCc
Q 045150 236 QYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK----------VDWENLRRAFPDNKNGS 305 (841)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs 305 (841)
.++.. ..-+ .........+.+. . .-+|++|+++.. +..+.+...+.......
T Consensus 83 ~~l~~----~~~g-----------~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~ 144 (261)
T TIGR02881 83 ADLVG----EYIG-----------HTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEF 144 (261)
T ss_pred HHhhh----hhcc-----------chHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCE
Confidence 11111 1000 0012222223222 2 248899999742 23344444444433334
Q ss_pred EEEEEecchHH----------hhcCCCcceeEecCCCChhHHHHHHHhHhc
Q 045150 306 RVIITTRNREV----------AERSDEKTYVHKLRFLRGDESWLLFCEKAF 346 (841)
Q Consensus 306 ~ilvTtR~~~v----------~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 346 (841)
.+|+++..... .+.+ ...+.+++++.++..+++.+.+-
T Consensus 145 ~vila~~~~~~~~~~~~~p~L~sRf---~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 145 VLILAGYSDEMDYFLSLNPGLRSRF---PISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EEEecCCcchhHHHHhcChHHHhcc---ceEEEECCCCHHHHHHHHHHHHH
Confidence 55555544322 1221 15688999999999999887764
No 133
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00081 Score=71.81 Aligned_cols=145 Identities=19% Similarity=0.245 Sum_probs=91.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHH
Q 045150 189 PRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERC 268 (841)
Q Consensus 189 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (841)
..+..+.+.|++|+|||+||..++. ...|+++=-++ |.++..+++..-...
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiS-------------------------pe~miG~sEsaKc~~ 586 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIIS-------------------------PEDMIGLSESAKCAH 586 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeC-------------------------hHHccCccHHHHHHH
Confidence 3567788999999999999999987 35677655443 112233344444444
Q ss_pred HHHHc----cCceEEEEEecCCChhhHHHH------------HhhCCCC-CCCcE--EEEEecchHHhhcCCCc---cee
Q 045150 269 LYKSL----QGKTYLMVLDDVWRKVDWENL------------RRAFPDN-KNGSR--VIITTRNREVAERSDEK---TYV 326 (841)
Q Consensus 269 l~~~L----~~kr~LlVlDdv~~~~~~~~l------------~~~l~~~-~~gs~--ilvTtR~~~v~~~~~~~---~~~ 326 (841)
+++.. ++.=-.||+||+...-+|-.+ ...+... .+|-| |+-||....+.+.|+-. ...
T Consensus 587 i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~ 666 (744)
T KOG0741|consen 587 IKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSST 666 (744)
T ss_pred HHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhhe
Confidence 44444 556679999999776555433 3333322 23445 44577777888776521 267
Q ss_pred EecCCCCh-hHHHHHHHhHh-cCCCCCCchhHHHHHHHHHHc
Q 045150 327 HKLRFLRG-DESWLLFCEKA-FRGTNREKGLEKLGREMVEKC 366 (841)
Q Consensus 327 ~~l~~L~~-~~~~~lf~~~~-~~~~~~~~~~~~~~~~i~~~c 366 (841)
|.++.++. ++..+.++..- |. +...+.++++...+|
T Consensus 667 i~Vpnl~~~~~~~~vl~~~n~fs----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 667 IHVPNLTTGEQLLEVLEELNIFS----DDEVRAIAEQLLSKK 704 (744)
T ss_pred eecCccCchHHHHHHHHHccCCC----cchhHHHHHHHhccc
Confidence 88988887 66666665432 22 445566677777766
No 134
>PLN03150 hypothetical protein; Provisional
Probab=97.61 E-value=6.2e-05 Score=87.48 Aligned_cols=92 Identities=16% Similarity=0.252 Sum_probs=75.5
Q ss_pred ceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccC
Q 045150 483 LSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIF 562 (841)
Q Consensus 483 ~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 562 (841)
.++.|.+.++... ..++..+..+++|+.|+|++|. +.+ .+|..++.+++|++|+|++|.....+|..++
T Consensus 419 ~v~~L~L~~n~L~----g~ip~~i~~L~~L~~L~Ls~N~------l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGLR----GFIPNDISKLRHLQSINLSGNS------IRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEEECCCCCcc----ccCCHHHhCCCCCCEEECCCCc------ccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 3667777766553 2456678999999999999999 765 7899999999999999999965568999999
Q ss_pred CCCCCCeeecC-Cccc-ccCccccc
Q 045150 563 NLPGLQTLDLS-RCIV-QLPPETDM 585 (841)
Q Consensus 563 ~L~~L~~L~L~-~~~~-~lp~~~~~ 585 (841)
+|++|++|+|+ |.+. .+|..+..
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhh
Confidence 99999999999 6554 57776654
No 135
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.61 E-value=0.0003 Score=76.77 Aligned_cols=172 Identities=15% Similarity=0.186 Sum_probs=94.5
Q ss_pred CCCcccCCChHHHHHHHhc---C-------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHH
Q 045150 167 ENPVGFEDDTDVLLSKLLA---G-------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQ 236 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 236 (841)
+++.|+++.++++.+.+.. . .-...+-|.++|++|.|||++|+.+++. .... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----H
Confidence 4688999999998887632 1 0123467899999999999999999983 3322 233221 1
Q ss_pred HHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHc-cCceEEEEEecCCCh-------------hhHHHHHhhC---C
Q 045150 237 YLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSL-QGKTYLMVLDDVWRK-------------VDWENLRRAF---P 299 (841)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~-------------~~~~~l~~~l---~ 299 (841)
++ .....+ .. ......+.+.. ...+.+|+|||++.. +....+...+ .
T Consensus 200 ~l----~~~~~g-----------~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld 263 (389)
T PRK03992 200 EL----VQKFIG-----------EG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD 263 (389)
T ss_pred HH----hHhhcc-----------ch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcc
Confidence 11 111100 00 11222222222 346789999999753 1111222222 2
Q ss_pred C--CCCCcEEEEEecchHHhhc-C---CCcceeEecCCCChhHHHHHHHhHhcCCCCCC-chhHHHHHHHHHHcCCC
Q 045150 300 D--NKNGSRVIITTRNREVAER-S---DEKTYVHKLRFLRGDESWLLFCEKAFRGTNRE-KGLEKLGREMVEKCDGL 369 (841)
Q Consensus 300 ~--~~~gs~ilvTtR~~~v~~~-~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~-~~~~~~~~~i~~~c~gl 369 (841)
. ...+.+||.||........ . +.-...+++++.+.++..++|..+..+..... -+ ...+++.+.|.
T Consensus 264 ~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 264 GFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred ccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 1 1234567777765432221 1 11125789999999999999988764433221 12 24455555554
No 136
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.0015 Score=72.91 Aligned_cols=179 Identities=11% Similarity=0.090 Sum_probs=107.5
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccc--cCC----------------CC-cEEEE
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDV--KNK----------------FE-CCAWV 227 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~----------------F~-~~~wv 227 (841)
+++||-+...+.+...+..+. -..+..++|..|.||||+|+.+.+.--- ... +. .++.+
T Consensus 14 deiiGqe~v~~~L~~~I~~gr--l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR--LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC--CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 368998888888888887654 3457789999999999999987763100 000 10 11222
Q ss_pred EeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHH----ccCceEEEEEecCCCh--hhHHHHHhhCCCC
Q 045150 228 SVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKS----LQGKTYLMVLDDVWRK--VDWENLRRAFPDN 301 (841)
Q Consensus 228 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~ 301 (841)
..+.. ...+++.+.+... ..+++-++|+|+++.. +..+.+...+-..
T Consensus 92 daas~---------------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp 144 (535)
T PRK08451 92 DAASN---------------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP 144 (535)
T ss_pred ccccc---------------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc
Confidence 11111 1122333322210 1245668999999754 4566676666555
Q ss_pred CCCcEEEEEecch-HHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHH
Q 045150 302 KNGSRVIITTRNR-EVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 302 ~~gs~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
...+++|++|.+. .+..........+++.+++.++....+...+-..... --.+....|++.++|.+.-+...
T Consensus 145 p~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 145 PSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHH
Confidence 5567766666543 2222222223789999999999888887665332221 12456678899999988655443
No 137
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.58 E-value=0.00016 Score=77.80 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=71.4
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
.++++.++..+.+...|.... .+.++|++|+|||++|+.+++.......|+.+.||++++.++-.+.+....
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~-----~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r--- 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK-----NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR--- 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC-----CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC---
Confidence 457788888888988887543 578899999999999999998543445788899999999888776653220
Q ss_pred hhccccccCCCCCCCHHHHHHHHHHHc--cCceEEEEEecCCCh
Q 045150 247 NIISSAEEGGLENKSEEDLERCLYKSL--QGKTYLMVLDDVWRK 288 (841)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 288 (841)
.. . .+.. ....-..+.+.+.. .++++++|+|++...
T Consensus 247 -P~--~--vgy~-~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 247 -PN--G--VGFR-RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred -CC--C--CCeE-ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00 0 0000 00011122222222 247899999999754
No 138
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0025 Score=67.51 Aligned_cols=96 Identities=10% Similarity=0.152 Sum_probs=62.9
Q ss_pred CceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-HHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCC
Q 045150 275 GKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNR-EVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNR 351 (841)
Q Consensus 275 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 351 (841)
+++-++|+|+++.. ...+.+...+-....++.+|+||.+. .+..........+.+.+++.++..+.+.... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~---- 179 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-P---- 179 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-c----
Confidence 44555678999854 45666766666545567777777664 3433333333789999999999998887653 1
Q ss_pred CchhHHHHHHHHHHcCCCchHHHHH
Q 045150 352 EKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 352 ~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
....+.+..++..++|.|..+..+
T Consensus 180 -~~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 180 -ESDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -cCChHHHHHHHHHcCCCHHHHHHH
Confidence 111234567789999999866544
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.58 E-value=0.00048 Score=82.34 Aligned_cols=153 Identities=14% Similarity=0.161 Sum_probs=85.5
Q ss_pred CCCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCC------CCcEEE-EEeCCccCHHHH
Q 045150 166 EENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNK------FECCAW-VSVSQDYQFQYL 238 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~w-v~vs~~~~~~~~ 238 (841)
-+.+|||+.++.+++..|..... .-+.++|.+|+||||+|+.+++. +... ....+| +..+.
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~---~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQ---NNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCc---CceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh-------
Confidence 35799999999999999887643 34569999999999999999983 3211 123333 22221
Q ss_pred HHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHc-cCceEEEEEecCCChh-------hHH---HHHhhCCCCCCCcEE
Q 045150 239 LLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSL-QGKTYLMVLDDVWRKV-------DWE---NLRRAFPDNKNGSRV 307 (841)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~-------~~~---~l~~~l~~~~~gs~i 307 (841)
+.... .....-...+...+.+.- .+++.+|++|++.... .-+ -++..+..+ .-++
T Consensus 254 -------l~ag~-----~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~ 319 (852)
T TIGR03345 254 -------LQAGA-----SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRT 319 (852)
T ss_pred -------hhccc-----ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEE
Confidence 00000 000000122222232222 2578999999986431 111 233333221 2456
Q ss_pred EEEecchHHhhcCC------CcceeEecCCCChhHHHHHHHhH
Q 045150 308 IITTRNREVAERSD------EKTYVHKLRFLRGDESWLLFCEK 344 (841)
Q Consensus 308 lvTtR~~~v~~~~~------~~~~~~~l~~L~~~~~~~lf~~~ 344 (841)
|-||.......... .....+.+++++.++..+++...
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 65555432211111 11268999999999999997543
No 140
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.0011 Score=76.06 Aligned_cols=193 Identities=14% Similarity=0.094 Sum_probs=102.3
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
+++||-+...+.+...+..+. -...+.++|..|+||||+|+.+.+.---....+. ..++....-+.|...-
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~--~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR--VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEGR 86 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcCC
Confidence 468999988888888887653 2356789999999999999998873110011000 0000000000110000
Q ss_pred hhccccccCCCCCCCHHHH---HHHHHHH-ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEE-EecchHHhhc
Q 045150 247 NIISSAEEGGLENKSEEDL---ERCLYKS-LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVII-TTRNREVAER 319 (841)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~---~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~ 319 (841)
...... -.+......++. ...+... ..+++-++|+|+++.. ...+.+...+-.......+|+ ||....+...
T Consensus 87 ~~d~~e-id~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 87 SVDVFE-IDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCeee-eeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 000000 000000111222 1111110 1345668999999754 456667766665444555554 5555555443
Q ss_pred CCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCch
Q 045150 320 SDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPL 371 (841)
Q Consensus 320 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 371 (841)
.......+++++++.++....+...+-.... .--.+....|++.++|..-
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi--~i~~~al~~la~~a~G~lr 215 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGI--SISDAALALVARKGDGSMR 215 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHH
Confidence 3333367889999999888777665432221 1223456678888888664
No 141
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.0014 Score=75.36 Aligned_cols=199 Identities=13% Similarity=0.064 Sum_probs=108.3
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
.+++|.+.....|..++..+. -...+.++|..|+||||+|+.+++.-. ....+.. ....+...+..+.+....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r--l~~a~Lf~Gp~G~GKttlA~~lAk~L~-c~~~~~~----~~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR--IAPAYLFTGPRGTGKTSSARILAKSLN-CLNSDKP----TPEPCGKCELCRAIAAGN 88 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC--CCceEEEECCCCCChHHHHHHHHHHhc-CCCcCCC----CCCCCcccHHHHHHhcCC
Confidence 368898888888888887653 234678999999999999999987411 1111000 001111112222222111
Q ss_pred hhccccccCCCCCCCHHHHHHHHHHH----ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEec-chHHhhc
Q 045150 247 NIISSAEEGGLENKSEEDLERCLYKS----LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTR-NREVAER 319 (841)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~~~ 319 (841)
........ .......+++.+.+... ..+++-++|+|+++.. ..++.+...+........+|++|. ...+...
T Consensus 89 h~D~~ei~-~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 89 ALDVIEID-AASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CccEEEEe-ccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 11000000 00111223333332211 1355668999999754 467777777765444555555444 3333332
Q ss_pred CCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHH
Q 045150 320 SDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 320 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 375 (841)
.......+++..++.++....+...+-..... --.+....|++.++|.+..+..
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 22223678888999988887777655332211 1134567888999998765543
No 142
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=1.3e-05 Score=78.88 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=36.2
Q ss_pred HHhccCceeeEEEeecCCcccccccccc-cchhhccccCcceeeecCCCcC---ccccCcccCCCCCCCeeecC
Q 045150 504 PLFKRFLLLRVLEIEESGYFSRMLFDNR-LHNKKLGKLIHLKYLGIRGTTF---IRDFPSSIFNLPGLQTLDLS 573 (841)
Q Consensus 504 ~~~~~~~~Lr~L~L~~~~~~~~~~l~~~-~~p~~i~~L~~L~~L~L~~~~~---~~~lp~~i~~L~~L~~L~L~ 573 (841)
.+=..+..++.|||.+|. +.+. ++-..+.+|++|++|+|+.|.. |+.+| -.+.+|++|-|.
T Consensus 65 ~~~~~~~~v~elDL~~N~------iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLN 129 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNL------ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLN 129 (418)
T ss_pred HHHHHhhhhhhhhcccch------hccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEc
Confidence 334567778888888887 5521 2333455778888888887732 22233 234566666666
No 143
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.0023 Score=72.68 Aligned_cols=197 Identities=12% Similarity=0.087 Sum_probs=109.1
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
.+++|-+..++.+..++..+. -...+.++|..|+||||+|+.+++.---...... ..+..+.+- +.|...-
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~--i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~~~~ 86 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK--IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSIDNDN 86 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHHcCC
Confidence 368998888899999887654 3457889999999999999999874111111000 001111111 1110000
Q ss_pred hhccccccCCCCCCCHHHHHHHHHH----HccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe-cchHHhhc
Q 045150 247 NIISSAEEGGLENKSEEDLERCLYK----SLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITT-RNREVAER 319 (841)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~~ 319 (841)
...... -.+......+++...... -..+++-++|+|++... ..++.+...+........+|++| ....+...
T Consensus 87 ~~dv~~-idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 87 SLDVIE-IDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCCeEE-ecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 000000 000001112222222211 12456678999999754 45777777776555566666555 33444332
Q ss_pred CCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHH
Q 045150 320 SDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 320 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 375 (841)
.......++.++++.++....+...+..... .--.+....|++.++|.+..+..
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2222367899999999988888776643322 12245667788899998765443
No 144
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=6.7e-05 Score=52.90 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=20.7
Q ss_pred eeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCcccc
Q 045150 511 LLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDF 557 (841)
Q Consensus 511 ~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~l 557 (841)
+|++|++++|. ++ .+|..+++|++|++|++++| .+..+
T Consensus 2 ~L~~L~l~~N~------i~--~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQ------IT--DLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSSS-------S--SHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCCC------Cc--ccCchHhCCCCCCEEEecCC-CCCCC
Confidence 45666666665 55 45555666666666666666 44443
No 145
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.51 E-value=0.00081 Score=74.67 Aligned_cols=161 Identities=12% Similarity=0.141 Sum_probs=88.5
Q ss_pred CCCcccCCChHHHHHHHhcC----------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCC-----CCcEEEEEeCC
Q 045150 167 ENPVGFEDDTDVLLSKLLAG----------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNK-----FECCAWVSVSQ 231 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~ 231 (841)
.++.|.+..++++.+.+... .-...+-+.++|++|.|||++|+.+++. .... +....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 35778998888888775421 1123456899999999999999999984 3322 22344555433
Q ss_pred ccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHc-cCceEEEEEecCCCh---------hh-----HHHHHh
Q 045150 232 DYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSL-QGKTYLMVLDDVWRK---------VD-----WENLRR 296 (841)
Q Consensus 232 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~---------~~-----~~~l~~ 296 (841)
. ++ +...... .......+....++.. .+++.+|+||+++.. .+ ...+..
T Consensus 260 ~----eL----l~kyvGe--------te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~ 323 (512)
T TIGR03689 260 P----EL----LNKYVGE--------TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS 323 (512)
T ss_pred h----hh----cccccch--------HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH
Confidence 1 11 1100000 0000011222222221 357899999999742 11 123333
Q ss_pred hCCCC--CCCcEEEEEecchHHhhcC----CCcceeEecCCCChhHHHHHHHhHh
Q 045150 297 AFPDN--KNGSRVIITTRNREVAERS----DEKTYVHKLRFLRGDESWLLFCEKA 345 (841)
Q Consensus 297 ~l~~~--~~gs~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (841)
.+... ..+..||.||......... +.-...++++..+.++..++|..+.
T Consensus 324 ~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 324 ELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 34321 1234455566544322211 1112578999999999999998876
No 146
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.50 E-value=0.0016 Score=71.91 Aligned_cols=156 Identities=16% Similarity=0.181 Sum_probs=89.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCC--CcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKF--ECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERC 268 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (841)
...+.|+|..|+|||+||+.+++ .+.... ..+++++. .++..++...+... ..+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----------~~~~---- 192 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSS------EKFTNDFVNALRNN-----------KMEE---- 192 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----------CHHH----
Confidence 35689999999999999999998 343333 23566653 33344444444321 1122
Q ss_pred HHHHccCceEEEEEecCCChh---hH-HHHHhhCCC-CCCCcEEEEEecch--H-------HhhcCCCcceeEecCCCCh
Q 045150 269 LYKSLQGKTYLMVLDDVWRKV---DW-ENLRRAFPD-NKNGSRVIITTRNR--E-------VAERSDEKTYVHKLRFLRG 334 (841)
Q Consensus 269 l~~~L~~kr~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~ilvTtR~~--~-------v~~~~~~~~~~~~l~~L~~ 334 (841)
+.+.+++ .-+|||||+.... .+ +.+...+.. ...|..+|+|+... . +...+... ..+.+++.+.
T Consensus 193 ~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g-~~v~i~~pd~ 270 (405)
T TIGR00362 193 FKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWG-LVVDIEPPDL 270 (405)
T ss_pred HHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCC-eEEEeCCCCH
Confidence 2233322 2388999997431 11 222222211 12345577877642 1 11222221 5789999999
Q ss_pred hHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHH
Q 045150 335 DESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 335 ~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 373 (841)
++...++...+-.... .--.++...|++.+.|..-.+
T Consensus 271 ~~r~~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 271 ETRLAILQKKAEEEGL--ELPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHH
Confidence 9999999988754322 222466777888888776543
No 147
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=1.2e-05 Score=79.23 Aligned_cols=59 Identities=31% Similarity=0.387 Sum_probs=37.5
Q ss_pred eeeEEEeecCCcccccccccccchhhcc-ccCcceeeecCCCcCccc---cCcccCCCCCCCeeecCCcc
Q 045150 511 LLRVLEIEESGYFSRMLFDNRLHNKKLG-KLIHLKYLGIRGTTFIRD---FPSSIFNLPGLQTLDLSRCI 576 (841)
Q Consensus 511 ~Lr~L~L~~~~~~~~~~l~~~~~p~~i~-~L~~L~~L~L~~~~~~~~---lp~~i~~L~~L~~L~L~~~~ 576 (841)
.+..|.+.+|. +.+...-..|+ ...+++.|+|.+| .+.. +-.-+.+|+.|++|+|+||.
T Consensus 46 a~ellvln~~~------id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 46 ALELLVLNGSI------IDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred chhhheecCCC------CCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCc
Confidence 44466677776 54211122233 4678999999999 5553 33335688999999999653
No 148
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=0.0025 Score=67.58 Aligned_cols=176 Identities=15% Similarity=0.086 Sum_probs=110.4
Q ss_pred CCCCCCcccCCChHHHHHHHhcCC-CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHH
Q 045150 164 DVEENPVGFEDDTDVLLSKLLAGD-EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRI 242 (841)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 242 (841)
..++.++||+.+++.+.+++...- .....-+-|.|.+|.|||.+...++.+..-...=..++.+.+..--....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 346789999999999999987542 2245678899999999999999999862222211245677666556677888888
Q ss_pred HHHhhhccccccCCCCCCCHHHHHHHHHHHccC-c-eEEEEEecCCChhh--HHHHHhhCC-CCCCCcEEEEEecchH--
Q 045150 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSLQG-K-TYLMVLDDVWRKVD--WENLRRAFP-DNKNGSRVIITTRNRE-- 315 (841)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-k-r~LlVlDdv~~~~~--~~~l~~~l~-~~~~gs~ilvTtR~~~-- 315 (841)
...+....... ....+....+.+..++ + -+|+|+|.++.... -..+...|. ..-+++|+|+.---..
T Consensus 227 ~~~~~q~~~s~------~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 227 FSSLLQDLVSP------GTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHhcCC------chhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhh
Confidence 88873322111 1124556666666643 3 58999999865321 111111221 1234566654332111
Q ss_pred H--------hhcCCCcceeEecCCCChhHHHHHHHhHh
Q 045150 316 V--------AERSDEKTYVHKLRFLRGDESWLLFCEKA 345 (841)
Q Consensus 316 v--------~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (841)
. -......+..+..+|.+.++..+++..+.
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 1 11122334678889999999999999887
No 149
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.49 E-value=9.4e-05 Score=52.14 Aligned_cols=39 Identities=36% Similarity=0.565 Sum_probs=31.9
Q ss_pred CcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccC
Q 045150 541 IHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLP 580 (841)
Q Consensus 541 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp 580 (841)
++|++|++++| .+..+|..+++|++|++|+++ |.+..++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 47999999999 889999889999999999999 6665544
No 150
>PRK06620 hypothetical protein; Validated
Probab=97.49 E-value=0.00084 Score=66.55 Aligned_cols=133 Identities=13% Similarity=0.079 Sum_probs=76.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
+.+.|+|+.|+|||+|++.+++.. .. .++. ..+. . + +
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~--~~~~--------------------------~-~-------~ 81 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIK--DIFF--------------------------N-E-------E 81 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcc--hhhh--------------------------c-h-------h
Confidence 568999999999999999988742 11 1111 0000 0 0 0
Q ss_pred HccCceEEEEEecCCChhh--HHHHHhhCCCCCCCcEEEEEecchHH-------hhcCCCcceeEecCCCChhHHHHHHH
Q 045150 272 SLQGKTYLMVLDDVWRKVD--WENLRRAFPDNKNGSRVIITTRNREV-------AERSDEKTYVHKLRFLRGDESWLLFC 342 (841)
Q Consensus 272 ~L~~kr~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~ilvTtR~~~v-------~~~~~~~~~~~~l~~L~~~~~~~lf~ 342 (841)
..+ ..-++++||+....+ .-.+...+. ..|..||+|++.... .+.+... .+++++++++++...++.
T Consensus 82 ~~~-~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~g-l~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 82 ILE-KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSV-LSILLNSPDDELIKILIF 157 (214)
T ss_pred HHh-cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCC-ceEeeCCCCHHHHHHHHH
Confidence 111 224788899964321 111211121 346689998874432 2222222 589999999999888887
Q ss_pred hHhcCCCCCCchhHHHHHHHHHHcCCCchHH
Q 045150 343 EKAFRGTNREKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 373 (841)
+.+.... -.--+++..-|++.+.|---.+
T Consensus 158 k~~~~~~--l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 158 KHFSISS--VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHHHHcC--CCCCHHHHHHHHHHccCCHHHH
Confidence 7764221 1222456677777777665544
No 151
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.45 E-value=5.3e-05 Score=87.71 Aligned_cols=81 Identities=26% Similarity=0.384 Sum_probs=49.1
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccC-
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFP- 558 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp- 558 (841)
-+|.||+|.+.+-... ...+...+.+|++|+.||+|+++ ++ .+ ..+++|++|+.|.+++= .+..-+
T Consensus 146 ~LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~Tn------I~--nl-~GIS~LknLq~L~mrnL-e~e~~~~ 212 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTN------IS--NL-SGISRLKNLQVLSMRNL-EFESYQD 212 (699)
T ss_pred hCcccceEEecCceec---chhHHHHhhccCccceeecCCCC------cc--Cc-HHHhccccHHHHhccCC-CCCchhh
Confidence 5677777777664432 12345566777777777777777 65 33 56777777777766654 222211
Q ss_pred -cccCCCCCCCeeecC
Q 045150 559 -SSIFNLPGLQTLDLS 573 (841)
Q Consensus 559 -~~i~~L~~L~~L~L~ 573 (841)
..+.+|++|++||+|
T Consensus 213 l~~LF~L~~L~vLDIS 228 (699)
T KOG3665|consen 213 LIDLFNLKKLRVLDIS 228 (699)
T ss_pred HHHHhcccCCCeeecc
Confidence 235667777777777
No 152
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.44 E-value=0.00091 Score=79.44 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=84.9
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCc---cccCCC-CcEEEEEeCCccCHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSS---DVKNKF-ECCAWVSVSQDYQFQYLLLRI 242 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~~~~~i 242 (841)
++++||+.++++++..|..... .-+.++|.+|+|||++|+.+++.- .+...+ ...+|.. +...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~---~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~--- 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKK---NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLL--- 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCC---CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHh---
Confidence 4689999999999998876543 235699999999999999998831 111112 3344432 111111
Q ss_pred HHHhhhccccccCCCCCCCHHHHHHHHHHHc-cCceEEEEEecCCChh-----------hHHHHHhhCCCCCCC-cEEEE
Q 045150 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSL-QGKTYLMVLDDVWRKV-----------DWENLRRAFPDNKNG-SRVII 309 (841)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~-----------~~~~l~~~l~~~~~g-s~ilv 309 (841)
.. .. . .-+.++....+.+.+ +.++.+|++|+++... .-+-++..+. .| -++|-
T Consensus 251 -a~---~~-~------~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~Ig 316 (731)
T TIGR02639 251 -AG---TK-Y------RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIG 316 (731)
T ss_pred -hh---cc-c------cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEE
Confidence 00 00 0 001122222222222 3468899999997321 1223344333 23 24444
Q ss_pred EecchHHhhc------CCCcceeEecCCCChhHHHHHHHhHh
Q 045150 310 TTRNREVAER------SDEKTYVHKLRFLRGDESWLLFCEKA 345 (841)
Q Consensus 310 TtR~~~v~~~------~~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (841)
+|........ .......++++.++.++..+++....
T Consensus 317 aTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred ecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 4443221111 11112578999999999999988544
No 153
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.0034 Score=71.68 Aligned_cols=196 Identities=14% Similarity=0.071 Sum_probs=106.1
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
++++|.+...+.+..++..+. -...+.++|..|.||||+|+.+.+.---...-+ ...++....-+.|....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~--~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK--ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGS 86 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCC
Confidence 468999999999999888754 245778899999999999999876310000000 00111111111111100
Q ss_pred hhccccccCCCCCCCHHHHHHHHHH--H--ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEE-EecchHHhhc
Q 045150 247 NIISSAEEGGLENKSEEDLERCLYK--S--LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVII-TTRNREVAER 319 (841)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~--~--L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~ 319 (841)
...... -....+...+++...+.+ + ..+++-++|+|+++.. ..+..+...+........+|+ ||....+...
T Consensus 87 ~~dv~e-idaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 87 LMDVIE-IDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCeEE-eeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 000000 000001112222222111 1 2456778999999754 567777777665444455554 4444443332
Q ss_pred CCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHH
Q 045150 320 SDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 320 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 374 (841)
.......++..+++.++....+...+-..... --.+....|++.++|.+..+.
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 22223678899999999888887765322211 123556778888888776543
No 154
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.0038 Score=65.67 Aligned_cols=197 Identities=13% Similarity=0.115 Sum_probs=111.3
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCc---c---------c-cCCCCcEEEEEeCCccC
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSS---D---------V-KNKFECCAWVSVSQDYQ 234 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~---------~-~~~F~~~~wv~vs~~~~ 234 (841)
+++|-+..++.+...+..+. -.....++|..|+||+++|..+.+.- . + ...++-..|+.-....+
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r--l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR--IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 57888888888888887764 24689999999999999998876631 0 0 12233345553110000
Q ss_pred HHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHc-----cCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEE
Q 045150 235 FQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSL-----QGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRV 307 (841)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i 307 (841)
-..+-.+-++..+.... .......++. +.+.+.+ .+++-++|+|+++.. ...+.+...+-...+..-|
T Consensus 83 g~~~~~~~~~~~~~~~~----~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fI 157 (314)
T PRK07399 83 GKLITASEAEEAGLKRK----APPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLI 157 (314)
T ss_pred ccccchhhhhhcccccc----ccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 00000111111110000 0011222333 2333333 466779999999754 4566666666544433334
Q ss_pred EEEecchHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHH
Q 045150 308 IITTRNREVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 308 lvTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
++|+....+..........+.+.++++++..+.+........ .......++..++|.|..+...
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-----~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-----LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-----chhHHHHHHHHcCCCHHHHHHH
Confidence 455554444444434448999999999999999987642111 1111357889999999766543
No 155
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.39 E-value=0.0023 Score=71.74 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=90.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCC--cEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFE--CCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERC 268 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (841)
..-+.|+|..|+|||+||+.+.+ .+...+. .+++++.. ++..++...+... .. ..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----------~~----~~ 204 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----------TM----EE 204 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----------cH----HH
Confidence 35689999999999999999999 4544432 35566532 3333344443211 11 22
Q ss_pred HHHHccCceEEEEEecCCCh---hhH-HHHHhhCCC-CCCCcEEEEEecchH---------HhhcCCCcceeEecCCCCh
Q 045150 269 LYKSLQGKTYLMVLDDVWRK---VDW-ENLRRAFPD-NKNGSRVIITTRNRE---------VAERSDEKTYVHKLRFLRG 334 (841)
Q Consensus 269 l~~~L~~kr~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~~l~~L~~ 334 (841)
+.+.++ +.-+|||||+... ..+ +.+...+.. ...|..||+||.... +...+... .++++++.+.
T Consensus 205 ~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g-l~v~i~~pd~ 282 (450)
T PRK00149 205 FKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWG-LTVDIEPPDL 282 (450)
T ss_pred HHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCC-eeEEecCCCH
Confidence 333333 2348999999642 111 222222211 112445777776431 22223222 5799999999
Q ss_pred hHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHH
Q 045150 335 DESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 335 ~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 373 (841)
++...++..++-... ..--.++..-|++.+.|..-.+
T Consensus 283 ~~r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 283 ETRIAILKKKAEEEG--IDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHHHHHHHcC--CCCCHHHHHHHHcCcCCCHHHH
Confidence 999999998875422 1223456777888888776543
No 156
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.36 E-value=0.0033 Score=68.63 Aligned_cols=116 Identities=23% Similarity=0.232 Sum_probs=77.7
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHH
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKS 272 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (841)
++.|.|+-++||||+++.+... .... .+++..-...... ..+.+.++.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~--------------------------~~l~d~~~~~ 87 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDR--------------------------IELLDLLRAY 87 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcch--------------------------hhHHHHHHHH
Confidence 9999999999999999777663 2222 4555432211110 1111112221
Q ss_pred c---cCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchHH-----hhcCCCcceeEecCCCChhHHHHH
Q 045150 273 L---QGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNREV-----AERSDEKTYVHKLRFLRGDESWLL 340 (841)
Q Consensus 273 L---~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-----~~~~~~~~~~~~l~~L~~~~~~~l 340 (841)
. ..++..|+||.|....+|......+.+.++. +|++|+-+..+ +....+....+++.||+..|...+
T Consensus 88 ~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 88 IELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred HHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 1 1277899999999999999998888877766 89998887653 333334447899999999988654
No 157
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.35 E-value=0.00092 Score=61.61 Aligned_cols=89 Identities=21% Similarity=0.072 Sum_probs=48.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
..+.|+|.+|+||||+|+.+.+. .......++++..+........... ...... .............+.+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~ 72 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGG------KKASGSGELRLRLALA 72 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhc------cCCCCCHHHHHHHHHH
Confidence 47899999999999999999983 3333334666655443222111111 000000 0111112223334444
Q ss_pred HccCc-eEEEEEecCCChhh
Q 045150 272 SLQGK-TYLMVLDDVWRKVD 290 (841)
Q Consensus 272 ~L~~k-r~LlVlDdv~~~~~ 290 (841)
..+.. ..+|++|+++....
T Consensus 73 ~~~~~~~~viiiDei~~~~~ 92 (148)
T smart00382 73 LARKLKPDVLILDEITSLLD 92 (148)
T ss_pred HHHhcCCCEEEEECCcccCC
Confidence 44433 48999999987543
No 158
>PRK08116 hypothetical protein; Validated
Probab=97.34 E-value=0.00064 Score=69.93 Aligned_cols=101 Identities=25% Similarity=0.365 Sum_probs=56.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
..+.++|..|+|||.||..+++. +..+-..++++++ .+++..+........ ..+ ...+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~~--------~~~----~~~~~~ 174 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSSG--------KED----ENEIIR 174 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhccc--------ccc----HHHHHH
Confidence 35889999999999999999994 4333344666653 334444443332211 011 122333
Q ss_pred HccCceEEEEEecCCC--hhhHHH--HHhhCCC-CCCCcEEEEEecc
Q 045150 272 SLQGKTYLMVLDDVWR--KVDWEN--LRRAFPD-NKNGSRVIITTRN 313 (841)
Q Consensus 272 ~L~~kr~LlVlDdv~~--~~~~~~--l~~~l~~-~~~gs~ilvTtR~ 313 (841)
.+.+-. ||||||+.. ..+|.. +...+.. -..|..+|+||..
T Consensus 175 ~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 175 SLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred HhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 344333 899999943 344433 2222221 1235568888863
No 159
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.33 E-value=2.7e-05 Score=75.79 Aligned_cols=254 Identities=17% Similarity=0.130 Sum_probs=144.8
Q ss_pred CCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccc-------hhhccccCcceeeecCCCcC
Q 045150 481 NSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLH-------NKKLGKLIHLKYLGIRGTTF 553 (841)
Q Consensus 481 ~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~-------p~~i~~L~~L~~L~L~~~~~ 553 (841)
+..+..+.+++|....--...+...+.+-++|++.+++.-. +.. ..+ ++ ...+-+|++|+..+||+|-.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f--tgr-~kd-e~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF--TGR-DKD-ELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh--hcc-cHH-HHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 44556667777655321123445566677788888877642 000 111 22 34567889999999998843
Q ss_pred ccccCc----ccCCCCCCCeeecC-CcccccCc-cccccccccce-ecccccccCCccccccccccccccc------chh
Q 045150 554 IRDFPS----SIFNLPGLQTLDLS-RCIVQLPP-ETDMMRELRHL-IGKLIGTLPIENLTNLQTLKYVRCK------SWI 620 (841)
Q Consensus 554 ~~~lp~----~i~~L~~L~~L~L~-~~~~~lp~-~~~~L~~L~~L-~~~~~~~~~i~~l~~L~~L~l~~~~------~~~ 620 (841)
-...|+ .|+.-.+|.+|.++ |.+..+.. .++ +.|.|| ++.. ..+-+.|++.....|. ...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~la~nKK-----aa~kp~Le~vicgrNRlengs~~~~ 177 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFHLAYNKK-----AADKPKLEVVICGRNRLENGSKELS 177 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHHHHHHhh-----hccCCCceEEEeccchhccCcHHHH
Confidence 334443 46677899999999 44332221 111 234444 2111 2333556666555554 112
Q ss_pred ccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccc
Q 045150 621 RVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGR 700 (841)
Q Consensus 621 ~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~ 700 (841)
...+..-.+|+.+.+..|.+...|...+.+..+..+.+|+.|+|..|.++-....... ..+...+.|+.|.+..|
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La-----~al~~W~~lrEL~lnDC 252 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA-----DALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH-----HHhcccchhhhccccch
Confidence 2334445688899999888765555555556677788999999999865432211111 12445567888888876
Q ss_pred cCCC---Cc---ccc-ccCCCccEEEEEeccCCCCCh-----hhh--hhcccCCeEEEecccCC
Q 045150 701 MTTL---PK---DMH-VLLPNLECLSLKVVLPEENPM-----PAL--EMLSNLTILDLNFYRDS 750 (841)
Q Consensus 701 ~~~~---p~---~~~-~l~~~L~~L~L~~~~l~~~~~-----~~l--~~l~~L~~L~L~~N~l~ 750 (841)
..+- .. .+. .+.|+|..|....|.+.+... +.+ ..+|-|..|.+.+|.+.
T Consensus 253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 5321 11 111 115889999888886543221 111 35666777777666554
No 160
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.33 E-value=0.0017 Score=71.71 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=84.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLY 270 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 270 (841)
..-+.|+|..|+|||+||+.+++. +....-.+++++. ..+...+...+... . ...++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~--------------~-~~~f~ 197 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG--------------E-MQRFR 197 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc--------------h-HHHHH
Confidence 356889999999999999999983 4333334556652 33334444443211 0 12233
Q ss_pred HHccCceEEEEEecCCChhh--H--HHHHhhCCC-CCCCcEEEEEecch---------HHhhcCCCcceeEecCCCChhH
Q 045150 271 KSLQGKTYLMVLDDVWRKVD--W--ENLRRAFPD-NKNGSRVIITTRNR---------EVAERSDEKTYVHKLRFLRGDE 336 (841)
Q Consensus 271 ~~L~~kr~LlVlDdv~~~~~--~--~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~~l~~L~~~~ 336 (841)
+.++. .-+|++||+..... + +.+...+.. ...|..||+||... .+...+... ..+++.+++.++
T Consensus 198 ~~~~~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~G-l~~~l~~pd~e~ 275 (445)
T PRK12422 198 QFYRN-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWG-IAIPLHPLTKEG 275 (445)
T ss_pred HHccc-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCC-eEEecCCCCHHH
Confidence 33333 34888899864321 1 122222110 01245688887542 122223222 688999999999
Q ss_pred HHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCC
Q 045150 337 SWLLFCEKAFRGTNREKGLEKLGREMVEKCDGL 369 (841)
Q Consensus 337 ~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~gl 369 (841)
...++.+++-..... --.++..-|+..+.|.
T Consensus 276 r~~iL~~k~~~~~~~--l~~evl~~la~~~~~d 306 (445)
T PRK12422 276 LRSFLERKAEALSIR--IEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCC
Confidence 999998877443211 1234445566655543
No 161
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.30 E-value=0.00047 Score=73.51 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=24.7
Q ss_pred ccccceeccccccCceEEEEccCccccccccccccccC--C--C---CCCcccccc
Q 045150 767 PLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIP--N--L---NIPERLRSI 815 (841)
Q Consensus 767 ~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~--~--L---~lp~~l~~l 815 (841)
++|++|.+.+|. .+ .+| .+-.++|+.|+++ ++. . + .+|+++ .|
T Consensus 156 sSLk~L~Is~c~-~i-~LP--~~LP~SLk~L~ls-~n~~~sLeI~~~sLP~nl-~L 205 (426)
T PRK15386 156 PSLKTLSLTGCS-NI-ILP--EKLPESLQSITLH-IEQKTTWNISFEGFPDGL-DI 205 (426)
T ss_pred CcccEEEecCCC-cc-cCc--ccccccCcEEEec-ccccccccCccccccccc-Ee
Confidence 378888887776 33 222 1223577777776 542 2 2 566666 55
No 162
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.30 E-value=0.00059 Score=72.74 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=45.4
Q ss_pred hccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-C-cccccCccc
Q 045150 506 FKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-R-CIVQLPPET 583 (841)
Q Consensus 506 ~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~-~~~~lp~~~ 583 (841)
+..+++++.|++++|. ++ .+|. --.+|+.|.+++|..+..+|..+ ..+|++|+++ | ++..+|..+
T Consensus 48 ~~~~~~l~~L~Is~c~------L~--sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCD------IE--SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCC------Cc--ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccccc
Confidence 4456778888888887 77 6662 12358888888876777777655 3578888888 6 566666643
Q ss_pred c
Q 045150 584 D 584 (841)
Q Consensus 584 ~ 584 (841)
.
T Consensus 115 e 115 (426)
T PRK15386 115 R 115 (426)
T ss_pred c
Confidence 3
No 163
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.30 E-value=0.0029 Score=70.11 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=89.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCC-C-cEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKF-E-CCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERC 268 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (841)
..-+.|+|..|+|||+||+.+++ .+...+ . .++|++. .+.+.++...+... ... .
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----------~~~----~ 186 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----------KLN----E 186 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----------cHH----H
Confidence 34589999999999999999999 444332 3 3666653 34455555444321 111 2
Q ss_pred HHHHccCceEEEEEecCCCh---hhH-HHHHhhCCC-CCCCcEEEEEec-chH----H----hhcCCCcceeEecCCCCh
Q 045150 269 LYKSLQGKTYLMVLDDVWRK---VDW-ENLRRAFPD-NKNGSRVIITTR-NRE----V----AERSDEKTYVHKLRFLRG 334 (841)
Q Consensus 269 l~~~L~~kr~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~ilvTtR-~~~----v----~~~~~~~~~~~~l~~L~~ 334 (841)
+++....+.-+|++||+... ..+ +.+...+.. ...|..||+||. ... + ...+... .++++++.+.
T Consensus 187 f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~g-l~v~i~~pd~ 265 (440)
T PRK14088 187 FREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG-LVAKLEPPDE 265 (440)
T ss_pred HHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcC-ceEeeCCCCH
Confidence 33333334558999999743 111 122222211 112446888874 322 1 1122222 5788999999
Q ss_pred hHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHH
Q 045150 335 DESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 335 ~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 373 (841)
+.-..++.+.+-..... --.++...|++.+.|.--.+
T Consensus 266 e~r~~IL~~~~~~~~~~--l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 266 ETRKKIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHHHHHHHhcCCC--CCHHHHHHHHhccccCHHHH
Confidence 99999998887432222 22456677777777654433
No 164
>PRK08118 topology modulation protein; Reviewed
Probab=97.30 E-value=0.00011 Score=69.90 Aligned_cols=34 Identities=32% Similarity=0.626 Sum_probs=28.0
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcccc-CCCCcEEE
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVK-NKFECCAW 226 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 226 (841)
-|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 48899999999999999999864444 46787776
No 165
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.27 E-value=0.0014 Score=59.63 Aligned_cols=21 Identities=48% Similarity=0.556 Sum_probs=19.4
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 045150 194 ISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~~ 214 (841)
|.|+|.+|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999994
No 166
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.013 Score=61.39 Aligned_cols=96 Identities=9% Similarity=0.141 Sum_probs=62.7
Q ss_pred cCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc-hHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCC
Q 045150 274 QGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRN-REVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTN 350 (841)
Q Consensus 274 ~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 350 (841)
.+++-++|+|+++.. ..-..+...+-.-..++.+|++|.. ..+..........+.+.+++.++....+.... .
T Consensus 111 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~ 186 (319)
T PRK08769 111 YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V 186 (319)
T ss_pred cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C
Confidence 356779999999754 3444555555544456666666654 44444433334788999999999888876531 1
Q ss_pred CCchhHHHHHHHHHHcCCCchHHHHHh
Q 045150 351 REKGLEKLGREMVEKCDGLPLAIVVLG 377 (841)
Q Consensus 351 ~~~~~~~~~~~i~~~c~glPlai~~~~ 377 (841)
+ ...+..++..++|.|+.+....
T Consensus 187 -~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2235678999999998765443
No 167
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.23 E-value=0.0011 Score=66.26 Aligned_cols=184 Identities=18% Similarity=0.152 Sum_probs=109.4
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEE-EEEeCCccCHHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCA-WVSVSQDYQFQYLLLRIIKS 245 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~i~~~ 245 (841)
.+++|-+..+..+.+.+... ...+...+|++|.|||+-|..++..---.+.|.+++ =.++|..-... +.+.=+
T Consensus 36 de~~gQe~vV~~L~~a~~~~---~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~Ki-- 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR---ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREKI-- 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc---CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhhh--
Confidence 46788888888888888772 457889999999999999988887322234555533 23333322111 000000
Q ss_pred hhhccccccCCCCCCCHHHHHHHHHHHc--cCce-EEEEEecCCCh--hhHHHHHhhCCCCCCCcEEE-EEecchHHhhc
Q 045150 246 FNIISSAEEGGLENKSEEDLERCLYKSL--QGKT-YLMVLDDVWRK--VDWENLRRAFPDNKNGSRVI-ITTRNREVAER 319 (841)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il-vTtR~~~v~~~ 319 (841)
.+-..+.....+.. ..++ -.+|||+++.. +.|..+...+.+....++.+ ||+--..+...
T Consensus 110 --------------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 110 --------------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred --------------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 00001100000000 1123 47899999865 68999998888766666654 55443333333
Q ss_pred CCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchH
Q 045150 320 SDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLA 372 (841)
Q Consensus 320 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 372 (841)
.......+..++|.+++...-+...+-....+ -..+..+.|++.++|--.-
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~--~d~~al~~I~~~S~GdLR~ 226 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD--IDDDALKLIAKISDGDLRR 226 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH
Confidence 22223678889999998888887777443332 2235567888888876543
No 168
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.19 E-value=0.0019 Score=77.70 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=84.4
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCc---cccCCC-CcEEEEEeCCccCHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSS---DVKNKF-ECCAWVSVSQDYQFQYLLLRI 242 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~~~~~i 242 (841)
..++||+++++++++.|..... .-+.++|.+|+|||++|+.+++.- .+.... +..+|.- +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~---~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l~--- 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK---NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLLL--- 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc---CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHHh---
Confidence 4689999999999999986543 234699999999999999998731 111111 2345532 111111
Q ss_pred HHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChh----------hHHHHHhhCCCCCCCcEEEEEec
Q 045150 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV----------DWENLRRAFPDNKNGSRVIITTR 312 (841)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~ilvTtR 312 (841)
.+... ...-++.+...+.+.-..++.+|++|+++... .-+-++..+.. + .-++|.+|.
T Consensus 248 ----ag~~~------~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g-~l~~IgaTt 315 (821)
T CHL00095 248 ----AGTKY------RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-G-ELQCIGATT 315 (821)
T ss_pred ----ccCCC------ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-C-CcEEEEeCC
Confidence 01000 00001223333333334578999999995321 11223333322 1 234555555
Q ss_pred chHHhhc------CCCcceeEecCCCChhHHHHHHHh
Q 045150 313 NREVAER------SDEKTYVHKLRFLRGDESWLLFCE 343 (841)
Q Consensus 313 ~~~v~~~------~~~~~~~~~l~~L~~~~~~~lf~~ 343 (841)
....... .......+++...+.++...++..
T Consensus 316 ~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 316 LDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 4433221 112225778888888888777654
No 169
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.19 E-value=0.0018 Score=70.36 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=85.5
Q ss_pred CCCcccCCChHHHHHHHhc---C-------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHH
Q 045150 167 ENPVGFEDDTDVLLSKLLA---G-------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQ 236 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 236 (841)
.++.|.+..++++.+.+.- . .-...+-+.++|++|.|||++|+.+++. ....| +.+..+
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~s------ 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVGS------ 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehH------
Confidence 3578888888887776531 1 1124567899999999999999999983 33333 222111
Q ss_pred HHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh------------h----hHHHHHhhCCC
Q 045150 237 YLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK------------V----DWENLRRAFPD 300 (841)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~------------~----~~~~l~~~l~~ 300 (841)
.+ ...... .....+...+.......+.+|++|+++.. . .+..+...+..
T Consensus 214 ~l----~~k~~g-----------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 214 EF----VQKYLG-----------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred HH----HHHhcc-----------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 11 111100 01122222333333567889999998632 0 11222222221
Q ss_pred --CCCCcEEEEEecchHHhhc-C---CCcceeEecCCCChhHHHHHHHhHhc
Q 045150 301 --NKNGSRVIITTRNREVAER-S---DEKTYVHKLRFLRGDESWLLFCEKAF 346 (841)
Q Consensus 301 --~~~gs~ilvTtR~~~v~~~-~---~~~~~~~~l~~L~~~~~~~lf~~~~~ 346 (841)
...+..||.||........ . +.-...+++...+.++..++|..+.-
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 2235567777765443221 1 11126788988888888888876653
No 170
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.18 E-value=0.0013 Score=71.88 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=85.6
Q ss_pred CCcccCCChHHHHHHHhc---C-------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 168 NPVGFEDDTDVLLSKLLA---G-------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
++.|.+..++++.+.+.- . ......-+.++|++|.|||++|+.+++ .....| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f---i~V~~se------ 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF---LRVVGSE------ 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE---EEEecch------
Confidence 567888888888776631 1 112345688999999999999999998 344444 2222111
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChh------------h----HHHHHhhCCC-
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV------------D----WENLRRAFPD- 300 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------------~----~~~l~~~l~~- 300 (841)
+. ..... .....+...+.....+.+.+|+||+++... . ...+...+..
T Consensus 253 L~----~k~~G-----------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 253 LI----QKYLG-----------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred hh----hhhcc-----------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 11 11000 001112222222234567889999875310 0 1112222211
Q ss_pred -CCCCcEEEEEecchHHhhcC----CCcceeEecCCCChhHHHHHHHhHhcC
Q 045150 301 -NKNGSRVIITTRNREVAERS----DEKTYVHKLRFLRGDESWLLFCEKAFR 347 (841)
Q Consensus 301 -~~~gs~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~ 347 (841)
...+.+||.||......... +.-...+++...+.++..++|..++..
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 12356788777754433221 111268899999999999999877643
No 171
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.15 E-value=0.012 Score=58.17 Aligned_cols=119 Identities=18% Similarity=0.334 Sum_probs=69.7
Q ss_pred CCCCCcccCCChHHHHHHHh---cCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHH
Q 045150 165 VEENPVGFEDDTDVLLSKLL---AGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLR 241 (841)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 241 (841)
.-++++|.+..++.|++--. .+. ...-+.++|..|.|||++++++.+. ....= .--|.|.+.
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~--pannvLL~G~rGtGKSSlVkall~~--y~~~G--LRlIev~k~--------- 89 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGL--PANNVLLWGARGTGKSSLVKALLNE--YADQG--LRLIEVSKE--------- 89 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCC--CCcceEEecCCCCCHHHHHHHHHHH--HhhcC--ceEEEECHH---------
Confidence 34578999999988876443 232 2345778999999999999999883 22211 112222221
Q ss_pred HHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCC---ChhhHHHHHhhCCCC---CCCcEEEE-Eecch
Q 045150 242 IIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVW---RKVDWENLRRAFPDN---KNGSRVII-TTRNR 314 (841)
Q Consensus 242 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~---~~gs~ilv-TtR~~ 314 (841)
++ .+...+.+.+++ .+.||+|++||+. .+.....++..+..+ .+...+|. ||-.+
T Consensus 90 --------------~L--~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 90 --------------DL--GDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred --------------Hh--ccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 00 112333333332 4679999999984 334577777777632 23333444 44444
Q ss_pred HH
Q 045150 315 EV 316 (841)
Q Consensus 315 ~v 316 (841)
+.
T Consensus 152 HL 153 (249)
T PF05673_consen 152 HL 153 (249)
T ss_pred hc
Confidence 43
No 172
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.14 E-value=0.0022 Score=75.32 Aligned_cols=155 Identities=18% Similarity=0.190 Sum_probs=85.1
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCc---cccCC-CCcEEEEEeCCccCHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSS---DVKNK-FECCAWVSVSQDYQFQYLLLRI 242 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~-F~~~~wv~vs~~~~~~~~~~~i 242 (841)
+.++||+.++++++..|..... .-+.++|.+|+|||++|+.+++.. .+... .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~---~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l---- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK---NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL---- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC---CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----
Confidence 4699999999999999987532 234689999999999999998731 11111 23444432 11111
Q ss_pred HHHhhhccccccCCCCCCCHHHHHHHHHHHc-cCceEEEEEecCCCh----------hhHH-HHHhhCCCCCCCcEEEEE
Q 045150 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSL-QGKTYLMVLDDVWRK----------VDWE-NLRRAFPDNKNGSRVIIT 310 (841)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~----------~~~~-~l~~~l~~~~~gs~ilvT 310 (841)
+ .+... . -+.+.....+.+.+ +.++.+|++|+++.. .+.. -++..+.. + .-++|-+
T Consensus 254 l---aG~~~------~-Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g-~i~vIgA 321 (758)
T PRK11034 254 L---AGTKY------R-GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-G-KIRVIGS 321 (758)
T ss_pred h---cccch------h-hhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-C-CeEEEec
Confidence 1 00000 0 01122222222223 456789999999642 1111 13333322 2 2345555
Q ss_pred ecchHHhhcCC------CcceeEecCCCChhHHHHHHHhHh
Q 045150 311 TRNREVAERSD------EKTYVHKLRFLRGDESWLLFCEKA 345 (841)
Q Consensus 311 tR~~~v~~~~~------~~~~~~~l~~L~~~~~~~lf~~~~ 345 (841)
|.......... .....+.++..+.++..+++....
T Consensus 322 Tt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred CChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 54433221111 112578999999999999887643
No 173
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.14 E-value=0.0048 Score=69.62 Aligned_cols=153 Identities=13% Similarity=0.161 Sum_probs=87.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCC--CcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKF--ECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCL 269 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 269 (841)
..+.|+|..|.|||.|++.+++ .....+ -.+++++. .+++.++...+... ....+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yita------eef~~el~~al~~~---------------~~~~f 371 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSS------EEFTNEFINSIRDG---------------KGDSF 371 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc---------------cHHHH
Confidence 4589999999999999999999 443322 23566653 33333433333210 01123
Q ss_pred HHHccCceEEEEEecCCCh---hhHH-HHHhhCCC-CCCCcEEEEEecch---------HHhhcCCCcceeEecCCCChh
Q 045150 270 YKSLQGKTYLMVLDDVWRK---VDWE-NLRRAFPD-NKNGSRVIITTRNR---------EVAERSDEKTYVHKLRFLRGD 335 (841)
Q Consensus 270 ~~~L~~kr~LlVlDdv~~~---~~~~-~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~~l~~L~~~ 335 (841)
++.++. -=+|||||+... ..|. .+...+.. ...|..|||||+.. .+...+... -+++|.+.+.+
T Consensus 372 ~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G-Lvv~I~~PD~E 449 (617)
T PRK14086 372 RRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG-LITDVQPPELE 449 (617)
T ss_pred HHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC-ceEEcCCCCHH
Confidence 333332 247889999643 2222 22222211 12345688888752 122233333 68899999999
Q ss_pred HHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCch
Q 045150 336 ESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPL 371 (841)
Q Consensus 336 ~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 371 (841)
....++.+++-..... --.++..-|++.+.+..-
T Consensus 450 tR~aIL~kka~~r~l~--l~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 450 TRIAILRKKAVQEQLN--APPEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHHHHHHHHhcCCC--CCHHHHHHHHHhccCCHH
Confidence 9999999887543222 224566666666665543
No 174
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.13 E-value=0.0053 Score=74.15 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=37.8
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
+.++||+.++.+++..|..... .-+.++|.+|+|||++|+.+.+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~---~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK---NNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC---CceEEEcCCCCCHHHHHHHHHHH
Confidence 4699999999999999987543 24458999999999999999873
No 175
>CHL00176 ftsH cell division protein; Validated
Probab=97.13 E-value=0.0045 Score=71.35 Aligned_cols=173 Identities=13% Similarity=0.129 Sum_probs=94.3
Q ss_pred CCCcccCCChHHHHHHH---hcCC------CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 167 ENPVGFEDDTDVLLSKL---LAGD------EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L---~~~~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
.+++|.++.++++.+.+ .... ....+-+.++|++|.|||+||+.++.. .... |+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeeccHH----H
Confidence 45788877666655543 2211 112456899999999999999999884 2222 3333211 1
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh------------hh----HHHHHhhCCC-
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK------------VD----WENLRRAFPD- 300 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~------------~~----~~~l~~~l~~- 300 (841)
+ ...... .....+...+.+.....+.+|++||++.. .. +..+...+..
T Consensus 252 f----~~~~~g-----------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~ 316 (638)
T CHL00176 252 F----VEMFVG-----------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF 316 (638)
T ss_pred H----HHHhhh-----------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccc
Confidence 1 000000 01123334444555678899999999642 11 2223333321
Q ss_pred -CCCCcEEEEEecchHHhhc-C---CCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCC
Q 045150 301 -NKNGSRVIITTRNREVAER-S---DEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDG 368 (841)
Q Consensus 301 -~~~gs~ilvTtR~~~v~~~-~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~g 368 (841)
...+-.||.||........ . +.-...+.+...+.++..++++.++-.... ........+++.+.|
T Consensus 317 ~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G 386 (638)
T CHL00176 317 KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPG 386 (638)
T ss_pred cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCC
Confidence 2335566666655433221 1 111267888888999999998887643211 112234567777776
No 176
>PRK07261 topology modulation protein; Provisional
Probab=97.13 E-value=0.00088 Score=63.97 Aligned_cols=66 Identities=21% Similarity=0.357 Sum_probs=41.1
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcccc-CCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVK-NKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
-|.|+|++|+||||||+.+.....+. -+.|...|-.. ....+.++....+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------------~~~~~~~~~~~~~~~ 54 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------------WQERDDDDMIADISN 54 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------------cccCCHHHHHHHHHH
Confidence 37899999999999999998632221 23455555221 111233455666666
Q ss_pred HccCceEEEEEecCCC
Q 045150 272 SLQGKTYLMVLDDVWR 287 (841)
Q Consensus 272 ~L~~kr~LlVlDdv~~ 287 (841)
.+.+.+ .|+|+.-.
T Consensus 55 ~~~~~~--wIidg~~~ 68 (171)
T PRK07261 55 FLLKHD--WIIDGNYS 68 (171)
T ss_pred HHhCCC--EEEcCcch
Confidence 676655 57787743
No 177
>PRK10536 hypothetical protein; Provisional
Probab=97.06 E-value=0.0052 Score=61.36 Aligned_cols=134 Identities=11% Similarity=0.188 Sum_probs=76.2
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEE--e--CCc--c---CHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVS--V--SQD--Y---QFQY 237 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~--v--s~~--~---~~~~ 237 (841)
..+.++......+..++.+. .++.+.|..|.|||+||..+..+.-..+.|+.++-+. + .+. | +..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~-----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK-----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC-----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 34567888888888888653 3899999999999999999887522234455444332 1 110 0 1111
Q ss_pred ----HHHHHHHHhhhccccccCCCCCCCHHHHHHH-----------HHHHccCceE---EEEEecCCChhhHHHHHhhCC
Q 045150 238 ----LLLRIIKSFNIISSAEEGGLENKSEEDLERC-----------LYKSLQGKTY---LMVLDDVWRKVDWENLRRAFP 299 (841)
Q Consensus 238 ----~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-----------l~~~L~~kr~---LlVlDdv~~~~~~~~l~~~l~ 299 (841)
.++-+...+..-.. ....... --.++++..+ +||+|.+.+.+. ..+...+.
T Consensus 130 K~~p~~~pi~D~L~~~~~----------~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~lt 198 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLG----------ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLT 198 (262)
T ss_pred HHHHHHHHHHHHHHHHhC----------hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHh
Confidence 12222222211000 0111111 1235677665 999999976543 45555555
Q ss_pred CCCCCcEEEEEecchHH
Q 045150 300 DNKNGSRVIITTRNREV 316 (841)
Q Consensus 300 ~~~~gs~ilvTtR~~~v 316 (841)
..+.+|++|+|--..++
T Consensus 199 R~g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 199 RLGENVTVIVNGDITQC 215 (262)
T ss_pred hcCCCCEEEEeCChhhc
Confidence 56679999998754433
No 178
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.06 E-value=0.00084 Score=63.01 Aligned_cols=106 Identities=24% Similarity=0.226 Sum_probs=69.9
Q ss_pred CcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecccc-CCCCccccccCCCccEEEEEeccCCCC-Chhhhhh
Q 045150 658 NLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPKDMHVLLPNLECLSLKVVLPEEN-PMPALEM 735 (841)
Q Consensus 658 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~-~~~~l~~ 735 (841)
+...++|++|. +..+..+..++.|..|.+.+|. ..+.+.+..++++|..|.|.+|.+... ....+..
T Consensus 43 ~~d~iDLtdNd-----------l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~ 111 (233)
T KOG1644|consen 43 QFDAIDLTDND-----------LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLAS 111 (233)
T ss_pred ccceecccccc-----------hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhcc
Confidence 45566776662 2234456667788888888764 446666766678899999998877532 2456778
Q ss_pred cccCCeEEEecccCCCCCccccceEEcCCCcccccceecccc
Q 045150 736 LSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAV 777 (841)
Q Consensus 736 l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 777 (841)
||.|++|.+-+|..+....-... -...+|+|+.|++..-
T Consensus 112 ~p~L~~Ltll~Npv~~k~~YR~y---vl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHKKNYRLY---VLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCccceeeecCCchhcccCceeE---EEEecCcceEeehhhh
Confidence 89999999888765543322111 1235888888888754
No 179
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.06 E-value=0.0027 Score=76.34 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=38.3
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
+.++||+.++.+++..|..... .-+.++|.+|+|||++|+.+.+.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~---~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK---NNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc---CceEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999999987643 34568999999999999999883
No 180
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.0089 Score=63.73 Aligned_cols=166 Identities=11% Similarity=0.022 Sum_probs=85.1
Q ss_pred Ccc-cCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 045150 169 PVG-FEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFN 247 (841)
Q Consensus 169 ~vG-r~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 247 (841)
++| -+..++.+...+..+. -.....++|+.|+||||+|+.+.+.---....... .+..+ ..-+.+...-.
T Consensus 7 i~~~q~~~~~~L~~~~~~~~--l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~~~~h 77 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR--LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRIDSGNH 77 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHhcCCC
Confidence 455 4445556666665543 34678999999999999999886631000000000 00000 00000000000
Q ss_pred hccccccCCCCCCCHHHHHHHHHHH----ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-HHhhcC
Q 045150 248 IISSAEEGGLENKSEEDLERCLYKS----LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNR-EVAERS 320 (841)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~ 320 (841)
.+...-..+-.....+++.+.+... ..+++-++|+|+++.. ..-+.+...+.....++.+|++|.+. .+....
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 0000000000011123333222211 2345667999999754 45666777777666677777777653 333333
Q ss_pred CCcceeEecCCCChhHHHHHHHh
Q 045150 321 DEKTYVHKLRFLRGDESWLLFCE 343 (841)
Q Consensus 321 ~~~~~~~~l~~L~~~~~~~lf~~ 343 (841)
......+++.++++++..+.+..
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHH
Confidence 33347899999999998887765
No 181
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.05 E-value=0.00016 Score=83.89 Aligned_cols=79 Identities=27% Similarity=0.338 Sum_probs=40.9
Q ss_pred cccccccccccc----chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccc
Q 045150 606 TNLQTLKYVRCK----SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFA 681 (841)
Q Consensus 606 ~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 681 (841)
.+|+.|++.+.. +|...--..+|+|++|.+.+-... ...+. ....++++|.+|+++++++ +
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~---~~dF~-~lc~sFpNL~sLDIS~TnI-----------~ 186 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD---NDDFS-QLCASFPNLRSLDISGTNI-----------S 186 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec---chhHH-HHhhccCccceeecCCCCc-----------c
Confidence 566777766644 222222334677777777654422 12222 4455667777777766522 2
Q ss_pred cCCCCCCCcccceeEecc
Q 045150 682 SLQPLSHCQRLVDLRLTG 699 (841)
Q Consensus 682 ~l~~l~~~~~L~~L~L~~ 699 (841)
.+..++++++|+.|.+.+
T Consensus 187 nl~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 187 NLSGISRLKNLQVLSMRN 204 (699)
T ss_pred CcHHHhccccHHHHhccC
Confidence 333444555555555544
No 182
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.03 E-value=0.0029 Score=62.83 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=30.2
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV 229 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 229 (841)
.++|+|..|.|||||+..+.. .....|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 578999999999999999998 47788988887754
No 183
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.017 Score=62.00 Aligned_cols=231 Identities=18% Similarity=0.135 Sum_probs=119.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCL 269 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 269 (841)
....+.|+|..|.|||.|++++.+ ...........+.++. +....+++..+.. .-.+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s----e~f~~~~v~a~~~---------------~~~~~F 170 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS----EDFTNDFVKALRD---------------NEMEKF 170 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH----HHHHHHHHHHHHh---------------hhHHHH
Confidence 356899999999999999999999 5555555333333322 2333333333322 112334
Q ss_pred HHHccCceEEEEEecCCChh---hHH----HHHhhCCCCCCCcEEEEEecch---------HHhhcCCCcceeEecCCCC
Q 045150 270 YKSLQGKTYLMVLDDVWRKV---DWE----NLRRAFPDNKNGSRVIITTRNR---------EVAERSDEKTYVHKLRFLR 333 (841)
Q Consensus 270 ~~~L~~kr~LlVlDdv~~~~---~~~----~l~~~l~~~~~gs~ilvTtR~~---------~v~~~~~~~~~~~~l~~L~ 333 (841)
++.. .-=++++||++-.. .|+ .+...+.. .|-.||+|++.. .+.+..... -++++.+.+
T Consensus 171 k~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~G-l~~~I~~Pd 245 (408)
T COG0593 171 KEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWG-LVVEIEPPD 245 (408)
T ss_pred HHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhce-eEEeeCCCC
Confidence 4444 33388999996432 222 12222222 233799998642 233333333 789999999
Q ss_pred hhHHHHHHHhHhcCCCCC-C-chhHHHHHHHHHHcCCCchHHHHHhhhh--cC-C-ChhhHHHHHHhhcCCCCCcccChh
Q 045150 334 GDESWLLFCEKAFRGTNR-E-KGLEKLGREMVEKCDGLPLAIVVLGGLL--ST-K-TPQEWRLCFLYLSLFPEDFEINVE 407 (841)
Q Consensus 334 ~~~~~~lf~~~~~~~~~~-~-~~~~~~~~~i~~~c~glPlai~~~~~~L--~~-~-~~~~w~~cf~~~~~fp~~~~i~~~ 407 (841)
.+.....+.+++...... + ....-++..+-+-..-+.-|+..+..+- .. . +...-+.++...-.-++ - |+.+
T Consensus 246 ~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~-~-itie 323 (408)
T COG0593 246 DETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGE-K-ITIE 323 (408)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcccc-c-CCHH
Confidence 999999998877544332 2 2222223322222222222332222111 11 1 33333344444333233 2 4444
Q ss_pred HHHHHHHHcCCcC----------CCCCCCHHHHHHhHHHHHHHhhccccccc
Q 045150 408 KLIRLFVAEGFVP----------QSEDRTMEEVAKDNFDELINRSLIQAEER 449 (841)
Q Consensus 408 ~li~~w~aeg~i~----------~~~~~~~e~~~~~~~~~L~~~~ll~~~~~ 449 (841)
.+ ..-+|+-|-- ....-.+.++|....++|.++|+.++...
T Consensus 324 ~I-~~~Va~~y~v~~~dl~s~~R~~~i~~~RqiamyL~r~lt~~Slp~IG~~ 374 (408)
T COG0593 324 DI-QKIVAEYYNVKVSDLLSKSRTRNIVRPRQIAMYLARELTNLSLPEIGKA 374 (408)
T ss_pred HH-HHHHHHHhCCCHHHhhccccccccchHHHHHHHHHHHHccCcHHHHHHH
Confidence 33 3344444321 11123456677777788888888877543
No 184
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0076 Score=65.90 Aligned_cols=95 Identities=17% Similarity=0.260 Sum_probs=63.6
Q ss_pred CCCcccCCChHHHHHHHhcCCC---------CCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDE---------PRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
.++=|.+....++.+++..-.. ...+-|.++|++|.|||.||++++++ ..-.| +.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecch-----
Confidence 4567888888888887754211 23567899999999999999999994 33223 333321
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCC
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWR 287 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 287 (841)
+|+.. +...+++.+.+...+.-..-++++++|+++.
T Consensus 258 ---eivSG-----------vSGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSG-----------VSGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcc-----------cCcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 12222 2223445666666666678899999999975
No 185
>PRK08181 transposase; Validated
Probab=96.96 E-value=0.0017 Score=66.43 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=26.0
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEE
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVS 228 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 228 (841)
-+.++|.+|+|||.||..+.+ ........+.|++
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~ 141 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR 141 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee
Confidence 589999999999999999988 3333334456665
No 186
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.038 Score=58.10 Aligned_cols=94 Identities=9% Similarity=0.038 Sum_probs=63.5
Q ss_pred cCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-HHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCC
Q 045150 274 QGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNR-EVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTN 350 (841)
Q Consensus 274 ~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 350 (841)
.+++-.+|+|+++.. .....+...+-....++.+|++|.+. .+..........+.+.++++++..+.+......
T Consensus 105 ~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~--- 181 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSA--- 181 (325)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhcc---
Confidence 466778899999864 45667777776656667777666654 444443333478999999999999888765411
Q ss_pred CCchhHHHHHHHHHHcCCCchHHH
Q 045150 351 REKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 351 ~~~~~~~~~~~i~~~c~glPlai~ 374 (841)
. ...+...+..++|.|+.+.
T Consensus 182 -~---~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 182 -E---ISEILTALRINYGRPLLAL 201 (325)
T ss_pred -C---hHHHHHHHHHcCCCHHHHH
Confidence 1 1124567788999996443
No 187
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.91 E-value=0.0055 Score=57.88 Aligned_cols=133 Identities=15% Similarity=0.206 Sum_probs=71.6
Q ss_pred CChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCc---ccc---------------CCCCcEEEEEeCCccCH
Q 045150 174 DDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSS---DVK---------------NKFECCAWVSVSQDYQF 235 (841)
Q Consensus 174 ~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~---------------~~F~~~~wv~vs~~~~~ 235 (841)
+..+.+.+.+..+. -...+.++|..|+||+|+|..+.+.- ... ....-..|+.-....
T Consensus 4 ~~~~~L~~~~~~~~--l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~-- 79 (162)
T PF13177_consen 4 EIIELLKNLIKSGR--LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK-- 79 (162)
T ss_dssp HHHHHHHHHHHCTC----SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS--
T ss_pred HHHHHHHHHHHcCC--cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc--
Confidence 33455555555443 23468899999999999999887631 111 123334444322210
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHc-----cCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEE
Q 045150 236 QYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSL-----QGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVI 308 (841)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il 308 (841)
.....++.. .+.+.+ .+++=.+|+||++.. +....+...+-....++++|
T Consensus 80 ----------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 80 ----------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp ----------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred ----------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 011223333 333332 245678999999864 56777777776666688888
Q ss_pred EEecchH-HhhcCCCcceeEecCCCC
Q 045150 309 ITTRNRE-VAERSDEKTYVHKLRFLR 333 (841)
Q Consensus 309 vTtR~~~-v~~~~~~~~~~~~l~~L~ 333 (841)
++|++.. +..........+.+.++|
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8887654 333222223566666654
No 188
>PHA00729 NTP-binding motif containing protein
Probab=96.88 E-value=0.0073 Score=59.34 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+...|.|.|.+|+||||||..+.+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999988
No 189
>PRK06526 transposase; Provisional
Probab=96.87 E-value=0.0012 Score=67.07 Aligned_cols=23 Identities=35% Similarity=0.274 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.-+.++|++|+|||+||..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 45899999999999999999874
No 190
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.85 E-value=0.0043 Score=70.42 Aligned_cols=174 Identities=13% Similarity=0.108 Sum_probs=91.0
Q ss_pred CCCcccCCChHHHHHHHh---cC------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 167 ENPVGFEDDTDVLLSKLL---AG------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~---~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
++++|.++.++++.+++. .. .....+-+.++|++|.|||++|+.+++. .... ++.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH----HH
Confidence 357787777666555433 11 1112345889999999999999999984 2222 233221 11
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh------------hhHHH----HHhhCCC-
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK------------VDWEN----LRRAFPD- 300 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~------------~~~~~----l~~~l~~- 300 (841)
+. ..... .....+...+.......+.+|+||+++.. ..+.. +...+..
T Consensus 124 ~~----~~~~g-----------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~ 188 (495)
T TIGR01241 124 FV----EMFVG-----------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 188 (495)
T ss_pred HH----HHHhc-----------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc
Confidence 11 11000 11133334444444566789999999542 11122 2222221
Q ss_pred -CCCCcEEEEEecchH-HhhcC---CCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCC
Q 045150 301 -NKNGSRVIITTRNRE-VAERS---DEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGL 369 (841)
Q Consensus 301 -~~~gs~ilvTtR~~~-v~~~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~gl 369 (841)
...+-.||.||.... +.... +.-...+.++..+.++..++|..+.-..... + ......+++.+.|.
T Consensus 189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~--~~~l~~la~~t~G~ 259 (495)
T TIGR01241 189 GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-P--DVDLKAVARRTPGF 259 (495)
T ss_pred cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-c--chhHHHHHHhCCCC
Confidence 223445566665433 21111 1112678899888888888888776432221 1 11234677777764
No 191
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.83 E-value=0.056 Score=64.84 Aligned_cols=54 Identities=24% Similarity=0.457 Sum_probs=39.3
Q ss_pred CCCCcccCCChHHHHHHHhcC---CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCC
Q 045150 166 EENPVGFEDDTDVLLSKLLAG---DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKF 221 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 221 (841)
..+++|.+..++++.+++... ......++.++|++|+|||++|+.+.+ .....|
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 345889988888888866421 111234799999999999999999998 344343
No 192
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.064 Score=56.29 Aligned_cols=92 Identities=9% Similarity=0.055 Sum_probs=63.4
Q ss_pred CceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc-hHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCC
Q 045150 275 GKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRN-REVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNR 351 (841)
Q Consensus 275 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 351 (841)
+++-.+|+|+++.. .....+...+-....++.+|++|.+ ..+..........+.+.++++++..+.+....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~------ 180 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG------ 180 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC------
Confidence 45668999999754 4667777777655556666665554 45554444444789999999999988886531
Q ss_pred CchhHHHHHHHHHHcCCCchHHHHH
Q 045150 352 EKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 352 ~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
.+ ....+++.++|.|+.+..+
T Consensus 181 ~~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 181 IT----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred Cc----hHHHHHHHcCCCHHHHHHH
Confidence 11 2356789999999977544
No 193
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.00014 Score=71.27 Aligned_cols=98 Identities=29% Similarity=0.377 Sum_probs=71.2
Q ss_pred ccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCCCCc
Q 045150 627 LVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTTLPK 706 (841)
Q Consensus 627 l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~p~ 706 (841)
+.+.++|+.++|..... ....+|+.|+.|.|+-|. ++.|..+..|.+|++|+|..|....-.
T Consensus 18 l~~vkKLNcwg~~L~DI-------sic~kMp~lEVLsLSvNk-----------IssL~pl~rCtrLkElYLRkN~I~sld 79 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-------SICEKMPLLEVLSLSVNK-----------ISSLAPLQRCTRLKELYLRKNCIESLD 79 (388)
T ss_pred HHHhhhhcccCCCccHH-------HHHHhcccceeEEeeccc-----------cccchhHHHHHHHHHHHHHhcccccHH
Confidence 55677888888874422 566789999999999883 346677888999999999876443222
Q ss_pred c---ccccCCCccEEEEEeccCCCCCh-----hhhhhcccCCeEE
Q 045150 707 D---MHVLLPNLECLSLKVVLPEENPM-----PALEMLSNLTILD 743 (841)
Q Consensus 707 ~---~~~l~~~L~~L~L~~~~l~~~~~-----~~l~~l~~L~~L~ 743 (841)
. +.. +|+|+.|.|..|...+... ..+.-||+|+.|+
T Consensus 80 EL~YLkn-lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 80 ELEYLKN-LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHhc-CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 2 234 4999999999887655443 3467899999886
No 194
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.0034 Score=62.30 Aligned_cols=174 Identities=21% Similarity=0.212 Sum_probs=96.8
Q ss_pred CCCcccCCChHHHHHHHhcC--CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAG--DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIK 244 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 244 (841)
.++||-+.-++++.-.+... ....+--+.++|++|.||||||.-+++ +....+. ++...-
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k----~tsGp~------------ 87 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLK----ITSGPA------------ 87 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeE----eccccc------------
Confidence 46899888888876666532 122566799999999999999999999 3433321 110000
Q ss_pred HhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChh--hHHHHHhhCC--------CCCCCcEE-------
Q 045150 245 SFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV--DWENLRRAFP--------DNKNGSRV------- 307 (841)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~--------~~~~gs~i------- 307 (841)
+. ...++...+.. |+.. =.+.+|.++... .-+-+-.++- ..++++|.
T Consensus 88 ------------le--K~gDlaaiLt~-Le~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 88 ------------LE--KPGDLAAILTN-LEEG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ------------cc--ChhhHHHHHhc-CCcC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 00 01222222222 2222 245567775431 1111111111 12233332
Q ss_pred ----EEEecchHHhhcCCCc-ceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHH
Q 045150 308 ----IITTRNREVAERSDEK-TYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 308 ----lvTtR~~~v~~~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
=.|||.-.+....... .-+..++.-+.+|-.+...+.+-.-. -.--.+-+.+|+++..|-|.-+..+
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHH
Confidence 2588865544332211 14677888899999888888773222 2223456789999999999755443
No 195
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.74 E-value=0.098 Score=63.44 Aligned_cols=122 Identities=15% Similarity=0.176 Sum_probs=68.3
Q ss_pred CCCCcccCCChHHHHHHHhcCC------CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHH
Q 045150 166 EENPVGFEDDTDVLLSKLLAGD------EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLL 239 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 239 (841)
...++|.+..++.+...+.... .....++.++|+.|+|||++|+.+... ....-...+.+.++.-.....+
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~- 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV- 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH-
Confidence 3568999999999999887521 112457889999999999999999972 3222233444554432221111
Q ss_pred HHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCC
Q 045150 240 LRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPD 300 (841)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~ 300 (841)
.+-++.+.. -........+...+++ ....+|+||++... +.+..+...+..
T Consensus 641 ---~~l~g~~~g----~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~ 693 (852)
T TIGR03346 641 ---ARLIGAPPG----YVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDD 693 (852)
T ss_pred ---HHhcCCCCC----ccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhc
Confidence 111121111 0111111233333332 23348999999754 567777766643
No 196
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.73 E-value=0.012 Score=67.33 Aligned_cols=49 Identities=20% Similarity=0.176 Sum_probs=39.3
Q ss_pred CCCCcccCCChHHHHHHHhcCCC--CCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 166 EENPVGFEDDTDVLLSKLLAGDE--PRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
-++++|-+..++++..++..... ...+++.|+|+.|.||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999889999988875321 13468999999999999999999973
No 197
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.052 Score=57.70 Aligned_cols=177 Identities=13% Similarity=0.140 Sum_probs=97.9
Q ss_pred ChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCC---Cc-----EEEEEeCCccCHHHHHHHHHHHh
Q 045150 175 DTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKF---EC-----CAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 175 ~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
..+++...+..+. -...+.+.|+.|+||+++|..+..----...- .| +-++.....+|...+.
T Consensus 10 ~~~~l~~~~~~~r--l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~------- 80 (334)
T PRK07993 10 DYEQLVGSYQAGR--GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT------- 80 (334)
T ss_pred HHHHHHHHHHcCC--cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe-------
Confidence 3455666665554 34578899999999999999877621000000 00 0011111111110000
Q ss_pred hhccccccCC-CCCCCHHHHHHHHHHH----ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc-hHHhh
Q 045150 247 NIISSAEEGG-LENKSEEDLERCLYKS----LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRN-REVAE 318 (841)
Q Consensus 247 ~~~~~~~~~~-~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~ 318 (841)
+.. -.....++..+..... ..+++-.+|+|+++.. ..-..+...+-....++.+|++|.+ ..+..
T Consensus 81 -------p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLp 153 (334)
T PRK07993 81 -------PEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLA 153 (334)
T ss_pred -------cccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChH
Confidence 000 0112234443322221 1467779999999754 4566677667655556666666655 44544
Q ss_pred cCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHH
Q 045150 319 RSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 319 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 374 (841)
......+.+.+.++++++..+.+.... + . + .+.+..++..++|.|..+.
T Consensus 154 TIrSRCq~~~~~~~~~~~~~~~L~~~~-~--~-~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 154 TLRSRCRLHYLAPPPEQYALTWLSREV-T--M-S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHHhccccccCCCCCHHHHHHHHHHcc-C--C-C---HHHHHHHHHHcCCCHHHHH
Confidence 333333678999999999888776532 1 1 1 2335678999999997554
No 198
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.71 E-value=0.0032 Score=66.44 Aligned_cols=106 Identities=15% Similarity=0.051 Sum_probs=63.8
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccC-CCCc-EEEEEeCCc-cCHHHHHHHHHHHhhhcccc
Q 045150 176 TDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKN-KFEC-CAWVSVSQD-YQFQYLLLRIIKSFNIISSA 252 (841)
Q Consensus 176 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~ 252 (841)
..++++.+..-.. + .-+.|+|..|+|||||++.+.+. +.. +-+. ++|+.+.+. -.+.++.+.+...+......
T Consensus 120 ~~RvID~l~PiGk-G-QR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 120 SMRVVDLVAPIGK-G-QRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hHhhhhheeecCC-C-ceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 4457777664322 1 35689999999999999999883 333 2244 467777664 45678888887766543221
Q ss_pred ccCCCCCCCHHHHHHHHHHHc--cCceEEEEEecCC
Q 045150 253 EEGGLENKSEEDLERCLYKSL--QGKTYLMVLDDVW 286 (841)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~ 286 (841)
.+. ............+.+++ ++++++||+|++.
T Consensus 196 e~~-~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 196 RPP-DEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 111 00011111222333344 6899999999994
No 199
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.69 E-value=0.0099 Score=59.36 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=82.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC-----ccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ-----DYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLE 266 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 266 (841)
.+++|||..|.||||+++.+.. ...--...+++.-.+ .....+-..++++..+........-....+..+.+
T Consensus 40 e~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 4899999999999999999997 333333444443211 12233445666666664332111111122334444
Q ss_pred H-HHHHHccCceEEEEEecCCChhh---HHHHHhhCCC--CCCCcEEEEEecchHHhhcCCCcceeEecCCC-ChhHHHH
Q 045150 267 R-CLYKSLQGKTYLMVLDDVWRKVD---WENLRRAFPD--NKNGSRVIITTRNREVAERSDEKTYVHKLRFL-RGDESWL 339 (841)
Q Consensus 267 ~-~l~~~L~~kr~LlVlDdv~~~~~---~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~~~~~~~~l~~L-~~~~~~~ 339 (841)
. .|.+.|.-+.-++|.|..-+.-+ =.++...+.+ ...|-..+..|.+-.+++.+.....+..+... ......+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~ 196 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEE 196 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHH
Confidence 3 56778888999999998754311 1223332221 22366688888888888876543333333332 2233444
Q ss_pred HH
Q 045150 340 LF 341 (841)
Q Consensus 340 lf 341 (841)
+|
T Consensus 197 ~~ 198 (268)
T COG4608 197 VF 198 (268)
T ss_pred Hh
Confidence 44
No 200
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.69 E-value=0.018 Score=53.91 Aligned_cols=126 Identities=21% Similarity=0.306 Sum_probs=73.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEE---------------------eCCcc-----------------
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVS---------------------VSQDY----------------- 233 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---------------------vs~~~----------------- 233 (841)
..+.|+|.+|.|||||.+.+|..++.. ...+|+. |-|++
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~ 105 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLR 105 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhh
Confidence 478999999999999999999853321 1233331 11111
Q ss_pred ----CHHHHHHHHHHHh---hhccccc--cCCCCCCCHHHHHHHHHHHccCceEEEEEec----CCChhhHHHHHhhCCC
Q 045150 234 ----QFQYLLLRIIKSF---NIISSAE--EGGLENKSEEDLERCLYKSLQGKTYLMVLDD----VWRKVDWENLRRAFPD 300 (841)
Q Consensus 234 ----~~~~~~~~i~~~l---~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDd----v~~~~~~~~l~~~l~~ 300 (841)
...++-+...+.+ +...... |..++ ..++-...|.+.+-+++-+|+-|. ++....|+-+.-.-.-
T Consensus 106 v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LS--GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 106 VIGKPPREIRRRVSEVLDLVGLKHKARALPSQLS--GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred ccCCCHHHHHHHHHHHHHHhccchhhhcCccccC--chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 2333333333333 3222111 22221 123444566777778888888885 4444556654333333
Q ss_pred CCCCcEEEEEecchHHhhcCCC
Q 045150 301 NKNGSRVIITTRNREVAERSDE 322 (841)
Q Consensus 301 ~~~gs~ilvTtR~~~v~~~~~~ 322 (841)
+..|..||++|.+..+...+..
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred hhcCcEEEEEeccHHHHHhccC
Confidence 5568999999999998777654
No 201
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.68 E-value=0.09 Score=56.34 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=44.4
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCC---CCcEE----EEEeCCccCHHHHHHHHHHHhhh
Q 045150 176 TDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNK---FECCA----WVSVSQDYQFQYLLLRIIKSFNI 248 (841)
Q Consensus 176 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~----wv~vs~~~~~~~~~~~i~~~l~~ 248 (841)
.+.+.+.+...+.....+|+|.|.=|+||||+.+.+.+. .+.. --.++ |-....+.-...++..|..++..
T Consensus 5 a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~--L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~~ 82 (325)
T PF07693_consen 5 AKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE--LKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLEK 82 (325)
T ss_pred HHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH--HhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHHH
Confidence 456666676654336789999999999999999999883 3333 11233 33333222245556666666553
No 202
>PRK09183 transposase/IS protein; Provisional
Probab=96.67 E-value=0.0035 Score=64.17 Aligned_cols=22 Identities=41% Similarity=0.418 Sum_probs=19.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+.|+|..|+|||+||..+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 3577999999999999999976
No 203
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.63 E-value=0.0092 Score=70.99 Aligned_cols=118 Identities=15% Similarity=0.149 Sum_probs=66.2
Q ss_pred CCCCcccCCChHHHHHHHhcC------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHH
Q 045150 166 EENPVGFEDDTDVLLSKLLAG------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLL 239 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 239 (841)
...++|-+..++.+...+... ......++.++|+.|+|||+||+.++. .. +...+.++.++-....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~~~~--- 524 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYMEKH--- 524 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhhhcc---
Confidence 346788888888888877632 111245789999999999999999988 33 2334555554422111
Q ss_pred HHHHHHhhhccccccCCCCCCCHHHHHHHHHHHcc-CceEEEEEecCCCh--hhHHHHHhhCCC
Q 045150 240 LRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQ-GKTYLMVLDDVWRK--VDWENLRRAFPD 300 (841)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~--~~~~~l~~~l~~ 300 (841)
.+..-++..... ........ +.+.++ ...-+++||+++.. +.++.+...+..
T Consensus 525 -~~~~lig~~~gy----vg~~~~~~----l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 525 -TVSRLIGAPPGY----VGFEQGGL----LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -cHHHHhcCCCCC----cccchhhH----HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 111112221110 11111122 333333 33459999999853 456666665543
No 204
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.62 E-value=0.13 Score=50.70 Aligned_cols=181 Identities=19% Similarity=0.207 Sum_probs=103.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe-CCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV-SQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERC 268 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (841)
+-.++.++|.-|.|||++++..... .-+ +.++=|.+ .+..+...+...|..++...+.. ....-..+....
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~----~~~~~~e~~~~~ 121 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKV----NVNAVLEQIDRE 121 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccc----hhHHHHHHHHHH
Confidence 3468999999999999999955432 111 11222333 34566778888888888763211 111112333334
Q ss_pred HHHHc-cCce-EEEEEecCCCh--hhHHHHHhhCC---CCCCCcEEEEEecch-------HHhhcCCCccee-EecCCCC
Q 045150 269 LYKSL-QGKT-YLMVLDDVWRK--VDWENLRRAFP---DNKNGSRVIITTRNR-------EVAERSDEKTYV-HKLRFLR 333 (841)
Q Consensus 269 l~~~L-~~kr-~LlVlDdv~~~--~~~~~l~~~l~---~~~~gs~ilvTtR~~-------~v~~~~~~~~~~-~~l~~L~ 333 (841)
+.+.. +++| ..+++||.... +..+.++-... +...--+|+..-..+ .+.........+ |++.|++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 44444 6788 99999999754 33444433322 111112233322211 111111122234 9999999
Q ss_pred hhHHHHHHHhHhcCCCCCCchh-HHHHHHHHHHcCCCchHHHHHhh
Q 045150 334 GDESWLLFCEKAFRGTNREKGL-EKLGREMVEKCDGLPLAIVVLGG 378 (841)
Q Consensus 334 ~~~~~~lf~~~~~~~~~~~~~~-~~~~~~i~~~c~glPlai~~~~~ 378 (841)
.++...++..+.-+...+.+-+ .+....|.....|.|.+|..++.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999888888776554433322 33456788889999999987663
No 205
>PRK12377 putative replication protein; Provisional
Probab=96.61 E-value=0.0058 Score=61.71 Aligned_cols=36 Identities=25% Similarity=0.211 Sum_probs=28.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV 229 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 229 (841)
..+.++|..|+|||+||..+.+ ........++++++
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~ 137 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTV 137 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEH
Confidence 4789999999999999999999 44444445677764
No 206
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.61 E-value=0.0097 Score=60.45 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=39.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccC----CCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKN----KFECCAWVSVSQDYQFQYLLLRIIKSFN 247 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 247 (841)
.-.++.|+|.+|.|||+||.+++....... .-..++|++....++..++ .++++..+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~ 78 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFG 78 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhc
Confidence 447999999999999999999975322222 1367999998887776544 34444443
No 207
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.61 E-value=0.0018 Score=62.14 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=25.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEE
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVS 228 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 228 (841)
.-+.++|..|+|||.||..+.+. .+...+ .+.|++
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~-~~~~g~-~v~f~~ 82 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE-AIRKGY-SVLFIT 82 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH-HHHTT---EEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH-hccCCc-ceeEee
Confidence 46899999999999999999984 223333 466776
No 208
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.59 E-value=0.004 Score=63.20 Aligned_cols=94 Identities=18% Similarity=0.294 Sum_probs=54.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCC-cEEEEEeCCccCH-HHHHHHHHHHhhhccccc-cCCCCCCCH-----H
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFE-CCAWVSVSQDYQF-QYLLLRIIKSFNIISSAE-EGGLENKSE-----E 263 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~~~~~i~~~l~~~~~~~-~~~~~~~~~-----~ 263 (841)
+-++|.|..|.||||||+.+++ .++.+|+ .++++-+.+.... .++.+++...=......- ....+.... .
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3589999999999999999998 5655564 4666667665443 444444433210000000 000000001 1
Q ss_pred HHHHHHHHHc--c-CceEEEEEecCCC
Q 045150 264 DLERCLYKSL--Q-GKTYLMVLDDVWR 287 (841)
Q Consensus 264 ~~~~~l~~~L--~-~kr~LlVlDdv~~ 287 (841)
...-.+.+++ + ++.+|+++||+-.
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 2223456676 4 8999999999943
No 209
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.54 E-value=0.0091 Score=59.36 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=36.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLL 240 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 240 (841)
.-+++.|+|.+|+|||++|.++... ....-..++|++... ++..++.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 4579999999999999999998873 333456799999865 66655443
No 210
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.50 E-value=0.011 Score=59.61 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=35.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYL 238 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 238 (841)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 4579999999999999999999873 33344678999876 5555443
No 211
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.49 E-value=0.018 Score=54.51 Aligned_cols=40 Identities=30% Similarity=0.462 Sum_probs=29.9
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccC
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQ 234 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 234 (841)
++.|+|.+|+||||+|..+... ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999999873 333445677887765543
No 212
>PRK06921 hypothetical protein; Provisional
Probab=96.48 E-value=0.01 Score=60.93 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=28.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCC-CCcEEEEEe
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNK-FECCAWVSV 229 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~v 229 (841)
...+.++|..|+|||.||..+++. +..+ -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 356899999999999999999984 4333 344667764
No 213
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.48 E-value=0.0068 Score=60.53 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH-HHhhcCChhHHHHHHHHHHHhhhHHHHHhhhhc
Q 045150 4 AVVSFVVQRLGDYLIQEAKTLGGVRDEVESLKKELEWMQCFVKDA-EAKQAGNDLIRQWVSDIRDIAYDAEDVLDKYML 81 (841)
Q Consensus 4 ~~v~~~~~kl~~~l~~e~~~~~~v~~~~~~l~~~l~~i~~~l~~~-~~~~~~~~~~~~wl~~lr~~~yd~eD~ld~~~~ 81 (841)
+-|..++++|-.+.......+.-++.+++-++.|++.+|.||+.. +..+...+....+..++-+.||++|.++|.+..
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi~ 374 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACIS 374 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhhc
Confidence 567889999999888888888889999999999999999999987 443444445889999999999999999998753
No 214
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.46 E-value=0.072 Score=54.87 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHH
Q 045150 177 DVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLL 239 (841)
Q Consensus 177 ~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 239 (841)
+++..++..+. -|.+.|.+|+|||++|+.+.+ .... ....++++...+..+++
T Consensus 12 ~~~l~~l~~g~-----~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 12 SRALRYLKSGY-----PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHhcCC-----eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 34444444432 466899999999999999987 3322 24556666655555544
No 215
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.45 E-value=0.0076 Score=61.37 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=27.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV 229 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 229 (841)
.-+.++|.+|+|||.||.++.+. +...=-.+.++++
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~ 141 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA 141 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH
Confidence 45889999999999999999995 4432234666653
No 216
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.45 E-value=0.033 Score=59.72 Aligned_cols=144 Identities=15% Similarity=0.165 Sum_probs=80.9
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccC-------------------CCCcEEEEE
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKN-------------------KFECCAWVS 228 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~ 228 (841)
.++|-+....++..+...... ....+.++|+.|+||||+|..+.+.-.-.. ..+.+..+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~-~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR-LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC-CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 356677777777777774432 233589999999999999999987411000 112344444
Q ss_pred eCCccC---HHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCCCC
Q 045150 229 VSQDYQ---FQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKN 303 (841)
Q Consensus 229 vs~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~ 303 (841)
-+.... ..+..+++.+...... ..++.-++++|+++.. +.-..+...+.....
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~----------------------~~~~~kviiidead~mt~~A~nallk~lEep~~ 138 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESP----------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPK 138 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCC----------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCC
Confidence 333322 1222222222221110 0356789999999865 334455555555555
Q ss_pred CcEEEEEecc-hHHhhcCCCcceeEecCCCCh
Q 045150 304 GSRVIITTRN-REVAERSDEKTYVHKLRFLRG 334 (841)
Q Consensus 304 gs~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~ 334 (841)
.+.+|++|.. ..+..........+.+.+.+.
T Consensus 139 ~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 139 NTRFILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred CeEEEEEcCChhhccchhhhcceeeecCCchH
Confidence 6777777763 344443333346677776333
No 217
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.44 E-value=0.14 Score=54.44 Aligned_cols=93 Identities=11% Similarity=0.165 Sum_probs=62.0
Q ss_pred cCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc-hHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCC
Q 045150 274 QGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRN-REVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTN 350 (841)
Q Consensus 274 ~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 350 (841)
.+++-++|+|+++.. ..+..+...+-....++.+|++|.+ ..+..........+.+.+++.++..+.+.... .
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~ 205 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V 205 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C
Confidence 355668899999854 5677777777766666765555544 55544433334789999999999998887641 1
Q ss_pred CCchhHHHHHHHHHHcCCCchHHHHH
Q 045150 351 REKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 351 ~~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
. . ...++..++|.|..+..+
T Consensus 206 -~-~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -A-D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -C-h----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999766543
No 218
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.42 E-value=0.011 Score=71.05 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=37.9
Q ss_pred CCCCcccCCChHHHHHHHhcC------CCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 166 EENPVGFEDDTDVLLSKLLAG------DEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...++|-+..++.+.+.+... ......++.++|+.|+|||.||+.+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999998887531 122345889999999999999998876
No 219
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.42 E-value=0.024 Score=54.15 Aligned_cols=118 Identities=20% Similarity=0.246 Sum_probs=61.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCc-c--ccCC---CC--cEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSS-D--VKNK---FE--CCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEE 263 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~-~--~~~~---F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 263 (841)
.+++|+|..|+|||||.+.+..+. . +... |. .+.|+ .+ .+.+..++.............+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 489999999999999999986421 1 1111 11 13333 22 345666654321001111222222
Q ss_pred H-HHHHHHHHccCc--eEEEEEecCCC---hhhHHHHHhhCCC-CCCCcEEEEEecchHHhhc
Q 045150 264 D-LERCLYKSLQGK--TYLMVLDDVWR---KVDWENLRRAFPD-NKNGSRVIITTRNREVAER 319 (841)
Q Consensus 264 ~-~~~~l~~~L~~k--r~LlVlDdv~~---~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~ 319 (841)
+ -.-.+.+.+-.+ .=++++|..-. ....+.+...+.. ...|..||++|.+......
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~ 154 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS 154 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 2 223344555455 66888898743 2333333333332 1246678889988776653
No 220
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.41 E-value=0.0022 Score=57.44 Aligned_cols=21 Identities=57% Similarity=0.661 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
||.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 221
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.40 E-value=0.013 Score=69.63 Aligned_cols=162 Identities=15% Similarity=0.175 Sum_probs=86.3
Q ss_pred CCCCcccCCChHHHHHHHhcC---CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHH
Q 045150 166 EENPVGFEDDTDVLLSKLLAG---DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRI 242 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 242 (841)
+.+.+|.+..+++|+++|... ....-.++.++|++|+||||+|+.+.. .....|-. +..+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~~---i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYVR---MALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEEE---EEcCCCCCHHHhccch
Confidence 456889999999999888731 111335799999999999999999997 33333322 2333322322221110
Q ss_pred HHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChhh------HHHHHhhCCCC---------------
Q 045150 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKVD------WENLRRAFPDN--------------- 301 (841)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~------~~~l~~~l~~~--------------- 301 (841)
+.. ...+ ...+...+.+. ....-+++||.++.... .+.+...+...
T Consensus 396 -~~~----------~g~~-~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~d 462 (784)
T PRK10787 396 -RTY----------IGSM-PGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYD 462 (784)
T ss_pred -hcc----------CCCC-CcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEeccccccccc
Confidence 000 0011 12233333322 22344788999964321 23343333211
Q ss_pred CCCcEEEEEecchHHhhcCCCcceeEecCCCChhHHHHHHHhHh
Q 045150 302 KNGSRVIITTRNREVAERSDEKTYVHKLRFLRGDESWLLFCEKA 345 (841)
Q Consensus 302 ~~gs~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (841)
-...-+|.|+....+....-....++++.++++++-.++..++.
T Consensus 463 ls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 463 LSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 12233444554333222222222678899999988888777665
No 222
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.39 E-value=0.047 Score=53.70 Aligned_cols=127 Identities=15% Similarity=0.198 Sum_probs=70.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEE----------------------eCCccC---------------
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVS----------------------VSQDYQ--------------- 234 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----------------------vs~~~~--------------- 234 (841)
..++|+|+.|+|||||...+.--.+ .-...+++. |.|.|+
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl 108 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPL 108 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHH
Confidence 3899999999999999999875211 111122221 112221
Q ss_pred ---------HHHHHHHHHHHhhhccccccCCCCCCCH-HHHHHHHHHHccCceEEEEEecCCC---hhhHHHHHhhCCC-
Q 045150 235 ---------FQYLLLRIIKSFNIISSAEEGGLENKSE-EDLERCLYKSLQGKTYLMVLDDVWR---KVDWENLRRAFPD- 300 (841)
Q Consensus 235 ---------~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~- 300 (841)
..+....+++.++.............+. ++-...|.+.|-.++-+|+-|.--. ...-+.+...+..
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~ 188 (226)
T COG1136 109 LIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL 188 (226)
T ss_pred HHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHH
Confidence 1233445555545431111011122333 3334467778888888888887521 1222333333332
Q ss_pred -CCCCcEEEEEecchHHhhcCC
Q 045150 301 -NKNGSRVIITTRNREVAERSD 321 (841)
Q Consensus 301 -~~~gs~ilvTtR~~~v~~~~~ 321 (841)
...|..||+.|.+..+|..+.
T Consensus 189 ~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 189 NKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHhcCCEEEEEcCCHHHHHhCC
Confidence 234778999999999999765
No 223
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.38 E-value=0.026 Score=54.58 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=64.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEE---eCCccCHHHHH------HHHHHHhhhccccccCCCCCCCH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVS---VSQDYQFQYLL------LRIIKSFNIISSAEEGGLENKSE 262 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~------~~i~~~l~~~~~~~~~~~~~~~~ 262 (841)
.+++|+|..|.|||||++.++.. .......+++. +. ..+..... .++++.++..... .......+.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~-~~~~~~LS~ 100 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLA-DRPFNELSG 100 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHh-cCCcccCCH
Confidence 48999999999999999999873 22334444442 21 11222211 1234444432111 011122222
Q ss_pred HH-HHHHHHHHccCceEEEEEecCCC---hhhHHHHHhhCCCC-CC-CcEEEEEecchHHh
Q 045150 263 ED-LERCLYKSLQGKTYLMVLDDVWR---KVDWENLRRAFPDN-KN-GSRVIITTRNREVA 317 (841)
Q Consensus 263 ~~-~~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~ 317 (841)
.+ -.-.+.+.+-..+-++++|+.-. ....+.+...+... .. |..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22 23345566666778899998743 23333444433321 12 56788888876654
No 224
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.09 Score=54.34 Aligned_cols=172 Identities=13% Similarity=0.169 Sum_probs=97.4
Q ss_pred CCcccCCChHHHHHHHhc---CC-------CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 168 NPVGFEDDTDVLLSKLLA---GD-------EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~---~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
++=|.++.+++|.+...- .+ -..++-|.++|++|.|||-||++|++ +....| +.|..+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS----- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS----- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH-----
Confidence 455678777777766532 11 13457789999999999999999999 455444 333221
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHcc-CceEEEEEecCCChh----------------hHHHHHhhCCC
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQ-GKTYLMVLDDVWRKV----------------DWENLRRAFPD 300 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~----------------~~~~l~~~l~~ 300 (841)
++....-+. ...+...+.+.-+ ..+..|.+|.++... ..-++...+..
T Consensus 220 ---ElVqKYiGE------------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 220 ---ELVQKYIGE------------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred ---HHHHHHhcc------------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 111111110 1345555555554 467899999886421 12233333432
Q ss_pred C--CCCcEEEEEecchHHhhcC----CCcceeEecCCCChhHHHHHHHhHhcCCCCC-CchhHHHHHHHHHHcCCCc
Q 045150 301 N--KNGSRVIITTRNREVAERS----DEKTYVHKLRFLRGDESWLLFCEKAFRGTNR-EKGLEKLGREMVEKCDGLP 370 (841)
Q Consensus 301 ~--~~gs~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~c~glP 370 (841)
. ...-|||..|...++...+ +.-...++++.-+.+--.++|+-|+-+-... .-++ +.+++.|.|.-
T Consensus 285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~s 357 (406)
T COG1222 285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFS 357 (406)
T ss_pred CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCc
Confidence 2 2345888877655544322 1122678888666666667777776443322 2222 34566666654
No 225
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.35 E-value=0.02 Score=68.42 Aligned_cols=174 Identities=14% Similarity=0.131 Sum_probs=90.1
Q ss_pred CCcccCCChHHHHHHHhcC----------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 168 NPVGFEDDTDVLLSKLLAG----------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
++.|.+..++++.+.+... .-...+.+.++|.+|.|||+||+.+++. ....| +.++.+.
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~~------ 247 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGPE------ 247 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecHH------
Confidence 4778998888887776321 0023456889999999999999999983 33222 2222111
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh-------------hhHHHHHhhCCCC-CC
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK-------------VDWENLRRAFPDN-KN 303 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-------------~~~~~l~~~l~~~-~~ 303 (841)
+ ..... ......+...+.........+|++|+++.. .....+...+... ..
T Consensus 248 i----~~~~~-----------g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 248 I----MSKYY-----------GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred H----hcccc-----------cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC
Confidence 1 00000 001122333333334556789999998542 0122333333321 22
Q ss_pred CcEEEE-EecchH-HhhcC---CCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 045150 304 GSRVII-TTRNRE-VAERS---DEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLP 370 (841)
Q Consensus 304 gs~ilv-TtR~~~-v~~~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glP 370 (841)
+..++| ||.... +.... +.-...+.+...+.++..+++..+.-...... ......+++.+.|.-
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 333444 444322 21111 11125677888888888888875542211111 112355667777654
No 226
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.056 Score=60.22 Aligned_cols=144 Identities=19% Similarity=0.196 Sum_probs=75.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCL 269 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 269 (841)
..+-|..+|++|.|||++|+.+.+ .-+..| +.|+.. +++....+ .++..+.+..
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp--------EL~sk~vG-----------eSEr~ir~iF 520 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP--------ELFSKYVG-----------ESERAIREVF 520 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH--------HHHHHhcC-----------chHHHHHHHH
Confidence 467889999999999999999999 444444 333221 11111111 1122233333
Q ss_pred HHHccCceEEEEEecCCChh-------------hHHHHHhhCCCCCCCcEEEE---EecchHHhhcC---CCcceeEecC
Q 045150 270 YKSLQGKTYLMVLDDVWRKV-------------DWENLRRAFPDNKNGSRVII---TTRNREVAERS---DEKTYVHKLR 330 (841)
Q Consensus 270 ~~~L~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~~~~gs~ilv---TtR~~~v~~~~---~~~~~~~~l~ 330 (841)
++.=+--..+|.||.++... ...++...+........|+| |-|...+...+ +.-...+.++
T Consensus 521 ~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVp 600 (693)
T KOG0730|consen 521 RKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVP 600 (693)
T ss_pred HHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeec
Confidence 33334455788888876421 13334444443222223333 44444333322 1122677777
Q ss_pred CCChhHHHHHHHhHhcCCCCCCc-hhHHHH
Q 045150 331 FLRGDESWLLFCEKAFRGTNREK-GLEKLG 359 (841)
Q Consensus 331 ~L~~~~~~~lf~~~~~~~~~~~~-~~~~~~ 359 (841)
+-+.+-..++|+.++-+-.-.+. ++.+++
T Consensus 601 lPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 601 LPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred CccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 77777778889888855444322 344443
No 227
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.30 E-value=0.01 Score=62.25 Aligned_cols=98 Identities=13% Similarity=0.204 Sum_probs=55.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLY 270 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 270 (841)
..-+.++|..|+|||.||..+++. ....-..+.+++++ .++.++...... ......+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~~--------------~~~~~~l~ 213 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSISD--------------GSVKEKID 213 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHhc--------------CcHHHHHH
Confidence 357899999999999999999994 33322335666643 344444333321 01112222
Q ss_pred HHccCceEEEEEecCCCh--hhHHH--HHhhC-CCC-CCCcEEEEEec
Q 045150 271 KSLQGKTYLMVLDDVWRK--VDWEN--LRRAF-PDN-KNGSRVIITTR 312 (841)
Q Consensus 271 ~~L~~kr~LlVlDdv~~~--~~~~~--l~~~l-~~~-~~gs~ilvTtR 312 (841)
. + .+-=||||||+..+ ..|.. +...+ ... ..+-.+|+||-
T Consensus 214 ~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 214 A-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred H-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 2 2 23458999999643 45643 43332 211 22344777774
No 228
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.30 E-value=0.018 Score=57.64 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=32.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQ 234 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 234 (841)
.-.++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 4579999999999999999999873 333334678887655543
No 229
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.033 Score=62.62 Aligned_cols=162 Identities=18% Similarity=0.192 Sum_probs=88.9
Q ss_pred CCCCcccCCChHHHHHHHhcCC---CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHH
Q 045150 166 EENPVGFEDDTDVLLSKLLAGD---EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRI 242 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 242 (841)
+.+-+|.++.+++|++.|.-.. ...-.++++||++|+|||.|++.+++ .....|-. ++++.--|..+|
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEI---- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEI---- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHh----
Confidence 4567899999999999986321 11236999999999999999999998 56666622 233322222221
Q ss_pred HHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChh------hHHHHHhhCCC-CCC------------
Q 045150 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV------DWENLRRAFPD-NKN------------ 303 (841)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------~~~~l~~~l~~-~~~------------ 303 (841)
.+.... =+.+|. ..+...+++ .+.+.-+++||.++... --..+...|.. +.+
T Consensus 393 ----RGHRRT---YIGamP-GrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yD 463 (782)
T COG0466 393 ----RGHRRT---YIGAMP-GKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYD 463 (782)
T ss_pred ----cccccc---ccccCC-hHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccc
Confidence 111100 011221 222222222 25677899999997541 11122222211 000
Q ss_pred CcEE-EEEecch-H-HhhcCCCcceeEecCCCChhHHHHHHHhHh
Q 045150 304 GSRV-IITTRNR-E-VAERSDEKTYVHKLRFLRGDESWLLFCEKA 345 (841)
Q Consensus 304 gs~i-lvTtR~~-~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (841)
=|.| .|||-+. + +....-....++++.+-+++|-.+.-+++.
T Consensus 464 LS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 464 LSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 1344 3455432 1 222111122789999999998877776665
No 230
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.30 E-value=0.029 Score=56.57 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=54.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCC------CcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCC---CCC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKF------ECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGL---ENK 260 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~~ 260 (841)
.-.++.|+|.+|.|||+||..++.. ....- ..++|++....++...+. .++.............+ ...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 4469999999999999999999763 22223 568899987777765543 33443322110000000 112
Q ss_pred CHHHHHHHHHHHcc----CceEEEEEecCC
Q 045150 261 SEEDLERCLYKSLQ----GKTYLMVLDDVW 286 (841)
Q Consensus 261 ~~~~~~~~l~~~L~----~kr~LlVlDdv~ 286 (841)
+.+++...+.+..+ .+.-|+|+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 33455555554432 344588888874
No 231
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.034 Score=62.21 Aligned_cols=105 Identities=22% Similarity=0.327 Sum_probs=65.2
Q ss_pred CCCCcccCCChHHHHHHHhcCC---CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHH
Q 045150 166 EENPVGFEDDTDVLLSKLLAGD---EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRI 242 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 242 (841)
+++-+|+++-+++|.+++.-.. ..+-.+++.+|++|+|||.+|+.|+. .....| +-++|+.-.|..+|-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIk--- 481 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIK--- 481 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhc---
Confidence 4567899999999999986431 12447999999999999999999998 454444 223444444443321
Q ss_pred HHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh
Q 045150 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK 288 (841)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~ 288 (841)
+.... =+..| ...+++.+++ .+..+-|+.+|.|+..
T Consensus 482 -----GHRRT---YVGAM-PGkiIq~LK~-v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 482 -----GHRRT---YVGAM-PGKIIQCLKK-VKTENPLILIDEVDKL 517 (906)
T ss_pred -----cccee---eeccC-ChHHHHHHHh-hCCCCceEEeehhhhh
Confidence 11100 01112 1334444433 2556778999999753
No 232
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.26 E-value=0.00075 Score=59.15 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=60.4
Q ss_pred CCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcc
Q 045150 481 NSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSS 560 (841)
Q Consensus 481 ~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~ 560 (841)
..++..+.+.+|... +++.++-.+++.++.|+|++|. +. .+|..+..++.||.|+++.| .+...|..
T Consensus 52 ~~el~~i~ls~N~fk----~fp~kft~kf~t~t~lNl~~ne------is--dvPeE~Aam~aLr~lNl~~N-~l~~~p~v 118 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK----KFPKKFTIKFPTATTLNLANNE------IS--DVPEELAAMPALRSLNLRFN-PLNAEPRV 118 (177)
T ss_pred CceEEEEecccchhh----hCCHHHhhccchhhhhhcchhh------hh--hchHHHhhhHHhhhcccccC-ccccchHH
Confidence 344556666666553 2445555667777777887777 76 67777777778888888777 66777777
Q ss_pred cCCCCCCCeeecC-CcccccCcc
Q 045150 561 IFNLPGLQTLDLS-RCIVQLPPE 582 (841)
Q Consensus 561 i~~L~~L~~L~L~-~~~~~lp~~ 582 (841)
|..|.+|-+||.. +-...+|..
T Consensus 119 i~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 119 IAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred HHHHHhHHHhcCCCCccccCcHH
Confidence 7777777777777 455555544
No 233
>PRK06696 uridine kinase; Validated
Probab=96.26 E-value=0.0037 Score=62.73 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=33.0
Q ss_pred cCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 172 FEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
|.+-+++|.+.+.........+|+|.|.+|+||||||+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 445566777777653333678999999999999999999997
No 234
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.26 E-value=0.014 Score=61.89 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=43.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCcccc---C-CCCcEEEEEeCCccCHHHHHHHHHHHhhhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVK---N-KFECCAWVSVSQDYQFQYLLLRIIKSFNII 249 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 249 (841)
.-.++-|+|.+|+|||+|+..++-..... + .-..++||+....|+++++.+ +++.++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 45789999999999999999886422221 1 224689999999999888654 56666543
No 235
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.25 E-value=0.0036 Score=60.73 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=35.6
Q ss_pred cCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEE
Q 045150 172 FEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVS 228 (841)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 228 (841)
+..+....++.|... .++.+.|++|.|||.||-...-+.-..+.|+.++++.
T Consensus 5 ~~~~Q~~~~~al~~~-----~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALLNN-----DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHHH------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHHhC-----CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 444555666666632 3899999999999999999987644457888888875
No 236
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.23 E-value=0.043 Score=55.99 Aligned_cols=176 Identities=18% Similarity=0.070 Sum_probs=98.5
Q ss_pred CCCCCcccCCChHHHHHHHhcCCC-CCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCH-HHHHHHH
Q 045150 165 VEENPVGFEDDTDVLLSKLLAGDE-PRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQF-QYLLLRI 242 (841)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i 242 (841)
+...++|-.++..++..++...-. .+..-+.|+|+.|.|||+|...+..| .+..=+...-|........ +-.++.|
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHH
Confidence 345688988888888888764210 12345789999999999999888875 2222223344444444333 3356677
Q ss_pred HHHhhhccccccCCCCCCCHHHHHHHHHHHcc------CceEEEEEecCCChh------hHHHHHhhCC-CCCCCcEEEE
Q 045150 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSLQ------GKTYLMVLDDVWRKV------DWENLRRAFP-DNKNGSRVII 309 (841)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~------~kr~LlVlDdv~~~~------~~~~l~~~l~-~~~~gs~ilv 309 (841)
.+|+...-... .....+..+....+-..|+ +-++.+|+|.++-.. -...+...-. ...+-+-|-+
T Consensus 100 ~rql~~e~~~~--~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 100 TRQLALELNRI--VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHhhh--heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 77766543221 1112222333344444442 336888888886321 1111111111 2344566778
Q ss_pred EecchHH-------hhcCCCcceeEecCCCChhHHHHHHHhHh
Q 045150 310 TTRNREV-------AERSDEKTYVHKLRFLRGDESWLLFCEKA 345 (841)
Q Consensus 310 TtR~~~v-------~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (841)
|||-... -...... .++-++.++-++..+++++..
T Consensus 178 Ttrld~lE~LEKRVKSRFshr-~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHR-VIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eccccHHHHHHHHHHhhcccc-eeeccCCCChHHHHHHHHHHh
Confidence 9996542 2222221 466677788888888877655
No 237
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.22 E-value=0.29 Score=52.51 Aligned_cols=202 Identities=14% Similarity=0.138 Sum_probs=118.3
Q ss_pred cCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHH-HHHhcCccccCCCCcEEEEEeCCc---cCHHHHHHHHHHHhh
Q 045150 172 FEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLA-KKLYHSSDVKNKFECCAWVSVSQD---YQFQYLLLRIIKSFN 247 (841)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~~l~ 247 (841)
|.+..++|..||..... ..|.|.|+-|.||+.|+ .++..+. +.+..+.+.+- -+....++.++.|+|
T Consensus 1 R~e~~~~L~~wL~e~~~---TFIvV~GPrGSGK~elV~d~~L~~r------~~vL~IDC~~i~~ar~D~~~I~~lA~qvG 71 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN---TFIVVQGPRGSGKRELVMDHVLKDR------KNVLVIDCDQIVKARGDAAFIKNLASQVG 71 (431)
T ss_pred CchHHHHHHHHHhcCCC---eEEEEECCCCCCccHHHHHHHHhCC------CCEEEEEChHhhhccChHHHHHHHHHhcC
Confidence 56678899999998754 58999999999999999 7777642 22555554432 223445555555554
Q ss_pred hcc-------------------ccccCCCCCCCHHHHHHHH-------HH-------------------Hcc---CceEE
Q 045150 248 IIS-------------------SAEEGGLENKSEEDLERCL-------YK-------------------SLQ---GKTYL 279 (841)
Q Consensus 248 ~~~-------------------~~~~~~~~~~~~~~~~~~l-------~~-------------------~L~---~kr~L 279 (841)
-.+ .+...+..+.-+.++...+ ++ +|+ .+|-+
T Consensus 72 Y~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PV 151 (431)
T PF10443_consen 72 YFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPV 151 (431)
T ss_pred CCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCE
Confidence 211 0001122222223333222 11 111 23678
Q ss_pred EEEecCCCh-----hhHHHH---HhhCCCCCCCcEEEEEecchHHhh----cCCCc-ceeEecCCCChhHHHHHHHhHhc
Q 045150 280 MVLDDVWRK-----VDWENL---RRAFPDNKNGSRVIITTRNREVAE----RSDEK-TYVHKLRFLRGDESWLLFCEKAF 346 (841)
Q Consensus 280 lVlDdv~~~-----~~~~~l---~~~l~~~~~gs~ilvTtR~~~v~~----~~~~~-~~~~~l~~L~~~~~~~lf~~~~~ 346 (841)
||+|++-.. ..|+.+ ...+- ..+-..||++|-+..... ..... ...+.+...+.+.|..+...+.-
T Consensus 152 VVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 152 VVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred EEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 999998542 112222 22222 223456888887654443 33222 27888999999999999998875
Q ss_pred CCCCC-------------C-----chhHHHHHHHHHHcCCCchHHHHHhhhhcCC
Q 045150 347 RGTNR-------------E-----KGLEKLGREMVEKCDGLPLAIVVLGGLLSTK 383 (841)
Q Consensus 347 ~~~~~-------------~-----~~~~~~~~~i~~~c~glPlai~~~~~~L~~~ 383 (841)
..... . .....-....+..+||--.-+..+++.++.-
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 43110 0 1123334567788888888888888777665
No 238
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.041 Score=54.99 Aligned_cols=124 Identities=17% Similarity=0.239 Sum_probs=73.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcc-----cc------CCC---CcEEEEEeCCccC-----------------------
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSD-----VK------NKF---ECCAWVSVSQDYQ----------------------- 234 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~vs~~~~----------------------- 234 (841)
..++|+|+.|.|||||.+.+.--.. +. ..+ ..+.||.=...++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 5899999999999999999987211 11 011 2355553211111
Q ss_pred -----HHHHHHHHHHHhhhccccccCCCCCCCHHHHHH-HHHHHccCceEEEEEecCCC------hhhHHHHHhhCCCCC
Q 045150 235 -----FQYLLLRIIKSFNIISSAEEGGLENKSEEDLER-CLYKSLQGKTYLMVLDDVWR------KVDWENLRRAFPDNK 302 (841)
Q Consensus 235 -----~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~L~~kr~LlVlDdv~~------~~~~~~l~~~l~~~~ 302 (841)
.++...+.+++++..... ...+...+..+.+. .|.+.|-.+.=|+|||.--. .....++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~-~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLR-DRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhh-CCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 124455556665543222 12344555556555 46778889999999997532 23344444444433
Q ss_pred CCcEEEEEecchHHhh
Q 045150 303 NGSRVIITTRNREVAE 318 (841)
Q Consensus 303 ~gs~ilvTtR~~~v~~ 318 (841)
|..||++|.+-....
T Consensus 189 -g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 -GKTVLMVTHDLGLVM 203 (254)
T ss_pred -CCEEEEEeCCcHHhH
Confidence 788999998865443
No 239
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.17 E-value=0.054 Score=65.37 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=37.3
Q ss_pred CCCCcccCCChHHHHHHHhcCC------CCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 166 EENPVGFEDDTDVLLSKLLAGD------EPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~------~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...++|-+..++.+...+.... .....++.++|+.|+|||++|+.+++
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3468899999888888876421 11235788999999999999999987
No 240
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.15 E-value=0.049 Score=65.10 Aligned_cols=174 Identities=16% Similarity=0.140 Sum_probs=92.1
Q ss_pred CCCcccCCChHHHHHHHhc---C-------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHH
Q 045150 167 ENPVGFEDDTDVLLSKLLA---G-------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQ 236 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 236 (841)
.++.|.+..++++.+.+.- . .....+-+.++|++|.|||++|+.+++. ....| +.++..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 3467777777777665531 0 1113456889999999999999999984 33333 222210
Q ss_pred HHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh---------h-----hHHHHHhhCCC--
Q 045150 237 YLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK---------V-----DWENLRRAFPD-- 300 (841)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---------~-----~~~~l~~~l~~-- 300 (841)
+++....+ .+...+...+...-+..+.+|++|+++.. . ....+...+..
T Consensus 522 ----~l~~~~vG-----------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~ 586 (733)
T TIGR01243 522 ----EILSKWVG-----------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ 586 (733)
T ss_pred ----HHhhcccC-----------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc
Confidence 11111100 11122333333333566789999998632 0 11223333332
Q ss_pred CCCCcEEEEEecchHHhhcC----CCcceeEecCCCChhHHHHHHHhHhcCCCCC-CchhHHHHHHHHHHcCCCc
Q 045150 301 NKNGSRVIITTRNREVAERS----DEKTYVHKLRFLRGDESWLLFCEKAFRGTNR-EKGLEKLGREMVEKCDGLP 370 (841)
Q Consensus 301 ~~~gs~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~c~glP 370 (841)
...+--||.||......... +.-...+.++..+.++..++|..+.-+.... .-+ ...+++.+.|.-
T Consensus 587 ~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 587 ELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 12234455566554432211 1112678888889999888987665332221 112 345666666643
No 241
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.15 E-value=0.019 Score=60.32 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCcccc----CCCCcEEEEEeCCccCHHHHHHHHHHHhhh
Q 045150 177 DVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVK----NKFECCAWVSVSQDYQFQYLLLRIIKSFNI 248 (841)
Q Consensus 177 ~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 248 (841)
..+-++|.. .-+.-+++-|+|.+|+|||+|+.+++-..... +.=..++||+....|+++++. ++++.++.
T Consensus 83 ~~LD~lLgG-Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 83 QALDGILGG-GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred HHHHHHhCC-CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 334444443 22245799999999999999998876421221 112468999998888888865 45666654
No 242
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.14 E-value=0.07 Score=51.26 Aligned_cols=124 Identities=20% Similarity=0.257 Sum_probs=70.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe-------------------CCccC------------------
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV-------------------SQDYQ------------------ 234 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v-------------------s~~~~------------------ 234 (841)
.|++|+|++|.|||||.+.+..-+... +..+||.- -|.|+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v 105 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV 105 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence 489999999999999999998633222 23444421 12221
Q ss_pred -------HHHHHHHHHHHhhhccccc--cCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChhhHH---HHHhhCCC-C
Q 045150 235 -------FQYLLLRIIKSFNIISSAE--EGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKVDWE---NLRRAFPD-N 301 (841)
Q Consensus 235 -------~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~---~l~~~l~~-~ 301 (841)
.++...++++.++.....+ |..++ ..++-.-.|.+.|.-++-++.||..-+.-+-+ .+...+.. .
T Consensus 106 ~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLS--GGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 106 KKLSKAEAREKALELLEKVGLADKADAYPAQLS--GGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhhCccccC--cHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 2334444555555433221 22221 12344456788888888899999986532222 22222221 2
Q ss_pred CCCcEEEEEecchHHhhcC
Q 045150 302 KNGSRVIITTRNREVAERS 320 (841)
Q Consensus 302 ~~gs~ilvTtR~~~v~~~~ 320 (841)
..|-.+|+.|.....|...
T Consensus 184 ~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 184 EEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HcCCeEEEEechhHHHHHh
Confidence 3466788888877666554
No 243
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.13 E-value=0.015 Score=61.41 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=27.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV 229 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 229 (841)
..+.++|..|+|||.||..+++. +...-..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH
Confidence 46899999999999999999984 3333335677764
No 244
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.12 E-value=0.032 Score=51.86 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=63.2
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe---CCccCHHHHHHHHHHHhhhccccccCCCCCCCH-------
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV---SQDYQFQYLLLRIIKSFNIISSAEEGGLENKSE------- 262 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~------- 262 (841)
.|-|++..|.||||+|-...- +..++=-.+.+|.. ........+++.+ ..+..............+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 677888889999999988876 33333223444332 2233444444333 1111111000000011111
Q ss_pred HHHHHHHHHHccCce-EEEEEecCCCh-----hhHHHHHhhCCCCCCCcEEEEEecchH
Q 045150 263 EDLERCLYKSLQGKT-YLMVLDDVWRK-----VDWENLRRAFPDNKNGSRVIITTRNRE 315 (841)
Q Consensus 263 ~~~~~~l~~~L~~kr-~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~ilvTtR~~~ 315 (841)
....+..++.+.... =|+|||++-.. -..+.+...+.....+.-+|+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 112233444554444 49999998533 245566666666666778999999854
No 245
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.12 E-value=0.0034 Score=65.98 Aligned_cols=47 Identities=21% Similarity=0.381 Sum_probs=39.8
Q ss_pred CCcccCCChHHHHHHHhcCC---CCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 168 NPVGFEDDTDVLLSKLLAGD---EPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
+++|.++.++++++++.... ....+++.++|++|.||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999986522 224589999999999999999999884
No 246
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.10 E-value=0.079 Score=54.32 Aligned_cols=136 Identities=20% Similarity=0.141 Sum_probs=72.3
Q ss_pred ChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccc-
Q 045150 175 DTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAE- 253 (841)
Q Consensus 175 ~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~- 253 (841)
..+.+...+.... ...-++|+|..|.|||||.+.+... +. .....+++.- +.....+-..++......-....
T Consensus 97 ~~~~~l~~l~~~~--~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~~ 170 (270)
T TIGR02858 97 AADKLLPYLVRNN--RVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRG-KKVGIVDERSEIAGCVNGVPQHDV 170 (270)
T ss_pred cHHHHHHHHHhCC--CeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECC-EEeecchhHHHHHHHhcccccccc
Confidence 3455555555432 3568999999999999999999983 32 2233344321 11111111123333322211110
Q ss_pred cCCCCCCCHHHHHHHHHHHc-cCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchHHhhc
Q 045150 254 EGGLENKSEEDLERCLYKSL-QGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNREVAER 319 (841)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 319 (841)
....+..+...-...+...+ ...+=++++|.+-..+.+..+...+. .|..||+||.+..+...
T Consensus 171 ~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 171 GIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred cccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 00011111111122233333 25778999999987777777666653 47789999987766443
No 247
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.05 E-value=0.047 Score=60.93 Aligned_cols=154 Identities=14% Similarity=0.155 Sum_probs=79.2
Q ss_pred CCcccCCChHHHHHHHhc---C----CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHH
Q 045150 168 NPVGFEDDTDVLLSKLLA---G----DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLL 240 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~---~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 240 (841)
++.|.+..++.+...... . .-+..+-|.++|++|.|||.+|+.+.+. ....| +-+..+. +.
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~------l~- 296 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK------LF- 296 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH------hc-
Confidence 456766555554432110 0 1123567899999999999999999983 33222 1122111 00
Q ss_pred HHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChh----------h----HHHHHhhCCCCCCCcE
Q 045150 241 RIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV----------D----WENLRRAFPDNKNGSR 306 (841)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------~----~~~l~~~l~~~~~gs~ 306 (841)
... ...+...+...+...-...+++|++|+++..- . ...+...+.....+--
T Consensus 297 ---~~~-----------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~ 362 (489)
T CHL00195 297 ---GGI-----------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVF 362 (489)
T ss_pred ---ccc-----------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceE
Confidence 000 00111222222222224578999999996320 0 1112222222233344
Q ss_pred EEEEecchH-HhhcC---CCcceeEecCCCChhHHHHHHHhHhcC
Q 045150 307 VIITTRNRE-VAERS---DEKTYVHKLRFLRGDESWLLFCEKAFR 347 (841)
Q Consensus 307 ilvTtR~~~-v~~~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~ 347 (841)
||.||.... +...+ +.-...+.++.-+.++..++|..+...
T Consensus 363 vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred EEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 555665443 21111 111267888888999999999887744
No 248
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.25 Score=57.46 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=68.9
Q ss_pred CCCcccCCChHHHHHHHhcC------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAG------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLL 240 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 240 (841)
..++|-+..++.+.+.+... +.....++..+|+.|+|||-||+.++.. .-+.=+..+-+..|+-. .+ .
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~-Ek---H 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYM-EK---H 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHH-HH---H
Confidence 45777777777777766532 2224568888999999999999998872 21111333344433311 11 1
Q ss_pred HHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceE-EEEEecCCC--hhhHHHHHhhCCCC
Q 045150 241 RIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTY-LMVLDDVWR--KVDWENLRRAFPDN 301 (841)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~--~~~~~~l~~~l~~~ 301 (841)
.+-+-++.++..-+. ++ ...+.+.++.++| +|.||.+.. .+..+-+.+.|.++
T Consensus 565 sVSrLIGaPPGYVGy-------ee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 565 SVSRLIGAPPGYVGY-------EE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHhCCCCCCcee-------cc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 122223333222111 11 2345566677877 888999974 45667777777653
No 249
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.05 E-value=0.034 Score=53.63 Aligned_cols=122 Identities=15% Similarity=0.078 Sum_probs=59.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccc---cC----C-CCCCCHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAE---EG----G-LENKSEE 263 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~----~-~~~~~~~ 263 (841)
.+++|+|..|.|||||++.+.--. ..-...+++.-. +.......+-+.++-..... +. . ....+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 489999999999999999998731 122333443211 11111111111111110000 00 0 1112222
Q ss_pred H-HHHHHHHHccCceEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEecchHHhhc
Q 045150 264 D-LERCLYKSLQGKTYLMVLDDVWRK---VDWENLRRAFPDNKNGSRVIITTRNREVAER 319 (841)
Q Consensus 264 ~-~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 319 (841)
+ -.-.+.+.+-.++=++++|..... ...+.+...+....++..||++|.+......
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 2 223455556667788899988542 2222232222211235678888888776653
No 250
>PRK04132 replication factor C small subunit; Provisional
Probab=96.05 E-value=0.16 Score=60.21 Aligned_cols=152 Identities=14% Similarity=0.072 Sum_probs=93.1
Q ss_pred cCCCcHHHHHHHHhcCccccCCCC-cEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCce
Q 045150 199 MGGLGKTTLAKKLYHSSDVKNKFE-CCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKT 277 (841)
Q Consensus 199 ~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr 277 (841)
+.++||||+|..++++ .....++ .++-++.|...+.. .+++++..+...... -..+.
T Consensus 574 Ph~lGKTT~A~ala~~-l~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------------~~~~~ 631 (846)
T PRK04132 574 PTVLHNTTAALALARE-LFGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------------GGASF 631 (846)
T ss_pred CCcccHHHHHHHHHHh-hhcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------------CCCCC
Confidence 6789999999999984 1122232 35666766644443 344444443321100 01245
Q ss_pred EEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc-hHHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCch
Q 045150 278 YLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRN-REVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKG 354 (841)
Q Consensus 278 ~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~ 354 (841)
-++|+|+++.. +..+.+...+-......++|++|.+ ..+..........+.+.++++++....+...+-..... -
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i 709 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--L 709 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--C
Confidence 79999999865 4666777666654445666665554 34443333334789999999998888777655322211 1
Q ss_pred hHHHHHHHHHHcCCCchHHH
Q 045150 355 LEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 355 ~~~~~~~i~~~c~glPlai~ 374 (841)
..+....|++.++|-+..+.
T Consensus 710 ~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 710 TEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred CHHHHHHHHHHcCCCHHHHH
Confidence 24567889999999886543
No 251
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.03 E-value=0.015 Score=57.15 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=60.4
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC-ccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ-DYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
+|.|+|..|.||||+++.+.. .+.......+++--.. ++.... ...++.+- .. ..+.....+.++.
T Consensus 3 lilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e~~~E~~~~~-~~~~i~q~---------~v-g~~~~~~~~~i~~ 69 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIEDPIEFVHES-KRSLINQR---------EV-GLDTLSFENALKA 69 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEcCCccccccC-ccceeeec---------cc-CCCccCHHHHHHH
Confidence 789999999999999998876 3333333344332111 110000 00000000 00 0112334566777
Q ss_pred HccCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchHHhh
Q 045150 272 SLQGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNREVAE 318 (841)
Q Consensus 272 ~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (841)
.+....=.+++|.+.+.+......... ..|..++.|+...++..
T Consensus 70 aLr~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 70 ALRQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred HhcCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 776667799999998776655544332 23555777776555443
No 252
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.085 Score=59.12 Aligned_cols=73 Identities=26% Similarity=0.239 Sum_probs=48.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCcc--CHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDY--QFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERC 268 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (841)
..-|.|.|..|+|||+||+++++... +...-.+.+|+++.-. ..+.++ ..+...
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQ-----------------------k~l~~v 486 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQ-----------------------KFLNNV 486 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHH-----------------------HHHHHH
Confidence 35689999999999999999998533 5555567777766521 111211 122233
Q ss_pred HHHHccCceEEEEEecCCC
Q 045150 269 LYKSLQGKTYLMVLDDVWR 287 (841)
Q Consensus 269 l~~~L~~kr~LlVlDdv~~ 287 (841)
+.+.+.-.+-+|||||++-
T Consensus 487 fse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 487 FSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHHHHhhCCcEEEEcchhh
Confidence 4455567788999999963
No 253
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.01 E-value=0.025 Score=62.63 Aligned_cols=189 Identities=17% Similarity=0.149 Sum_probs=106.7
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFN 247 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 247 (841)
++||-+.-...|...+..+.- ..--...|..|+||||+|+-++.----.. | .....+.....-+.|...
T Consensus 17 evvGQe~v~~~L~nal~~~ri--~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g-- 85 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRI--AHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEG-- 85 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcc--hhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcC--
Confidence 579998888888888876642 23456789999999999998876210010 0 111111211111222111
Q ss_pred hccccc---cCCCCCCCHHHHHHHHHHHc----cCceEEEEEecCCC--hhhHHHHHhhCCCCCCCcEEEE-EecchHHh
Q 045150 248 IISSAE---EGGLENKSEEDLERCLYKSL----QGKTYLMVLDDVWR--KVDWENLRRAFPDNKNGSRVII-TTRNREVA 317 (841)
Q Consensus 248 ~~~~~~---~~~~~~~~~~~~~~~l~~~L----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~ 317 (841)
...+ -+...+...++..+.+.+.. +++-=..|+|.|+- ...|..+...+-.....-+.|. ||-...+.
T Consensus 86 --~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 86 --SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred --CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 0000 00011122333333333322 45666899999974 4678888777765555555554 55445554
Q ss_pred hcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCch
Q 045150 318 ERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPL 371 (841)
Q Consensus 318 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 371 (841)
...-...+.|.++.++.++-...+...+-..... ...+...-|++..+|...
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~--~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN--IEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCChh
Confidence 4443444889999999998888887766433322 223444566666666543
No 254
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.99 E-value=0.0091 Score=56.28 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=51.8
Q ss_pred cccccccccccchhccccccccCCCceEEeccCCCCcCcccccHHHHh-ccCCcceEEeeecCCCccCCCCCcccccCCC
Q 045150 607 NLQTLKYVRCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIA-KLKNLQFLSVNLSDGTVVLPQSSNAFASLQP 685 (841)
Q Consensus 607 ~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 685 (841)
+...+++.+++-.....|..++.|..|.+.+|.+... . ..+. -+++|..|.|.+| .+..+..+..
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I-----~-p~L~~~~p~l~~L~LtnN--------si~~l~dl~p 108 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRI-----D-PDLDTFLPNLKTLILTNN--------SIQELGDLDP 108 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceee-----c-cchhhhccccceEEecCc--------chhhhhhcch
Confidence 4455666666655556677777888888877764422 1 2222 3467888888877 3445556666
Q ss_pred CCCCcccceeEecccc
Q 045150 686 LSHCQRLVDLRLTGRM 701 (841)
Q Consensus 686 l~~~~~L~~L~L~~~~ 701 (841)
+..||.|++|.+-+|.
T Consensus 109 La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNP 124 (233)
T ss_pred hccCCccceeeecCCc
Confidence 7777777777776653
No 255
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.94 E-value=0.022 Score=59.62 Aligned_cols=101 Identities=21% Similarity=0.194 Sum_probs=60.0
Q ss_pred HHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCC
Q 045150 178 VLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGL 257 (841)
Q Consensus 178 ~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~ 257 (841)
.|-..|..+.-+.-+++-|+|.+|+||||||.++... ....-..++||+....++.. .+++++.....-. -.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~-v~ 113 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLL-VS 113 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeE-Ee
Confidence 3444443133335579999999999999999998773 33344568899877666653 3455543211100 00
Q ss_pred CCCCHHHHHHHHHHHcc-CceEEEEEecCC
Q 045150 258 ENKSEEDLERCLYKSLQ-GKTYLMVLDDVW 286 (841)
Q Consensus 258 ~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~ 286 (841)
...+.++....+...++ +.--++|+|.+-
T Consensus 114 ~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 114 QPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred cCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 11223455555555553 456699999984
No 256
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.93 E-value=0.07 Score=49.29 Aligned_cols=101 Identities=24% Similarity=0.228 Sum_probs=54.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCH-HHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSE-EDLERCLY 270 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~~~l~ 270 (841)
.+++|+|..|.|||||++.+.... ......+|+.-.. .++-- + . .+. +.-.-.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~----~-~---lS~G~~~rv~la 82 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYF----E-Q---LSGGEKMRLALA 82 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEE----c-c---CCHHHHHHHHHH
Confidence 489999999999999999998732 2223344442100 00000 0 0 111 22223345
Q ss_pred HHccCceEEEEEecCCC---hhhHHHHHhhCCCCCCCcEEEEEecchHHhh
Q 045150 271 KSLQGKTYLMVLDDVWR---KVDWENLRRAFPDNKNGSRVIITTRNREVAE 318 (841)
Q Consensus 271 ~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (841)
+.+-.++-++++|+.-. ....+.+...+... +..||++|.+.....
T Consensus 83 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 83 KLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 55656667889998743 23333443333322 235888887766544
No 257
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.92 E-value=0.0015 Score=57.30 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=53.5
Q ss_pred HhccCceeeEEEeecCCcccccccccccchhhccc-cCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCcc
Q 045150 505 LFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGK-LIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPE 582 (841)
Q Consensus 505 ~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~-L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~ 582 (841)
.+.+...|...+|++|. ++ .+|..|.. .+.++.|+|++| .+.++|..+..++.|+.|+++ +.+...|.-
T Consensus 48 ~l~~~~el~~i~ls~N~------fk--~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~v 118 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNG------FK--KFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRV 118 (177)
T ss_pred HHhCCceEEEEecccch------hh--hCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHH
Confidence 34555667777777777 66 66666554 346777777777 677777777777777777777 666666766
Q ss_pred ccccccccce
Q 045150 583 TDMMRELRHL 592 (841)
Q Consensus 583 ~~~L~~L~~L 592 (841)
+..|.+|-.|
T Consensus 119 i~~L~~l~~L 128 (177)
T KOG4579|consen 119 IAPLIKLDML 128 (177)
T ss_pred HHHHHhHHHh
Confidence 6666665555
No 258
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.91 E-value=0.073 Score=52.23 Aligned_cols=155 Identities=15% Similarity=0.125 Sum_probs=84.4
Q ss_pred CCCCcccCCChHH---HHHHHhcCCC---CCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHH
Q 045150 166 EENPVGFEDDTDV---LLSKLLAGDE---PRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLL 239 (841)
Q Consensus 166 ~~~~vGr~~~~~~---l~~~L~~~~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 239 (841)
-+++||-++.+.+ |.+.|...+. =.++-|..+|++|.|||.+|+++.+. .+-.| +.|.. .+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~-----l~vka----t~-- 186 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL-----LLVKA----TE-- 186 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCCce-----EEech----HH--
Confidence 3568898776654 4455544321 13578899999999999999999994 33322 22211 11
Q ss_pred HHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--------------hhHHHHHhhCCC--CCC
Q 045150 240 LRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--------------VDWENLRRAFPD--NKN 303 (841)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--------------~~~~~l~~~l~~--~~~ 303 (841)
-|-+..+.. ..++.+...+.-+.-++.+.+|.++.. +.-..+...+.. .+.
T Consensus 187 -liGehVGdg------------ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ene 253 (368)
T COG1223 187 -LIGEHVGDG------------ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENE 253 (368)
T ss_pred -HHHHHhhhH------------HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCC
Confidence 111222111 011212222222567899999988642 112233333332 234
Q ss_pred CcEEEEEecchHHhhcCCC--cceeEecCCCChhHHHHHHHhHhc
Q 045150 304 GSRVIITTRNREVAERSDE--KTYVHKLRFLRGDESWLLFCEKAF 346 (841)
Q Consensus 304 gs~ilvTtR~~~v~~~~~~--~~~~~~l~~L~~~~~~~lf~~~~~ 346 (841)
|-..|..|....+....-. -...++...-+++|..+++..++-
T Consensus 254 GVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 254 GVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred ceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 6555666655544332211 115677777788888888877763
No 259
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.90 E-value=0.033 Score=58.75 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=46.1
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccc---cC-CCCcEEEEEeCCccCHHHHHHHHHHHhhh
Q 045150 176 TDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDV---KN-KFECCAWVSVSQDYQFQYLLLRIIKSFNI 248 (841)
Q Consensus 176 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 248 (841)
...+-..|..+= +.-.++.|+|.+|+|||||+..++..... .+ .-..++||+....++..+ +.++++.++.
T Consensus 82 ~~~lD~ll~gGi-~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 82 SKELDKLLGGGI-ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred CHHHHHHhcCCC-CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 344545454332 24579999999999999999988752111 11 123579999888788776 3445555543
No 260
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.89 E-value=0.0041 Score=57.56 Aligned_cols=21 Identities=48% Similarity=0.665 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
||.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999985
No 261
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.88 E-value=0.043 Score=55.61 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=56.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccc------------cC--
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAE------------EG-- 255 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~------------~~-- 255 (841)
.-+++.|+|.+|+|||+||.++... ..+ .=..++|++..+. ..++.+.+ ++++...... +.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 4579999999999999999999652 222 3356889988654 44554443 3343211100 00
Q ss_pred CCCCCCHHHHHHHHHHHccC-ceEEEEEecCC
Q 045150 256 GLENKSEEDLERCLYKSLQG-KTYLMVLDDVW 286 (841)
Q Consensus 256 ~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 286 (841)
.....+.+++...+.+.+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 01112335666777777743 55589999975
No 262
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.84 E-value=0.35 Score=54.56 Aligned_cols=200 Identities=13% Similarity=0.058 Sum_probs=117.8
Q ss_pred CCCCcccCCChHHHHHHHhcC--CCCCeEEEEEEccCCCcHHHHHHHHhcCcc------ccCCCCcEEEEEeCCccCHHH
Q 045150 166 EENPVGFEDDTDVLLSKLLAG--DEPRRLVISIYGMGGLGKTTLAKKLYHSSD------VKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~vs~~~~~~~ 237 (841)
+..+-+|+.+..+|...+..- .+..-..+-|.|.+|.|||..+..|.+.-. --..|++ +.|..-.-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHH
Confidence 456778999999998887642 122345899999999999999999998411 1233433 3445455567899
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHcc-----CceEEEEEecCCChhh--HHHHHhhCCC-CCCCcEEEE
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQ-----GKTYLMVLDDVWRKVD--WENLRRAFPD-NKNGSRVII 309 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~~~--~~~l~~~l~~-~~~gs~ilv 309 (841)
+...|..++.+.. ..+....+.+..+.. .+..++++|.++..-. =+-+...|.+ ..++||++|
T Consensus 474 ~Y~~I~~~lsg~~---------~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv 544 (767)
T KOG1514|consen 474 IYEKIWEALSGER---------VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV 544 (767)
T ss_pred HHHHHHHhcccCc---------ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEE
Confidence 9999999988753 334556666666653 4568999999854311 1122233332 446788766
Q ss_pred Eecch-----------HHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCC-CchhHHHHHHHHHHcCCCchHHHHHh
Q 045150 310 TTRNR-----------EVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNR-EKGLEKLGREMVEKCDGLPLAIVVLG 377 (841)
Q Consensus 310 TtR~~-----------~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~c~glPlai~~~~ 377 (841)
-+=.. .+...++. .-+...|-++++-.+....+.-+...- ....+-++++|+..-|..-.|+.+.-
T Consensus 545 i~IaNTmdlPEr~l~nrvsSRlg~--tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 545 IAIANTMDLPERLLMNRVSSRLGL--TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred EEecccccCHHHHhccchhhhccc--eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 54211 11222222 355667777777766666555333111 22333344555555444444444433
No 263
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.83 E-value=0.037 Score=55.75 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=27.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEE
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVS 228 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 228 (841)
...+.++|.+|+|||+||..+++. ....-..+++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE
Confidence 347899999999999999999994 333334566665
No 264
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.82 E-value=0.026 Score=59.05 Aligned_cols=101 Identities=22% Similarity=0.173 Sum_probs=60.2
Q ss_pred HHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCC
Q 045150 178 VLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGL 257 (841)
Q Consensus 178 ~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~ 257 (841)
.|-..|..+.-+.-+++-|+|++|+||||||.+++.. ....-..++||+....+++. .+++++.....- --.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l-~v~ 113 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNL-LIS 113 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHh-eec
Confidence 3434444133235578999999999999999998863 33444568899887766653 344444321110 000
Q ss_pred CCCCHHHHHHHHHHHcc-CceEEEEEecCC
Q 045150 258 ENKSEEDLERCLYKSLQ-GKTYLMVLDDVW 286 (841)
Q Consensus 258 ~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~ 286 (841)
...+.++....+...++ +.--++|+|.|-
T Consensus 114 ~p~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 114 QPDTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred CCCCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 11134555555655553 456689999874
No 265
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.13 Score=56.79 Aligned_cols=130 Identities=15% Similarity=0.217 Sum_probs=77.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLY 270 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 270 (841)
..-|.++|++|.|||-||++|+| +.+..| ++|-.. +++..--+ .++.......+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP--------ELlNkYVG-----------ESErAVR~vFq 598 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP--------ELLNKYVG-----------ESERAVRQVFQ 598 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH--------HHHHHHhh-----------hHHHHHHHHHH
Confidence 45688999999999999999999 455555 444321 11111111 11233334444
Q ss_pred HHccCceEEEEEecCCCh-------h------hHHHHHhhCCC--CCCCcEEEEEecchHHhhcC----CCcceeEecCC
Q 045150 271 KSLQGKTYLMVLDDVWRK-------V------DWENLRRAFPD--NKNGSRVIITTRNREVAERS----DEKTYVHKLRF 331 (841)
Q Consensus 271 ~~L~~kr~LlVlDdv~~~-------~------~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~----~~~~~~~~l~~ 331 (841)
+.-..-++.|.||.++.. . ...++...+.. ...|--||-.|...++.... +.-.....+..
T Consensus 599 RAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~l 678 (802)
T KOG0733|consen 599 RARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGL 678 (802)
T ss_pred HhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecC
Confidence 444678999999999742 1 23444444543 23466666666555443322 11125677777
Q ss_pred CChhHHHHHHHhHhc
Q 045150 332 LRGDESWLLFCEKAF 346 (841)
Q Consensus 332 L~~~~~~~lf~~~~~ 346 (841)
-+.+|-..+++...-
T Consensus 679 Pn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 679 PNAEERVAILKTITK 693 (802)
T ss_pred CCHHHHHHHHHHHhc
Confidence 888888888888774
No 266
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.80 E-value=0.029 Score=54.70 Aligned_cols=57 Identities=26% Similarity=0.197 Sum_probs=38.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC-ccCHHHHHHHHHHHhhhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ-DYQFQYLLLRIIKSFNII 249 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~ 249 (841)
++|+.++|+.|+||||.+-+++.. .+.+=..+..++... .....+-++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 369999999999999988888763 333333466776532 234456677777777765
No 267
>PRK09354 recA recombinase A; Provisional
Probab=95.79 E-value=0.031 Score=59.01 Aligned_cols=101 Identities=22% Similarity=0.193 Sum_probs=61.7
Q ss_pred HHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCC
Q 045150 178 VLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGL 257 (841)
Q Consensus 178 ~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~ 257 (841)
.|-.+|..+.-+.-+++-|+|..|+||||||.+++.. ....-..++||+....++.. .+++++.....-- -.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~ll-i~ 118 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLL-VS 118 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeE-Ee
Confidence 3444444133335579999999999999999998863 33444678999988777753 3455543321100 00
Q ss_pred CCCCHHHHHHHHHHHc-cCceEEEEEecCC
Q 045150 258 ENKSEEDLERCLYKSL-QGKTYLMVLDDVW 286 (841)
Q Consensus 258 ~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~ 286 (841)
...+.++....+...+ .++--+||+|.|-
T Consensus 119 qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 119 QPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred cCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 1112355555555555 3456699999984
No 268
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.78 E-value=0.0031 Score=62.00 Aligned_cols=56 Identities=25% Similarity=0.212 Sum_probs=27.0
Q ss_pred CcccceeEeccccCCCCcccccc--CCCccEEEEEeccCCCC---ChhhhhhcccCCeEEE
Q 045150 689 CQRLVDLRLTGRMTTLPKDMHVL--LPNLECLSLKVVLPEEN---PMPALEMLSNLTILDL 744 (841)
Q Consensus 689 ~~~L~~L~L~~~~~~~p~~~~~l--~~~L~~L~L~~~~l~~~---~~~~l~~l~~L~~L~L 744 (841)
+|+|++|++++|....++.+..+ +.+|..|++.+|..+.. --..+.-+|+|++|+=
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 35555555555543333222221 25566666666644321 1123555666666654
No 269
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.75 E-value=0.078 Score=50.73 Aligned_cols=22 Identities=50% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 4899999999999999999987
No 270
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.73 E-value=0.078 Score=51.96 Aligned_cols=129 Identities=15% Similarity=0.161 Sum_probs=68.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcc-------------ccC-----CCCcE--EEEEeCCccCHHHH-------------
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSD-------------VKN-----KFECC--AWVSVSQDYQFQYL------------- 238 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~-------------~~~-----~F~~~--~wv~vs~~~~~~~~------------- 238 (841)
.+++|+|..|.||||||+.+.--.+ ... .|..+ +|=+-....++..-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~ 113 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG 113 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCC
Confidence 4899999999999999999975211 111 12222 22222222222222
Q ss_pred -------HHHHHHHhhhccccccCCCCCCCHHHHHH-HHHHHccCceEEEEEecCCCh-------hhHHHHHhhCCCCCC
Q 045150 239 -------LLRIIKSFNIISSAEEGGLENKSEEDLER-CLYKSLQGKTYLMVLDDVWRK-------VDWENLRRAFPDNKN 303 (841)
Q Consensus 239 -------~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~L~~kr~LlVlDdv~~~-------~~~~~l~~~l~~~~~ 303 (841)
..+++.+++.+..-...-....+..+.++ .|.+.|.-++-+||+|..-+. ..|+-+...- ...
T Consensus 114 ~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~--~~~ 191 (252)
T COG1124 114 LSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELK--KER 191 (252)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHH--Hhc
Confidence 23344444433211100111233344443 577888888889999987432 2233332221 233
Q ss_pred CcEEEEEecchHHhhcCCC
Q 045150 304 GSRVIITTRNREVAERSDE 322 (841)
Q Consensus 304 gs~ilvTtR~~~v~~~~~~ 322 (841)
+-.+|+.|.+-.+...++.
T Consensus 192 ~lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 192 GLTYLFISHDLALVEHMCD 210 (252)
T ss_pred CceEEEEeCcHHHHHHHhh
Confidence 5568888888887776543
No 271
>PRK07667 uridine kinase; Provisional
Probab=95.73 E-value=0.013 Score=57.22 Aligned_cols=37 Identities=30% Similarity=0.471 Sum_probs=29.9
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 176 TDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 176 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+.+.+.+..... ...+|+|.|.+|.||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~-~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKE-NRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566666665544 558999999999999999999987
No 272
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.69 E-value=0.048 Score=57.98 Aligned_cols=57 Identities=12% Similarity=0.275 Sum_probs=41.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCC----CCcEEEEEeCCccCHHHHHHHHHHHhh
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNK----FECCAWVSVSQDYQFQYLLLRIIKSFN 247 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 247 (841)
.-.++-|+|.+|+|||++|.+++........ =..++||+....|++.++. ++++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 4579999999999999999999864222111 1479999998888887764 4445544
No 273
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.67 E-value=0.13 Score=48.93 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=45.3
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCC-CHHHHHHHHHH
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENK-SEEDLERCLYK 271 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~ 271 (841)
++.|.|.+|.||||+|..+... ... .++++.....+ ..+..+.|....... +...... ....+...+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~~~-~~e~~~ri~~h~~~R----~~~w~t~E~~~~l~~~i~~ 72 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQPF-DDEMAARIAHHRQRR----PAHWQTVEEPLDLAELLRA 72 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCCCC-hHHHHHHHHHHHhcC----CCCCeEecccccHHHHHHh
Confidence 5899999999999999999863 211 23444443333 334455554443322 1112111 11234555555
Q ss_pred HccCceEEEEEecC
Q 045150 272 SLQGKTYLMVLDDV 285 (841)
Q Consensus 272 ~L~~kr~LlVlDdv 285 (841)
+..+.. ++++|.+
T Consensus 73 ~~~~~~-~VlID~L 85 (170)
T PRK05800 73 DAAPGR-CVLVDCL 85 (170)
T ss_pred hcCCCC-EEEehhH
Confidence 444333 6888987
No 274
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.64 E-value=0.004 Score=61.27 Aligned_cols=108 Identities=24% Similarity=0.291 Sum_probs=56.9
Q ss_pred cccccccccccccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCC
Q 045150 605 LTNLQTLKYVRCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQ 684 (841)
Q Consensus 605 l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 684 (841)
+.+|+.|++.++.......+..|++|++|.++.|.....+... ....++++|+.|++++|++. .++.+.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~---vl~e~~P~l~~l~ls~Nki~--------~lstl~ 110 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLE---VLAEKAPNLKVLNLSGNKIK--------DLSTLR 110 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccce---ehhhhCCceeEEeecCCccc--------cccccc
Confidence 3455555555555555555666777777777766322111111 23344577777777777432 233445
Q ss_pred CCCCCcccceeEeccccCC----CCccccccCCCccEEEEEec
Q 045150 685 PLSHCQRLVDLRLTGRMTT----LPKDMHVLLPNLECLSLKVV 723 (841)
Q Consensus 685 ~l~~~~~L~~L~L~~~~~~----~p~~~~~l~~~L~~L~L~~~ 723 (841)
.+..+++|..|++.++... .-..++.++++|++|+-...
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 5555566666666654211 11223334577777665544
No 275
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.64 E-value=0.065 Score=52.10 Aligned_cols=115 Identities=21% Similarity=0.334 Sum_probs=69.9
Q ss_pred CCCcccCCChHHHHHHHh---cCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLL---AGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRII 243 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 243 (841)
..++|.+..++.+++--. .+. ...-|.++|..|.|||.|++++.+ .+.+..-. -|.|++. ++
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~--pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~----dl----- 124 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGL--PANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE----DL----- 124 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCC--cccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH----HH-----
Confidence 357898888888776432 222 234678999999999999999998 45544433 3333321 00
Q ss_pred HHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCC---ChhhHHHHHhhCCCC---CCCcEEEEEecch
Q 045150 244 KSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVW---RKVDWENLRRAFPDN---KNGSRVIITTRNR 314 (841)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~---~~gs~ilvTtR~~ 314 (841)
.+...+.+.|+. ..+||.|..||+. .++....++..+..+ .+...++..|.++
T Consensus 125 ----------------~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 125 ----------------ATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ----------------hhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 011222222221 4789999999994 335677888887643 2344455555443
No 276
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.64 E-value=0.21 Score=45.81 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHhhhHHHHHhhhh
Q 045150 2 VDAVVSFVVQRLGDYLIQEAKTLGGVRDEVESLKKELEWMQCFVKDAEAKQ-AGNDLIRQWVSDIRDIAYDAEDVLDKYM 80 (841)
Q Consensus 2 a~~~v~~~~~kl~~~l~~e~~~~~~v~~~~~~l~~~l~~i~~~l~~~~~~~-~~~~~~~~wl~~lr~~~yd~eD~ld~~~ 80 (841)
++||++.+++.|...+.+........+.-.+.|..+++.|..++++.+... ..+..-+.-++++.+...+++++++.|.
T Consensus 7 ~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~s 86 (147)
T PF05659_consen 7 GGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCS 86 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence 356777778888888888877777888889999999999999999998763 3444447888999999999999999874
No 277
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.63 E-value=0.079 Score=53.30 Aligned_cols=128 Identities=20% Similarity=0.256 Sum_probs=68.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccC----------------CC-CcEEEEEeC----------------C-------
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKN----------------KF-ECCAWVSVS----------------Q------- 231 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------~F-~~~~wv~vs----------------~------- 231 (841)
.+++|+|+.|+|||||.+.++.--..+. .+ ..+++|.-+ +
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~ 108 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF 108 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccc
Confidence 5899999999999999999987210000 00 012222111 0
Q ss_pred ---ccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHH-HHHHHHccCceEEEEEecCCCh------hhHHHHHhhCCCC
Q 045150 232 ---DYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLE-RCLYKSLQGKTYLMVLDDVWRK------VDWENLRRAFPDN 301 (841)
Q Consensus 232 ---~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~~L~~kr~LlVlDdv~~~------~~~~~l~~~l~~~ 301 (841)
.....++..+.++.++...... ..+...+..+.+ ..|.+.|..+.=++.||.--+. ...-++...+. .
T Consensus 109 ~~~~~~D~~~v~~aL~~~~~~~la~-r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~-~ 186 (258)
T COG1120 109 GRPSKEDEEIVEEALELLGLEHLAD-RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN-R 186 (258)
T ss_pred cCCCHhHHHHHHHHHHHhCcHHHhc-CcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-H
Confidence 0112234555566665543321 123344444444 3466777777778888875332 11111222222 2
Q ss_pred CCCcEEEEEecchHHhhcCC
Q 045150 302 KNGSRVIITTRNREVAERSD 321 (841)
Q Consensus 302 ~~gs~ilvTtR~~~v~~~~~ 321 (841)
.+|..||+++.+-+.|...+
T Consensus 187 ~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 187 EKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred hcCCEEEEEecCHHHHHHhC
Confidence 34677999999987776543
No 278
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.61 E-value=0.036 Score=62.23 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=50.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHH
Q 045150 189 PRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERC 268 (841)
Q Consensus 189 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (841)
+.-+++.++|++|+||||||.-|++. ..| .++=|.+|..-+...+-..|...+...+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s------------------ 380 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHS------------------ 380 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhcc------------------
Confidence 45689999999999999999999983 223 2556677776666555555544443321
Q ss_pred HHHHc--cCceEEEEEecCCCh
Q 045150 269 LYKSL--QGKTYLMVLDDVWRK 288 (841)
Q Consensus 269 l~~~L--~~kr~LlVlDdv~~~ 288 (841)
.+ .+++.-||+|.++-.
T Consensus 381 ---~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 ---VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred ---ccccCCCcceEEEecccCC
Confidence 12 256778999999754
No 279
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.61 E-value=0.074 Score=57.51 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3799999999999999999865
No 280
>PTZ00035 Rad51 protein; Provisional
Probab=95.60 E-value=0.058 Score=57.45 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCcccc---C-CCCcEEEEEeCCccCHHHHHHHHHHHhhh
Q 045150 177 DVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVK---N-KFECCAWVSVSQDYQFQYLLLRIIKSFNI 248 (841)
Q Consensus 177 ~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 248 (841)
..+-++|..+ -+.-.++.|+|..|.|||||+..++-..... + .=..++||+....|++++ +.+++++++.
T Consensus 105 ~~LD~lLgGG-i~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 105 TQLDKLLGGG-IETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred HHHHHHhCCC-CCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 3444444432 2245799999999999999999887532221 1 123577999887788777 4445555543
No 281
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.0098 Score=53.95 Aligned_cols=22 Identities=45% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
--|.|.||+|+||||+++++.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH
Confidence 3589999999999999999997
No 282
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.57 E-value=0.041 Score=57.68 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.++.++|+|++|.|||.+|+.+++.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999993
No 283
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.57 E-value=0.082 Score=63.90 Aligned_cols=121 Identities=13% Similarity=0.125 Sum_probs=66.0
Q ss_pred CCCCcccCCChHHHHHHHhcC------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHH
Q 045150 166 EENPVGFEDDTDVLLSKLLAG------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLL 239 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 239 (841)
...++|-+..++.+...+... ......++.++|+.|+|||+||+.+.+ .+-+.-...+-+..+.-.+...+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~- 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTV- 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccccH-
Confidence 356889888888888877532 111235678999999999999999987 22221123344444432221111
Q ss_pred HHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCce-EEEEEecCCCh--hhHHHHHhhCCC
Q 045150 240 LRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKT-YLMVLDDVWRK--VDWENLRRAFPD 300 (841)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr-~LlVlDdv~~~--~~~~~l~~~l~~ 300 (841)
..-++.+.. -....... .+.+.++.++ -+++||+++.. +.++.+...+..
T Consensus 585 ---~~l~g~~~g----yvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 585 ---SKLIGSPPG----YVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred ---HHhcCCCCc----ccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhcc
Confidence 111121110 01111112 2334444444 58999999753 456666666554
No 284
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.56 E-value=0.044 Score=53.68 Aligned_cols=83 Identities=23% Similarity=0.121 Sum_probs=44.3
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccC-CCC---cEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHH
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKN-KFE---CCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERC 268 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~---~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (841)
||+|.|.+|+||||+|+.+.. .... ... ....+.............. -.. ... ...-......+.+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~-~~~-~~~~~~p~a~d~~~l~~~ 75 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGR-GEN-RYNFDHPDAFDFDLLKED 75 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHH-CTT-TSSTTSGGGBSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhc-ccc-ccCCCCccccCHHHHHHH
Confidence 799999999999999999987 3332 222 2333333222222221111 111 100 000112334566777777
Q ss_pred HHHHccCceEEE
Q 045150 269 LYKSLQGKTYLM 280 (841)
Q Consensus 269 l~~~L~~kr~Ll 280 (841)
+....+++..-+
T Consensus 76 l~~L~~g~~i~~ 87 (194)
T PF00485_consen 76 LKALKNGGSIEI 87 (194)
T ss_dssp HHHHHTTSCEEE
T ss_pred HHHHhCCCcccc
Confidence 777666666544
No 285
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.15 Score=51.15 Aligned_cols=94 Identities=22% Similarity=0.372 Sum_probs=61.0
Q ss_pred CCCcccCCChHHHHHHHhc---------CCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLA---------GDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~---------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
+++.|.+..++.+.+...- +.....+-|.++|++|.||+-||++|+.. ... -|++||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnS-----TFFSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANS-----TFFSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCC-----ceEEeehH-----
Confidence 3567888888888776432 22224688999999999999999999984 222 23455442
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHc-cCceEEEEEecCCC
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSL-QGKTYLMVLDDVWR 287 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~ 287 (841)
++.....+. .+.+...+.+.- ++|+-.|.+|.++.
T Consensus 201 ---DLvSKWmGE------------SEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 ---DLVSKWMGE------------SEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ---HHHHHHhcc------------HHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 223332221 144555555554 57899999999974
No 286
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.54 E-value=0.0013 Score=75.02 Aligned_cols=241 Identities=22% Similarity=0.225 Sum_probs=110.8
Q ss_pred HHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCC-cCccccC----cccCCCCCCCeeecC-Ccc-
Q 045150 504 PLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGT-TFIRDFP----SSIFNLPGLQTLDLS-RCI- 576 (841)
Q Consensus 504 ~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~-~~~~~lp----~~i~~L~~L~~L~L~-~~~- 576 (841)
.....+++|+.|.+.++.. +....+-.....+++|+.|+++++ ..+...+ .....+.+|+.|+++ +..
T Consensus 182 ~l~~~~~~L~~l~l~~~~~-----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 182 RLLSSCPLLKRLSLSGCSK-----ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred HHHhhCchhhHhhhccccc-----CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc
Confidence 4445578888888887763 432113344566778888888762 1211111 223345666677766 432
Q ss_pred cccCccccccccccceecccccccCCccccccccccccccc----chhccccccccCCCceEEeccCCCCcCcccccHHH
Q 045150 577 VQLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK----SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFES 652 (841)
Q Consensus 577 ~~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~ 652 (841)
... .+. .+ ...+++|+.|.+.+|. .........+++|++|+++++.... ...+. ..
T Consensus 257 sd~--~l~------~l---------~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~--d~~l~-~~ 316 (482)
T KOG1947|consen 257 TDI--GLS------AL---------ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT--DSGLE-AL 316 (482)
T ss_pred Cch--hHH------HH---------HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch--HHHHH-HH
Confidence 110 000 00 0113445554433333 1122223344555666655554220 11111 22
Q ss_pred HhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccC----CCCccccccCCCccEEEEEeccCCCC
Q 045150 653 IAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMT----TLPKDMHVLLPNLECLSLKVVLPEEN 728 (841)
Q Consensus 653 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~----~~p~~~~~l~~~L~~L~L~~~~l~~~ 728 (841)
..++++|+.|.+... ..|+.++.+.+.+... .........+++|+.+.|..+.....
T Consensus 317 ~~~c~~l~~l~~~~~-------------------~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~ 377 (482)
T KOG1947|consen 317 LKNCPNLRELKLLSL-------------------NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDL 377 (482)
T ss_pred HHhCcchhhhhhhhc-------------------CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCc
Confidence 333444444443322 1133444444443211 11112222257777777777764333
Q ss_pred C-hhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEccC--ccccccccccccccCC
Q 045150 729 P-MPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEER--AMPMLRGLKIPSDIPN 805 (841)
Q Consensus 729 ~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~--~~p~L~~L~l~~~c~~ 805 (841)
. ...+.++|+|. ..+... ...+.+|+.|.+..|. ..+.-..... .+.++..+.+. +|+.
T Consensus 378 ~~~~~l~gc~~l~-~~l~~~---------------~~~~~~l~~L~l~~~~-~~t~~~l~~~~~~~~~~~~l~~~-~~~~ 439 (482)
T KOG1947|consen 378 GLELSLRGCPNLT-ESLELR---------------LCRSDSLRVLNLSDCR-LVTDKGLRCLADSCSNLKDLDLS-GCRV 439 (482)
T ss_pred chHHHhcCCcccc-hHHHHH---------------hccCCccceEecccCc-cccccchHHHhhhhhccccCCcc-Cccc
Confidence 3 24455666663 222110 1123337788888776 4443322211 16677888888 7776
Q ss_pred C
Q 045150 806 L 806 (841)
Q Consensus 806 L 806 (841)
+
T Consensus 440 ~ 440 (482)
T KOG1947|consen 440 I 440 (482)
T ss_pred c
Confidence 6
No 287
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.53 E-value=0.064 Score=56.97 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=47.4
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccc---cC-CCCcEEEEEeCCccCHHHHHHHHHHHhhh
Q 045150 176 TDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDV---KN-KFECCAWVSVSQDYQFQYLLLRIIKSFNI 248 (841)
Q Consensus 176 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 248 (841)
...+-..|..+= +.-.++-|+|.+|+|||+||..++-.... .+ .-..++||+....|+++++ .+|++.++.
T Consensus 109 ~~~LD~lL~GG~-~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 109 SRELDKILEGGI-ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred CHHHHHhhcCCC-cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 344444454332 24578999999999999999988742121 11 1136999999999988876 456666654
No 288
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.51 E-value=0.031 Score=57.09 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=39.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccC----CCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKN----KFECCAWVSVSQDYQFQYLLLRIIKSFN 247 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 247 (841)
.|.=|+|.+|+|||.||..++-...+.. .=..++||+....|+.+++. +|+++..
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 5899999999999999988764322221 12359999998889887765 5666543
No 289
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.50 E-value=0.097 Score=55.73 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..++|+++|.+|+||||++.+++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999999986
No 290
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.48 E-value=0.13 Score=54.58 Aligned_cols=89 Identities=11% Similarity=0.086 Sum_probs=49.6
Q ss_pred CceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-HHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCC
Q 045150 275 GKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNR-EVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNR 351 (841)
Q Consensus 275 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 351 (841)
+++-++|+|++... ..-..+...+.....+..+|++|.+. .+..........+.+.+++.++..+.+.... .
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~- 186 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V- 186 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-
Confidence 44445566888653 23333444333323345566666664 3443333333788999999999888876531 1
Q ss_pred CchhHHHHHHHHHHcCCCchHH
Q 045150 352 EKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 352 ~~~~~~~~~~i~~~c~glPlai 373 (841)
.... ..+..++|.|+.+
T Consensus 187 ~~~~-----~~l~~~~g~p~~~ 203 (325)
T PRK08699 187 AEPE-----ERLAFHSGAPLFD 203 (325)
T ss_pred CcHH-----HHHHHhCCChhhh
Confidence 1111 1135678988643
No 291
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.47 E-value=0.13 Score=48.82 Aligned_cols=115 Identities=16% Similarity=0.087 Sum_probs=57.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccc-cCC--CC---cEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCH-HH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDV-KNK--FE---CCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSE-ED 264 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~---~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~ 264 (841)
.+++|+|..|.|||||++.+..-... .+. ++ .+.+ +.+...... ..+.+.+.... ....+. +.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~--~tv~~nl~~~~------~~~LS~G~~ 97 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPL--GTLREQLIYPW------DDVLSGGEQ 97 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCcccc--ccHHHHhhccC------CCCCCHHHH
Confidence 48999999999999999999874211 111 11 1222 233321110 01222221100 011221 22
Q ss_pred HHHHHHHHccCceEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEecchHHhh
Q 045150 265 LERCLYKSLQGKTYLMVLDDVWRK---VDWENLRRAFPDNKNGSRVIITTRNREVAE 318 (841)
Q Consensus 265 ~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (841)
-.-.+.+.+-.++=++++|.--.. .....+...+... +..||++|.+.....
T Consensus 98 ~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 98 QRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 333455556566778889987432 2223333333222 356888888776654
No 292
>PRK04296 thymidine kinase; Provisional
Probab=95.46 E-value=0.015 Score=56.57 Aligned_cols=113 Identities=14% Similarity=0.081 Sum_probs=61.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
.++.|+|..|.||||+|..... +...+-..++.+. ..++.+.....++.+++..... .......++...+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~----~~~~~~~~~~~~~~~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREA----IPVSSDTDIFELIEE 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccc----eEeCChHHHHHHHHh
Confidence 4778999999999999999887 3433333344442 2222222233445555432111 011223445555554
Q ss_pred HccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchH
Q 045150 272 SLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNRE 315 (841)
Q Consensus 272 ~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~ 315 (841)
..++.-+||+|.+.-. ++...+...+ ...|..||+|.++.+
T Consensus 75 -~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 -EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred -hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 3334458999998532 2222333322 234778999988744
No 293
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.44 E-value=0.14 Score=56.21 Aligned_cols=24 Identities=42% Similarity=0.448 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+.++.++|.+|+||||.|.+++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999888876
No 294
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.43 E-value=0.024 Score=55.05 Aligned_cols=29 Identities=38% Similarity=0.544 Sum_probs=25.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNK 220 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 220 (841)
.+.+|+|.|.+|.||||+|+.++. .++..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcC
Confidence 568999999999999999999998 45544
No 295
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.41 E-value=0.16 Score=50.54 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.+.-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999999863
No 296
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.38 E-value=0.069 Score=56.66 Aligned_cols=57 Identities=11% Similarity=0.262 Sum_probs=41.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccC----CCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKN----KFECCAWVSVSQDYQFQYLLLRIIKSFN 247 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 247 (841)
.-.++-|+|.+|+||||++.+++....... .=..++||+....|+.+++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 457999999999999999999976422210 11279999998888887654 4455544
No 297
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.36 E-value=0.12 Score=49.61 Aligned_cols=21 Identities=52% Similarity=0.673 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
++.++|++|+||||++..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999987
No 298
>PRK10867 signal recognition particle protein; Provisional
Probab=95.34 E-value=0.087 Score=57.73 Aligned_cols=24 Identities=46% Similarity=0.535 Sum_probs=21.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|.++|.+|+||||.|.+++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998888776
No 299
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.087 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.+.-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 300
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.096 Score=50.17 Aligned_cols=121 Identities=19% Similarity=0.161 Sum_probs=60.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCC--------CCHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLEN--------KSEE 263 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~--------~~~~ 263 (841)
.+++|+|..|.|||||++.++... ......+++.-....+.. ..+...++.-... +.-... .+..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~-~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEE-PSLYENLTVRENLKLSGG 99 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecC-CccccCCcHHHHhhcCHH
Confidence 489999999999999999998731 223344444211100000 1111111111000 000000 1112
Q ss_pred H-HHHHHHHHccCceEEEEEecCCCh---hhHHHHHhhCCC-CCCCcEEEEEecchHHhhc
Q 045150 264 D-LERCLYKSLQGKTYLMVLDDVWRK---VDWENLRRAFPD-NKNGSRVIITTRNREVAER 319 (841)
Q Consensus 264 ~-~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~ 319 (841)
+ -.-.+.+.+-.++=++++|+.-.. ...+.+...+.. ...|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 2 223466667777889999998532 222333333322 1226678888888775553
No 301
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.29 E-value=0.13 Score=50.67 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999874
No 302
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.28 E-value=0.013 Score=64.88 Aligned_cols=45 Identities=24% Similarity=0.408 Sum_probs=38.4
Q ss_pred CCcccCCChHHHHHHHhc----CCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 168 NPVGFEDDTDVLLSKLLA----GDEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+++|.++.+++|++.|.. -.. .-+++.++|+.|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~-~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEE-KKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCC-CCceEEEecCCCCCchHHHHHHHH
Confidence 589999999999999832 222 457999999999999999999998
No 303
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.28 E-value=0.18 Score=52.44 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=37.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFN 247 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 247 (841)
.++.|.|.+|+||||++.++.... ...+=..++|++... +..++...+...+.
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHHHh
Confidence 488899999999999999987731 222234688888655 45666666655543
No 304
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.28 E-value=0.031 Score=60.90 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=50.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCC-----HHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKS-----EEDLE 266 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-----~~~~~ 266 (841)
..++|+|..|+|||||++.+.... .....++++.-.+.-++.+.....+.......-.--...+... .....
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 479999999999999999988732 2223455554323334444444333332110000000000000 11222
Q ss_pred HHHHHHc--cCceEEEEEecCCC
Q 045150 267 RCLYKSL--QGKTYLMVLDDVWR 287 (841)
Q Consensus 267 ~~l~~~L--~~kr~LlVlDdv~~ 287 (841)
-.+.+++ +++.+|+++||+-.
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchHH
Confidence 3455666 68999999999943
No 305
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.28 E-value=0.059 Score=51.04 Aligned_cols=113 Identities=19% Similarity=0.112 Sum_probs=59.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC--ccCHHHHHHHHHHHhhhccccccCCCCCCCH-HHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ--DYQFQYLLLRIIKSFNIISSAEEGGLENKSE-EDLERC 268 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~~~ 268 (841)
.+++|+|..|.|||||.+.++-- .......+++.-.. ..+..+.. .+.++.. + . .+. +.-.-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~----~-q---LS~G~~qrl~ 92 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDAR---RAGIAMV----Y-Q---LSVGERQMVE 92 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHH---hcCeEEE----E-e---cCHHHHHHHH
Confidence 48999999999999999999873 22334455543211 11111111 0111110 0 0 122 222334
Q ss_pred HHHHccCceEEEEEecCCCh---hhHHHHHhhCCC-CCCCcEEEEEecchHHhh
Q 045150 269 LYKSLQGKTYLMVLDDVWRK---VDWENLRRAFPD-NKNGSRVIITTRNREVAE 318 (841)
Q Consensus 269 l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~ 318 (841)
+.+.+-.++-++++|+.-.. ...+.+...+.. ...|..||++|.+.....
T Consensus 93 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 55566666778889987532 223333333321 123667888888876433
No 306
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.047 Score=59.01 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=35.3
Q ss_pred CCcccCC---ChHHHHHHHhcCCC------CCeEEEEEEccCCCcHHHHHHHHhcCc
Q 045150 168 NPVGFED---DTDVLLSKLLAGDE------PRRLVISIYGMGGLGKTTLAKKLYHSS 215 (841)
Q Consensus 168 ~~vGr~~---~~~~l~~~L~~~~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 215 (841)
++-|.|+ ++++|++.|.+... .=++-|.++|++|.|||-||++|+-..
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4557665 55667777766432 124678999999999999999999853
No 307
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.25 E-value=0.24 Score=49.79 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.++.-
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 308
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.27 Score=47.90 Aligned_cols=127 Identities=16% Similarity=0.232 Sum_probs=69.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHH
Q 045150 189 PRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERC 268 (841)
Q Consensus 189 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (841)
.+++-+.++|++|.|||-||+.|+++ ..+-|+.||..- +.+.. ++ +....
T Consensus 179 aQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgse----lvqk~---ig----------------egsrm 228 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSE----LVQKY---IG----------------EGSRM 228 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechHH----HHHHH---hh----------------hhHHH
Confidence 35677899999999999999999983 445677777631 11111 01 11112
Q ss_pred HHHHc----cCceEEEEEecCCChh----------h------HHHHHhhCCC--CCCCcEEEEEecchHHhhcC----CC
Q 045150 269 LYKSL----QGKTYLMVLDDVWRKV----------D------WENLRRAFPD--NKNGSRVIITTRNREVAERS----DE 322 (841)
Q Consensus 269 l~~~L----~~kr~LlVlDdv~~~~----------~------~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~----~~ 322 (841)
+++.+ ..-+-.|.+|.+++.. + .-.+...+.. ..+.-+||.+|..-++.... +.
T Consensus 229 vrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgr 308 (404)
T KOG0728|consen 229 VRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGR 308 (404)
T ss_pred HHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCc
Confidence 22221 2345677788776421 1 1112222321 23445777766544443321 12
Q ss_pred cceeEecCCCChhHHHHHHHhHh
Q 045150 323 KTYVHKLRFLRGDESWLLFCEKA 345 (841)
Q Consensus 323 ~~~~~~l~~L~~~~~~~lf~~~~ 345 (841)
-...++.++-+++...++++-+.
T Consensus 309 idrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 309 IDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccccccCCCCCHHHHHHHHHHhh
Confidence 22567777777777777776554
No 309
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.21 E-value=0.015 Score=53.45 Aligned_cols=44 Identities=27% Similarity=0.225 Sum_probs=29.2
Q ss_pred cccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 170 VGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 170 vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
||....++++.+.+..-.. ....|.|+|..|.||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~-~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK-SSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC-SSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 4555566666666553211 2235789999999999999999974
No 310
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.19 E-value=0.17 Score=50.72 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 311
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.19 E-value=0.25 Score=56.79 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=38.4
Q ss_pred CCCCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 165 VEENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
....++|....+.++.+.+..-.. .-..|.|+|..|.|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~-~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR-SNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC-cCCCEEEECCCCccHHHHHHHHHHh
Confidence 345789999999998887764322 2235779999999999999999974
No 312
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.18 E-value=0.22 Score=54.82 Aligned_cols=38 Identities=26% Similarity=0.269 Sum_probs=26.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV 229 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 229 (841)
.++.++|++|+||||++.++.........-..+..|+.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 58999999999999998888762110123345666664
No 313
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.17 E-value=0.12 Score=56.91 Aligned_cols=91 Identities=21% Similarity=0.257 Sum_probs=50.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccC--HHHHHHHHHHHhhhccccccCCCCCCCHHHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQ--FQYLLLRIIKSFNIISSAEEGGLENKSEEDLER 267 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 267 (841)
.+.+|.++|..|+||||.|.+++.. .+..-..++-|++. .+. ..+.++.+..+++.+....+ ...+......
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D-~~R~aa~eQL~~la~~~gvp~~~~~---~~~d~~~i~~ 167 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAAD-TYRPAAYDQLKQLAEKIGVPFYGDP---DNKDAVEIAK 167 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCC-CCCHHHHHHHHHHHHHcCCcEEecC---CccCHHHHHH
Confidence 4679999999999999999999873 33321234445432 222 24456666666654322110 1112222222
Q ss_pred HHHHHccCceEEEEEecCCC
Q 045150 268 CLYKSLQGKTYLMVLDDVWR 287 (841)
Q Consensus 268 ~l~~~L~~kr~LlVlDdv~~ 287 (841)
...+.+.+. =++|+|..-.
T Consensus 168 ~al~~~~~~-DvVIIDTAGr 186 (437)
T PRK00771 168 EGLEKFKKA-DVIIVDTAGR 186 (437)
T ss_pred HHHHHhhcC-CEEEEECCCc
Confidence 223333343 5788998843
No 314
>PTZ00301 uridine kinase; Provisional
Probab=95.16 E-value=0.021 Score=56.30 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998876
No 315
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.13 E-value=0.019 Score=55.27 Aligned_cols=36 Identities=42% Similarity=0.635 Sum_probs=29.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEE
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVS 228 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 228 (841)
..+|.++|+.|+||||+|+.+++ .....+..++++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 45899999999999999999998 5555666666663
No 316
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.097 Score=60.22 Aligned_cols=177 Identities=14% Similarity=0.142 Sum_probs=96.9
Q ss_pred CCcccCCChHH---HHHHHhcCCC------CCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHH
Q 045150 168 NPVGFEDDTDV---LLSKLLAGDE------PRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYL 238 (841)
Q Consensus 168 ~~vGr~~~~~~---l~~~L~~~~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 238 (841)
++.|.++.+++ +++.|..++. .-++=+.++|++|.|||-||++++-...+ =|+++|..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS------ 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS------ 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH------
Confidence 56787765555 4555544321 23567899999999999999999984322 23444432
Q ss_pred HHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHc-cCceEEEEEecCCCh-----------------hhHHHHHhhCCC
Q 045150 239 LLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSL-QGKTYLMVLDDVWRK-----------------VDWENLRRAFPD 300 (841)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~-----------------~~~~~l~~~l~~ 300 (841)
+..+-+... . ......+...- ...+..+.+|+++.. ..+.++...+..
T Consensus 379 --EFvE~~~g~-----------~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 379 --EFVEMFVGV-----------G-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG 444 (774)
T ss_pred --HHHHHhccc-----------c-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence 111111110 0 11112222222 456778888887542 124444444443
Q ss_pred CCCCc--EEEEEecchHHhhcC----CCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHH
Q 045150 301 NKNGS--RVIITTRNREVAERS----DEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAI 373 (841)
Q Consensus 301 ~~~gs--~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 373 (841)
...++ -++-+|...++.... +.-...+.+..-+.....++|.-|+-..... .+..++++ |+...-|.+=|.
T Consensus 445 f~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 445 FETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 22222 333455544443321 1222677788888888889998888544332 34455666 777777777543
No 317
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.13 E-value=0.068 Score=55.62 Aligned_cols=40 Identities=28% Similarity=0.274 Sum_probs=27.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV 229 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 229 (841)
...+++|+|.+|+||||++.+++.....+..-..+..|+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 3569999999999999999998873222211124556654
No 318
>PRK04040 adenylate kinase; Provisional
Probab=95.11 E-value=0.037 Score=53.65 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|+|++|+||||+++.+.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999988
No 319
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.08 E-value=0.2 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.++.-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 320
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.077 Score=53.81 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=50.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCcc--ccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSD--VKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERC 268 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (841)
-++|.++|++|.|||+|.++.++.-. ..+.|....-+.+... ++.......+ ..-...+..+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWFsES--------gKlV~kmF~k 240 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWFSES--------GKLVAKMFQK 240 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHHhhh--------hhHHHHHHHH
Confidence 47899999999999999999999643 3456666666654331 1222222111 1223455666
Q ss_pred HHHHccCce--EEEEEecCCC
Q 045150 269 LYKSLQGKT--YLMVLDDVWR 287 (841)
Q Consensus 269 l~~~L~~kr--~LlVlDdv~~ 287 (841)
|++.+.++. +.+.+|.|..
T Consensus 241 I~ELv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 241 IQELVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHHHHhCCCcEEEEEeHHHHH
Confidence 677775544 4556788854
No 321
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.07 E-value=0.15 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 322
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.06 E-value=0.38 Score=48.01 Aligned_cols=186 Identities=16% Similarity=0.174 Sum_probs=101.2
Q ss_pred CcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC----ccccCCCCcEEEEEeCCc----------c-
Q 045150 169 PVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS----SDVKNKFECCAWVSVSQD----------Y- 233 (841)
Q Consensus 169 ~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~vs~~----------~- 233 (841)
+.++++....+......+ +..-..++|+.|.||-|.+..+.+. .-.+-+-+.+.|.+-|.. +
T Consensus 15 l~~~~e~~~~Lksl~~~~---d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTG---DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred cccHHHHHHHHHHhcccC---CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 556666666666655422 3567889999999999977766653 111223344556554432 1
Q ss_pred ----------CHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceE-EEEEecCCCh--hhHHHHHhhCCC
Q 045150 234 ----------QFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTY-LMVLDDVWRK--VDWENLRRAFPD 300 (841)
Q Consensus 234 ----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~--~~~~~l~~~l~~ 300 (841)
..+-+.++|+++.......+ . -..+.| ++|+-.+++. +.-..++..+..
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~qie-----~-------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk 153 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQIE-----T-------------QGQRPFKVVVINEADELTRDAQHALRRTMEK 153 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcchh-----h-------------ccccceEEEEEechHhhhHHHHHHHHHHHHH
Confidence 12334555555544322110 0 012334 5566555532 333334443332
Q ss_pred CCCCcEEEEEecch-HHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHh
Q 045150 301 NKNGSRVIITTRNR-EVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLG 377 (841)
Q Consensus 301 ~~~gs~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 377 (841)
=.+.+|+|+...+. .+........-.+.+...+++|....+++.+-...-.- -.+++.+|+++++|.-.-+-.+.
T Consensus 154 Ys~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p~~~l~rIa~kS~~nLRrAllml 229 (351)
T KOG2035|consen 154 YSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--PKELLKRIAEKSNRNLRRALLML 229 (351)
T ss_pred HhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--cHHHHHHHHHHhcccHHHHHHHH
Confidence 23356666533221 12222222225788899999999998888764333222 26889999999998765443333
No 323
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.18 Score=50.10 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+++|+|..|.|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999986
No 324
>PRK14974 cell division protein FtsY; Provisional
Probab=95.06 E-value=0.23 Score=52.60 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=33.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccC-CCCcEEEEEeCCccC--HHHHHHHHHHHhhh
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKN-KFECCAWVSVSQDYQ--FQYLLLRIIKSFNI 248 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~ 248 (841)
...+|.++|+.|+||||++.+++. ..+. .+ .++.+. ...+. ..+-++..+..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv 196 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGV 196 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCC
Confidence 468999999999999998888876 2332 33 334443 22232 23345555666554
No 325
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.05 E-value=0.015 Score=52.50 Aligned_cols=20 Identities=55% Similarity=0.752 Sum_probs=19.0
Q ss_pred EEEEccCCCcHHHHHHHHhc
Q 045150 194 ISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~ 213 (841)
|.|.|..|+||||+|+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999998
No 326
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.0029 Score=62.35 Aligned_cols=100 Identities=24% Similarity=0.252 Sum_probs=67.9
Q ss_pred ccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccc
Q 045150 507 KRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDM 585 (841)
Q Consensus 507 ~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~ 585 (841)
+.+.+.+.|++.||. +. .+ ..+.+++.|++|.|+-| .|+.+-+ +..+++|+.|+|+ |++..+-.
T Consensus 16 sdl~~vkKLNcwg~~------L~--DI-sic~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldE---- 80 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCG------LD--DI-SICEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDE---- 80 (388)
T ss_pred hHHHHhhhhcccCCC------cc--HH-HHHHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHH----
Confidence 445667888888888 76 23 24557888999999988 6777643 7788889989888 65543322
Q ss_pred cccccceecccccccCCcccccccccccccccc-------hhccccccccCCCceE
Q 045150 586 MRELRHLIGKLIGTLPIENLTNLQTLKYVRCKS-------WIRVNTAKLVNLRELH 634 (841)
Q Consensus 586 L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~~-------~~~~~l~~l~~L~~L~ 634 (841)
|.+ +.++++|++|++..|.. .-...+.-|+||++|+
T Consensus 81 ---L~Y----------LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 81 ---LEY----------LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ---HHH----------HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 222 34678888888887761 1223466677777775
No 327
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.01 E-value=0.11 Score=49.76 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=58.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC--ccCHHHHHHHHHHHhhhccccccCCCCC-------CCH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ--DYQFQYLLLRIIKSFNIISSAEEGGLEN-------KSE 262 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~-------~~~ 262 (841)
.+++|+|..|.|||||.+.+..- .......+++.-.. ...... ..+.++..... + .... .+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q~-~-~~~~~tv~~~lLS~ 99 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL---LRPTSGRVRLDGADISQWDPNE----LGDHVGYLPQD-D-ELFSGSIAENILSG 99 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc---cCCCCCeEEECCEEcccCCHHH----HHhheEEECCC-C-ccccCcHHHHCcCH
Confidence 48999999999999999999873 12223333332110 011111 11111111100 0 0000 111
Q ss_pred -HHHHHHHHHHccCceEEEEEecCCCh---hhHHHHHhhCCC-CCCCcEEEEEecchHHhhc
Q 045150 263 -EDLERCLYKSLQGKTYLMVLDDVWRK---VDWENLRRAFPD-NKNGSRVIITTRNREVAER 319 (841)
Q Consensus 263 -~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~ 319 (841)
+.-.-.+.+.+-.++=++++|+.-.. ..-..+...+.. ...|..||++|.+......
T Consensus 100 G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 161 (173)
T cd03246 100 GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS 161 (173)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 12223455555566668899987532 222233333321 1236678888888776653
No 328
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.99 E-value=0.13 Score=52.67 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=57.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHH-hhhccccccCCCCCCCHHHHHH
Q 045150 189 PRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKS-FNIISSAEEGGLENKSEEDLER 267 (841)
Q Consensus 189 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~~~~~ 267 (841)
+.-+++=|+|+.|.||||+|.+++- ..+..-..++|++.-..+++..+. .+... +..-.-..+. ......++..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~--~~e~q~~i~~ 132 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPD--TGEQQLEIAE 132 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCC--CHHHHHHHHH
Confidence 3568999999999999999999887 344445589999999989887753 33333 2211111011 1111123333
Q ss_pred HHHHHccCceEEEEEecCC
Q 045150 268 CLYKSLQGKTYLMVLDDVW 286 (841)
Q Consensus 268 ~l~~~L~~kr~LlVlDdv~ 286 (841)
.+.+....+--|+|+|.+-
T Consensus 133 ~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 133 KLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHhccCCCCEEEEecCc
Confidence 3333333445699999884
No 329
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.99 E-value=0.11 Score=50.86 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=51.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
+++.|.|.+|.||||+++.+.. .+...=..++++. .... ....+.+..+.... + +...+..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~--~~~~~g~~v~~~a-pT~~----Aa~~L~~~~~~~a~---------T---i~~~l~~ 79 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAE--ALEAAGKRVIGLA-PTNK----AAKELREKTGIEAQ---------T---IHSFLYR 79 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHH--HHHHTT--EEEEE-SSHH----HHHHHHHHHTS-EE---------E---HHHHTTE
T ss_pred eEEEEEECCCCCHHHHHHHHHH--HHHhCCCeEEEEC-CcHH----HHHHHHHhhCcchh---------h---HHHHHhc
Confidence 4788899999999999999887 3333212333433 2221 12222223221110 0 0000000
Q ss_pred Hc---------cCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchH
Q 045150 272 SL---------QGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNRE 315 (841)
Q Consensus 272 ~L---------~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~ 315 (841)
.- ..++-+||+|++.-. ..+..+....+. .|+|+|+.--..+
T Consensus 80 ~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 80 IPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp ECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred CCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 00 123349999999743 466777776654 4678887754433
No 330
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.28 Score=46.88 Aligned_cols=119 Identities=17% Similarity=0.158 Sum_probs=59.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC--ccCHHHHHHHHHHHhhhccccccCCCCC-------CCH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ--DYQFQYLLLRIIKSFNIISSAEEGGLEN-------KSE 262 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~-------~~~ 262 (841)
.+++|+|..|.|||||.+.++.- .......+++.-.. ...... ..+.++..... + .... .+.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~---~~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~-~-~~~~~t~~e~lLS~ 99 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRL---YDPTSGEILIDGVDLRDLDLES----LRKNIAYVPQD-P-FLFSGTIRENILSG 99 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC---CCCCCCEEEECCEEhhhcCHHH----HHhhEEEEcCC-c-hhccchHHHHhhCH
Confidence 48999999999999999999873 22233444432111 001111 11111110000 0 0000 111
Q ss_pred H-HHHHHHHHHccCceEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEecchHHhhc
Q 045150 263 E-DLERCLYKSLQGKTYLMVLDDVWRK---VDWENLRRAFPDNKNGSRVIITTRNREVAER 319 (841)
Q Consensus 263 ~-~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 319 (841)
. .-.-.+.+.+-.++-++++|+-... ...+.+...+.....+..||++|.+......
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1 1222355566667779999987532 2223333333221224678888888766654
No 331
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.97 E-value=0.27 Score=48.98 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.+.-.
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 332
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.96 E-value=0.07 Score=54.18 Aligned_cols=95 Identities=14% Similarity=0.172 Sum_probs=55.1
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccc--cCCCCcEEEEEeCCccC-HHHHHHHHHHHhhhccccc-cCCCCCCC-----HH
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDV--KNKFECCAWVSVSQDYQ-FQYLLLRIIKSFNIISSAE-EGGLENKS-----EE 263 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~-~~~~~~~~-----~~ 263 (841)
-++|.|-.|+|||+|+..+.+...+ +++-+.++++-+.+... ..++..++...=......- -...+... ..
T Consensus 71 R~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~ 150 (276)
T cd01135 71 KIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITP 150 (276)
T ss_pred EEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHH
Confidence 5799999999999999999875321 23357788998887654 3444444433211100000 00000000 11
Q ss_pred HHHHHHHHHc--c-CceEEEEEecCCC
Q 045150 264 DLERCLYKSL--Q-GKTYLMVLDDVWR 287 (841)
Q Consensus 264 ~~~~~l~~~L--~-~kr~LlVlDdv~~ 287 (841)
...-.+.+++ + ++++|+++||+-.
T Consensus 151 ~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 151 RMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1223456666 3 7899999999943
No 333
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.94 E-value=0.23 Score=50.56 Aligned_cols=127 Identities=18% Similarity=0.181 Sum_probs=62.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccc-cCC--CC--cEEEEEeC----CccCHHHHHH--------------HHHHHhhh
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDV-KNK--FE--CCAWVSVS----QDYQFQYLLL--------------RIIKSFNI 248 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~--~~~wv~vs----~~~~~~~~~~--------------~i~~~l~~ 248 (841)
.+++|+|..|+|||||++.+...... .+. ++ .+.++.-. ...++.+.+. ++++.++.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 48999999999999999999874211 111 11 12222211 0112222221 22223222
Q ss_pred ccccccCCCCCCCHHHH-HHHHHHHccCceEEEEEecCCCh---hhHHHHHhhCCCC--CCCcEEEEEecchHHhhc
Q 045150 249 ISSAEEGGLENKSEEDL-ERCLYKSLQGKTYLMVLDDVWRK---VDWENLRRAFPDN--KNGSRVIITTRNREVAER 319 (841)
Q Consensus 249 ~~~~~~~~~~~~~~~~~-~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~ 319 (841)
.... .......+..+. .-.|.+.|-.+.=+++||..-.. ..-..+...+... ..|..||++|.+...+..
T Consensus 106 ~~~~-~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 106 EQIL-DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred HHHh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 1100 011122332332 23456667777789999987532 2222233333221 235668888888765553
No 334
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.91 E-value=0.022 Score=56.39 Aligned_cols=24 Identities=46% Similarity=0.776 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|+|+|.+|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 335
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.90 E-value=0.36 Score=52.69 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|.++|..|+||||+|.+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999998875
No 336
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.89 E-value=0.021 Score=56.78 Aligned_cols=25 Identities=40% Similarity=0.698 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
+..+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999983
No 337
>PRK08233 hypothetical protein; Provisional
Probab=94.88 E-value=0.022 Score=55.12 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcC
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 338
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.86 E-value=1.3 Score=46.17 Aligned_cols=132 Identities=8% Similarity=0.055 Sum_probs=75.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCc---c---ccC--CCCcEEEEEe-CCccCHHHHHHHHHHHhhhccccccCCCCCCC
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSS---D---VKN--KFECCAWVSV-SQDYQFQYLLLRIIKSFNIISSAEEGGLENKS 261 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~---~---~~~--~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 261 (841)
..+..++|..|.||+++|..+.+.- . +.. |=+...++.. ....+.+++. ++.+.+...+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC-----------
Confidence 4677899999999999999887631 0 011 1112333321 1112222211 2222221110
Q ss_pred HHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEec-chHHhhcCCCcceeEecCCCChhHHH
Q 045150 262 EEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTR-NREVAERSDEKTYVHKLRFLRGDESW 338 (841)
Q Consensus 262 ~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~~~~~~~~~~~~l~~L~~~~~~ 338 (841)
+-.+++-++|+|+++.. .....+...+...+.++.+|++|. ...+..........+++.++++++..
T Consensus 86 ----------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~ 155 (299)
T PRK07132 86 ----------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKIL 155 (299)
T ss_pred ----------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHH
Confidence 00157778999998754 456677777776666777776554 44444333333488999999999988
Q ss_pred HHHHhH
Q 045150 339 LLFCEK 344 (841)
Q Consensus 339 ~lf~~~ 344 (841)
+.+...
T Consensus 156 ~~l~~~ 161 (299)
T PRK07132 156 AKLLSK 161 (299)
T ss_pred HHHHHc
Confidence 777653
No 339
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.86 E-value=0.019 Score=45.29 Aligned_cols=21 Identities=52% Similarity=0.713 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+|+|.|..|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 340
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.85 E-value=0.14 Score=52.01 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=35.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLR 241 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 241 (841)
.-+++.|.|.+|.|||++|.++... .. ..-..++||+... ++.++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHH
Confidence 4579999999999999999987652 22 3346788988655 45555554
No 341
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.84 E-value=0.13 Score=60.02 Aligned_cols=130 Identities=16% Similarity=0.139 Sum_probs=69.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
+-|.++|++|.|||++|+.+... ....| +.++.+. + ...... .....+...+..
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~----~~~~~g-----------~~~~~~~~~f~~ 239 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------F----VEMFVG-----------VGASRVRDMFEQ 239 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------h----HHhhhc-----------ccHHHHHHHHHH
Confidence 34899999999999999999883 33333 2222221 1 000000 011223333333
Q ss_pred HccCceEEEEEecCCCh------------hhHH----HHHhhCCC--CCCCcEEEEEecchHHhhcC----CCcceeEec
Q 045150 272 SLQGKTYLMVLDDVWRK------------VDWE----NLRRAFPD--NKNGSRVIITTRNREVAERS----DEKTYVHKL 329 (841)
Q Consensus 272 ~L~~kr~LlVlDdv~~~------------~~~~----~l~~~l~~--~~~gs~ilvTtR~~~v~~~~----~~~~~~~~l 329 (841)
.-...+.+|++|+++.. ..+. .+...+.. ...+.-+|.||...+..... +.-...+.+
T Consensus 240 a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v 319 (644)
T PRK10733 240 AKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVV 319 (644)
T ss_pred HHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEc
Confidence 33456789999999653 1122 22222221 12344455566655432221 111267788
Q ss_pred CCCChhHHHHHHHhHhcC
Q 045150 330 RFLRGDESWLLFCEKAFR 347 (841)
Q Consensus 330 ~~L~~~~~~~lf~~~~~~ 347 (841)
...+.++..+++..+.-.
T Consensus 320 ~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 320 GLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 888888888888776643
No 342
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.83 E-value=0.22 Score=49.72 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.+.--
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 343
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.82 E-value=0.23 Score=49.45 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 344
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.81 E-value=0.29 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.++-.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999874
No 345
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.80 E-value=0.21 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.++.-
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 346
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.76 E-value=0.031 Score=51.64 Aligned_cols=35 Identities=31% Similarity=0.344 Sum_probs=28.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEE
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVS 228 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 228 (841)
.||.|.|.+|.||||||+.+.+ +....-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 5899999999999999999998 5555555566665
No 347
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.075 Score=61.53 Aligned_cols=156 Identities=13% Similarity=0.108 Sum_probs=83.3
Q ss_pred CCCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC---ccccCCC-CcEEE-EEeCCccCHHHHHH
Q 045150 166 EENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS---SDVKNKF-ECCAW-VSVSQDYQFQYLLL 240 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~~~~F-~~~~w-v~vs~~~~~~~~~~ 240 (841)
-+.++||+++++++++.|.....++ -.++|.+|+|||++|.-.++. ..|-... +..++ +.+
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNN---PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~----------- 234 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNN---PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL----------- 234 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCC---CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH-----------
Confidence 4568999999999999999765422 246799999999977666652 0111111 11111 111
Q ss_pred HHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh-----------hhHHHHHhhCCCCCCCcEEEE
Q 045150 241 RIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK-----------VDWENLRRAFPDNKNGSRVII 309 (841)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~ilv 309 (841)
..-..+. .....=++.+...+.+.-+.++..|++|.++.. +.-.-+++++..+. --.|=.
T Consensus 235 --g~LvAGa------kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGA 305 (786)
T COG0542 235 --GSLVAGA------KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGA 305 (786)
T ss_pred --HHHhccc------cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEe
Confidence 0001110 011111233333343333456899999998643 12223444444322 223455
Q ss_pred EecchHHhhc-----CCCcceeEecCCCChhHHHHHHHhH
Q 045150 310 TTRNREVAER-----SDEKTYVHKLRFLRGDESWLLFCEK 344 (841)
Q Consensus 310 TtR~~~v~~~-----~~~~~~~~~l~~L~~~~~~~lf~~~ 344 (841)
||-++.--.. .....+.+.+..-+.+++...+...
T Consensus 306 TT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 306 TTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred ccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 6654432111 0111267888888888888877543
No 348
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.74 E-value=0.093 Score=61.93 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=36.3
Q ss_pred CCCcccCCChHHHHHHHhcC------CCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 167 ENPVGFEDDTDVLLSKLLAG------DEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..++|-++.++.+...+... .......+.++|+.|+|||++|+.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 35788888888888877631 111345789999999999999999987
No 349
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.74 E-value=0.5 Score=56.20 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=36.6
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
..++|....+..+.+.+..-.. .-.-|.|+|..|.|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~-~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ-SDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC-CCCCEEEECCCCcCHHHHHHHHHHh
Confidence 4689999888888776653322 2236889999999999999999974
No 350
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.73 E-value=0.22 Score=49.95 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 351
>PRK04328 hypothetical protein; Provisional
Probab=94.69 E-value=0.12 Score=52.87 Aligned_cols=53 Identities=19% Similarity=0.306 Sum_probs=36.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFN 247 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 247 (841)
.-.++.|.|.+|.|||+||.++... .. ..-..++||+..+ ++.++. +.+++++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee--~~~~i~-~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEE--HPVQVR-RNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeC--CHHHHH-HHHHHcC
Confidence 4579999999999999999997763 22 2345688888766 334433 3344444
No 352
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.69 E-value=0.05 Score=56.12 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 177 DVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 177 ~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+++.+.... +-+.++|..|+|||++++...+
T Consensus 23 ~~ll~~l~~~~----~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSNG----RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHCT----EEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CcEEEECCCCCchhHHHHhhhc
Confidence 44556666543 4578999999999999999886
No 353
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.69 E-value=0.35 Score=49.64 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.+..
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 354
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.68 E-value=0.29 Score=48.65 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||.+.+..-
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 355
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.66 E-value=0.18 Score=50.78 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=29.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ 231 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 231 (841)
.-.++.|.|.+|.||||+|.++... ..+ .-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~-~~~-~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK-GLR-DGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH-HHh-cCCeEEEEEccC
Confidence 3468999999999999999987652 122 335678888644
No 356
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.62 E-value=0.033 Score=50.69 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=32.8
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNII 249 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 249 (841)
+|.|-|.+|.||||+|+.+.++-..+ | .+.-.++++|+++.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCCC
Confidence 68999999999999999999842211 1 23346788888887654
No 357
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.61 E-value=0.016 Score=33.87 Aligned_cols=20 Identities=40% Similarity=0.697 Sum_probs=10.7
Q ss_pred ceeeecCCCcCccccCcccCC
Q 045150 543 LKYLGIRGTTFIRDFPSSIFN 563 (841)
Q Consensus 543 L~~L~L~~~~~~~~lp~~i~~ 563 (841)
|++|+|++| .++.+|+++++
T Consensus 2 L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSS-EESEEGTTTTT
T ss_pred ccEEECCCC-cCEeCChhhcC
Confidence 555666655 44455554443
No 358
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.61 E-value=0.22 Score=46.97 Aligned_cols=120 Identities=17% Similarity=0.101 Sum_probs=64.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcE--EEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCC-------H
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECC--AWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKS-------E 262 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~--~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-------~ 262 (841)
..|-|++..|.||||.|-.+.-. .....+... =|+.-.........+..+ .+..............+ .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHHH
Confidence 47778888999999999888762 223334331 133333233444444442 12111111100011111 1
Q ss_pred HHHHHHHHHHccCceE-EEEEecCCCh-----hhHHHHHhhCCCCCCCcEEEEEecch
Q 045150 263 EDLERCLYKSLQGKTY-LMVLDDVWRK-----VDWENLRRAFPDNKNGSRVIITTRNR 314 (841)
Q Consensus 263 ~~~~~~l~~~L~~kr~-LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~ilvTtR~~ 314 (841)
.+..+..++.+...+| |+|||.+-.. -+.+.+...+.....+.-||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2233344555555454 9999998532 23456666666566677899999975
No 359
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.58 E-value=0.029 Score=61.42 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=38.1
Q ss_pred CCCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 166 EENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
...++|+++.++.+...+..+. -|.|.|.+|+|||++|+.+...
T Consensus 19 ~~~i~gre~vI~lll~aalag~-----hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE-----SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC-----CEEEECCCChhHHHHHHHHHHH
Confidence 3468999999999998888765 3889999999999999999983
No 360
>PRK06762 hypothetical protein; Provisional
Probab=94.55 E-value=0.027 Score=53.62 Aligned_cols=22 Identities=50% Similarity=0.631 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 361
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.57 Score=50.32 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
-|--.++|++|.|||++..++++
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn 257 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMAN 257 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHh
Confidence 46678999999999999999998
No 362
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.54 E-value=0.039 Score=55.63 Aligned_cols=24 Identities=46% Similarity=0.599 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+++|.|..|.|||||++.+..
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987
No 363
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.49 E-value=0.25 Score=50.23 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
|..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567999999999999999976
No 364
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.48 E-value=0.088 Score=54.29 Aligned_cols=41 Identities=29% Similarity=0.310 Sum_probs=35.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQD 232 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 232 (841)
.-+++.|+|.+|.|||++|.++.. ....+...++||+..+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 567999999999999999999998 45556889999998764
No 365
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.48 E-value=0.3 Score=48.98 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.+...
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 366
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.0046 Score=58.31 Aligned_cols=86 Identities=19% Similarity=0.136 Sum_probs=63.1
Q ss_pred CCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEc-cCcc
Q 045150 713 PNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVE-ERAM 791 (841)
Q Consensus 713 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~-~~~~ 791 (841)
..++.++-+++.+......-+.+++.++.|.+.++ ..+.+..+..-.+.+|+|+.|++++|+ .+++-... ...+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c----k~~dD~~L~~l~~~~~~L~~L~lsgC~-rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC----KYFDDWCLERLGGLAPSLQDLDLSGCP-RITDGGLACLLKL 175 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccc----cchhhHHHHHhcccccchheeeccCCC-eechhHHHHHHHh
Confidence 44778888888887777788888999999999664 233333343444578999999999999 88865322 4478
Q ss_pred ccccccccccccC
Q 045150 792 PMLRGLKIPSDIP 804 (841)
Q Consensus 792 p~L~~L~l~~~c~ 804 (841)
++|+.|.|+ +-|
T Consensus 176 knLr~L~l~-~l~ 187 (221)
T KOG3864|consen 176 KNLRRLHLY-DLP 187 (221)
T ss_pred hhhHHHHhc-Cch
Confidence 999999998 544
No 367
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.45 E-value=0.11 Score=53.93 Aligned_cols=136 Identities=18% Similarity=0.288 Sum_probs=70.0
Q ss_pred cCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCc-cccCCCCcEEE----EEeCCcc---------CHHH
Q 045150 172 FEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSS-DVKNKFECCAW----VSVSQDY---------QFQY 237 (841)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~w----v~vs~~~---------~~~~ 237 (841)
|..+..--.++|+++ ....|.+.|.+|.|||.||-+..-.. ..++.|..++= +.+.++. .+.-
T Consensus 229 rn~eQ~~ALdlLld~---dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 229 RNAEQRVALDLLLDD---DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred ccHHHHHHHHHhcCC---CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccc
Confidence 444555555666665 45799999999999999987765321 23344543321 1233221 1111
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHH---------HHccCc---eEEEEEecCCChhhHHHHHhhCCCCCCCc
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLY---------KSLQGK---TYLMVLDDVWRKVDWENLRRAFPDNKNGS 305 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~---------~~L~~k---r~LlVlDdv~~~~~~~~l~~~l~~~~~gs 305 (841)
=++.|..-+..-. ....+....+...+. .+++|+ +-++|+|.+-+.. -.+++..+...+.||
T Consensus 306 Wmq~i~DnLE~L~-----~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT-pheikTiltR~G~Gs 379 (436)
T COG1875 306 WMQAIFDNLEVLF-----SPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT-PHELKTILTRAGEGS 379 (436)
T ss_pred hHHHHHhHHHHHh-----cccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC-HHHHHHHHHhccCCC
Confidence 1111211111100 011111122222211 233454 3589999986542 245666677778899
Q ss_pred EEEEEecchHH
Q 045150 306 RVIITTRNREV 316 (841)
Q Consensus 306 ~ilvTtR~~~v 316 (841)
||+.|--..++
T Consensus 380 KIVl~gd~aQi 390 (436)
T COG1875 380 KIVLTGDPAQI 390 (436)
T ss_pred EEEEcCCHHHc
Confidence 99998754444
No 368
>PRK06547 hypothetical protein; Provisional
Probab=94.44 E-value=0.033 Score=53.07 Aligned_cols=25 Identities=40% Similarity=0.436 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
...+|+|.|.+|+||||+|+.+.+.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999873
No 369
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.43 E-value=0.25 Score=52.94 Aligned_cols=88 Identities=23% Similarity=0.194 Sum_probs=48.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC-ccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ-DYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLY 270 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 270 (841)
.++.++|+.|+||||++.++......+.....+..++... .....+-++...+.++.+... ..+..++...+.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~------~~~~~~l~~~l~ 211 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA------VKDGGDLQLALA 211 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe------cCCcccHHHHHH
Confidence 5899999999999999999987321122223456665322 223344555555555543211 111223333333
Q ss_pred HHccCceEEEEEecCCC
Q 045150 271 KSLQGKTYLMVLDDVWR 287 (841)
Q Consensus 271 ~~L~~kr~LlVlDdv~~ 287 (841)
.+.++ =++++|..-.
T Consensus 212 -~l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 212 -ELRNK-HMVLIDTIGM 226 (374)
T ss_pred -HhcCC-CEEEEcCCCC
Confidence 34444 4566999853
No 370
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.42 E-value=0.14 Score=50.47 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 371
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.41 E-value=0.18 Score=55.39 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=54.2
Q ss_pred EEEEEEccCCCcHHHHH-HHHhcCccc-----cCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccc--cCCCCCCCH-
Q 045150 192 LVISIYGMGGLGKTTLA-KKLYHSSDV-----KNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAE--EGGLENKSE- 262 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~- 262 (841)
.-++|.|-.|+|||+|| -.+.+...+ .++-+.++++-+.+......-+.+.+++-+.-.... ....+....
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 35899999999999997 556664322 134467888888887654333444444433110000 000000000
Q ss_pred ----HHHHHHHHHHc--cCceEEEEEecCCC
Q 045150 263 ----EDLERCLYKSL--QGKTYLMVLDDVWR 287 (841)
Q Consensus 263 ----~~~~~~l~~~L--~~kr~LlVlDdv~~ 287 (841)
.-..-.+.+++ +++.+|+|+||+-.
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11223455565 68999999999954
No 372
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.40 E-value=0.17 Score=51.98 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=29.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ 231 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 231 (841)
.-+++.|.|.+|+|||++|.++... ..+ .=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~-~a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT-QAS-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HHh-CCCcEEEEEecC
Confidence 4479999999999999999998653 222 234678888754
No 373
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.40 E-value=0.029 Score=49.47 Aligned_cols=28 Identities=39% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEEccCCCcHHHHHHHHhcCccccCCCCc
Q 045150 194 ISIYGMGGLGKTTLAKKLYHSSDVKNKFEC 223 (841)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 223 (841)
|.|+|.+|+||||+|+.+.. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 67899999999999999998 56677753
No 374
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.38 E-value=0.27 Score=55.52 Aligned_cols=135 Identities=23% Similarity=0.255 Sum_probs=72.8
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcc-----cc-CCCCcEEEEEeCCc---------------c-C-HHHHHHHHHHHhhhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSD-----VK-NKFECCAWVSVSQD---------------Y-Q-FQYLLLRIIKSFNII 249 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~-----~~-~~F~~~~wv~vs~~---------------~-~-~~~~~~~i~~~l~~~ 249 (841)
-|+|+|+.|+|||||.+.+..... ++ +.--.+.++.-... + + ...-.+..+.+++..
T Consensus 350 riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~ 429 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC
Confidence 689999999999999999955211 11 11111333321110 0 0 133444444444433
Q ss_pred cccccCCCCCCCH-HHHHHHHHHHccCceEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEecchHHhhcCCCcce
Q 045150 250 SSAEEGGLENKSE-EDLERCLYKSLQGKTYLMVLDDVWRK---VDWENLRRAFPDNKNGSRVIITTRNREVAERSDEKTY 325 (841)
Q Consensus 250 ~~~~~~~~~~~~~-~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~ 325 (841)
.......+...+. +...-.+...+-.+.=+||||.--+. +..+.+..++.... |+ ||+.|.++........ .
T Consensus 430 ~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-Gt-vl~VSHDr~Fl~~va~--~ 505 (530)
T COG0488 430 GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-GT-VLLVSHDRYFLDRVAT--R 505 (530)
T ss_pred hHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-Ce-EEEEeCCHHHHHhhcc--e
Confidence 2221112222333 33344556666778889999976443 33344444443222 54 8888999887776543 5
Q ss_pred eEecCC
Q 045150 326 VHKLRF 331 (841)
Q Consensus 326 ~~~l~~ 331 (841)
++.+.+
T Consensus 506 i~~~~~ 511 (530)
T COG0488 506 IWLVED 511 (530)
T ss_pred EEEEcC
Confidence 666654
No 375
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.36 E-value=0.32 Score=49.77 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||.+.++--
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 376
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.34 E-value=0.13 Score=48.42 Aligned_cols=115 Identities=19% Similarity=0.248 Sum_probs=60.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCcc--CHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDY--QFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCL 269 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 269 (841)
.+++|+|..|.|||||++.+... . ......+++...... ...+ ....+.... .+. . .+...-.+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~-----qlS-~-G~~~r~~l 91 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLPLEE----LRRRIGYVP-----QLS-G-GQRQRVAL 91 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCCHHH----HHhceEEEe-----eCC-H-HHHHHHHH
Confidence 48999999999999999999873 2 234455555321111 1111 111111100 000 1 12222335
Q ss_pred HHHccCceEEEEEecCCCh---hhHHHHHhhCCC-CCCCcEEEEEecchHHhhcC
Q 045150 270 YKSLQGKTYLMVLDDVWRK---VDWENLRRAFPD-NKNGSRVIITTRNREVAERS 320 (841)
Q Consensus 270 ~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~~ 320 (841)
.+.+-...-++++|..-.. .....+...+.. ...+..++++|.+.......
T Consensus 92 ~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 92 ARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 5555556788999998532 223333333321 11246688888877665543
No 377
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.32 E-value=0.073 Score=51.23 Aligned_cols=21 Identities=57% Similarity=0.741 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999997
No 378
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.30 E-value=0.18 Score=52.09 Aligned_cols=92 Identities=18% Similarity=0.185 Sum_probs=48.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCH--HHHHHHHHHHhhhccccccCCCCCCCHHH-HH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQF--QYLLLRIIKSFNIISSAEEGGLENKSEED-LE 266 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~ 266 (841)
..+++.++|++|+||||++.+++. .....-..+.+++.. .+.. .+-++..++..+...... . ...+... ..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~--~-~~~dp~~~~~ 144 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQ--K-EGADPAAVAF 144 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeC--C-CCCCHHHHHH
Confidence 457999999999999999998886 333332346666543 2322 233333444444221110 0 0111222 22
Q ss_pred HHHHHHccCceEEEEEecCCC
Q 045150 267 RCLYKSLQGKTYLMVLDDVWR 287 (841)
Q Consensus 267 ~~l~~~L~~kr~LlVlDdv~~ 287 (841)
..+........=++++|-.-.
T Consensus 145 ~~l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 145 DAIQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCCC
Confidence 334333334445788888743
No 379
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.28 E-value=0.28 Score=48.65 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++.|+|..|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37889999999999999999874
No 380
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.28 E-value=0.19 Score=54.37 Aligned_cols=23 Identities=43% Similarity=0.429 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..++.++|.+|+||||+|.++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 381
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.26 E-value=0.41 Score=49.74 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNG 53 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999986
No 382
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.26 E-value=0.13 Score=55.85 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=51.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCH-HHHHHHHHHHhhhccccccCCCCCCC------HHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQF-QYLLLRIIKSFNIISSAEEGGLENKS------EED 264 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~------~~~ 264 (841)
..++|+|..|+|||||++.+++. . ..+.++.+-+.+.... .++..+++..-+.....--....+.. ...
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~--~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRG--T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccC--C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 46999999999999999999873 2 2256666667665433 34444443321110000000000010 111
Q ss_pred HHHHHHHHc--cCceEEEEEecCCC
Q 045150 265 LERCLYKSL--QGKTYLMVLDDVWR 287 (841)
Q Consensus 265 ~~~~l~~~L--~~kr~LlVlDdv~~ 287 (841)
..-.+.+++ +++++|+++||+-.
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcChHH
Confidence 222356666 68999999999943
No 383
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.25 E-value=0.19 Score=51.48 Aligned_cols=20 Identities=40% Similarity=0.717 Sum_probs=18.8
Q ss_pred EEEEccCCCcHHHHHHHHhc
Q 045150 194 ISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~ 213 (841)
|.++|.+|+||||+|+.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 384
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.24 E-value=0.072 Score=48.89 Aligned_cols=42 Identities=29% Similarity=0.278 Sum_probs=30.4
Q ss_pred EEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHH
Q 045150 194 ISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLL 240 (841)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 240 (841)
|.++|..|+|||+||+.+++ .... ...-+.++...+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEecccccccccee
Confidence 67999999999999999998 3311 234456777777777653
No 385
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.37 Score=46.87 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=38.3
Q ss_pred HHHHHHHHHHccCceEEEEEecCCChhhHHH---HHhhCCC-CCCCcEEEEEecchHHhhcCCCc
Q 045150 263 EDLERCLYKSLQGKTYLMVLDDVWRKVDWEN---LRRAFPD-NKNGSRVIITTRNREVAERSDEK 323 (841)
Q Consensus 263 ~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~---l~~~l~~-~~~gs~ilvTtR~~~v~~~~~~~ 323 (841)
+.-...|.+.+--++-+.|||..++--+.+. +...+.. ...|+-+++.|..+.++....+.
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCC
Confidence 3344556666666777999999886433333 2222221 23367788888999998887654
No 386
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.19 E-value=0.37 Score=50.81 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 387
>PRK03839 putative kinase; Provisional
Probab=94.17 E-value=0.033 Score=53.81 Aligned_cols=22 Identities=45% Similarity=0.670 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045150 193 VISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999983
No 388
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.17 E-value=0.08 Score=50.17 Aligned_cols=21 Identities=48% Similarity=0.638 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.|.+.|.+|+||||+|++..+
T Consensus 3 LiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred eEEEecCCCCCchHHHHHHHH
Confidence 577899999999999999987
No 389
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.16 E-value=0.12 Score=55.65 Aligned_cols=53 Identities=26% Similarity=0.188 Sum_probs=35.6
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC
Q 045150 176 TDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ 231 (841)
Q Consensus 176 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 231 (841)
..++-..|..+=. .-.++.|.|.+|+|||||+.+++.. ....-..++|++..+
T Consensus 68 i~eLD~vLgGGi~-~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE 120 (372)
T cd01121 68 IEELDRVLGGGLV-PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE 120 (372)
T ss_pred CHHHHHhhcCCcc-CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc
Confidence 3445555543322 3469999999999999999999873 333334678887544
No 390
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.14 E-value=0.55 Score=45.97 Aligned_cols=20 Identities=25% Similarity=0.487 Sum_probs=18.9
Q ss_pred EEEEEccCCCcHHHHHHHHh
Q 045150 193 VISIYGMGGLGKTTLAKKLY 212 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~ 212 (841)
+++|+|..|.|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999986
No 391
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.12 E-value=0.32 Score=47.85 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||.+.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 392
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.10 E-value=0.53 Score=46.68 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..|+|+|++|+|||||.+.+.-
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999975
No 393
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.08 E-value=0.51 Score=47.33 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.+..-
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 394
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.08 E-value=0.17 Score=53.93 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=35.6
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.++|....+.++.+.+..-.. .-.-|.|+|..|.||+++|+.++.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~-~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP-LDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHHH
Confidence 588988888888887765332 223578999999999999999986
No 395
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.07 E-value=0.4 Score=48.04 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.+.-
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999985
No 396
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.06 E-value=0.041 Score=53.53 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 397
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.00 E-value=0.21 Score=54.48 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=51.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCH-HHHHHHHHHHhhhccccccCCCCCCC------HHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQF-QYLLLRIIKSFNIISSAEEGGLENKS------EED 264 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~------~~~ 264 (841)
..++|+|..|+|||||++.+++.. . -+.++++-+.+.... .+...+.+.+-+.....--....+.. ...
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~--~--~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~ 234 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNA--D--ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAY 234 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc--C--CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHH
Confidence 478999999999999999999732 1 245555666655433 33433333321111000000000110 111
Q ss_pred HHHHHHHHc--cCceEEEEEecCCC
Q 045150 265 LERCLYKSL--QGKTYLMVLDDVWR 287 (841)
Q Consensus 265 ~~~~l~~~L--~~kr~LlVlDdv~~ 287 (841)
..-.+.+++ +++.+|+++||+-.
T Consensus 235 ~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 235 LTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 223356666 68999999999943
No 398
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.98 E-value=0.13 Score=56.68 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=47.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccc---cCC---CCCCCHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAE---EGG---LENKSEEDL 265 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~---~~~~~~~~~ 265 (841)
..++|+|..|.|||||++.+... ... -..++++.--+.-+..++..+.+..-....... ..+ .........
T Consensus 159 q~i~I~G~sG~GKStLl~~I~~~--~~~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~ 235 (438)
T PRK07721 159 QRVGIFAGSGVGKSTLMGMIARN--TSA-DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYT 235 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc--cCC-CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHH
Confidence 58999999999999999998873 221 123444432222234443332221111000000 000 000011222
Q ss_pred HHHHHHHc--cCceEEEEEecCC
Q 045150 266 ERCLYKSL--QGKTYLMVLDDVW 286 (841)
Q Consensus 266 ~~~l~~~L--~~kr~LlVlDdv~ 286 (841)
.-.+.+++ +++++|+++||+-
T Consensus 236 a~~iAEyfr~~g~~Vll~~Dslt 258 (438)
T PRK07721 236 ATAIAEYFRDQGLNVMLMMDSVT 258 (438)
T ss_pred HHHHHHHHHHCCCcEEEEEeChH
Confidence 33456666 6899999999984
No 399
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.97 E-value=0.17 Score=55.09 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=47.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC-ccCHHHHHHHHHHHhhhccccc-cCCCCCCCHH-----H
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ-DYQFQYLLLRIIKSFNIISSAE-EGGLENKSEE-----D 264 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~-----~ 264 (841)
..++|+|..|+|||||++.+... .+. ...++ +.+.+ .-...++..+.+..-+.....- -...+..... .
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~--~~~-~~gvi-~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARN--TDA-DVVVI-ALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCC--CCC-CEEEE-EEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 47899999999999999999873 222 22222 22333 2233444443333211110000 0000010111 1
Q ss_pred HHHHHHHHc--cCceEEEEEecCCC
Q 045150 265 LERCLYKSL--QGKTYLMVLDDVWR 287 (841)
Q Consensus 265 ~~~~l~~~L--~~kr~LlVlDdv~~ 287 (841)
..-.+.+++ +++.+|+++||+-.
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 223356666 68999999999943
No 400
>PRK08149 ATP synthase SpaL; Validated
Probab=93.95 E-value=0.15 Score=55.58 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=50.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCc-cCHHHHHHHHHHHhhhccccc---cCCC---CCCCHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQD-YQFQYLLLRIIKSFNIISSAE---EGGL---ENKSEED 264 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~---~~~~---~~~~~~~ 264 (841)
..++|+|..|+|||||++.++... .-+.++...+... -+..++..+...........- ..+. .......
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 478999999999999999998732 1233333444333 234455555544322110000 0000 0001122
Q ss_pred HHHHHHHHc--cCceEEEEEecCCC
Q 045150 265 LERCLYKSL--QGKTYLMVLDDVWR 287 (841)
Q Consensus 265 ~~~~l~~~L--~~kr~LlVlDdv~~ 287 (841)
....+.+++ ++|++||++||+-.
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccchHH
Confidence 333455666 68999999999943
No 401
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.22 Score=56.77 Aligned_cols=131 Identities=16% Similarity=0.175 Sum_probs=75.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCL 269 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 269 (841)
..+.+.++|++|.|||.||+++++ .....|-.+.+-. ++.... ..+...+....
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~~-------------l~sk~v-----------Gesek~ir~~F 328 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGSE-------------LLSKWV-----------GESEKNIRELF 328 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCHH-------------Hhcccc-----------chHHHHHHHHH
Confidence 456899999999999999999999 4444442221111 111100 01223344444
Q ss_pred HHHccCceEEEEEecCCChh-------------hHHHHHhhCCCCC--CCcEEEEEecchHHhhcC----CCcceeEecC
Q 045150 270 YKSLQGKTYLMVLDDVWRKV-------------DWENLRRAFPDNK--NGSRVIITTRNREVAERS----DEKTYVHKLR 330 (841)
Q Consensus 270 ~~~L~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~~~--~gs~ilvTtR~~~v~~~~----~~~~~~~~l~ 330 (841)
....+..+..|.+|.++..- ...++...+.... .+..||-||-........ +.-...+.+.
T Consensus 329 ~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~ 408 (494)
T COG0464 329 EKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVP 408 (494)
T ss_pred HHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecC
Confidence 44456888999999996421 1223333443222 233344455443332211 1112678888
Q ss_pred CCChhHHHHHHHhHhc
Q 045150 331 FLRGDESWLLFCEKAF 346 (841)
Q Consensus 331 ~L~~~~~~~lf~~~~~ 346 (841)
+-+.++..+.|+.+.-
T Consensus 409 ~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 409 LPDLEERLEIFKIHLR 424 (494)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 8899999999988874
No 402
>PRK06217 hypothetical protein; Validated
Probab=93.90 E-value=0.088 Score=50.97 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045150 193 VISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
-|.|.|.+|.||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999974
No 403
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.89 E-value=0.15 Score=52.31 Aligned_cols=106 Identities=18% Similarity=0.213 Sum_probs=57.2
Q ss_pred cccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhc
Q 045150 170 VGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNII 249 (841)
Q Consensus 170 vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 249 (841)
.|...+..+.+..+.... -.+|.|.|..|.||||+++.+.+. +...-..++.+.-..++....+ .|+..
T Consensus 62 lg~~~~~~~~l~~~~~~~---~GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~~~-----~q~~v- 130 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP---HGIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIPGI-----NQVQV- 130 (264)
T ss_pred cCCCHHHHHHHHHHHhcC---CCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCCCc-----eEEEe-
Confidence 455444444444333322 248999999999999999988762 3221112333332222211110 01100
Q ss_pred cccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChhhHHHH
Q 045150 250 SSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKVDWENL 294 (841)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l 294 (841)
...........++..|+...=.|+++.+.+.+....+
T Consensus 131 --------~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~ 167 (264)
T cd01129 131 --------NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIA 167 (264)
T ss_pred --------CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHH
Confidence 0001123556677788878888999999887754433
No 404
>PRK00625 shikimate kinase; Provisional
Probab=93.89 E-value=0.039 Score=52.58 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.|.++||.|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 405
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.87 E-value=0.32 Score=51.13 Aligned_cols=92 Identities=14% Similarity=0.219 Sum_probs=49.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC-ccCHHHHHHHHHHHhhhccccc-cCCCCCC-----CHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ-DYQFQYLLLRIIKSFNIISSAE-EGGLENK-----SEED 264 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~-----~~~~ 264 (841)
..++|+|..|.|||||.+.+... ... +..+..-+.. .-...+.....+.+-......- ....+.. ....
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~--~~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARG--TTA--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999999973 221 2333344433 2334444444433321110000 0000000 0112
Q ss_pred HHHHHHHHc--cCceEEEEEecCCC
Q 045150 265 LERCLYKSL--QGKTYLMVLDDVWR 287 (841)
Q Consensus 265 ~~~~l~~~L--~~kr~LlVlDdv~~ 287 (841)
..-.+.+++ ++|.+|+++||+-.
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccchH
Confidence 223455565 68999999999843
No 406
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.86 E-value=0.18 Score=54.25 Aligned_cols=111 Identities=15% Similarity=0.153 Sum_probs=62.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
..|.|.|..|.||||+.+.+.+ .+.......++.- .+.. +..... ...+ .... +.. .+.......++.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~ti-Edp~--E~~~~~-~~~~--i~q~---evg-~~~~~~~~~l~~ 190 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMID--YINKNAAGHIITI-EDPI--EYVHRN-KRSL--INQR---EVG-LDTLSFANALRA 190 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEE-cCCh--hhhccC-ccce--EEcc---ccC-CCCcCHHHHHHH
Confidence 5899999999999999999887 3444444555442 2211 100000 0000 0000 011 111235566788
Q ss_pred HccCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchHHh
Q 045150 272 SLQGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNREVA 317 (841)
Q Consensus 272 ~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 317 (841)
.|+..+=.|++|.+.+.+.+...... ...|..|+.|....+..
T Consensus 191 ~lr~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 191 ALREDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred hhccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 88888889999999887766553333 22355566666554443
No 407
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.85 E-value=0.039 Score=52.86 Aligned_cols=24 Identities=50% Similarity=0.625 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcC
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
..+|+|-||=|+||||||+...+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999984
No 408
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.80 E-value=0.37 Score=48.69 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999874
No 409
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.80 E-value=0.11 Score=50.21 Aligned_cols=44 Identities=32% Similarity=0.258 Sum_probs=34.8
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.++||-++.++.+.-.-.++ +..-+.|.||+|+||||-+...++
T Consensus 27 ~dIVGNe~tv~rl~via~~g---nmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG---NMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC---CCCceEeeCCCCCchhhHHHHHHH
Confidence 46899998888886665554 345688999999999998877776
No 410
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.80 E-value=0.32 Score=50.65 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||.+.++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G 55 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDG 55 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 411
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.79 E-value=0.031 Score=48.56 Aligned_cols=21 Identities=57% Similarity=0.825 Sum_probs=18.7
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 045150 194 ISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~~ 214 (841)
|-|+|.+|+|||++|+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998873
No 412
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.78 E-value=0.1 Score=45.91 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=31.6
Q ss_pred CCcccCCChHHHHH----HHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 168 NPVGFEDDTDVLLS----KLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 168 ~~vGr~~~~~~l~~----~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.++|-.-..+.+.+ .+.......+-|++.+|..|+|||.+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 35554444444444 444444446789999999999999988777764
No 413
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.78 E-value=0.17 Score=51.37 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=52.7
Q ss_pred EEEEEccCCCcHHHHH-HHHhcCccccCCCCcE-EEEEeCCccC-HHHHHHHHHHHhhhccccccCCCCCCC-HH-----
Q 045150 193 VISIYGMGGLGKTTLA-KKLYHSSDVKNKFECC-AWVSVSQDYQ-FQYLLLRIIKSFNIISSAEEGGLENKS-EE----- 263 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~----- 263 (841)
-++|.|..|+|||+|| ..+.+. . +-+.+ +++-+.+... ..++.+++...=......--....++. ..
T Consensus 71 r~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~ 146 (274)
T cd01132 71 RELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAP 146 (274)
T ss_pred EEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHH
Confidence 5899999999999996 666652 1 23444 6666666543 344444443321110000000000010 01
Q ss_pred HHHHHHHHHc--cCceEEEEEecCCCh-hhHHHHHhh
Q 045150 264 DLERCLYKSL--QGKTYLMVLDDVWRK-VDWENLRRA 297 (841)
Q Consensus 264 ~~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~~~ 297 (841)
...-.+.+++ +++.+|+|+||+-.. ..+.++...
T Consensus 147 ~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~ 183 (274)
T cd01132 147 YTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLL 183 (274)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHh
Confidence 1123345555 689999999999543 345554433
No 414
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.77 E-value=1.5 Score=45.22 Aligned_cols=129 Identities=11% Similarity=0.060 Sum_probs=69.5
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCcccc-----------CCCCcEEEEEeCCccCHHHHHHHHHH
Q 045150 176 TDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVK-----------NKFECCAWVSVSQDYQFQYLLLRIIK 244 (841)
Q Consensus 176 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----------~~F~~~~wv~vs~~~~~~~~~~~i~~ 244 (841)
.+++...+..+. -.....++|+.|+||+++|..+...---. +..+-..|+.
T Consensus 6 ~~~L~~~i~~~r--l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~---------------- 67 (290)
T PRK05917 6 WEALIQRVRDQK--VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFS---------------- 67 (290)
T ss_pred HHHHHHHHHcCC--cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEe----------------
Confidence 345555555543 24578899999999999998887621000 0011111111
Q ss_pred HhhhccccccCCC-CCCCHHHHHHHHHHHc-----cCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc-hH
Q 045150 245 SFNIISSAEEGGL-ENKSEEDLERCLYKSL-----QGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRN-RE 315 (841)
Q Consensus 245 ~l~~~~~~~~~~~-~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~-~~ 315 (841)
|.+- .....++..+ +.+.+ .+++-++|+|+++.. +.+..+...+-....++.+|++|.+ ..
T Consensus 68 ---------p~~~~~~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ 137 (290)
T PRK05917 68 ---------PQGKGRLHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQR 137 (290)
T ss_pred ---------cCCCCCcCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhh
Confidence 0000 0112233322 22222 356678899999754 5777887777665556666655555 44
Q ss_pred HhhcCCCcceeEecCCC
Q 045150 316 VAERSDEKTYVHKLRFL 332 (841)
Q Consensus 316 v~~~~~~~~~~~~l~~L 332 (841)
+..........+.+.++
T Consensus 138 ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 138 LPPTIRSRSLSIHIPME 154 (290)
T ss_pred CcHHHHhcceEEEccch
Confidence 44333322356666654
No 415
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.77 E-value=0.1 Score=51.38 Aligned_cols=90 Identities=14% Similarity=0.252 Sum_probs=49.6
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCcc-CHHHHHHHHHHHhhhccccccCCCCCCCH-H-----HH
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDY-QFQYLLLRIIKSFNIISSAEEGGLENKSE-E-----DL 265 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~-----~~ 265 (841)
-++|.|..|+|||+|++.+.+.. .-+.++++-+.+.. ...++.+++...=......--....++.. . ..
T Consensus 17 r~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~ 92 (215)
T PF00006_consen 17 RIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYT 92 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHH
T ss_pred EEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhcc
Confidence 58999999999999999998842 23445777777653 33444444422200000000000001110 1 11
Q ss_pred HHHHHHHc--cCceEEEEEecCC
Q 045150 266 ERCLYKSL--QGKTYLMVLDDVW 286 (841)
Q Consensus 266 ~~~l~~~L--~~kr~LlVlDdv~ 286 (841)
.-.+.+++ +++.+|+++||+-
T Consensus 93 a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 93 ALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHTTSEEEEEEETHH
T ss_pred chhhhHHHhhcCCceeehhhhhH
Confidence 12234444 7999999999993
No 416
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.76 E-value=0.11 Score=55.95 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=33.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCC---CcEEEEEe-CCccCHHHHHHHHHHHh
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKF---ECCAWVSV-SQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~v-s~~~~~~~~~~~i~~~l 246 (841)
.+-|.++|++|+|||++|+.+.. .....| +..-+... ....+.+.+++.+....
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAA 104 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCcccCCHHHHHHHHHHHH
Confidence 36788999999999999999998 344333 22212221 11225566666655554
No 417
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.74 E-value=0.23 Score=52.93 Aligned_cols=45 Identities=20% Similarity=0.143 Sum_probs=32.2
Q ss_pred CcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 169 PVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 169 ~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
+||....+.++.+.+..-.. .-.-|.|+|..|.||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~-~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP-LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC-CCCCEEEECCCCChHHHHHHHHHHh
Confidence 35666666666666654322 2235789999999999999999873
No 418
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.73 E-value=0.29 Score=54.50 Aligned_cols=118 Identities=18% Similarity=0.274 Sum_probs=65.5
Q ss_pred EEEEEEccCCCcHHH-HHHHHhcCccccCCCCcEEEEEeCCccC--HHHHHHHHHHHhhhcccccc------CC------
Q 045150 192 LVISIYGMGGLGKTT-LAKKLYHSSDVKNKFECCAWVSVSQDYQ--FQYLLLRIIKSFNIISSAEE------GG------ 256 (841)
Q Consensus 192 ~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~------~~------ 256 (841)
.||.|+|..|.|||| |||..|.| .|..---|-+.|+-. ...+.+.+.++++....... .+
T Consensus 372 ~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T 446 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDT 446 (1042)
T ss_pred cEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCce
Confidence 599999999999987 77877875 222111344455433 44567788888865432210 01
Q ss_pred -CCCCCHH-HHHHHHHHHccCceEEEEEecCCChhh-HHH----HHhhCCCCCCCcEEEEEecchH
Q 045150 257 -LENKSEE-DLERCLYKSLQGKTYLMVLDDVWRKVD-WEN----LRRAFPDNKNGSRVIITTRNRE 315 (841)
Q Consensus 257 -~~~~~~~-~~~~~l~~~L~~kr~LlVlDdv~~~~~-~~~----l~~~l~~~~~gs~ilvTtR~~~ 315 (841)
+.-|+.. -+.+.|.+..-.|=-.||+|.+.+... -+- ++..+. ....-|+||||-..+
T Consensus 447 ~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlKliVtSATm~ 511 (1042)
T KOG0924|consen 447 KIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLKLIVTSATMD 511 (1042)
T ss_pred eEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhccceEEEeecccc
Confidence 1112222 223334443334556899999976532 112 222222 233678999986543
No 419
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.73 E-value=0.35 Score=51.70 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|+.|.|||||++.+..-
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 420
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.73 E-value=0.092 Score=53.90 Aligned_cols=22 Identities=41% Similarity=0.450 Sum_probs=17.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..|.|.|.+|+||||+|+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 3688999999999999999988
No 421
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.72 E-value=0.037 Score=55.21 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 422
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.71 E-value=0.039 Score=53.10 Aligned_cols=22 Identities=45% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045150 193 VISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999883
No 423
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.69 E-value=0.039 Score=54.27 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+|+|.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 424
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.68 E-value=0.061 Score=48.33 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+|.+.|.-|.||||+++.+.+.
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999999984
No 425
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.66 E-value=0.4 Score=48.61 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||.+.+.-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 426
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.65 E-value=0.56 Score=53.51 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=38.8
Q ss_pred CCCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 166 EENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
...++|....+.++.+.+..-.. .-.-|.|+|..|+|||++|+.+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~-~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA-SDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC-CCCcEEEECCCCccHHHHHHHHHHh
Confidence 45789999999888888775432 2346889999999999999999984
No 427
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.61 E-value=0.11 Score=57.07 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=54.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccC-HHHHHHHHHHHhhhccccccCCCCCCC------HHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQ-FQYLLLRIIKSFNIISSAEEGGLENKS------EED 264 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~------~~~ 264 (841)
.-++|.|.+|+|||||+.++.+... +.+-+.++++-+.+... ..++..++...=......--....+.. ...
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 3689999999999999998887422 23567788887776543 344444443321110000000000110 112
Q ss_pred HHHHHHHHc--c-CceEEEEEecCC
Q 045150 265 LERCLYKSL--Q-GKTYLMVLDDVW 286 (841)
Q Consensus 265 ~~~~l~~~L--~-~kr~LlVlDdv~ 286 (841)
..-.+.+++ + ++++|+++||+-
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccch
Confidence 233466776 3 899999999994
No 428
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.60 E-value=0.36 Score=47.21 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|.|..|.|||||.+.+..
T Consensus 36 e~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 429
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.60 E-value=0.049 Score=53.73 Aligned_cols=63 Identities=19% Similarity=0.317 Sum_probs=39.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEE-------EeCCccCHHHH--HHHHHHHhhhcccc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWV-------SVSQDYQFQYL--LLRIIKSFNIISSA 252 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~vs~~~~~~~~--~~~i~~~l~~~~~~ 252 (841)
+...|.++||+|.||||..|..+.+..-+..=.+++=+ ...-..++++. .++.++|.+..+.+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 45688999999999999999999852222221223222 11223455554 56778887765443
No 430
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.60 E-value=0.089 Score=55.15 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=35.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLR 241 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 241 (841)
.+++.+.|.||+||||+|-+..- ........+.-|++....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999998655 23333355777777666666665543
No 431
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.59 E-value=0.21 Score=52.22 Aligned_cols=90 Identities=21% Similarity=0.275 Sum_probs=53.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCL 269 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 269 (841)
.-+++-|+|..|+||||||..+.. ..+..-..++||.....+++.. +++++.+...--- ......++..+.+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv-~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLV-VQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEE-EE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEE-ecCCcHHHHHHHH
Confidence 446999999999999999999987 4544556699999888776644 4455543221100 0011235555666
Q ss_pred HHHccC-ceEEEEEecCCC
Q 045150 270 YKSLQG-KTYLMVLDDVWR 287 (841)
Q Consensus 270 ~~~L~~-kr~LlVlDdv~~ 287 (841)
.+.++. .--++|+|.|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 666643 445889999854
No 432
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.58 E-value=0.28 Score=55.42 Aligned_cols=66 Identities=21% Similarity=0.116 Sum_probs=42.6
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 045150 176 TDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFN 247 (841)
Q Consensus 176 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 247 (841)
...+-+.|..+= +.-+++.|.|.+|+|||||+.++... ...+=+.+++++..+ +..++.+.+ +.++
T Consensus 249 i~~lD~~lgGG~-~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg 314 (484)
T TIGR02655 249 VVRLDEMCGGGF-FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRNA-YSWG 314 (484)
T ss_pred hHhHHHHhcCCc-cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHHH-HHcC
Confidence 445555555432 24579999999999999999999873 323335677777554 445555443 4444
No 433
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.58 E-value=0.065 Score=50.64 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4569999999999999999999973
No 434
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.57 E-value=0.052 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.++.|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998773
No 435
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.54 E-value=0.051 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...|.|+|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999998
No 436
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=93.53 E-value=0.67 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||.+.++..
T Consensus 28 e~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 28 NRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 437
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.52 E-value=0.89 Score=49.66 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
-.+++++|..|+||||++.++..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999988765
No 438
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.51 E-value=0.49 Score=51.22 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=50.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCcccc--CCCCcEEEEEeCCccCH--HHHHHHHHHHhhhccccccCCCCCCCHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVK--NKFECCAWVSVSQDYQF--QYLLLRIIKSFNIISSAEEGGLENKSEEDL 265 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 265 (841)
...+|.++|..|+||||.+.+++..-... .+-..+..+++. ++.. ..-++..++.++.+... ..+.+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~------~~~~~~l 245 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKA------IESFKDL 245 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEe------eCcHHHH
Confidence 35799999999999999999888631111 112245555543 3332 23355555555443211 1223445
Q ss_pred HHHHHHHccCceEEEEEecCCC
Q 045150 266 ERCLYKSLQGKTYLMVLDDVWR 287 (841)
Q Consensus 266 ~~~l~~~L~~kr~LlVlDdv~~ 287 (841)
...+.+. .+.=++++|.+..
T Consensus 246 ~~~L~~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 246 KEEITQS--KDFDLVLVDTIGK 265 (388)
T ss_pred HHHHHHh--CCCCEEEEcCCCC
Confidence 4444443 3456889998853
No 439
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.48 E-value=1.7 Score=49.33 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=36.0
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
..++|....+.++...+..-.. .-..|.|.|.+|.|||++|+.+.+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~-~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR-SSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc-cCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 3588988888877776654322 2345789999999999999999984
No 440
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.47 E-value=0.099 Score=54.08 Aligned_cols=79 Identities=22% Similarity=0.161 Sum_probs=42.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCC--CcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKF--ECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLER 267 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 267 (841)
.+.+|+|.|..|+||||+|+.+.. ...... ..+..++...-+.....+. +.+... ......+.+...+..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~----~~g~~~--~~g~P~s~D~~~l~~ 132 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLK----ERNLMK--KKGFPESYDMHRLVK 132 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHH----HcCCcc--ccCCChhccHHHHHH
Confidence 567999999999999999987754 222111 1244454433332222222 222111 011234456666666
Q ss_pred HHHHHccCc
Q 045150 268 CLYKSLQGK 276 (841)
Q Consensus 268 ~l~~~L~~k 276 (841)
.+.+.-.++
T Consensus 133 ~L~~Lk~g~ 141 (290)
T TIGR00554 133 FLSDLKSGK 141 (290)
T ss_pred HHHHHHCCC
Confidence 666655544
No 441
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.46 E-value=0.76 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.+.-.
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 442
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.44 E-value=0.42 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.+..
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~G 53 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINL 53 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999986
No 443
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.44 E-value=0.058 Score=49.30 Aligned_cols=21 Identities=43% Similarity=0.699 Sum_probs=19.4
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 045150 194 ISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~~ 214 (841)
|+|+|+.|+|||||++.+.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999983
No 444
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.44 E-value=0.16 Score=55.42 Aligned_cols=92 Identities=13% Similarity=0.158 Sum_probs=49.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCc-cCHHHHHHHHHHHhhhccccc-cCCCCCCCH-----HH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQD-YQFQYLLLRIIKSFNIISSAE-EGGLENKSE-----ED 264 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~-----~~ 264 (841)
..++|+|..|.|||||++.+.+.. +.+..+++.+.+. ..+.+.+.+....=....... -...+.... ..
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~ 231 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF 231 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHH
Confidence 478999999999999999998732 2344555555543 233344443321100000000 000000001 11
Q ss_pred HHHHHHHHc--cCceEEEEEecCCC
Q 045150 265 LERCLYKSL--QGKTYLMVLDDVWR 287 (841)
Q Consensus 265 ~~~~l~~~L--~~kr~LlVlDdv~~ 287 (841)
..-.+.+++ +++++|+++||+-.
T Consensus 232 ~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 232 VATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 223456666 68999999999943
No 445
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.43 E-value=0.11 Score=50.60 Aligned_cols=42 Identities=31% Similarity=0.331 Sum_probs=27.0
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCH
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQF 235 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 235 (841)
.|+|+|.||+||||+|...... ....+=..+.=|....+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYNVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCceEEEEeCCCCCCh
Confidence 5899999999999999885442 22233123444555555554
No 446
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.43 E-value=0.046 Score=53.00 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 447
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.42 E-value=0.77 Score=48.50 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||.+.+..-
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 448
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.41 E-value=0.14 Score=56.80 Aligned_cols=91 Identities=22% Similarity=0.157 Sum_probs=48.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccc-CCCCcEE-EEEeCCccCHHHHHHHHHHHhhhccccccCCCC---CCCHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVK-NKFECCA-WVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLE---NKSEEDLE 266 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~-wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~~~~~ 266 (841)
.-..|+|.+|+|||||++.|.+. +. .+-++.+ .+-|.+..... .++-+.+....-....+.. ......+.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~--i~~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a~~a 491 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANA--ITTNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVAELA 491 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHH--HhhcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHHHHH
Confidence 35789999999999999999983 32 2334433 33455433221 2233333111000000000 00112233
Q ss_pred HHHHHHc--cCceEEEEEecCCC
Q 045150 267 RCLYKSL--QGKTYLMVLDDVWR 287 (841)
Q Consensus 267 ~~l~~~L--~~kr~LlVlDdv~~ 287 (841)
-.+.+++ .++.+||++|++-.
T Consensus 492 i~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 492 IERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHcCCCEEEEEeCchH
Confidence 3455666 78999999999943
No 449
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.41 E-value=0.19 Score=55.72 Aligned_cols=23 Identities=43% Similarity=0.462 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
-.+|+|+|.+|+||||++.++..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999988876
No 450
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.40 E-value=0.79 Score=46.63 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||.+.++-.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 451
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.38 E-value=0.27 Score=57.59 Aligned_cols=102 Identities=22% Similarity=0.195 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCC
Q 045150 177 DVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGG 256 (841)
Q Consensus 177 ~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 256 (841)
..+-.+|..+.-+.-+++-|.|..|+||||||..++.. ....=..++||.....++.. .+++++.....-- -
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~ll-v 117 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLL-V 117 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeE-E
Confidence 34445554233234578999999999999999886652 22333568999987777743 5667665432110 0
Q ss_pred CCCCCHHHHHHHHHHHcc-CceEEEEEecCC
Q 045150 257 LENKSEEDLERCLYKSLQ-GKTYLMVLDDVW 286 (841)
Q Consensus 257 ~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~ 286 (841)
....+.++....+...++ ++--|||+|.+-
T Consensus 118 ~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 118 SQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred ecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 011223455555666664 456689999984
No 452
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=93.37 E-value=0.22 Score=45.66 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=29.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV 229 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 229 (841)
--+.|+|-||+||+++.|.+|.- -....|...+||+.
T Consensus 21 iK~vivGng~VGKssmiqryCkg-ifTkdykktIgvdf 57 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDF 57 (246)
T ss_pred EEEEEECCCccchHHHHHHHhcc-ccccccccccchhh
Confidence 34689999999999999999974 33456777888863
No 453
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.37 E-value=0.17 Score=55.27 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=63.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCC------CHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENK------SEEDL 265 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~------~~~~~ 265 (841)
..++|+|..|.|||||++.++.... . ...++.+.-.+.....+.++..+..-+.....--....+. .....
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~~--~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~ 233 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNAK--A-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKL 233 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccCC--C-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHH
Confidence 4789999999999999999987422 1 1223333222335555665555544221110000000001 11223
Q ss_pred HHHHHHHc--cCceEEEEEecCCCh-hhHHHHHhh---CCCCCCCcEEEEEecchHHhhc
Q 045150 266 ERCLYKSL--QGKTYLMVLDDVWRK-VDWENLRRA---FPDNKNGSRVIITTRNREVAER 319 (841)
Q Consensus 266 ~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~~~---l~~~~~gs~ilvTtR~~~v~~~ 319 (841)
...+.+++ +++..|+++||+-.. +....+... .|.. |--..+.|....+.+.
T Consensus 234 a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~--G~~~~~~s~l~~L~ER 291 (432)
T PRK06793 234 ATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIG--GKTLLMESYMKKLLER 291 (432)
T ss_pred HHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCC--CeeeeeeccchhHHHH
Confidence 33455666 689999999999543 223333322 3322 4445555544444443
No 454
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.36 E-value=0.25 Score=50.77 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=48.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccc-cCCCCCCCHHHHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAE-EGGLENKSEEDLERC 268 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~ 268 (841)
+..++.|+|..|+|||||+..+.+ ..+.... ++.+. ....+..+ .+.++..+.+..+- ....-..+...+...
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~-~~VI~-gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLM--RLKDSVP-CAVIE-GDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhccCCC-EEEEC-CCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 578999999999999999999988 4444432 33332 12122222 12233333221111 001112233444455
Q ss_pred HHHHccCceEEEEEecCCC
Q 045150 269 LYKSLQGKTYLMVLDDVWR 287 (841)
Q Consensus 269 l~~~L~~kr~LlVlDdv~~ 287 (841)
+...-....=++|++++.+
T Consensus 177 l~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 177 APRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHhhcCCcEEEEECCCC
Confidence 5554434446778899864
No 455
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.35 E-value=0.24 Score=54.28 Aligned_cols=92 Identities=12% Similarity=0.169 Sum_probs=49.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCcc-CHHHHHHHHHHHhhhccccc-cCCCCCCCH-----HH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDY-QFQYLLLRIIKSFNIISSAE-EGGLENKSE-----ED 264 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~-----~~ 264 (841)
..++|+|..|.|||||++.+.... ..+.++...+.... ...++...+...-......- ....+.... ..
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~ 244 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAM 244 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHH
Confidence 479999999999999999998731 12344444444433 23344433333211110000 000011111 11
Q ss_pred HHHHHHHHc--cCceEEEEEecCCC
Q 045150 265 LERCLYKSL--QGKTYLMVLDDVWR 287 (841)
Q Consensus 265 ~~~~l~~~L--~~kr~LlVlDdv~~ 287 (841)
..-.+.+|+ +++++|+++||+-.
T Consensus 245 ~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 245 YCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHCCCCEEEEecchhH
Confidence 223456666 68999999999944
No 456
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.35 E-value=0.23 Score=54.49 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=52.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccC-HHHHHHHHHHHhhhccccccCCCCCCC-H-----HH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQ-FQYLLLRIIKSFNIISSAEEGGLENKS-E-----ED 264 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~-~-----~~ 264 (841)
.-++|.|..|+|||||+.++....... +=+.++++-+.+... +.+++.++...=......--....++. . ..
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 368999999999999999887632111 114577777766543 344555444321110000000000111 1 12
Q ss_pred HHHHHHHHc---cCceEEEEEecCC
Q 045150 265 LERCLYKSL---QGKTYLMVLDDVW 286 (841)
Q Consensus 265 ~~~~l~~~L---~~kr~LlVlDdv~ 286 (841)
..-.+.+++ +++++||++||+-
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchH
Confidence 233466776 6899999999994
No 457
>PRK05922 type III secretion system ATPase; Validated
Probab=93.35 E-value=0.21 Score=54.45 Aligned_cols=92 Identities=13% Similarity=0.158 Sum_probs=48.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCcc-CHHHHHHHHHHHhhhccccccCCCCCC------CHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDY-QFQYLLLRIIKSFNIISSAEEGGLENK------SEED 264 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~------~~~~ 264 (841)
..++|+|..|+|||||.+.+.... ..+....+-+++.. ...+.+.+...........--....+. ....
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 368999999999999999998732 22333443333322 223333333322211110000000000 0112
Q ss_pred HHHHHHHHc--cCceEEEEEecCCC
Q 045150 265 LERCLYKSL--QGKTYLMVLDDVWR 287 (841)
Q Consensus 265 ~~~~l~~~L--~~kr~LlVlDdv~~ 287 (841)
..-.+.+++ +++++|+++||+-.
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 233456666 68999999999943
No 458
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.35 E-value=0.076 Score=48.59 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=27.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ 231 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 231 (841)
.+|.|+|..|+|||||++.+.+. -.+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~-l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE-LKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH-HHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HhHcCCceEEEEEccC
Confidence 37999999999999999999983 2335666666666544
No 459
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.33 E-value=0.062 Score=51.90 Aligned_cols=22 Identities=50% Similarity=0.742 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
++|+|+|+.|+||||||+.+++
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999998
No 460
>PRK15453 phosphoribulokinase; Provisional
Probab=93.29 E-value=0.44 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|+|.|-+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999886
No 461
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.28 E-value=0.19 Score=55.06 Aligned_cols=93 Identities=13% Similarity=0.164 Sum_probs=48.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccc---cCCCC---CCCHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAE---EGGLE---NKSEEDL 265 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~---~~~~~~~ 265 (841)
..++|.|..|.|||||++.+...... -..+++..-.+.....+..+.+...-......- ..+.. .......
T Consensus 164 q~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~ 240 (441)
T PRK09099 164 QRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYV 240 (441)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHH
Confidence 47899999999999999999874221 123443332333334444444432211100000 00000 0001122
Q ss_pred HHHHHHHc--cCceEEEEEecCCC
Q 045150 266 ERCLYKSL--QGKTYLMVLDDVWR 287 (841)
Q Consensus 266 ~~~l~~~L--~~kr~LlVlDdv~~ 287 (841)
.-.+.+++ +++.+|+++||+-.
T Consensus 241 a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 241 ATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHcCCCEEEeccchhH
Confidence 33456666 68999999999943
No 462
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=93.25 E-value=0.45 Score=52.28 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=47.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCc-cCHHHHHHHHHHHhhhccccccCCCCCCCH------HH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQD-YQFQYLLLRIIKSFNIISSAEEGGLENKSE------ED 264 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~------~~ 264 (841)
..++|+|..|.|||||.+.+... .. -+....+.+... ....+...+....-......--........ ..
T Consensus 146 q~~~I~G~sG~GKStLl~~I~~~--~~--~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~ 221 (422)
T TIGR02546 146 QRIGIFAGAGVGKSTLLGMIARG--AS--ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAY 221 (422)
T ss_pred CEEEEECCCCCChHHHHHHHhCC--CC--CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHH
Confidence 47899999999999999999983 22 233333444332 333344333322211100000000001111 11
Q ss_pred HHHHHHHHc--cCceEEEEEecCCC
Q 045150 265 LERCLYKSL--QGKTYLMVLDDVWR 287 (841)
Q Consensus 265 ~~~~l~~~L--~~kr~LlVlDdv~~ 287 (841)
..-.+.+++ ++++.|+++||+-.
T Consensus 222 ~a~~~AE~f~~~g~~Vl~~~Dsltr 246 (422)
T TIGR02546 222 TATAIAEYFRDQGKRVLLMMDSLTR 246 (422)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCchH
Confidence 222345555 67899999999953
No 463
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=93.22 E-value=0.75 Score=49.64 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.++--
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 464
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.21 E-value=0.058 Score=51.57 Aligned_cols=22 Identities=55% Similarity=0.622 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045150 193 VISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999984
No 465
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.21 E-value=0.22 Score=52.70 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.8
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 045150 194 ISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~~ 214 (841)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999873
No 466
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.20 E-value=0.057 Score=50.35 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045150 193 VISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999883
No 467
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.17 E-value=0.14 Score=54.90 Aligned_cols=69 Identities=28% Similarity=0.262 Sum_probs=50.6
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKS 245 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 245 (841)
..++|.++....+...+..+. -+.+.|.+|+|||+||+.+.. .... ..++|.+.......+++....-.
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~-----~vll~G~PG~gKT~la~~lA~--~l~~---~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG-----HVLLEGPPGVGKTLLARALAR--ALGL---PFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC-----CEEEECCCCccHHHHHHHHHH--HhCC---CeEEEecCCCCCHHHhcCchhHh
Confidence 348888888877777777665 378999999999999999998 3442 34667777777777765544333
No 468
>PRK05439 pantothenate kinase; Provisional
Probab=93.13 E-value=0.094 Score=54.68 Aligned_cols=80 Identities=21% Similarity=0.147 Sum_probs=43.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCC--CCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNK--FECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLER 267 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 267 (841)
..-+|+|.|.+|+||||+|+.+.. ..... -..+.-|+...-+.....+. +-+.... .....+.+.+.+..
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~----~~~l~~~--kg~Pes~D~~~l~~ 156 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLE----ERGLMKR--KGFPESYDMRALLR 156 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHh----hhhcccc--CCCcccccHHHHHH
Confidence 568999999999999999998887 33322 12344454444333333222 1111000 00123345566666
Q ss_pred HHHHHccCce
Q 045150 268 CLYKSLQGKT 277 (841)
Q Consensus 268 ~l~~~L~~kr 277 (841)
.|.+...++.
T Consensus 157 ~L~~Lk~G~~ 166 (311)
T PRK05439 157 FLSDVKSGKP 166 (311)
T ss_pred HHHHHHcCCC
Confidence 6666665554
No 469
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.12 E-value=0.44 Score=50.31 Aligned_cols=25 Identities=44% Similarity=0.678 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
...+++++|++|+||||++.+++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999999873
No 470
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.12 E-value=0.54 Score=54.95 Aligned_cols=24 Identities=38% Similarity=0.456 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcC
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
-.|++++|+.|+||||.+.++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 369999999999999999988873
No 471
>PRK13947 shikimate kinase; Provisional
Probab=93.11 E-value=0.06 Score=51.50 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999988
No 472
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.11 E-value=0.076 Score=51.42 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=28.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEE
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVS 228 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 228 (841)
+++.|+|+.|+|||||++.+.. ....+|..+++.+
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 5789999999999999999998 5667776555554
No 473
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=93.10 E-value=0.75 Score=49.72 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.++--
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl 46 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGL 46 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 474
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.09 E-value=0.24 Score=54.12 Aligned_cols=92 Identities=11% Similarity=0.185 Sum_probs=47.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCc-cCHHHHHHHHHHHhhhcccc---ccCCC---CCCCHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQD-YQFQYLLLRIIKSFNIISSA---EEGGL---ENKSEED 264 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~---~~~~~---~~~~~~~ 264 (841)
..++|+|..|+|||||++.+.... ..+..+...+... -...+...+.+.+-+..... .+.+. .......
T Consensus 156 Q~igI~G~sGaGKSTLl~~I~g~~----~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e 231 (434)
T PRK07196 156 QRVGLMAGSGVGKSVLLGMITRYT----QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATE 231 (434)
T ss_pred eEEEEECCCCCCccHHHHHHhccc----CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHH
Confidence 579999999999999999988732 1223322333321 22233332333222211000 01110 1111223
Q ss_pred HHHHHHHHc--cCceEEEEEecCCC
Q 045150 265 LERCLYKSL--QGKTYLMVLDDVWR 287 (841)
Q Consensus 265 ~~~~l~~~L--~~kr~LlVlDdv~~ 287 (841)
....+.+++ +++.+|+++||+-.
T Consensus 232 ~a~~iAEyfr~~g~~Vll~~Dsltr 256 (434)
T PRK07196 232 LCHAIATYYRDKGHDVLLLVDSLTR 256 (434)
T ss_pred HHHHHHHHhhhccCCEEEeecchhH
Confidence 334455555 68999999999943
No 475
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.08 E-value=0.084 Score=50.69 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcC
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
-.+|.|+|.+|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999983
No 476
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.05 E-value=0.89 Score=48.48 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=52.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCc-cCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHH
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQD-YQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERC 268 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (841)
..+++.++|+.|+||||++..+... ....-..+.+|+.... ....+-++..++.++.+.. ...+..++...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~------~~~dp~dL~~a 276 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI------VATSPAELEEA 276 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE------ecCCHHHHHHH
Confidence 4579999999999999999999863 2222234667765322 2223344444544443211 11234555555
Q ss_pred HHHHcc-CceEEEEEecCCC
Q 045150 269 LYKSLQ-GKTYLMVLDDVWR 287 (841)
Q Consensus 269 l~~~L~-~kr~LlVlDdv~~ 287 (841)
+...-. +..=+|++|-.-.
T Consensus 277 l~~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 277 VQYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHHHHhcCCCCEEEEECCCC
Confidence 543321 3456888898854
No 477
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=93.04 E-value=0.45 Score=56.32 Aligned_cols=136 Identities=13% Similarity=0.154 Sum_probs=81.1
Q ss_pred CCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhcccc
Q 045150 173 EDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSA 252 (841)
Q Consensus 173 ~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 252 (841)
...+++|.+.+... .|+.|+|..|.||||-.-+++.+... .....+=++-.+......+-+.++++++....+
T Consensus 52 ~~~~~~i~~ai~~~-----~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 52 TAVRDEILKAIEQN-----QVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHHHhC-----CEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 34566777777644 48999999999999988887764322 223344444344445677888889998875432
Q ss_pred c-------------cCCCCCCCHHHHHHHHH-HHccCceEEEEEecCCChhh-HHH----HHhhCCCCCCCcEEEEEecc
Q 045150 253 E-------------EGGLENKSEEDLERCLY-KSLQGKTYLMVLDDVWRKVD-WEN----LRRAFPDNKNGSRVIITTRN 313 (841)
Q Consensus 253 ~-------------~~~~~~~~~~~~~~~l~-~~L~~kr~LlVlDdv~~~~~-~~~----l~~~l~~~~~gs~ilvTtR~ 313 (841)
. ...+.-|+...+...++ +.+=.+=-.+|+|.+++..- -|- ++..++.....-||||+|-.
T Consensus 125 ~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSAT 204 (845)
T COG1643 125 TVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSAT 204 (845)
T ss_pred eeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 2 01122345555555554 33333444799999987542 122 22222222334789999865
Q ss_pred hH
Q 045150 314 RE 315 (841)
Q Consensus 314 ~~ 315 (841)
-+
T Consensus 205 ld 206 (845)
T COG1643 205 LD 206 (845)
T ss_pred cC
Confidence 43
No 478
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.02 E-value=0.066 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999873
No 479
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=93.02 E-value=0.7 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||.+.+.--
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999863
No 480
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.98 E-value=0.59 Score=44.76 Aligned_cols=120 Identities=18% Similarity=0.058 Sum_probs=64.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe---CCccCHHHHHHHHHHHhhhccccccCCCCCCC-------
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV---SQDYQFQYLLLRIIKSFNIISSAEEGGLENKS------- 261 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~------- 261 (841)
..|-|+|..|-||||.|..+.- +..++=-.+..|.. .........++.+- .+.......+......+
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHHH
Confidence 5789999999999999998876 33222222333332 21234444443320 11111000000011111
Q ss_pred HHHHHHHHHHHccCce-EEEEEecCCCh-----hhHHHHHhhCCCCCCCcEEEEEecch
Q 045150 262 EEDLERCLYKSLQGKT-YLMVLDDVWRK-----VDWENLRRAFPDNKNGSRVIITTRNR 314 (841)
Q Consensus 262 ~~~~~~~l~~~L~~kr-~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~ilvTtR~~ 314 (841)
..+..+..++.+.+.+ =|+|||.+-.. -..+++...+.....+.-||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122334455554444 49999998533 24566666676666677899999975
No 481
>PRK13409 putative ATPase RIL; Provisional
Probab=92.97 E-value=0.64 Score=53.87 Aligned_cols=126 Identities=20% Similarity=0.225 Sum_probs=63.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccc-cCC--CCc-EEEEEeCCcc------CHHHH-------------HHHHHHHhhh
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDV-KNK--FEC-CAWVSVSQDY------QFQYL-------------LLRIIKSFNI 248 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~~-~~wv~vs~~~------~~~~~-------------~~~i~~~l~~ 248 (841)
.+++|+|..|+|||||++.++-.... .+. ++. +.+ +.+.. ++.+. ..++++.++.
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y--~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l 443 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISY--KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQL 443 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEE--ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCC
Confidence 48999999999999999999863211 110 111 111 12221 22222 2233333333
Q ss_pred ccccccCCCCCCCHHHHH-HHHHHHccCceEEEEEecCCCh---hhHHHHHhhCCC--CCCCcEEEEEecchHHhhcC
Q 045150 249 ISSAEEGGLENKSEEDLE-RCLYKSLQGKTYLMVLDDVWRK---VDWENLRRAFPD--NKNGSRVIITTRNREVAERS 320 (841)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~-~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~ 320 (841)
.... ...+...+..+.+ -.|.+.|-.+.=+++||.--.. ..-..+...+.. ...|..||++|.+...+...
T Consensus 444 ~~~~-~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~ 520 (590)
T PRK13409 444 ERLL-DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYI 520 (590)
T ss_pred HHHH-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 2100 1112233333333 3466677778889999986432 222222222221 12255688888887665543
No 482
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.90 E-value=0.068 Score=49.51 Aligned_cols=21 Identities=48% Similarity=0.637 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+|.|+|..|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 483
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.90 E-value=0.096 Score=47.96 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..|+.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999988877
No 484
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=92.89 E-value=1.1 Score=42.93 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=66.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCC----cEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFE----CCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLER 267 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 267 (841)
.+|-|.|+||.|||...++..-+--+-..|. .+.|++.+..||+.++.+.+-..+.....++...-.-.+++++.+
T Consensus 39 ~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~~~eE 118 (293)
T KOG2859|consen 39 TLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEEQLEE 118 (293)
T ss_pred cEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhhcCCcHhHHHH
Confidence 4899999999999998888776533444443 377888999999988776665555443222110011123445556
Q ss_pred HHHHHccCceEEEEEecCCChhhHHHHHhhCC
Q 045150 268 CLYKSLQGKTYLMVLDDVWRKVDWENLRRAFP 299 (841)
Q Consensus 268 ~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~ 299 (841)
.....++.-+|+-.+|..+-......+...+.
T Consensus 119 i~~~Cm~Rf~~v~C~~s~~ll~sL~~l~y~i~ 150 (293)
T KOG2859|consen 119 IAGECMSRFRFVNCFASDDLLTSLIDLRYAII 150 (293)
T ss_pred HHHHHHhhEEEEEeeccHHHHHHHHHHHHHHh
Confidence 66666665566666666543344444444444
No 485
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.88 E-value=0.28 Score=49.49 Aligned_cols=83 Identities=19% Similarity=0.112 Sum_probs=42.5
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCc--cCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHH
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQD--YQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLY 270 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 270 (841)
+|+|.|.+|+||||+|+.+.. ..+..=..++.++...- ++....-..+..+......-..-+.+..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~--~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH--IFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998886 23221112344442221 12222222222222111111111134456677777777
Q ss_pred HHccCce
Q 045150 271 KSLQGKT 277 (841)
Q Consensus 271 ~~L~~kr 277 (841)
++.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7776553
No 486
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.86 E-value=0.82 Score=46.27 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.+...
T Consensus 26 e~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 26 DYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999763
No 487
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.85 E-value=0.12 Score=52.00 Aligned_cols=43 Identities=35% Similarity=0.330 Sum_probs=29.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCcc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDY 233 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 233 (841)
.-.++.|.|.+|+|||+||.++... ..+..=+.++||+..++.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEPP 60 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS-H
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCCH
Confidence 3468999999999999999987752 222213467888876543
No 488
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.84 E-value=0.13 Score=57.59 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
++.+|+|.|..|.||||||+.+..
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHh
Confidence 678999999999999999999987
No 489
>PRK13949 shikimate kinase; Provisional
Probab=92.84 E-value=0.074 Score=50.61 Aligned_cols=21 Identities=48% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
-|.|+|+.|.||||+++.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999988
No 490
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.84 E-value=0.088 Score=51.72 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|.|+|++|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999999987
No 491
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.82 E-value=0.095 Score=51.77 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+.|.|+|++|+|||||++.+.+
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 567899999999999999999976
No 492
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.77 E-value=0.45 Score=51.96 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=51.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccC-HHHHHHHHHHHhhhccccccCCCCCCC-H-----HH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQ-FQYLLLRIIKSFNIISSAEEGGLENKS-E-----ED 264 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~-~-----~~ 264 (841)
..++|.|..|+|||||.+.+++.. . -+.++++-+.+... ..++....+..-+.....--....++. . ..
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~~--~--~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRSA--E--VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGF 238 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcCC--C--CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHH
Confidence 479999999999999999999842 2 25677777766543 233333322211100000000001111 0 11
Q ss_pred HHHHHHHHc--cCceEEEEEecCCC
Q 045150 265 LERCLYKSL--QGKTYLMVLDDVWR 287 (841)
Q Consensus 265 ~~~~l~~~L--~~kr~LlVlDdv~~ 287 (841)
..-.+.+++ +++++|+++||+-.
T Consensus 239 ~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 239 VATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 122356666 68999999999943
No 493
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.76 E-value=0.1 Score=44.81 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=19.5
Q ss_pred EEEEEEccCCCcHHHHHHHHh
Q 045150 192 LVISIYGMGGLGKTTLAKKLY 212 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~ 212 (841)
..++|+|..|.|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 589999999999999999976
No 494
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.74 E-value=0.087 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.415 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999873
No 495
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.74 E-value=1.2 Score=44.02 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.+..
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999975
No 496
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.72 E-value=1.1 Score=44.01 Aligned_cols=22 Identities=27% Similarity=0.169 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.++.|.|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998864
No 497
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.70 E-value=0.44 Score=48.48 Aligned_cols=52 Identities=23% Similarity=0.207 Sum_probs=36.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
.++.|.|.+|+|||++|.++..+ ....+=..++|++... +..++...++...
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~-~~~~~g~~vly~s~E~--~~~~~~~r~~~~~ 65 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAEN-IAKKQGKPVLFFSLEM--SKEQLLQRLLASE 65 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH-HHHhCCCceEEEeCCC--CHHHHHHHHHHHh
Confidence 58999999999999999998764 2222123577777544 5667777766543
No 498
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.64 E-value=0.12 Score=50.65 Aligned_cols=40 Identities=30% Similarity=0.355 Sum_probs=27.2
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCC--------CcEEEEEeCCc
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKF--------ECCAWVSVSQD 232 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~ 232 (841)
++.|.|.+|+||||++..+...-.....| ..++|++....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 78999999999999999988742222222 35788876665
No 499
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.63 E-value=0.082 Score=52.31 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+|+|+|+.|+||||||+.++..
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999983
No 500
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.62 E-value=0.18 Score=54.28 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=46.1
Q ss_pred CCCcccCCChHHHHHHHhcC-----------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCC---CcEEEEEe-CC
Q 045150 167 ENPVGFEDDTDVLLSKLLAG-----------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKF---ECCAWVSV-SQ 231 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~v-s~ 231 (841)
..++|.++.++.+..++... .+....-|.++|+.|+|||+||+.+.. .....| +...|... ..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChheeecchhhccCCcc
Confidence 45677777777766666321 001135789999999999999999988 333333 22212221 11
Q ss_pred ccCHHHHHHHHHHHh
Q 045150 232 DYQFQYLLLRIIKSF 246 (841)
Q Consensus 232 ~~~~~~~~~~i~~~l 246 (841)
..+....++++....
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235556666665554
Done!