Query 045150
Match_columns 841
No_of_seqs 667 out of 4193
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 18:12:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 6.7E-41 2.3E-45 383.2 29.4 268 170-449 131-448 (549)
2 1vt4_I APAF-1 related killer D 100.0 6.9E-34 2.4E-38 326.8 15.3 251 168-447 129-420 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-31 5.7E-36 339.3 24.9 263 162-449 119-429 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.5E-28 1.9E-32 280.9 23.4 257 164-448 121-428 (591)
5 3rgz_A Protein brassinosteroid 99.9 3.6E-24 1.2E-28 256.1 16.0 155 509-675 393-556 (768)
6 4fmz_A Internalin; leucine ric 99.9 5.9E-23 2E-27 222.1 17.0 297 460-804 44-344 (347)
7 4eco_A Uncharacterized protein 99.9 4.9E-23 1.7E-27 240.5 16.6 226 502-750 198-470 (636)
8 3rgz_A Protein brassinosteroid 99.9 1.1E-22 3.9E-27 243.1 15.1 117 713-841 632-765 (768)
9 1o6v_A Internalin A; bacterial 99.9 3.7E-22 1.3E-26 224.7 17.6 302 460-804 46-364 (466)
10 4ecn_A Leucine-rich repeat pro 99.9 7.5E-23 2.6E-27 242.8 11.9 230 480-726 446-710 (876)
11 4eco_A Uncharacterized protein 99.9 3.5E-22 1.2E-26 233.2 16.0 320 460-806 249-600 (636)
12 4ecn_A Leucine-rich repeat pro 99.9 7.4E-22 2.5E-26 234.2 18.8 320 460-806 491-840 (876)
13 3v47_A TOLL-like receptor 5B a 99.9 2.7E-22 9.3E-27 225.5 14.1 171 458-639 28-223 (455)
14 3vq2_A TLR4, TOLL-like recepto 99.9 2.8E-22 9.6E-27 234.1 14.7 327 458-811 30-539 (606)
15 2id5_A Lingo-1, leucine rich r 99.9 4.8E-22 1.7E-26 224.8 15.1 288 481-804 31-331 (477)
16 3o6n_A APL1; leucine-rich repe 99.9 6.9E-22 2.4E-26 217.2 14.8 283 480-809 43-334 (390)
17 2z7x_B TOLL-like receptor 1, v 99.9 1.2E-21 4E-26 224.3 16.5 120 687-811 321-462 (520)
18 3oja_B Anopheles plasmodium-re 99.9 6.9E-22 2.4E-26 229.4 14.1 279 480-804 49-335 (597)
19 1o6v_A Internalin A; bacterial 99.9 3.9E-21 1.3E-25 216.3 18.4 294 460-804 68-386 (466)
20 4fmz_A Internalin; leucine ric 99.9 7.3E-21 2.5E-25 205.6 18.9 276 459-778 65-344 (347)
21 3o6n_A APL1; leucine-rich repe 99.9 2E-21 6.7E-26 213.6 14.4 297 460-804 45-350 (390)
22 3v47_A TOLL-like receptor 5B a 99.9 3.1E-21 1.1E-25 216.9 15.4 319 460-809 54-412 (455)
23 2id5_A Lingo-1, leucine rich r 99.8 1.1E-20 3.9E-25 213.5 19.4 268 510-810 32-313 (477)
24 2z81_A CD282 antigen, TOLL-lik 99.8 1.6E-20 5.6E-25 216.4 19.5 328 458-810 24-490 (549)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 6.7E-21 2.3E-25 219.9 15.6 327 463-811 34-491 (562)
26 3j0a_A TOLL-like receptor 5; m 99.8 1.7E-20 5.7E-25 226.7 19.6 100 688-800 288-389 (844)
27 3t6q_A CD180 antigen; protein- 99.8 1.2E-20 4.1E-25 220.3 17.3 245 542-800 255-531 (606)
28 2z81_A CD282 antigen, TOLL-lik 99.8 3.8E-21 1.3E-25 221.7 12.7 174 481-671 25-210 (549)
29 3bz5_A Internalin-J, INLJ; leu 99.8 3.4E-20 1.2E-24 207.0 18.6 257 480-785 40-303 (457)
30 2z63_A TOLL-like receptor 4, v 99.8 2.1E-20 7.2E-25 216.6 17.2 330 458-810 26-511 (570)
31 3j0a_A TOLL-like receptor 5; m 99.8 2.5E-20 8.6E-25 225.1 18.4 299 480-804 22-373 (844)
32 3t6q_A CD180 antigen; protein- 99.8 1.6E-20 5.4E-25 219.3 15.8 148 458-617 31-190 (606)
33 4fcg_A Uncharacterized protein 99.8 2.9E-20 9.9E-25 198.4 16.5 213 510-747 81-311 (328)
34 2z7x_B TOLL-like receptor 1, v 99.8 3.9E-20 1.3E-24 211.7 17.5 113 460-589 21-138 (520)
35 3oja_B Anopheles plasmodium-re 99.8 6.3E-20 2.1E-24 213.0 18.6 277 460-778 51-356 (597)
36 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-20 4.2E-25 200.1 10.2 224 482-749 50-280 (313)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.2E-20 1.1E-24 214.2 14.4 318 458-804 50-508 (562)
38 2ft3_A Biglycan; proteoglycan, 99.8 6.4E-20 2.2E-24 196.7 15.4 262 510-804 54-331 (332)
39 3bz5_A Internalin-J, INLJ; leu 99.8 1.2E-19 3.9E-24 202.6 17.8 266 505-813 37-307 (457)
40 3vq2_A TLR4, TOLL-like recepto 99.8 5.9E-20 2E-24 214.5 15.0 148 480-639 30-192 (606)
41 1xku_A Decorin; proteoglycan, 99.8 9.1E-20 3.1E-24 195.4 14.8 259 510-800 52-327 (330)
42 3qfl_A MLA10; coiled-coil, (CC 99.8 9.4E-21 3.2E-25 165.0 5.6 82 4-85 1-84 (115)
43 4fcg_A Uncharacterized protein 99.8 2.1E-19 7.2E-24 191.7 16.3 228 540-825 80-316 (328)
44 1ogq_A PGIP-2, polygalacturona 99.8 3.3E-20 1.1E-24 196.8 9.8 242 460-748 50-302 (313)
45 2z63_A TOLL-like receptor 4, v 99.8 3.6E-20 1.2E-24 214.7 11.0 322 460-809 52-535 (570)
46 1ziw_A TOLL-like receptor 3; i 99.8 2.7E-19 9.3E-24 211.8 18.4 325 458-804 23-441 (680)
47 1ziw_A TOLL-like receptor 3; i 99.8 4.4E-19 1.5E-23 210.0 17.9 301 483-810 249-601 (680)
48 1xku_A Decorin; proteoglycan, 99.8 8.5E-19 2.9E-23 187.8 15.5 259 510-805 31-305 (330)
49 2z80_A TOLL-like receptor 2, v 99.8 4.4E-19 1.5E-23 191.9 10.8 247 481-751 51-315 (353)
50 3zyi_A Leucine-rich repeat-con 99.8 3.2E-18 1.1E-22 191.7 13.9 214 511-749 76-302 (452)
51 2ft3_A Biglycan; proteoglycan, 99.8 5.8E-18 2E-22 181.4 14.9 259 510-806 33-307 (332)
52 4g8a_A TOLL-like receptor 4; l 99.7 8.9E-18 3E-22 197.3 17.4 123 457-592 49-178 (635)
53 3o53_A Protein LRIM1, AGAP0063 99.7 2E-19 6.9E-24 191.2 3.0 246 501-806 25-275 (317)
54 2z80_A TOLL-like receptor 2, v 99.7 3E-18 1E-22 185.3 12.0 252 510-806 52-314 (353)
55 3zyj_A Leucine-rich repeat-con 99.7 4.8E-18 1.7E-22 189.5 13.4 222 482-750 64-292 (440)
56 2z66_A Variable lymphocyte rec 99.7 2.8E-18 9.5E-23 181.7 10.8 37 536-573 73-109 (306)
57 3zyi_A Leucine-rich repeat-con 99.7 7E-18 2.4E-22 188.9 12.9 222 480-727 73-304 (452)
58 3zyj_A Leucine-rich repeat-con 99.7 1.1E-17 3.7E-22 186.7 13.8 221 510-778 64-290 (440)
59 1ozn_A Reticulon 4 receptor; N 99.7 1.4E-17 4.9E-22 174.2 13.7 243 509-803 31-284 (285)
60 3o53_A Protein LRIM1, AGAP0063 99.7 6.6E-19 2.3E-23 187.3 3.4 244 510-813 10-259 (317)
61 2z66_A Variable lymphocyte rec 99.7 3.2E-18 1.1E-22 181.3 8.6 220 510-778 28-259 (306)
62 1jl5_A Outer protein YOPM; leu 99.7 7.6E-17 2.6E-21 179.6 16.7 181 458-671 89-271 (454)
63 1jl5_A Outer protein YOPM; leu 99.7 1.1E-17 3.7E-22 186.5 9.4 225 480-750 9-250 (454)
64 3g06_A SSPH2 (leucine-rich rep 99.7 3.5E-17 1.2E-21 188.0 12.6 259 482-813 40-305 (622)
65 1ozn_A Reticulon 4 receptor; N 99.7 5.1E-17 1.7E-21 170.0 10.4 248 513-814 14-270 (285)
66 3oja_A Leucine-rich immune mol 99.7 7.8E-17 2.7E-21 181.4 11.4 120 507-639 31-155 (487)
67 1h6u_A Internalin H; cell adhe 99.7 1.6E-16 5.6E-21 167.7 12.9 192 507-751 38-231 (308)
68 1z7x_W Ribonuclease inhibitor; 99.7 4.4E-19 1.5E-23 199.7 -7.6 330 461-804 4-409 (461)
69 3oja_A Leucine-rich immune mol 99.7 2.5E-17 8.6E-22 185.4 5.7 240 532-800 21-270 (487)
70 2z62_A TOLL-like receptor 4, v 99.7 2.1E-16 7.2E-21 164.4 12.2 203 510-751 28-238 (276)
71 1wwl_A Monocyte differentiatio 99.7 5.5E-17 1.9E-21 172.0 7.9 219 512-751 65-310 (312)
72 1z7x_W Ribonuclease inhibitor; 99.6 1.6E-18 5.4E-23 195.2 -8.3 172 602-783 223-412 (461)
73 2o6q_A Variable lymphocyte rec 99.6 1.8E-15 6.2E-20 156.6 14.9 196 511-750 17-218 (270)
74 4g8a_A TOLL-like receptor 4; l 99.6 1.5E-15 5.1E-20 178.2 15.9 124 481-617 51-184 (635)
75 1wwl_A Monocyte differentiatio 99.6 1.5E-17 5.1E-22 176.4 -1.7 246 506-803 39-306 (312)
76 3g06_A SSPH2 (leucine-rich rep 99.6 2.8E-15 9.5E-20 172.2 16.9 250 462-778 42-295 (622)
77 1h6u_A Internalin H; cell adhe 99.6 1.6E-15 5.5E-20 160.1 11.6 197 536-786 36-234 (308)
78 3rfs_A Internalin B, repeat mo 99.6 1.6E-15 5.6E-20 157.1 11.0 88 652-749 128-217 (272)
79 3ogk_B Coronatine-insensitive 99.6 3.6E-16 1.2E-20 181.9 5.9 297 480-806 190-525 (592)
80 3ogk_B Coronatine-insensitive 99.6 3.7E-16 1.3E-20 181.8 5.4 297 480-804 162-499 (592)
81 4glp_A Monocyte differentiatio 99.6 4.1E-15 1.4E-19 157.4 12.8 204 509-751 90-308 (310)
82 1p9a_G Platelet glycoprotein I 99.6 5.5E-15 1.9E-19 154.4 12.9 198 507-750 7-208 (290)
83 2ca6_A RAN GTPase-activating p 99.6 7.3E-18 2.5E-22 184.7 -9.6 242 501-778 23-314 (386)
84 2z62_A TOLL-like receptor 4, v 99.6 4.4E-15 1.5E-19 154.4 10.8 203 532-804 21-235 (276)
85 2ca6_A RAN GTPase-activating p 99.6 1.6E-16 5.4E-21 174.1 -0.4 276 480-778 30-341 (386)
86 2xwt_C Thyrotropin receptor; s 99.6 7.2E-15 2.5E-19 149.2 11.5 129 624-778 101-237 (239)
87 3rfs_A Internalin B, repeat mo 99.6 2.1E-15 7.2E-20 156.3 7.5 206 536-815 36-245 (272)
88 2o6q_A Variable lymphocyte rec 99.6 1.6E-14 5.6E-19 149.5 14.2 195 542-778 17-216 (270)
89 1p9a_G Platelet glycoprotein I 99.6 1.6E-14 5.4E-19 150.9 13.6 199 537-778 6-206 (290)
90 2ast_B S-phase kinase-associat 99.6 6.3E-16 2.1E-20 166.0 2.0 81 691-777 196-282 (336)
91 4ay9_X Follicle-stimulating ho 99.5 1.7E-14 6E-19 155.3 13.1 234 513-800 12-254 (350)
92 3goz_A Leucine-rich repeat-con 99.5 8.8E-16 3E-20 166.4 1.0 248 502-778 14-295 (362)
93 2ast_B S-phase kinase-associat 99.5 8E-15 2.7E-19 157.3 6.8 134 603-751 165-307 (336)
94 2p1m_B Transport inhibitor res 99.5 4.4E-16 1.5E-20 181.2 -3.5 108 688-805 395-518 (594)
95 1h6t_A Internalin B; cell adhe 99.5 4E-14 1.4E-18 148.0 10.8 60 507-577 43-103 (291)
96 3goz_A Leucine-rich repeat-con 99.5 3.4E-15 1.2E-19 161.7 1.2 257 514-804 2-295 (362)
97 4glp_A Monocyte differentiatio 99.5 3.7E-14 1.2E-18 150.1 8.7 62 510-577 64-130 (310)
98 1m9s_A Internalin B; cell inva 99.5 4.1E-14 1.4E-18 162.4 9.4 171 508-728 41-212 (605)
99 2xwt_C Thyrotropin receptor; s 99.5 8.4E-14 2.9E-18 141.2 10.0 192 511-747 32-236 (239)
100 1m9s_A Internalin B; cell inva 99.5 5.5E-14 1.9E-18 161.3 8.5 190 511-753 22-213 (605)
101 3m19_A Variable lymphocyte rec 99.5 2.6E-13 8.9E-18 138.7 12.6 175 511-751 15-193 (251)
102 1h6t_A Internalin B; cell adhe 99.5 2.4E-13 8.3E-18 142.0 12.1 172 536-751 41-214 (291)
103 1w5s_A Origin recognition comp 99.4 1.8E-12 6E-17 143.2 15.7 205 166-377 21-266 (412)
104 3m19_A Variable lymphocyte rec 99.4 1.4E-12 4.8E-17 133.2 11.9 174 541-778 14-190 (251)
105 2p1m_B Transport inhibitor res 99.4 6E-14 2.1E-18 163.1 0.6 230 557-800 281-539 (594)
106 3cvr_A Invasion plasmid antige 99.4 9.7E-13 3.3E-17 149.1 10.2 65 511-592 60-125 (571)
107 2qen_A Walker-type ATPase; unk 99.3 7.5E-12 2.6E-16 134.8 15.2 201 165-380 10-249 (350)
108 2fna_A Conserved hypothetical 99.3 1E-11 3.4E-16 134.2 14.5 200 165-381 11-254 (357)
109 1xeu_A Internalin C; cellular 99.3 6.7E-13 2.3E-17 136.3 4.5 61 509-580 18-79 (263)
110 1dce_A Protein (RAB geranylger 99.3 3.6E-14 1.2E-18 161.8 -6.3 36 538-574 346-381 (567)
111 4ezg_A Putative uncharacterize 99.3 4.1E-12 1.4E-16 124.4 9.1 36 713-750 159-194 (197)
112 4ezg_A Putative uncharacterize 99.3 3.2E-12 1.1E-16 125.2 7.3 146 507-700 41-191 (197)
113 2o6s_A Variable lymphocyte rec 99.3 5.5E-12 1.9E-16 124.8 8.6 94 624-737 96-189 (208)
114 4ay9_X Follicle-stimulating ho 99.3 1.2E-11 4E-16 133.1 10.4 226 537-810 6-241 (350)
115 1xeu_A Internalin C; cellular 99.2 1.5E-11 5E-16 126.3 10.4 125 505-668 36-161 (263)
116 1dce_A Protein (RAB geranylger 99.2 7.4E-14 2.5E-18 159.2 -7.7 219 507-774 346-567 (567)
117 3cvr_A Invasion plasmid antige 99.2 2.2E-11 7.4E-16 138.1 11.2 173 541-751 59-244 (571)
118 2o6s_A Variable lymphocyte rec 99.2 2.8E-11 9.5E-16 119.6 10.4 53 713-778 124-176 (208)
119 2xot_A Amphoterin-induced prot 99.2 2.7E-11 9.4E-16 130.8 10.9 172 513-750 21-202 (361)
120 3e6j_A Variable lymphocyte rec 99.2 7E-11 2.4E-15 118.5 12.7 47 704-751 127-173 (229)
121 2qby_B CDC6 homolog 3, cell di 99.2 1.1E-10 3.7E-15 127.5 13.2 199 167-372 20-240 (384)
122 4b8c_D Glucose-repressible alc 99.2 7.4E-12 2.5E-16 147.4 4.1 142 501-675 215-359 (727)
123 2v9t_B SLIT homolog 2 protein 99.2 7.1E-11 2.4E-15 117.6 10.0 50 513-573 14-64 (220)
124 2v70_A SLIT-2, SLIT homolog 2 99.1 7.6E-11 2.6E-15 117.4 9.5 38 713-750 129-166 (220)
125 2qby_A CDC6 homolog 1, cell di 99.1 1.4E-10 4.7E-15 126.7 11.5 201 166-374 19-242 (386)
126 1njg_A DNA polymerase III subu 99.1 4E-10 1.4E-14 114.4 13.1 199 167-378 23-229 (250)
127 1fnn_A CDC6P, cell division co 99.1 1.5E-09 5.1E-14 118.6 18.3 203 166-375 16-245 (389)
128 2v1u_A Cell division control p 99.1 4E-10 1.4E-14 123.1 13.7 194 166-371 18-243 (387)
129 3e6j_A Variable lymphocyte rec 99.1 1.6E-10 5.4E-15 115.9 9.2 64 510-581 40-105 (229)
130 2v70_A SLIT-2, SLIT homolog 2 99.1 1.9E-10 6.6E-15 114.5 9.6 57 513-580 14-73 (220)
131 2xot_A Amphoterin-induced prot 99.1 1.3E-10 4.4E-15 125.5 8.1 128 510-669 39-175 (361)
132 2v9t_B SLIT homolog 2 protein 99.1 2.2E-10 7.5E-15 114.1 8.9 126 510-667 32-162 (220)
133 3sb4_A Hypothetical leucine ri 99.0 1.1E-09 3.9E-14 116.4 12.7 100 480-592 23-153 (329)
134 2ell_A Acidic leucine-rich nuc 99.0 3.4E-10 1.2E-14 107.5 7.6 133 508-669 22-159 (168)
135 2ell_A Acidic leucine-rich nuc 99.0 4.5E-10 1.5E-14 106.6 8.4 114 688-810 47-164 (168)
136 4b8c_D Glucose-repressible alc 99.0 8.5E-11 2.9E-15 138.4 4.0 47 534-581 217-264 (727)
137 1a9n_A U2A', U2A'; complex (nu 99.0 4.9E-10 1.7E-14 107.2 7.5 132 506-668 15-151 (176)
138 2je0_A Acidic leucine-rich nuc 99.0 4.6E-10 1.6E-14 104.2 6.6 130 507-665 14-148 (149)
139 2chg_A Replication factor C sm 98.9 1.1E-08 3.9E-13 101.8 15.5 182 167-376 17-203 (226)
140 2wfh_A SLIT homolog 2 protein 98.9 1.9E-09 6.5E-14 104.7 8.2 57 513-580 13-70 (193)
141 1w8a_A SLIT protein; signaling 98.9 2.2E-09 7.4E-14 104.3 7.3 56 513-579 11-69 (192)
142 4fdw_A Leucine rich hypothetic 98.9 3.2E-08 1.1E-12 107.6 16.6 243 503-777 129-380 (401)
143 2je0_A Acidic leucine-rich nuc 98.8 1.1E-09 3.7E-14 101.6 3.4 87 481-580 16-104 (149)
144 1a9n_A U2A', U2A'; complex (nu 98.8 3.3E-09 1.1E-13 101.4 6.3 126 480-639 17-151 (176)
145 1ds9_A Outer arm dynein; leuci 98.8 1.4E-10 4.8E-15 113.5 -4.4 113 532-669 39-152 (198)
146 3sb4_A Hypothetical leucine ri 98.8 1.6E-08 5.6E-13 107.4 10.9 223 501-773 84-327 (329)
147 4fdw_A Leucine rich hypothetic 98.7 1.3E-07 4.6E-12 102.7 16.4 183 542-746 136-332 (401)
148 1sxj_B Activator 1 37 kDa subu 98.7 3.2E-08 1.1E-12 104.9 10.9 183 167-377 21-210 (323)
149 1w8a_A SLIT protein; signaling 98.7 1.7E-08 5.8E-13 97.9 7.8 103 511-640 30-138 (192)
150 2o6r_A Variable lymphocyte rec 98.7 2.5E-08 8.4E-13 95.4 8.3 39 541-580 28-68 (177)
151 2wfh_A SLIT homolog 2 protein 98.7 2.7E-08 9.2E-13 96.5 8.4 103 510-639 31-137 (193)
152 1ds9_A Outer arm dynein; leuci 98.7 5.6E-10 1.9E-14 109.2 -5.0 133 501-663 39-180 (198)
153 2o6r_A Variable lymphocyte rec 98.6 1.1E-07 3.7E-12 90.9 8.1 103 510-639 28-135 (177)
154 3g39_A Variable lymphocyte rec 98.5 1E-07 3.4E-12 90.3 7.3 100 512-640 11-114 (170)
155 2r9u_A Variable lymphocyte rec 98.5 1.4E-07 4.7E-12 89.7 7.8 59 513-582 15-75 (174)
156 1iqp_A RFCS; clamp loader, ext 98.5 2.6E-07 8.8E-12 98.0 10.0 183 167-377 25-212 (327)
157 3un9_A NLR family member X1; l 98.4 4.7E-08 1.6E-12 105.2 1.7 160 483-669 73-251 (372)
158 3te6_A Regulatory protein SIR3 98.4 1.1E-06 3.8E-11 90.8 11.0 172 168-346 21-212 (318)
159 1jr3_A DNA polymerase III subu 98.3 3.5E-06 1.2E-10 91.0 14.4 200 167-377 16-221 (373)
160 3g39_A Variable lymphocyte rec 98.3 3.3E-07 1.1E-11 86.7 5.3 82 690-778 30-113 (170)
161 2r9u_A Variable lymphocyte rec 98.3 7.7E-07 2.6E-11 84.5 7.2 76 510-593 33-111 (174)
162 1jbk_A CLPB protein; beta barr 98.3 4.6E-07 1.6E-11 87.6 5.5 46 166-214 21-66 (195)
163 3un9_A NLR family member X1; l 98.3 1.5E-08 5.2E-13 109.0 -5.6 60 509-576 71-138 (372)
164 4fs7_A Uncharacterized protein 98.2 8.1E-06 2.8E-10 88.8 14.4 124 502-636 63-193 (394)
165 2chq_A Replication factor C sm 98.2 4.2E-06 1.4E-10 88.2 10.1 179 167-376 17-203 (319)
166 2ra8_A Uncharacterized protein 98.2 7.5E-07 2.6E-11 94.9 3.6 19 533-551 131-149 (362)
167 4fs7_A Uncharacterized protein 98.1 8.6E-06 3E-10 88.6 11.2 58 687-745 294-351 (394)
168 3bos_A Putative DNA replicatio 98.1 1.9E-06 6.4E-11 86.7 5.1 171 167-376 28-216 (242)
169 3h4m_A Proteasome-activating n 98.1 9.7E-06 3.3E-10 83.9 10.0 179 167-375 17-229 (285)
170 1hqc_A RUVB; extended AAA-ATPa 98.1 1.3E-05 4.5E-10 84.6 11.1 178 167-379 12-213 (324)
171 2ifg_A High affinity nerve gro 98.1 4.3E-06 1.5E-10 89.4 7.2 69 506-583 27-99 (347)
172 1d2n_A N-ethylmaleimide-sensit 98.0 0.00013 4.5E-09 74.6 17.7 171 167-369 33-229 (272)
173 1sxj_D Activator 1 41 kDa subu 98.0 1.2E-05 3.9E-10 86.2 10.2 193 167-375 37-233 (353)
174 3e4g_A ATP synthase subunit S, 98.0 8.2E-07 2.8E-11 82.8 0.7 88 713-806 61-152 (176)
175 2ra8_A Uncharacterized protein 98.0 4E-06 1.4E-10 89.3 5.4 61 502-573 164-227 (362)
176 3u61_B DNA polymerase accessor 98.0 4.2E-05 1.4E-09 80.7 12.6 177 167-374 26-213 (324)
177 2qz4_A Paraplegin; AAA+, SPG7, 98.0 0.00011 3.6E-09 74.8 15.0 178 167-371 6-215 (262)
178 3syl_A Protein CBBX; photosynt 97.9 1.3E-05 4.3E-10 84.1 8.0 154 168-346 32-218 (309)
179 1a5t_A Delta prime, HOLB; zinc 97.9 7.8E-05 2.7E-09 78.8 14.1 96 275-377 107-205 (334)
180 3pvs_A Replication-associated 97.9 3.8E-05 1.3E-09 84.1 11.1 174 167-375 26-213 (447)
181 3uk6_A RUVB-like 2; hexameric 97.9 9.9E-05 3.4E-09 79.3 14.2 198 167-375 44-301 (368)
182 1sxj_E Activator 1 40 kDa subu 97.9 5E-05 1.7E-09 81.2 11.1 194 167-377 14-237 (354)
183 2z4s_A Chromosomal replication 97.9 2.9E-05 9.9E-10 85.2 9.2 158 191-374 130-303 (440)
184 2ifg_A High affinity nerve gro 97.8 1.9E-05 6.5E-10 84.2 6.9 82 480-573 29-111 (347)
185 3eie_A Vacuolar protein sortin 97.8 9.8E-05 3.4E-09 77.6 12.2 179 167-376 18-227 (322)
186 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00037 1.3E-08 73.0 16.5 181 167-377 12-223 (322)
187 4gt6_A Cell surface protein; l 97.8 0.00024 8.1E-09 77.1 15.4 110 651-778 259-368 (394)
188 1sxj_A Activator 1 95 kDa subu 97.8 4.3E-05 1.5E-09 85.9 9.5 189 167-376 39-252 (516)
189 3d8b_A Fidgetin-like protein 1 97.8 0.0002 6.9E-09 76.3 13.9 181 167-378 84-296 (357)
190 2qp9_X Vacuolar protein sortin 97.8 0.00024 8.2E-09 75.6 14.2 180 167-377 51-261 (355)
191 3pfi_A Holliday junction ATP-d 97.7 9.1E-05 3.1E-09 78.6 10.5 171 167-376 29-226 (338)
192 4h09_A Hypothetical leucine ri 97.7 0.0007 2.4E-08 72.9 16.7 85 480-581 44-129 (379)
193 1l8q_A Chromosomal replication 97.6 0.00023 7.8E-09 74.9 11.9 153 191-372 37-203 (324)
194 3vfd_A Spastin; ATPase, microt 97.6 0.00071 2.4E-08 73.1 16.0 180 167-377 115-326 (389)
195 3b9p_A CG5977-PA, isoform A; A 97.6 0.0015 5.3E-08 67.5 17.4 179 167-377 21-233 (297)
196 4h09_A Hypothetical leucine ri 97.6 0.00089 3.1E-08 72.1 16.2 253 460-746 46-319 (379)
197 2p65_A Hypothetical protein PF 97.6 2.7E-05 9.2E-10 74.5 3.6 45 167-214 22-66 (187)
198 4gt6_A Cell surface protein; l 97.6 0.001 3.5E-08 72.1 16.4 287 483-800 65-365 (394)
199 3n70_A Transport activator; si 97.6 8.6E-05 2.9E-09 67.7 6.2 46 168-214 2-47 (145)
200 2zan_A Vacuolar protein sortin 97.5 0.002 6.7E-08 70.7 17.7 180 167-376 134-344 (444)
201 3cf0_A Transitional endoplasmi 97.5 0.0012 4.2E-08 68.4 15.2 175 167-371 15-222 (301)
202 3ec2_A DNA replication protein 97.5 5.8E-05 2E-09 71.8 4.7 99 191-312 38-141 (180)
203 1io0_A Tropomodulin; LRR prote 97.5 2.5E-05 8.4E-10 74.8 1.8 66 501-573 27-101 (185)
204 1io0_A Tropomodulin; LRR prote 97.5 4.6E-06 1.6E-10 79.9 -3.5 36 713-748 121-162 (185)
205 1sxj_C Activator 1 40 kDa subu 97.4 0.0013 4.4E-08 69.6 13.9 179 168-374 26-209 (340)
206 1lv7_A FTSH; alpha/beta domain 97.4 0.0013 4.6E-08 66.3 12.7 179 167-374 12-222 (257)
207 3e4g_A ATP synthase subunit S, 97.3 9.6E-05 3.3E-09 68.8 3.1 17 766-783 138-154 (176)
208 1qvr_A CLPB protein; coiled co 97.3 0.00046 1.6E-08 82.6 9.6 155 166-344 169-344 (854)
209 2w58_A DNAI, primosome compone 97.3 0.00013 4.5E-09 70.9 4.0 36 192-229 55-90 (202)
210 2gno_A DNA polymerase III, gam 97.3 0.00093 3.2E-08 69.0 10.7 145 173-345 3-152 (305)
211 3co5_A Putative two-component 97.3 0.00015 5.1E-09 66.0 3.9 46 168-214 5-50 (143)
212 3pxg_A Negative regulator of g 97.3 0.00032 1.1E-08 77.6 7.2 146 167-345 180-338 (468)
213 4b4t_J 26S protease regulatory 97.2 0.0025 8.6E-08 67.5 13.4 174 167-370 148-354 (405)
214 4b4t_L 26S protease subunit RP 97.2 0.0024 8.1E-08 68.8 13.2 174 167-370 181-387 (437)
215 2bjv_A PSP operon transcriptio 97.2 0.0009 3.1E-08 68.0 9.0 46 168-214 7-52 (265)
216 3hu3_A Transitional endoplasmi 97.1 0.0015 5.2E-08 72.1 10.9 178 167-375 204-413 (489)
217 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0037 1.3E-07 73.9 14.9 153 167-345 186-362 (758)
218 4b4t_I 26S protease regulatory 97.1 0.0025 8.4E-08 67.8 11.5 171 168-369 183-387 (437)
219 4b4t_M 26S protease regulatory 97.1 0.0018 6.3E-08 69.6 10.6 172 167-369 181-386 (434)
220 4b4t_K 26S protease regulatory 97.1 0.0029 1E-07 68.0 11.9 47 167-213 172-228 (428)
221 2ce7_A Cell division protein F 97.1 0.0028 9.5E-08 69.4 11.9 175 167-370 16-221 (476)
222 4fcw_A Chaperone protein CLPB; 97.1 0.0017 5.9E-08 67.7 10.0 62 168-231 18-85 (311)
223 1ofh_A ATP-dependent HSL prote 97.0 0.0022 7.5E-08 66.7 10.3 47 167-213 15-72 (310)
224 2r62_A Cell division protease 96.9 0.00035 1.2E-08 71.2 3.2 46 167-213 11-66 (268)
225 1ojl_A Transcriptional regulat 96.9 0.0047 1.6E-07 63.9 11.4 46 167-213 2-47 (304)
226 4b4t_H 26S protease regulatory 96.9 0.0038 1.3E-07 67.0 10.7 173 167-369 209-414 (467)
227 3rw6_A Nuclear RNA export fact 96.8 0.0011 3.7E-08 66.7 5.4 82 504-593 164-257 (267)
228 3cf2_A TER ATPase, transitiona 96.8 0.0088 3E-07 69.5 13.4 173 168-370 205-407 (806)
229 2kjq_A DNAA-related protein; s 96.8 0.0013 4.6E-08 59.9 5.4 23 192-214 37-59 (149)
230 3pxi_A Negative regulator of g 96.8 0.0015 5.3E-08 77.1 7.2 150 167-345 180-338 (758)
231 2c9o_A RUVB-like 1; hexameric 96.6 0.015 5.1E-07 64.0 13.6 91 279-376 298-409 (456)
232 3pxi_A Negative regulator of g 96.6 0.0061 2.1E-07 72.0 11.1 152 167-345 491-675 (758)
233 3t15_A Ribulose bisphosphate c 96.6 0.0052 1.8E-07 63.3 9.0 24 190-213 35-58 (293)
234 2dhr_A FTSH; AAA+ protein, hex 96.5 0.013 4.5E-07 64.5 11.6 172 166-370 30-236 (499)
235 1in4_A RUVB, holliday junction 96.4 0.015 5.2E-07 61.0 11.1 168 168-375 26-221 (334)
236 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.003 1E-07 64.5 4.8 69 191-287 123-193 (331)
237 2x8a_A Nuclear valosin-contain 96.3 0.025 8.5E-07 57.4 11.6 122 194-345 47-191 (274)
238 2cvh_A DNA repair and recombin 96.3 0.013 4.4E-07 57.3 9.3 89 192-286 21-115 (220)
239 1ypw_A Transitional endoplasmi 96.2 0.021 7.1E-07 67.4 11.9 153 167-345 204-385 (806)
240 3rw6_A Nuclear RNA export fact 96.1 0.0042 1.4E-07 62.4 4.8 83 480-573 168-259 (267)
241 3m6a_A ATP-dependent protease 95.9 0.0082 2.8E-07 67.5 6.4 45 168-213 82-130 (543)
242 3hr8_A Protein RECA; alpha and 95.8 0.016 5.6E-07 60.7 7.8 103 176-286 46-149 (356)
243 1ixz_A ATP-dependent metallopr 95.8 0.13 4.3E-06 51.5 14.3 20 194-213 52-71 (254)
244 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.035 1.2E-06 54.7 9.7 118 192-314 24-168 (235)
245 1v5w_A DMC1, meiotic recombina 95.5 0.057 1.9E-06 56.7 10.8 70 176-247 108-181 (343)
246 1g5t_A COB(I)alamin adenosyltr 95.4 0.03 1E-06 52.8 7.2 116 193-314 30-163 (196)
247 1rz3_A Hypothetical protein rb 95.4 0.01 3.5E-07 57.2 4.2 40 174-213 5-44 (201)
248 2z43_A DNA repair and recombin 95.3 0.024 8.3E-07 59.1 7.2 94 192-286 108-213 (324)
249 1n0w_A DNA repair protein RAD5 95.3 0.038 1.3E-06 54.8 8.4 94 192-286 25-129 (243)
250 1vpl_A ABC transporter, ATP-bi 95.3 0.11 3.7E-06 51.9 11.6 22 192-213 42-63 (256)
251 2i1q_A DNA repair and recombin 95.2 0.033 1.1E-06 58.1 7.8 95 191-286 98-214 (322)
252 2qgz_A Helicase loader, putati 95.2 0.024 8.2E-07 58.6 6.6 51 177-229 138-189 (308)
253 1r6b_X CLPA protein; AAA+, N-t 95.2 0.059 2E-06 63.6 10.8 47 167-213 458-510 (758)
254 1xp8_A RECA protein, recombina 95.2 0.038 1.3E-06 58.3 8.0 105 174-286 57-162 (366)
255 3io5_A Recombination and repai 95.1 0.039 1.3E-06 56.1 7.5 86 193-286 30-121 (333)
256 1iy2_A ATP-dependent metallopr 95.0 0.27 9.1E-06 49.8 13.9 20 194-213 76-95 (278)
257 1qvr_A CLPB protein; coiled co 95.0 0.056 1.9E-06 64.5 9.8 46 168-213 559-610 (854)
258 3bh0_A DNAB-like replicative h 95.0 0.11 3.9E-06 53.6 11.0 51 192-246 69-119 (315)
259 2zr9_A Protein RECA, recombina 95.0 0.042 1.4E-06 57.7 7.6 87 192-286 62-149 (349)
260 1jr3_D DNA polymerase III, del 95.0 0.19 6.6E-06 52.7 12.9 155 191-375 18-183 (343)
261 2pze_A Cystic fibrosis transme 94.8 0.33 1.1E-05 47.5 13.1 22 192-213 35-56 (229)
262 3dm5_A SRP54, signal recogniti 94.7 0.22 7.6E-06 53.5 12.6 24 190-213 99-122 (443)
263 1u94_A RECA protein, recombina 94.7 0.048 1.7E-06 57.3 7.3 104 174-285 46-150 (356)
264 3tui_C Methionine import ATP-b 94.6 0.21 7.1E-06 52.3 11.7 125 192-319 55-229 (366)
265 3c8u_A Fructokinase; YP_612366 94.6 0.024 8.2E-07 54.9 4.2 24 190-213 21-44 (208)
266 2pjz_A Hypothetical protein ST 94.4 0.22 7.6E-06 49.8 11.1 21 193-213 32-52 (263)
267 3lda_A DNA repair protein RAD5 94.4 0.066 2.2E-06 57.2 7.4 56 192-248 179-238 (400)
268 3lw7_A Adenylate kinase relate 94.4 0.02 6.8E-07 53.5 3.1 19 193-211 3-21 (179)
269 1vma_A Cell division protein F 94.3 0.13 4.3E-06 52.8 9.3 91 190-286 103-196 (306)
270 3ice_A Transcription terminati 94.3 0.012 4.2E-07 61.3 1.5 51 178-233 163-216 (422)
271 1zp6_A Hypothetical protein AT 94.2 0.025 8.5E-07 53.8 3.5 23 192-214 10-32 (191)
272 2b8t_A Thymidine kinase; deoxy 94.2 0.018 6.1E-07 56.1 2.3 111 192-314 13-126 (223)
273 1qhx_A CPT, protein (chloramph 94.1 0.022 7.5E-07 53.5 2.9 22 192-213 4-25 (178)
274 3kb2_A SPBC2 prophage-derived 94.0 0.024 8.1E-07 52.9 2.9 22 192-213 2-23 (173)
275 3fwy_A Light-independent proto 94.0 0.028 9.6E-07 58.1 3.5 39 190-230 47-85 (314)
276 1ly1_A Polynucleotide kinase; 93.9 0.028 9.4E-07 52.8 3.1 22 192-213 3-24 (181)
277 1odf_A YGR205W, hypothetical 3 93.8 0.057 1.9E-06 55.1 5.4 24 190-213 30-53 (290)
278 1kgd_A CASK, peripheral plasma 93.8 0.027 9.4E-07 53.0 2.8 22 192-213 6-27 (180)
279 3vaa_A Shikimate kinase, SK; s 93.8 0.028 9.6E-07 53.9 2.9 22 192-213 26-47 (199)
280 2r44_A Uncharacterized protein 93.8 0.028 9.7E-07 58.9 3.1 42 167-213 27-68 (331)
281 4gp7_A Metallophosphoesterase; 93.7 0.035 1.2E-06 51.7 3.3 22 192-213 10-31 (171)
282 3uie_A Adenylyl-sulfate kinase 93.6 0.039 1.3E-06 53.0 3.6 23 191-213 25-47 (200)
283 4a1f_A DNAB helicase, replicat 93.6 0.24 8.2E-06 51.4 9.7 52 192-247 47-98 (338)
284 1kag_A SKI, shikimate kinase I 93.6 0.029 9.8E-07 52.3 2.6 22 192-213 5-26 (173)
285 1pzn_A RAD51, DNA repair and r 93.6 0.1 3.5E-06 54.9 7.0 56 190-246 130-189 (349)
286 1uj2_A Uridine-cytidine kinase 93.6 0.035 1.2E-06 55.5 3.3 24 190-213 21-44 (252)
287 3trf_A Shikimate kinase, SK; a 93.4 0.031 1.1E-06 52.8 2.5 22 192-213 6-27 (185)
288 3nbx_X ATPase RAVA; AAA+ ATPas 93.4 0.038 1.3E-06 60.9 3.5 43 167-214 22-64 (500)
289 1knq_A Gluconate kinase; ALFA/ 93.4 0.043 1.5E-06 51.3 3.4 23 191-213 8-30 (175)
290 3jvv_A Twitching mobility prot 93.4 0.081 2.8E-06 55.6 5.8 111 192-318 124-235 (356)
291 2bdt_A BH3686; alpha-beta prot 93.3 0.044 1.5E-06 52.0 3.4 22 192-213 3-24 (189)
292 2rhm_A Putative kinase; P-loop 93.3 0.043 1.5E-06 52.2 3.3 23 191-213 5-27 (193)
293 1nks_A Adenylate kinase; therm 93.3 0.041 1.4E-06 52.3 3.1 22 192-213 2-23 (194)
294 1sky_E F1-ATPase, F1-ATP synth 93.2 0.16 5.4E-06 54.8 7.8 49 193-242 153-202 (473)
295 2px0_A Flagellar biosynthesis 93.2 0.14 4.7E-06 52.4 7.1 23 191-213 105-127 (296)
296 3tr0_A Guanylate kinase, GMP k 93.2 0.043 1.5E-06 52.8 3.1 22 192-213 8-29 (205)
297 1pgv_A TMD-1, tropomodulin TMD 93.2 0.0094 3.2E-07 56.5 -1.6 15 732-746 152-166 (197)
298 4eun_A Thermoresistant glucoki 93.2 0.044 1.5E-06 52.6 3.1 22 192-213 30-51 (200)
299 3t61_A Gluconokinase; PSI-biol 93.2 0.034 1.1E-06 53.5 2.3 22 192-213 19-40 (202)
300 2qt1_A Nicotinamide riboside k 93.1 0.055 1.9E-06 52.2 3.7 24 190-213 20-43 (207)
301 3asz_A Uridine kinase; cytidin 93.0 0.053 1.8E-06 52.5 3.5 23 191-213 6-28 (211)
302 1ye8_A Protein THEP1, hypothet 93.0 0.05 1.7E-06 51.0 3.1 22 193-214 2-23 (178)
303 2xxa_A Signal recognition part 93.0 0.42 1.4E-05 51.6 10.8 24 190-213 99-122 (433)
304 2ck3_D ATP synthase subunit be 93.0 0.12 4.3E-06 55.5 6.5 106 178-286 142-263 (482)
305 3a00_A Guanylate kinase, GMP k 93.0 0.037 1.3E-06 52.4 2.2 22 192-213 2-23 (186)
306 1kht_A Adenylate kinase; phosp 93.0 0.045 1.5E-06 51.9 2.9 22 192-213 4-25 (192)
307 2ze6_A Isopentenyl transferase 92.9 0.049 1.7E-06 54.5 3.1 22 192-213 2-23 (253)
308 2jaq_A Deoxyguanosine kinase; 92.9 0.047 1.6E-06 52.5 2.9 21 193-213 2-22 (205)
309 2ffh_A Protein (FFH); SRP54, s 92.9 0.26 9E-06 52.8 8.9 37 191-229 98-134 (425)
310 3tqc_A Pantothenate kinase; bi 92.9 0.1 3.5E-06 53.8 5.5 25 189-213 90-114 (321)
311 3kl4_A SRP54, signal recogniti 92.9 0.24 8.3E-06 53.2 8.6 24 190-213 96-119 (433)
312 1uf9_A TT1252 protein; P-loop, 92.9 0.056 1.9E-06 51.8 3.4 24 190-213 7-30 (203)
313 1gvn_B Zeta; postsegregational 92.8 0.081 2.8E-06 53.9 4.7 24 190-213 32-55 (287)
314 3hws_A ATP-dependent CLP prote 92.8 0.048 1.6E-06 58.0 3.1 45 169-213 17-73 (363)
315 3tau_A Guanylate kinase, GMP k 92.8 0.052 1.8E-06 52.4 3.1 22 192-213 9-30 (208)
316 1ex7_A Guanylate kinase; subst 92.8 0.029 9.9E-07 52.9 1.1 22 192-213 2-23 (186)
317 3iij_A Coilin-interacting nucl 92.7 0.038 1.3E-06 51.9 1.9 22 192-213 12-33 (180)
318 1zuh_A Shikimate kinase; alpha 92.7 0.052 1.8E-06 50.3 2.9 24 190-213 6-29 (168)
319 2j41_A Guanylate kinase; GMP, 92.7 0.056 1.9E-06 52.0 3.2 22 192-213 7-28 (207)
320 2qor_A Guanylate kinase; phosp 92.7 0.042 1.4E-06 52.9 2.3 23 191-213 12-34 (204)
321 1fx0_B ATP synthase beta chain 92.7 0.21 7.3E-06 53.9 7.8 93 193-286 167-276 (498)
322 1jjv_A Dephospho-COA kinase; P 92.7 0.063 2.2E-06 51.7 3.5 22 192-213 3-24 (206)
323 1via_A Shikimate kinase; struc 92.7 0.044 1.5E-06 51.2 2.3 21 193-213 6-26 (175)
324 1ukz_A Uridylate kinase; trans 92.7 0.062 2.1E-06 51.6 3.4 24 190-213 14-37 (203)
325 2if2_A Dephospho-COA kinase; a 92.7 0.057 1.9E-06 51.9 3.1 21 193-213 3-23 (204)
326 1pgv_A TMD-1, tropomodulin TMD 92.7 0.012 4E-07 55.9 -1.8 115 604-725 39-169 (197)
327 1tev_A UMP-CMP kinase; ploop, 92.6 0.058 2E-06 51.3 3.1 23 191-213 3-25 (196)
328 1htw_A HI0065; nucleotide-bind 92.6 0.068 2.3E-06 48.9 3.4 22 192-213 34-55 (158)
329 1lvg_A Guanylate kinase, GMP k 92.6 0.045 1.5E-06 52.4 2.2 22 192-213 5-26 (198)
330 1cke_A CK, MSSA, protein (cyti 92.6 0.059 2E-06 52.8 3.1 22 192-213 6-27 (227)
331 1y63_A LMAJ004144AAA protein; 92.5 0.056 1.9E-06 51.0 2.8 23 191-213 10-32 (184)
332 2yvu_A Probable adenylyl-sulfa 92.5 0.067 2.3E-06 50.5 3.4 23 191-213 13-35 (186)
333 2ga8_A Hypothetical 39.9 kDa p 92.5 0.081 2.8E-06 54.9 4.1 41 173-213 5-46 (359)
334 3llm_A ATP-dependent RNA helic 92.5 0.53 1.8E-05 46.2 10.1 107 176-288 66-188 (235)
335 3a4m_A L-seryl-tRNA(SEC) kinas 92.4 0.064 2.2E-06 53.9 3.2 23 191-213 4-26 (260)
336 1j8m_F SRP54, signal recogniti 92.4 0.43 1.5E-05 48.7 9.5 37 191-229 98-134 (297)
337 3cm0_A Adenylate kinase; ATP-b 92.4 0.065 2.2E-06 50.6 3.1 22 192-213 5-26 (186)
338 2p5t_B PEZT; postsegregational 92.4 0.083 2.8E-06 52.8 4.0 24 190-213 31-54 (253)
339 1znw_A Guanylate kinase, GMP k 92.4 0.065 2.2E-06 51.7 3.1 22 192-213 21-42 (207)
340 3aez_A Pantothenate kinase; tr 92.4 0.073 2.5E-06 54.9 3.7 24 190-213 89-112 (312)
341 2c95_A Adenylate kinase 1; tra 92.4 0.058 2E-06 51.4 2.7 22 192-213 10-31 (196)
342 2bbw_A Adenylate kinase 4, AK4 92.4 0.064 2.2E-06 53.4 3.1 22 192-213 28-49 (246)
343 1xjc_A MOBB protein homolog; s 92.4 0.064 2.2E-06 49.5 2.8 23 191-213 4-26 (169)
344 3umf_A Adenylate kinase; rossm 92.3 0.074 2.5E-06 51.5 3.4 24 190-213 28-51 (217)
345 2iyv_A Shikimate kinase, SK; t 92.2 0.05 1.7E-06 51.3 2.1 21 193-213 4-24 (184)
346 3ney_A 55 kDa erythrocyte memb 92.2 0.067 2.3E-06 50.8 2.8 23 191-213 19-41 (197)
347 4a74_A DNA repair and recombin 92.2 0.19 6.4E-06 49.2 6.3 45 191-235 25-73 (231)
348 2bwj_A Adenylate kinase 5; pho 92.1 0.067 2.3E-06 51.1 2.8 22 192-213 13-34 (199)
349 2plr_A DTMP kinase, probable t 92.1 0.072 2.5E-06 51.4 3.1 22 192-213 5-26 (213)
350 2pt5_A Shikimate kinase, SK; a 92.1 0.07 2.4E-06 49.4 2.9 21 193-213 2-22 (168)
351 1qf9_A UMP/CMP kinase, protein 92.1 0.073 2.5E-06 50.5 3.1 23 191-213 6-28 (194)
352 3b9q_A Chloroplast SRP recepto 92.0 0.13 4.5E-06 52.7 5.0 24 190-213 99-122 (302)
353 1e6c_A Shikimate kinase; phosp 92.0 0.06 2.1E-06 50.1 2.3 21 193-213 4-24 (173)
354 2cdn_A Adenylate kinase; phosp 92.0 0.072 2.5E-06 51.1 2.9 22 192-213 21-42 (201)
355 4e22_A Cytidylate kinase; P-lo 91.9 0.078 2.7E-06 53.0 3.1 22 192-213 28-49 (252)
356 2jeo_A Uridine-cytidine kinase 91.9 0.091 3.1E-06 52.2 3.6 23 191-213 25-47 (245)
357 2pt7_A CAG-ALFA; ATPase, prote 91.9 0.38 1.3E-05 50.0 8.5 104 193-315 173-276 (330)
358 2grj_A Dephospho-COA kinase; T 91.9 0.076 2.6E-06 50.4 2.9 24 190-213 11-34 (192)
359 2pbr_A DTMP kinase, thymidylat 91.9 0.076 2.6E-06 50.4 2.9 21 193-213 2-22 (195)
360 1z6g_A Guanylate kinase; struc 91.8 0.069 2.4E-06 52.0 2.6 22 192-213 24-45 (218)
361 2vli_A Antibiotic resistance p 91.8 0.057 1.9E-06 50.8 1.9 22 192-213 6-27 (183)
362 3rfe_A Platelet glycoprotein I 91.7 0.14 4.7E-06 45.1 4.1 44 703-749 24-67 (130)
363 1q57_A DNA primase/helicase; d 91.6 0.49 1.7E-05 52.6 9.6 51 192-246 243-294 (503)
364 2i3b_A HCR-ntpase, human cance 91.5 0.081 2.8E-06 50.1 2.6 22 193-214 3-24 (189)
365 1s96_A Guanylate kinase, GMP k 91.5 0.095 3.2E-06 50.9 3.1 22 192-213 17-38 (219)
366 3l0o_A Transcription terminati 91.5 0.44 1.5E-05 49.7 8.1 53 177-232 163-216 (427)
367 2r6a_A DNAB helicase, replicat 91.4 0.68 2.3E-05 50.6 10.3 71 169-244 183-253 (454)
368 2f6r_A COA synthase, bifunctio 91.4 0.11 3.8E-06 52.8 3.6 24 190-213 74-97 (281)
369 2f1r_A Molybdopterin-guanine d 91.4 0.061 2.1E-06 50.0 1.5 22 192-213 3-24 (171)
370 2q6t_A DNAB replication FORK h 91.4 0.81 2.8E-05 49.8 10.8 74 169-247 180-253 (444)
371 1zu4_A FTSY; GTPase, signal re 91.4 0.19 6.6E-06 51.9 5.5 24 190-213 104-127 (320)
372 2og2_A Putative signal recogni 91.3 0.18 6.1E-06 52.9 5.1 24 190-213 156-179 (359)
373 1rj9_A FTSY, signal recognitio 91.3 0.099 3.4E-06 53.6 3.1 23 191-213 102-124 (304)
374 3vr4_D V-type sodium ATPase su 91.3 0.16 5.5E-06 54.3 4.8 91 193-286 153-258 (465)
375 1gtv_A TMK, thymidylate kinase 91.3 0.059 2E-06 52.2 1.4 21 193-213 2-22 (214)
376 2z0h_A DTMP kinase, thymidylat 91.2 0.096 3.3E-06 49.9 2.9 21 193-213 2-22 (197)
377 2wwf_A Thymidilate kinase, put 91.2 0.095 3.2E-06 50.6 2.8 22 192-213 11-32 (212)
378 2pcj_A ABC transporter, lipopr 91.2 0.1 3.5E-06 50.9 3.1 22 192-213 31-52 (224)
379 1nn5_A Similar to deoxythymidy 91.2 0.094 3.2E-06 50.8 2.8 22 192-213 10-31 (215)
380 3tif_A Uncharacterized ABC tra 91.2 0.1 3.6E-06 51.3 3.1 22 192-213 32-53 (235)
381 1zd8_A GTP:AMP phosphotransfer 91.2 0.095 3.2E-06 51.4 2.8 22 192-213 8-29 (227)
382 2pez_A Bifunctional 3'-phospho 91.2 0.12 4E-06 48.4 3.4 22 192-213 6-27 (179)
383 2r9v_A ATP synthase subunit al 91.2 0.41 1.4E-05 51.8 7.8 90 193-286 177-277 (515)
384 2yhs_A FTSY, cell division pro 91.1 0.18 6.3E-06 54.7 5.2 24 190-213 292-315 (503)
385 1aky_A Adenylate kinase; ATP:A 91.1 0.1 3.4E-06 50.9 2.9 22 192-213 5-26 (220)
386 1m7g_A Adenylylsulfate kinase; 91.1 0.12 4.1E-06 50.0 3.4 23 191-213 25-47 (211)
387 1fx0_A ATP synthase alpha chai 91.1 0.2 6.9E-06 54.3 5.4 90 193-287 165-266 (507)
388 2onk_A Molybdate/tungstate ABC 91.0 0.1 3.5E-06 51.5 2.9 22 192-213 25-46 (240)
389 3tlx_A Adenylate kinase 2; str 91.0 0.1 3.5E-06 51.7 2.9 24 190-213 28-51 (243)
390 2ehv_A Hypothetical protein PH 91.0 0.11 3.7E-06 51.7 3.1 22 192-213 31-52 (251)
391 3gfo_A Cobalt import ATP-bindi 91.0 0.17 5.7E-06 51.1 4.4 22 192-213 35-56 (275)
392 1sq5_A Pantothenate kinase; P- 91.0 0.2 6.9E-06 51.6 5.2 24 190-213 79-102 (308)
393 2j37_W Signal recognition part 90.9 1.8 6.3E-05 47.4 13.0 24 190-213 100-123 (504)
394 3fb4_A Adenylate kinase; psych 90.9 0.11 3.6E-06 50.5 2.9 21 193-213 2-22 (216)
395 1um8_A ATP-dependent CLP prote 90.9 0.093 3.2E-06 56.0 2.6 22 192-213 73-94 (376)
396 1vht_A Dephospho-COA kinase; s 90.9 0.14 4.7E-06 49.8 3.7 23 191-213 4-26 (218)
397 2v54_A DTMP kinase, thymidylat 90.9 0.11 3.7E-06 49.8 2.9 22 192-213 5-26 (204)
398 1zak_A Adenylate kinase; ATP:A 90.8 0.088 3E-06 51.4 2.2 22 192-213 6-27 (222)
399 1cr0_A DNA primase/helicase; R 90.8 0.26 9E-06 50.4 5.9 50 192-245 36-86 (296)
400 2hf9_A Probable hydrogenase ni 90.8 0.13 4.4E-06 50.2 3.4 25 190-214 37-61 (226)
401 4g1u_C Hemin import ATP-bindin 90.8 0.2 6.9E-06 50.2 4.8 22 192-213 38-59 (266)
402 3nwj_A ATSK2; P loop, shikimat 90.7 0.1 3.6E-06 51.7 2.6 22 192-213 49-70 (250)
403 1tue_A Replication protein E1; 90.7 0.15 5.2E-06 48.2 3.5 36 176-213 45-80 (212)
404 2cbz_A Multidrug resistance-as 90.7 0.13 4.3E-06 50.8 3.1 23 192-214 32-54 (237)
405 3dl0_A Adenylate kinase; phosp 90.6 0.12 4E-06 50.2 2.9 21 193-213 2-22 (216)
406 3b85_A Phosphate starvation-in 90.6 0.1 3.4E-06 50.3 2.3 21 193-213 24-44 (208)
407 1b0u_A Histidine permease; ABC 90.6 0.13 4.4E-06 51.6 3.1 22 192-213 33-54 (262)
408 3bgw_A DNAB-like replicative h 90.6 1.1 3.9E-05 48.5 10.9 72 169-246 177-248 (444)
409 3d3q_A TRNA delta(2)-isopenten 90.6 0.13 4.3E-06 53.3 3.1 22 192-213 8-29 (340)
410 3lnc_A Guanylate kinase, GMP k 90.5 0.09 3.1E-06 51.7 1.9 21 192-212 28-48 (231)
411 1yrb_A ATP(GTP)binding protein 90.4 0.16 5.3E-06 51.0 3.7 24 190-213 13-36 (262)
412 1ji0_A ABC transporter; ATP bi 90.4 0.14 4.7E-06 50.7 3.1 22 192-213 33-54 (240)
413 1np6_A Molybdopterin-guanine d 90.4 0.13 4.5E-06 47.8 2.8 23 191-213 6-28 (174)
414 3r20_A Cytidylate kinase; stru 90.4 0.14 4.8E-06 50.0 3.1 22 192-213 10-31 (233)
415 3ake_A Cytidylate kinase; CMP 90.4 0.13 4.4E-06 49.5 2.9 21 193-213 4-24 (208)
416 2olj_A Amino acid ABC transpor 90.4 0.14 4.7E-06 51.3 3.1 22 192-213 51-72 (263)
417 1sgw_A Putative ABC transporte 90.3 0.12 4.1E-06 50.0 2.5 21 193-213 37-57 (214)
418 3p32_A Probable GTPase RV1496/ 90.3 0.24 8.1E-06 52.2 5.1 36 177-213 66-101 (355)
419 1mv5_A LMRA, multidrug resista 90.3 0.15 5.2E-06 50.5 3.4 22 192-213 29-50 (243)
420 1g6h_A High-affinity branched- 90.3 0.14 4.8E-06 51.2 3.1 22 192-213 34-55 (257)
421 3e70_C DPA, signal recognition 90.2 0.16 5.6E-06 52.6 3.7 24 190-213 128-151 (328)
422 2d2e_A SUFC protein; ABC-ATPas 90.1 0.15 5E-06 50.8 3.1 22 192-213 30-51 (250)
423 2ff7_A Alpha-hemolysin translo 90.1 0.15 5E-06 50.6 3.1 22 192-213 36-57 (247)
424 2iw3_A Elongation factor 3A; a 90.1 1.1 3.9E-05 53.0 11.0 123 193-319 463-610 (986)
425 2qe7_A ATP synthase subunit al 90.0 0.47 1.6E-05 51.3 7.1 90 193-286 164-264 (502)
426 1g8p_A Magnesium-chelatase 38 90.0 0.083 2.8E-06 55.7 1.2 43 168-213 25-67 (350)
427 2zu0_C Probable ATP-dependent 89.9 0.16 5.3E-06 51.1 3.1 22 192-213 47-68 (267)
428 2zej_A Dardarin, leucine-rich 89.9 0.16 5.3E-06 47.8 3.0 22 193-214 4-25 (184)
429 4eaq_A DTMP kinase, thymidylat 89.9 0.26 9E-06 48.2 4.7 24 191-214 26-49 (229)
430 2wsm_A Hydrogenase expression/ 89.9 0.17 5.7E-06 49.2 3.2 25 190-214 29-53 (221)
431 2ixe_A Antigen peptide transpo 89.9 0.16 5.4E-06 51.2 3.1 22 192-213 46-67 (271)
432 3a8t_A Adenylate isopentenyltr 89.9 0.18 6E-06 52.0 3.5 23 191-213 40-62 (339)
433 3be4_A Adenylate kinase; malar 89.9 0.15 5E-06 49.6 2.8 22 192-213 6-27 (217)
434 2xb4_A Adenylate kinase; ATP-b 89.8 0.15 5.1E-06 49.8 2.9 21 193-213 2-22 (223)
435 2wji_A Ferrous iron transport 89.8 0.25 8.5E-06 45.4 4.3 23 192-214 4-26 (165)
436 2qi9_C Vitamin B12 import ATP- 89.8 0.16 5.5E-06 50.3 3.1 22 192-213 27-48 (249)
437 2ghi_A Transport protein; mult 89.8 0.16 5.5E-06 50.8 3.1 22 192-213 47-68 (260)
438 1e4v_A Adenylate kinase; trans 89.8 0.15 5.2E-06 49.3 2.8 21 193-213 2-22 (214)
439 3crm_A TRNA delta(2)-isopenten 89.7 0.16 5.6E-06 52.1 3.1 22 192-213 6-27 (323)
440 3sr0_A Adenylate kinase; phosp 89.7 0.16 5.5E-06 48.7 2.9 21 193-213 2-22 (206)
441 2yz2_A Putative ABC transporte 89.7 0.17 5.7E-06 50.9 3.1 22 192-213 34-55 (266)
442 2nq2_C Hypothetical ABC transp 89.6 0.17 5.8E-06 50.4 3.1 22 192-213 32-53 (253)
443 3end_A Light-independent proto 89.6 0.19 6.4E-06 51.9 3.5 40 190-231 40-79 (307)
444 2ihy_A ABC transporter, ATP-bi 89.6 0.17 5.8E-06 51.2 3.1 22 192-213 48-69 (279)
445 1oix_A RAS-related protein RAB 89.6 0.18 6.1E-06 47.8 3.1 24 191-214 29-52 (191)
446 3exa_A TRNA delta(2)-isopenten 89.4 0.18 6.3E-06 51.2 3.1 22 192-213 4-25 (322)
447 1ltq_A Polynucleotide kinase; 89.2 0.18 6.3E-06 51.7 3.1 22 192-213 3-24 (301)
448 1ak2_A Adenylate kinase isoenz 89.2 0.18 6.1E-06 49.6 2.9 22 192-213 17-38 (233)
449 1g41_A Heat shock protein HSLU 89.1 0.19 6.5E-06 54.1 3.2 47 167-213 15-72 (444)
450 2dr3_A UPF0273 protein PH0284; 89.1 0.24 8.1E-06 49.0 3.8 38 192-231 24-61 (247)
451 2eyu_A Twitching motility prot 89.0 0.21 7.3E-06 49.9 3.4 111 191-317 25-136 (261)
452 2ck3_A ATP synthase subunit al 89.0 0.61 2.1E-05 50.6 7.0 107 178-286 151-272 (510)
453 3cmu_A Protein RECA, recombina 89.0 0.38 1.3E-05 61.2 6.2 102 176-286 1412-1515(2050)
454 2vp4_A Deoxynucleoside kinase; 89.0 0.18 6E-06 49.5 2.7 23 191-213 20-42 (230)
455 1q3t_A Cytidylate kinase; nucl 88.9 0.2 6.9E-06 49.3 3.1 24 190-213 15-38 (236)
456 2v3c_C SRP54, signal recogniti 88.9 0.2 6.8E-06 54.1 3.2 23 191-213 99-121 (432)
457 2v9p_A Replication protein E1; 88.9 0.2 7E-06 51.1 3.1 22 192-213 127-148 (305)
458 2ged_A SR-beta, signal recogni 88.9 0.16 5.3E-06 48.1 2.1 25 190-214 47-71 (193)
459 2f9l_A RAB11B, member RAS onco 88.9 0.2 6.8E-06 47.8 2.9 24 191-214 5-28 (199)
460 4akg_A Glutathione S-transfera 88.9 1.4 4.7E-05 58.3 11.3 137 193-345 1269-1431(2695)
461 3zvl_A Bifunctional polynucleo 88.8 0.19 6.6E-06 54.2 3.1 24 190-213 257-280 (416)
462 1cp2_A CP2, nitrogenase iron p 88.8 0.22 7.6E-06 50.1 3.4 37 192-230 2-38 (269)
463 1ls1_A Signal recognition part 88.8 0.23 7.8E-06 50.8 3.4 22 192-213 99-120 (295)
464 3foz_A TRNA delta(2)-isopenten 88.7 0.24 8.2E-06 50.3 3.4 23 191-213 10-32 (316)
465 4edh_A DTMP kinase, thymidylat 88.6 0.57 2E-05 45.1 6.0 22 192-213 7-28 (213)
466 3sop_A Neuronal-specific septi 88.5 0.23 7.7E-06 50.0 3.1 21 193-213 4-24 (270)
467 1nlf_A Regulatory protein REPA 88.5 0.22 7.6E-06 50.5 3.1 22 192-213 31-52 (279)
468 2dyk_A GTP-binding protein; GT 88.5 0.26 8.8E-06 44.8 3.3 23 192-214 2-24 (161)
469 3cf2_A TER ATPase, transitiona 88.4 0.21 7.2E-06 58.1 3.1 48 167-214 477-534 (806)
470 2wjg_A FEOB, ferrous iron tran 88.4 0.3 1E-05 45.8 3.7 24 191-214 7-30 (188)
471 3nh6_A ATP-binding cassette SU 88.3 0.19 6.4E-06 51.5 2.4 22 192-213 81-102 (306)
472 2afh_E Nitrogenase iron protei 88.2 0.27 9.1E-06 50.2 3.5 37 192-230 3-39 (289)
473 2qmh_A HPR kinase/phosphorylas 88.2 0.26 8.8E-06 46.4 3.0 23 192-214 35-57 (205)
474 2ce2_X GTPase HRAS; signaling 88.1 0.23 7.9E-06 45.2 2.7 22 193-214 5-26 (166)
475 3k1j_A LON protease, ATP-depen 88.0 0.46 1.6E-05 54.1 5.7 41 168-213 42-82 (604)
476 1a7j_A Phosphoribulokinase; tr 88.0 0.12 4.1E-06 52.7 0.7 23 191-213 5-27 (290)
477 2bbs_A Cystic fibrosis transme 87.9 0.26 8.8E-06 50.1 3.1 22 192-213 65-86 (290)
478 3gqb_B V-type ATP synthase bet 87.9 0.37 1.3E-05 51.5 4.4 93 193-286 149-261 (464)
479 2nzj_A GTP-binding protein REM 87.9 0.28 9.5E-06 45.3 3.2 24 191-214 4-27 (175)
480 2r8r_A Sensor protein; KDPD, P 87.9 0.26 9E-06 47.5 3.0 36 192-229 7-42 (228)
481 2lkc_A Translation initiation 87.8 0.39 1.3E-05 44.4 4.1 25 190-214 7-31 (178)
482 3kta_A Chromosome segregation 87.6 0.29 9.9E-06 45.8 3.1 21 193-213 28-48 (182)
483 2gj8_A MNME, tRNA modification 87.6 0.28 9.5E-06 45.4 3.0 23 192-214 5-27 (172)
484 3mfy_A V-type ATP synthase alp 87.6 0.45 1.5E-05 52.0 4.8 58 178-241 216-274 (588)
485 3hjn_A DTMP kinase, thymidylat 87.6 0.55 1.9E-05 44.6 5.1 34 193-228 2-35 (197)
486 1z2a_A RAS-related protein RAB 87.6 0.28 9.5E-06 44.9 2.9 24 191-214 5-28 (168)
487 2ocp_A DGK, deoxyguanosine kin 87.5 0.29 1E-05 48.3 3.2 22 192-213 3-24 (241)
488 2c61_A A-type ATP synthase non 87.5 0.55 1.9E-05 50.5 5.5 93 193-285 154-258 (469)
489 3q72_A GTP-binding protein RAD 87.4 0.28 9.5E-06 44.8 2.8 22 193-214 4-25 (166)
490 3fvq_A Fe(3+) IONS import ATP- 87.4 0.28 9.7E-06 51.2 3.1 22 192-213 31-52 (359)
491 1fzq_A ADP-ribosylation factor 87.4 0.44 1.5E-05 44.4 4.3 25 190-214 15-39 (181)
492 3con_A GTPase NRAS; structural 87.4 0.28 9.7E-06 46.1 2.9 23 192-214 22-44 (190)
493 1nij_A Hypothetical protein YJ 87.3 0.27 9.4E-06 50.8 3.0 25 190-214 3-27 (318)
494 3q85_A GTP-binding protein REM 87.3 0.3 1E-05 44.8 3.0 22 192-213 3-24 (169)
495 1z08_A RAS-related protein RAB 87.3 0.37 1.3E-05 44.2 3.6 24 191-214 6-29 (170)
496 1svm_A Large T antigen; AAA+ f 87.2 0.29 9.8E-06 51.7 3.1 23 191-213 169-191 (377)
497 2erx_A GTP-binding protein DI- 87.2 0.31 1E-05 44.8 3.0 23 192-214 4-26 (172)
498 3lv8_A DTMP kinase, thymidylat 87.2 0.61 2.1E-05 45.7 5.2 36 192-228 28-63 (236)
499 3oaa_A ATP synthase subunit al 87.0 0.8 2.7E-05 49.5 6.3 89 193-286 164-264 (513)
500 3cmu_A Protein RECA, recombina 86.9 0.89 3E-05 57.9 7.6 111 168-286 360-471 (2050)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=6.7e-41 Score=383.19 Aligned_cols=268 Identities=18% Similarity=0.227 Sum_probs=220.6
Q ss_pred cccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhc--CccccCCCCcEEEEEeCCcc--CHHHHHHHHHHH
Q 045150 170 VGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYH--SSDVKNKFECCAWVSVSQDY--QFQYLLLRIIKS 245 (841)
Q Consensus 170 vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~ 245 (841)
|||+.++++|.++|........+||+|+||||+||||||+++|+ |.+++.+|+.++||++++.+ +...+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999865333679999999999999999999998 67899999999999999985 899999999999
Q ss_pred hhhccc-cccCCCCCCCHHHHHHHHHHHccCc-eEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchHHhhcCCCc
Q 045150 246 FNIISS-AEEGGLENKSEEDLERCLYKSLQGK-TYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNREVAERSDEK 323 (841)
Q Consensus 246 l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~ 323 (841)
++.... ....+....+...+...+++.|+++ ||||||||||+.+.+ .+.. .+||+||||||++.++..++..
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence 986532 1122333445677889999999996 999999999998754 2221 1699999999999999987644
Q ss_pred ceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHhhhhcCCChh-----------------
Q 045150 324 TYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLGGLLSTKTPQ----------------- 386 (841)
Q Consensus 324 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~----------------- 386 (841)
..+|+|++|++++||+||.+++|.... ++.+.+++++|+++|+|+|||++++|+.|+.+..+
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i 363 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGV 363 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTT
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHH
Confidence 478999999999999999999987643 57888999999999999999999999998765211
Q ss_pred -------------hHHHHHH-----------hhcCCCCCcccChhHHHHHHHHc--CCcCCCC-CCCHHHHHHhHHHHHH
Q 045150 387 -------------EWRLCFL-----------YLSLFPEDFEINVEKLIRLFVAE--GFVPQSE-DRTMEEVAKDNFDELI 439 (841)
Q Consensus 387 -------------~w~~cf~-----------~~~~fp~~~~i~~~~li~~w~ae--g~i~~~~-~~~~e~~~~~~~~~L~ 439 (841)
..+.||+ |||+||+++.|+ +++|+|+ ||+.... +.+++++++ ||++|+
T Consensus 364 ~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~ 438 (549)
T 2a5y_B 364 ECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLS 438 (549)
T ss_dssp CCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTT
T ss_pred HHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHH
Confidence 1127999 999999999998 8999999 9998765 678899888 999999
Q ss_pred Hhhccccccc
Q 045150 440 NRSLIQAEER 449 (841)
Q Consensus 440 ~~~ll~~~~~ 449 (841)
++||++....
T Consensus 439 ~rsLl~~~~~ 448 (549)
T 2a5y_B 439 KRGALLSGKR 448 (549)
T ss_dssp TBSSCSEEEC
T ss_pred HcCCeeEecC
Confidence 9999998653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=6.9e-34 Score=326.83 Aligned_cols=251 Identities=20% Similarity=0.191 Sum_probs=200.1
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCc-EEEEEeCCccCHHHHHHHHHHHh
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFEC-CAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
..|||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|+..+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d--~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR--PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC--SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC--CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45999999999999998643 4689999999999999999999987788999997 99999999999999988888876
Q ss_pred hhccccccCCCC-----CCCHHHHHHHHHHHc---cCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchHHhh
Q 045150 247 NIISSAEEGGLE-----NKSEEDLERCLYKSL---QGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNREVAE 318 (841)
Q Consensus 247 ~~~~~~~~~~~~-----~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (841)
+........... ..+.+.+...+++.| .+||+||||||||+.+.|+.+. +||+||||||++.++.
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHH
Confidence 543211000000 012345566777766 7899999999999988888752 5899999999999886
Q ss_pred cCCCcceeEecC------CCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHhhhhcCC--ChhhHH-
Q 045150 319 RSDEKTYVHKLR------FLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLGGLLSTK--TPQEWR- 389 (841)
Q Consensus 319 ~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~--~~~~w~- 389 (841)
.+... ..+.++ +|+++|||+||+++. +.. ..++..+| |+|+|||++++|+.|+.+ ..++|+
T Consensus 280 ~l~g~-~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 280 FLSAA-TTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHH-SSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred hcCCC-eEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 43322 356666 899999999999984 322 22333444 999999999999999877 566664
Q ss_pred -----------------------HHHHhhcCCCCCcccChhHHHHHHHHcCCcCCCCCCCHHHHHHhHHHHHHHhhcccc
Q 045150 390 -----------------------LCFLYLSLFPEDFEINVEKLIRLFVAEGFVPQSEDRTMEEVAKDNFDELINRSLIQA 446 (841)
Q Consensus 390 -----------------------~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~~~~L~~~~ll~~ 446 (841)
.||+|||+||+++.|+++.++.+|+++| ++.++.++++|+++|||+.
T Consensus 350 ~~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp CSCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTSSSSSB
T ss_pred CChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHhhCCEEE
Confidence 7999999999999999999999999987 1348899999999999997
Q ss_pred c
Q 045150 447 E 447 (841)
Q Consensus 447 ~ 447 (841)
.
T Consensus 420 d 420 (1221)
T 1vt4_I 420 Q 420 (1221)
T ss_dssp C
T ss_pred e
Confidence 4
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.7e-31 Score=339.34 Aligned_cols=263 Identities=21% Similarity=0.305 Sum_probs=210.9
Q ss_pred ccCCCCCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccc-cCCC-CcEEEEEeCCccC--HHH
Q 045150 162 WFDVEENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDV-KNKF-ECCAWVSVSQDYQ--FQY 237 (841)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~ 237 (841)
.+.....||||++++++|.++|...+. ..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ...
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~-~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNG-EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTT-SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccC-CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 334556799999999999999976544 6799999999999999999999997543 4555 6688999998544 445
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCc--eEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchH
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGK--TYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNRE 315 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 315 (841)
.+..++.++....... .....+.+.+...++..+.++ ||||||||||+...|+.+ ++||+||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFS--QRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTC--SSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccc--cCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 5777777776543211 122345688899999999877 999999999998766653 56899999999999
Q ss_pred HhhcCCCcceeEecCC-CChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHhhhhcCCChhhHH-----
Q 045150 316 VAERSDEKTYVHKLRF-LRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLGGLLSTKTPQEWR----- 389 (841)
Q Consensus 316 v~~~~~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~~w~----- 389 (841)
++..+......+++.+ |+++++++||...++.. .+.+.+++++|+++|+|+|||++++|++|+.+. ..|+
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 9865544447899996 99999999999988433 345567799999999999999999999997642 1111
Q ss_pred ------------------------------------HHHHhhcCCCCCcccChhHHHHHHHHcCCcCCCCCCCHHHHHHh
Q 045150 390 ------------------------------------LCFLYLSLFPEDFEINVEKLIRLFVAEGFVPQSEDRTMEEVAKD 433 (841)
Q Consensus 390 ------------------------------------~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~ 433 (841)
.||+|||+||+++.|+++.++.+|.++ ++.+++
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~ 413 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVED 413 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHH
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHH
Confidence 899999999999999999999999665 355889
Q ss_pred HHHHHHHhhccccccc
Q 045150 434 NFDELINRSLIQAEER 449 (841)
Q Consensus 434 ~~~~L~~~~ll~~~~~ 449 (841)
++++|+++||++....
T Consensus 414 ~l~~L~~~sl~~~~~~ 429 (1249)
T 3sfz_A 414 ILQEFVNKSLLFCNRN 429 (1249)
T ss_dssp HHHHHHHTTSCEEEES
T ss_pred HHHHHHhccceEEecC
Confidence 9999999999997643
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=5.5e-28 Score=280.93 Aligned_cols=257 Identities=21% Similarity=0.311 Sum_probs=196.4
Q ss_pred CCCCCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccc-cCCC-CcEEEEEeCCccCHHHHHHH
Q 045150 164 DVEENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDV-KNKF-ECCAWVSVSQDYQFQYLLLR 241 (841)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~~ 241 (841)
.....+|||+.++++|.++|..... ..++|+|+||||+||||||+++|++.++ +.+| +.++|++++.. +...++..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKG-EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTT-SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccC-CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 3456799999999999999986433 5789999999999999999999997655 7889 57999999875 34444444
Q ss_pred HH---HHhhhccccccCCCCCCCHHHHHHHHHHHccC--ceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchHH
Q 045150 242 II---KSFNIISSAEEGGLENKSEEDLERCLYKSLQG--KTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNREV 316 (841)
Q Consensus 242 i~---~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 316 (841)
+. ..++.... .......+.+.+...+++.+.+ +++||||||+|+...++. + +.|++||||||+..+
T Consensus 199 l~~l~~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 199 LQNLCTRLDQDES--FSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHCSSCC--SCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEEESCGGG
T ss_pred HHHHHHHhccccc--cccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeEEEECCCcHH
Confidence 43 34432111 1112234567778888888865 799999999998765443 2 458999999999998
Q ss_pred hhcCCCcceeEec---CCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHhhhhcCCChhhH-----
Q 045150 317 AERSDEKTYVHKL---RFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLGGLLSTKTPQEW----- 388 (841)
Q Consensus 317 ~~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~~w----- 388 (841)
+..+.. ..+++ ++|+.+++++||...++.. .....+.+.+|+++|+|+|||+..+|+.++... ..|
T Consensus 270 ~~~~~~--~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~ 343 (591)
T 1z6t_A 270 TDSVMG--PKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLK 343 (591)
T ss_dssp GTTCCS--CEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHhcCC--CceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHH
Confidence 876543 33444 5899999999999988642 233456789999999999999999999986542 111
Q ss_pred ------------------------------------HHHHHhhcCCCCCcccChhHHHHHHHHcCCcCCCCCCCHHHHHH
Q 045150 389 ------------------------------------RLCFLYLSLFPEDFEINVEKLIRLFVAEGFVPQSEDRTMEEVAK 432 (841)
Q Consensus 389 ------------------------------------~~cf~~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~ 432 (841)
+.||.+||+||+++.|+.+.+...|.++ .+.+.
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~ 412 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVE 412 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHH
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHH
Confidence 1899999999999999999999999653 23478
Q ss_pred hHHHHHHHhhcccccc
Q 045150 433 DNFDELINRSLIQAEE 448 (841)
Q Consensus 433 ~~~~~L~~~~ll~~~~ 448 (841)
.++.+|+++||++...
T Consensus 413 ~~l~~L~~~~Ll~~~~ 428 (591)
T 1z6t_A 413 DILQEFVNKSLLFCDR 428 (591)
T ss_dssp HHHHHHHHTTSSEEEE
T ss_pred HHHHHHHhCcCeEEec
Confidence 8999999999998543
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=3.6e-24 Score=256.05 Aligned_cols=155 Identities=21% Similarity=0.211 Sum_probs=93.6
Q ss_pred CceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-Cccc-ccCcccccc
Q 045150 509 FLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIV-QLPPETDMM 586 (841)
Q Consensus 509 ~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~-~lp~~~~~L 586 (841)
++.|++|++++|. +.+ .+|..++++++|++|+|++|.....+|..++++++|++|+++ |.+. .+|..+..+
T Consensus 393 ~~~L~~L~L~~n~------l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 465 (768)
T 3rgz_A 393 KNTLQELYLQNNG------FTG-KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465 (768)
T ss_dssp TCCCCEEECCSSE------EEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cCCccEEECCCCc------ccc-ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 4556666666665 443 456666666667777776663333566666666677777776 4444 466666666
Q ss_pred ccccceec---ccc--cccCCccccccccccccccc--chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCc
Q 045150 587 RELRHLIG---KLI--GTLPIENLTNLQTLKYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNL 659 (841)
Q Consensus 587 ~~L~~L~~---~~~--~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L 659 (841)
++|++|.. ... .+..++.+++|+.|++.+|. +..+..++.+++|+.|++++|... ...+ ..+..+++|
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~----~~~p-~~l~~l~~L 540 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS----GNIP-AELGDCRSL 540 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE----EECC-GGGGGCTTC
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc----CcCC-HHHcCCCCC
Confidence 66666632 222 22236666777777777666 355666667777777777666522 1122 566667777
Q ss_pred ceEEeeecCCCccCCC
Q 045150 660 QFLSVNLSDGTVVLPQ 675 (841)
Q Consensus 660 ~~L~l~~~~~~~~~~~ 675 (841)
+.|++++|.+.+..|.
T Consensus 541 ~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 541 IWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CEEECCSSEEESBCCG
T ss_pred CEEECCCCccCCcCCh
Confidence 7777777766655554
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=5.9e-23 Score=222.08 Aligned_cols=297 Identities=19% Similarity=0.147 Sum_probs=205.4
Q ss_pred ccceEeeeeecCCCeeeeccCCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccc
Q 045150 460 SSCRRQAIYSETPSFFWLHHSNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGK 539 (841)
Q Consensus 460 ~~~r~l~i~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~ 539 (841)
..++++.+..+....++.-..+++++.|.+.++.... .+. +..+++|++|++++|. ++ .++ .+..
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~-----~~~-~~~l~~L~~L~L~~n~------i~--~~~-~~~~ 108 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD-----ISP-LSNLVKLTNLYIGTNK------IT--DIS-ALQN 108 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSC------CC--CCG-GGTT
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCcccc-----chh-hhcCCcCCEEEccCCc------cc--Cch-HHcC
Confidence 4577777775555444311267888888888876532 222 7888888888888887 76 454 5888
Q ss_pred cCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceec---ccccccCCccccccccccccc
Q 045150 540 LIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIG---KLIGTLPIENLTNLQTLKYVR 615 (841)
Q Consensus 540 L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~---~~~~~~~i~~l~~L~~L~l~~ 615 (841)
+++|++|++++| .+..+|. +..+++|++|+++ |.....+..+..+++|++|.. ......+++.+++|+.|++.+
T Consensus 109 l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 109 LTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNY 186 (347)
T ss_dssp CTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTT
T ss_pred CCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccC
Confidence 888888888888 6777766 7888888888888 545555556788888888843 223333377888888888888
Q ss_pred ccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCccccee
Q 045150 616 CKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDL 695 (841)
Q Consensus 616 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L 695 (841)
|.-.....+..+++|+.|++.+|.... . ..+..+++|+.|++++|.+.. +..+..+++|+.|
T Consensus 187 n~l~~~~~~~~l~~L~~L~l~~n~l~~-----~--~~~~~~~~L~~L~l~~n~l~~-----------~~~~~~l~~L~~L 248 (347)
T 4fmz_A 187 NQIEDISPLASLTSLHYFTAYVNQITD-----I--TPVANMTRLNSLKIGNNKITD-----------LSPLANLSQLTWL 248 (347)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCC-----C--GGGGGCTTCCEEECCSSCCCC-----------CGGGTTCTTCCEE
T ss_pred CcccccccccCCCccceeecccCCCCC-----C--chhhcCCcCCEEEccCCccCC-----------CcchhcCCCCCEE
Confidence 873333337788888888888776331 1 226778888888888885432 1125567788888
Q ss_pred EeccccCCCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceecc
Q 045150 696 RLTGRMTTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLD 775 (841)
Q Consensus 696 ~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~ 775 (841)
++++|...-...+..+ ++|+.|++++|.++.. +.+..+++|+.|++++|.+++... .....+++|+.|+++
T Consensus 249 ~l~~n~l~~~~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~------~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 249 EIGTNQISDINAVKDL-TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM------EVIGGLTNLTTLFLS 319 (347)
T ss_dssp ECCSSCCCCCGGGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH------HHHHTCTTCSEEECC
T ss_pred ECCCCccCCChhHhcC-CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh------hHhhccccCCEEEcc
Confidence 8888654433345555 8888888888887653 567888888888888876543221 112357888888888
Q ss_pred ccccCceEEEEccCccccccccccccccC
Q 045150 776 AVEVGIVEWQVEERAMPMLRGLKIPSDIP 804 (841)
Q Consensus 776 ~~~~~l~~~~~~~~~~p~L~~L~l~~~c~ 804 (841)
+|+ ++.++. ...+++|++|+++ +|+
T Consensus 320 ~n~--l~~~~~-~~~l~~L~~L~l~-~N~ 344 (347)
T 4fmz_A 320 QNH--ITDIRP-LASLSKMDSADFA-NQV 344 (347)
T ss_dssp SSS--CCCCGG-GGGCTTCSEESSS-CC-
T ss_pred CCc--cccccC-hhhhhccceeehh-hhc
Confidence 887 666543 5678888888888 764
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=4.9e-23 Score=240.47 Aligned_cols=226 Identities=14% Similarity=0.154 Sum_probs=156.0
Q ss_pred hhHHhccCceeeEEEeecCCccccccccccc-----------------chhhcc--ccCcceeeecCCCcCccccCcccC
Q 045150 502 LAPLFKRFLLLRVLEIEESGYFSRMLFDNRL-----------------HNKKLG--KLIHLKYLGIRGTTFIRDFPSSIF 562 (841)
Q Consensus 502 ~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~-----------------~p~~i~--~L~~L~~L~L~~~~~~~~lp~~i~ 562 (841)
++..+.++++|++|+|++|. +++ . +|..++ ++++|++|+|++|.....+|..++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~------l~~-~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSP------FVA-ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCC------CCG-GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCHHHhcccCCCEEECcCCc------ccc-ccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 45668899999999999999 773 2 899998 999999999999966788999999
Q ss_pred CCCCCCeeecC-Cc-cc--ccCcccccc------ccccceec---ccc-ccc--CCccccccccccccccc-c-hhcccc
Q 045150 563 NLPGLQTLDLS-RC-IV--QLPPETDMM------RELRHLIG---KLI-GTL--PIENLTNLQTLKYVRCK-S-WIRVNT 624 (841)
Q Consensus 563 ~L~~L~~L~L~-~~-~~--~lp~~~~~L------~~L~~L~~---~~~-~~~--~i~~l~~L~~L~l~~~~-~-~~~~~l 624 (841)
++++|++|+++ |. +. .+|..++++ ++|++|.. ... .+. .++.+++|+.|++.+|. . ..+ .+
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 99999999999 65 65 488888887 89999843 222 233 47889999999999887 3 566 88
Q ss_pred ccccCCCceEEeccCCCCcCcccccHHHHhccCC-cceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC
Q 045150 625 AKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKN-LQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT 703 (841)
Q Consensus 625 ~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~ 703 (841)
+.+++|+.|++++|... .++ ..+..+++ |+.|++++|.+. .+|..+.. ..+++|+.|++++|...
T Consensus 350 ~~l~~L~~L~L~~N~l~-----~lp-~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~-------~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-----EIP-ANFCGFTEQVENLSFAHNKLK-YIPNIFDA-------KSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp EEEEEESEEECCSSEEE-----ECC-TTSEEECTTCCEEECCSSCCS-SCCSCCCT-------TCSSCEEEEECCSSCTT
T ss_pred CCCCCCCEEECCCCccc-----ccc-HhhhhhcccCcEEEccCCcCc-ccchhhhh-------cccCccCEEECcCCcCC
Confidence 88999999999887632 333 56778888 999999988765 34432211 11234555555554221
Q ss_pred --CCcccc-------ccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCC
Q 045150 704 --LPKDMH-------VLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDS 750 (841)
Q Consensus 704 --~p~~~~-------~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~ 750 (841)
.|.++. .+ ++|+.|+|++|.++..+...+..+++|+.|+|++|.++
T Consensus 416 ~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp TTTTCSSCTTCSSCCCC-CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred CcchhhhcccccccccC-CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 333333 22 45555555555554333333444555555555555444
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=1.1e-22 Score=243.11 Aligned_cols=117 Identities=16% Similarity=0.074 Sum_probs=77.7
Q ss_pred CCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCce-EEEEccCcc
Q 045150 713 PNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIV-EWQVEERAM 791 (841)
Q Consensus 713 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~-~~~~~~~~~ 791 (841)
++|+.|+|++|.+++..|..++++++|+.|+|++|.+++.. +...+.+++|+.|++++|. +. .+|.....+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i------p~~l~~L~~L~~LdLs~N~--l~g~ip~~l~~l 703 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI------PDEVGDLRGLNILDLSSNK--LDGRIPQAMSAL 703 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC------CGGGGGCTTCCEEECCSSC--CEECCCGGGGGC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC------ChHHhCCCCCCEEECCCCc--ccCcCChHHhCC
Confidence 67899999999999888999999999999999999887533 2234568899999999997 66 556667789
Q ss_pred ccccccccccccCCC-CCCcccc--cc------------CCchhhhhhccc-ccccccccccCCCC
Q 045150 792 PMLRGLKIPSDIPNL-NIPERLR--SI------------PLPAVWEFDESK-YAYDLWLLLHHPLI 841 (841)
Q Consensus 792 p~L~~L~l~~~c~~L-~lp~~l~--~l------------~~~~~~~~~~~~-~~~~~~~~~~i~~~ 841 (841)
++|++|+++ +|+-- .+|.+-+ .+ +.| + ..|.. .+++|.+++|+|.+
T Consensus 704 ~~L~~L~ls-~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~--l-~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 704 TMLTEIDLS-NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP--L-PRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp CCCSEEECC-SSEEEEECCSSSSGGGSCGGGGCSCTEEESTT--S-CCCCSCC-------------
T ss_pred CCCCEEECc-CCcccccCCCchhhccCCHHHhcCCchhcCCC--C-cCCCCCccCCCCCCCCcccc
Confidence 999999999 66433 7776422 11 222 2 24555 77899999999864
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=3.7e-22 Score=224.75 Aligned_cols=302 Identities=21% Similarity=0.179 Sum_probs=200.2
Q ss_pred ccceEeeeeecCCCeeeeccCCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccc
Q 045150 460 SSCRRQAIYSETPSFFWLHHSNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGK 539 (841)
Q Consensus 460 ~~~r~l~i~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~ 539 (841)
..++.+.+..+....++.-..+++++.|.+.++.... .+. +..+++|++|++++|. +. ..+. +++
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~-----~~~-~~~l~~L~~L~l~~n~------l~--~~~~-~~~ 110 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-----ITP-LKNLTKLVDILMNNNQ------IA--DITP-LAN 110 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSC------CC--CCGG-GTT
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCC-----chh-hhccccCCEEECCCCc------cc--cChh-hcC
Confidence 4567777765554444321278889999998877642 223 7889999999999998 77 5554 888
Q ss_pred cCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceec--ccccccCCcccccccccccccc
Q 045150 540 LIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIG--KLIGTLPIENLTNLQTLKYVRC 616 (841)
Q Consensus 540 L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~--~~~~~~~i~~l~~L~~L~l~~~ 616 (841)
+++|++|++++| .+..+|. +.++++|++|+++ |.+..+| .+..+++|++|.. ......+++.+++|+.|++.++
T Consensus 111 l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 111 LTNLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187 (466)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCC-CCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCC
Confidence 999999999998 6777776 8899999999999 6666655 4778888888743 2233334777778888887777
Q ss_pred cchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCc-------------ccccC
Q 045150 617 KSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSN-------------AFASL 683 (841)
Q Consensus 617 ~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-------------~~~~l 683 (841)
.-.....+..+++|+.|++++|..... ..+..+++|+.|++++|.+.... .+. .+..+
T Consensus 188 ~l~~~~~l~~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 188 KVSDISVLAKLTNLESLIATNNQISDI-------TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSCCCCC-------GGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCC
T ss_pred cCCCChhhccCCCCCEEEecCCccccc-------ccccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCccccc
Confidence 633334567777777777776653311 12445666666666666443210 000 00111
Q ss_pred CCCCCCcccceeEeccccCC-CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEc
Q 045150 684 QPLSHCQRLVDLRLTGRMTT-LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCR 762 (841)
Q Consensus 684 ~~l~~~~~L~~L~L~~~~~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 762 (841)
..+..+++|+.|++++|... +|. +..+ ++|+.|+|++|.+.+.. .++.+++|+.|+|++|.+++...
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~~~-~~~l-~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~-------- 326 (466)
T 1o6v_A 259 APLSGLTKLTELKLGANQISNISP-LAGL-TALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP-------- 326 (466)
T ss_dssp GGGTTCTTCSEEECCSSCCCCCGG-GTTC-TTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG--------
T ss_pred hhhhcCCCCCEEECCCCccCcccc-ccCC-CccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCchh--------
Confidence 12455667777777776433 333 4444 77888888888775433 37778888888888776655331
Q ss_pred CCCcccccceeccccccCceEEEEccCccccccccccccccC
Q 045150 763 AEGFPLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIP 804 (841)
Q Consensus 763 ~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~ 804 (841)
...+++|+.|++++|. ++.+ .....+++|+.|+++ +|.
T Consensus 327 ~~~l~~L~~L~l~~n~--l~~~-~~l~~l~~L~~L~l~-~n~ 364 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNK--VSDV-SSLANLTNINWLSAG-HNQ 364 (466)
T ss_dssp GGGCTTCCEEECCSSC--CCCC-GGGTTCTTCCEEECC-SSC
T ss_pred hccCccCCEeECCCCc--cCCc-hhhccCCCCCEEeCC-CCc
Confidence 2467888999998886 7665 245678899999998 664
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=7.5e-23 Score=242.77 Aligned_cols=230 Identities=12% Similarity=0.016 Sum_probs=154.1
Q ss_pred CCCceeeEEEeecccccc--cc-----------cchhHHhc--cCceeeEEEeecCCcccccccccccchhhccccCcce
Q 045150 480 SNSLSRSLLFFNENVTLF--EE-----------RDLAPLFK--RFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLK 544 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~--~~-----------~~~~~~~~--~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~ 544 (841)
.+++|+.|.+.++..... .. ..++..+. ++++|++|+|++|. +.+ .+|..++++++|+
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~------l~~-~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP------NMT-QLPDFLYDLPELQ 518 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT------TCC-SCCGGGGGCSSCC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC------CCc-cChHHHhCCCCCC
Confidence 788999999998876420 00 01344444 89999999999998 554 7888999999999
Q ss_pred eeecCCCcCcc--ccCcccCCCC-------CCCeeecC-CcccccCc--cccccccccceec---ccccccCCccccccc
Q 045150 545 YLGIRGTTFIR--DFPSSIFNLP-------GLQTLDLS-RCIVQLPP--ETDMMRELRHLIG---KLIGTLPIENLTNLQ 609 (841)
Q Consensus 545 ~L~L~~~~~~~--~lp~~i~~L~-------~L~~L~L~-~~~~~lp~--~~~~L~~L~~L~~---~~~~~~~i~~l~~L~ 609 (841)
+|+|++|..+. .+|..++++. +|++|+|+ |.+..+|. .+.++++|++|.. .......++.+++|+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~ 598 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLT 598 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEES
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcce
Confidence 99999994254 5887666555 99999999 77888998 8999999999943 222222588899999
Q ss_pred cccccccc-chhccccccccC-CCceEEeccCCCCcCcccccHHHHhcc--CCcceEEeeecCCCccCCCCCcccccCCC
Q 045150 610 TLKYVRCK-SWIRVNTAKLVN-LRELHIVGGDGQSMGEMEFSFESIAKL--KNLQFLSVNLSDGTVVLPQSSNAFASLQP 685 (841)
Q Consensus 610 ~L~l~~~~-~~~~~~l~~l~~-L~~L~l~~~~~~~~g~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 685 (841)
.|++.+|. ...+..+..+++ |+.|++++|... .++ ..+..+ ++|+.|++++|.+.+..|.....+.
T Consensus 599 ~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-----~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~---- 668 (876)
T 4ecn_A 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-----YIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD---- 668 (876)
T ss_dssp EEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-----SCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT----
T ss_pred EEECcCCccccchHHHhhccccCCEEECcCCCCC-----cCc-hhhhccccCCCCEEECcCCcCCCccccchhhhc----
Confidence 99999888 666777889998 999999988744 222 344444 3489999999887765442211110
Q ss_pred CCCCcccceeEecccc-CCCCccccccCCCccEEEEEeccCC
Q 045150 686 LSHCQRLVDLRLTGRM-TTLPKDMHVLLPNLECLSLKVVLPE 726 (841)
Q Consensus 686 l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~ 726 (841)
...+++|+.|++++|. ..+|.++...+++|+.|+|++|.+.
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence 0012345555555432 2344443322244555555544443
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=3.5e-22 Score=233.21 Aligned_cols=320 Identities=16% Similarity=0.100 Sum_probs=235.9
Q ss_pred ccceEeeeeecCCC-eeeecc-CCCceeeEEEeecc-cccccccchhHHhcc------CceeeEEEeecCCccccccccc
Q 045150 460 SSCRRQAIYSETPS-FFWLHH-SNSLSRSLLFFNEN-VTLFEERDLAPLFKR------FLLLRVLEIEESGYFSRMLFDN 530 (841)
Q Consensus 460 ~~~r~l~i~~~~~~-~~~~~~-~~~~lr~L~l~~~~-~~~~~~~~~~~~~~~------~~~Lr~L~L~~~~~~~~~~l~~ 530 (841)
..++.+.+..+... .++... .+++|+.|.+.++. .. ...++..+.. +++|++|++++|. ++
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~---~~~lp~~~~~L~~~~~l~~L~~L~L~~n~------l~- 318 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS---GEQLKDDWQALADAPVGEKIQIIYIGYNN------LK- 318 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC---HHHHHHHHHHHHHSGGGGTCCEEECCSSC------CS-
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc---cccchHHHHhhhccccCCCCCEEECCCCc------CC-
Confidence 46788888855533 333223 78899999998886 42 1023444544 4999999999999 88
Q ss_pred ccchh--hccccCcceeeecCCCcCcc-ccCcccCCCCCCCeeecC-CcccccCcccccccc-ccceec---ccc-cccC
Q 045150 531 RLHNK--KLGKLIHLKYLGIRGTTFIR-DFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRE-LRHLIG---KLI-GTLP 601 (841)
Q Consensus 531 ~~~p~--~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~-L~~L~~---~~~-~~~~ 601 (841)
.+|. .++++++|++|++++| .+. .+| .++++++|++|+++ |.+..+|..+.++++ |++|.. ... .+..
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~ 395 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYN-QLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI 395 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSC-CCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSC
T ss_pred -ccCchhhhccCCCCCEEeCcCC-cCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchh
Confidence 7898 8999999999999999 566 899 89999999999999 778899999999999 999943 222 2222
Q ss_pred Cccc--cccccccccccc--chhccccc-------cccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCC
Q 045150 602 IENL--TNLQTLKYVRCK--SWIRVNTA-------KLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGT 670 (841)
Q Consensus 602 i~~l--~~L~~L~l~~~~--~~~~~~l~-------~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~ 670 (841)
++.+ ++|+.|++++|. +..+..+. .+++|+.|++++|... .++...+..+++|+.|++++|.+.
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-----~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-----KFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-----SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-----cCCHHHHccCCCCCEEECCCCCCC
Confidence 4544 489999999987 45566676 7889999999998744 233245667899999999999776
Q ss_pred ccCCCCCcccccCCCCCCCcccceeEecccc-CCCCcccc--ccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecc
Q 045150 671 VVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPKDMH--VLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFY 747 (841)
Q Consensus 671 ~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~~~~--~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N 747 (841)
.+|...... ....+..+++|+.|++++|. ..+|..+. .+ ++|+.|+|++|.+++ .+..++.+++|+.|+|++|
T Consensus 471 -~i~~~~~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l-~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 471 -EIPKNSLKD-ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL-PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp -BCCSSSSEE-TTEECTTGGGCCEEECCSSCCCBCCGGGSTTTC-TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred -CcCHHHhcc-ccccccccCCccEEECcCCcCCccChhhhhccC-CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence 333322111 00113345689999999974 45888887 65 999999999999986 6778899999999999765
Q ss_pred cCCCCCccccceEEcCCCcccccceeccccccCceEEEEccCccccccccccccccCCC
Q 045150 748 RDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIPNL 806 (841)
Q Consensus 748 ~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~~L 806 (841)
+..+.......++.....+++|+.|++++|. ++.+|.. .+++|+.|+++ +|+-.
T Consensus 547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~--l~~ip~~--~~~~L~~L~Ls-~N~l~ 600 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSND--IRKVNEK--ITPNISVLDIK-DNPNI 600 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSC--CCBCCSC--CCTTCCEEECC-SCTTC
T ss_pred cccccCcccccChHHHhcCCCCCEEECCCCc--CCccCHh--HhCcCCEEECc-CCCCc
Confidence 4221111112223334568999999999997 7777654 34899999999 88644
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=7.4e-22 Score=234.22 Aligned_cols=320 Identities=16% Similarity=0.100 Sum_probs=225.9
Q ss_pred ccceEeeeeecCCC-eeeecc-CCCceeeEEEeecc-cccccccchhHHhc-------cCceeeEEEeecCCcccccccc
Q 045150 460 SSCRRQAIYSETPS-FFWLHH-SNSLSRSLLFFNEN-VTLFEERDLAPLFK-------RFLLLRVLEIEESGYFSRMLFD 529 (841)
Q Consensus 460 ~~~r~l~i~~~~~~-~~~~~~-~~~~lr~L~l~~~~-~~~~~~~~~~~~~~-------~~~~Lr~L~L~~~~~~~~~~l~ 529 (841)
..++.+.+..+... .++... .+++|+.|.+.++. .. ...++..+. .+++|++|+|++|. +.
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls---g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~------L~ 561 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS---AAQLKADWTRLADDEDTGPKIQIFYMGYNN------LE 561 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC---HHHHHHHHHHHHHCTTTTTTCCEEECCSSC------CC
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc---cccchHHHHhhhhcccccCCccEEEeeCCc------CC
Confidence 45778888755433 333223 78899999998876 32 102333333 44589999999998 87
Q ss_pred cccchh--hccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCcccccccc-ccceec---ccc-cccC
Q 045150 530 NRLHNK--KLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRE-LRHLIG---KLI-GTLP 601 (841)
Q Consensus 530 ~~~~p~--~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~-L~~L~~---~~~-~~~~ 601 (841)
.+|. .++++++|++|+|++| .+..+| .++++++|++|+|+ |.+..+|..+.++++ |++|.. ... .+..
T Consensus 562 --~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~ 637 (876)
T 4ecn_A 562 --EFPASASLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637 (876)
T ss_dssp --BCCCHHHHTTCTTCCEEECTTS-CCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSC
T ss_pred --ccCChhhhhcCCCCCEEECCCC-Ccccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchh
Confidence 7888 8999999999999999 667888 78999999999999 777789988999998 999843 222 2222
Q ss_pred Ccccc--ccccccccccc-chhcc----ccc--cccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCcc
Q 045150 602 IENLT--NLQTLKYVRCK-SWIRV----NTA--KLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVV 672 (841)
Q Consensus 602 i~~l~--~L~~L~l~~~~-~~~~~----~l~--~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 672 (841)
+..++ +|+.|++++|. ...++ .+. .+++|+.|++++|... .++...+..+++|+.|+|++|.+. .
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-----~lp~~~~~~l~~L~~L~Ls~N~L~-~ 711 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-----KFPTELFATGSPISTIILSNNLMT-S 711 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-----SCCHHHHHTTCCCSEEECCSCCCS-C
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-----ccCHHHHccCCCCCEEECCCCcCC-c
Confidence 44444 48999998887 22222 222 3458999999988743 333244568899999999999776 3
Q ss_pred CCCCCcccccCCCCCCCcccceeEecccc-CCCCcccc--ccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccC
Q 045150 673 LPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPKDMH--VLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRD 749 (841)
Q Consensus 673 ~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~~~~--~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l 749 (841)
+|...... ....+.++++|+.|+|++|. ..+|..+. .+ ++|+.|+|++|.+++ .+..++.+++|+.|+|++|..
T Consensus 712 ip~~~~~~-~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l-~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ 788 (876)
T 4ecn_A 712 IPENSLKP-KDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL-PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788 (876)
T ss_dssp CCTTSSSC-TTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTC-TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBC
T ss_pred cChHHhcc-ccccccccCCccEEECCCCCCccchHHhhhccC-CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCC
Confidence 33332111 01124456799999999874 45888886 65 999999999999976 577888999999999987532
Q ss_pred CCCCccccceEEcCCCcccccceeccccccCceEEEEccCccccccccccccccCCC
Q 045150 750 SGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIPNL 806 (841)
Q Consensus 750 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~~L 806 (841)
.+.......++.....+++|+.|++++|. +..+|.. .+++|+.|+|+ +|+-.
T Consensus 789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~--L~~Ip~~--l~~~L~~LdLs-~N~l~ 840 (876)
T 4ecn_A 789 AEGNRILRQWPTGITTCPSLIQLQIGSND--IRKVDEK--LTPQLYILDIA-DNPNI 840 (876)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSC--CCBCCSC--CCSSSCEEECC-SCTTC
T ss_pred cccccccccChHHHhcCCCCCEEECCCCC--CCccCHh--hcCCCCEEECC-CCCCC
Confidence 11111112223334568999999999997 7777654 44899999999 88744
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=2.7e-22 Score=225.53 Aligned_cols=171 Identities=15% Similarity=0.101 Sum_probs=107.2
Q ss_pred cCccceEeeeeecCCCeeeecc--CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchh
Q 045150 458 VQSSCRRQAIYSETPSFFWLHH--SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNK 535 (841)
Q Consensus 458 ~~~~~r~l~i~~~~~~~~~~~~--~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~ 535 (841)
.+..++++.+..+....+.... .+++|+.|.+.++... ....+..|.++++|++|+|++|. +.. ..|.
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~---~~i~~~~~~~l~~L~~L~Ls~n~------l~~-~~~~ 97 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG---LVIRNNTFRGLSSLIILKLDYNQ------FLQ-LETG 97 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT---CEECTTTTTTCTTCCEEECTTCT------TCE-ECTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCccc---ceECcccccccccCCEEeCCCCc------cCc-cChh
Confidence 4566788888766666554333 7788888888777542 12334567788888888888888 663 4477
Q ss_pred hccccCcceeeecCCCcCcc-ccCcc--cCCCCCCCeeecC-Cccccc-Ccc-ccccccccceec---cccc--ccCCcc
Q 045150 536 KLGKLIHLKYLGIRGTTFIR-DFPSS--IFNLPGLQTLDLS-RCIVQL-PPE-TDMMRELRHLIG---KLIG--TLPIEN 604 (841)
Q Consensus 536 ~i~~L~~L~~L~L~~~~~~~-~lp~~--i~~L~~L~~L~L~-~~~~~l-p~~-~~~L~~L~~L~~---~~~~--~~~i~~ 604 (841)
.++++++|++|+|++| .+. ..|.. +.++++|++|+++ |.+..+ |.. +.++++|++|.. .... +..+..
T Consensus 98 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 98 AFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred hccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 7888888888888888 444 34444 7788888888888 666665 444 678888888843 1111 122333
Q ss_pred c--cccccccccccc-chhc---------cccccccCCCceEEeccC
Q 045150 605 L--TNLQTLKYVRCK-SWIR---------VNTAKLVNLRELHIVGGD 639 (841)
Q Consensus 605 l--~~L~~L~l~~~~-~~~~---------~~l~~l~~L~~L~l~~~~ 639 (841)
+ .+|+.|++.++. ...+ ..+..+++|+.|++++|.
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence 3 455566655554 1110 112344566666666664
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=2.8e-22 Score=234.14 Aligned_cols=327 Identities=15% Similarity=0.094 Sum_probs=201.7
Q ss_pred cCccceEeeeeecCCCeeeecc--CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchh
Q 045150 458 VQSSCRRQAIYSETPSFFWLHH--SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNK 535 (841)
Q Consensus 458 ~~~~~r~l~i~~~~~~~~~~~~--~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~ 535 (841)
.+..++++.+..+....++... .+++|+.|.+.++.... ..+..|.++++|++|+|++|. ++. ..|.
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----i~~~~~~~l~~L~~L~Ls~n~------l~~-~~p~ 98 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET----IEDKAWHGLHHLSNLILTGNP------IQS-FSPG 98 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCC------CCC-CCTT
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc----cCHHHhhchhhcCEeECCCCc------ccc-cChh
Confidence 4566777777766666555433 67788888887776532 344567777778888888777 652 3366
Q ss_pred hccccCcceeeecCCCcCccccC-cccCCCCCCCeeecC-Cccc--ccCccccccccccceec---cccc--ccCC----
Q 045150 536 KLGKLIHLKYLGIRGTTFIRDFP-SSIFNLPGLQTLDLS-RCIV--QLPPETDMMRELRHLIG---KLIG--TLPI---- 602 (841)
Q Consensus 536 ~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~-~~~~--~lp~~~~~L~~L~~L~~---~~~~--~~~i---- 602 (841)
.|+++++|++|+|++| .+..+| ..++++++|++|+++ |.+. .+|..++++++|++|.. .... +..+
T Consensus 99 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 99 SFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp SSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred hcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 7777777777777777 455444 557777777777777 5544 35666777777776632 1000 0001
Q ss_pred --------------------------------------------------------------------------------
Q 045150 603 -------------------------------------------------------------------------------- 602 (841)
Q Consensus 603 -------------------------------------------------------------------------------- 602 (841)
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~ 257 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTT
T ss_pred ccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhh
Confidence
Q ss_pred ----------------------------------------------ccccccccccccccc-------------------
Q 045150 603 ----------------------------------------------ENLTNLQTLKYVRCK------------------- 617 (841)
Q Consensus 603 ----------------------------------------------~~l~~L~~L~l~~~~------------------- 617 (841)
..+++|+.|++.+|.
T Consensus 258 l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~ 337 (606)
T 3vq2_A 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTM 337 (606)
T ss_dssp GGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEES
T ss_pred hhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccC
Confidence 111122222222221
Q ss_pred --chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccC------------
Q 045150 618 --SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASL------------ 683 (841)
Q Consensus 618 --~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l------------ 683 (841)
......+..+++|+.|++++|.... ..... ..+..+++|+.|++++|.+... |..+..++.+
T Consensus 338 n~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~-~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 338 NKGSISFKKVALPSLSYLDLSRNALSF--SGCCS-YSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp CSSCEECCCCCCTTCCEEECCSSCEEE--EEECC-HHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEES
T ss_pred CcCccchhhccCCCCCEEECcCCccCC--Ccchh-hhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCC
Confidence 1111134466788888888776331 11112 6777888888888888765432 2222211111
Q ss_pred ----CCCCCCcccceeEeccccCC--CCccccccCCCccEEEEEeccCCCC-ChhhhhhcccCCeEEEecccCCCCCccc
Q 045150 684 ----QPLSHCQRLVDLRLTGRMTT--LPKDMHVLLPNLECLSLKVVLPEEN-PMPALEMLSNLTILDLNFYRDSGDPYHE 756 (841)
Q Consensus 684 ----~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 756 (841)
..+..+++|+.|++++|... .|..+..+ ++|+.|+|++|.+.+. .+..++.+++|+.|+|++|.+++...
T Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-- 490 (606)
T 3vq2_A 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-- 490 (606)
T ss_dssp TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT--
T ss_pred ccChhhhhccccCCEEECcCCCCCccchhhhcCC-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh--
Confidence 23556778888888886432 56666665 8899999988887653 56678888999999998887654221
Q ss_pred cceEEcCCCcccccceeccccccCceEE-EEccCccccccccccccccCCC-CCCcc
Q 045150 757 KKLSCRAEGFPLLEILLLDAVEVGIVEW-QVEERAMPMLRGLKIPSDIPNL-NIPER 811 (841)
Q Consensus 757 ~~~~~~~~~f~~L~~L~l~~~~~~l~~~-~~~~~~~p~L~~L~l~~~c~~L-~lp~~ 811 (841)
.....+++|+.|++++|. +..+ +.....+++|++|+++ +| ++ .+|.+
T Consensus 491 ----~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~l~-~N-~l~~~p~~ 539 (606)
T 3vq2_A 491 ----GVFDTLHRLQLLNMSHNN--LLFLDSSHYNQLYSLSTLDCS-FN-RIETSKGI 539 (606)
T ss_dssp ----TTTTTCTTCCEEECCSSC--CSCEEGGGTTTCTTCCEEECT-TS-CCCCEESC
T ss_pred ----hhhcccccCCEEECCCCc--CCCcCHHHccCCCcCCEEECC-CC-cCcccCHh
Confidence 123467888888888886 6665 3345678888888888 65 46 66654
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=4.8e-22 Score=224.81 Aligned_cols=288 Identities=20% Similarity=0.160 Sum_probs=182.7
Q ss_pred CCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcc
Q 045150 481 NSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSS 560 (841)
Q Consensus 481 ~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~ 560 (841)
.++++.|.+.++.... ..+..|.++++|++|+|++|. ++. ..|..|.++++|++|+|++| .+..+|..
T Consensus 31 ~~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~------i~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 98 (477)
T 2id5_A 31 PTETRLLDLGKNRIKT----LNQDEFASFPHLEELELNENI------VSA-VEPGAFNNLFNLRTLGLRSN-RLKLIPLG 98 (477)
T ss_dssp CTTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECTTSC------CCE-ECTTTTTTCTTCCEEECCSS-CCCSCCTT
T ss_pred CCCCcEEECCCCccce----ECHhHccCCCCCCEEECCCCc------cCE-eChhhhhCCccCCEEECCCC-cCCccCcc
Confidence 4577888887776642 334567788888888888887 663 44677888888888888888 67777653
Q ss_pred -cCCCCCCCeeecC-Cccccc-Cccccccccccceec---cc--ccccCCccccccccccccccc--chhccccccccCC
Q 045150 561 -IFNLPGLQTLDLS-RCIVQL-PPETDMMRELRHLIG---KL--IGTLPIENLTNLQTLKYVRCK--SWIRVNTAKLVNL 630 (841)
Q Consensus 561 -i~~L~~L~~L~L~-~~~~~l-p~~~~~L~~L~~L~~---~~--~~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L 630 (841)
+.++++|++|+|+ +.+..+ |..+.++++|++|.. .. ..+..++.+++|+.|++.+|. ...+..+..+++|
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence 6788888888888 666554 456777777877743 11 122336777777777777776 2233346777777
Q ss_pred CceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecccc-CCCCcc-c
Q 045150 631 RELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPKD-M 708 (841)
Q Consensus 631 ~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~~-~ 708 (841)
+.|++.+|.... .....+..+++|+.|++++|...+..+.. .....+|+.|++++|. ..+|.. +
T Consensus 179 ~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---------~~~~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 179 IVLRLRHLNINA-----IRDYSFKRLYRLKVLEISHWPYLDTMTPN---------CLYGLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp CEEEEESCCCCE-----ECTTCSCSCTTCCEEEEECCTTCCEECTT---------TTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred cEEeCCCCcCcE-----eChhhcccCcccceeeCCCCccccccCcc---------cccCccccEEECcCCcccccCHHHh
Confidence 777777765331 11145566777777777776544333221 1122367777777653 335533 3
Q ss_pred cccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEc-
Q 045150 709 HVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVE- 787 (841)
Q Consensus 709 ~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~- 787 (841)
..+ ++|+.|+|++|.++...+..+..+++|+.|+|++|++++... .....+++|+.|++++|. ++.++..
T Consensus 245 ~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~N~--l~~~~~~~ 315 (477)
T 2id5_A 245 RHL-VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP------YAFRGLNYLRVLNVSGNQ--LTTLEESV 315 (477)
T ss_dssp TTC-TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT------TTBTTCTTCCEEECCSSC--CSCCCGGG
T ss_pred cCc-cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH------HHhcCcccCCEEECCCCc--CceeCHhH
Confidence 333 777777777777665555566777777777777765543211 122456777777777775 6665433
Q ss_pred cCccccccccccccccC
Q 045150 788 ERAMPMLRGLKIPSDIP 804 (841)
Q Consensus 788 ~~~~p~L~~L~l~~~c~ 804 (841)
...+++|++|+++ ++|
T Consensus 316 ~~~l~~L~~L~l~-~N~ 331 (477)
T 2id5_A 316 FHSVGNLETLILD-SNP 331 (477)
T ss_dssp BSCGGGCCEEECC-SSC
T ss_pred cCCCcccCEEEcc-CCC
Confidence 2456777777776 543
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=6.9e-22 Score=217.24 Aligned_cols=283 Identities=16% Similarity=0.114 Sum_probs=209.7
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCcccc-C
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDF-P 558 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~l-p 558 (841)
..++++.+.+.++... ..+...|..+++|++|+|++|. ++. ..+..+..+++|++|+|++| .+..+ |
T Consensus 43 ~l~~l~~l~l~~~~l~----~l~~~~~~~l~~L~~L~L~~n~------i~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 110 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQ------IEE-IDTYAFAYAHTIQKLYMGFN-AIRYLPP 110 (390)
T ss_dssp GGCCCSEEEEESCEES----EECTHHHHHCCCCSEEECTTSC------CCE-ECTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred ccCCceEEEecCCchh----hCChhHhcccccCcEEECCCCc------ccc-cChhhccCCCCcCEEECCCC-CCCcCCH
Confidence 6788999999887764 2556778999999999999998 773 34458999999999999999 56665 4
Q ss_pred cccCCCCCCCeeecC-CcccccCccc-cccccccceec---cccc--ccCCcccccccccccccccchhccccccccCCC
Q 045150 559 SSIFNLPGLQTLDLS-RCIVQLPPET-DMMRELRHLIG---KLIG--TLPIENLTNLQTLKYVRCKSWIRVNTAKLVNLR 631 (841)
Q Consensus 559 ~~i~~L~~L~~L~L~-~~~~~lp~~~-~~L~~L~~L~~---~~~~--~~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~ 631 (841)
..++++++|++|+++ +.+..+|..+ .++++|++|.. .... +..++.+++|++|++.++.-... .+..+++|+
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~ 189 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLF 189 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCS
T ss_pred HHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccc
Confidence 568999999999999 7888888874 78999999943 2222 22388899999999988872211 467788899
Q ss_pred ceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCCCCcccccc
Q 045150 632 ELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTTLPKDMHVL 711 (841)
Q Consensus 632 ~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~p~~~~~l 711 (841)
.|++++|... .+...++|+.|++++|.+... + ...+++|+.|++++|...-+.++..+
T Consensus 190 ~L~l~~n~l~----------~~~~~~~L~~L~l~~n~l~~~--------~----~~~~~~L~~L~l~~n~l~~~~~l~~l 247 (390)
T 3o6n_A 190 HANVSYNLLS----------TLAIPIAVEELDASHNSINVV--------R----GPVNVELTILKLQHNNLTDTAWLLNY 247 (390)
T ss_dssp EEECCSSCCS----------EEECCSSCSEEECCSSCCCEE--------E----CCCCSSCCEEECCSSCCCCCGGGGGC
T ss_pred eeeccccccc----------ccCCCCcceEEECCCCeeeec--------c----ccccccccEEECCCCCCcccHHHcCC
Confidence 9998877533 122345788899888854332 1 11245788888888765555567666
Q ss_pred CCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEccCcc
Q 045150 712 LPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAM 791 (841)
Q Consensus 712 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~ 791 (841)
++|+.|+|++|.+.+..+..++.+++|+.|+|++|++++. ......+++|+.|++++|. ++.++.....+
T Consensus 248 -~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~l 317 (390)
T 3o6n_A 248 -PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-------NLYGQPIPTLKVLDLSHNH--LLHVERNQPQF 317 (390)
T ss_dssp -TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-------ECSSSCCTTCCEEECCSSC--CCCCGGGHHHH
T ss_pred -CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-------CcccCCCCCCCEEECCCCc--ceecCcccccc
Confidence 8888888888888776677888888888888888766542 2223467888888888886 77766555678
Q ss_pred ccccccccccccCCC-CCC
Q 045150 792 PMLRGLKIPSDIPNL-NIP 809 (841)
Q Consensus 792 p~L~~L~l~~~c~~L-~lp 809 (841)
++|++|+++ +|+ + .+|
T Consensus 318 ~~L~~L~L~-~N~-i~~~~ 334 (390)
T 3o6n_A 318 DRLENLYLD-HNS-IVTLK 334 (390)
T ss_dssp TTCSEEECC-SSC-CCCCC
T ss_pred CcCCEEECC-CCc-cceeC
Confidence 888888888 654 4 443
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=224.33 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=84.9
Q ss_pred CCCcccceeEeccccCC--CCccccccCCCccEEEEEeccCCC--CChhhhhhcccCCeEEEecccCCC-CCcc------
Q 045150 687 SHCQRLVDLRLTGRMTT--LPKDMHVLLPNLECLSLKVVLPEE--NPMPALEMLSNLTILDLNFYRDSG-DPYH------ 755 (841)
Q Consensus 687 ~~~~~L~~L~L~~~~~~--~p~~~~~l~~~L~~L~L~~~~l~~--~~~~~l~~l~~L~~L~L~~N~l~~-~~~~------ 755 (841)
..+++|++|++++|... .|.++..+ ++|+.|+|++|.+++ ..+..++.+++|+.|+|++|.+++ .+..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 56778899999887433 57777776 899999999998865 334568889999999999887765 2210
Q ss_pred -ccceEEcC--------CCc-ccccceeccccccCceEEEEccCccccccccccccccCCC-CCCcc
Q 045150 756 -EKKLSCRA--------EGF-PLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIPNL-NIPER 811 (841)
Q Consensus 756 -~~~~~~~~--------~~f-~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~~L-~lp~~ 811 (841)
...+.... ..+ ++|+.|++++|. ++.+|.....+++|++|+++ +| ++ .+|..
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~--l~~ip~~~~~l~~L~~L~L~-~N-~l~~l~~~ 462 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK--IKSIPKQVVKLEALQELNVA-SN-QLKSVPDG 462 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSC--CCCCCGGGGGCTTCCEEECC-SS-CCCCCCTT
T ss_pred cCCEEECcCCCCCcchhhhhcccCCEEECCCCc--ccccchhhhcCCCCCEEECC-CC-cCCccCHH
Confidence 01111111 122 588888888886 77777666688999999999 66 67 77765
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=6.9e-22 Score=229.42 Aligned_cols=279 Identities=17% Similarity=0.115 Sum_probs=200.9
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccC-
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFP- 558 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp- 558 (841)
.+++++.+.+.++... ..++.+|..+++|++|+|++|. +.+ ..|..|+.+++|++|+|++| .+..+|
T Consensus 49 ~l~~l~~l~l~~~~l~----~lp~~~~~~l~~L~~L~L~~n~------l~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 116 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQ------IEE-IDTYAFAYAHTIQKLYMGFN-AIRYLPP 116 (597)
T ss_dssp GGCCCSEEEESSCEES----EECTHHHHHCCCCSEEECTTSC------CCE-ECTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred cCCCceEEEeeCCCCC----CcCHHHHccCCCCcEEECCCCC------CCC-CChHHhcCCCCCCEEECCCC-cCCCCCH
Confidence 5678899988887663 3566778999999999999999 773 44568999999999999999 566665
Q ss_pred cccCCCCCCCeeecC-CcccccCcc-ccccccccceec---cccc--ccCCcccccccccccccccchhccccccccCCC
Q 045150 559 SSIFNLPGLQTLDLS-RCIVQLPPE-TDMMRELRHLIG---KLIG--TLPIENLTNLQTLKYVRCKSWIRVNTAKLVNLR 631 (841)
Q Consensus 559 ~~i~~L~~L~~L~L~-~~~~~lp~~-~~~L~~L~~L~~---~~~~--~~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~ 631 (841)
..++++++|++|+|+ |.+..+|.. +.++++|++|.. .... +..++.+++|++|++++|.-.. ..++.+++|+
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~ 195 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLF 195 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCS
T ss_pred HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhh
Confidence 457899999999999 788888886 488999999943 2222 2238889999999999887221 1467788899
Q ss_pred ceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCCCCcccccc
Q 045150 632 ELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTTLPKDMHVL 711 (841)
Q Consensus 632 ~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~p~~~~~l 711 (841)
.|++++|... .+....+|+.|++++|.+....+ ..+++|+.|++++|...-+.++..+
T Consensus 196 ~L~l~~n~l~----------~l~~~~~L~~L~ls~n~l~~~~~------------~~~~~L~~L~L~~n~l~~~~~l~~l 253 (597)
T 3oja_B 196 HANVSYNLLS----------TLAIPIAVEELDASHNSINVVRG------------PVNVELTILKLQHNNLTDTAWLLNY 253 (597)
T ss_dssp EEECCSSCCS----------EEECCTTCSEEECCSSCCCEEEC------------SCCSCCCEEECCSSCCCCCGGGGGC
T ss_pred hhhcccCccc----------cccCCchhheeeccCCccccccc------------ccCCCCCEEECCCCCCCCChhhccC
Confidence 9998877533 12234578888888885432111 1124678888887765555666665
Q ss_pred CCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEccCcc
Q 045150 712 LPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAM 791 (841)
Q Consensus 712 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~ 791 (841)
++|+.|+|++|.+.+..+..++.+++|+.|+|++|.+++. ......+|+|+.|++++|. +..+|.....+
T Consensus 254 -~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-------~~~~~~l~~L~~L~Ls~N~--l~~i~~~~~~l 323 (597)
T 3oja_B 254 -PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-------NLYGQPIPTLKVLDLSHNH--LLHVERNQPQF 323 (597)
T ss_dssp -TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-------ECSSSCCTTCCEEECCSSC--CCCCGGGHHHH
T ss_pred -CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-------CcccccCCCCcEEECCCCC--CCccCcccccC
Confidence 7888888888877766667777888888888877766542 2223457777777777776 66665555567
Q ss_pred ccccccccccccC
Q 045150 792 PMLRGLKIPSDIP 804 (841)
Q Consensus 792 p~L~~L~l~~~c~ 804 (841)
++|+.|+++ +|+
T Consensus 324 ~~L~~L~L~-~N~ 335 (597)
T 3oja_B 324 DRLENLYLD-HNS 335 (597)
T ss_dssp TTCSEEECC-SSC
T ss_pred CCCCEEECC-CCC
Confidence 777777777 553
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=3.9e-21 Score=216.34 Aligned_cols=294 Identities=18% Similarity=0.187 Sum_probs=186.6
Q ss_pred ccceEeeeeecCCCeeeeccCCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccc
Q 045150 460 SSCRRQAIYSETPSFFWLHHSNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGK 539 (841)
Q Consensus 460 ~~~r~l~i~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~ 539 (841)
..++.+.+..+....++.-..+++|+.|.+.++.... ... +..+++|++|++++|. ++ .++. +.+
T Consensus 68 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~-----~~~-~~~l~~L~~L~L~~n~------l~--~~~~-~~~ 132 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD-----ITP-LANLTNLTGLTLFNNQ------IT--DIDP-LKN 132 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSC------CC--CCGG-GTT
T ss_pred cCCCEEECCCCccCCchhhhccccCCEEECCCCcccc-----Chh-hcCCCCCCEEECCCCC------CC--CChH-HcC
Confidence 4566777665554444332266777777777665532 122 6677777777777776 65 4443 667
Q ss_pred cCcceeeecCCCcCccccCc--------------------ccCCCCCCCeeecC-CcccccCccccccccccceec---c
Q 045150 540 LIHLKYLGIRGTTFIRDFPS--------------------SIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIG---K 595 (841)
Q Consensus 540 L~~L~~L~L~~~~~~~~lp~--------------------~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~---~ 595 (841)
+++|++|++++| .+..+|. .+.++++|++|+++ |.+..++ .+.++++|++|.. .
T Consensus 133 l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 133 LTNLNRLELSSN-TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQ 210 (466)
T ss_dssp CTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC
T ss_pred CCCCCEEECCCC-ccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCc
Confidence 777777777776 4554442 14445555555555 3333332 3455555555522 2
Q ss_pred cccccCCcccccccccccccccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCC
Q 045150 596 LIGTLPIENLTNLQTLKYVRCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQ 675 (841)
Q Consensus 596 ~~~~~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 675 (841)
.....+++.+++|++|++.+|.-.....+..+++|+.|++++|.... . ..+..+++|+.|++++|.+.+
T Consensus 211 l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-----~--~~~~~l~~L~~L~l~~n~l~~---- 279 (466)
T 1o6v_A 211 ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-----L--APLSGLTKLTELKLGANQISN---- 279 (466)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-----C--GGGTTCTTCSEEECCSSCCCC----
T ss_pred ccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc-----c--hhhhcCCCCCEEECCCCccCc----
Confidence 22222355556666666665552223445566666666666654321 1 125556666666666664332
Q ss_pred CCcccccCCCCCCCcccceeEeccccCC-CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCc
Q 045150 676 SSNAFASLQPLSHCQRLVDLRLTGRMTT-LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPY 754 (841)
Q Consensus 676 ~~~~~~~l~~l~~~~~L~~L~L~~~~~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 754 (841)
+..+..+++|+.|++++|... ++. +..+ ++|+.|+|++|.+++..+ ++.+++|+.|++++|.+++..
T Consensus 280 -------~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~- 347 (466)
T 1o6v_A 280 -------ISPLAGLTALTNLELNENQLEDISP-ISNL-KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS- 347 (466)
T ss_dssp -------CGGGTTCTTCSEEECCSSCCSCCGG-GGGC-TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG-
T ss_pred -------cccccCCCccCeEEcCCCcccCchh-hcCC-CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch-
Confidence 122567889999999997544 443 5665 999999999999876543 889999999999999877642
Q ss_pred cccceEEcCCCcccccceeccccccCceEEEEccCccccccccccccccC
Q 045150 755 HEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIP 804 (841)
Q Consensus 755 ~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~ 804 (841)
....+++|+.|++++|. +.+++. ...+++|+.|+++ +|+
T Consensus 348 -------~l~~l~~L~~L~l~~n~--l~~~~~-~~~l~~L~~L~l~-~n~ 386 (466)
T 1o6v_A 348 -------SLANLTNINWLSAGHNQ--ISDLTP-LANLTRITQLGLN-DQA 386 (466)
T ss_dssp -------GGTTCTTCCEEECCSSC--CCBCGG-GTTCTTCCEEECC-CEE
T ss_pred -------hhccCCCCCEEeCCCCc--cCccch-hhcCCCCCEEecc-CCc
Confidence 24578999999999997 777644 6789999999999 774
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=7.3e-21 Score=205.60 Aligned_cols=276 Identities=15% Similarity=0.143 Sum_probs=217.4
Q ss_pred CccceEeeeeecCCCeeeeccCCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhcc
Q 045150 459 QSSCRRQAIYSETPSFFWLHHSNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLG 538 (841)
Q Consensus 459 ~~~~r~l~i~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~ 538 (841)
...++.+.+..+....++.-..+++|+.|.+.++.... + +.+..+++|++|++++|. +. .++. +.
T Consensus 65 ~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-----~-~~~~~l~~L~~L~l~~n~------i~--~~~~-~~ 129 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-----I-SALQNLTNLRELYLNEDN------IS--DISP-LA 129 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-----C-GGGTTCTTCSEEECTTSC------CC--CCGG-GT
T ss_pred cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-----c-hHHcCCCcCCEEECcCCc------cc--Cchh-hc
Confidence 45688888886666655432388999999999887642 2 358999999999999999 87 5665 89
Q ss_pred ccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceec---ccccccCCcccccccccccc
Q 045150 539 KLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIG---KLIGTLPIENLTNLQTLKYV 614 (841)
Q Consensus 539 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~---~~~~~~~i~~l~~L~~L~l~ 614 (841)
.+++|++|++++|..+..++ .+..+++|++|+++ |.+..++. +..+++|++|.. ......++..+++|+.|++.
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY 207 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred cCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecc
Confidence 99999999999995555554 49999999999999 77666665 889999999943 33333348889999999999
Q ss_pred cccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccce
Q 045150 615 RCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVD 694 (841)
Q Consensus 615 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~ 694 (841)
++.-.....+..+++|++|++++|... .. ..+..+++|+.|++++|.+.. +..+..+++|+.
T Consensus 208 ~n~l~~~~~~~~~~~L~~L~l~~n~l~-----~~--~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~l~~L~~ 269 (347)
T 4fmz_A 208 VNQITDITPVANMTRLNSLKIGNNKIT-----DL--SPLANLSQLTWLEIGTNQISD-----------INAVKDLTKLKM 269 (347)
T ss_dssp SSCCCCCGGGGGCTTCCEEECCSSCCC-----CC--GGGTTCTTCCEEECCSSCCCC-----------CGGGTTCTTCCE
T ss_pred cCCCCCCchhhcCCcCCEEEccCCccC-----CC--cchhcCCCCCEEECCCCccCC-----------ChhHhcCCCcCE
Confidence 988333334889999999999998744 22 237889999999999985432 234667889999
Q ss_pred eEeccccCCCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceec
Q 045150 695 LRLTGRMTTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLL 774 (841)
Q Consensus 695 L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l 774 (841)
|++++|...-...+..+ ++|+.|+|++|.+++..+..++.+++|+.|+|++|.+++... ...+++|++|++
T Consensus 270 L~l~~n~l~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~l 340 (347)
T 4fmz_A 270 LNVGSNQISDISVLNNL-SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--------LASLSKMDSADF 340 (347)
T ss_dssp EECCSSCCCCCGGGGGC-TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--------GGGCTTCSEESS
T ss_pred EEccCCccCCChhhcCC-CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--------hhhhhccceeeh
Confidence 99999754433456665 999999999999988888889999999999999998776432 346899999999
Q ss_pred cccc
Q 045150 775 DAVE 778 (841)
Q Consensus 775 ~~~~ 778 (841)
++|+
T Consensus 341 ~~N~ 344 (347)
T 4fmz_A 341 ANQV 344 (347)
T ss_dssp SCC-
T ss_pred hhhc
Confidence 9997
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=2e-21 Score=213.64 Aligned_cols=297 Identities=15% Similarity=0.061 Sum_probs=218.8
Q ss_pred ccceEeeeeecCCCeeeecc--CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhc
Q 045150 460 SSCRRQAIYSETPSFFWLHH--SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKL 537 (841)
Q Consensus 460 ~~~r~l~i~~~~~~~~~~~~--~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i 537 (841)
..++.+.+..+....++... .+++++.|.+.++.... ..+..|..+++|++|+|++|. +.. ..|..+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~------l~~-~~~~~~ 113 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNA------IRY-LPPHVF 113 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSC------CCC-CCTTTT
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc----cChhhccCCCCcCEEECCCCC------CCc-CCHHHh
Confidence 56788888865556665433 68999999999887642 445578999999999999999 773 445678
Q ss_pred cccCcceeeecCCCcCccccCcc-cCCCCCCCeeecC-CcccccCc-cccccccccceec--ccccccCCcccccccccc
Q 045150 538 GKLIHLKYLGIRGTTFIRDFPSS-IFNLPGLQTLDLS-RCIVQLPP-ETDMMRELRHLIG--KLIGTLPIENLTNLQTLK 612 (841)
Q Consensus 538 ~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~-~~~~~lp~-~~~~L~~L~~L~~--~~~~~~~i~~l~~L~~L~ 612 (841)
+++++|++|+|++| .+..+|.. +.++++|++|+++ +.+..++. .+.++++|++|.. +.....+++.+++|+.|+
T Consensus 114 ~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~ 192 (390)
T 3o6n_A 114 QNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN 192 (390)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEE
T ss_pred cCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceee
Confidence 99999999999999 78888877 4899999999999 77777654 5889999999954 223334578889999999
Q ss_pred cccccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCccc
Q 045150 613 YVRCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRL 692 (841)
Q Consensus 613 l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L 692 (841)
+.++. ...+...++|+.|++++|... ..+ . ...++|+.|++++|.+.+ ...+..+++|
T Consensus 193 l~~n~---l~~~~~~~~L~~L~l~~n~l~---~~~---~--~~~~~L~~L~l~~n~l~~-----------~~~l~~l~~L 250 (390)
T 3o6n_A 193 VSYNL---LSTLAIPIAVEELDASHNSIN---VVR---G--PVNVELTILKLQHNNLTD-----------TAWLLNYPGL 250 (390)
T ss_dssp CCSSC---CSEEECCSSCSEEECCSSCCC---EEE---C--CCCSSCCEEECCSSCCCC-----------CGGGGGCTTC
T ss_pred ccccc---ccccCCCCcceEEECCCCeee---ecc---c--cccccccEEECCCCCCcc-----------cHHHcCCCCc
Confidence 88775 222344567888888887643 111 1 124688888888885442 1235667788
Q ss_pred ceeEeccccCC--CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCccccc
Q 045150 693 VDLRLTGRMTT--LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLE 770 (841)
Q Consensus 693 ~~L~L~~~~~~--~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~ 770 (841)
+.|++++|... .|..+..+ ++|+.|+|++|.++. .+..+..+++|+.|+|++|.+++.+. ....+++|+
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~~l~~L~ 321 (390)
T 3o6n_A 251 VEVDLSYNELEKIMYHPFVKM-QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVER-------NQPQFDRLE 321 (390)
T ss_dssp SEEECCSSCCCEEESGGGTTC-SSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGG-------GHHHHTTCS
T ss_pred cEEECCCCcCCCcChhHcccc-ccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCc-------cccccCcCC
Confidence 88888887433 46666666 888999998888764 34455678889999998887664321 123578888
Q ss_pred ceeccccccCceEEEEccCccccccccccccccC
Q 045150 771 ILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIP 804 (841)
Q Consensus 771 ~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~ 804 (841)
.|++++|. ++.++ ...+++|++|+++ +++
T Consensus 322 ~L~L~~N~--i~~~~--~~~~~~L~~L~l~-~N~ 350 (390)
T 3o6n_A 322 NLYLDHNS--IVTLK--LSTHHTLKNLTLS-HND 350 (390)
T ss_dssp EEECCSSC--CCCCC--CCTTCCCSEEECC-SSC
T ss_pred EEECCCCc--cceeC--chhhccCCEEEcC-CCC
Confidence 89988887 77664 5678888888888 664
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=3.1e-21 Score=216.92 Aligned_cols=319 Identities=16% Similarity=0.103 Sum_probs=203.2
Q ss_pred ccceEeeeeecCCC-eeeecc--CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhh
Q 045150 460 SSCRRQAIYSETPS-FFWLHH--SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKK 536 (841)
Q Consensus 460 ~~~r~l~i~~~~~~-~~~~~~--~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~ 536 (841)
..++.+.+..+... .++... .+++|+.|.+.++.... ..+..|.++++|++|+|++|. +++ ..|..
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~------l~~-~~~~~ 122 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ----LETGAFNGLANLEVLTLTQCN------LDG-AVLSG 122 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE----ECTTTTTTCTTCCEEECTTSC------CBT-HHHHS
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCc----cChhhccCcccCCEEeCCCCC------CCc-cccCc
Confidence 45666666644333 222222 56777777777765532 334566777777777777777 652 23433
Q ss_pred --ccccCcceeeecCCCcCcccc-Ccc-cCCCCCCCeeecC-Cccccc-Ccccccc--ccccceeccc---cccc-----
Q 045150 537 --LGKLIHLKYLGIRGTTFIRDF-PSS-IFNLPGLQTLDLS-RCIVQL-PPETDMM--RELRHLIGKL---IGTL----- 600 (841)
Q Consensus 537 --i~~L~~L~~L~L~~~~~~~~l-p~~-i~~L~~L~~L~L~-~~~~~l-p~~~~~L--~~L~~L~~~~---~~~~----- 600 (841)
+..+++|++|+|++| .+..+ |.. +.++++|++|+++ +.+..+ |..+..+ .+|+.|.... ....
T Consensus 123 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~ 201 (455)
T 3v47_A 123 NFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201 (455)
T ss_dssp STTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT
T ss_pred ccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcc
Confidence 677777777777777 44444 444 6777777777777 555543 3445444 4555553211 1100
Q ss_pred -----CCccccccccccccccc--chhccccccc---cCCCceEEeccCCCCcCc-----ccccHHHHh--ccCCcceEE
Q 045150 601 -----PIENLTNLQTLKYVRCK--SWIRVNTAKL---VNLRELHIVGGDGQSMGE-----MEFSFESIA--KLKNLQFLS 663 (841)
Q Consensus 601 -----~i~~l~~L~~L~l~~~~--~~~~~~l~~l---~~L~~L~l~~~~~~~~g~-----~~~~~~~l~--~l~~L~~L~ 663 (841)
.+..+++|++|++++|. ...+..+..+ ++|+.|.++++....... .......+. ..++|+.|+
T Consensus 202 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (455)
T 3v47_A 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281 (455)
T ss_dssp HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEE
T ss_pred ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEE
Confidence 12345677777777775 3333333333 667777776653221000 000001122 236899999
Q ss_pred eeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC--CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCe
Q 045150 664 VNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT--LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTI 741 (841)
Q Consensus 664 l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~ 741 (841)
+++|.+.+..|. .+..+++|+.|++++|... .|..+..+ ++|+.|+|++|.+.+..+..++.+++|+.
T Consensus 282 l~~n~l~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 282 LSKSKIFALLKS---------VFSHFTDLEQLTLAQNEINKIDDNAFWGL-THLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp CCSSCCCEECTT---------TTTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred ecCccccccchh---------hcccCCCCCEEECCCCcccccChhHhcCc-ccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 999976654333 2556789999999997543 45567676 99999999999998777888999999999
Q ss_pred EEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEc-cCccccccccccccccCCC-CCC
Q 045150 742 LDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVE-ERAMPMLRGLKIPSDIPNL-NIP 809 (841)
Q Consensus 742 L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~-~~~~p~L~~L~l~~~c~~L-~lp 809 (841)
|+|++|.+++... .....+++|++|++++|. ++.++.. ...+++|++|+++ +|+-- ..|
T Consensus 352 L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~ 412 (455)
T 3v47_A 352 LDLSYNHIRALGD------QSFLGLPNLKELALDTNQ--LKSVPDGIFDRLTSLQKIWLH-TNPWDCSCP 412 (455)
T ss_dssp EECCSSCCCEECT------TTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECC-SSCBCCCTT
T ss_pred EECCCCcccccCh------hhccccccccEEECCCCc--cccCCHhHhccCCcccEEEcc-CCCcccCCC
Confidence 9999987754321 123568999999999997 8887654 3678999999999 76543 444
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=213.51 Aligned_cols=268 Identities=19% Similarity=0.194 Sum_probs=213.0
Q ss_pred ceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCcccc-CcccCCCCCCCeeecC-CcccccCcc-cccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDF-PSSIFNLPGLQTLDLS-RCIVQLPPE-TDMM 586 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~-~~~~~lp~~-~~~L 586 (841)
+.|++|+|++|. ++. ..|..|.++++|++|+|++| .+..+ |..+.++++|++|+|+ +.+..+|.. +.++
T Consensus 32 ~~l~~L~L~~n~------l~~-~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 32 TETRLLDLGKNR------IKT-LNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp TTCSEEECCSSC------CCE-ECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCcEEECCCCc------cce-ECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 579999999999 873 44678999999999999999 56555 7889999999999999 788888875 6899
Q ss_pred ccccceec---ccc--cccCCccccccccccccccc--chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCc
Q 045150 587 RELRHLIG---KLI--GTLPIENLTNLQTLKYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNL 659 (841)
Q Consensus 587 ~~L~~L~~---~~~--~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L 659 (841)
++|++|.. ... .+..+..+++|+.|++.++. ...+..+..+++|+.|++++|... .+....+.++++|
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L 178 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-----SIPTEALSHLHGL 178 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-----SCCHHHHTTCTTC
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-----ccChhHhcccCCC
Confidence 99999954 222 23348899999999999987 445667899999999999998744 2333678899999
Q ss_pred ceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecccc--CCCCccccccCCCccEEEEEeccCCCCChhhhhhcc
Q 045150 660 QFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM--TTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLS 737 (841)
Q Consensus 660 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~ 737 (841)
+.|++++|.+....+ ..+..+++|+.|+++++. ..+|...... .+|+.|+|++|.++..+...+..++
T Consensus 179 ~~L~l~~n~i~~~~~---------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 179 IVLRLRHLNINAIRD---------YSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp CEEEEESCCCCEECT---------TCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred cEEeCCCCcCcEeCh---------hhcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcccccCHHHhcCcc
Confidence 999999996554322 235677899999999853 3466666665 7999999999999877777899999
Q ss_pred cCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEE-EccCccccccccccccccCCC-CCCc
Q 045150 738 NLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQ-VEERAMPMLRGLKIPSDIPNL-NIPE 810 (841)
Q Consensus 738 ~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~-~~~~~~p~L~~L~l~~~c~~L-~lp~ 810 (841)
+|+.|+|++|.+++... .....+++|+.|++++|. +..+. .....+++|+.|+++ +| ++ .+|.
T Consensus 249 ~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~-~N-~l~~~~~ 313 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEG------SMLHELLRLQEIQLVGGQ--LAVVEPYAFRGLNYLRVLNVS-GN-QLTTLEE 313 (477)
T ss_dssp TCCEEECCSSCCCEECT------TSCTTCTTCCEEECCSSC--CSEECTTTBTTCTTCCEEECC-SS-CCSCCCG
T ss_pred ccCeeECCCCcCCccCh------hhccccccCCEEECCCCc--cceECHHHhcCcccCCEEECC-CC-cCceeCH
Confidence 99999999987654321 123568999999999997 88773 345678999999999 66 66 6664
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=1.6e-20 Score=216.43 Aligned_cols=328 Identities=15% Similarity=0.141 Sum_probs=196.7
Q ss_pred cCccceEeeeeecCCCeeeecc--CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchh
Q 045150 458 VQSSCRRQAIYSETPSFFWLHH--SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNK 535 (841)
Q Consensus 458 ~~~~~r~l~i~~~~~~~~~~~~--~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~ 535 (841)
.+..++++.+..+....+.... .+++|+.|.+.++.... ..+..|.++++|++|+|++|. +.+ ..|.
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~------l~~-~~~~ 92 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNH------LSS-LSSS 92 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSC------CCS-CCHH
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCc------cCc-cCHH
Confidence 3457888888866666664333 78899999998887642 445678899999999999998 773 4445
Q ss_pred hccccCcceeeecCCCcCcc--ccCcccCCCCCCCeeecC-Cc-ccccC-ccccccccccceec---ccc--cccCCccc
Q 045150 536 KLGKLIHLKYLGIRGTTFIR--DFPSSIFNLPGLQTLDLS-RC-IVQLP-PETDMMRELRHLIG---KLI--GTLPIENL 605 (841)
Q Consensus 536 ~i~~L~~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~L~-~~-~~~lp-~~~~~L~~L~~L~~---~~~--~~~~i~~l 605 (841)
.++++++|++|+|++| .+. ..|..++++++|++|+++ +. ...+| ..+.++++|++|.. ... .+..++.+
T Consensus 93 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 5899999999999999 565 356778999999999999 65 55666 47888899998843 222 23336666
Q ss_pred cccccccccccc-chhccc-cccccCCCceEEeccCCCCcC---------------------------------------
Q 045150 606 TNLQTLKYVRCK-SWIRVN-TAKLVNLRELHIVGGDGQSMG--------------------------------------- 644 (841)
Q Consensus 606 ~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~~~g--------------------------------------- 644 (841)
++|++|++..+. ...+.. +..+++|+.|++++|......
T Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 251 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251 (549)
T ss_dssp SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCT
T ss_pred ccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhc
Confidence 666666555444 111111 122344444444443321100
Q ss_pred ----------------------------------------------------------------------cccccHHHHh
Q 045150 645 ----------------------------------------------------------------------EMEFSFESIA 654 (841)
Q Consensus 645 ----------------------------------------------------------------------~~~~~~~~l~ 654 (841)
...++...+.
T Consensus 252 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~ 331 (549)
T 2z81_A 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331 (549)
T ss_dssp TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHH
T ss_pred cccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHh
Confidence 0001101113
Q ss_pred ccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC-CC---ccccccCCCccEEEEEeccCCCCCh
Q 045150 655 KLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT-LP---KDMHVLLPNLECLSLKVVLPEENPM 730 (841)
Q Consensus 655 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~-~p---~~~~~l~~~L~~L~L~~~~l~~~~~ 730 (841)
.+++|+.|++++|.+.+..|.. ...+..+++|+.|++++|..+ +| ..+..+ ++|+.|+|++|.++ ..+
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~lp 403 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKN------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTFH-PMP 403 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHH------HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCCC-CCC
T ss_pred cCccccEEEccCCccccccccc------hhhhhccccCcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCCc-cCC
Confidence 4555555555555443321100 011334556666666665322 22 123343 77777777777665 344
Q ss_pred hhhhhcccCCeEEEecccCCCCCcc----ccceE-------EcCCCcccccceeccccccCceEEEEccCcccccccccc
Q 045150 731 PALEMLSNLTILDLNFYRDSGDPYH----EKKLS-------CRAEGFPLLEILLLDAVEVGIVEWQVEERAMPMLRGLKI 799 (841)
Q Consensus 731 ~~l~~l~~L~~L~L~~N~l~~~~~~----~~~~~-------~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l 799 (841)
..++.+++|++|++++|.++..+.. .+.+. .....+++|++|++++|. ++.+|. ...+++|++|++
T Consensus 404 ~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~--l~~ip~-~~~l~~L~~L~L 480 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK--LKTLPD-ASLFPVLLVMKI 480 (549)
T ss_dssp SCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC--CSSCCC-GGGCTTCCEEEC
T ss_pred hhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc--cCcCCC-cccCccCCEEec
Confidence 4566666777777776665432210 00000 012368899999999986 877764 456899999999
Q ss_pred ccccCCC-CCCc
Q 045150 800 PSDIPNL-NIPE 810 (841)
Q Consensus 800 ~~~c~~L-~lp~ 810 (841)
+ +| ++ .+|.
T Consensus 481 s-~N-~l~~~~~ 490 (549)
T 2z81_A 481 S-RN-QLKSVPD 490 (549)
T ss_dssp C-SS-CCCCCCT
T ss_pred C-CC-ccCCcCH
Confidence 9 65 66 5544
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=6.7e-21 Score=219.91 Aligned_cols=327 Identities=15% Similarity=0.103 Sum_probs=194.2
Q ss_pred eEeeeeecCCCeeeeccCCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCc
Q 045150 463 RRQAIYSETPSFFWLHHSNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIH 542 (841)
Q Consensus 463 r~l~i~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~ 542 (841)
+.+.+..+....++. .-.++++.|.+.++.... ..+..|.++++|++|+|++|. +++ ..|..|+++++
T Consensus 34 ~~l~ls~~~L~~ip~-~~~~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~------l~~-~~~~~~~~l~~ 101 (562)
T 3a79_B 34 SMVDYSNRNLTHVPK-DLPPRTKALSLSQNSISE----LRMPDISFLSELRVLRLSHNR------IRS-LDFHVFLFNQD 101 (562)
T ss_dssp CEEECTTSCCCSCCT-TSCTTCCEEECCSSCCCC----CCGGGTTTCTTCCEEECCSCC------CCE-ECTTTTTTCTT
T ss_pred cEEEcCCCCCccCCC-CCCCCcCEEECCCCCccc----cChhhhccCCCccEEECCCCC------CCc-CCHHHhCCCCC
Confidence 444444344444432 123677777777776532 444567778888888888887 663 34666777888
Q ss_pred ceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccC--ccccccccccceec--ccccccCCcccccc--ccccccc
Q 045150 543 LKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLP--PETDMMRELRHLIG--KLIGTLPIENLTNL--QTLKYVR 615 (841)
Q Consensus 543 L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp--~~~~~L~~L~~L~~--~~~~~~~i~~l~~L--~~L~l~~ 615 (841)
|++|+|++| .+..+|.. .+++|++|+++ |.+..+| ..+.++++|++|.. +......+..+++| ++|++.+
T Consensus 102 L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 102 LEYLDVSHN-RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL 178 (562)
T ss_dssp CCEEECTTS-CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEE
T ss_pred CCEEECCCC-cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeec
Confidence 888888887 66777766 77888888888 6665543 57777888887743 11122335555555 6666665
Q ss_pred ccc----hhcccc--------------------------ccccCCCceEEeccC--------------------------
Q 045150 616 CKS----WIRVNT--------------------------AKLVNLRELHIVGGD-------------------------- 639 (841)
Q Consensus 616 ~~~----~~~~~l--------------------------~~l~~L~~L~l~~~~-------------------------- 639 (841)
+.- ..+..+ ..+++|+.|++.+|.
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 531 111111 233444555554432
Q ss_pred --CCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCC-----ccccc------------------------------
Q 045150 640 --GQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSS-----NAFAS------------------------------ 682 (841)
Q Consensus 640 --~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~------------------------------ 682 (841)
......... ......++|+.|++++|.+.+..|... ..+..
T Consensus 259 ~~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 259 IETTWKCSVKL--FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEECHHHHHHH--HHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred CcCcHHHHHHH--HHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 000000000 011112367777777776665555433 11100
Q ss_pred ---------CCCCCCCcccceeEeccccCC--CCccccccCCCccEEEEEeccCCCCC--hhhhhhcccCCeEEEecccC
Q 045150 683 ---------LQPLSHCQRLVDLRLTGRMTT--LPKDMHVLLPNLECLSLKVVLPEENP--MPALEMLSNLTILDLNFYRD 749 (841)
Q Consensus 683 ---------l~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~~L~~L~L~~~~l~~~~--~~~l~~l~~L~~L~L~~N~l 749 (841)
......+++|++|++++|... .|.++..+ ++|+.|+|++|.+++.. +..++.+++|+.|++++|.+
T Consensus 337 ~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL-KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp EEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSC-SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred EccCCCcccccCccCCCCceEEECCCCccccchhhhhccc-CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC
Confidence 000156678888888887433 56677666 88888888888876533 34577888888888888877
Q ss_pred CC-CCcc-------ccceEEc--------CCCc-ccccceeccccccCceEEEEccCccccccccccccccCCC-CCCcc
Q 045150 750 SG-DPYH-------EKKLSCR--------AEGF-PLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIPNL-NIPER 811 (841)
Q Consensus 750 ~~-~~~~-------~~~~~~~--------~~~f-~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~~L-~lp~~ 811 (841)
++ .+.. ...+... ...+ ++|+.|++++|. ++.+|.....+++|++|+++ +| ++ .+|..
T Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~--l~~ip~~~~~l~~L~~L~L~-~N-~l~~l~~~ 491 (562)
T 3a79_B 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR--IMSIPKDVTHLQALQELNVA-SN-QLKSVPDG 491 (562)
T ss_dssp BSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSC--CCCCCTTTTSSCCCSEEECC-SS-CCCCCCTT
T ss_pred CCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCc--CcccChhhcCCCCCCEEECC-CC-CCCCCCHH
Confidence 65 2210 0011111 1223 588999999886 88887766788999999999 54 67 88875
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=226.71 Aligned_cols=100 Identities=17% Similarity=0.067 Sum_probs=46.4
Q ss_pred CCcccceeEeccccCC--CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCC
Q 045150 688 HCQRLVDLRLTGRMTT--LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEG 765 (841)
Q Consensus 688 ~~~~L~~L~L~~~~~~--~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~ 765 (841)
.+++|+.|+|++|... .|..+..+ ++|+.|+|++|.+....+..++.+++|+.|+|++|.+.+... .....
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~------~~~~~ 360 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD------QTFKF 360 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTTTTTC-SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS------SCSCS
T ss_pred cCCCCCEEECCCCcCCCCChHHhcCC-CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh------hhhcC
Confidence 3444555555544221 22233333 555555555555544444445555555555555544432211 01234
Q ss_pred cccccceeccccccCceEEEEccCccccccccccc
Q 045150 766 FPLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIP 800 (841)
Q Consensus 766 f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~ 800 (841)
+++|+.|++++|. ++.+ ..+|+|+.|.++
T Consensus 361 l~~L~~L~Ls~N~--l~~i----~~~~~L~~L~l~ 389 (844)
T 3j0a_A 361 LEKLQTLDLRDNA--LTTI----HFIPSIPDIFLS 389 (844)
T ss_dssp CCCCCEEEEETCC--SCCC----SSCCSCSEEEEE
T ss_pred CCCCCEEECCCCC--CCcc----cCCCCcchhccC
Confidence 5566666666554 4432 225555555555
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=1.2e-20 Score=220.30 Aligned_cols=245 Identities=18% Similarity=0.211 Sum_probs=105.8
Q ss_pred cceeeecCCCcCccccCc-ccCCCCCCCeeecC-CcccccCccccccccccceec---ccc--cccCCcccccccccccc
Q 045150 542 HLKYLGIRGTTFIRDFPS-SIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIG---KLI--GTLPIENLTNLQTLKYV 614 (841)
Q Consensus 542 ~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~---~~~--~~~~i~~l~~L~~L~l~ 614 (841)
.|++|++++| .+..+|. .++++++|++|+++ +.+..+|..+..+++|++|.. ... .+..++.+++|++|++.
T Consensus 255 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecC-ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 3444444444 3333322 24455555555555 444455555555555555522 111 11224445555555555
Q ss_pred ccc--chhc-cccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccc----------
Q 045150 615 RCK--SWIR-VNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFA---------- 681 (841)
Q Consensus 615 ~~~--~~~~-~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---------- 681 (841)
++. ...+ ..+..+++|+.|++++|..... .... ..+..+++|+.|++++|.+.+..|..+..++
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETS--DCCN-LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE--EEST-TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccc--cCcc-hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 443 1111 2244455555555544432210 0001 3344445555555554433322211111000
Q ss_pred ------cCCCCCCCcccceeEeccccCC--CCccccccCCCccEEEEEeccCCCC---ChhhhhhcccCCeEEEecccCC
Q 045150 682 ------SLQPLSHCQRLVDLRLTGRMTT--LPKDMHVLLPNLECLSLKVVLPEEN---PMPALEMLSNLTILDLNFYRDS 750 (841)
Q Consensus 682 ------~l~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~~L~~L~L~~~~l~~~---~~~~l~~l~~L~~L~L~~N~l~ 750 (841)
....+..+++|+.|++++|... .|..+..+ ++|+.|+|++|.+.+. .+..++.+++|+.|+|++|.++
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL-PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC-TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC-CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence 0011334455666666554322 33334443 5666666666655431 1134555666666666555443
Q ss_pred CCCccccceEEcCCCcccccceeccccccCceEEE-EccCccccccccccc
Q 045150 751 GDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQ-VEERAMPMLRGLKIP 800 (841)
Q Consensus 751 ~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~-~~~~~~p~L~~L~l~ 800 (841)
+.. ......+++|+.|++++|. ++... .....+++| .|+++
T Consensus 490 ~~~------~~~~~~l~~L~~L~Ls~N~--l~~~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 490 SID------QHAFTSLKMMNHVDLSHNR--LTSSSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp EEC------TTTTTTCTTCCEEECCSSC--CCGGGGGGGTTCCSC-EEECC
T ss_pred ccC------hhhhccccCCCEEECCCCc--cCcCChhHhCccccc-EEECc
Confidence 221 0112345666666666665 44331 223345555 66666
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=3.8e-21 Score=221.74 Aligned_cols=174 Identities=14% Similarity=0.126 Sum_probs=138.7
Q ss_pred CCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcc
Q 045150 481 NSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSS 560 (841)
Q Consensus 481 ~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~ 560 (841)
.++++.|.+.++.... ..+..|.++++|++|+|++|. +++ ..|..|+++++|++|+|++| .+..+|..
T Consensus 25 ~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~------i~~-~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 92 (549)
T 2z81_A 25 TAAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSR------INT-IEGDAFYSLGSLEHLDLSDN-HLSSLSSS 92 (549)
T ss_dssp CTTCCEEECCSSCCCE----ECSSTTSSCTTCCEEECTTSC------CCE-ECTTTTTTCTTCCEEECTTS-CCCSCCHH
T ss_pred CCCccEEECcCCccCc----cChhhhhcCCcccEEECCCCC------cCc-cChhhccccccCCEEECCCC-ccCccCHH
Confidence 4689999999987642 445678999999999999999 873 45578999999999999999 67766654
Q ss_pred -cCCCCCCCeeecC-Ccccc--cCccccccccccceec---cccc---ccCCccccccccccccccc--chhcccccccc
Q 045150 561 -IFNLPGLQTLDLS-RCIVQ--LPPETDMMRELRHLIG---KLIG---TLPIENLTNLQTLKYVRCK--SWIRVNTAKLV 628 (841)
Q Consensus 561 -i~~L~~L~~L~L~-~~~~~--lp~~~~~L~~L~~L~~---~~~~---~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~ 628 (841)
++++++|++|+++ |.+.. .|..+.++++|++|.. .... +..++.+++|++|++.++. ...+..++.++
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 9999999999999 76664 5678999999999943 2122 2348899999999999988 55778899999
Q ss_pred CCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCc
Q 045150 629 NLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTV 671 (841)
Q Consensus 629 ~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~ 671 (841)
+|++|++..+... ......+..+++|+.|++++|.+.+
T Consensus 173 ~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 173 DIHHLTLHLSESA-----FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEEEEEECSBST-----THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cCceEecccCccc-----ccchhhHhhcccccEEEccCCcccc
Confidence 9999999988633 2221334568999999999987765
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=3.4e-20 Score=206.96 Aligned_cols=257 Identities=18% Similarity=0.128 Sum_probs=154.1
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCc
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPS 559 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~ 559 (841)
.+++++.|.+.++.... .+ .+..+++|++|+|++|. ++ .+| ++.+++|++|++++| .+..+|
T Consensus 40 ~l~~L~~L~Ls~n~l~~-----~~-~l~~l~~L~~L~Ls~n~------l~--~~~--~~~l~~L~~L~Ls~N-~l~~~~- 101 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD-----MT-GIEKLTGLTKLICTSNN------IT--TLD--LSQNTNLTYLACDSN-KLTNLD- 101 (457)
T ss_dssp HHTTCCEEECCSSCCCC-----CT-TGGGCTTCSEEECCSSC------CS--CCC--CTTCTTCSEEECCSS-CCSCCC-
T ss_pred HcCCCCEEEccCCCccc-----Ch-hhcccCCCCEEEccCCc------CC--eEc--cccCCCCCEEECcCC-CCceee-
Confidence 45667777776665531 12 46677777777777777 66 444 677777777777777 566664
Q ss_pred ccCCCCCCCeeecC-CcccccCccccccccccceec---ccccccCCcccccccccccccccchhccccccccCCCceEE
Q 045150 560 SIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIG---KLIGTLPIENLTNLQTLKYVRCKSWIRVNTAKLVNLRELHI 635 (841)
Q Consensus 560 ~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~---~~~~~~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l 635 (841)
++++++|++|+++ +.+..+| +..+++|++|.. .... .+++.+++|+.|++.+|.......++.+++|+.|++
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 177 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC 177 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred -cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence 6777777777777 5666654 667777777733 2222 346777777777777774221125667777777777
Q ss_pred eccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecccc-CCCCccccccCCC
Q 045150 636 VGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPKDMHVLLPN 714 (841)
Q Consensus 636 ~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~ 714 (841)
++|... .. . +..+++|+.|++++|.+.+. .+..+++|+.|++++|. ..+| +..+ ++
T Consensus 178 s~n~l~---~l----~-l~~l~~L~~L~l~~N~l~~~------------~l~~l~~L~~L~Ls~N~l~~ip--~~~l-~~ 234 (457)
T 3bz5_A 178 SFNKIT---EL----D-VSQNKLLNRLNCDTNNITKL------------DLNQNIQLTFLDCSSNKLTEID--VTPL-TQ 234 (457)
T ss_dssp CSSCCC---CC----C-CTTCTTCCEEECCSSCCSCC------------CCTTCTTCSEEECCSSCCSCCC--CTTC-TT
T ss_pred CCCccc---ee----c-cccCCCCCEEECcCCcCCee------------ccccCCCCCEEECcCCcccccC--cccc-CC
Confidence 776533 11 1 45667777777777744321 24556677777777753 3355 4444 77
Q ss_pred ccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccc--eEEcCCCcccccceeccccccCceEEE
Q 045150 715 LECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKK--LSCRAEGFPLLEILLLDAVEVGIVEWQ 785 (841)
Q Consensus 715 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~--~~~~~~~f~~L~~L~l~~~~~~l~~~~ 785 (841)
|+.|++++|.+++.+ ++.+++|+.|++++|.+......... -....+.+++|+.|++++|. .+..++
T Consensus 235 L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~-~l~~l~ 303 (457)
T 3bz5_A 235 LTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT-QLYLLD 303 (457)
T ss_dssp CSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCT-TCCEEE
T ss_pred CCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCc-ccceec
Confidence 777777777776543 34455555555555444322111000 01123456777777777776 566665
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=216.65 Aligned_cols=330 Identities=16% Similarity=0.119 Sum_probs=187.9
Q ss_pred cCccceEeeeeecCCCeeeecc--CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchh
Q 045150 458 VQSSCRRQAIYSETPSFFWLHH--SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNK 535 (841)
Q Consensus 458 ~~~~~r~l~i~~~~~~~~~~~~--~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~ 535 (841)
.+..++++.+..+....+.... .+++|+.|.+.++.... ..+..|.++++|++|+|++|. ++. ..|.
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----i~~~~~~~l~~L~~L~L~~n~------l~~-~~~~ 94 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNP------IQS-LALG 94 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCC------CCE-ECTT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc----cCcccccCchhCCEEeCcCCc------CCc-cCHh
Confidence 4556778877766555554332 67788888887776532 334567777788888888777 652 3335
Q ss_pred hccccCcceeeecCCCcCccccCc-ccCCCCCCCeeecC-Ccccc--cCccccccccccceecc---ccc--ccCCcc--
Q 045150 536 KLGKLIHLKYLGIRGTTFIRDFPS-SIFNLPGLQTLDLS-RCIVQ--LPPETDMMRELRHLIGK---LIG--TLPIEN-- 604 (841)
Q Consensus 536 ~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~-~~~~~--lp~~~~~L~~L~~L~~~---~~~--~~~i~~-- 604 (841)
.|+++++|++|++++| .+..+|. .++++++|++|+++ |.+.. +|..+.++++|++|... ... +..++.
T Consensus 95 ~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 95 AFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred hhcCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 6777777777777777 5665554 56777777777777 54443 56677777777776321 100 011122
Q ss_pred --------------------------------------------------------------------------------
Q 045150 605 -------------------------------------------------------------------------------- 604 (841)
Q Consensus 605 -------------------------------------------------------------------------------- 604 (841)
T Consensus 174 ~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred ccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence
Q ss_pred ---------------------------ccccccccccccc-chhccccccccCCCceEEeccCCCCcCccccc-------
Q 045150 605 ---------------------------LTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFS------- 649 (841)
Q Consensus 605 ---------------------------l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~------- 649 (841)
+++|+.|++.++. ...+..+..+ +|++|++.+|.........+.
T Consensus 254 l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l 332 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTF 332 (570)
T ss_dssp GGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEE
T ss_pred ccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeC
Confidence 2233333333222 1122222222 233333332221100000000
Q ss_pred -------HHHHhccCCcceEEeeecCCCccC--CCCCcccccC--------------CCCCCCcccceeEeccccC-CC-
Q 045150 650 -------FESIAKLKNLQFLSVNLSDGTVVL--PQSSNAFASL--------------QPLSHCQRLVDLRLTGRMT-TL- 704 (841)
Q Consensus 650 -------~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~l--------------~~l~~~~~L~~L~L~~~~~-~~- 704 (841)
......+++|+.|++++|.+.... +..+..++.+ ..+..+++|+.|++++|.. ..
T Consensus 333 ~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp ESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCT
T ss_pred cCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccccc
Confidence 000034567777777776554321 1100000000 0144567788888887532 22
Q ss_pred C-ccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceE
Q 045150 705 P-KDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVE 783 (841)
Q Consensus 705 p-~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~ 783 (841)
| ..+..+ ++|+.|+|++|.+....+..++++++|+.|+|++|.+++ ..++.....+++|+.|++++|. ++.
T Consensus 413 ~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~p~~~~~l~~L~~L~l~~n~--l~~ 484 (570)
T 2z63_A 413 EFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-----NFLPDIFTELRNLTFLDLSQCQ--LEQ 484 (570)
T ss_dssp TSCTTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG-----GEECSCCTTCTTCCEEECTTSC--CCE
T ss_pred chhhhhcC-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc-----ccchhhhhcccCCCEEECCCCc--ccc
Confidence 2 234444 888888888888777777778888888888888875431 1122334678899999999987 777
Q ss_pred E-EEccCccccccccccccccCCC-CCCc
Q 045150 784 W-QVEERAMPMLRGLKIPSDIPNL-NIPE 810 (841)
Q Consensus 784 ~-~~~~~~~p~L~~L~l~~~c~~L-~lp~ 810 (841)
+ +.....+++|++|+++ +| ++ .+|.
T Consensus 485 ~~~~~~~~l~~L~~L~l~-~n-~l~~~~~ 511 (570)
T 2z63_A 485 LSPTAFNSLSSLQVLNMA-SN-QLKSVPD 511 (570)
T ss_dssp ECTTTTTTCTTCCEEECC-SS-CCSCCCT
T ss_pred CChhhhhcccCCCEEeCC-CC-cCCCCCH
Confidence 6 3345678999999999 66 56 5543
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=225.14 Aligned_cols=299 Identities=16% Similarity=0.115 Sum_probs=201.1
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccc-hhhccccCcceeeecCCCcCccccC
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLH-NKKLGKLIHLKYLGIRGTTFIRDFP 558 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~-p~~i~~L~~L~~L~L~~~~~~~~lp 558 (841)
..++++.|.+.++.... ..+..|.++++|++|+|++|.. +. .+ |..|+++++|++|+|++|......|
T Consensus 22 lp~~l~~LdLs~N~i~~----i~~~~~~~l~~L~~LdLs~n~~-----~~--~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRT----VTASSFPFLEQLQLLELGSQYT-----PL--TIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp SCTTCCEEEEESCCCCE----ECSSSCSSCCSCSEEEECTTCC-----CC--EECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCcCEEECCCCcCCc----cChhHCcccccCeEEeCCCCCC-----cc--ccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 45677888887776532 3345677888888888888851 22 33 6778888888888888883333447
Q ss_pred cccCCCCCCCeeecC-Ccccc-cCcc--ccccccccceec---ccccc---cCCccccccccccccccc--chhcccccc
Q 045150 559 SSIFNLPGLQTLDLS-RCIVQ-LPPE--TDMMRELRHLIG---KLIGT---LPIENLTNLQTLKYVRCK--SWIRVNTAK 626 (841)
Q Consensus 559 ~~i~~L~~L~~L~L~-~~~~~-lp~~--~~~L~~L~~L~~---~~~~~---~~i~~l~~L~~L~l~~~~--~~~~~~l~~ 626 (841)
..++++++|++|+|+ |.+.. +|.. +.++++|++|+. ..... ..++++++|++|++.+|. ...+..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 778888888888888 55554 4444 777888888832 22221 237788888888888776 344555666
Q ss_pred c--cCCCceEEeccCCCCcCcccccHHHHhccC------CcceEEeeecCCCccCCCCCccc------------------
Q 045150 627 L--VNLRELHIVGGDGQSMGEMEFSFESIAKLK------NLQFLSVNLSDGTVVLPQSSNAF------------------ 680 (841)
Q Consensus 627 l--~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~------~L~~L~l~~~~~~~~~~~~~~~~------------------ 680 (841)
+ ++|+.|+++.|..... .+ ..+..+. +|+.|++++|.+.+..+..+...
T Consensus 171 l~~~~L~~L~L~~n~l~~~--~~---~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSR--VS---VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp HHHCSSCCCEECCSBSCCC--CC---CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred ccCCccceEECCCCccccc--cc---cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 6 7788888877764321 11 1122222 47888888776554433222110
Q ss_pred -------c--cCCCCCC--CcccceeEeccccCC--CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecc
Q 045150 681 -------A--SLQPLSH--CQRLVDLRLTGRMTT--LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFY 747 (841)
Q Consensus 681 -------~--~l~~l~~--~~~L~~L~L~~~~~~--~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N 747 (841)
. ....+.. +++|+.|++++|... .|..+..+ ++|+.|+|++|.+....+..++.+++|+.|+|++|
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC
Confidence 0 0011122 368999999987433 45556665 99999999999998877788999999999999999
Q ss_pred cCCCCCccccceEEcCCCcccccceeccccccCceEEEEc-cCccccccccccccccC
Q 045150 748 RDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVE-ERAMPMLRGLKIPSDIP 804 (841)
Q Consensus 748 ~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~-~~~~p~L~~L~l~~~c~ 804 (841)
.+++.. ......+++|+.|++++|. +..++.. ...+++|+.|+++ +|.
T Consensus 325 ~l~~~~------~~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~Ls-~N~ 373 (844)
T 3j0a_A 325 LLGELY------SSNFYGLPKVAYIDLQKNH--IAIIQDQTFKFLEKLQTLDLR-DNA 373 (844)
T ss_dssp CCSCCC------SCSCSSCTTCCEEECCSCC--CCCCCSSCSCSCCCCCEEEEE-TCC
T ss_pred CCCccC------HHHhcCCCCCCEEECCCCC--CCccChhhhcCCCCCCEEECC-CCC
Confidence 776432 1234578999999999997 7776543 4578999999999 663
No 32
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=1.6e-20 Score=219.27 Aligned_cols=148 Identities=14% Similarity=-0.012 Sum_probs=80.4
Q ss_pred cCccceEeeeeecCCCeeeecc--CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchh
Q 045150 458 VQSSCRRQAIYSETPSFFWLHH--SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNK 535 (841)
Q Consensus 458 ~~~~~r~l~i~~~~~~~~~~~~--~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~ 535 (841)
.+..++++.+..+....+.... .+++|++|.+.++.... ..+..|.++++|++|+|++|. +.. ..|.
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~------l~~-~~~~ 99 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW----IHEDTFQSQHRLDTLVLTANP------LIF-MAET 99 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCC------CSE-ECTT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce----eChhhccCccccCeeeCCCCc------ccc-cChh
Confidence 3445666666655555443322 56666666666655421 334556666666666666666 542 3455
Q ss_pred hccccCcceeeecCCCcCcccc-CcccCCCCCCCeeecC-CcccccC-ccccccccccceec---cccc--ccCCccccc
Q 045150 536 KLGKLIHLKYLGIRGTTFIRDF-PSSIFNLPGLQTLDLS-RCIVQLP-PETDMMRELRHLIG---KLIG--TLPIENLTN 607 (841)
Q Consensus 536 ~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~-~~~~~lp-~~~~~L~~L~~L~~---~~~~--~~~i~~l~~ 607 (841)
.++++++|++|++++| .+..+ |..++++++|++|+++ |.+..++ +.+..+++|++|.. .... +..++.+++
T Consensus 100 ~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp TTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred hhcccccccEeecccc-CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcc
Confidence 6666666666666666 44444 4556666666666666 4454432 22333666666632 1111 111455555
Q ss_pred cc--cccccccc
Q 045150 608 LQ--TLKYVRCK 617 (841)
Q Consensus 608 L~--~L~l~~~~ 617 (841)
|+ .|++.++.
T Consensus 179 L~~l~L~l~~n~ 190 (606)
T 3t6q_A 179 ATNLSLNLNGND 190 (606)
T ss_dssp CCSEEEECTTCC
T ss_pred cceeEEecCCCc
Confidence 55 45555554
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=2.9e-20 Score=198.41 Aligned_cols=213 Identities=23% Similarity=0.231 Sum_probs=120.1
Q ss_pred ceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCcccccccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRE 588 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~ 588 (841)
..++.|+|++|. ++ .+|..++++++|++|+|++| .+..+|..++++++|++|+|+ |.+..+|..+.++++
T Consensus 81 ~~l~~L~L~~n~------l~--~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 151 (328)
T 4fcg_A 81 PGRVALELRSVP------LP--QFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNR 151 (328)
T ss_dssp TTCCEEEEESSC------CS--SCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTT
T ss_pred cceeEEEccCCC------ch--hcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcC
Confidence 344444444444 44 44444444444555555444 333444444444455555554 344444444444444
Q ss_pred ccceec---ccccc-----------cCCccccccccccccccc-chhccccccccCCCceEEeccCCCCcCcccccHHHH
Q 045150 589 LRHLIG---KLIGT-----------LPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESI 653 (841)
Q Consensus 589 L~~L~~---~~~~~-----------~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l 653 (841)
|++|.. ...+. ..++.+++|++|++.+|. ...+..++.+++|+.|++++|... .++ ..+
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-----~l~-~~l 225 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-----ALG-PAI 225 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-----CCC-GGG
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-----cCc-hhh
Confidence 444421 11111 113346677777777766 455566777777777777776533 222 456
Q ss_pred hccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecccc--CCCCccccccCCCccEEEEEeccCCCCChh
Q 045150 654 AKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM--TTLPKDMHVLLPNLECLSLKVVLPEENPMP 731 (841)
Q Consensus 654 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~ 731 (841)
..+++|+.|++++|.+.+..|.. +..+++|+.|++++|. ..+|.++..+ ++|+.|+|++|.+.+..|.
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~---------~~~l~~L~~L~L~~n~~~~~~p~~~~~l-~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPI---------FGGRAPLKRLILKDCSNLLTLPLDIHRL-TQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCC---------TTCCCCCCEEECTTCTTCCBCCTTGGGC-TTCCEEECTTCTTCCCCCG
T ss_pred ccCCCCCEEECcCCcchhhhHHH---------hcCCCCCCEEECCCCCchhhcchhhhcC-CCCCEEeCCCCCchhhccH
Confidence 67777777777777555443322 3445667777777642 3366666665 7777777777776667777
Q ss_pred hhhhcccCCeEEEecc
Q 045150 732 ALEMLSNLTILDLNFY 747 (841)
Q Consensus 732 ~l~~l~~L~~L~L~~N 747 (841)
.++++++|+.+++..|
T Consensus 296 ~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 296 LIAQLPANCIILVPPH 311 (328)
T ss_dssp GGGGSCTTCEEECCGG
T ss_pred HHhhccCceEEeCCHH
Confidence 7777777777777654
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=211.68 Aligned_cols=113 Identities=18% Similarity=0.120 Sum_probs=67.6
Q ss_pred ccceEeeeeecCCCeeeecc--CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhc
Q 045150 460 SSCRRQAIYSETPSFFWLHH--SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKL 537 (841)
Q Consensus 460 ~~~r~l~i~~~~~~~~~~~~--~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i 537 (841)
..++++.+..+....++... .+++|+.|.+.++.... ..+..|.++++|++|+|++|. ++ .+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~------l~--~lp~~- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY----LDISVFKFNQELEYLDLSHNK------LV--KISCH- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE----EEGGGGTTCTTCCEEECCSSC------CC--EEECC-
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCC----cChHHhhcccCCCEEecCCCc------ee--ecCcc-
Confidence 45666666655554443222 56677777777665532 334566677777777777776 66 56654
Q ss_pred cccCcceeeecCCCcCccc--cCcccCCCCCCCeeecC-CcccccCccccccccc
Q 045150 538 GKLIHLKYLGIRGTTFIRD--FPSSIFNLPGLQTLDLS-RCIVQLPPETDMMREL 589 (841)
Q Consensus 538 ~~L~~L~~L~L~~~~~~~~--lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L 589 (841)
.+++|++|+|++| .+.. +|..++++++|++|+++ +.+.. ..+..+++|
T Consensus 88 -~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L 138 (520)
T 2z7x_B 88 -PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHL 138 (520)
T ss_dssp -CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTS
T ss_pred -ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccch--hhccccccc
Confidence 6777777777777 4443 45667777777777777 44432 234444444
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=6.3e-20 Score=212.95 Aligned_cols=277 Identities=14% Similarity=0.063 Sum_probs=172.9
Q ss_pred ccceEeeeeecCCCeeeecc--CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhc
Q 045150 460 SSCRRQAIYSETPSFFWLHH--SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKL 537 (841)
Q Consensus 460 ~~~r~l~i~~~~~~~~~~~~--~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i 537 (841)
..++.+.+..+....++... .+++|+.|.+.++.... ..+..|..+++|++|+|++|. +.+ ..|..+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~------l~~-~~~~~~ 119 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNA------IRY-LPPHVF 119 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSC------CCC-CCTTTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC----CChHHhcCCCCCCEEECCCCc------CCC-CCHHHH
Confidence 34566666644445554332 67889999998877642 444578889999999999998 773 445567
Q ss_pred cccCcceeeecCCCcCccccCcc-cCCCCCCCeeecC-CcccccCc-cccccccccceec--ccccccCCcccccccccc
Q 045150 538 GKLIHLKYLGIRGTTFIRDFPSS-IFNLPGLQTLDLS-RCIVQLPP-ETDMMRELRHLIG--KLIGTLPIENLTNLQTLK 612 (841)
Q Consensus 538 ~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~-~~~~~lp~-~~~~L~~L~~L~~--~~~~~~~i~~l~~L~~L~ 612 (841)
+++++|++|+|++| .+..+|.. ++++++|++|+|+ |.+..+++ .+.++++|++|.. +.....+++.+++|+.|+
T Consensus 120 ~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~ 198 (597)
T 3oja_B 120 QNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN 198 (597)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEE
T ss_pred cCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhh
Confidence 88999999999999 77788766 4889999999999 67766655 6888999999843 222233466777777777
Q ss_pred cccccchhcccccccc---------------------CCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCc
Q 045150 613 YVRCKSWIRVNTAKLV---------------------NLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTV 671 (841)
Q Consensus 613 l~~~~~~~~~~l~~l~---------------------~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~ 671 (841)
+.++.- ..+...+ +|+.|++++|.... . ..+..+++|+.|+|++|.+.+
T Consensus 199 l~~n~l---~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~------~-~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 199 VSYNLL---STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD------T-AWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp CCSSCC---SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC------C-GGGGGCTTCSEEECCSSCCCE
T ss_pred cccCcc---ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC------C-hhhccCCCCCEEECCCCccCC
Confidence 766541 1122223 45555555443221 1 345556666666666664443
Q ss_pred cCCCCCcccccCCCCCCCcccceeEeccccC-CCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCC
Q 045150 672 VLPQSSNAFASLQPLSHCQRLVDLRLTGRMT-TLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDS 750 (841)
Q Consensus 672 ~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~ 750 (841)
..|. .+..+++|+.|+|++|.. .+|..+..+ ++|+.|+|++|.++ ..+..++.+++|+.|+|++|.++
T Consensus 269 ~~~~---------~~~~l~~L~~L~Ls~N~l~~l~~~~~~l-~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 269 IMYH---------PFVKMQRLERLYISNNRLVALNLYGQPI-PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp EESG---------GGTTCSSCCEEECTTSCCCEEECSSSCC-TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred CCHH---------HhcCccCCCEEECCCCCCCCCCcccccC-CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 2221 233455666666666532 244444443 66666666666664 34445566666666666666554
Q ss_pred CCCccccceEEcCCCcccccceeccccc
Q 045150 751 GDPYHEKKLSCRAEGFPLLEILLLDAVE 778 (841)
Q Consensus 751 ~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 778 (841)
+.. ...+++|+.|++++|+
T Consensus 338 ~~~---------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 338 TLK---------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCC---------CCTTCCCSEEECCSSC
T ss_pred CcC---------hhhcCCCCEEEeeCCC
Confidence 332 2346666666666665
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=1.2e-20 Score=200.11 Aligned_cols=224 Identities=18% Similarity=0.162 Sum_probs=124.2
Q ss_pred CceeeEEEeecccccccccchhHHhccCceeeEEEeec-CCcccccccccccchhhccccCcceeeecCCCcCccccCcc
Q 045150 482 SLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEE-SGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSS 560 (841)
Q Consensus 482 ~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~-~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~ 560 (841)
.+++.|.+.++.... ...++..|.++++|++|++++ |. +.+ .+|..++++++|++|+|++|.....+|..
T Consensus 50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~------l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINN------LVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETT------EES-CCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCc------ccc-cCChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence 567777777665421 002345667777777777774 55 543 56777777777777777777333367777
Q ss_pred cCCCCCCCeeecC-Cccc-ccCccccccccccceecccccccCCccccccccccccccc--chhcccccccc-CCCceEE
Q 045150 561 IFNLPGLQTLDLS-RCIV-QLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK--SWIRVNTAKLV-NLRELHI 635 (841)
Q Consensus 561 i~~L~~L~~L~L~-~~~~-~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~-~L~~L~l 635 (841)
+.++++|++|+++ +.+. .+|..+ +.+++|++|++.+|. +..+..+..++ +|+.|++
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~-------------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSI-------------------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGG-------------------GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC
T ss_pred HhCCCCCCEEeCCCCccCCcCChHH-------------------hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC
Confidence 7777777777777 5544 344443 344555555555555 34556666666 6777777
Q ss_pred eccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC-CCccccccCCC
Q 045150 636 VGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT-LPKDMHVLLPN 714 (841)
Q Consensus 636 ~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~-~p~~~~~l~~~ 714 (841)
++|.... ..+ ..+..+. |+.|++++|.+.+..|. .+..+++|+.|++++|... .+..+..+ ++
T Consensus 182 ~~N~l~~----~~~-~~~~~l~-L~~L~Ls~N~l~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~l-~~ 245 (313)
T 1ogq_A 182 SRNRLTG----KIP-PTFANLN-LAFVDLSRNMLEGDASV---------LFGSDKNTQKIHLAKNSLAFDLGKVGLS-KN 245 (313)
T ss_dssp CSSEEEE----ECC-GGGGGCC-CSEEECCSSEEEECCGG---------GCCTTSCCSEEECCSSEECCBGGGCCCC-TT
T ss_pred cCCeeec----cCC-hHHhCCc-ccEEECcCCcccCcCCH---------HHhcCCCCCEEECCCCceeeecCccccc-CC
Confidence 6664220 111 4455554 66666666644332211 1333445555555554222 22223332 55
Q ss_pred ccEEEEEeccCCCCChhhhhhcccCCeEEEecccC
Q 045150 715 LECLSLKVVLPEENPMPALEMLSNLTILDLNFYRD 749 (841)
Q Consensus 715 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l 749 (841)
|++|+|++|.+++..+..++.+++|+.|+|++|++
T Consensus 246 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 55555555555444445555555555555555443
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=3.2e-20 Score=214.24 Aligned_cols=318 Identities=14% Similarity=0.033 Sum_probs=190.5
Q ss_pred cCccceEeeeeecCCCeeeecc--CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchh
Q 045150 458 VQSSCRRQAIYSETPSFFWLHH--SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNK 535 (841)
Q Consensus 458 ~~~~~r~l~i~~~~~~~~~~~~--~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~ 535 (841)
.+..++.+.+..+....++... .+++|+.|.+.++.... ..+..|.++++|++|+|++|. ++ .+|.
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~------l~--~lp~ 117 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS----LDFHVFLFNQDLEYLDVSHNR------LQ--NISC 117 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE----ECTTTTTTCTTCCEEECTTSC------CC--EECS
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc----CCHHHhCCCCCCCEEECCCCc------CC--ccCc
Confidence 4567899999877777665433 88999999999987642 446778999999999999999 88 7887
Q ss_pred hccccCcceeeecCCCcCcccc--CcccCCCCCCCeeecC-CcccccCccccccccc--cceec---cc--ccc--cC--
Q 045150 536 KLGKLIHLKYLGIRGTTFIRDF--PSSIFNLPGLQTLDLS-RCIVQLPPETDMMREL--RHLIG---KL--IGT--LP-- 601 (841)
Q Consensus 536 ~i~~L~~L~~L~L~~~~~~~~l--p~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L--~~L~~---~~--~~~--~~-- 601 (841)
. .+++|++|+|++| .+..+ |..++++++|++|+++ +.+.. ..+..+++| ++|.. .. ... ..
T Consensus 118 ~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~ 192 (562)
T 3a79_B 118 C--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192 (562)
T ss_dssp C--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEE
T ss_pred c--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCccccc
Confidence 6 8999999999999 67665 4789999999999999 55543 234555555 65522 11 000 00
Q ss_pred ------------------------Cccccccccccccccc------chhccc---------------------------c
Q 045150 602 ------------------------IENLTNLQTLKYVRCK------SWIRVN---------------------------T 624 (841)
Q Consensus 602 ------------------------i~~l~~L~~L~l~~~~------~~~~~~---------------------------l 624 (841)
+..+++|+.|++.++. ...+.. .
T Consensus 193 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~ 272 (562)
T 3a79_B 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272 (562)
T ss_dssp ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH
T ss_pred ccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh
Confidence 1223344444433321 000000 0
Q ss_pred ccccCCCceEEeccCCCCcCcc-----------------------ccc---HHH----------------------Hhcc
Q 045150 625 AKLVNLRELHIVGGDGQSMGEM-----------------------EFS---FES----------------------IAKL 656 (841)
Q Consensus 625 ~~l~~L~~L~l~~~~~~~~g~~-----------------------~~~---~~~----------------------l~~l 656 (841)
...++|++|++++|.....-.. .++ ... ...+
T Consensus 273 ~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l 352 (562)
T 3a79_B 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP 352 (562)
T ss_dssp HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSC
T ss_pred hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCC
Confidence 0001333333333321100000 000 000 0456
Q ss_pred CCcceEEeeecCCCccCCCCCcccccC-----------------CCCCCCcccceeEeccccC-C-CCccccccCCCccE
Q 045150 657 KNLQFLSVNLSDGTVVLPQSSNAFASL-----------------QPLSHCQRLVDLRLTGRMT-T-LPKDMHVLLPNLEC 717 (841)
Q Consensus 657 ~~L~~L~l~~~~~~~~~~~~~~~~~~l-----------------~~l~~~~~L~~L~L~~~~~-~-~p~~~~~l~~~L~~ 717 (841)
++|+.|++++|.+.+..|..+..++.+ ..+..+++|+.|++++|.. . +|......+++|+.
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 677777777776655444332222111 0134456667777766532 2 45443322367777
Q ss_pred EEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEc-cCccccccc
Q 045150 718 LSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVE-ERAMPMLRG 796 (841)
Q Consensus 718 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~-~~~~p~L~~ 796 (841)
|+|++|.+++..+..+. ++|+.|+|++|+++..+ .....+++|+.|++++|. ++.++.. ...+++|+.
T Consensus 433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip-------~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIP-------KDVTHLQALQELNVASNQ--LKSVPDGVFDRLTSLQY 501 (562)
T ss_dssp EECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCC-------TTTTSSCCCSEEECCSSC--CCCCCTTSTTTCTTCCC
T ss_pred EECCCCCCCcchhhhhc--CcCCEEECCCCcCcccC-------hhhcCCCCCCEEECCCCC--CCCCCHHHHhcCCCCCE
Confidence 77777766543332222 57777777777665322 122368999999999997 8888766 678999999
Q ss_pred cccccccC
Q 045150 797 LKIPSDIP 804 (841)
Q Consensus 797 L~l~~~c~ 804 (841)
|+++ ++|
T Consensus 502 L~l~-~N~ 508 (562)
T 3a79_B 502 IWLH-DNP 508 (562)
T ss_dssp EECC-SCC
T ss_pred EEec-CCC
Confidence 9999 776
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=6.4e-20 Score=196.72 Aligned_cols=262 Identities=16% Similarity=0.135 Sum_probs=169.0
Q ss_pred ceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCcccc-CcccCCCCCCCeeecC-CcccccCccccccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDF-PSSIFNLPGLQTLDLS-RCIVQLPPETDMMR 587 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~ 587 (841)
+.|++|++++|. ++. ..|..+.++++|++|+|++| .+..+ |..++++++|++|+++ +.+..+|..+. +
T Consensus 54 ~~l~~L~l~~n~------i~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~ 123 (332)
T 2ft3_A 54 PDTTLLDLQNND------ISE-LRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--S 123 (332)
T ss_dssp TTCCEEECCSSC------CCE-ECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--T
T ss_pred CCCeEEECCCCc------CCc-cCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--c
Confidence 467777777776 652 22446777777777777777 44444 5667777777777777 56666666554 5
Q ss_pred cccceec---cccccc--CCccccccccccccccc-c---hhccccccccCCCceEEeccCCCCcCcccccHHHHhccCC
Q 045150 588 ELRHLIG---KLIGTL--PIENLTNLQTLKYVRCK-S---WIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKN 658 (841)
Q Consensus 588 ~L~~L~~---~~~~~~--~i~~l~~L~~L~l~~~~-~---~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~ 658 (841)
+|++|.. ...... .++.+++|+.|++.++. . ..+..+..+ +|+.|++++|.... .+ ..+ .++
T Consensus 124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~---l~---~~~--~~~ 194 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG---IP---KDL--PET 194 (332)
T ss_dssp TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS---CC---SSS--CSS
T ss_pred cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc---cC---ccc--cCC
Confidence 6666632 111111 26777888888888776 2 345556666 88889888876442 11 222 268
Q ss_pred cceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccC-CCC-ccccccCCCccEEEEEeccCCCCChhhhhhc
Q 045150 659 LQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMT-TLP-KDMHVLLPNLECLSLKVVLPEENPMPALEML 736 (841)
Q Consensus 659 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~-~~p-~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l 736 (841)
|+.|++++|.+....+ ..+..+++|+.|++++|.. .++ .++..+ ++|+.|+|++|.++ ..+..++.+
T Consensus 195 L~~L~l~~n~i~~~~~---------~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 195 LNELHLDHNKIQAIEL---------EDLLRYSKLYRLGLGHNQIRMIENGSLSFL-PTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp CSCCBCCSSCCCCCCT---------TSSTTCTTCSCCBCCSSCCCCCCTTGGGGC-TTCCEEECCSSCCC-BCCTTGGGC
T ss_pred CCEEECCCCcCCccCH---------HHhcCCCCCCEEECCCCcCCcCChhHhhCC-CCCCEEECCCCcCe-ecChhhhcC
Confidence 9999999886554322 2355677899999998743 344 356665 99999999999986 456678999
Q ss_pred ccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEE---ccCccccccccccccccC
Q 045150 737 SNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQV---EERAMPMLRGLKIPSDIP 804 (841)
Q Consensus 737 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~---~~~~~p~L~~L~l~~~c~ 804 (841)
++|+.|+|++|.+++.....-.-......+++|+.|++.+|+ +..+.. ....+++|+.|+++ +|.
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~--~~~~~~~~~~~~~l~~L~~l~l~-~n~ 331 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP--VPYWEVQPATFRCVTDRLAIQFG-NYK 331 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS--SCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCc--ccccccCcccccccchhhhhhcc-ccc
Confidence 999999999998875432211000011236789999999998 553322 23457788888888 664
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=1.2e-19 Score=202.64 Aligned_cols=266 Identities=16% Similarity=0.065 Sum_probs=201.1
Q ss_pred HhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccc
Q 045150 505 LFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPET 583 (841)
Q Consensus 505 ~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~ 583 (841)
.+..+++|++|++++|. ++ .+| .++.+++|++|+|++| .+..+| ++.+++|++|+++ |.+..+| +
T Consensus 37 ~~~~l~~L~~L~Ls~n~------l~--~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~ 102 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS------IT--DMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD--V 102 (457)
T ss_dssp EHHHHTTCCEEECCSSC------CC--CCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC--C
T ss_pred ChhHcCCCCEEEccCCC------cc--cCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee--c
Confidence 46778999999999999 88 566 7999999999999999 788886 8999999999999 7777775 8
Q ss_pred cccccccceec--ccccccCCcccccccccccccccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcce
Q 045150 584 DMMRELRHLIG--KLIGTLPIENLTNLQTLKYVRCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQF 661 (841)
Q Consensus 584 ~~L~~L~~L~~--~~~~~~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~ 661 (841)
+++++|++|.. +.....+++.+++|+.|++.+|.-... .++.+++|+.|++++|... +. ..+..+++|+.
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~--~~-----~~~~~l~~L~~ 174 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKI--TK-----LDVTPQTQLTT 174 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCC--CC-----CCCTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCCcc--cc-----cccccCCcCCE
Confidence 89999999943 222224589999999999999882222 4889999999999988522 11 13567899999
Q ss_pred EEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCCCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCe
Q 045150 662 LSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTI 741 (841)
Q Consensus 662 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~ 741 (841)
|++++|.+.+ + . +..+++|+.|++++|..+-. .+..+ ++|+.|+|++|.+++. + ++.+++|+.
T Consensus 175 L~ls~n~l~~--------l---~-l~~l~~L~~L~l~~N~l~~~-~l~~l-~~L~~L~Ls~N~l~~i-p--~~~l~~L~~ 237 (457)
T 3bz5_A 175 LDCSFNKITE--------L---D-VSQNKLLNRLNCDTNNITKL-DLNQN-IQLTFLDCSSNKLTEI-D--VTPLTQLTY 237 (457)
T ss_dssp EECCSSCCCC--------C---C-CTTCTTCCEEECCSSCCSCC-CCTTC-TTCSEEECCSSCCSCC-C--CTTCTTCSE
T ss_pred EECCCCccce--------e---c-cccCCCCCEEECcCCcCCee-ccccC-CCCCEEECcCCccccc-C--ccccCCCCE
Confidence 9999995543 2 1 56778999999999754322 25555 9999999999999874 2 889999999
Q ss_pred EEEecccCCCCCccc-cceEEcCCCcccccceeccccccCceEEEEccCccccccccccccccCCC-CCCcccc
Q 045150 742 LDLNFYRDSGDPYHE-KKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIPNL-NIPERLR 813 (841)
Q Consensus 742 L~L~~N~l~~~~~~~-~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~~L-~lp~~l~ 813 (841)
|++++|.+++..... ..+..-.-...+|+.|++++|. .+..++ .+.+++|+.|+++ +|+.+ .+|....
T Consensus 238 L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~-~~~~~~--~~~l~~L~~L~Ls-~n~~l~~l~~~~~ 307 (457)
T 3bz5_A 238 FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNT-QLIYFQ--AEGCRKIKELDVT-HNTQLYLLDCQAA 307 (457)
T ss_dssp EECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCT-TCCEEE--CTTCTTCCCCCCT-TCTTCCEEECTTC
T ss_pred EEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCc-cCCccc--ccccccCCEEECC-CCcccceeccCCC
Confidence 999999887654210 0000000112356677777777 666666 4678999999999 99877 7775433
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=5.9e-20 Score=214.46 Aligned_cols=148 Identities=19% Similarity=0.155 Sum_probs=116.1
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCcccc-C
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDF-P 558 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~l-p 558 (841)
-.++++.|.+.++.... ..+..|.++++|++|+|++|. ++. ..|..|+++++|++|+|++| .+..+ |
T Consensus 30 ~~~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~------l~~-i~~~~~~~l~~L~~L~Ls~n-~l~~~~p 97 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKI----LKSYSFSNFSELQWLDLSRCE------IET-IEDKAWHGLHHLSNLILTGN-PIQSFSP 97 (606)
T ss_dssp SCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCC------CCE-ECTTTTTTCTTCCEEECTTC-CCCCCCT
T ss_pred CCCCcCEEECCCCCcCE----eChhhccCCccCcEEeCCCCc------ccc-cCHHHhhchhhcCEeECCCC-cccccCh
Confidence 34789999999887642 445678999999999999999 873 44778999999999999999 56655 8
Q ss_pred cccCCCCCCCeeecC-CcccccC-ccccccccccceec---ccc---cccCCccccccccccccccc--chhcccccccc
Q 045150 559 SSIFNLPGLQTLDLS-RCIVQLP-PETDMMRELRHLIG---KLI---GTLPIENLTNLQTLKYVRCK--SWIRVNTAKLV 628 (841)
Q Consensus 559 ~~i~~L~~L~~L~L~-~~~~~lp-~~~~~L~~L~~L~~---~~~---~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~ 628 (841)
..++++++|++|+++ |.+..+| ..++++++|++|.. ... .+..++++++|++|++.+|. ...+..++.++
T Consensus 98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 889999999999999 7787777 67999999999943 222 24458999999999999987 33444555555
Q ss_pred CCC----ceEEeccC
Q 045150 629 NLR----ELHIVGGD 639 (841)
Q Consensus 629 ~L~----~L~l~~~~ 639 (841)
+|+ .|++++|.
T Consensus 178 ~L~~~l~~L~l~~n~ 192 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNP 192 (606)
T ss_dssp HCTTCCCEEECTTCC
T ss_pred ccccccceeeccCCC
Confidence 554 46666554
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=9.1e-20 Score=195.37 Aligned_cols=259 Identities=14% Similarity=0.091 Sum_probs=158.9
Q ss_pred ceeeEEEeecCCcccccccccccch-hhccccCcceeeecCCCcCcccc-CcccCCCCCCCeeecC-CcccccCcccccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHN-KKLGKLIHLKYLGIRGTTFIRDF-PSSIFNLPGLQTLDLS-RCIVQLPPETDMM 586 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p-~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~-~~~~~lp~~~~~L 586 (841)
+.|++|+|++|. ++ .++ ..++++++|++|+|++| .+..+ |..++++++|++|+++ +.+..+|..+.
T Consensus 52 ~~l~~L~L~~n~------i~--~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-- 120 (330)
T 1xku_A 52 PDTALLDLQNNK------IT--EIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-- 120 (330)
T ss_dssp TTCCEEECCSSC------CC--CBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--
T ss_pred CCCeEEECCCCc------CC--EeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--
Confidence 567888888887 66 344 36778888888888887 45544 6778888888888888 66767776554
Q ss_pred ccccceec---cccccc--CCccccccccccccccc----chhccccccccCCCceEEeccCCCCcCcccccHHHHhccC
Q 045150 587 RELRHLIG---KLIGTL--PIENLTNLQTLKYVRCK----SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLK 657 (841)
Q Consensus 587 ~~L~~L~~---~~~~~~--~i~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~ 657 (841)
++|++|.. ...... .+..+++|++|++.++. ...+..+..+++|+.|++++|.... .+ ..+ .+
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~---l~---~~~--~~ 192 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT---IP---QGL--PP 192 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS---CC---SSC--CT
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc---CC---ccc--cc
Confidence 56666632 111111 15667777777777765 1344567777778888877766331 11 111 26
Q ss_pred CcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC-C-CccccccCCCccEEEEEeccCCCCChhhhhh
Q 045150 658 NLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT-L-PKDMHVLLPNLECLSLKVVLPEENPMPALEM 735 (841)
Q Consensus 658 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~-~-p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~ 735 (841)
+|+.|++++|.+.+..+ ..+..+++|+.|++++|... + +.++..+ ++|+.|+|++|.++ ..+..+..
T Consensus 193 ~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 193 SLTELHLDGNKITKVDA---------ASLKGLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp TCSEEECTTSCCCEECT---------GGGTTCTTCCEEECCSSCCCEECTTTGGGS-TTCCEEECCSSCCS-SCCTTTTT
T ss_pred cCCEEECCCCcCCccCH---------HHhcCCCCCCEEECCCCcCceeChhhccCC-CCCCEEECCCCcCc-cCChhhcc
Confidence 77888887775443222 22445667888888776432 3 3355555 78888888888775 44556777
Q ss_pred cccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEc---cCccccccccccc
Q 045150 736 LSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVE---ERAMPMLRGLKIP 800 (841)
Q Consensus 736 l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~---~~~~p~L~~L~l~ 800 (841)
+++|+.|+|++|++++.....-.-......+++|+.|++.+|+ +..+.+. ...+++|+.++++
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~--~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP--VQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS--SCGGGSCGGGGTTCCCGGGEEC-
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc--ccccccCccccccccceeEEEec
Confidence 8888888888777765432111000011235677788888777 5543222 2345566666666
No 42
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.81 E-value=9.4e-21 Score=164.99 Aligned_cols=82 Identities=30% Similarity=0.532 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHhhhHHHHHhhhhc
Q 045150 4 AVVSFVVQRLGDYLIQEAKTLGGVRDEVESLKKELEWMQCFVKDAEAK--QAGNDLIRQWVSDIRDIAYDAEDVLDKYML 81 (841)
Q Consensus 4 ~~v~~~~~kl~~~l~~e~~~~~~v~~~~~~l~~~l~~i~~~l~~~~~~--~~~~~~~~~wl~~lr~~~yd~eD~ld~~~~ 81 (841)
|+++++++||++++.+|+.++.||++++++|++||++|++||.||+.+ +..+++++.|+++|||+|||+|||||+|.+
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999987 668999999999999999999999999999
Q ss_pred cccc
Q 045150 82 SVTP 85 (841)
Q Consensus 82 ~~~~ 85 (841)
++.+
T Consensus 81 ~~~~ 84 (115)
T 3qfl_A 81 QVDG 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 8764
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=2.1e-19 Score=191.71 Aligned_cols=228 Identities=21% Similarity=0.265 Sum_probs=165.3
Q ss_pred cCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceecccccccCCcccccccccccccccc
Q 045150 540 LIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCKS 618 (841)
Q Consensus 540 L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~~ 618 (841)
..++++|+|++| .+..+|..++++++|++|+|+ +.+..+|..+.
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~---------------------------------- 124 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQ---------------------------------- 124 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGG----------------------------------
T ss_pred ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHh----------------------------------
Confidence 578999999999 788999999999999999999 66666665443
Q ss_pred hhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEec
Q 045150 619 WIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLT 698 (841)
Q Consensus 619 ~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~ 698 (841)
.+++|+.|++++|... .++ ..+.++++|+.|++++|...+..|..+........+..+++|+.|+++
T Consensus 125 -------~l~~L~~L~Ls~n~l~-----~lp-~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 125 -------QFAGLETLTLARNPLR-----ALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191 (328)
T ss_dssp -------GGTTCSEEEEESCCCC-----CCC-GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEE
T ss_pred -------ccCCCCEEECCCCccc-----cCc-HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECc
Confidence 3344445555554422 222 456666777777777766665555544332222335567788888888
Q ss_pred ccc-CCCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceecccc
Q 045150 699 GRM-TTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAV 777 (841)
Q Consensus 699 ~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 777 (841)
+|. ..+|.++..+ ++|+.|+|++|.+++ .++.++.+++|+.|+|++|.+.+.. +.....+++|+.|++++|
T Consensus 192 ~n~l~~lp~~l~~l-~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~------p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 192 WTGIRSLPASIANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNY------PPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp EECCCCCCGGGGGC-TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBC------CCCTTCCCCCCEEECTTC
T ss_pred CCCcCcchHhhcCC-CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhh------HHHhcCCCCCCEEECCCC
Confidence 864 4588888777 999999999999875 4557899999999999887665422 223457899999999998
Q ss_pred ccCceEEEEccCccccccccccccccCCC-CCCcccccc------CCchhhhhhc
Q 045150 778 EVGIVEWQVEERAMPMLRGLKIPSDIPNL-NIPERLRSI------PLPAVWEFDE 825 (841)
Q Consensus 778 ~~~l~~~~~~~~~~p~L~~L~l~~~c~~L-~lp~~l~~l------~~~~~~~~~~ 825 (841)
. .+..+|.....+++|++|+|+ +|+.+ .+|.++.++ .+|..+.+.+
T Consensus 264 ~-~~~~~p~~~~~l~~L~~L~L~-~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 264 S-NLLTLPLDIHRLTQLEKLDLR-GCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp T-TCCBCCTTGGGCTTCCEEECT-TCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred C-chhhcchhhhcCCCCCEEeCC-CCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 8 677777777889999999999 99888 999988877 6665555444
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=3.3e-20 Score=196.76 Aligned_cols=242 Identities=15% Similarity=0.098 Sum_probs=184.1
Q ss_pred ccceEeeeeecCCCe---eeecc-CCCceeeEEEee-cccccccccchhHHhccCceeeEEEeecCCcccccccccccch
Q 045150 460 SSCRRQAIYSETPSF---FWLHH-SNSLSRSLLFFN-ENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHN 534 (841)
Q Consensus 460 ~~~r~l~i~~~~~~~---~~~~~-~~~~lr~L~l~~-~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p 534 (841)
..++++.+..+.... ++... .+++|+.|.+.+ +... ...+..|.++++|++|+|++|. +.+ ..|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~------l~~-~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTN------VSG-AIP 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEEC------CEE-ECC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc----ccCChhHhcCCCCCEEECcCCe------eCC-cCC
Confidence 568888888666553 33333 889999999985 5543 2456678999999999999999 765 788
Q ss_pred hhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-Cccc-ccCccccccccccceecccccccCCcccccccccc
Q 045150 535 KKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIV-QLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLK 612 (841)
Q Consensus 535 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~-~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~ 612 (841)
..++++++|++|+|++|.....+|..+.++++|++|+++ |.+. .+|..+..++ ++|+.|+
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~------------------~~L~~L~ 180 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS------------------KLFTSMT 180 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC------------------TTCCEEE
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh------------------hcCcEEE
Confidence 899999999999999994334899999999999999999 6666 6777765544 1555566
Q ss_pred ccccc--chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCc
Q 045150 613 YVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQ 690 (841)
Q Consensus 613 l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 690 (841)
+.+|. +..+..+..++ |+.|++++|... ...+..+..+++|+.|++++|.+.+..| .+..++
T Consensus 181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------~~~~l~ 244 (313)
T 1ogq_A 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLE-----GDASVLFGSDKNTQKIHLAKNSLAFDLG----------KVGLSK 244 (313)
T ss_dssp CCSSEEEEECCGGGGGCC-CSEEECCSSEEE-----ECCGGGCCTTSCCSEEECCSSEECCBGG----------GCCCCT
T ss_pred CcCCeeeccCChHHhCCc-ccEEECcCCccc-----CcCCHHHhcCCCCCEEECCCCceeeecC----------cccccC
Confidence 66665 35566677776 888888887632 1122667788999999999886543222 244567
Q ss_pred ccceeEeccccC--CCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEeccc
Q 045150 691 RLVDLRLTGRMT--TLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYR 748 (841)
Q Consensus 691 ~L~~L~L~~~~~--~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~ 748 (841)
+|+.|++++|.. .+|.++..+ ++|+.|+|++|.+++..|.. +.+++|+.|++++|.
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQL-KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGC-TTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCCEEECcCCcccCcCChHHhcC-cCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 899999998753 488888887 99999999999987665544 889999999998873
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=3.6e-20 Score=214.70 Aligned_cols=322 Identities=17% Similarity=0.118 Sum_probs=198.4
Q ss_pred ccceEeeeeecCCCeeeecc--CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchh-h
Q 045150 460 SSCRRQAIYSETPSFFWLHH--SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNK-K 536 (841)
Q Consensus 460 ~~~r~l~i~~~~~~~~~~~~--~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~-~ 536 (841)
..++++.+..+....++... .+++|+.|.+.++.... ..+..|.++++|++|++++|. ++ .++. .
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~------l~--~l~~~~ 119 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETN------LA--SLENFP 119 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTSC------CC--CSTTCS
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc----cCHhhhcCccccccccccccc------cc--cCCCcc
Confidence 45677777655555554332 67788888887776532 334567777777777777777 65 4443 4
Q ss_pred ccccCcceeeecCCCcCcc--ccCcccCCCCCCCeeecC-CcccccC-cccccc--------------------------
Q 045150 537 LGKLIHLKYLGIRGTTFIR--DFPSSIFNLPGLQTLDLS-RCIVQLP-PETDMM-------------------------- 586 (841)
Q Consensus 537 i~~L~~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~L~-~~~~~lp-~~~~~L-------------------------- 586 (841)
++++++|++|++++| .+. .+|..++++++|++|+++ +.+..++ ..+..+
T Consensus 120 ~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~ 198 (570)
T 2z63_A 120 IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (570)
T ss_dssp CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT
T ss_pred ccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhc
Confidence 777777777777777 444 357777777777777777 5443332 122222
Q ss_pred --------------------------------------------------------------------------------
Q 045150 587 -------------------------------------------------------------------------------- 586 (841)
Q Consensus 587 -------------------------------------------------------------------------------- 586 (841)
T Consensus 199 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~ 278 (570)
T 2z63_A 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278 (570)
T ss_dssp TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT
T ss_pred cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhh
Confidence
Q ss_pred ---ccccceec---cc-ccccCCccccccccccccccc-c--------------------hhccccccccCCCceEEecc
Q 045150 587 ---RELRHLIG---KL-IGTLPIENLTNLQTLKYVRCK-S--------------------WIRVNTAKLVNLRELHIVGG 638 (841)
Q Consensus 587 ---~~L~~L~~---~~-~~~~~i~~l~~L~~L~l~~~~-~--------------------~~~~~l~~l~~L~~L~l~~~ 638 (841)
++|++|.. .. ..+..+..+ +|+.|++.+|. . ........+++|+.|++++|
T Consensus 279 ~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n 357 (570)
T 2z63_A 279 NCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357 (570)
T ss_dssp GGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSS
T ss_pred cCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCC
Confidence 22232211 00 011113333 45555544443 1 11111145667777777666
Q ss_pred CCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccc----------------cCCCCCCCcccceeEeccccC
Q 045150 639 DGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFA----------------SLQPLSHCQRLVDLRLTGRMT 702 (841)
Q Consensus 639 ~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~----------------~l~~l~~~~~L~~L~L~~~~~ 702 (841)
..... .... ..+..+++|+.|++++|.+.+..+. +..++ ....+..+++|+.|++++|..
T Consensus 358 ~l~~~--~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 433 (570)
T 2z63_A 358 GLSFK--GCCS-QSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433 (570)
T ss_dssp CCBEE--EEEE-HHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred ccCcc--cccc-ccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence 53311 1112 5667777788887777755432211 11111 112356788999999999743
Q ss_pred C--CCccccccCCCccEEEEEeccCC-CCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceecccccc
Q 045150 703 T--LPKDMHVLLPNLECLSLKVVLPE-ENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEV 779 (841)
Q Consensus 703 ~--~p~~~~~l~~~L~~L~L~~~~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~ 779 (841)
. .|..+..+ ++|+.|+|++|.+. +..+..++.+++|+.|+|++|++++... .....+++|++|++++|.
T Consensus 434 ~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~- 505 (570)
T 2z63_A 434 RVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP------TAFNSLSSLQVLNMASNQ- 505 (570)
T ss_dssp EECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECCSSC-
T ss_pred cccchhhhhcC-CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh------hhhhcccCCCEEeCCCCc-
Confidence 2 56666666 99999999999886 3456788999999999999987764321 123568999999999997
Q ss_pred CceEEEEc-cCccccccccccccccCCC-CCC
Q 045150 780 GIVEWQVE-ERAMPMLRGLKIPSDIPNL-NIP 809 (841)
Q Consensus 780 ~l~~~~~~-~~~~p~L~~L~l~~~c~~L-~lp 809 (841)
++.++.. ...+++|+.|+++ +|+-- ..|
T Consensus 506 -l~~~~~~~~~~l~~L~~L~l~-~N~~~~~~~ 535 (570)
T 2z63_A 506 -LKSVPDGIFDRLTSLQKIWLH-TNPWDCSCP 535 (570)
T ss_dssp -CSCCCTTTTTTCTTCCEEECC-SSCBCCCTT
T ss_pred -CCCCCHHHhhcccCCcEEEec-CCcccCCCc
Confidence 8877543 4678999999999 77643 443
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=2.7e-19 Score=211.78 Aligned_cols=325 Identities=18% Similarity=0.132 Sum_probs=198.2
Q ss_pred cCccceEeeeeecCCCeeeecc--CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchh
Q 045150 458 VQSSCRRQAIYSETPSFFWLHH--SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNK 535 (841)
Q Consensus 458 ~~~~~r~l~i~~~~~~~~~~~~--~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~ 535 (841)
.+..++++.+..+....++... .+++|++|.+.++... ...+..|.++++|++|+|++|. ++ .+|.
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~------l~--~l~~ 90 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHNE------LS--QLSD 90 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSSC------CC--CCCT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC----ccCHHHHhcccCcCEEECCCCc------cC--ccCh
Confidence 4567888888866666655433 7889999999887663 2456778899999999999998 77 5665
Q ss_pred -hccccCcceeeecCCCcCccccC-cccCCCCCCCeeecC-Cccccc-Cccccccccccceecc---cccccC----Ccc
Q 045150 536 -KLGKLIHLKYLGIRGTTFIRDFP-SSIFNLPGLQTLDLS-RCIVQL-PPETDMMRELRHLIGK---LIGTLP----IEN 604 (841)
Q Consensus 536 -~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~-~~~~~l-p~~~~~L~~L~~L~~~---~~~~~~----i~~ 604 (841)
.|+++++|++|+|++| .+..+| ..++++++|++|+++ |.+... |..+.++++|++|... .....+ ...
T Consensus 91 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred hhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 5889999999999999 566665 678899999999999 666654 4567888999988432 221111 234
Q ss_pred ccccccccccccc--chhccccccc---------------------------cCCCceEEeccCCCCcCcccccHHHHhc
Q 045150 605 LTNLQTLKYVRCK--SWIRVNTAKL---------------------------VNLRELHIVGGDGQSMGEMEFSFESIAK 655 (841)
Q Consensus 605 l~~L~~L~l~~~~--~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~~g~~~~~~~~l~~ 655 (841)
+++|+.|++.+|. ...+..+..+ ++|+.|++++|.... ..+..+..
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~-----~~~~~~~~ 244 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-----TSNTTFLG 244 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE-----ECTTTTGG
T ss_pred cccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc-----cChhHhhc
Confidence 5778888877765 2223333333 334444444433110 00122333
Q ss_pred cC--CcceEEeeecCCCccCCCCCcccccC---------------CCCCCCcccceeEeccccC-------CCCc----c
Q 045150 656 LK--NLQFLSVNLSDGTVVLPQSSNAFASL---------------QPLSHCQRLVDLRLTGRMT-------TLPK----D 707 (841)
Q Consensus 656 l~--~L~~L~l~~~~~~~~~~~~~~~~~~l---------------~~l~~~~~L~~L~L~~~~~-------~~p~----~ 707 (841)
++ +|+.|++++|.+.+..|..+..++.+ ..+..+++|+.|+++++.. .+|. .
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 32 35555555555444333322222111 1244566777777765421 2332 3
Q ss_pred ccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCcccc-----------ce-----------EEcCCC
Q 045150 708 MHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEK-----------KL-----------SCRAEG 765 (841)
Q Consensus 708 ~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~-----------~~-----------~~~~~~ 765 (841)
+..+ ++|+.|++++|.+.+..+..+.++++|++|++++|.+........ .+ ......
T Consensus 325 ~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 325 FQWL-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTC-TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred cccC-CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 3343 888888998888887777778888889988888775432111000 00 011234
Q ss_pred cccccceeccccccCceE-EE-EccCccccccccccccccC
Q 045150 766 FPLLEILLLDAVEVGIVE-WQ-VEERAMPMLRGLKIPSDIP 804 (841)
Q Consensus 766 f~~L~~L~l~~~~~~l~~-~~-~~~~~~p~L~~L~l~~~c~ 804 (841)
+++|+.|++++|. +.. ++ .....+++|++|+++ +|.
T Consensus 404 l~~L~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~Ls-~n~ 441 (680)
T 1ziw_A 404 LGHLEVLDLGLNE--IGQELTGQEWRGLENIFEIYLS-YNK 441 (680)
T ss_dssp CTTCCEEECCSSC--CEEECCSGGGTTCTTCCEEECC-SCS
T ss_pred CCCCCEEeCCCCc--CccccCcccccCcccccEEecC-CCC
Confidence 5667777777665 443 22 223456777777777 554
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=4.4e-19 Score=209.98 Aligned_cols=301 Identities=18% Similarity=0.149 Sum_probs=153.6
Q ss_pred ceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCcc------c
Q 045150 483 LSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIR------D 556 (841)
Q Consensus 483 ~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~------~ 556 (841)
+++.|.+.++.... ..+..|..+++|++|++++|. +.+ ..|..+..+++|++|++++| ... .
T Consensus 249 ~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~------l~~-~~~~~~~~l~~L~~L~L~~~-~~~~~~~~~~ 316 (680)
T 1ziw_A 249 NLTMLDLSYNNLNV----VGNDSFAWLPQLEYFFLEYNN------IQH-LFSHSLHGLFNVRYLNLKRS-FTKQSISLAS 316 (680)
T ss_dssp CCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSCC------BSE-ECTTTTTTCTTCCEEECTTC-BCCC------
T ss_pred CCCEEECCCCCcCc----cCcccccCcccccEeeCCCCc------cCc-cChhhhcCCCCccEEeccch-hhhccccccc
Confidence 36666666655431 333455666667777777666 543 44556666666666666655 221 3
Q ss_pred cCc----ccCCCCCCCeeecC-CcccccCc-cccccccccceecccc-------cccCCcc--ccccccccccccc--ch
Q 045150 557 FPS----SIFNLPGLQTLDLS-RCIVQLPP-ETDMMRELRHLIGKLI-------GTLPIEN--LTNLQTLKYVRCK--SW 619 (841)
Q Consensus 557 lp~----~i~~L~~L~~L~L~-~~~~~lp~-~~~~L~~L~~L~~~~~-------~~~~i~~--l~~L~~L~l~~~~--~~ 619 (841)
+|. .+..+++|++|+++ +.+..++. .+..+++|++|..... ....+.. .++|+.|++.+|. ..
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 332 45566666666666 55554433 4556666666632110 0001111 1355556555555 23
Q ss_pred hccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccc-----------------c
Q 045150 620 IRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFA-----------------S 682 (841)
Q Consensus 620 ~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-----------------~ 682 (841)
.+..+..+++|+.|++++|... . .+....+..+++|+.|++++|.+....+..+..++ .
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~---~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 472 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIG---Q-ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCE---E-ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred ChhhhhCCCCCCEEeCCCCcCc---c-ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC
Confidence 3445555666666666555422 0 01113445555666666665543322221111100 0
Q ss_pred CCCCCCCcccceeEecccc-CCCCcc-ccccCCCccEEEEEeccCCCC--------ChhhhhhcccCCeEEEecccCCCC
Q 045150 683 LQPLSHCQRLVDLRLTGRM-TTLPKD-MHVLLPNLECLSLKVVLPEEN--------PMPALEMLSNLTILDLNFYRDSGD 752 (841)
Q Consensus 683 l~~l~~~~~L~~L~L~~~~-~~~p~~-~~~l~~~L~~L~L~~~~l~~~--------~~~~l~~l~~L~~L~L~~N~l~~~ 752 (841)
-..+..+++|+.|++++|. ..+|.. +..+ ++|+.|+|++|.++.. +...++++++|+.|+|++|+++..
T Consensus 473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred CcccccCCCCCEEECCCCCCCcCChhhhccc-cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 0123445566666666643 223332 3333 6666666666655432 112255666666666666655432
Q ss_pred CccccceEEcCCCcccccceeccccccCceEEEEcc-CccccccccccccccCCC-CCCc
Q 045150 753 PYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEE-RAMPMLRGLKIPSDIPNL-NIPE 810 (841)
Q Consensus 753 ~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~-~~~p~L~~L~l~~~c~~L-~lp~ 810 (841)
+. .....+++|+.|++++|. ++.++... ..+++|+.|+++ +| ++ .+|.
T Consensus 552 ~~------~~~~~l~~L~~L~Ls~N~--l~~l~~~~~~~l~~L~~L~L~-~N-~l~~~~~ 601 (680)
T 1ziw_A 552 PV------EVFKDLFELKIIDLGLNN--LNTLPASVFNNQVSLKSLNLQ-KN-LITSVEK 601 (680)
T ss_dssp CT------TTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECT-TS-CCCBCCH
T ss_pred CH------HHcccccCcceeECCCCC--CCcCCHhHhCCCCCCCEEECC-CC-cCCccCh
Confidence 21 012456777777777775 76665432 456778888887 55 55 5543
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=8.5e-19 Score=187.78 Aligned_cols=259 Identities=20% Similarity=0.195 Sum_probs=196.0
Q ss_pred ceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCc-ccCCCCCCCeeecC-Cccccc-Ccccccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPS-SIFNLPGLQTLDLS-RCIVQL-PPETDMM 586 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~-~~~~~l-p~~~~~L 586 (841)
.+|++++++++. ++ .+|..+. ++|++|+|++| .+..+|. .++++++|++|+++ +.+..+ |..+.++
T Consensus 31 c~l~~l~~~~~~------l~--~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (330)
T 1xku_A 31 CHLRVVQCSDLG------LE--KVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99 (330)
T ss_dssp EETTEEECTTSC------CC--SCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CCCeEEEecCCC------cc--ccCccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence 478999999998 87 7886654 68999999999 6777765 79999999999999 777776 7789999
Q ss_pred ccccceeccc--ccccCCccccccccccccccc--chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceE
Q 045150 587 RELRHLIGKL--IGTLPIENLTNLQTLKYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFL 662 (841)
Q Consensus 587 ~~L~~L~~~~--~~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L 662 (841)
++|++|.... ....+..-.++|++|++.++. ...+..+..+++|+.|++++|.....+ .....+..+++|+.|
T Consensus 100 ~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG---IENGAFQGMKKLSYI 176 (330)
T ss_dssp TTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG---BCTTGGGGCTTCCEE
T ss_pred CCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC---cChhhccCCCCcCEE
Confidence 9999995421 222232333789999999887 334456889999999999988754221 222678889999999
Q ss_pred EeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC--CCccccccCCCccEEEEEeccCCCCChhhhhhcccCC
Q 045150 663 SVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT--LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLT 740 (841)
Q Consensus 663 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 740 (841)
++++|.+.. .|. ...++|+.|++++|... .|..+..+ ++|+.|+|++|.+++..+..++.+++|+
T Consensus 177 ~l~~n~l~~-l~~-----------~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 243 (330)
T 1xku_A 177 RIADTNITT-IPQ-----------GLPPSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLR 243 (330)
T ss_dssp ECCSSCCCS-CCS-----------SCCTTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred ECCCCcccc-CCc-----------cccccCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCceeChhhccCCCCCC
Confidence 999986543 111 11268999999987533 45667666 9999999999999877777899999999
Q ss_pred eEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEccC-------ccccccccccccccCC
Q 045150 741 ILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEER-------AMPMLRGLKIPSDIPN 805 (841)
Q Consensus 741 ~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~-------~~p~L~~L~l~~~c~~ 805 (841)
.|+|++|.++..+ .....+++|++|++++|. ++.++...- ..+.|+.|++. ++|-
T Consensus 244 ~L~L~~N~l~~lp-------~~l~~l~~L~~L~l~~N~--i~~~~~~~f~~~~~~~~~~~l~~l~l~-~N~~ 305 (330)
T 1xku_A 244 ELHLNNNKLVKVP-------GGLADHKYIQVVYLHNNN--ISAIGSNDFCPPGYNTKKASYSGVSLF-SNPV 305 (330)
T ss_dssp EEECCSSCCSSCC-------TTTTTCSSCCEEECCSSC--CCCCCTTSSSCSSCCTTSCCCSEEECC-SSSS
T ss_pred EEECCCCcCccCC-------hhhccCCCcCEEECCCCc--CCccChhhcCCcccccccccccceEee-cCcc
Confidence 9999999776432 123568999999999997 887753221 24778888998 6663
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=4.4e-19 Score=191.93 Aligned_cols=247 Identities=15% Similarity=0.090 Sum_probs=168.4
Q ss_pred CCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcc
Q 045150 481 NSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSS 560 (841)
Q Consensus 481 ~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~ 560 (841)
.++++.|.+.++.... .....|.++++|++|++++|. +++ ..|..++++++|++|+|++| .+..+|..
T Consensus 51 ~~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~------l~~-~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 118 (353)
T 2z80_A 51 TEAVKSLDLSNNRITY----ISNSDLQRCVNLQALVLTSNG------INT-IEEDSFSSLGSLEHLDLSYN-YLSNLSSS 118 (353)
T ss_dssp CTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSC------CCE-ECTTTTTTCTTCCEEECCSS-CCSSCCHH
T ss_pred cccCcEEECCCCcCcc----cCHHHhccCCCCCEEECCCCc------cCc-cCHhhcCCCCCCCEEECCCC-cCCcCCHh
Confidence 3578888888877642 344467889999999999998 773 34567888999999999998 67777766
Q ss_pred -cCCCCCCCeeecC-CcccccCc--cccccccccceecc----cc--cccCCccccccccccccccc--chhcccccccc
Q 045150 561 -IFNLPGLQTLDLS-RCIVQLPP--ETDMMRELRHLIGK----LI--GTLPIENLTNLQTLKYVRCK--SWIRVNTAKLV 628 (841)
Q Consensus 561 -i~~L~~L~~L~L~-~~~~~lp~--~~~~L~~L~~L~~~----~~--~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~ 628 (841)
++++++|++|+++ +.+..+|. .+.++++|++|... .. .+..++.+++|++|++.+|. ...+..+..++
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 198 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence 7889999999999 77777876 67788888888431 11 12337788888888888887 44467788888
Q ss_pred CCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecccc------C
Q 045150 629 NLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM------T 702 (841)
Q Consensus 629 ~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~------~ 702 (841)
+|++|++++|... .+....+..+++|+.|++++|.+.+..+..+ .....++.++.+++.++. .
T Consensus 199 ~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l------~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 199 NVSHLILHMKQHI-----LLLEIFVDVTSSVECLELRDTDLDTFHFSEL------STGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp EEEEEEEECSCST-----THHHHHHHHTTTEEEEEEESCBCTTCCCC------------CCCCCCEEEEESCBCCHHHHH
T ss_pred cCCeecCCCCccc-----cchhhhhhhcccccEEECCCCcccccccccc------ccccccchhhccccccccccCcchh
Confidence 8888888887632 2221345567888889988886655332221 112223344555554421 1
Q ss_pred CCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCC
Q 045150 703 TLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSG 751 (841)
Q Consensus 703 ~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 751 (841)
.+|.++..+ ++|+.|+|++|.++..+...++.+++|+.|+|++|.+++
T Consensus 268 ~l~~~l~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 268 QVMKLLNQI-SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHHTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhHHHHhcc-cCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 255566665 777777777777765444445777777777777765543
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=3.2e-18 Score=191.70 Aligned_cols=214 Identities=19% Similarity=0.196 Sum_probs=104.3
Q ss_pred eeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCcccc-CcccCCCCCCCeeecC-CcccccCcc-ccccc
Q 045150 511 LLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDF-PSSIFNLPGLQTLDLS-RCIVQLPPE-TDMMR 587 (841)
Q Consensus 511 ~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~-~~~~~lp~~-~~~L~ 587 (841)
+|++|+|++|. ++. ..|..|.++++|++|+|++| .+..+ |..+.++++|++|+|+ |.+..+|.. +..++
T Consensus 76 ~l~~L~L~~n~------i~~-~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 76 NTRYLNLMENN------IQM-IQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147 (452)
T ss_dssp TCSEEECCSSC------CCE-ECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred CccEEECcCCc------Cce-ECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccC
Confidence 44555555554 442 22344455555555555555 33332 2344455555555555 444444432 22333
Q ss_pred cccceec---ccc--cccCCccccccccccccccc--ch-hccccccccCCCceEEeccCCCCcCcccccHHHHhccCCc
Q 045150 588 ELRHLIG---KLI--GTLPIENLTNLQTLKYVRCK--SW-IRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNL 659 (841)
Q Consensus 588 ~L~~L~~---~~~--~~~~i~~l~~L~~L~l~~~~--~~-~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L 659 (841)
+|++|.. ... ....+..+++|+.|++.+++ .. ....+..+++|+.|++++|..... ..+..+++|
T Consensus 148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~l~~L 220 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-------PNLTPLVGL 220 (452)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-------CCCTTCTTC
T ss_pred CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-------ccccccccc
Confidence 3333311 000 00114455555555555543 11 222456666666666666653311 234556666
Q ss_pred ceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC--CCccccccCCCccEEEEEeccCCCCChhhhhhcc
Q 045150 660 QFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT--LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLS 737 (841)
Q Consensus 660 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~ 737 (841)
+.|+|++|.+.+..|. .+..+++|+.|++++|... .|..+..+ ++|+.|+|++|.++..++..+..++
T Consensus 221 ~~L~Ls~N~l~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 221 EELEMSGNHFPEIRPG---------SFHGLSSLKKLWVMNSQVSLIERNAFDGL-ASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp CEEECTTSCCSEECGG---------GGTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred cEEECcCCcCcccCcc---------cccCccCCCEEEeCCCcCceECHHHhcCC-CCCCEEECCCCcCCccChHHhcccc
Confidence 6666666654432221 2334556666666665322 23344444 6666666666666655555566666
Q ss_pred cCCeEEEecccC
Q 045150 738 NLTILDLNFYRD 749 (841)
Q Consensus 738 ~L~~L~L~~N~l 749 (841)
+|+.|+|++|.+
T Consensus 291 ~L~~L~L~~Np~ 302 (452)
T 3zyi_A 291 YLVELHLHHNPW 302 (452)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEccCCCc
Confidence 666666666544
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=5.8e-18 Score=181.43 Aligned_cols=259 Identities=19% Similarity=0.205 Sum_probs=192.2
Q ss_pred ceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCcccc-CcccCCCCCCCeeecC-Cccccc-Ccccccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDF-PSSIFNLPGLQTLDLS-RCIVQL-PPETDMM 586 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~-~~~~~l-p~~~~~L 586 (841)
.+|++++++++. ++ .+|..+. ++|++|+|++| .+..+ |..+.++++|++|+++ |.+..+ |..+.++
T Consensus 33 c~l~~l~~~~~~------l~--~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 33 CHLRVVQCSDLG------LK--AVPKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101 (332)
T ss_dssp EETTEEECCSSC------CS--SCCSCCC--TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred ccCCEEECCCCC------cc--ccCCCCC--CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence 378999999998 87 7887664 79999999999 66666 4579999999999999 777776 6688999
Q ss_pred ccccceeccc--ccccCCccccccccccccccc-chh-ccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceE
Q 045150 587 RELRHLIGKL--IGTLPIENLTNLQTLKYVRCK-SWI-RVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFL 662 (841)
Q Consensus 587 ~~L~~L~~~~--~~~~~i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L 662 (841)
++|++|.... ....+..-.++|++|++.++. ... +..+..+++|+.|++++|.....+..+ ..+..+ +|+.|
T Consensus 102 ~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~l-~L~~L 177 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP---GAFDGL-KLNYL 177 (332)
T ss_dssp TTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT---TSSCSC-CCSCC
T ss_pred CCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc---ccccCC-ccCEE
Confidence 9999995421 122222223789999999887 333 345888999999999988754211111 455566 89999
Q ss_pred EeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccC-CCC-ccccccCCCccEEEEEeccCCCCChhhhhhcccCC
Q 045150 663 SVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMT-TLP-KDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLT 740 (841)
Q Consensus 663 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~-~~p-~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 740 (841)
++++|.+.. .|.. -.++|+.|++++|.. .++ ..+..+ ++|+.|+|++|.+....+..++.+++|+
T Consensus 178 ~l~~n~l~~-l~~~-----------~~~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 244 (332)
T 2ft3_A 178 RISEAKLTG-IPKD-----------LPETLNELHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLR 244 (332)
T ss_dssp BCCSSBCSS-CCSS-----------SCSSCSCCBCCSSCCCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCC
T ss_pred ECcCCCCCc-cCcc-----------ccCCCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCC
Confidence 999986543 1111 125799999998743 343 556666 9999999999999887777899999999
Q ss_pred eEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEccC-------ccccccccccccccCCC
Q 045150 741 ILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEER-------AMPMLRGLKIPSDIPNL 806 (841)
Q Consensus 741 ~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~-------~~p~L~~L~l~~~c~~L 806 (841)
.|+|++|+++..+. ....+++|+.|++++|. ++.++...- .+++|+.|++. ++|-.
T Consensus 245 ~L~L~~N~l~~lp~-------~l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~~~~~~~l~~L~l~-~N~~~ 307 (332)
T 2ft3_A 245 ELHLDNNKLSRVPA-------GLPDLKLLQVVYLHTNN--ITKVGVNDFCPVGFGVKRAYYNGISLF-NNPVP 307 (332)
T ss_dssp EEECCSSCCCBCCT-------TGGGCTTCCEEECCSSC--CCBCCTTSSSCSSCCSSSCCBSEEECC-SSSSC
T ss_pred EEECCCCcCeecCh-------hhhcCccCCEEECCCCC--CCccChhHccccccccccccccceEee-cCccc
Confidence 99999987764321 23468899999999987 887754311 25778999999 87744
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=8.9e-18 Score=197.25 Aligned_cols=123 Identities=15% Similarity=0.096 Sum_probs=93.4
Q ss_pred ccCccceEeeeeecCCCeeeecc--CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccch
Q 045150 457 SVQSSCRRQAIYSETPSFFWLHH--SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHN 534 (841)
Q Consensus 457 ~~~~~~r~l~i~~~~~~~~~~~~--~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p 534 (841)
..|..++++.+..+....++... .+++|+.|.+.++.... ..+..|.++++|++|+|++|. ++ .+|
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~----i~~~~f~~L~~L~~L~Ls~N~------l~--~l~ 116 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNP------IQ--SLA 116 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCC------CC--EEC
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC----cChhHhcCCCCCCEEEccCCc------CC--CCC
Confidence 45667888888877777766443 78889999998887642 445678888899999999988 77 555
Q ss_pred -hhccccCcceeeecCCCcCccccCc-ccCCCCCCCeeecC-Cccc--ccCccccccccccce
Q 045150 535 -KKLGKLIHLKYLGIRGTTFIRDFPS-SIFNLPGLQTLDLS-RCIV--QLPPETDMMRELRHL 592 (841)
Q Consensus 535 -~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~-~~~~--~lp~~~~~L~~L~~L 592 (841)
..|.+|++|++|+|++| .+..+|. .+++|++|++|+++ +.+. .+|..+..+++|++|
T Consensus 117 ~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp GGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred HHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 45788888999999888 6666664 57888888888888 5554 356777778888777
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=2e-19 Score=191.22 Aligned_cols=246 Identities=14% Similarity=0.101 Sum_probs=148.1
Q ss_pred chhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-Cccccc
Q 045150 501 DLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQL 579 (841)
Q Consensus 501 ~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~l 579 (841)
.+...+..+++|++|+|++|. ++. ..|..+..+++|++|+|++| .+..+++ +..+++|++|+++ |.+..+
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~------l~~-~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l 95 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNP------LSQ-ISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQEL 95 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSC------CCC-CCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEE
T ss_pred hHHHHhccCCCCCEEECcCCc------cCc-CCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCccccc
Confidence 445667788899999999998 774 45578999999999999999 6666665 8999999999999 666554
Q ss_pred CccccccccccceecccccccCCccccccccccccccc-chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCC
Q 045150 580 PPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKN 658 (841)
Q Consensus 580 p~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~ 658 (841)
|. +++| ++|++.+|. ...+ ...+++|+.|++++|.... .....+..+++
T Consensus 96 ~~----~~~L-------------------~~L~l~~n~l~~~~--~~~~~~L~~L~l~~N~l~~-----~~~~~~~~l~~ 145 (317)
T 3o53_A 96 LV----GPSI-------------------ETLHAANNNISRVS--CSRGQGKKNIYLANNKITM-----LRDLDEGCRSR 145 (317)
T ss_dssp EE----CTTC-------------------CEEECCSSCCSEEE--ECCCSSCEEEECCSSCCCS-----GGGBCTGGGSS
T ss_pred cC----CCCc-------------------CEEECCCCccCCcC--ccccCCCCEEECCCCCCCC-----ccchhhhccCC
Confidence 42 2444 444444443 1111 1124556666666554321 11134455666
Q ss_pred cceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC-CCccccccCCCccEEEEEeccCCCCChhhhhhcc
Q 045150 659 LQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT-LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLS 737 (841)
Q Consensus 659 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~ 737 (841)
|+.|++++|.+....+.. ....+++|+.|++++|... +|... . +++|+.|+|++|.++.. ++.+..++
T Consensus 146 L~~L~Ls~N~l~~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~-~-l~~L~~L~Ls~N~l~~l-~~~~~~l~ 214 (317)
T 3o53_A 146 VQYLDLKLNEIDTVNFAE--------LAASSDTLEHLNLQYNFIYDVKGQV-V-FAKLKTLDLSSNKLAFM-GPEFQSAA 214 (317)
T ss_dssp EEEEECTTSCCCEEEGGG--------GGGGTTTCCEEECTTSCCCEEECCC-C-CTTCCEEECCSSCCCEE-CGGGGGGT
T ss_pred CCEEECCCCCCCcccHHH--------HhhccCcCCEEECCCCcCccccccc-c-cccCCEEECCCCcCCcc-hhhhcccC
Confidence 666666666443321111 0123455666666665322 33222 2 37777777777777543 33467777
Q ss_pred cCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCce--EEEEccCccccccccccccccCCC
Q 045150 738 NLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIV--EWQVEERAMPMLRGLKIPSDIPNL 806 (841)
Q Consensus 738 ~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~--~~~~~~~~~p~L~~L~l~~~c~~L 806 (841)
+|+.|+|++|.+++.+ .....+++|+.|++++|+ +. .++.....+++|+.|++. +|+.+
T Consensus 215 ~L~~L~L~~N~l~~l~-------~~~~~l~~L~~L~l~~N~--~~~~~~~~~~~~~~~L~~l~l~-~~~~l 275 (317)
T 3o53_A 215 GVTWISLRNNKLVLIE-------KALRFSQNLEHFDLRGNG--FHCGTLRDFFSKNQRVQTVAKQ-TVKKL 275 (317)
T ss_dssp TCSEEECTTSCCCEEC-------TTCCCCTTCCEEECTTCC--CBHHHHHHHHHTCHHHHHHHHH-HHHHH
T ss_pred cccEEECcCCcccchh-------hHhhcCCCCCEEEccCCC--ccCcCHHHHHhccccceEEECC-Cchhc
Confidence 7777777777655321 122456777777777776 44 222234466777777777 66655
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=3e-18 Score=185.34 Aligned_cols=252 Identities=17% Similarity=0.153 Sum_probs=172.1
Q ss_pred ceeeEEEeecCCcccccccccccchh-hccccCcceeeecCCCcCcccc-CcccCCCCCCCeeecC-CcccccCcccccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHNK-KLGKLIHLKYLGIRGTTFIRDF-PSSIFNLPGLQTLDLS-RCIVQLPPETDMM 586 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p~-~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~-~~~~~lp~~~~~L 586 (841)
++|++|++++|. ++ .+|. .+.++++|++|+|++| .+..+ |..++++++|++|+++ |.+..+|...
T Consensus 52 ~~L~~L~l~~n~------i~--~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--- 119 (353)
T 2z80_A 52 EAVKSLDLSNNR------IT--YISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW--- 119 (353)
T ss_dssp TTCCEEECTTSC------CC--EECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHH---
T ss_pred ccCcEEECCCCc------Cc--ccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhH---
Confidence 467777777777 66 4443 6777777777777777 45544 4557777777777777 5666665541
Q ss_pred ccccceecccccccCCccccccccccccccc-chhcc--ccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEE
Q 045150 587 RELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SWIRV--NTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLS 663 (841)
Q Consensus 587 ~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~~~~--~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~ 663 (841)
++.+++|++|++.+|. ...+. .+..+++|+.|++++|... ....+..+..+++|+.|+
T Consensus 120 ---------------~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~----~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 120 ---------------FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF----TKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp ---------------HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC----CEECTTTTTTCCEEEEEE
T ss_pred ---------------hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc----cccCHHHccCCCCCCEEE
Confidence 4556677777777776 33333 6888999999999987411 112225677889999999
Q ss_pred eeecCCCccCCCCCcccccCCCCCCCcccceeEeccccC-CCCccccccCCCccEEEEEeccCCCCChhhh---hhcccC
Q 045150 664 VNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMT-TLPKDMHVLLPNLECLSLKVVLPEENPMPAL---EMLSNL 739 (841)
Q Consensus 664 l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l---~~l~~L 739 (841)
+++|.+.+..|. .+..+++|++|++++|.. .+|..+...+++|+.|+|++|.+++..+..+ ..++.+
T Consensus 181 l~~n~l~~~~~~---------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l 251 (353)
T 2z80_A 181 IDASDLQSYEPK---------SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251 (353)
T ss_dssp EEETTCCEECTT---------TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC
T ss_pred CCCCCcCccCHH---------HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchh
Confidence 999976554332 355677899999998743 3555444435999999999999876554433 346778
Q ss_pred CeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEcc-CccccccccccccccCCC
Q 045150 740 TILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEE-RAMPMLRGLKIPSDIPNL 806 (841)
Q Consensus 740 ~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~-~~~p~L~~L~l~~~c~~L 806 (841)
+.++|++|.+++.... .+......+++|+.|++++|. ++.++... ..+++|++|+++ +|+-.
T Consensus 252 ~~l~L~~~~l~~~~l~--~l~~~l~~l~~L~~L~Ls~N~--l~~i~~~~~~~l~~L~~L~L~-~N~~~ 314 (353)
T 2z80_A 252 KKFTFRNVKITDESLF--QVMKLLNQISGLLELEFSRNQ--LKSVPDGIFDRLTSLQKIWLH-TNPWD 314 (353)
T ss_dssp CEEEEESCBCCHHHHH--HHHHHHHTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECC-SSCBC
T ss_pred hccccccccccCcchh--hhHHHHhcccCCCEEECCCCC--CCccCHHHHhcCCCCCEEEee-CCCcc
Confidence 8888888765432211 111223468899999999997 88777654 678999999999 77533
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=4.8e-18 Score=189.53 Aligned_cols=222 Identities=17% Similarity=0.181 Sum_probs=125.6
Q ss_pred CceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCc-c
Q 045150 482 SLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPS-S 560 (841)
Q Consensus 482 ~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~-~ 560 (841)
++++.|.+.++.... .....|.++++|++|+|++|. +.. ..+..|.++++|++|+|++| .+..+|. .
T Consensus 64 ~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~------i~~-i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 131 (440)
T 3zyj_A 64 TNTRLLNLHENQIQI----IKVNSFKHLRHLEILQLSRNH------IRT-IEIGAFNGLANLNTLELFDN-RLTTIPNGA 131 (440)
T ss_dssp TTCSEEECCSCCCCE----ECTTTTSSCSSCCEEECCSSC------CCE-ECGGGGTTCSSCCEEECCSS-CCSSCCTTT
T ss_pred CCCcEEEccCCcCCe----eCHHHhhCCCCCCEEECCCCc------CCc-cChhhccCCccCCEEECCCC-cCCeeCHhH
Confidence 344555555444321 222344555555555555555 442 22244555555555555555 3444433 3
Q ss_pred cCCCCCCCeeecC-CcccccCccccccccccceecccccccCCccccccccccccccc--c-hhccccccccCCCceEEe
Q 045150 561 IFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK--S-WIRVNTAKLVNLRELHIV 636 (841)
Q Consensus 561 i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~--~-~~~~~l~~l~~L~~L~l~ 636 (841)
+..+++|++|+|+ +.+..+|.. .+..+++|++|++.++. . .....+..+++|+.|+++
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~------------------~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSY------------------AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTT------------------TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred hhccccCceeeCCCCcccccCHH------------------HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 4455555555555 333333321 15566666667666644 2 223356777888888887
Q ss_pred ccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC--CCccccccCCC
Q 045150 637 GGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT--LPKDMHVLLPN 714 (841)
Q Consensus 637 ~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~~ 714 (841)
+|..... ..+..+++|+.|+|++|.+....|. .+..+++|+.|++++|... .|..+..+ ++
T Consensus 194 ~n~l~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~ 256 (440)
T 3zyj_A 194 MCNLREI-------PNLTPLIKLDELDLSGNHLSAIRPG---------SFQGLMHLQKLWMIQSQIQVIERNAFDNL-QS 256 (440)
T ss_dssp TSCCSSC-------CCCTTCSSCCEEECTTSCCCEECTT---------TTTTCTTCCEEECTTCCCCEECTTSSTTC-TT
T ss_pred CCcCccc-------cccCCCcccCEEECCCCccCccChh---------hhccCccCCEEECCCCceeEEChhhhcCC-CC
Confidence 7764311 2356677788888887755443322 2445667778888776432 33444444 77
Q ss_pred ccEEEEEeccCCCCChhhhhhcccCCeEEEecccCC
Q 045150 715 LECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDS 750 (841)
Q Consensus 715 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~ 750 (841)
|+.|+|++|.++..++..+..+++|+.|+|++|.+.
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 888888888777666666777788888888777543
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=2.8e-18 Score=181.70 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=17.4
Q ss_pred hccccCcceeeecCCCcCccccCcccCCCCCCCeeecC
Q 045150 536 KLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS 573 (841)
Q Consensus 536 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~ 573 (841)
.+..+++|++|+|++| .+..+|..+..+++|++|+++
T Consensus 73 ~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~ 109 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQ 109 (306)
T ss_dssp HHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECT
T ss_pred ccccccccCEEECCCC-ccccChhhcCCCCCCCEEECC
Confidence 3334444444444444 344444444444444444444
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=7e-18 Score=188.94 Aligned_cols=222 Identities=24% Similarity=0.236 Sum_probs=174.1
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCc
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPS 559 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~ 559 (841)
-.++++.|.+.++.... ..+..|.++++|++|+|++|. ++. ..|..|.++++|++|+|++| .+..+|.
T Consensus 73 ~~~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~------i~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 140 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQM----IQADTFRHLHHLEVLQLGRNS------IRQ-IEVGAFNGLASLNTLELFDN-WLTVIPS 140 (452)
T ss_dssp CCTTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSC------CCE-ECTTTTTTCTTCCEEECCSS-CCSBCCT
T ss_pred CCCCccEEECcCCcCce----ECHHHcCCCCCCCEEECCCCc------cCC-cChhhccCcccCCEEECCCC-cCCccCh
Confidence 34689999999887643 445678999999999999999 873 44578999999999999999 6777765
Q ss_pred c-cCCCCCCCeeecC-CcccccCc-cccccccccceecc---cc---cccCCcccccccccccccccchhccccccccCC
Q 045150 560 S-IFNLPGLQTLDLS-RCIVQLPP-ETDMMRELRHLIGK---LI---GTLPIENLTNLQTLKYVRCKSWIRVNTAKLVNL 630 (841)
Q Consensus 560 ~-i~~L~~L~~L~L~-~~~~~lp~-~~~~L~~L~~L~~~---~~---~~~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L 630 (841)
. +.++++|++|+|+ |.+..+|. .+.++++|++|... .. ....+..+++|+.|++.+|.-.....+..+++|
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 220 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGL 220 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTC
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccc
Confidence 4 8889999999999 77877776 67889999999532 11 222388999999999999984444678999999
Q ss_pred CceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecccc-CCCCcccc
Q 045150 631 RELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPKDMH 709 (841)
Q Consensus 631 ~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~~~~ 709 (841)
+.|++++|... ...+..+.++++|+.|++++|.+....+ ..+..+++|+.|+|++|. ..+|....
T Consensus 221 ~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 221 EELEMSGNHFP-----EIRPGSFHGLSSLKKLWVMNSQVSLIER---------NAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp CEEECTTSCCS-----EECGGGGTTCTTCCEEECTTSCCCEECT---------TTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred cEEECcCCcCc-----ccCcccccCccCCCEEEeCCCcCceECH---------HHhcCCCCCCEEECCCCcCCccChHHh
Confidence 99999998743 2223778899999999999997655433 235667899999999974 44665544
Q ss_pred ccCCCccEEEEEeccCCC
Q 045150 710 VLLPNLECLSLKVVLPEE 727 (841)
Q Consensus 710 ~l~~~L~~L~L~~~~l~~ 727 (841)
..+++|+.|+|++|.+.+
T Consensus 287 ~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TTCTTCCEEECCSSCEEC
T ss_pred ccccCCCEEEccCCCcCC
Confidence 334999999999997654
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=186.71 Aligned_cols=221 Identities=20% Similarity=0.207 Sum_probs=168.1
Q ss_pred ceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccC-cccCCCCCCCeeecC-CcccccCccccccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFP-SSIFNLPGLQTLDLS-RCIVQLPPETDMMR 587 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~ 587 (841)
+++++|+|++|. ++. ..+..|.++++|++|+|++| .+..++ ..+.++++|++|+|+ |.+..+|...
T Consensus 64 ~~l~~L~L~~n~------i~~-~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~---- 131 (440)
T 3zyj_A 64 TNTRLLNLHENQ------IQI-IKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA---- 131 (440)
T ss_dssp TTCSEEECCSCC------CCE-ECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTT----
T ss_pred CCCcEEEccCCc------CCe-eCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHhH----
Confidence 578999999999 773 44578899999999999999 566655 678899999999999 7777776532
Q ss_pred cccceecccccccCCccccccccccccccc--chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEee
Q 045150 588 ELRHLIGKLIGTLPIENLTNLQTLKYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVN 665 (841)
Q Consensus 588 ~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~ 665 (841)
+..+++|++|++.+|. ......+..+++|+.|++.++... ..+....+.++++|+.|+++
T Consensus 132 --------------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l----~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 132 --------------FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL----SYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp --------------SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC----CEECTTTTTTCSSCCEEECT
T ss_pred --------------hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCc----ceeCcchhhcccccCeecCC
Confidence 4555667777777776 233446788999999999875422 12222567889999999999
Q ss_pred ecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC--CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEE
Q 045150 666 LSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT--LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILD 743 (841)
Q Consensus 666 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 743 (841)
+|.+.. +..+..+++|+.|+|++|... .|..+..+ ++|+.|+|++|.++...+..+.++++|+.|+
T Consensus 194 ~n~l~~-----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 194 MCNLRE-----------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp TSCCSS-----------CCCCTTCSSCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred CCcCcc-----------ccccCCCcccCEEECCCCccCccChhhhccC-ccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence 985432 234667789999999997533 45666666 9999999999999887788899999999999
Q ss_pred EecccCCCCCccccceEEcCCCcccccceeccccc
Q 045150 744 LNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVE 778 (841)
Q Consensus 744 L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 778 (841)
|++|++++.... ....+++|+.|++++|+
T Consensus 262 L~~N~l~~~~~~------~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 262 LAHNNLTLLPHD------LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTSCCCCCCTT------TTSSCTTCCEEECCSSC
T ss_pred CCCCCCCccChh------HhccccCCCEEEcCCCC
Confidence 999988754421 12457899999999887
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=1.4e-17 Score=174.20 Aligned_cols=243 Identities=19% Similarity=0.119 Sum_probs=154.8
Q ss_pred CceeeEEEeecCCcccccccccccch-hhccccCcceeeecCCCcCcccc-CcccCCCCCCCeeecC-Cc-cccc-Cccc
Q 045150 509 FLLLRVLEIEESGYFSRMLFDNRLHN-KKLGKLIHLKYLGIRGTTFIRDF-PSSIFNLPGLQTLDLS-RC-IVQL-PPET 583 (841)
Q Consensus 509 ~~~Lr~L~L~~~~~~~~~~l~~~~~p-~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~-~~-~~~l-p~~~ 583 (841)
.+.|++|++++|. ++ .++ ..+..+++|++|+|++| .+..+ |..+.++++|++|+++ +. +..+ |..
T Consensus 31 ~~~l~~L~l~~n~------i~--~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~- 100 (285)
T 1ozn_A 31 PAASQRIFLHGNR------IS--HVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT- 100 (285)
T ss_dssp CTTCSEEECTTSC------CC--EECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT-
T ss_pred CCCceEEEeeCCc------CC--ccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHH-
Confidence 3567888888887 66 343 56777888888888887 45544 6677788888888888 43 5554 233
Q ss_pred cccccccceecccccccCCccccccccccccccc--chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcce
Q 045150 584 DMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQF 661 (841)
Q Consensus 584 ~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~ 661 (841)
+..+++|++|++.++. ...+..+..+++|+.|++++|... .+....+..+++|+.
T Consensus 101 ------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 101 ------------------FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-----ALPDDTFRDLGNLTH 157 (285)
T ss_dssp ------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCE
T ss_pred ------------------hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-----ccCHhHhccCCCccE
Confidence 3445556666666655 223455677788888888877643 122145677888888
Q ss_pred EEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC--CCccccccCCCccEEEEEeccCCCCChhhhhhcccC
Q 045150 662 LSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT--LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNL 739 (841)
Q Consensus 662 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L 739 (841)
|++++|.+....+ ..+..+++|+.|++++|... .|.++..+ ++|+.|+|++|.+++.++..+..+++|
T Consensus 158 L~l~~n~l~~~~~---------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 158 LFLHGNRISSVPE---------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDL-GRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp EECCSSCCCEECT---------TTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred EECCCCcccccCH---------HHhcCccccCEEECCCCcccccCHhHccCc-ccccEeeCCCCcCCcCCHHHcccCccc
Confidence 8888885543221 12455678888888886433 46667666 899999999999887777778999999
Q ss_pred CeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEc--cCcccccccccccccc
Q 045150 740 TILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVE--ERAMPMLRGLKIPSDI 803 (841)
Q Consensus 740 ~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~--~~~~p~L~~L~l~~~c 803 (841)
+.|+|++|.+...+.... .+..|+.+....+. -....|.. ...+..++..++. +|
T Consensus 228 ~~L~l~~N~~~c~~~~~~-------~~~~l~~~~~~~~~-~~c~~p~~l~g~~l~~l~~~~l~-~C 284 (285)
T 1ozn_A 228 QYLRLNDNPWVCDCRARP-------LWAWLQKFRGSSSE-VPCSLPQRLAGRDLKRLAANDLQ-GC 284 (285)
T ss_dssp CEEECCSSCEECSGGGHH-------HHHHHHHCCSEECC-CBEEESGGGTTCBGGGSCGGGSC-CC
T ss_pred CEEeccCCCccCCCCcHH-------HHHHHHhcccccCc-cccCCchHhCCcChhhcCHHHhc-cC
Confidence 999999886653321110 12234444444443 11222221 1235566666666 66
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=6.6e-19 Score=187.27 Aligned_cols=244 Identities=13% Similarity=0.070 Sum_probs=175.3
Q ss_pred ceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccC-cccCCCCCCCeeecC-CcccccCccccccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFP-SSIFNLPGLQTLDLS-RCIVQLPPETDMMR 587 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~ 587 (841)
..++.++++.+. +.. .....+..+++|++|+|++| .+..++ ..+.++++|++|+++ |.+..+++
T Consensus 10 ~~l~i~~ls~~~------l~~-~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------ 75 (317)
T 3o53_A 10 NRYKIEKVTDSS------LKQ-ALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD------ 75 (317)
T ss_dssp TEEEEESCCTTT------HHH-HHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE------
T ss_pred CceeEeeccccc------hhh-hHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh------
Confidence 446777888777 652 33344566889999999999 666665 679999999999999 66654443
Q ss_pred cccceecccccccCCcccccccccccccccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeec
Q 045150 588 ELRHLIGKLIGTLPIENLTNLQTLKYVRCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLS 667 (841)
Q Consensus 588 ~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~ 667 (841)
++.+++|++|++++|. ...+...++|+.|++++|... ... ...+++|+.|++++|
T Consensus 76 --------------~~~l~~L~~L~Ls~n~---l~~l~~~~~L~~L~l~~n~l~---~~~-----~~~~~~L~~L~l~~N 130 (317)
T 3o53_A 76 --------------LESLSTLRTLDLNNNY---VQELLVGPSIETLHAANNNIS---RVS-----CSRGQGKKNIYLANN 130 (317)
T ss_dssp --------------ETTCTTCCEEECCSSE---EEEEEECTTCCEEECCSSCCS---EEE-----ECCCSSCEEEECCSS
T ss_pred --------------hhhcCCCCEEECcCCc---cccccCCCCcCEEECCCCccC---CcC-----ccccCCCCEEECCCC
Confidence 3455667777777665 112334589999999998744 111 123688999999999
Q ss_pred CCCccCCCCCcccccCCCCCCCcccceeEeccccCC--CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEe
Q 045150 668 DGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT--LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLN 745 (841)
Q Consensus 668 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~--~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~ 745 (841)
.+....+. .+..+++|+.|++++|... .|..+...+++|+.|+|++|.++.. +....+++|+.|+|+
T Consensus 131 ~l~~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls 199 (317)
T 3o53_A 131 KITMLRDL---------DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLS 199 (317)
T ss_dssp CCCSGGGB---------CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECC
T ss_pred CCCCccch---------hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECC
Confidence 66543221 2456789999999997543 3444442249999999999998654 344569999999999
Q ss_pred cccCCCCCccccceEEcCCCcccccceeccccccCceEEEEccCccccccccccccccCCC--CCCcccc
Q 045150 746 FYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIPNL--NIPERLR 813 (841)
Q Consensus 746 ~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~~L--~lp~~l~ 813 (841)
+|.+++... ....+++|+.|++++|. ++.++.....+++|+.|+++ +|+-. .+|..+.
T Consensus 200 ~N~l~~l~~-------~~~~l~~L~~L~L~~N~--l~~l~~~~~~l~~L~~L~l~-~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 200 SNKLAFMGP-------EFQSAAGVTWISLRNNK--LVLIEKALRFSQNLEHFDLR-GNGFHCGTLRDFFS 259 (317)
T ss_dssp SSCCCEECG-------GGGGGTTCSEEECTTSC--CCEECTTCCCCTTCCEEECT-TCCCBHHHHHHHHH
T ss_pred CCcCCcchh-------hhcccCcccEEECcCCc--ccchhhHhhcCCCCCEEEcc-CCCccCcCHHHHHh
Confidence 998764321 23468999999999997 99887777789999999999 77644 4444433
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=3.2e-18 Score=181.27 Aligned_cols=220 Identities=20% Similarity=0.179 Sum_probs=133.6
Q ss_pred ceeeEEEeecCCcccccccccccchhh-ccccCcceeeecCCCcCcccc---CcccCCCCCCCeeecC-CcccccCcccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHNKK-LGKLIHLKYLGIRGTTFIRDF---PSSIFNLPGLQTLDLS-RCIVQLPPETD 584 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p~~-i~~L~~L~~L~L~~~~~~~~l---p~~i~~L~~L~~L~L~-~~~~~lp~~~~ 584 (841)
++|++|+|++|. ++ .+|.. +.++++|++|+|++| .+..+ |..+..+++|++|+++ +.+..+|..+.
T Consensus 28 ~~l~~L~L~~n~------l~--~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~ 98 (306)
T 2z66_A 28 SSATRLELESNK------LQ--SLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 98 (306)
T ss_dssp TTCCEEECCSSC------CC--CCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEE
T ss_pred CCCCEEECCCCc------cC--ccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccccChhhcC
Confidence 467777777776 65 45543 566777777777776 44433 4555667777777777 55555554443
Q ss_pred ccccccceecccccccCCccccccccccccccc-chhc--cccccccCCCceEEeccCCCCcCcccccHHHHhccCCcce
Q 045150 585 MMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SWIR--VNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQF 661 (841)
Q Consensus 585 ~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~ 661 (841)
.+++|++|++.++. ...+ ..+..+++|+.|++++|... ...+..+..+++|+.
T Consensus 99 -------------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 99 -------------------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-----VAFNGIFNGLSSLEV 154 (306)
T ss_dssp -------------------TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-----ECSTTTTTTCTTCCE
T ss_pred -------------------CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-----ccchhhcccCcCCCE
Confidence 34555555555555 2222 35677778888888776532 111145667778888
Q ss_pred EEeeecCCCc-cCCCCCcccccCCCCCCCcccceeEeccccC-C-CCccccccCCCccEEEEEeccCCCCChhhhhhccc
Q 045150 662 LSVNLSDGTV-VLPQSSNAFASLQPLSHCQRLVDLRLTGRMT-T-LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSN 738 (841)
Q Consensus 662 L~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~-~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~ 738 (841)
|++++|.+.+ ..| ..+..+++|+.|++++|.. . .|.++..+ ++|+.|+|++|.++...+..+..+++
T Consensus 155 L~l~~n~l~~~~~~---------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 155 LKMAGNSFQENFLP---------DIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp EECTTCEEGGGEEC---------SCCTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred EECCCCccccccch---------hHHhhCcCCCEEECCCCCcCCcCHHHhcCC-CCCCEEECCCCccCccChhhccCccc
Confidence 8887774432 111 2245566777777777633 2 35555555 77777777777776665556777777
Q ss_pred CCeEEEecccCCCCCccccceEEcCCCcc-cccceeccccc
Q 045150 739 LTILDLNFYRDSGDPYHEKKLSCRAEGFP-LLEILLLDAVE 778 (841)
Q Consensus 739 L~~L~L~~N~l~~~~~~~~~~~~~~~~f~-~L~~L~l~~~~ 778 (841)
|+.|+|++|.+++.... ....+| +|++|++++|+
T Consensus 225 L~~L~L~~N~l~~~~~~------~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQ------ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEEECTTSCCCBCSSS------SCCCCCTTCCEEECTTCC
T ss_pred CCEeECCCCCCcccCHH------HHHhhhccCCEEEccCCC
Confidence 77777777766543211 122343 77777777776
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=7.6e-17 Score=179.64 Aligned_cols=181 Identities=14% Similarity=0.076 Sum_probs=129.2
Q ss_pred cCccceEeeeeecCCCeeeeccCCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhc
Q 045150 458 VQSSCRRQAIYSETPSFFWLHHSNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKL 537 (841)
Q Consensus 458 ~~~~~r~l~i~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i 537 (841)
.+..++.+.+..+....++ ...++++.|.+.++.... ++. -.++|++|++++|. ++ .+| .+
T Consensus 89 ~~~~L~~L~l~~n~l~~lp--~~~~~L~~L~l~~n~l~~-----l~~---~~~~L~~L~L~~n~------l~--~lp-~~ 149 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKA-----LSD---LPPLLEYLGVSNNQ------LE--KLP-EL 149 (454)
T ss_dssp CCTTCSEEECCSSCCSSCC--CCCTTCCEEECCSSCCSC-----CCS---CCTTCCEEECCSSC------CS--SCC-CC
T ss_pred CcCCCCEEEccCCcCCccc--cccCCCcEEECCCCccCc-----ccC---CCCCCCEEECcCCC------CC--CCc-cc
Confidence 4567888888765555543 245788999888876532 111 12689999999998 87 677 59
Q ss_pred cccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceecccccccCC-ccccccccccccc
Q 045150 538 GKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPI-ENLTNLQTLKYVR 615 (841)
Q Consensus 538 ~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i-~~l~~L~~L~l~~ 615 (841)
+++++|++|++++| .+..+|..+ .+|++|+++ |.+..+| .+.++++|++|.........+ ...++|++|++.+
T Consensus 150 ~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~ 224 (454)
T 1jl5_A 150 QNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 224 (454)
T ss_dssp TTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCS
T ss_pred CCCCCCCEEECCCC-cCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcC
Confidence 99999999999999 677788654 589999999 7777777 688999999995422111111 1235899999998
Q ss_pred ccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCc
Q 045150 616 CKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTV 671 (841)
Q Consensus 616 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~ 671 (841)
|.-...+.++.+++|+.|++++|.... ++ . .+++|+.|++++|.+.+
T Consensus 225 n~l~~lp~~~~l~~L~~L~l~~N~l~~-----l~-~---~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 225 NILEELPELQNLPFLTTIYADNNLLKT-----LP-D---LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp SCCSSCCCCTTCTTCCEEECCSSCCSS-----CC-S---CCTTCCEEECCSSCCSC
T ss_pred CcCCcccccCCCCCCCEEECCCCcCCc-----cc-c---cccccCEEECCCCcccc
Confidence 872233368899999999999886441 11 1 24789999999986654
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=1.1e-17 Score=186.51 Aligned_cols=225 Identities=16% Similarity=0.135 Sum_probs=102.8
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcc-------------eee
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHL-------------KYL 546 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L-------------~~L 546 (841)
..++++.|.+.++... .++..+.++++|++|++++|. +.+ .+|..++++.+| ++|
T Consensus 9 ~~~~L~~L~l~~n~l~-----~iP~~i~~L~~L~~L~l~~n~------~~~-~~p~~~~~l~~L~~l~l~~c~~~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLT-----EMPVEAENVKSKTEYYNAWSE------WER-NAPPGNGEQREMAVSRLRDCLDRQAHEL 76 (454)
T ss_dssp ------------------------------CCHHHHHHHHHH------HHH-TSCTTSCCCHHHHHHHHHHHHHHTCSEE
T ss_pred ccccchhhhcccCchh-----hCChhHhcccchhhhhccCCc------ccc-cCCcccccchhcchhhhhhhhccCCCEE
Confidence 3455666666665542 344556777777777777776 544 566666666654 677
Q ss_pred ecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceecccccccCCccc-cccccccccccc-chhccc
Q 045150 547 GIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPIENL-TNLQTLKYVRCK-SWIRVN 623 (841)
Q Consensus 547 ~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i~~l-~~L~~L~l~~~~-~~~~~~ 623 (841)
++++| .+..+|.. .++|++|+++ +.+..+|..+ ++|++|.........+..+ ++|++|++.+|. ...+ .
T Consensus 77 ~l~~~-~l~~lp~~---~~~L~~L~l~~n~l~~lp~~~---~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~ 148 (454)
T 1jl5_A 77 ELNNL-GLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-E 148 (454)
T ss_dssp ECTTS-CCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-C
T ss_pred EecCC-ccccCCCC---cCCCCEEEccCCcCCcccccc---CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-c
Confidence 77777 56666652 3567777777 5555566432 4555553322111122222 466667666666 3333 5
Q ss_pred cccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecccc-C
Q 045150 624 TAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-T 702 (841)
Q Consensus 624 l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~ 702 (841)
++.+++|++|++++|.... .+ . ...+|+.|++++|.+.+ .| .+..+++|+.|++++|. .
T Consensus 149 ~~~l~~L~~L~l~~N~l~~---lp---~---~~~~L~~L~L~~n~l~~-l~----------~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK---LP---D---LPPSLEFIAAGNNQLEE-LP----------ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC---CC---C---CCTTCCEEECCSSCCSS-CC----------CCTTCTTCCEEECCSSCCS
T ss_pred cCCCCCCCEEECCCCcCcc---cC---C---CcccccEEECcCCcCCc-Cc----------cccCCCCCCEEECCCCcCC
Confidence 6666777777776665331 11 1 12366666666664332 11 13344455555555442 1
Q ss_pred CCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCC
Q 045150 703 TLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDS 750 (841)
Q Consensus 703 ~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~ 750 (841)
.+|.. +++|+.|++++|.+.. .+ .++.+++|+.|++++|+++
T Consensus 209 ~l~~~----~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 209 KLPDL----PLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp SCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred cCCCC----cCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCC
Confidence 23321 1345555555554432 11 2444555555555544443
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=3.5e-17 Score=187.96 Aligned_cols=259 Identities=19% Similarity=0.106 Sum_probs=188.6
Q ss_pred CceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCccc
Q 045150 482 SLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSI 561 (841)
Q Consensus 482 ~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i 561 (841)
.+++.|.+.++.... ++..+. ++|++|+|++|. ++ .+|. .+++|++|+|++| .+..+|.
T Consensus 40 ~~l~~L~ls~n~L~~-----lp~~l~--~~L~~L~L~~N~------l~--~lp~---~l~~L~~L~Ls~N-~l~~lp~-- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNN------LT--SLPA---LPPELRTLEVSGN-QLTSLPV-- 98 (622)
T ss_dssp HCCCEEECCSSCCSC-----CCSCCC--TTCSEEEECSCC------CS--CCCC---CCTTCCEEEECSC-CCSCCCC--
T ss_pred CCCcEEEecCCCcCc-----cChhhC--CCCcEEEecCCC------CC--CCCC---cCCCCCEEEcCCC-cCCcCCC--
Confidence 357888888877642 222222 789999999998 87 6776 6789999999999 7888887
Q ss_pred CCCCCCCeeecC-CcccccCccccccccccceec---ccccccCCccccccccccccccc-chhccccccccCCCceEEe
Q 045150 562 FNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIG---KLIGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIV 636 (841)
Q Consensus 562 ~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~---~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~ 636 (841)
.+++|++|+++ |.+..+|. .+++|++|.. .... .+ ..+++|++|++++|. ...+. .+++|+.|+++
T Consensus 99 -~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp-~~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~ 169 (622)
T 3g06_A 99 -LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTS-LP-VLPPGLQELSVSDNQLASLPA---LPSELCKLWAY 169 (622)
T ss_dssp -CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSC-CC-CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred -CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCc-CC-CCCCCCCEEECcCCcCCCcCC---ccCCCCEEECC
Confidence 78999999999 77888887 5667777733 2222 11 135889999999887 33332 35688899998
Q ss_pred ccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccC-CCCccccccCCCc
Q 045150 637 GGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMT-TLPKDMHVLLPNL 715 (841)
Q Consensus 637 ~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~~L 715 (841)
+|..... + ..+++|+.|++++|.+.+ ++ ..+++|+.|++++|.. .+|.. +++|
T Consensus 170 ~N~l~~l---~------~~~~~L~~L~Ls~N~l~~--------l~-----~~~~~L~~L~L~~N~l~~l~~~----~~~L 223 (622)
T 3g06_A 170 NNQLTSL---P------MLPSGLQELSVSDNQLAS--------LP-----TLPSELYKLWAYNNRLTSLPAL----PSGL 223 (622)
T ss_dssp SSCCSCC---C------CCCTTCCEEECCSSCCSC--------CC-----CCCTTCCEEECCSSCCSSCCCC----CTTC
T ss_pred CCCCCCC---c------ccCCCCcEEECCCCCCCC--------CC-----CccchhhEEECcCCcccccCCC----CCCC
Confidence 8874421 1 346889999999985542 11 1236799999998743 46642 3889
Q ss_pred cEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEccCcccccc
Q 045150 716 ECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAMPMLR 795 (841)
Q Consensus 716 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~ 795 (841)
+.|+|++|.++..+ ..+++|+.|+|++|.++..+. .+++|+.|++++|. ++.+|.....+++|+
T Consensus 224 ~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----------~~~~L~~L~Ls~N~--L~~lp~~l~~l~~L~ 287 (622)
T 3g06_A 224 KELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----------LPSGLLSLSVYRNQ--LTRLPESLIHLSSET 287 (622)
T ss_dssp CEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSC--CCSCCGGGGGSCTTC
T ss_pred CEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----------ccccCcEEeCCCCC--CCcCCHHHhhccccC
Confidence 99999999987533 567899999999987765431 47899999999997 888877777899999
Q ss_pred ccccccccCCC-CCCcccc
Q 045150 796 GLKIPSDIPNL-NIPERLR 813 (841)
Q Consensus 796 ~L~l~~~c~~L-~lp~~l~ 813 (841)
.|+++ +|+-- ..|..+.
T Consensus 288 ~L~L~-~N~l~~~~~~~l~ 305 (622)
T 3g06_A 288 TVNLE-GNPLSERTLQALR 305 (622)
T ss_dssp EEECC-SCCCCHHHHHHHH
T ss_pred EEEec-CCCCCCcCHHHHH
Confidence 99999 77633 4454443
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=5.1e-17 Score=170.00 Aligned_cols=248 Identities=19% Similarity=0.127 Sum_probs=174.6
Q ss_pred eEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccC-cccCCCCCCCeeecC-Cccccc-Cccccccccc
Q 045150 513 RVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFP-SSIFNLPGLQTLDLS-RCIVQL-PPETDMMREL 589 (841)
Q Consensus 513 r~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~-~~~~~l-p~~~~~L~~L 589 (841)
++++++++. ++ .+|..+ .++|++|+|++| .+..+| ..+.++++|++|+++ +.+..+ |..
T Consensus 14 ~~~~c~~~~------l~--~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~------- 75 (285)
T 1ozn_A 14 VTTSCPQQG------LQ--AVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAA------- 75 (285)
T ss_dssp CEEECCSSC------CS--SCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-------
T ss_pred eEEEcCcCC------cc--cCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhh-------
Confidence 678888887 77 677544 579999999999 677666 568999999999999 666655 333
Q ss_pred cceecccccccCCccccccccccccccc---chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeee
Q 045150 590 RHLIGKLIGTLPIENLTNLQTLKYVRCK---SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNL 666 (841)
Q Consensus 590 ~~L~~~~~~~~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~ 666 (841)
++.+++|++|++.++. ...+..+..+++|++|++++|... ...+..+.++++|+.|++++
T Consensus 76 ------------~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~ 138 (285)
T 1ozn_A 76 ------------FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-----ELGPGLFRGLAALQYLYLQD 138 (285)
T ss_dssp ------------TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-----CCCTTTTTTCTTCCEEECCS
T ss_pred ------------cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC-----EECHhHhhCCcCCCEEECCC
Confidence 4455666667777664 223567888999999999988744 22225678899999999999
Q ss_pred cCCCccCCCCCcccccCCCCCCCcccceeEecccc-CCCCc-cccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEE
Q 045150 667 SDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPK-DMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDL 744 (841)
Q Consensus 667 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L 744 (841)
|.+....+ ..+..+++|+.|++++|. ..+|. .+..+ ++|+.|+|++|.++...+..++.+++|+.|+|
T Consensus 139 n~l~~~~~---------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 139 NALQALPD---------DTFRDLGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp SCCCCCCT---------TTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcccccCH---------hHhccCCCccEEECCCCcccccCHHHhcCc-cccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 96543222 225667889999999874 34554 35555 99999999999998777888999999999999
Q ss_pred ecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEccCccccccccccccccCCC-CCCccccc
Q 045150 745 NFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIPNL-NIPERLRS 814 (841)
Q Consensus 745 ~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~~L-~lp~~l~~ 814 (841)
++|.+++... .....+++|+.|++++|+ +..-......+..|+.+... ...-- ..|..+..
T Consensus 209 ~~n~l~~~~~------~~~~~l~~L~~L~l~~N~--~~c~~~~~~~~~~l~~~~~~-~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 209 FANNLSALPT------EALAPLRALQYLRLNDNP--WVCDCRARPLWAWLQKFRGS-SSEVPCSLPQRLAG 270 (285)
T ss_dssp CSSCCSCCCH------HHHTTCTTCCEEECCSSC--EECSGGGHHHHHHHHHCCSE-ECCCBEEESGGGTT
T ss_pred CCCcCCcCCH------HHcccCcccCEEeccCCC--ccCCCCcHHHHHHHHhcccc-cCccccCCchHhCC
Confidence 9988765331 113468899999999987 43110001123445555555 33222 56665544
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=7.8e-17 Score=181.41 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=73.2
Q ss_pred ccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccc
Q 045150 507 KRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDM 585 (841)
Q Consensus 507 ~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~ 585 (841)
..+++|++|+|++|. +.+ ..|..|+.+++|++|+|++| .+..+++ ++.+++|++|+|+ |.+..+|..
T Consensus 31 ~~~~~L~~L~Ls~n~------l~~-~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~--- 98 (487)
T 3oja_A 31 QSAWNVKELDLSGNP------LSQ-ISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLVG--- 98 (487)
T ss_dssp TTGGGCCEEECCSSC------CCC-CCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEEC---
T ss_pred ccCCCccEEEeeCCc------CCC-CCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCCC---
Confidence 344589999999998 773 44678999999999999999 6665555 8899999999999 666655532
Q ss_pred cccccceeccc--ccccCCccccccccccccccc--chhccccccccCCCceEEeccC
Q 045150 586 MRELRHLIGKL--IGTLPIENLTNLQTLKYVRCK--SWIRVNTAKLVNLRELHIVGGD 639 (841)
Q Consensus 586 L~~L~~L~~~~--~~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~ 639 (841)
++|++|.... ....+...+++|+.|++.+|. ...+..++.+++|+.|++++|.
T Consensus 99 -~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (487)
T 3oja_A 99 -PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (487)
T ss_dssp -TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred -CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC
Confidence 4555552211 111112233445555554444 2223344444455555554443
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=1.6e-16 Score=167.73 Aligned_cols=192 Identities=23% Similarity=0.249 Sum_probs=118.9
Q ss_pred ccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccc
Q 045150 507 KRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDM 585 (841)
Q Consensus 507 ~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~ 585 (841)
..+++|+.|++++|. ++ .+| .+..+++|++|+|++| .+..+|. +.++++|++|+++ |.+..+| .
T Consensus 38 ~~l~~L~~L~l~~~~------i~--~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~--- 102 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG------VT--TIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-A--- 102 (308)
T ss_dssp HHHHTCCEEECTTSC------CC--CCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-G---
T ss_pred HHcCCcCEEEeeCCC------cc--Cch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-h---
Confidence 456677777777777 66 455 5677777777777777 6666666 7777777777777 5444433 2
Q ss_pred cccccceecccccccCCcccccccccccccccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEee
Q 045150 586 MRELRHLIGKLIGTLPIENLTNLQTLKYVRCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVN 665 (841)
Q Consensus 586 L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~ 665 (841)
+..+++|+.|++.+|.-.....+..+++|+.|++++|.... . ..+..+++|+.|+++
T Consensus 103 ----------------~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-----~--~~l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 103 ----------------IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITN-----I--SPLAGLTNLQYLSIG 159 (308)
T ss_dssp ----------------GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCC-----C--GGGGGCTTCCEEECC
T ss_pred ----------------hcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCc-----C--ccccCCCCccEEEcc
Confidence 33444555555555542222336666777777777665331 1 225667777777777
Q ss_pred ecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC-CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEE
Q 045150 666 LSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT-LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDL 744 (841)
Q Consensus 666 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L 744 (841)
+|.+.. +..+..+++|+.|++++|... ++. +..+ ++|+.|+|++|.+.+.. .+..+++|+.|+|
T Consensus 160 ~n~l~~-----------~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l 224 (308)
T 1h6u_A 160 NAQVSD-----------LTPLANLSKLTTLKADDNKISDISP-LASL-PNLIEVHLKNNQISDVS--PLANTSNLFIVTL 224 (308)
T ss_dssp SSCCCC-----------CGGGTTCTTCCEEECCSSCCCCCGG-GGGC-TTCCEEECTTSCCCBCG--GGTTCTTCCEEEE
T ss_pred CCcCCC-----------ChhhcCCCCCCEEECCCCccCcChh-hcCC-CCCCEEEccCCccCccc--cccCCCCCCEEEc
Confidence 774322 112445666777777765433 332 4444 77888888888776443 3777788888888
Q ss_pred ecccCCC
Q 045150 745 NFYRDSG 751 (841)
Q Consensus 745 ~~N~l~~ 751 (841)
++|.+++
T Consensus 225 ~~N~i~~ 231 (308)
T 1h6u_A 225 TNQTITN 231 (308)
T ss_dssp EEEEEEC
T ss_pred cCCeeec
Confidence 7776654
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=4.4e-19 Score=199.71 Aligned_cols=330 Identities=15% Similarity=0.065 Sum_probs=160.3
Q ss_pred cceEeeeeecCCCeeeecc---CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhc
Q 045150 461 SCRRQAIYSETPSFFWLHH---SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKL 537 (841)
Q Consensus 461 ~~r~l~i~~~~~~~~~~~~---~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i 537 (841)
.++++.+..+......... .+++++.|.+.++.........++..+..+++|++|+|++|. +.+ ..+..+
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~------l~~-~~~~~l 76 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE------LGD-VGVHCV 76 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC------CHH-HHHHHH
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc------CCh-HHHHHH
Confidence 3455555533333222111 456677777766654321112334556666777777777766 542 222222
Q ss_pred -cccC----cceeeecCCCcCcc-----ccCcccCCCCCCCeeecC-Cccccc-Ccccc-----ccccccceecc---cc
Q 045150 538 -GKLI----HLKYLGIRGTTFIR-----DFPSSIFNLPGLQTLDLS-RCIVQL-PPETD-----MMRELRHLIGK---LI 597 (841)
Q Consensus 538 -~~L~----~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~L~-~~~~~l-p~~~~-----~L~~L~~L~~~---~~ 597 (841)
..++ +|++|+|++| .+. .+|..+.++++|++|+++ |.+... +..+. .+++|++|... ..
T Consensus 77 ~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 2233 5777777766 343 346666667777777776 443211 11111 13345555321 11
Q ss_pred c------ccCCccccccccccccccc--chhccccc-----cccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEe
Q 045150 598 G------TLPIENLTNLQTLKYVRCK--SWIRVNTA-----KLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSV 664 (841)
Q Consensus 598 ~------~~~i~~l~~L~~L~l~~~~--~~~~~~l~-----~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l 664 (841)
. +..+..+++|++|++.+|. ...+..+. ..++|++|++++|.....+...+. ..+..+++|+.|++
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC-GIVASKASLRELAL 234 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH-HHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH-HHHHhCCCccEEec
Confidence 1 1113445566666666554 11111121 234566666655543322111122 44455556666666
Q ss_pred eecCCCccCC-----------CCCccc-------cc------CCCCCCCcccceeEeccccCC------CCccccccCCC
Q 045150 665 NLSDGTVVLP-----------QSSNAF-------AS------LQPLSHCQRLVDLRLTGRMTT------LPKDMHVLLPN 714 (841)
Q Consensus 665 ~~~~~~~~~~-----------~~~~~~-------~~------l~~l~~~~~L~~L~L~~~~~~------~p~~~~~l~~~ 714 (841)
++|.+..... .....+ .. ...+..+++|++|++++|... +...+....++
T Consensus 235 s~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred cCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 6554322100 000000 00 001223566777777765321 11111111257
Q ss_pred ccEEEEEeccCCCCC----hhhhhhcccCCeEEEecccCCCCCccccceEEc-CCCcccccceeccccccCce-----EE
Q 045150 715 LECLSLKVVLPEENP----MPALEMLSNLTILDLNFYRDSGDPYHEKKLSCR-AEGFPLLEILLLDAVEVGIV-----EW 784 (841)
Q Consensus 715 L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~-~~~f~~L~~L~l~~~~~~l~-----~~ 784 (841)
|+.|+|++|.+++.. +..+..+++|+.|+|++|.+++... ..+... ....++|+.|++++|. ++ .+
T Consensus 315 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~--~~l~~~l~~~~~~L~~L~L~~n~--i~~~~~~~l 390 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV--RELCQGLGQPGSVLRVLWLADCD--VSDSSCSSL 390 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH--HHHHHHHTSTTCCCCEEECTTSC--CCHHHHHHH
T ss_pred ceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH--HHHHHHHcCCCCceEEEECCCCC--CChhhHHHH
Confidence 777777777765442 3445667888888887765432110 000000 1125688888888886 65 23
Q ss_pred EEccCccccccccccccccC
Q 045150 785 QVEERAMPMLRGLKIPSDIP 804 (841)
Q Consensus 785 ~~~~~~~p~L~~L~l~~~c~ 804 (841)
+.....+++|++|+++ +|+
T Consensus 391 ~~~l~~~~~L~~L~l~-~N~ 409 (461)
T 1z7x_W 391 AATLLANHSLRELDLS-NNC 409 (461)
T ss_dssp HHHHHHCCCCCEEECC-SSS
T ss_pred HHHHHhCCCccEEECC-CCC
Confidence 3333457889999998 664
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=2.5e-17 Score=185.44 Aligned_cols=240 Identities=13% Similarity=0.047 Sum_probs=172.6
Q ss_pred cchhhcccc----CcceeeecCCCcCcccc-CcccCCCCCCCeeecC-CcccccCccccccccccceecccccccCCccc
Q 045150 532 LHNKKLGKL----IHLKYLGIRGTTFIRDF-PSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPIENL 605 (841)
Q Consensus 532 ~~p~~i~~L----~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i~~l 605 (841)
.+|..+..+ ++|++|+|++| .+..+ |..++++++|++|+|+ |.+...++ +..+++|++|+........+...
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~ 98 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG 98 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC
T ss_pred hhHHHHHHhcccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC
Confidence 455555544 48999999999 56655 5689999999999999 77766665 88999999995433222234445
Q ss_pred cccccccccccc-chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCC
Q 045150 606 TNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQ 684 (841)
Q Consensus 606 ~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 684 (841)
++|+.|++.+|. ...+. ..+++|+.|++++|... ...+..+..+++|+.|++++|.+.+..|..+
T Consensus 99 ~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l------- 164 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANNKIT-----MLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL------- 164 (487)
T ss_dssp TTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCC-----SGGGBCGGGGSSEEEEECTTSCCCEEEGGGG-------
T ss_pred CCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCC-----CCCchhhcCCCCCCEEECCCCCCCCcChHHH-------
Confidence 889999999887 22222 34688999999988744 1222567788999999999997665433221
Q ss_pred CCCCCcccceeEeccccCC-CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcC
Q 045150 685 PLSHCQRLVDLRLTGRMTT-LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRA 763 (841)
Q Consensus 685 ~l~~~~~L~~L~L~~~~~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 763 (841)
...+++|+.|+|++|... +|.. .. +++|+.|+|++|.+++. ++.++.+++|+.|+|++|.+++.+ ...
T Consensus 165 -~~~l~~L~~L~Ls~N~l~~~~~~-~~-l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~lp-------~~l 233 (487)
T 3oja_A 165 -AASSDTLEHLNLQYNFIYDVKGQ-VV-FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIE-------KAL 233 (487)
T ss_dssp -GGGTTTCCEEECTTSCCCEEECC-CC-CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEEC-------TTC
T ss_pred -hhhCCcccEEecCCCcccccccc-cc-CCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcccc-------hhh
Confidence 124678999999997543 4432 23 49999999999998764 445889999999999998776422 223
Q ss_pred CCcccccceeccccccCce--EEEEccCccccccccccc
Q 045150 764 EGFPLLEILLLDAVEVGIV--EWQVEERAMPMLRGLKIP 800 (841)
Q Consensus 764 ~~f~~L~~L~l~~~~~~l~--~~~~~~~~~p~L~~L~l~ 800 (841)
..+++|+.|++++|+ +. .++.....++.|+.|.+.
T Consensus 234 ~~l~~L~~L~l~~N~--l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 234 RFSQNLEHFDLRGNG--FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCCTTCCEEECTTCC--BCHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCCEEEcCCCC--CcCcchHHHHHhCCCCcEEecc
Confidence 567899999999997 54 333335667888888774
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=2.1e-16 Score=164.42 Aligned_cols=203 Identities=19% Similarity=0.146 Sum_probs=129.9
Q ss_pred ceeeEEEeecCCcccccccccccch-hhccccCcceeeecCCCcCccccC-cccCCCCCCCeeecC-CcccccCc-cccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHN-KKLGKLIHLKYLGIRGTTFIRDFP-SSIFNLPGLQTLDLS-RCIVQLPP-ETDM 585 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p-~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~-~~~~~lp~-~~~~ 585 (841)
+.|++|++++|. ++ .++ ..+.++++|++|+|++| .+..+| ..+.++++|++|+++ +.+..++. .+
T Consensus 28 ~~l~~L~ls~n~------l~--~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-- 96 (276)
T 2z62_A 28 FSTKNLDLSFNP------LR--HLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-- 96 (276)
T ss_dssp TTCCEEECTTCC------CC--EECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--
T ss_pred CCccEEECCCCc------cc--ccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhh--
Confidence 358888888887 76 344 36778888888888888 555554 367788888888888 55655543 33
Q ss_pred cccccceecccccccCCccccccccccccccc--chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEE
Q 045150 586 MRELRHLIGKLIGTLPIENLTNLQTLKYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLS 663 (841)
Q Consensus 586 L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~ 663 (841)
..+++|++|++.++. ......++.+++|+.|++++|... ...++ ..+..+++|+.|+
T Consensus 97 -----------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~l~-~~~~~l~~L~~L~ 155 (276)
T 2z62_A 97 -----------------SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ---SFKLP-EYFSNLTNLEHLD 155 (276)
T ss_dssp -----------------TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC---CCCCC-GGGGGCTTCCEEE
T ss_pred -----------------cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccc---eecCc-hhhccCCCCCEEE
Confidence 344455555555554 222224667777777777776643 21223 5677777888888
Q ss_pred eeecCCCccCCCCCcccccCCCCCCCcccc-eeEecccc-CCCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCe
Q 045150 664 VNLSDGTVVLPQSSNAFASLQPLSHCQRLV-DLRLTGRM-TTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTI 741 (841)
Q Consensus 664 l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~ 741 (841)
+++|.+.+..+..+.. +..++.|. .|++++|. ..+|...... .+|+.|+|++|.++..++..++.+++|+.
T Consensus 156 Ls~N~l~~~~~~~~~~------l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRV------LHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp CCSSCCCEECGGGGHH------HHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred CCCCCCCcCCHHHhhh------hhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccE
Confidence 8877654432222111 11122222 67777653 3355555554 68999999999888776667888999999
Q ss_pred EEEecccCCC
Q 045150 742 LDLNFYRDSG 751 (841)
Q Consensus 742 L~L~~N~l~~ 751 (841)
|+|++|.++.
T Consensus 229 L~l~~N~~~c 238 (276)
T 2z62_A 229 IWLHTNPWDC 238 (276)
T ss_dssp EECCSSCBCC
T ss_pred EEccCCcccc
Confidence 9999887654
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=5.5e-17 Score=171.99 Aligned_cols=219 Identities=15% Similarity=0.066 Sum_probs=145.5
Q ss_pred eeEEEeecCCcccccccccccchhhcc-------ccCcceeeecCCCcCccccCccc--CCCCCCCeeecC-CcccccCc
Q 045150 512 LRVLEIEESGYFSRMLFDNRLHNKKLG-------KLIHLKYLGIRGTTFIRDFPSSI--FNLPGLQTLDLS-RCIVQLPP 581 (841)
Q Consensus 512 Lr~L~L~~~~~~~~~~l~~~~~p~~i~-------~L~~L~~L~L~~~~~~~~lp~~i--~~L~~L~~L~L~-~~~~~lp~ 581 (841)
|+.|+|++|. +....+|..+. ++++|++|+|++|.....+|..+ +.+++|++|+++ +.+..+|.
T Consensus 65 L~~L~L~~n~------l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 138 (312)
T 1wwl_A 65 IKSLSLKRLT------VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDA 138 (312)
T ss_dssp HHHCCCCEEE------EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSS
T ss_pred Hhhccccccc------ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhH
Confidence 7778888887 64324555554 68888888888884334677776 788888888888 66777777
Q ss_pred ccccc-----ccccceec---ccccc--cCCccccccccccccccc-ch---hcccc--ccccCCCceEEeccCCCCcCc
Q 045150 582 ETDMM-----RELRHLIG---KLIGT--LPIENLTNLQTLKYVRCK-SW---IRVNT--AKLVNLRELHIVGGDGQSMGE 645 (841)
Q Consensus 582 ~~~~L-----~~L~~L~~---~~~~~--~~i~~l~~L~~L~l~~~~-~~---~~~~l--~~l~~L~~L~l~~~~~~~~g~ 645 (841)
.+..+ ++|++|.. ..... ..++.+++|++|++++|. .. .+..+ ..+++|+.|++++|.....
T Consensus 139 ~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-- 216 (312)
T 1wwl_A 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-- 216 (312)
T ss_dssp HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH--
T ss_pred HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch--
Confidence 77766 77777732 22222 237788888888888876 11 23344 7788888888888764311
Q ss_pred ccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecccc-CCCCccccccCCCccEEEEEecc
Q 045150 646 MEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPKDMHVLLPNLECLSLKVVL 724 (841)
Q Consensus 646 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~ 724 (841)
.......+..+++|+.|++++|.+.+..| ...+..+++|+.|++++|. ..+|.++. ++|+.|+|++|.
T Consensus 217 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 217 SGVCSALAAARVQLQGLDLSHNSLRDAAG--------APSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNR 285 (312)
T ss_dssp HHHHHHHHHTTCCCSEEECTTSCCCSSCC--------CSCCCCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEECCCCcCCcccc--------hhhhhhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCC
Confidence 12221344567888888888886554322 1123345678888888763 44666553 678888888887
Q ss_pred CCCCChhhhhhcccCCeEEEecccCCC
Q 045150 725 PEENPMPALEMLSNLTILDLNFYRDSG 751 (841)
Q Consensus 725 l~~~~~~~l~~l~~L~~L~L~~N~l~~ 751 (841)
+++. + .+..+++|+.|+|++|.+++
T Consensus 286 l~~~-p-~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 286 LDRN-P-SPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSC-C-CTTTSCEEEEEECTTCTTTC
T ss_pred CCCC-h-hHhhCCCCCEEeccCCCCCC
Confidence 7654 2 27778888888887776654
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=1.6e-18 Score=195.17 Aligned_cols=172 Identities=16% Similarity=-0.027 Sum_probs=101.4
Q ss_pred Cccccccccccccccc--chh-----ccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCC
Q 045150 602 IENLTNLQTLKYVRCK--SWI-----RVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLP 674 (841)
Q Consensus 602 i~~l~~L~~L~l~~~~--~~~-----~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 674 (841)
+..+++|++|++.+|. ... ......+++|++|++++|.....|...+. ..+..+++|+.|++++|.+....+
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC-RVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-HHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH-HHHhhCCCcceEECCCCCCchHHH
Confidence 3445666666666655 111 11122456666676666653322111223 455667777777777774432111
Q ss_pred CCCcccccCCCCCCCcccceeEeccccCC------CCccccccCCCccEEEEEeccCCCCChhhhhh-----cccCCeEE
Q 045150 675 QSSNAFASLQPLSHCQRLVDLRLTGRMTT------LPKDMHVLLPNLECLSLKVVLPEENPMPALEM-----LSNLTILD 743 (841)
Q Consensus 675 ~~~~~~~~l~~l~~~~~L~~L~L~~~~~~------~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~-----l~~L~~L~ 743 (841)
..+... ...+.++|+.|++++|... +|.++... ++|+.|+|++|.+++..+..+.. +++|+.|+
T Consensus 302 ~~l~~~----l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 302 RLLCET----LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN-RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHH----HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC-SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHHH----hccCCccceeeEcCCCCCchHHHHHHHHHHhhC-CCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 111000 0123468999999987532 45555555 99999999999987655555554 67999999
Q ss_pred EecccCCCCCccccceEEcCCCcccccceeccccccCceE
Q 045150 744 LNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVE 783 (841)
Q Consensus 744 L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~ 783 (841)
|++|.+++... ..+......+++|++|++++|+ +..
T Consensus 377 L~~n~i~~~~~--~~l~~~l~~~~~L~~L~l~~N~--i~~ 412 (461)
T 1z7x_W 377 LADCDVSDSSC--SSLAATLLANHSLRELDLSNNC--LGD 412 (461)
T ss_dssp CTTSCCCHHHH--HHHHHHHHHCCCCCEEECCSSS--CCH
T ss_pred CCCCCCChhhH--HHHHHHHHhCCCccEEECCCCC--CCH
Confidence 99986653110 0111122347899999999997 654
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=1.8e-15 Score=156.63 Aligned_cols=196 Identities=21% Similarity=0.246 Sum_probs=114.7
Q ss_pred eeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCc-ccCCCCCCCeeecC-CcccccCcccccccc
Q 045150 511 LLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPS-SIFNLPGLQTLDLS-RCIVQLPPETDMMRE 588 (841)
Q Consensus 511 ~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~ 588 (841)
.++.++++++. ++ .+|..+. .+|++|+|++| .+..+|. .+.++++|++|+++ +.+..+|..+
T Consensus 17 ~~~~l~~~~~~------l~--~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~----- 80 (270)
T 2o6q_A 17 NKNSVDCSSKK------LT--AIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI----- 80 (270)
T ss_dssp TTTEEECTTSC------CS--SCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT-----
T ss_pred CCCEEEccCCC------CC--ccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhh-----
Confidence 35667777666 65 5665443 46677777777 4555543 56677777777777 5555555432
Q ss_pred ccceecccccccCCccccccccccccccc--chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeee
Q 045150 589 LRHLIGKLIGTLPIENLTNLQTLKYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNL 666 (841)
Q Consensus 589 L~~L~~~~~~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~ 666 (841)
+..+++|++|++.++. ...+..+..+++|+.|++++|... .+.+..+..+++|+.|++++
T Consensus 81 -------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 81 -------------FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-----SLPPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp -------------TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCS
T ss_pred -------------hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-----eeCHHHhCcCcCCCEEECCC
Confidence 2333444444444444 112233456666777777666533 11114456677777777777
Q ss_pred cCCCccCCCCCcccccCCCCCCCcccceeEecccc-CCCCcc-ccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEE
Q 045150 667 SDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPKD-MHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDL 744 (841)
Q Consensus 667 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~~-~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L 744 (841)
|.+....+ ..+..+++|+.|++++|. ..+|.. +..+ ++|+.|+|++|.++..++..+..+++|+.|+|
T Consensus 143 n~l~~~~~---------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 143 NELQSLPK---------GVFDKLTSLKELRLYNNQLKRVPEGAFDKL-TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp SCCCCCCT---------TTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CcCCccCH---------hHccCCcccceeEecCCcCcEeChhHhccC-CCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 75432211 124455667777777653 334443 3444 77888888888777666666777788888888
Q ss_pred ecccCC
Q 045150 745 NFYRDS 750 (841)
Q Consensus 745 ~~N~l~ 750 (841)
++|.+.
T Consensus 213 ~~N~~~ 218 (270)
T 2o6q_A 213 QENPWD 218 (270)
T ss_dssp CSSCBC
T ss_pred cCCCee
Confidence 777554
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.63 E-value=1.5e-15 Score=178.23 Aligned_cols=124 Identities=21% Similarity=0.166 Sum_probs=101.8
Q ss_pred CCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccch-hhccccCcceeeecCCCcCccccCc
Q 045150 481 NSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHN-KKLGKLIHLKYLGIRGTTFIRDFPS 559 (841)
Q Consensus 481 ~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p-~~i~~L~~L~~L~L~~~~~~~~lp~ 559 (841)
.++++.|.+.++.... ..+..|.++++|++|+|++|. ++ .+| ..|.+|++|++|+|++| .+..+|.
T Consensus 51 p~~~~~LdLs~N~i~~----l~~~~f~~l~~L~~L~Ls~N~------i~--~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~ 117 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRH----LGSYSFFSFPELQVLDLSRCE------IQ--TIEDGAYQSLSHLSTLILTGN-PIQSLAL 117 (635)
T ss_dssp CTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCC------CC--EECTTTTTTCTTCCEEECTTC-CCCEECG
T ss_pred CcCCCEEEeeCCCCCC----CCHHHHhCCCCCCEEECCCCc------CC--CcChhHhcCCCCCCEEEccCC-cCCCCCH
Confidence 3578999999988743 455679999999999999999 87 554 57999999999999999 7888875
Q ss_pred -ccCCCCCCCeeecC-CcccccCc-cccccccccceec---ccc---cccCCccccccccccccccc
Q 045150 560 -SIFNLPGLQTLDLS-RCIVQLPP-ETDMMRELRHLIG---KLI---GTLPIENLTNLQTLKYVRCK 617 (841)
Q Consensus 560 -~i~~L~~L~~L~L~-~~~~~lp~-~~~~L~~L~~L~~---~~~---~~~~i~~l~~L~~L~l~~~~ 617 (841)
.+.+|++|++|+|+ |++..+|. .+++|++|++|.. ... .+..++.+++|++|++.+|.
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 58999999999999 88888886 5889999999953 222 22337889999999988875
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=1.5e-17 Score=176.35 Aligned_cols=246 Identities=19% Similarity=0.138 Sum_probs=153.4
Q ss_pred hccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCcc--ccCcccC-------CCCCCCeeecC-Cc
Q 045150 506 FKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIR--DFPSSIF-------NLPGLQTLDLS-RC 575 (841)
Q Consensus 506 ~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~--~lp~~i~-------~L~~L~~L~L~-~~ 575 (841)
+...++|+.|++++|. + .+|..+... |++|+|++| .+. .+|..+. ++++|++|+++ +.
T Consensus 39 ~~~~~~L~~l~l~~n~------l---~~p~~~~~~--L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 106 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDT------E---ADLGQFTDI--IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLE 106 (312)
T ss_dssp EEEEEECTTHHHHCCT------T---CCCHHHHHH--HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB
T ss_pred EccCCCceeEeecccc------c---ccHHHHHHH--Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCc
Confidence 4556678888888887 5 356555544 888888888 443 4566555 68888888888 65
Q ss_pred cc-ccCccccccccccceecccccccCCccccccccccccccc-chhccccccc-----cCCCceEEeccCCCCcCcccc
Q 045150 576 IV-QLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SWIRVNTAKL-----VNLRELHIVGGDGQSMGEMEF 648 (841)
Q Consensus 576 ~~-~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l-----~~L~~L~l~~~~~~~~g~~~~ 648 (841)
+. .+|..+. ++.+++|++|++++|. ...+..++.+ ++|++|++++|... ..
T Consensus 107 l~~~~~~~~~-----------------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~-----~~ 164 (312)
T 1wwl_A 107 VTGTAPPPLL-----------------EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-----NF 164 (312)
T ss_dssp CBSCCCCCSS-----------------SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCC-----CC
T ss_pred ccchhHHHHH-----------------HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCc-----cc
Confidence 55 4565430 1445566666666665 2224445555 77888888777633 11
Q ss_pred cHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC----CCccccccCCCccEEEEEecc
Q 045150 649 SFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT----LPKDMHVLLPNLECLSLKVVL 724 (841)
Q Consensus 649 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~----~p~~~~~l~~~L~~L~L~~~~ 724 (841)
.+..+..+++|+.|++++|.+.+..+ +..-..+..+++|++|++++|... ++..+...+++|+.|+|++|.
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELGERG-----LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCHHHH-----HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred hHHHhccCCCCCEEECCCCCcCcchH-----HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 12456677788888888775433110 000011245677888888776432 222222223788888888888
Q ss_pred CCCCCh-hhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEccCcccccccccccccc
Q 045150 725 PEENPM-PALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDI 803 (841)
Q Consensus 725 l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c 803 (841)
+.+..+ +.+..+++|+.|+|++|.++..+. .-+++|++|++++|. ++.+|. ...+++|++|+++ ++
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~---------~~~~~L~~L~Ls~N~--l~~~p~-~~~l~~L~~L~L~-~N 306 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---------GLPAKLSVLDLSYNR--LDRNPS-PDELPQVGNLSLK-GN 306 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTTSCCSSCCS---------SCCSEEEEEECCSSC--CCSCCC-TTTSCEEEEEECT-TC
T ss_pred CCcccchhhhhhcCCCCEEECCCCccChhhh---------hccCCceEEECCCCC--CCCChh-HhhCCCCCEEecc-CC
Confidence 766442 455667888888888877653221 112688888888886 777754 6678888888887 54
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.62 E-value=2.8e-15 Score=172.18 Aligned_cols=250 Identities=17% Similarity=0.050 Sum_probs=142.4
Q ss_pred ceEeeeeecCCCeeeeccCCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccC
Q 045150 462 CRRQAIYSETPSFFWLHHSNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLI 541 (841)
Q Consensus 462 ~r~l~i~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~ 541 (841)
++.+.+..+....++.. ..++++.|.+.++.... ++. .+++|++|+|++|. ++ .+|. .++
T Consensus 42 l~~L~ls~n~L~~lp~~-l~~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~Ls~N~------l~--~lp~---~l~ 101 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDC-LPAHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQ------LT--SLPV---LPP 101 (622)
T ss_dssp CCEEECCSSCCSCCCSC-CCTTCSEEEECSCCCSC-----CCC---CCTTCCEEEECSCC------CS--CCCC---CCT
T ss_pred CcEEEecCCCcCccChh-hCCCCcEEEecCCCCCC-----CCC---cCCCCCEEEcCCCc------CC--cCCC---CCC
Confidence 34455554444433321 22577777777766532 111 45677777777777 66 5664 567
Q ss_pred cceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceecccccccCC-ccccccccccccccc-c
Q 045150 542 HLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPI-ENLTNLQTLKYVRCK-S 618 (841)
Q Consensus 542 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i-~~l~~L~~L~l~~~~-~ 618 (841)
+|++|+|++| .+..+|. .+.+|++|+++ |.+..+|..+ ++|++|.........+ ..+++|+.|++.+|. .
T Consensus 102 ~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N~l~~lp~~l---~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 102 GLLELSIFSN-PLTHLPA---LPSGLCKLWIFGNQLTSLPVLP---PGLQELSVSDNQLASLPALPSELCKLWAYNNQLT 174 (622)
T ss_dssp TCCEEEECSC-CCCCCCC---CCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CCCEEECcCC-cCCCCCC---CCCCcCEEECCCCCCCcCCCCC---CCCCEEECcCCcCCCcCCccCCCCEEECCCCCCC
Confidence 7777777777 6666766 56777777777 6666666643 5666663311111111 234567777777666 3
Q ss_pred hhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEec
Q 045150 619 WIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLT 698 (841)
Q Consensus 619 ~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~ 698 (841)
..+ ..+++|+.|++++|.... ++ . .+++|+.|++++|.+.. ++ ..+++|+.|+++
T Consensus 175 ~l~---~~~~~L~~L~Ls~N~l~~-----l~-~---~~~~L~~L~L~~N~l~~--------l~-----~~~~~L~~L~Ls 229 (622)
T 3g06_A 175 SLP---MLPSGLQELSVSDNQLAS-----LP-T---LPSELYKLWAYNNRLTS--------LP-----ALPSGLKELIVS 229 (622)
T ss_dssp CCC---CCCTTCCEEECCSSCCSC-----CC-C---CCTTCCEEECCSSCCSS--------CC-----CCCTTCCEEECC
T ss_pred CCc---ccCCCCcEEECCCCCCCC-----CC-C---ccchhhEEECcCCcccc--------cC-----CCCCCCCEEEcc
Confidence 233 445677777777765331 11 1 23567777777764331 11 113567777777
Q ss_pred ccc-CCCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceecccc
Q 045150 699 GRM-TTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAV 777 (841)
Q Consensus 699 ~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 777 (841)
+|. ..+| .. +++|+.|+|++|.++..+. .+++|+.|+|++|+++..+ .....+++|+.|++++|
T Consensus 230 ~N~L~~lp---~~-l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp-------~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 230 GNRLTSLP---VL-PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLP-------ESLIHLSSETTVNLEGN 294 (622)
T ss_dssp SSCCSCCC---CC-CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCC-------GGGGGSCTTCEEECCSC
T ss_pred CCccCcCC---CC-CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCC-------HHHhhccccCEEEecCC
Confidence 653 2344 12 3677777777777653222 5567777777776655322 11235667777777777
Q ss_pred c
Q 045150 778 E 778 (841)
Q Consensus 778 ~ 778 (841)
+
T Consensus 295 ~ 295 (622)
T 3g06_A 295 P 295 (622)
T ss_dssp C
T ss_pred C
Confidence 6
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=1.6e-15 Score=160.12 Aligned_cols=197 Identities=23% Similarity=0.206 Sum_probs=151.5
Q ss_pred hccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceecccccccCCcccccccccccc
Q 045150 536 KLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYV 614 (841)
Q Consensus 536 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~ 614 (841)
.+..+++|++|++++| .+..+| .+..+++|++|+++ |.+..++. +. .+++|+.|++.
T Consensus 36 ~~~~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~-------------------~l~~L~~L~L~ 93 (308)
T 1h6u_A 36 TQADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LK-------------------NLTKITELELS 93 (308)
T ss_dssp CHHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GT-------------------TCCSCCEEECC
T ss_pred cHHHcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcCCCChh-Hc-------------------cCCCCCEEEcc
Confidence 3557899999999999 788887 58999999999999 76666665 43 44566666666
Q ss_pred cccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccce
Q 045150 615 RCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVD 694 (841)
Q Consensus 615 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~ 694 (841)
+|.-.....+..+++|+.|++++|.... + ..+..+++|+.|++++|.+.+ +..+..+++|+.
T Consensus 94 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~-----~--~~l~~l~~L~~L~l~~n~l~~-----------~~~l~~l~~L~~ 155 (308)
T 1h6u_A 94 GNPLKNVSAIAGLQSIKTLDLTSTQITD-----V--TPLAGLSNLQVLYLDLNQITN-----------ISPLAGLTNLQY 155 (308)
T ss_dssp SCCCSCCGGGTTCTTCCEEECTTSCCCC-----C--GGGTTCTTCCEEECCSSCCCC-----------CGGGGGCTTCCE
T ss_pred CCcCCCchhhcCCCCCCEEECCCCCCCC-----c--hhhcCCCCCCEEECCCCccCc-----------CccccCCCCccE
Confidence 6663333468889999999999987442 2 347889999999999995543 122567789999
Q ss_pred eEeccccCC-CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCccccccee
Q 045150 695 LRLTGRMTT-LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILL 773 (841)
Q Consensus 695 L~L~~~~~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~ 773 (841)
|++++|... ++. +..+ ++|+.|+|++|.+++.. .+..+++|+.|+|++|.+++.. ....+++|+.|+
T Consensus 156 L~l~~n~l~~~~~-l~~l-~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~--------~l~~l~~L~~L~ 223 (308)
T 1h6u_A 156 LSIGNAQVSDLTP-LANL-SKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS--------PLANTSNLFIVT 223 (308)
T ss_dssp EECCSSCCCCCGG-GTTC-TTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG--------GGTTCTTCCEEE
T ss_pred EEccCCcCCCChh-hcCC-CCCCEEECCCCccCcCh--hhcCCCCCCEEEccCCccCccc--------cccCCCCCCEEE
Confidence 999997544 444 6665 99999999999987543 3899999999999999876543 135789999999
Q ss_pred ccccccCceEEEE
Q 045150 774 LDAVEVGIVEWQV 786 (841)
Q Consensus 774 l~~~~~~l~~~~~ 786 (841)
+++|+ ++..+.
T Consensus 224 l~~N~--i~~~~~ 234 (308)
T 1h6u_A 224 LTNQT--ITNQPV 234 (308)
T ss_dssp EEEEE--EECCCE
T ss_pred ccCCe--eecCCe
Confidence 99997 766543
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=1.6e-15 Score=157.10 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=45.2
Q ss_pred HHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecccc-CCCCcc-ccccCCCccEEEEEeccCCCCC
Q 045150 652 SIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPKD-MHVLLPNLECLSLKVVLPEENP 729 (841)
Q Consensus 652 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~~-~~~l~~~L~~L~L~~~~l~~~~ 729 (841)
.+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|. ..+|.. +..+ ++|+.|+|++|.+++..
T Consensus 128 ~~~~l~~L~~L~L~~n~l~~~~~---------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 128 VFDKLTNLTYLNLAHNQLQSLPK---------GVFDKLTNLTELDLSYNQLQSLPEGVFDKL-TQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCC
T ss_pred HhccCCCCCEEECCCCccCccCH---------HHhccCccCCEEECCCCCcCccCHHHhcCC-ccCCEEECCCCcCCccC
Confidence 34556666666666664332111 112334445555555432 223322 2333 66666666666666555
Q ss_pred hhhhhhcccCCeEEEecccC
Q 045150 730 MPALEMLSNLTILDLNFYRD 749 (841)
Q Consensus 730 ~~~l~~l~~L~~L~L~~N~l 749 (841)
+..++.+++|+.|+|++|.+
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCB
T ss_pred HHHHhCCcCCCEEEccCCCc
Confidence 55566666666666666533
No 79
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=3.6e-16 Score=181.87 Aligned_cols=297 Identities=18% Similarity=0.130 Sum_probs=161.8
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCc---cc
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFI---RD 556 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~---~~ 556 (841)
.+++|+.|.+..+.........+...+.++++|++|++++|. +. .+|..+..+++|++|+++++... ..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~------~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE------IL--ELVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB------GG--GGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc------HH--HHHHHHhhhhHHHhhcccccccccchHH
Confidence 344555555544433211112333444555556666666555 44 45555555566666655532111 12
Q ss_pred cCcccCCCCCCCeeecC-CcccccCccccccccccceeccccc--c----cCCccccccccccccccc--chhccccccc
Q 045150 557 FPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIG--T----LPIENLTNLQTLKYVRCK--SWIRVNTAKL 627 (841)
Q Consensus 557 lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~--~----~~i~~l~~L~~L~l~~~~--~~~~~~l~~l 627 (841)
.+..+..+++|++|+++ .....+|..+..+++|++|...... . .-+..+++|+.|++.++. .........+
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhC
Confidence 33445556666666665 3344556666666777776331111 0 014566777777766332 2222333556
Q ss_pred cCCCceEEec----------cCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCC-CCcccceeE
Q 045150 628 VNLRELHIVG----------GDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLS-HCQRLVDLR 696 (841)
Q Consensus 628 ~~L~~L~l~~----------~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~ 696 (841)
++|++|++.+ +... +...+. .....+++|++|++..+.+++. .+..+. .+++|+.|+
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~--~~~~~~-~l~~~~~~L~~L~l~~~~l~~~---------~~~~l~~~~~~L~~L~ 409 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLV--SQRGLI-ALAQGCQELEYMAVYVSDITNE---------SLESIGTYLKNLCDFR 409 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCC--CHHHHH-HHHHHCTTCSEEEEEESCCCHH---------HHHHHHHHCCSCCEEE
T ss_pred CCCCEEEeecCccccccccccCcc--CHHHHH-HHHhhCccCeEEEeecCCccHH---------HHHHHHhhCCCCcEEE
Confidence 7777777773 2111 011111 2344577777777766543321 111122 367888888
Q ss_pred ecc-----ccCCCCcc------ccccCCCccEEEEEecc--CCCCChhhhhh-cccCCeEEEecccCCCCCccccceEEc
Q 045150 697 LTG-----RMTTLPKD------MHVLLPNLECLSLKVVL--PEENPMPALEM-LSNLTILDLNFYRDSGDPYHEKKLSCR 762 (841)
Q Consensus 697 L~~-----~~~~~p~~------~~~l~~~L~~L~L~~~~--l~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~ 762 (841)
+.+ .....|.. +.. +++|+.|+|+.|. +++..+..++. +++|+.|+|++|.+++. .+...
T Consensus 410 l~~~~~~n~l~~~p~~~~~~~~~~~-~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-----~~~~~ 483 (592)
T 3ogk_B 410 LVLLDREERITDLPLDNGVRSLLIG-CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE-----GLMEF 483 (592)
T ss_dssp EEECSCCSCCSSCCCHHHHHHHHHH-CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH-----HHHHH
T ss_pred EeecCCCccccCchHHHHHHHHHHh-CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH-----HHHHH
Confidence 863 12222211 233 4889999998654 55544555554 88999999988755431 12222
Q ss_pred CCCcccccceeccccccCceEE--EEccCccccccccccccccCCC
Q 045150 763 AEGFPLLEILLLDAVEVGIVEW--QVEERAMPMLRGLKIPSDIPNL 806 (841)
Q Consensus 763 ~~~f~~L~~L~l~~~~~~l~~~--~~~~~~~p~L~~L~l~~~c~~L 806 (841)
..++++|+.|++++|+ +++. +.....+|+|++|+++ +|+ +
T Consensus 484 ~~~~~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~ls-~n~-i 525 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCC--FSERAIAAAVTKLPSLRYLWVQ-GYR-A 525 (592)
T ss_dssp HTCCTTCCEEEEESCC--CBHHHHHHHHHHCSSCCEEEEE-SCB-C
T ss_pred HhcCcccCeeeccCCC--CcHHHHHHHHHhcCccCeeECc-CCc-C
Confidence 3467899999999997 5432 1123468999999999 887 5
No 80
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=3.7e-16 Score=181.75 Aligned_cols=297 Identities=14% Similarity=-0.000 Sum_probs=145.2
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccc---cccchhhccccCcceeeecCCCcCccc
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFD---NRLHNKKLGKLIHLKYLGIRGTTFIRD 556 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~---~~~~p~~i~~L~~L~~L~L~~~~~~~~ 556 (841)
.+++|+.|.+.++.........+...+..++.|+.|++++|. ++ ...++..+.++++|++|+|++| .+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~------~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~ 234 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE------FAKISPKDLETIARNCRSLVSVKVGDF-EILE 234 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC------CSSCCHHHHHHHHHHCTTCCEEECSSC-BGGG
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC------CCccCHHHHHHHHhhCCCCcEEeccCc-cHHH
Confidence 345555555554432210011133344555555555555554 32 1133334445555555555555 4444
Q ss_pred cCcccCCCCCCCeeecC-Ccc----cccCccccccccccceeccc----ccccCCccccccccccccccc---chhcccc
Q 045150 557 FPSSIFNLPGLQTLDLS-RCI----VQLPPETDMMRELRHLIGKL----IGTLPIENLTNLQTLKYVRCK---SWIRVNT 624 (841)
Q Consensus 557 lp~~i~~L~~L~~L~L~-~~~----~~lp~~~~~L~~L~~L~~~~----~~~~~i~~l~~L~~L~l~~~~---~~~~~~l 624 (841)
+|..+.++++|++|+++ .+. ...+..+..+++|+.|.... ..+..+..+++|++|++.+|. ......+
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH
Confidence 55555555555555555 211 12233444455555552211 111124456666666666655 1112234
Q ss_pred ccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeee----------cCCCccCCCCCcccccCCC-CCCCcccc
Q 045150 625 AKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNL----------SDGTVVLPQSSNAFASLQP-LSHCQRLV 693 (841)
Q Consensus 625 ~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~----------~~~~~~~~~~~~~~~~l~~-l~~~~~L~ 693 (841)
..+++|+.|++..+- . ...+. .....+++|+.|++++ |. .+... .+.. ...+++|+
T Consensus 315 ~~~~~L~~L~L~~~~-~---~~~l~-~~~~~~~~L~~L~L~~g~~~~~~~~~~~-------~~~~~-~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 315 QKCPNLEVLETRNVI-G---DRGLE-VLAQYCKQLKRLRIERGADEQGMEDEEG-------LVSQR-GLIALAQGCQELE 381 (592)
T ss_dssp TTCTTCCEEEEEGGG-H---HHHHH-HHHHHCTTCCEEEEECCCCSSTTSSTTC-------CCCHH-HHHHHHHHCTTCS
T ss_pred HhCcCCCEEeccCcc-C---HHHHH-HHHHhCCCCCEEEeecCccccccccccC-------ccCHH-HHHHHHhhCccCe
Confidence 566666666666221 1 11111 3334566677777763 21 11000 0001 23466777
Q ss_pred eeEeccccCC--CCccccccCCCccEEEEE----eccCCCC-----ChhhhhhcccCCeEEEeccc--CCCCCccccceE
Q 045150 694 DLRLTGRMTT--LPKDMHVLLPNLECLSLK----VVLPEEN-----PMPALEMLSNLTILDLNFYR--DSGDPYHEKKLS 760 (841)
Q Consensus 694 ~L~L~~~~~~--~p~~~~~l~~~L~~L~L~----~~~l~~~-----~~~~l~~l~~L~~L~L~~N~--l~~~~~~~~~~~ 760 (841)
+|++..+..+ .+..+...+++|+.|+|+ .+.+++. ....+.++++|+.|+|++|. +++ ..+.
T Consensus 382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~-----~~~~ 456 (592)
T 3ogk_B 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD-----LGLS 456 (592)
T ss_dssp EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH-----HHHH
T ss_pred EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH-----HHHH
Confidence 7777543221 222333324778888886 3345432 12235667788888886421 211 1111
Q ss_pred EcCCCcccccceeccccccCceEE--EEccCccccccccccccccC
Q 045150 761 CRAEGFPLLEILLLDAVEVGIVEW--QVEERAMPMLRGLKIPSDIP 804 (841)
Q Consensus 761 ~~~~~f~~L~~L~l~~~~~~l~~~--~~~~~~~p~L~~L~l~~~c~ 804 (841)
.....+++|+.|++++|. +++. +.....+++|++|+|+ +|+
T Consensus 457 ~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~~~~~L~~L~l~-~n~ 499 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVG--ESDEGLMEFSRGCPNLQKLEMR-GCC 499 (592)
T ss_dssp HHHHSCTTCCEEEECSCC--SSHHHHHHHHTCCTTCCEEEEE-SCC
T ss_pred HHHHhCccceEeeccCCC--CCHHHHHHHHhcCcccCeeecc-CCC
Confidence 112347889999999886 6542 2223568999999999 997
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=4.1e-15 Score=157.37 Aligned_cols=204 Identities=15% Similarity=0.099 Sum_probs=133.3
Q ss_pred CceeeEEEeecCCcccccccccccchhhc--cccCcceeeecCCCcCcc-ccC----cccCCCCCCCeeecC-CcccccC
Q 045150 509 FLLLRVLEIEESGYFSRMLFDNRLHNKKL--GKLIHLKYLGIRGTTFIR-DFP----SSIFNLPGLQTLDLS-RCIVQLP 580 (841)
Q Consensus 509 ~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i--~~L~~L~~L~L~~~~~~~-~lp----~~i~~L~~L~~L~L~-~~~~~lp 580 (841)
++.|+.|++++|. +.+ ..|..+ ..+++|++|+|++| .+. ..| ..+..+++|++|+++ |.+..+|
T Consensus 90 ~~~L~~L~l~~n~------l~~-~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 161 (310)
T 4glp_A 90 YSRLKELTLEDLK------ITG-TMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFS 161 (310)
T ss_dssp HSCCCEEEEESCC------CBS-CCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCC
T ss_pred cCceeEEEeeCCE------ecc-chhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhh
Confidence 4568888888887 654 556666 77888888888888 444 223 234567888888888 6665554
Q ss_pred ccccccccccceecccccccCCccccccccccccccc-ch---hc--cccccccCCCceEEeccCCCCcCcccccHHHHh
Q 045150 581 PETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SW---IR--VNTAKLVNLRELHIVGGDGQSMGEMEFSFESIA 654 (841)
Q Consensus 581 ~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~---~~--~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~ 654 (841)
.. .++.+++|++|++++|. .. .+ ..++.+++|++|++++|..... .......+.
T Consensus 162 ~~------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~ 221 (310)
T 4glp_A 162 CE------------------QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP--TGVCAALAA 221 (310)
T ss_dssp TT------------------SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH--HHHHHHHHH
T ss_pred HH------------------HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch--HHHHHHHHh
Confidence 32 14566777777777775 11 22 2246788899999988874311 111111357
Q ss_pred ccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecccc-CCCCccccccCCCccEEEEEeccCCCCChhhh
Q 045150 655 KLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPKDMHVLLPNLECLSLKVVLPEENPMPAL 733 (841)
Q Consensus 655 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l 733 (841)
.+++|+.|++++|.+.+..|..+. .+..+++|++|++++|. ..+|..+ +++|+.|+|++|.+++. +.+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~------~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~--~~~ 290 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAP------RCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRA--PQP 290 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCS------SCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSC--CCT
T ss_pred cCCCCCEEECCCCCCCccchhhHH------hccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCC--chh
Confidence 889999999999977665443322 22334678888888764 3466655 27888888888887653 235
Q ss_pred hhcccCCeEEEecccCCC
Q 045150 734 EMLSNLTILDLNFYRDSG 751 (841)
Q Consensus 734 ~~l~~L~~L~L~~N~l~~ 751 (841)
..+++|+.|+|++|.++.
T Consensus 291 ~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 291 DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TSCCCCSCEECSSTTTSC
T ss_pred hhCCCccEEECcCCCCCC
Confidence 677888888888876643
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=5.5e-15 Score=154.38 Aligned_cols=198 Identities=17% Similarity=0.113 Sum_probs=98.5
Q ss_pred ccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCcccc-CcccCCCCCCCeeecC-CcccccCcccc
Q 045150 507 KRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDF-PSSIFNLPGLQTLDLS-RCIVQLPPETD 584 (841)
Q Consensus 507 ~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~-~~~~~lp~~~~ 584 (841)
.++++|+.++++++. ++ .+|..+. ++|++|+|++| .+..+ |..+.++++|++|+++ +.+..+|..
T Consensus 7 ~~l~~l~~l~~~~~~------l~--~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-- 73 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN------LT--ALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-- 73 (290)
T ss_dssp ECSTTCCEEECTTSC------CS--SCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--
T ss_pred cccCCccEEECCCCC------CC--cCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC--
Confidence 445555556665555 55 4554433 45556666655 33333 3445556666666665 443333321
Q ss_pred ccccccceecccccccCCccccccccccccccc-chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEE
Q 045150 585 MMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLS 663 (841)
Q Consensus 585 ~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~ 663 (841)
+.+++|++|+++++. ...+..+..+++|+.|++++|... .+.+..+..+++|+.|+
T Consensus 74 ------------------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~-----~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 74 ------------------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-----SLPLGALRGLGELQELY 130 (290)
T ss_dssp ------------------SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCC-----CCCSSTTTTCTTCCEEE
T ss_pred ------------------CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCc-----ccCHHHHcCCCCCCEEE
Confidence 223334444444443 333334445555555555555422 11113455566666666
Q ss_pred eeecCCCccCCCCCcccccCCCCCCCcccceeEecccc-CCCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeE
Q 045150 664 VNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTIL 742 (841)
Q Consensus 664 l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 742 (841)
+++|.+....+ ..+..+++|+.|++++|. ..+|..+...+++|+.|+|++|.++ ..+..+..+++|+.|
T Consensus 131 L~~N~l~~~~~---------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 131 LKGNELKTLPP---------GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200 (290)
T ss_dssp CTTSCCCCCCT---------TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEE
T ss_pred CCCCCCCccCh---------hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeE
Confidence 66664432211 113344556666666543 3345443322366677777766665 334455556667777
Q ss_pred EEecccCC
Q 045150 743 DLNFYRDS 750 (841)
Q Consensus 743 ~L~~N~l~ 750 (841)
+|++|.+.
T Consensus 201 ~L~~Np~~ 208 (290)
T 1p9a_G 201 FLHGNPWL 208 (290)
T ss_dssp ECCSCCBC
T ss_pred EeCCCCcc
Confidence 77666543
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=7.3e-18 Score=184.75 Aligned_cols=242 Identities=18% Similarity=0.159 Sum_probs=156.6
Q ss_pred chhHHhccCceeeEEEeecCCccccccccccc----chhhccccCcceeeecCCCcCcc----ccCccc-------CCCC
Q 045150 501 DLAPLFKRFLLLRVLEIEESGYFSRMLFDNRL----HNKKLGKLIHLKYLGIRGTTFIR----DFPSSI-------FNLP 565 (841)
Q Consensus 501 ~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~----~p~~i~~L~~L~~L~L~~~~~~~----~lp~~i-------~~L~ 565 (841)
.+...+..+++|++|+|++|. +.. . ++..+..+++|++|+|++| .+. .+|..+ .+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~------i~~-~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNT------IGT-EAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSE------ECH-HHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred HHHHHHhcCCCccEEECCCCC------CCH-HHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCC
Confidence 445677889999999999998 663 2 3445778999999999987 333 345444 7889
Q ss_pred CCCeeecC-Ccccc-----cCccccccccccceecccccccCCccccccccccccccc--c----hhccccccc------
Q 045150 566 GLQTLDLS-RCIVQ-----LPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK--S----WIRVNTAKL------ 627 (841)
Q Consensus 566 ~L~~L~L~-~~~~~-----lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~--~----~~~~~l~~l------ 627 (841)
+|++|+|+ |.+.. +|.. +..+++|++|++.+|. . ..+..+..+
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~-------------------l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~ 155 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDF-------------------LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHH-------------------HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccEEECCCCcCCHHHHHHHHHH-------------------HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 99999999 55443 3333 3455677777788776 1 123334445
Q ss_pred ---cCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCC-CCCCCcccceeEeccccC-
Q 045150 628 ---VNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQ-PLSHCQRLVDLRLTGRMT- 702 (841)
Q Consensus 628 ---~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~l~~~~~L~~L~L~~~~~- 702 (841)
++|++|++++|.....+...+. ..+..+++|+.|++++|.+.... ... ... .+..+++|+.|+|++|..
T Consensus 156 ~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~l~~~g---~~~--l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 156 KNAPPLRSIICGRNRLENGSMKEWA-KTFQSHRLLHTVKMVQNGIRPEG---IEH--LLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HTCCCCCEEECCSSCCTGGGHHHHH-HHHHHCTTCCEEECCSSCCCHHH---HHH--HHHTTGGGCTTCCEEECCSSCCH
T ss_pred ccCCCCcEEECCCCCCCcHHHHHHH-HHHHhCCCcCEEECcCCCCCHhH---HHH--HHHHHhhcCCCccEEECcCCCCC
Confidence 8999999988875422222222 46778889999999988543110 000 011 356677888888888643
Q ss_pred -----CCCccccccCCCccEEEEEeccCCCC----Chhhhh--hcccCCeEEEecccCCCCCccccceEEcC-CCccccc
Q 045150 703 -----TLPKDMHVLLPNLECLSLKVVLPEEN----PMPALE--MLSNLTILDLNFYRDSGDPYHEKKLSCRA-EGFPLLE 770 (841)
Q Consensus 703 -----~~p~~~~~l~~~L~~L~L~~~~l~~~----~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~~~~~-~~f~~L~ 770 (841)
.+|..+..+ ++|+.|+|++|.++.. .+..+. .+++|+.|+|++|.+++... ..+.... ..+++|+
T Consensus 230 ~~g~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~--~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 230 HLGSSALAIALKSW-PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV--RTLKTVIDEKMPDLL 306 (386)
T ss_dssp HHHHHHHHHHGGGC-TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH--HHHHHHHHHHCTTCC
T ss_pred cHHHHHHHHHHccC-CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH--HHHHHHHHhcCCCce
Confidence 256666665 8888888888887654 233443 37888888888876543100 0011111 2467888
Q ss_pred ceeccccc
Q 045150 771 ILLLDAVE 778 (841)
Q Consensus 771 ~L~l~~~~ 778 (841)
+|++++|+
T Consensus 307 ~L~l~~N~ 314 (386)
T 2ca6_A 307 FLELNGNR 314 (386)
T ss_dssp EEECTTSB
T ss_pred EEEccCCc
Confidence 88888886
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=4.4e-15 Score=154.36 Aligned_cols=203 Identities=24% Similarity=0.199 Sum_probs=119.8
Q ss_pred cchhhccccCcceeeecCCCcCccccCc-ccCCCCCCCeeecC-CcccccCccccccccccceecccccccCCccccccc
Q 045150 532 LHNKKLGKLIHLKYLGIRGTTFIRDFPS-SIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPIENLTNLQ 609 (841)
Q Consensus 532 ~~p~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~ 609 (841)
.+|..+. ++|++|+|++| .+..+|. .+.++++|++|+++ +.+..++... +..+++|+
T Consensus 21 ~ip~~l~--~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------~~~l~~L~ 79 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA------------------YQSLSHLS 79 (276)
T ss_dssp SCCSSSC--TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTT------------------TTTCTTCC
T ss_pred ccCCCCC--CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHH------------------ccCCcCCC
Confidence 5666553 57899999998 6666654 78889999999998 6555554321 33444455
Q ss_pred cccccccc--chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCC
Q 045150 610 TLKYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLS 687 (841)
Q Consensus 610 ~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~ 687 (841)
+|++.++. ...+..+.. +++|+.|++++|.+....+ ..+.
T Consensus 80 ~L~L~~n~l~~~~~~~~~~-----------------------------l~~L~~L~l~~n~l~~~~~---------~~~~ 121 (276)
T 2z62_A 80 TLILTGNPIQSLALGAFSG-----------------------------LSSLQKLVAVETNLASLEN---------FPIG 121 (276)
T ss_dssp EEECTTCCCCEECTTTTTT-----------------------------CTTCCEEECTTSCCCCSTT---------CCCT
T ss_pred EEECCCCccCccChhhhcC-----------------------------CccccEEECCCCCccccCc---------hhcc
Confidence 55554443 112223444 4455555555443322111 0133
Q ss_pred CCcccceeEeccccC-C--CCccccccCCCccEEEEEeccCCCCChhhhhhcccCC----eEEEecccCCCCCccccceE
Q 045150 688 HCQRLVDLRLTGRMT-T--LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLT----ILDLNFYRDSGDPYHEKKLS 760 (841)
Q Consensus 688 ~~~~L~~L~L~~~~~-~--~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~----~L~L~~N~l~~~~~~~~~~~ 760 (841)
.+++|+.|++++|.. . +|..+..+ ++|+.|+|++|.++...+..+..+++|+ .|++++|.+++...
T Consensus 122 ~l~~L~~L~l~~n~l~~~~l~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~------ 194 (276)
T 2z62_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP------ 194 (276)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT------
T ss_pred cCCCCCEEECcCCccceecCchhhccC-CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc------
Confidence 445555666655432 1 46666665 7888888888877666566666666666 67777776543221
Q ss_pred EcCCCcccccceeccccccCceEEEEc-cCccccccccccccccC
Q 045150 761 CRAEGFPLLEILLLDAVEVGIVEWQVE-ERAMPMLRGLKIPSDIP 804 (841)
Q Consensus 761 ~~~~~f~~L~~L~l~~~~~~l~~~~~~-~~~~p~L~~L~l~~~c~ 804 (841)
......+|+.|++++|. ++.++.. ...+++|++|+++ +++
T Consensus 195 -~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~-~N~ 235 (276)
T 2z62_A 195 -GAFKEIRLKELALDTNQ--LKSVPDGIFDRLTSLQKIWLH-TNP 235 (276)
T ss_dssp -TSSCSCCEEEEECCSSC--CSCCCTTTTTTCCSCCEEECC-SSC
T ss_pred -cccCCCcccEEECCCCc--eeecCHhHhcccccccEEEcc-CCc
Confidence 11123478888888776 7766543 2567788888887 554
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=1.6e-16 Score=174.06 Aligned_cols=276 Identities=16% Similarity=0.080 Sum_probs=170.7
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhh-------ccccCcceeeecCCCc
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKK-------LGKLIHLKYLGIRGTT 552 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~-------i~~L~~L~~L~L~~~~ 552 (841)
.+++++.|.+.++.........+...+..+++|++|+|++|.... +.+ .+|.. +..+++|++|+|++|
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~---l~~-~~~~~~~~l~~~l~~~~~L~~L~Ls~n- 104 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR---VKD-EIPEALRLLLQALLKCPKLHTVRLSDN- 104 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS---CGG-GSHHHHHHHHHHHTTCTTCCEEECCSC-
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc---ccc-chhHHHHHHHHHHhhCCcccEEECCCC-
Confidence 578899999998876432122344557889999999999975100 222 33433 478999999999999
Q ss_pred Cccc-----cCcccCCCCCCCeeecC-Ccccc-----cCccccccccccceecccccccCCccccccccccccccc-c--
Q 045150 553 FIRD-----FPSSIFNLPGLQTLDLS-RCIVQ-----LPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK-S-- 618 (841)
Q Consensus 553 ~~~~-----lp~~i~~L~~L~~L~L~-~~~~~-----lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~-- 618 (841)
.+.. +|..+.++++|++|+|+ |.+.. ++..+..+ ... .. -+..++|++|++.+|. .
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l---~~~--~~-----~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL---AVN--KK-----AKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH---HHH--HH-----HHTCCCCCEEECCSSCCTGG
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH---hhh--hh-----cccCCCCcEEECCCCCCCcH
Confidence 5554 78889999999999999 65542 22222222 000 00 0011567777777765 1
Q ss_pred hhc---cccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCccccee
Q 045150 619 WIR---VNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDL 695 (841)
Q Consensus 619 ~~~---~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L 695 (841)
..+ ..+..+++|++|++++|.....|...+.+..+..+++|+.|+|++|.++... ...+ ...+..+++|+.|
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~~~l--~~~l~~~~~L~~L 249 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSAL--AIALKSWPNLREL 249 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHHH--HHHGGGCTTCCEE
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---HHHH--HHHHccCCCcCEE
Confidence 222 4566788888888888764422222233126677888888888888543110 0011 1124567788888
Q ss_pred EeccccCC------CCccccc-cCCCccEEEEEeccCCC----CChhhh-hhcccCCeEEEecccCCCCCccccceEEcC
Q 045150 696 RLTGRMTT------LPKDMHV-LLPNLECLSLKVVLPEE----NPMPAL-EMLSNLTILDLNFYRDSGDPYHEKKLSCRA 763 (841)
Q Consensus 696 ~L~~~~~~------~p~~~~~-l~~~L~~L~L~~~~l~~----~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 763 (841)
+|++|... +|..+.. .+++|+.|+|++|.++. ..+..+ .++++|+.|+|++|.+++....... -.
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~---l~ 326 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDE---IR 326 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHH---HH
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHH---HH
Confidence 88886432 3444432 13889999999998875 245555 6689999999999877654310011 11
Q ss_pred CCcccccceeccccc
Q 045150 764 EGFPLLEILLLDAVE 778 (841)
Q Consensus 764 ~~f~~L~~L~l~~~~ 778 (841)
..+++++.+.+....
T Consensus 327 ~~l~~~~~~~l~~~d 341 (386)
T 2ca6_A 327 EVFSTRGRGELDELD 341 (386)
T ss_dssp HHHHHHTCCEECCCC
T ss_pred HHhhhcCcchhhhcc
Confidence 235666655555443
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=7.2e-15 Score=149.17 Aligned_cols=129 Identities=16% Similarity=0.099 Sum_probs=74.1
Q ss_pred cccccCCCceEEeccCCCCcCcccccHHHHhccCCcc---eEEeeec-CCCccCCCCCcccccCCCCCCCcccc-eeEec
Q 045150 624 TAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQ---FLSVNLS-DGTVVLPQSSNAFASLQPLSHCQRLV-DLRLT 698 (841)
Q Consensus 624 l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~L~ 698 (841)
+..+++|+.|++++|.... ++ . +..+++|+ .|++++| .+....+ ..+..+++|+ .|+++
T Consensus 101 f~~l~~L~~L~l~~n~l~~-----lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~---------~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-----FP-D-LTKVYSTDIFFILEITDNPYMTSIPV---------NAFQGLCNETLTLKLY 164 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-----CC-C-CTTCCBCCSEEEEEEESCTTCCEECT---------TTTTTTBSSEEEEECC
T ss_pred hCCCCCCCEEeCCCCCCcc-----cc-c-cccccccccccEEECCCCcchhhcCc---------ccccchhcceeEEEcC
Confidence 4455556666666554321 11 1 34444444 6777666 4332111 1234456677 77776
Q ss_pred ccc-CCCCccccccCCCccEEEEEecc-CCCCChhhhhhc-ccCCeEEEecccCCCCCccccceEEcCCCcccccceecc
Q 045150 699 GRM-TTLPKDMHVLLPNLECLSLKVVL-PEENPMPALEML-SNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLD 775 (841)
Q Consensus 699 ~~~-~~~p~~~~~l~~~L~~L~L~~~~-l~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~ 775 (841)
+|. ..+|...... ++|+.|+|++|. ++..++..+..+ ++|+.|+|++|++++.+. ..|++|+.|.+.
T Consensus 165 ~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~---------~~~~~L~~L~l~ 234 (239)
T 2xwt_C 165 NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS---------KGLEHLKELIAR 234 (239)
T ss_dssp SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC---------TTCTTCSEEECT
T ss_pred CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh---------hHhccCceeecc
Confidence 653 3355555555 678888888874 765555667777 788888887776654321 247777777777
Q ss_pred ccc
Q 045150 776 AVE 778 (841)
Q Consensus 776 ~~~ 778 (841)
++.
T Consensus 235 ~~~ 237 (239)
T 2xwt_C 235 NTW 237 (239)
T ss_dssp TC-
T ss_pred Ccc
Confidence 654
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=2.1e-15 Score=156.31 Aligned_cols=206 Identities=20% Similarity=0.162 Sum_probs=145.4
Q ss_pred hccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceecccccccCCcccccccccccc
Q 045150 536 KLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYV 614 (841)
Q Consensus 536 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~ 614 (841)
....+++|+.|++++| .+..++. +..+++|++|+++ +.+..+
T Consensus 36 ~~~~l~~L~~L~l~~~-~i~~~~~-l~~l~~L~~L~l~~n~l~~~----------------------------------- 78 (272)
T 3rfs_A 36 TQNELNSIDQIIANNS-DIKSVQG-IQYLPNVRYLALGGNKLHDI----------------------------------- 78 (272)
T ss_dssp CHHHHTTCCEEECTTS-CCCCCTT-GGGCTTCCEEECTTSCCCCC-----------------------------------
T ss_pred ccccccceeeeeeCCC-Ccccccc-cccCCCCcEEECCCCCCCCc-----------------------------------
Confidence 3556777777777777 5665553 6677777777777 433222
Q ss_pred cccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccce
Q 045150 615 RCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVD 694 (841)
Q Consensus 615 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~ 694 (841)
..+..+++|+.|++++|... ......+..+++|+.|++++|.+.+..+ ..+..+++|+.
T Consensus 79 -------~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------~~~~~l~~L~~ 137 (272)
T 3rfs_A 79 -------SALKELTNLTYLILTGNQLQ-----SLPNGVFDKLTNLKELVLVENQLQSLPD---------GVFDKLTNLTY 137 (272)
T ss_dssp -------GGGTTCTTCCEEECTTSCCC-----CCCTTTTTTCTTCCEEECTTSCCCCCCT---------TTTTTCTTCCE
T ss_pred -------hhhcCCCCCCEEECCCCccC-----ccChhHhcCCcCCCEEECCCCcCCccCH---------HHhccCCCCCE
Confidence 13345556666666666532 1121456778899999999886553222 12566789999
Q ss_pred eEecccc-CCCCcc-ccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccce
Q 045150 695 LRLTGRM-TTLPKD-MHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEIL 772 (841)
Q Consensus 695 L~L~~~~-~~~p~~-~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L 772 (841)
|++++|. ..+|.. +..+ ++|+.|+|++|.+++..+..++.+++|+.|+|++|.+++.... ....+++|+.|
T Consensus 138 L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L 210 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKL-TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG------VFDRLTSLQYI 210 (272)
T ss_dssp EECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCEE
T ss_pred EECCCCccCccCHHHhccC-ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH------HHhCCcCCCEE
Confidence 9999974 445554 3455 9999999999999887777789999999999999988754321 23568999999
Q ss_pred eccccccCceEEEEccCccccccccccccccCCC-CCCcccccc
Q 045150 773 LLDAVEVGIVEWQVEERAMPMLRGLKIPSDIPNL-NIPERLRSI 815 (841)
Q Consensus 773 ~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~~L-~lp~~l~~l 815 (841)
++++|+ +. +.+|+|+.|.+. .+.-- .+|..+..+
T Consensus 211 ~l~~N~--~~------~~~~~l~~l~~~-~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 211 WLHDNP--WD------CTCPGIRYLSEW-INKHSGVVRNSAGSV 245 (272)
T ss_dssp ECCSSC--BC------CCTTTTHHHHHH-HHHTGGGBBCTTSCB
T ss_pred EccCCC--cc------ccCcHHHHHHHH-HHhCCCcccCccccc
Confidence 999998 33 568899999998 55433 888887766
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.6e-14 Score=149.45 Aligned_cols=195 Identities=22% Similarity=0.238 Sum_probs=137.3
Q ss_pred cceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceecccccccCCccccccccccccccc-ch
Q 045150 542 HLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SW 619 (841)
Q Consensus 542 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~ 619 (841)
.+++++++++ .+..+|..+. .+|++|+++ +.+..+|... ++.+++|++|++.++. ..
T Consensus 17 ~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~------------------~~~l~~L~~L~l~~n~l~~ 75 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKA------------------FHRLTKLRLLYLNDNKLQT 75 (270)
T ss_dssp TTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTS------------------SSSCTTCCEEECCSSCCSC
T ss_pred CCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHH------------------hcCCCCCCEEECCCCccCe
Confidence 5789999999 7888998665 689999999 7777666521 4455666666666665 22
Q ss_pred hc-cccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEec
Q 045150 620 IR-VNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLT 698 (841)
Q Consensus 620 ~~-~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~ 698 (841)
.+ ..+..+++|++|++++|... .+....+..+++|+.|++++|.+....+ ..+..+++|+.|+++
T Consensus 76 i~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 76 LPAGIFKELKNLETLWVTDNKLQ-----ALPIGVFDQLVNLAELRLDRNQLKSLPP---------RVFDSLTKLTYLSLG 141 (270)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCC-----CCCTTTTTTCSSCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECC
T ss_pred eChhhhcCCCCCCEEECCCCcCC-----cCCHhHcccccCCCEEECCCCccCeeCH---------HHhCcCcCCCEEECC
Confidence 33 34577889999999888643 2222456778899999999886544322 124567788888888
Q ss_pred ccc-CCCCcc-ccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccc
Q 045150 699 GRM-TTLPKD-MHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDA 776 (841)
Q Consensus 699 ~~~-~~~p~~-~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~ 776 (841)
+|. ..+|.. +..+ ++|+.|+|++|.++...+..+..+++|+.|+|++|.+++.... ....+++|+.|++++
T Consensus 142 ~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 142 YNELQSLPKGVFDKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG------AFDSLEKLKMLQLQE 214 (270)
T ss_dssp SSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCEEECCS
T ss_pred CCcCCccCHhHccCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH------HhccccCCCEEEecC
Confidence 864 345554 3444 8888999988888776666788888888999888877643311 124577888888888
Q ss_pred cc
Q 045150 777 VE 778 (841)
Q Consensus 777 ~~ 778 (841)
|+
T Consensus 215 N~ 216 (270)
T 2o6q_A 215 NP 216 (270)
T ss_dssp SC
T ss_pred CC
Confidence 77
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=1.6e-14 Score=150.89 Aligned_cols=199 Identities=23% Similarity=0.158 Sum_probs=147.2
Q ss_pred ccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceecccccccCCccccccccccccc
Q 045150 537 LGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVR 615 (841)
Q Consensus 537 i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~ 615 (841)
++++++|+.++++++ .+..+|..+. ++|++|+++ +.+..++... +..+++|+.|++.+
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~------------------~~~l~~L~~L~L~~ 64 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLAT------------------LMPYTRLTQLNLDR 64 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGG------------------GTTCTTCCEEECTT
T ss_pred ccccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHH------------------hhcCCCCCEEECCC
Confidence 667889999999998 7889998765 789999999 6666554321 44556666677777
Q ss_pred ccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCccccee
Q 045150 616 CKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDL 695 (841)
Q Consensus 616 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L 695 (841)
+.-......+.+++|+.|++++|... .++ ..+..+++|+.|++++|.+....+ ..+..+++|+.|
T Consensus 65 n~l~~~~~~~~l~~L~~L~Ls~N~l~-----~l~-~~~~~l~~L~~L~l~~N~l~~l~~---------~~~~~l~~L~~L 129 (290)
T 1p9a_G 65 AELTKLQVDGTLPVLGTLDLSHNQLQ-----SLP-LLGQTLPALTVLDVSFNRLTSLPL---------GALRGLGELQEL 129 (290)
T ss_dssp SCCCEEECCSCCTTCCEEECCSSCCS-----SCC-CCTTTCTTCCEEECCSSCCCCCCS---------STTTTCTTCCEE
T ss_pred CccCcccCCCCCCcCCEEECCCCcCC-----cCc-hhhccCCCCCEEECCCCcCcccCH---------HHHcCCCCCCEE
Confidence 66222233478899999999998744 233 556788999999999996654322 235667889999
Q ss_pred Eecccc-CCCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceec
Q 045150 696 RLTGRM-TTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLL 774 (841)
Q Consensus 696 ~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l 774 (841)
++++|. ..+|......+++|+.|+|++|.++..+...+..+++|+.|+|++|+++..+. ....+++|+.|.+
T Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~-------~~~~~~~L~~l~L 202 (290)
T 1p9a_G 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK-------GFFGSHLLPFAFL 202 (290)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCCCSEEEC
T ss_pred ECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccCh-------hhcccccCCeEEe
Confidence 999874 44665544334999999999999987777778899999999999998774432 2234668999999
Q ss_pred cccc
Q 045150 775 DAVE 778 (841)
Q Consensus 775 ~~~~ 778 (841)
++|+
T Consensus 203 ~~Np 206 (290)
T 1p9a_G 203 HGNP 206 (290)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 9887
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=6.3e-16 Score=165.96 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=41.3
Q ss_pred ccceeEecccc-----CCCCccccccCCCccEEEEEecc-CCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCC
Q 045150 691 RLVDLRLTGRM-----TTLPKDMHVLLPNLECLSLKVVL-PEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAE 764 (841)
Q Consensus 691 ~L~~L~L~~~~-----~~~p~~~~~l~~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~ 764 (841)
+|++|++++|. ..+|..+..+ ++|+.|+|++|. +++..+..++.+++|+.|+|++|. ......+ ....
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~----~~~~~~~-~~l~ 269 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY----DIIPETL-LELG 269 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT----TCCGGGG-GGGG
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC----CCCHHHH-HHHh
Confidence 45555555442 1133333343 666666666665 444555566666677777776652 1111110 1123
Q ss_pred Ccccccceecccc
Q 045150 765 GFPLLEILLLDAV 777 (841)
Q Consensus 765 ~f~~L~~L~l~~~ 777 (841)
.+++|+.|++++|
T Consensus 270 ~~~~L~~L~l~~~ 282 (336)
T 2ast_B 270 EIPTLKTLQVFGI 282 (336)
T ss_dssp GCTTCCEEECTTS
T ss_pred cCCCCCEEeccCc
Confidence 4666666666655
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=1.7e-14 Score=155.28 Aligned_cols=234 Identities=15% Similarity=0.062 Sum_probs=140.3
Q ss_pred eEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCc-ccCCCCCCCeeecC-Ccccc-cCcc-cccccc
Q 045150 513 RVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPS-SIFNLPGLQTLDLS-RCIVQ-LPPE-TDMMRE 588 (841)
Q Consensus 513 r~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~-~~~~~-lp~~-~~~L~~ 588 (841)
++++.++++ ++ .+|..+ .+++++|+|++| .++.+|. .+.+|++|++|+|+ |.+.+ +|.. +.++++
T Consensus 12 ~~v~C~~~~------Lt--~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 12 RVFLCQESK------VT--EIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp TEEEEESTT------CC--SCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred CEEEecCCC------CC--ccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 456666666 66 677655 356777888877 6777765 46778888888887 55433 4442 334444
Q ss_pred ccceecccccccCCccccccccccccccc--chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeee
Q 045150 589 LRHLIGKLIGTLPIENLTNLQTLKYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNL 666 (841)
Q Consensus 589 L~~L~~~~~~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~ 666 (841)
|.++. .+..+. ...+..+..+++|+.|++++|..... + ...+....++..|++.+
T Consensus 81 l~~~l------------------~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~---~--~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 81 LHEIR------------------IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL---P--DVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp CCEEE------------------EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC---C--CCTTCCBSSCEEEEEES
T ss_pred hhhhh------------------cccCCcccccCchhhhhccccccccccccccccC---C--chhhcccchhhhhhhcc
Confidence 33321 111111 12234456667777777777653311 1 02223344566666655
Q ss_pred cCCCccCCCCCcccccCCCCCC-CcccceeEecccc-CCCCccccccCCCccEEEEEe-ccCCCCChhhhhhcccCCeEE
Q 045150 667 SDGTVVLPQSSNAFASLQPLSH-CQRLVDLRLTGRM-TTLPKDMHVLLPNLECLSLKV-VLPEENPMPALEMLSNLTILD 743 (841)
Q Consensus 667 ~~~~~~~~~~~~~~~~l~~l~~-~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~-~~l~~~~~~~l~~l~~L~~L~ 743 (841)
+.... .++. ..+.. ...++.|++++|. ..+|...+.. .+|+.|.+.+ |.+...+...|+++++|+.|+
T Consensus 138 ~~~i~-------~l~~-~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 138 NINIH-------TIER-NSFVGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp CTTCC-------EECT-TSSTTSBSSCEEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred ccccc-------cccc-cchhhcchhhhhhccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence 42111 1110 11222 2357778888764 4466666665 7788888875 566555556788888999999
Q ss_pred EecccCCCCCccccceEEcCCCcccccceeccccccCceEEEEccCccccccccccc
Q 045150 744 LNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQVEERAMPMLRGLKIP 800 (841)
Q Consensus 744 L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~ 800 (841)
|++|+++..+ ...|.+|+.|.+.++. +++.+|. ...+++|+.+++.
T Consensus 209 Ls~N~l~~lp---------~~~~~~L~~L~~l~~~-~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 209 ISRTRIHSLP---------SYGLENLKKLRARSTY-NLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp CTTSCCCCCC---------SSSCTTCCEEECTTCT-TCCCCCC-TTTCCSCCEEECS
T ss_pred cCCCCcCccC---------hhhhccchHhhhccCC-CcCcCCC-chhCcChhhCcCC
Confidence 9888776543 2357778888877777 7887763 5678888888876
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=8.8e-16 Score=166.39 Aligned_cols=248 Identities=11% Similarity=0.087 Sum_probs=147.4
Q ss_pred hhHHhccCceeeEEEeecCCcccccccccccch----hhccccC-cceeeecCCCcCcccc-CcccCCC-----CCCCee
Q 045150 502 LAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHN----KKLGKLI-HLKYLGIRGTTFIRDF-PSSIFNL-----PGLQTL 570 (841)
Q Consensus 502 ~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p----~~i~~L~-~L~~L~L~~~~~~~~l-p~~i~~L-----~~L~~L 570 (841)
.+.++...++|++|+|++|. +++ ..+ ..+..++ +|++|+|++| .+... +..+..+ ++|++|
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~------l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L 85 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN------LYS-ISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSL 85 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC------GGG-SCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred HHHHHhCCCCceEEEccCCC------CCh-HHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEE
Confidence 34455555668888888887 653 222 5666777 7888888888 45433 4445543 788888
Q ss_pred ecC-CcccccCc-cccccccccceecccccccCCccc-cccccccccccc--chhc----ccccc-ccCCCceEEeccCC
Q 045150 571 DLS-RCIVQLPP-ETDMMRELRHLIGKLIGTLPIENL-TNLQTLKYVRCK--SWIR----VNTAK-LVNLRELHIVGGDG 640 (841)
Q Consensus 571 ~L~-~~~~~lp~-~~~~L~~L~~L~~~~~~~~~i~~l-~~L~~L~l~~~~--~~~~----~~l~~-l~~L~~L~l~~~~~ 640 (841)
+|+ |.+...+. .+... +..+ ++|++|++++|. ...+ ..+.. .++|++|++++|..
T Consensus 86 ~Ls~n~l~~~~~~~l~~~---------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 86 NLSGNFLSYKSSDELVKT---------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp ECCSSCGGGSCHHHHHHH---------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred ECcCCcCChHHHHHHHHH---------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 888 55544332 11111 1222 456666666665 1111 22333 25788888888765
Q ss_pred CCcCcccccHHHHhccC-CcceEEeeecCCCccCCCCCcccccCCCCCCC-cccceeEeccccCC------CCccccccC
Q 045150 641 QSMGEMEFSFESIAKLK-NLQFLSVNLSDGTVVLPQSSNAFASLQPLSHC-QRLVDLRLTGRMTT------LPKDMHVLL 712 (841)
Q Consensus 641 ~~~g~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~L~~L~L~~~~~~------~p~~~~~l~ 712 (841)
...|...+. ..+..++ +|+.|++++|.+....+..+.. .+..+ ++|+.|+|++|... ++..+...+
T Consensus 151 ~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~-----~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~ 224 (362)
T 3goz_A 151 GIKSSDELI-QILAAIPANVNSLNLRGNNLASKNCAELAK-----FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224 (362)
T ss_dssp GGSCHHHHH-HHHHTSCTTCCEEECTTSCGGGSCHHHHHH-----HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSC
T ss_pred CHHHHHHHH-HHHhcCCccccEeeecCCCCchhhHHHHHH-----HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCC
Confidence 433333333 5555555 8888888888654432211111 12334 47888888876422 344454544
Q ss_pred CCccEEEEEeccCCCCChhh----hhhcccCCeEEEecccCCCCCcc-ccceEEcCCCcccccceeccccc
Q 045150 713 PNLECLSLKVVLPEENPMPA----LEMLSNLTILDLNFYRDSGDPYH-EKKLSCRAEGFPLLEILLLDAVE 778 (841)
Q Consensus 713 ~~L~~L~L~~~~l~~~~~~~----l~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~~~f~~L~~L~l~~~~ 778 (841)
++|+.|+|++|.+++..... +..+++|+.|+|++|.+.+.... ...+......+++|+.|++++|.
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 68999999999987765533 45678999999998875443321 11122233467788889999887
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=8e-15 Score=157.28 Aligned_cols=134 Identities=18% Similarity=0.268 Sum_probs=59.4
Q ss_pred cccccccccccccc-c-c--hhcccccccc-CCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecC-CCccCCCC
Q 045150 603 ENLTNLQTLKYVRC-K-S--WIRVNTAKLV-NLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSD-GTVVLPQS 676 (841)
Q Consensus 603 ~~l~~L~~L~l~~~-~-~--~~~~~l~~l~-~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~ 676 (841)
..+++|++|++.+| . . ..+..+..++ +|++|++++|..... ...+. ..+.++++|+.|++++|. ++..
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~-~~~l~-~~~~~~~~L~~L~l~~~~~l~~~---- 238 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ-KSDLS-TLVRRCPNLVHLDLSDSVMLKND---- 238 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC-HHHHH-HHHHHCTTCSEEECTTCTTCCGG----
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC-HHHHH-HHHhhCCCCCEEeCCCCCcCCHH----
Confidence 34455555555555 3 1 1344455566 666666665531100 11222 444556666666666653 2111
Q ss_pred CcccccCCCCCCCcccceeEeccccCCCCc---cccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCC
Q 045150 677 SNAFASLQPLSHCQRLVDLRLTGRMTTLPK---DMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSG 751 (841)
Q Consensus 677 ~~~~~~l~~l~~~~~L~~L~L~~~~~~~p~---~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 751 (841)
....+..+++|+.|++++|....+. .+..+ ++|+.|+|++| ++......+. .+|..|++++|++++
T Consensus 239 -----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 239 -----CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI-PTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTT 307 (336)
T ss_dssp -----GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC-TTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCC
T ss_pred -----HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC-CCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCcc
Confidence 1112334455666666554322222 22332 55666666555 3332222221 124444455555443
No 94
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=4.4e-16 Score=181.19 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=66.0
Q ss_pred CCcccceeEec--c-----ccCCCCc--c----ccccCCCccEEEEEeccCCCCChhhhhh-cccCCeEEEecccCCCCC
Q 045150 688 HCQRLVDLRLT--G-----RMTTLPK--D----MHVLLPNLECLSLKVVLPEENPMPALEM-LSNLTILDLNFYRDSGDP 753 (841)
Q Consensus 688 ~~~~L~~L~L~--~-----~~~~~p~--~----~~~l~~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~L~~N~l~~~~ 753 (841)
.+++|+.|+++ + +....|. . +.. +++|+.|+|++ .+++..+..++. +++|+.|+|++|.+++.
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~- 471 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH-CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL- 471 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH-CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHH-
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhh-CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHH-
Confidence 36677777777 2 1222221 1 222 37788888866 555544555555 78888888887654321
Q ss_pred ccccceEEcCCCcccccceeccccccCceEEEE--ccCccccccccccccccCC
Q 045150 754 YHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQV--EERAMPMLRGLKIPSDIPN 805 (841)
Q Consensus 754 ~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~--~~~~~p~L~~L~l~~~c~~ 805 (841)
.+......+++|+.|++++|+ +++... ....+|+|++|+++ +|+.
T Consensus 472 ----~~~~l~~~~~~L~~L~L~~n~--~~~~~~~~~~~~l~~L~~L~l~-~~~~ 518 (594)
T 2p1m_B 472 ----GMHHVLSGCDSLRKLEIRDCP--FGDKALLANASKLETMRSLWMS-SCSV 518 (594)
T ss_dssp ----HHHHHHHHCTTCCEEEEESCS--CCHHHHHHTGGGGGGSSEEEEE-SSCC
T ss_pred ----HHHHHHhcCCCcCEEECcCCC--CcHHHHHHHHHhCCCCCEEeee-CCCC
Confidence 111111347899999999997 443322 13458899999999 8875
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=4e-14 Score=147.95 Aligned_cols=60 Identities=17% Similarity=0.146 Sum_probs=37.2
Q ss_pred ccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-Cccc
Q 045150 507 KRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIV 577 (841)
Q Consensus 507 ~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~ 577 (841)
..+++|+.|++++|. +. .++ .+..+++|++|+|++| .+..+|. +.++++|++|+++ |.+.
T Consensus 43 ~~l~~L~~L~l~~~~------i~--~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 43 NELNSIDQIIANNSD------IK--SVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HHHHTCCEEECTTSC------CC--CCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred hhcCcccEEEccCCC------cc--cCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCC
Confidence 345666667776666 55 443 3666667777777766 5555555 6666677777766 4433
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=3.4e-15 Score=161.72 Aligned_cols=257 Identities=13% Similarity=0.071 Sum_probs=167.1
Q ss_pred EEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccC-----cccCCCC-CCCeeecC-CcccccC-ccccc
Q 045150 514 VLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFP-----SSIFNLP-GLQTLDLS-RCIVQLP-PETDM 585 (841)
Q Consensus 514 ~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp-----~~i~~L~-~L~~L~L~-~~~~~lp-~~~~~ 585 (841)
.++++.+. +.+ .+|..+....+|++|+|++| .+...+ ..+.+++ +|++|+|+ |.+.... ..+..
T Consensus 2 ~~~ls~n~------~~~-~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 73 (362)
T 3goz_A 2 NYKLTLHP------GSN-PVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73 (362)
T ss_dssp EEECCCCT------TCC-HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred cccccccc------chH-HHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHH
Confidence 35677777 764 66666666777999999999 677665 5677888 99999999 6665442 22322
Q ss_pred cccccceecccccccCCcc-ccccccccccccc--chhcc----ccccc-cCCCceEEeccCCCCcCcccccHHHHhcc-
Q 045150 586 MRELRHLIGKLIGTLPIEN-LTNLQTLKYVRCK--SWIRV----NTAKL-VNLRELHIVGGDGQSMGEMEFSFESIAKL- 656 (841)
Q Consensus 586 L~~L~~L~~~~~~~~~i~~-l~~L~~L~l~~~~--~~~~~----~l~~l-~~L~~L~l~~~~~~~~g~~~~~~~~l~~l- 656 (841)
+ +.. .++|++|++++|. ...+. .+..+ ++|+.|++++|.....+...+. ..+..+
T Consensus 74 ~---------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-~~l~~~~ 137 (362)
T 3goz_A 74 I---------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK-QAFSNLP 137 (362)
T ss_dssp H---------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH-HHHTTSC
T ss_pred H---------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH-HHHHhCC
Confidence 1 112 2678888888887 22223 24445 8999999999985533222222 344453
Q ss_pred CCcceEEeeecCCCccCCCCCcccccCCCCCCCc-ccceeEeccccCC--CCccc----cccCCCccEEEEEeccCCCCC
Q 045150 657 KNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQ-RLVDLRLTGRMTT--LPKDM----HVLLPNLECLSLKVVLPEENP 729 (841)
Q Consensus 657 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~L~~L~L~~~~~~--~p~~~----~~l~~~L~~L~L~~~~l~~~~ 729 (841)
++|+.|++++|.+....+..+. ..+..++ +|++|++++|... .+..+ ...+++|+.|+|++|.++...
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~-----~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELI-----QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHH-----HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred CceeEEEccCCcCCHHHHHHHH-----HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 6999999999965532111110 1123333 8999999997532 22222 223259999999999987644
Q ss_pred h----hhhhh-cccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEE--------ccCccccccc
Q 045150 730 M----PALEM-LSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQV--------EERAMPMLRG 796 (841)
Q Consensus 730 ~----~~l~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~--------~~~~~p~L~~ 796 (841)
. ..+.. .++|+.|+|++|.+++.... .+......+++|+.|++++|. +..+.. ....+++|+.
T Consensus 213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--~l~~~~~~l~~L~~L~L~~n~--l~~i~~~~~~~l~~~~~~l~~L~~ 288 (362)
T 3goz_A 213 YAELAYIFSSIPNHVVSLNLCLNCLHGPSLE--NLKLLKDSLKHLQTVYLDYDI--VKNMSKEQCKALGAAFPNIQKIIL 288 (362)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSSCCCCCCHH--HHHHTTTTTTTCSEEEEEHHH--HTTCCHHHHHHHHTTSTTCCEEEE
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCcHHHH--HHHHHHhcCCCccEEEeccCC--ccccCHHHHHHHHHHhccCCceEE
Confidence 3 34555 45999999999987654321 112234568899999999986 444321 2346788999
Q ss_pred cccccccC
Q 045150 797 LKIPSDIP 804 (841)
Q Consensus 797 L~l~~~c~ 804 (841)
|+++ +++
T Consensus 289 LdL~-~N~ 295 (362)
T 3goz_A 289 VDKN-GKE 295 (362)
T ss_dssp ECTT-SCB
T ss_pred EecC-CCc
Confidence 9998 553
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=3.7e-14 Score=150.06 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=41.7
Q ss_pred ceeeEEEeecCCcccccccccccchh--hccccCcceeeecCCCcCccccCccc--CCCCCCCeeecC-Cccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHNK--KLGKLIHLKYLGIRGTTFIRDFPSSI--FNLPGLQTLDLS-RCIV 577 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p~--~i~~L~~L~~L~L~~~~~~~~lp~~i--~~L~~L~~L~L~-~~~~ 577 (841)
..++.|.+.++. +....+.. .+..+++|++|+|++|......|..+ .++++|++|+++ +.+.
T Consensus 64 ~~l~~l~l~~~~------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~ 130 (310)
T 4glp_A 64 LRVRRLTVGAAQ------VPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA 130 (310)
T ss_dssp CCCCEEEECSCC------CBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS
T ss_pred cceeEEEEeCCc------CCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccccc
Confidence 346778888877 54212221 12345679999999995455677777 889999999998 5544
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=4.1e-14 Score=162.36 Aligned_cols=171 Identities=19% Similarity=0.179 Sum_probs=78.6
Q ss_pred cCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCcccccc
Q 045150 508 RFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMM 586 (841)
Q Consensus 508 ~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L 586 (841)
.+++|+.|++++|. +. .+| .+..|++|++|+|++| .+..+|. +..|++|++|+|+ |.+..+| .
T Consensus 41 ~L~~L~~L~l~~n~------i~--~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~---- 104 (605)
T 1m9s_A 41 ELNSIDQIIANNSD------IK--SVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLS-S---- 104 (605)
T ss_dssp HHTTCCCCBCTTCC------CC--CCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCT-T----
T ss_pred cCCCCCEEECcCCC------CC--CCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCCh-h----
Confidence 34445555555555 44 333 3455555555555555 4444443 5555555555555 3333322 1
Q ss_pred ccccceecccccccCCcccccccccccccccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeee
Q 045150 587 RELRHLIGKLIGTLPIENLTNLQTLKYVRCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNL 666 (841)
Q Consensus 587 ~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~ 666 (841)
+..+++|+.|++++|.-..+..+..+++|+.|+|++|..... ..+..+++|+.|+|++
T Consensus 105 ---------------l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-------~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 105 ---------------LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-------TVLSRLTKLDTLSLED 162 (605)
T ss_dssp ---------------STTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-------GGGGSCTTCSEEECCS
T ss_pred ---------------hccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-------hhhcccCCCCEEECcC
Confidence 333444444444444422223455555555555555542211 3344555555555555
Q ss_pred cCCCccCCCCCcccccCCCCCCCcccceeEeccccCCCCccccccCCCccEEEEEeccCCCC
Q 045150 667 SDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTTLPKDMHVLLPNLECLSLKVVLPEEN 728 (841)
Q Consensus 667 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~ 728 (841)
|.+.+.. .+..+++|+.|+|++|...-...+..+ ++|+.|+|++|.+...
T Consensus 163 N~l~~~~-----------~l~~l~~L~~L~Ls~N~i~~l~~l~~l-~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 163 NQISDIV-----------PLAGLTKLQNLYLSKNHISDLRALAGL-KNLDVLELFSQECLNK 212 (605)
T ss_dssp SCCCCCG-----------GGTTCTTCCEEECCSSCCCBCGGGTTC-TTCSEEECCSEEEECC
T ss_pred CcCCCch-----------hhccCCCCCEEECcCCCCCCChHHccC-CCCCEEEccCCcCcCC
Confidence 5332211 133444555555555432211233333 5555555555555443
No 99
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.47 E-value=8.4e-14 Score=141.25 Aligned_cols=192 Identities=15% Similarity=0.155 Sum_probs=125.4
Q ss_pred eeeEEEeecCCcccccccccccchh-hccccCcceeeecCCCcCccccCc-ccCCCCCCCeeecC--CcccccCcccccc
Q 045150 511 LLRVLEIEESGYFSRMLFDNRLHNK-KLGKLIHLKYLGIRGTTFIRDFPS-SIFNLPGLQTLDLS--RCIVQLPPETDMM 586 (841)
Q Consensus 511 ~Lr~L~L~~~~~~~~~~l~~~~~p~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~--~~~~~lp~~~~~L 586 (841)
.|++|++++|. ++ .+|. .+..+++|++|++++|..+..+|. .+.++++|++|+++ +.+..+|...
T Consensus 32 ~l~~L~l~~n~------l~--~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~--- 100 (239)
T 2xwt_C 32 STQTLKLIETH------LR--TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA--- 100 (239)
T ss_dssp TCCEEEEESCC------CS--EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS---
T ss_pred cccEEEEeCCc------ce--EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH---
Confidence 67888888887 76 4543 677788888888888832666664 57788888888887 2444555321
Q ss_pred ccccceecccccccCCccccccccccccccc-chhccccccccCCC---ceEEecc-CCCCcCcccccHHHHhccCCcc-
Q 045150 587 RELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLR---ELHIVGG-DGQSMGEMEFSFESIAKLKNLQ- 660 (841)
Q Consensus 587 ~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~---~L~l~~~-~~~~~g~~~~~~~~l~~l~~L~- 660 (841)
+..+++|++|++.+|. ...+ .+..+++|+ .|++++| ... .+....+..+++|+
T Consensus 101 ---------------f~~l~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~-----~i~~~~~~~l~~L~~ 159 (239)
T 2xwt_C 101 ---------------LKELPLLKFLGIFNTGLKMFP-DLTKVYSTDIFFILEITDNPYMT-----SIPVNAFQGLCNETL 159 (239)
T ss_dssp ---------------EECCTTCCEEEEEEECCCSCC-CCTTCCBCCSEEEEEEESCTTCC-----EECTTTTTTTBSSEE
T ss_pred ---------------hCCCCCCCEEeCCCCCCcccc-ccccccccccccEEECCCCcchh-----hcCcccccchhccee
Confidence 3344555555555555 2222 256666666 8888877 432 22224577788899
Q ss_pred eEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccc--cCCCCccccccC-CCccEEEEEeccCCCCChhhhhhcc
Q 045150 661 FLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGR--MTTLPKDMHVLL-PNLECLSLKVVLPEENPMPALEMLS 737 (841)
Q Consensus 661 ~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~--~~~~p~~~~~l~-~~L~~L~L~~~~l~~~~~~~l~~l~ 737 (841)
.|++++|.+.. +|. ..+.. ++|+.|++++| ...+|......+ ++|+.|+|++|.++..+.. .++
T Consensus 160 ~L~l~~n~l~~-i~~--------~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~ 226 (239)
T 2xwt_C 160 TLKLYNNGFTS-VQG--------YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLE 226 (239)
T ss_dssp EEECCSCCCCE-ECT--------TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCT
T ss_pred EEEcCCCCCcc-cCH--------hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---Hhc
Confidence 99998885542 221 11223 57999999987 444655444445 7899999999998754433 678
Q ss_pred cCCeEEEecc
Q 045150 738 NLTILDLNFY 747 (841)
Q Consensus 738 ~L~~L~L~~N 747 (841)
+|+.|+++++
T Consensus 227 ~L~~L~l~~~ 236 (239)
T 2xwt_C 227 HLKELIARNT 236 (239)
T ss_dssp TCSEEECTTC
T ss_pred cCceeeccCc
Confidence 8999998653
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=5.5e-14 Score=161.29 Aligned_cols=190 Identities=20% Similarity=0.155 Sum_probs=143.0
Q ss_pred eeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccc
Q 045150 511 LLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMREL 589 (841)
Q Consensus 511 ~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L 589 (841)
.+..+.+..+. +. .++ .+..|.+|++|++++| .+..+| .+..|++|++|+|+ |.+..+|. +
T Consensus 22 ~l~~l~l~~~~------i~--~~~-~~~~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l------ 83 (605)
T 1m9s_A 22 ETIKDNLKKKS------VT--DAV-TQNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-L------ 83 (605)
T ss_dssp HHHHHHTTCSC------TT--SEE-CHHHHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-G------
T ss_pred HHHHHhccCCC------cc--ccc-chhcCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCCCCChh-h------
Confidence 34455666666 54 232 3678999999999999 788887 48999999999999 76666654 3
Q ss_pred cceecccccccCCcccccccccccccccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCC
Q 045150 590 RHLIGKLIGTLPIENLTNLQTLKYVRCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDG 669 (841)
Q Consensus 590 ~~L~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~ 669 (841)
..+++|+.|++.+|.-..+..+..+++|+.|++++|.... + ..+..+++|+.|+|++|.+
T Consensus 84 -------------~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-----l--~~l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 84 -------------TNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD-----I--NGLVHLPQLESLYLGNNKI 143 (605)
T ss_dssp -------------GGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC-----C--GGGGGCTTCSEEECCSSCC
T ss_pred -------------ccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC-----C--ccccCCCccCEEECCCCcc
Confidence 4455666666666663334578899999999999987442 1 4678899999999999955
Q ss_pred CccCCCCCcccccCCCCCCCcccceeEeccccCC-CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEeccc
Q 045150 670 TVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT-LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYR 748 (841)
Q Consensus 670 ~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~ 748 (841)
.. +..+..+++|+.|+|++|... ++. +..+ ++|+.|+|++|.+.+. +.+..|++|+.|+|++|.
T Consensus 144 ~~-----------l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l-~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 144 TD-----------ITVLSRLTKLDTLSLEDNQISDIVP-LAGL-TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CC-----------CGGGGSCTTCSEEECCSSCCCCCGG-GTTC-TTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEE
T ss_pred CC-----------chhhcccCCCCEEECcCCcCCCchh-hccC-CCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCc
Confidence 43 234667889999999997543 444 6665 9999999999998653 578999999999999987
Q ss_pred CCCCC
Q 045150 749 DSGDP 753 (841)
Q Consensus 749 l~~~~ 753 (841)
+.+.+
T Consensus 209 l~~~p 213 (605)
T 1m9s_A 209 CLNKP 213 (605)
T ss_dssp EECCC
T ss_pred CcCCc
Confidence 76543
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.46 E-value=2.6e-13 Score=138.65 Aligned_cols=175 Identities=18% Similarity=0.206 Sum_probs=96.2
Q ss_pred eeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCcccc-CcccCCCCCCCeeecC-CcccccCcccccccc
Q 045150 511 LLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDF-PSSIFNLPGLQTLDLS-RCIVQLPPETDMMRE 588 (841)
Q Consensus 511 ~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~ 588 (841)
..++++++++. ++ .+|..+. .+|++|+|++| .+..+ |..+.++++|++|+|+ +.+..++...
T Consensus 15 ~~~~l~~~~~~------l~--~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----- 78 (251)
T 3m19_A 15 GKKEVDCQGKS------LD--SVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV----- 78 (251)
T ss_dssp GGTEEECTTCC------CS--SCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-----
T ss_pred CCeEEecCCCC------cc--ccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhH-----
Confidence 45677777777 66 6776554 57778888877 44444 3457777788888877 5554444321
Q ss_pred ccceecccccccCCcccccccccccccccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecC
Q 045150 589 LRHLIGKLIGTLPIENLTNLQTLKYVRCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSD 668 (841)
Q Consensus 589 L~~L~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~ 668 (841)
+..+++|++|++.++ ... .+....+..+++|+.|++++|.
T Consensus 79 -------------~~~l~~L~~L~L~~n----------------------~l~-----~~~~~~~~~l~~L~~L~L~~N~ 118 (251)
T 3m19_A 79 -------------FDDLTELGTLGLANN----------------------QLA-----SLPLGVFDHLTQLDKLYLGGNQ 118 (251)
T ss_dssp -------------TTTCTTCCEEECTTS----------------------CCC-----CCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------hccCCcCCEEECCCC----------------------ccc-----ccChhHhcccCCCCEEEcCCCc
Confidence 223333444444333 211 1111233444555555555553
Q ss_pred CCccCCCCCcccccCCCCCCCcccceeEecccc-CCCCc-cccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEec
Q 045150 669 GTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPK-DMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNF 746 (841)
Q Consensus 669 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~ 746 (841)
+....+ ..+..+++|+.|++++|. ..+|. .+..+ ++|+.|+|++|.+...++..+..+++|+.|+|++
T Consensus 119 l~~~~~---------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 119 LKSLPS---------GVFDRLTKLKELRLNTNQLQSIPAGAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CCCCCT---------TTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcCh---------hHhccCCcccEEECcCCcCCccCHHHcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 322111 112334455555555542 22333 34444 7777777777777666666677777777777777
Q ss_pred ccCCC
Q 045150 747 YRDSG 751 (841)
Q Consensus 747 N~l~~ 751 (841)
|.++.
T Consensus 189 N~~~c 193 (251)
T 3m19_A 189 NQFDC 193 (251)
T ss_dssp CCBCT
T ss_pred CceeC
Confidence 76654
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=2.4e-13 Score=142.03 Aligned_cols=172 Identities=20% Similarity=0.166 Sum_probs=113.3
Q ss_pred hccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceecccccccCCcccccccccccc
Q 045150 536 KLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYV 614 (841)
Q Consensus 536 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~ 614 (841)
.+..+++|++|++++| .+..+|. +..+++|++|+++ |.+..++. +.++ ++|+.|++.
T Consensus 41 ~~~~l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l-------------------~~L~~L~l~ 98 (291)
T 1h6t_A 41 TQNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANL-------------------KNLGWLFLD 98 (291)
T ss_dssp CHHHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTC-------------------TTCCEEECC
T ss_pred chhhcCcccEEEccCC-CcccChh-HhcCCCCCEEEccCCccCCCcc-cccC-------------------CCCCEEECC
Confidence 3567899999999999 7888865 8899999999999 76666655 4444 445555555
Q ss_pred cccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccce
Q 045150 615 RCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVD 694 (841)
Q Consensus 615 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~ 694 (841)
+|.-..+..+..+++|+.|++++|.... + ..+..+++|+.|++++|.+.. +..+..+++|+.
T Consensus 99 ~n~l~~~~~l~~l~~L~~L~L~~n~i~~-----~--~~l~~l~~L~~L~l~~n~l~~-----------~~~l~~l~~L~~ 160 (291)
T 1h6t_A 99 ENKVKDLSSLKDLKKLKSLSLEHNGISD-----I--NGLVHLPQLESLYLGNNKITD-----------ITVLSRLTKLDT 160 (291)
T ss_dssp SSCCCCGGGGTTCTTCCEEECTTSCCCC-----C--GGGGGCTTCCEEECCSSCCCC-----------CGGGGGCTTCSE
T ss_pred CCcCCCChhhccCCCCCEEECCCCcCCC-----C--hhhcCCCCCCEEEccCCcCCc-----------chhhccCCCCCE
Confidence 5542223446677777777777765331 1 346667777777777774332 123455666777
Q ss_pred eEeccccCC-CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCC
Q 045150 695 LRLTGRMTT-LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSG 751 (841)
Q Consensus 695 L~L~~~~~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 751 (841)
|++++|... ++. +..+ ++|+.|+|++|.++.. +.+..+++|+.|++++|.++.
T Consensus 161 L~L~~N~l~~~~~-l~~l-~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 161 LSLEDNQISDIVP-LAGL-TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCCCCGG-GTTC-TTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred EEccCCccccchh-hcCC-CccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccC
Confidence 777765332 333 4444 7777777777777542 347777777777777775543
No 103
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.41 E-value=1.8e-12 Score=143.25 Aligned_cols=205 Identities=16% Similarity=0.142 Sum_probs=132.5
Q ss_pred CCCCcccCCChHHHHHHH-hc---CCCCCeEEEEE--EccCCCcHHHHHHHHhcCccccC-----CCC-cEEEEEeCCcc
Q 045150 166 EENPVGFEDDTDVLLSKL-LA---GDEPRRLVISI--YGMGGLGKTTLAKKLYHSSDVKN-----KFE-CCAWVSVSQDY 233 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L-~~---~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~-----~F~-~~~wv~vs~~~ 233 (841)
+..++||+.+++++...+ .. +.......+.| +|++|+||||||+.+++. ... .|. .++|+.+....
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCC
Confidence 467999999999999988 42 20012345666 999999999999999984 322 233 36788877778
Q ss_pred CHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHcc--CceEEEEEecCCCh--------hhHHHHHhhC---CC
Q 045150 234 QFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQ--GKTYLMVLDDVWRK--------VDWENLRRAF---PD 300 (841)
Q Consensus 234 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~--------~~~~~l~~~l---~~ 300 (841)
+...++..++.+++..... ...+..++...+.+.+. +++++|||||+|.. +.+..+...+ +.
T Consensus 99 ~~~~~~~~l~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQV-----RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCC-----TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC
T ss_pred CHHHHHHHHHHHhCCCCCC-----CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc
Confidence 8999999999998653211 12234566677777774 78999999999763 2233332222 21
Q ss_pred CC--CCcEEEEEecchHHhhcC--------CCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcC---
Q 045150 301 NK--NGSRVIITTRNREVAERS--------DEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCD--- 367 (841)
Q Consensus 301 ~~--~gs~ilvTtR~~~v~~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~--- 367 (841)
.+ ....||+||+...+.... ..-...+.+.+++.++.+++|...+........-..+....|++.++
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDK 253 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGG
T ss_pred CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhc
Confidence 12 344578788765432111 11113399999999999999976542110111122456778899999
Q ss_pred ---CCchHHHHHh
Q 045150 368 ---GLPLAIVVLG 377 (841)
Q Consensus 368 ---glPlai~~~~ 377 (841)
|.|..+..++
T Consensus 254 ~~~G~p~~~~~l~ 266 (412)
T 1w5s_A 254 GGDGSARRAIVAL 266 (412)
T ss_dssp TSCCCHHHHHHHH
T ss_pred cCCCcHHHHHHHH
Confidence 9997655443
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.38 E-value=1.4e-12 Score=133.21 Aligned_cols=174 Identities=22% Similarity=0.212 Sum_probs=125.5
Q ss_pred CcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceecccccccCCcccccccccccccccch
Q 045150 541 IHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCKSW 619 (841)
Q Consensus 541 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~~~ 619 (841)
...++++++++ .+..+|..+. .+|++|+|+ +.+..++.
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~-------------------------------------- 52 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSD-------------------------------------- 52 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCT--------------------------------------
T ss_pred CCCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCH--------------------------------------
Confidence 45678888888 7888887665 688888888 55554443
Q ss_pred hccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEecc
Q 045150 620 IRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTG 699 (841)
Q Consensus 620 ~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~ 699 (841)
..+..+++|+.|++++|... ...+..+..+++|+.|++++|.+....+ ..+..+++|+.|++++
T Consensus 53 --~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------~~~~~l~~L~~L~L~~ 116 (251)
T 3m19_A 53 --ATFRGLTKLTWLNLDYNQLQ-----TLSAGVFDDLTELGTLGLANNQLASLPL---------GVFDHLTQLDKLYLGG 116 (251)
T ss_dssp --TTTTTCTTCCEEECTTSCCC-----CCCTTTTTTCTTCCEEECTTSCCCCCCT---------TTTTTCTTCCEEECCS
T ss_pred --hHhcCcccCCEEECCCCcCC-----ccCHhHhccCCcCCEEECCCCcccccCh---------hHhcccCCCCEEEcCC
Confidence 12334555666666665533 1111557788999999999996654322 2245678999999999
Q ss_pred cc-CCCCccc-cccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceecccc
Q 045150 700 RM-TTLPKDM-HVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAV 777 (841)
Q Consensus 700 ~~-~~~p~~~-~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 777 (841)
|. ..+|... ..+ ++|+.|+|++|.++..++..++.+++|+.|+|++|++++... .....+++|+.|++++|
T Consensus 117 N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 117 NQLKSLPSGVFDRL-TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH------GAFDRLGKLQTITLFGN 189 (251)
T ss_dssp SCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSC
T ss_pred CcCCCcChhHhccC-CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH------HHHhCCCCCCEEEeeCC
Confidence 74 4466554 445 999999999999987777789999999999999998875432 12346889999999998
Q ss_pred c
Q 045150 778 E 778 (841)
Q Consensus 778 ~ 778 (841)
+
T Consensus 190 ~ 190 (251)
T 3m19_A 190 Q 190 (251)
T ss_dssp C
T ss_pred c
Confidence 7
No 105
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.37 E-value=6e-14 Score=163.11 Aligned_cols=230 Identities=17% Similarity=0.133 Sum_probs=122.9
Q ss_pred cCcccCCCCCCCeeecC-Ccccc--cCccccccccccceeccc-ccccC----Ccccccccccccccc--------c---
Q 045150 557 FPSSIFNLPGLQTLDLS-RCIVQ--LPPETDMMRELRHLIGKL-IGTLP----IENLTNLQTLKYVRC--------K--- 617 (841)
Q Consensus 557 lp~~i~~L~~L~~L~L~-~~~~~--lp~~~~~L~~L~~L~~~~-~~~~~----i~~l~~L~~L~l~~~--------~--- 617 (841)
+|..+..+++|++|+++ |.+.. ++..+.++++|++|.... ..... ...+++|++|++.++ .
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~ 360 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence 44434456667777776 44221 222234566666663211 11111 224566777766331 1
Q ss_pred chhcccc-ccccCCCceEEeccCCCCcCcccccHHHH-hccCCcceEEeeecCCCccCCCCCcccc---cC-CCCCCCcc
Q 045150 618 SWIRVNT-AKLVNLRELHIVGGDGQSMGEMEFSFESI-AKLKNLQFLSVNLSDGTVVLPQSSNAFA---SL-QPLSHCQR 691 (841)
Q Consensus 618 ~~~~~~l-~~l~~L~~L~l~~~~~~~~g~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~---~l-~~l~~~~~ 691 (841)
......+ ..+++|+.|.+.++... .... ..+ ..+++|+.|+++.+.... +..+...+ .+ ..+..+++
T Consensus 361 ~~~l~~l~~~~~~L~~L~~~~~~l~---~~~~--~~l~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~~~l~~~~~~ 433 (594)
T 2p1m_B 361 EQGLVSVSMGCPKLESVLYFCRQMT---NAAL--ITIARNRPNMTRFRLCIIEPKA--PDYLTLEPLDIGFGAIVEHCKD 433 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCCC---HHHH--HHHHHHCTTCCEEEEEESSTTC--CCTTTCCCTHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhchhHHHHHHhcCCcC---HHHH--HHHHhhCCCcceeEeecccCCC--cccccCCchhhHHHHHHhhCCC
Confidence 1112222 23677777766554422 1111 233 357788888888321000 00111000 00 01456789
Q ss_pred cceeEeccccCC-CCccccccCCCccEEEEEeccCCCCChhhh-hhcccCCeEEEecccCCCCCccccceEEcCCCcccc
Q 045150 692 LVDLRLTGRMTT-LPKDMHVLLPNLECLSLKVVLPEENPMPAL-EMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLL 769 (841)
Q Consensus 692 L~~L~L~~~~~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L 769 (841)
|+.|+++++... .+..+...+++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++ ..+......+++|
T Consensus 434 L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~-----~~~~~~~~~l~~L 508 (594)
T 2p1m_B 434 LRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD-----KALLANASKLETM 508 (594)
T ss_dssp CCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH-----HHHHHTGGGGGGS
T ss_pred ccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH-----HHHHHHHHhCCCC
Confidence 999999874322 222344434999999999999876555555 779999999999986532 1111123458999
Q ss_pred cceeccccccCceEEEEc--cCccccccccccc
Q 045150 770 EILLLDAVEVGIVEWQVE--ERAMPMLRGLKIP 800 (841)
Q Consensus 770 ~~L~l~~~~~~l~~~~~~--~~~~p~L~~L~l~ 800 (841)
+.|++++|+ ++.-... ...+|+|+...+.
T Consensus 509 ~~L~l~~~~--~~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 509 RSLWMSSCS--VSFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp SEEEEESSC--CBHHHHHHHHHHCTTEEEEEEC
T ss_pred CEEeeeCCC--CCHHHHHHHHHhCCCCEEEEec
Confidence 999999998 4221111 1245666555554
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=9.7e-13 Score=149.13 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=48.4
Q ss_pred eeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccc
Q 045150 511 LLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMREL 589 (841)
Q Consensus 511 ~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L 589 (841)
+|++|+|++|. ++ .+|..+. ++|++|+|++| .+..+| ..+++|++|+++ |.+..+|. +.+ +|
T Consensus 60 ~L~~L~Ls~n~------L~--~lp~~l~--~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLN------LS--SLPDNLP--PQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSC------CS--CCCSCCC--TTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TC
T ss_pred CccEEEeCCCC------CC--ccCHhHc--CCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CC
Confidence 78888888888 77 5776553 78888888888 677888 457888888888 66767776 443 45
Q ss_pred cce
Q 045150 590 RHL 592 (841)
Q Consensus 590 ~~L 592 (841)
++|
T Consensus 123 ~~L 125 (571)
T 3cvr_A 123 KHL 125 (571)
T ss_dssp CEE
T ss_pred CEE
Confidence 554
No 107
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.34 E-value=7.5e-12 Score=134.81 Aligned_cols=201 Identities=14% Similarity=0.076 Sum_probs=131.5
Q ss_pred CCCCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCcc------CHHHH
Q 045150 165 VEENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDY------QFQYL 238 (841)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~ 238 (841)
.+..++||+.+++++.+++..+ +++.|+|++|+|||||++++++. . . .+|+++.... +...+
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~-----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY-----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC-----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC-----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHHH
Confidence 3457999999999999988753 48999999999999999999973 2 1 7788765432 55666
Q ss_pred HHHHHHHhhhc------------cccccCCCCCCCHHHHHHHHHHHccC-ceEEEEEecCCChhh---------HHHHHh
Q 045150 239 LLRIIKSFNII------------SSAEEGGLENKSEEDLERCLYKSLQG-KTYLMVLDDVWRKVD---------WENLRR 296 (841)
Q Consensus 239 ~~~i~~~l~~~------------~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~---------~~~l~~ 296 (841)
+..+...+... ...........+..++...+.+..+. ++++||+||++.... +..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 66666655420 00000000113445666666666543 399999999976332 233333
Q ss_pred hCCCCCCCcEEEEEecchHH-hhc---------C-CCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHH
Q 045150 297 AFPDNKNGSRVIITTRNREV-AER---------S-DEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEK 365 (841)
Q Consensus 297 ~l~~~~~gs~ilvTtR~~~v-~~~---------~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~ 365 (841)
.+.. ..+.++|+|++...+ ... . +.....+.+.+|+.+++.+++...+-..... .-.+.+.+|+..
T Consensus 158 ~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~ 234 (350)
T 2qen_A 158 AYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVEL 234 (350)
T ss_dssp HHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHH
T ss_pred HHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH
Confidence 2221 246789999887643 211 1 1112579999999999999997754221111 123567889999
Q ss_pred cCCCchHHHHHhhhh
Q 045150 366 CDGLPLAIVVLGGLL 380 (841)
Q Consensus 366 c~glPlai~~~~~~L 380 (841)
++|+|+++..++..+
T Consensus 235 tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 235 LDGIPGWLVVFGVEY 249 (350)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHH
Confidence 999999999887653
No 108
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.32 E-value=1e-11 Score=134.24 Aligned_cols=200 Identities=15% Similarity=0.139 Sum_probs=124.8
Q ss_pred CCCCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCc-----cCHHHHH
Q 045150 165 VEENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQD-----YQFQYLL 239 (841)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~ 239 (841)
.+..++||+.+++.+.+ +.. +++.|+|++|+|||||++.+++. ... ..+|+.+... .+....+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHH
Confidence 34579999999999998 653 48999999999999999999983 322 2588887643 3445555
Q ss_pred HHHHHHhhhc-------------c-ccccCC----C-----CCCCHHHHHHHHHHHccCceEEEEEecCCChh-----hH
Q 045150 240 LRIIKSFNII-------------S-SAEEGG----L-----ENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV-----DW 291 (841)
Q Consensus 240 ~~i~~~l~~~-------------~-~~~~~~----~-----~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----~~ 291 (841)
..+...+... . ...... . .......+...+.+.-+ ++++|||||++..+ +|
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhH
Confidence 5555544210 0 000000 0 11234455555544333 49999999996532 23
Q ss_pred HHHHhhCCCCCCCcEEEEEecchHH-hhc---------CCCc-ceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHH
Q 045150 292 ENLRRAFPDNKNGSRVIITTRNREV-AER---------SDEK-TYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGR 360 (841)
Q Consensus 292 ~~l~~~l~~~~~gs~ilvTtR~~~v-~~~---------~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 360 (841)
..+...+.+...+.++|+|++.... ... .... ...+.+.+|+.+++.+++...+-......+.. .
T Consensus 158 ~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~ 233 (357)
T 2fna_A 158 LPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----E 233 (357)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----H
T ss_pred HHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----H
Confidence 2222222211236789999997653 211 1111 25789999999999999987542111111221 7
Q ss_pred HHHHHcCCCchHHHHHhhhhc
Q 045150 361 EMVEKCDGLPLAIVVLGGLLS 381 (841)
Q Consensus 361 ~i~~~c~glPlai~~~~~~L~ 381 (841)
.|+..++|+|+++..++..+.
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHc
Confidence 899999999999998887653
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.31 E-value=6.7e-13 Score=136.34 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=31.4
Q ss_pred CceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccC
Q 045150 509 FLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLP 580 (841)
Q Consensus 509 ~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp 580 (841)
+..+..++++++. ++ .++ .+..+++|++|++++| .+..+| .+..+++|++|+++ |.+..+|
T Consensus 18 l~~l~~l~l~~~~------i~--~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~ 79 (263)
T 1xeu_A 18 LANAVKQNLGKQS------VT--DLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLS 79 (263)
T ss_dssp HHHHHHHHHTCSC------TT--SEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCG
T ss_pred HHHHHHHHhcCCC------cc--ccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCCh
Confidence 3344445555555 44 333 3455555666666655 455555 45555556666655 4444333
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=3.6e-14 Score=161.81 Aligned_cols=36 Identities=14% Similarity=-0.041 Sum_probs=25.1
Q ss_pred cccCcceeeecCCCcCccccCcccCCCCCCCeeecCC
Q 045150 538 GKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLSR 574 (841)
Q Consensus 538 ~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~ 574 (841)
..+++|+.|+|++| .+..+|.+|++|++|+.|++++
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~ 381 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPEN 381 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccCccceeccCChh-hHHhhHHHHHHHHHHHHhcccc
Confidence 45667777777777 5667777777777777777764
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=4.1e-12 Score=124.40 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=22.3
Q ss_pred CCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCC
Q 045150 713 PNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDS 750 (841)
Q Consensus 713 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~ 750 (841)
++|+.|++++|.+++. +.+..+++|+.|++++|++.
T Consensus 159 ~~L~~L~l~~n~i~~~--~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 159 PELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSCCEEECTTBCCCCC--TTGGGCSSCCEEEECBC---
T ss_pred CCCCEEECCCCCCcCh--HHhccCCCCCEEEeeCcccC
Confidence 6677777777766542 26667777777777776543
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=3.2e-12 Score=125.18 Aligned_cols=146 Identities=14% Similarity=0.167 Sum_probs=73.3
Q ss_pred ccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-Ccccc-cCcccc
Q 045150 507 KRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQ-LPPETD 584 (841)
Q Consensus 507 ~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~-lp~~~~ 584 (841)
..+++|+.|++++|. ++ .+| .+..+++|++|++++| .+..++ .+..+++|++|+++ |.+.. .|..+
T Consensus 41 ~~l~~L~~L~l~~n~------i~--~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l- 108 (197)
T 4ezg_A 41 AQMNSLTYITLANIN------VT--DLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNL- 108 (197)
T ss_dssp HHHHTCCEEEEESSC------CS--CCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCC-
T ss_pred hhcCCccEEeccCCC------cc--ChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhh-
Confidence 344556666666665 55 444 4555666666666665 444433 45556666666666 33332 23322
Q ss_pred ccccccceecccccccCCccccccccccccccc--chhccccccccCCCceEEeccC-CCCcCcccccHHHHhccCCcce
Q 045150 585 MMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK--SWIRVNTAKLVNLRELHIVGGD-GQSMGEMEFSFESIAKLKNLQF 661 (841)
Q Consensus 585 ~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~-~~~~g~~~~~~~~l~~l~~L~~ 661 (841)
+.+++|++|++++|. ...+..++.+++|+.|++++|. ... + ..+..+++|+.
T Consensus 109 ------------------~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-----~--~~l~~l~~L~~ 163 (197)
T 4ezg_A 109 ------------------SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-----I--MPLKTLPELKS 163 (197)
T ss_dssp ------------------TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-----C--GGGGGCSSCCE
T ss_pred ------------------cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-----c--HhhcCCCCCCE
Confidence 333444444444444 2234445555666666665554 221 1 23555666666
Q ss_pred EEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccc
Q 045150 662 LSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGR 700 (841)
Q Consensus 662 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~ 700 (841)
|++++|.+.. +..+..+++|+.|++++|
T Consensus 164 L~l~~n~i~~-----------~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 164 LNIQFDGVHD-----------YRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECTTBCCCC-----------CTTGGGCSSCCEEEECBC
T ss_pred EECCCCCCcC-----------hHHhccCCCCCEEEeeCc
Confidence 6666653321 113444556666666654
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.27 E-value=5.5e-12 Score=124.75 Aligned_cols=94 Identities=17% Similarity=0.057 Sum_probs=41.3
Q ss_pred cccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCC
Q 045150 624 TAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTT 703 (841)
Q Consensus 624 l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~ 703 (841)
+..+++|+.|++++|... .+....+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.
T Consensus 96 ~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~l~~~~~---------~~~~~l~~L~~L~l~~N~-- 159 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQ-----SLPDGVFDKLTQLKDLRLYQNQLKSVPD---------GVFDRLTSLQYIWLHDNP-- 159 (208)
T ss_dssp TTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCSCCCT---------TTTTTCTTCCEEECCSCC--
T ss_pred hcCccCCCEEEcCCCcCc-----ccCHhHhccCCcCCEEECCCCccceeCH---------HHhccCCCccEEEecCCC--
Confidence 344445555555544422 1111234455566666666554332111 112334455555555541
Q ss_pred CCccccccCCCccEEEEEeccCCCCChhhhhhcc
Q 045150 704 LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLS 737 (841)
Q Consensus 704 ~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~ 737 (841)
+... +++|+.|+++.|.+++..+..++.++
T Consensus 160 ---~~~~-~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 160 ---WDCT-CPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ---BCCC-TTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ---eecC-CCCHHHHHHHHHhCCceeeccCcccc
Confidence 1112 24555555555555555554444443
No 114
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.25 E-value=1.2e-11 Score=133.14 Aligned_cols=226 Identities=15% Similarity=0.095 Sum_probs=153.4
Q ss_pred ccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceecccccccCCccccccccccccc
Q 045150 537 LGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVR 615 (841)
Q Consensus 537 i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~ 615 (841)
++.+.. +.++-+++ .++++|..+ ..++++|+|+ +.+..+|.+. +.++++|++|++++
T Consensus 6 ~C~C~~-~~v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~------------------f~~l~~L~~L~Ls~ 63 (350)
T 4ay9_X 6 ICHCSN-RVFLCQES-KVTEIPSDL--PRNAIELRFVLTKLRVIQKGA------------------FSGFGDLEKIEISQ 63 (350)
T ss_dssp SSEEET-TEEEEEST-TCCSCCTTC--CTTCSEEEEESCCCSEECTTS------------------STTCTTCCEEEEEC
T ss_pred ccEeeC-CEEEecCC-CCCccCcCc--CCCCCEEEccCCcCCCcCHHH------------------HcCCCCCCEEECcC
Confidence 344433 56777777 788999876 4789999999 7888888643 45667777777777
Q ss_pred cc--chh-ccccccccCCCceE-EeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcc
Q 045150 616 CK--SWI-RVNTAKLVNLRELH-IVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQR 691 (841)
Q Consensus 616 ~~--~~~-~~~l~~l~~L~~L~-l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 691 (841)
|. ... ...+.++++|.++. +..|... .+.+..+..+++|+.|++++|.+....+.. +....+
T Consensus 64 N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-----~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~---------~~~~~~ 129 (350)
T 4ay9_X 64 NDVLEVIEADVFSNLPKLHEIRIEKANNLL-----YINPEAFQNLPNLQYLLISNTGIKHLPDVH---------KIHSLQ 129 (350)
T ss_dssp CTTCCEECTTSBCSCTTCCEEEEEEETTCC-----EECTTSBCCCTTCCEEEEEEECCSSCCCCT---------TCCBSS
T ss_pred CCCCCccChhHhhcchhhhhhhcccCCccc-----ccCchhhhhccccccccccccccccCCchh---------hcccch
Confidence 76 222 23577888887644 4445422 232266788999999999999665432211 122345
Q ss_pred cceeEeccc--cCCCCc-cccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEec-ccCCCCCccccceEEcCCCcc
Q 045150 692 LVDLRLTGR--MTTLPK-DMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNF-YRDSGDPYHEKKLSCRAEGFP 767 (841)
Q Consensus 692 L~~L~L~~~--~~~~p~-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~~~f~ 767 (841)
+..|++.++ ...+|. .+..+...++.|+|++|.++.... .....++|+.|++++ |.++..+. .....++
T Consensus 130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~-~~f~~~~L~~l~l~~~n~l~~i~~------~~f~~l~ 202 (350)
T 4ay9_X 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-SAFNGTQLDELNLSDNNNLEELPN------DVFHGAS 202 (350)
T ss_dssp CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-TSSTTEEEEEEECTTCTTCCCCCT------TTTTTEE
T ss_pred hhhhhhccccccccccccchhhcchhhhhhccccccccCCCh-hhccccchhHHhhccCCcccCCCH------HHhccCc
Confidence 777777653 334443 333444579999999999975443 444567899999975 44443321 1235689
Q ss_pred cccceeccccccCceEEEEccCccccccccccccccCCC-CCCc
Q 045150 768 LLEILLLDAVEVGIVEWQVEERAMPMLRGLKIPSDIPNL-NIPE 810 (841)
Q Consensus 768 ~L~~L~l~~~~~~l~~~~~~~~~~p~L~~L~l~~~c~~L-~lp~ 810 (841)
+|+.|++++|. ++.+|. +.+.+|++|.+. +|+++ .+|.
T Consensus 203 ~L~~LdLs~N~--l~~lp~--~~~~~L~~L~~l-~~~~l~~lP~ 241 (350)
T 4ay9_X 203 GPVILDISRTR--IHSLPS--YGLENLKKLRAR-STYNLKKLPT 241 (350)
T ss_dssp CCSEEECTTSC--CCCCCS--SSCTTCCEEECT-TCTTCCCCCC
T ss_pred ccchhhcCCCC--cCccCh--hhhccchHhhhc-cCCCcCcCCC
Confidence 99999999997 888753 568899999998 89999 8884
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=1.5e-11 Score=126.32 Aligned_cols=125 Identities=18% Similarity=0.142 Sum_probs=83.6
Q ss_pred HhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccc
Q 045150 505 LFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPET 583 (841)
Q Consensus 505 ~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~ 583 (841)
.+..+++|++|++++|. ++ .+| .+..+++|++|+|++| .+..+|. +.++++|++|+++ |.+..+|...
T Consensus 36 ~~~~l~~L~~L~l~~n~------i~--~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~ 104 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSN------IQ--SLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRLKNLNGIP 104 (263)
T ss_dssp CHHHHTTCSEEECTTSC------CC--CCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCCSCCTTCC
T ss_pred chhhcCcCcEEECcCCC------cc--cch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCccCCcCccc
Confidence 35678889999999998 77 666 6888999999999998 7777877 8899999999999 6666655421
Q ss_pred cccccccceecccccccCCcccccccccccccccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEE
Q 045150 584 DMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLS 663 (841)
Q Consensus 584 ~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~ 663 (841)
. ++|+.|++.+|.-.....+..+++|+.|++++|..... ..+..+++|+.|+
T Consensus 105 --------------------~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-------~~l~~l~~L~~L~ 156 (263)
T 1xeu_A 105 --------------------S-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-------VMLGFLSKLEVLD 156 (263)
T ss_dssp --------------------C-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-------GGGGGCTTCCEEE
T ss_pred --------------------c-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC-------hHHccCCCCCEEE
Confidence 1 44555555555422223455666666666666553311 2355566666666
Q ss_pred eeecC
Q 045150 664 VNLSD 668 (841)
Q Consensus 664 l~~~~ 668 (841)
+++|.
T Consensus 157 L~~N~ 161 (263)
T 1xeu_A 157 LHGNE 161 (263)
T ss_dssp CTTSC
T ss_pred CCCCc
Confidence 66653
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=7.4e-14 Score=159.24 Aligned_cols=219 Identities=16% Similarity=0.114 Sum_probs=147.6
Q ss_pred ccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecCCcccccCcccccc
Q 045150 507 KRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLSRCIVQLPPETDMM 586 (841)
Q Consensus 507 ~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~lp~~~~~L 586 (841)
..+++|+.|+|++|. ++ .+|..|++|++|+.|++++|..+..+|..+. .+ +.....|..++.|
T Consensus 346 ~~~~~L~~L~Ls~n~------L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~------~~---~~~~~~~~~l~~l 408 (567)
T 1dce_A 346 ATDEQLFRCELSVEK------ST--VLQSELESCKELQELEPENKWCLLTIILLMR------AL---DPLLYEKETLQYF 408 (567)
T ss_dssp STTTTSSSCCCCHHH------HH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------HH---CTGGGHHHHHHHH
T ss_pred ccCccceeccCChhh------HH--hhHHHHHHHHHHHHhccccchhhhhHHHHHH------hc---ccccCCHHHHHHH
Confidence 568899999999999 88 8999999999999999987732233332111 01 1122345566667
Q ss_pred ccccceecccccccCCccccccccccccccc-chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEee
Q 045150 587 RELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVN 665 (841)
Q Consensus 587 ~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~ 665 (841)
++|+.|..- ....+++|+.+.+.++. ...+. ..|+.|++++|... .++ . +..+++|+.|+|+
T Consensus 409 ~~L~~L~~l-----~~n~~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~-----~lp-~-~~~l~~L~~L~Ls 471 (567)
T 1dce_A 409 STLKAVDPM-----RAAYLDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLT-----VLC-H-LEQLLLVTHLDLS 471 (567)
T ss_dssp HHHHHHCGG-----GHHHHHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCS-----SCC-C-GGGGTTCCEEECC
T ss_pred HhcccCcch-----hhcccchhhhhhhhcccccccCc-----cCceEEEecCCCCC-----CCc-C-ccccccCcEeecC
Confidence 777666410 01223455555555544 11111 24888888888643 222 4 7888999999999
Q ss_pred ecCCCccCCCCCcccccCCCCCCCcccceeEeccccC-CCCccccccCCCccEEEEEeccCCCCC-hhhhhhcccCCeEE
Q 045150 666 LSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMT-TLPKDMHVLLPNLECLSLKVVLPEENP-MPALEMLSNLTILD 743 (841)
Q Consensus 666 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~-~~p~~~~~l~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~ 743 (841)
+|.+. .+|. .+..+++|+.|+|++|.. .+| .+..+ ++|+.|+|++|.+++.. |..++.+++|+.|+
T Consensus 472 ~N~l~-~lp~---------~~~~l~~L~~L~Ls~N~l~~lp-~l~~l-~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 472 HNRLR-ALPP---------ALAALRCLEVLQASDNALENVD-GVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp SSCCC-CCCG---------GGGGCTTCCEEECCSSCCCCCG-GGTTC-SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred ccccc-ccch---------hhhcCCCCCEEECCCCCCCCCc-ccCCC-CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 88655 2232 255677899999998744 466 67776 99999999999998776 88899999999999
Q ss_pred EecccCCCCCccccceEEcCCCcccccceec
Q 045150 744 LNFYRDSGDPYHEKKLSCRAEGFPLLEILLL 774 (841)
Q Consensus 744 L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l 774 (841)
|++|.+++.+.....+ ...+|+|+.|++
T Consensus 540 L~~N~l~~~~~~~~~l---~~~lp~L~~L~l 567 (567)
T 1dce_A 540 LQGNSLCQEEGIQERL---AEMLPSVSSILT 567 (567)
T ss_dssp CTTSGGGGSSSCTTHH---HHHCTTCSEEEC
T ss_pred ecCCcCCCCccHHHHH---HHHCcccCccCC
Confidence 9999877654221111 123788888864
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.22 E-value=2.2e-11 Score=138.07 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=113.2
Q ss_pred CcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceec---ccccccCCcccccccccccccc
Q 045150 541 IHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIG---KLIGTLPIENLTNLQTLKYVRC 616 (841)
Q Consensus 541 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~---~~~~~~~i~~l~~L~~L~l~~~ 616 (841)
.+|++|+|++| .+..+|..+. ++|++|+|+ |.+..+| ..+++|++|+. .......+.. +|+.|++++|
T Consensus 59 ~~L~~L~Ls~n-~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSS-CCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSS
T ss_pred CCccEEEeCCC-CCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCC
Confidence 38999999999 7888998774 899999999 7888888 45677887743 2222111333 7777887777
Q ss_pred c-chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCccccee
Q 045150 617 K-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDL 695 (841)
Q Consensus 617 ~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L 695 (841)
. ...+. .+++|+.|++++|... . ++ . .+++|+.|++++|.+.+ +| . +. ++|+.|
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~---~--lp-~---~l~~L~~L~Ls~N~L~~-lp-------~---l~--~~L~~L 185 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLT---M--LP-E---LPTSLEVLSVRNNQLTF-LP-------E---LP--ESLEAL 185 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCS---C--CC-C---CCTTCCEEECCSSCCSC-CC-------C---CC--TTCCEE
T ss_pred cCCCCCC---cCccccEEeCCCCccC---c--CC-C---cCCCcCEEECCCCCCCC-cc-------h---hh--CCCCEE
Confidence 6 33333 5677888888777643 1 22 2 45678888888775443 22 1 11 567788
Q ss_pred Eecccc-CCCCccccccCCCc-------cEEEEEeccCCCCChhhhhhcccCCeEEEecccCCC
Q 045150 696 RLTGRM-TTLPKDMHVLLPNL-------ECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSG 751 (841)
Q Consensus 696 ~L~~~~-~~~p~~~~~l~~~L-------~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 751 (841)
+|++|. ..+|. +. .+| +.|+|++|.++. .+..+..+++|+.|+|++|.+++
T Consensus 186 ~Ls~N~L~~lp~-~~---~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 186 DVSTNLLESLPA-VP---VRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ECCSSCCSSCCC-CC-----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCH
T ss_pred ECcCCCCCchhh-HH---HhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCC
Confidence 887763 34555 32 355 778888887764 45556667888888887776653
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.22 E-value=2.8e-11 Score=119.62 Aligned_cols=53 Identities=17% Similarity=0.003 Sum_probs=31.4
Q ss_pred CCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccc
Q 045150 713 PNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVE 778 (841)
Q Consensus 713 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 778 (841)
++|+.|+|++|.++...+..+..+++|+.|+|++|.+. +.+++|+.|.++.+.
T Consensus 124 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------------~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 124 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------------CTCPGIRYLSEWINK 176 (208)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------------CCTTTTHHHHHHHHH
T ss_pred CcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------------cCCCCHHHHHHHHHh
Confidence 66666666666665554445666666666666665332 134566666666554
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.21 E-value=2.7e-11 Score=130.76 Aligned_cols=172 Identities=18% Similarity=0.167 Sum_probs=102.0
Q ss_pred eEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcc-cC-CCCCCCeeecC-CcccccCccccccccc
Q 045150 513 RVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSS-IF-NLPGLQTLDLS-RCIVQLPPETDMMREL 589 (841)
Q Consensus 513 r~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~-~L~~L~~L~L~-~~~~~lp~~~~~L~~L 589 (841)
++++++++. ++ .+|..+. ..+++|+|++| .+..+|.. +. ++++|++|+|+ +.+..++...
T Consensus 21 ~~l~c~~~~------l~--~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~------ 83 (361)
T 2xot_A 21 NILSCSKQQ------LP--NVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA------ 83 (361)
T ss_dssp TEEECCSSC------CS--SCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT------
T ss_pred CEEEeCCCC------cC--ccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhh------
Confidence 578888887 77 6776554 45788888888 66666544 44 78888888888 6665555321
Q ss_pred cceecccccccCCcccccccccccccccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCC
Q 045150 590 RHLIGKLIGTLPIENLTNLQTLKYVRCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDG 669 (841)
Q Consensus 590 ~~L~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~ 669 (841)
+..+++|+.|++++|. .. .+....+..+++|+.|+|++|.+
T Consensus 84 ------------~~~l~~L~~L~Ls~N~----------------------l~-----~~~~~~~~~l~~L~~L~L~~N~i 124 (361)
T 2xot_A 84 ------------FVPVPNLRYLDLSSNH----------------------LH-----TLDEFLFSDLQALEVLLLYNNHI 124 (361)
T ss_dssp ------------TTTCTTCCEEECCSSC----------------------CC-----EECTTTTTTCTTCCEEECCSSCC
T ss_pred ------------ccCCCCCCEEECCCCc----------------------CC-----cCCHHHhCCCcCCCEEECCCCcc
Confidence 3334444444444443 11 11112344455555555555543
Q ss_pred CccCCCCCcccccCCCCCCCcccceeEecccc-CCCCcccc----ccCCCccEEEEEeccCCCCChhhhhhcccC--CeE
Q 045150 670 TVVLPQSSNAFASLQPLSHCQRLVDLRLTGRM-TTLPKDMH----VLLPNLECLSLKVVLPEENPMPALEMLSNL--TIL 742 (841)
Q Consensus 670 ~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~p~~~~----~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L--~~L 742 (841)
....+ ..+..+++|+.|+|++|. ..+|..+. .+ ++|+.|+|++|.++..++..+..++.+ +.|
T Consensus 125 ~~~~~---------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 125 VVVDR---------NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL-PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp CEECT---------TTTTTCTTCCEEECCSSCCCSCCGGGTC----C-TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTE
T ss_pred cEECH---------HHhCCcccCCEEECCCCcCCeeCHHHhcCcccC-CcCCEEECCCCCCCccCHHHhhhccHhhcceE
Confidence 32211 113344556666665543 33555442 33 888888888888877777778888874 788
Q ss_pred EEecccCC
Q 045150 743 DLNFYRDS 750 (841)
Q Consensus 743 ~L~~N~l~ 750 (841)
+|++|.+.
T Consensus 195 ~l~~N~~~ 202 (361)
T 2xot_A 195 YLHNNPLE 202 (361)
T ss_dssp ECCSSCEE
T ss_pred EecCCCcc
Confidence 88887654
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.21 E-value=7e-11 Score=118.51 Aligned_cols=47 Identities=28% Similarity=0.200 Sum_probs=33.6
Q ss_pred CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCC
Q 045150 704 LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSG 751 (841)
Q Consensus 704 ~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 751 (841)
+|..+..+ ++|+.|+|++|.+....+..+..+++|+.|+|++|.+..
T Consensus 127 lp~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 127 LPRGIERL-THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCTTGGGC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCcccccC-CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 45555555 778888888887776666667778888888888776553
No 121
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.17 E-value=1.1e-10 Score=127.47 Aligned_cols=199 Identities=12% Similarity=0.044 Sum_probs=129.8
Q ss_pred CCCcccCCChHHHHHHHhcC-CCCCeEEEEEEccCCCcHHHHHHHHhcCccccC------C--CCcEEEEEeCCcc-CHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAG-DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKN------K--FECCAWVSVSQDY-QFQ 236 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------~--F~~~~wv~vs~~~-~~~ 236 (841)
+.++||+.+++++..++..- .....+.+.|+|++|+||||||+.+++. ... . ...++|++++... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 67999999999999887641 1113458999999999999999999983 311 1 2346788877777 888
Q ss_pred HHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChhh---HHH-HHhhCCCCCCCcEEEEEec
Q 045150 237 YLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKVD---WEN-LRRAFPDNKNGSRVIITTR 312 (841)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~---~~~-l~~~l~~~~~gs~ilvTtR 312 (841)
.++..++.++...... ....+...+...+.+.+..++.+|||||++.... .+. +...+... .+..||+||+
T Consensus 98 ~~~~~l~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~ 172 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVP----KHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISN 172 (384)
T ss_dssp HHHHHHHHHHHCSCCC----SSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECS
T ss_pred HHHHHHHHHhcCCCCC----CCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEEC
Confidence 8999999888532211 1122345667778888877666999999976432 222 22222212 5778899988
Q ss_pred chHHhhcCC-----CcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcC---CCchH
Q 045150 313 NREVAERSD-----EKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCD---GLPLA 372 (841)
Q Consensus 313 ~~~v~~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~---glPla 372 (841)
......... .-...+.+++++.++..+++...+...-....-..+..+.+++.++ |.|..
T Consensus 173 ~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~ 240 (384)
T 2qby_B 173 DINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARK 240 (384)
T ss_dssp STTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHH
Confidence 653211111 0014899999999999999998753111111111244566777776 88873
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=7.4e-12 Score=147.40 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=96.1
Q ss_pred chhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-Cccccc
Q 045150 501 DLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQL 579 (841)
Q Consensus 501 ~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~l 579 (841)
.++..|..++.|++|+|++|. +. .+|..+..+++|++|+|++| .+..+|..|++|++|++|+|+ |.+..+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~------l~--~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQ------IF--NISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp -------CCCCCCEEECTTSC------CS--CCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSC
T ss_pred cChhhhccCCCCcEEECCCCC------CC--CCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCcc
Confidence 446678899999999999999 87 78888889999999999999 777999999999999999999 777788
Q ss_pred CccccccccccceecccccccCCccccccccccccccc-chhccccccccCCCceEEeccCCCCcCcccccHHHHhccC-
Q 045150 580 PPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLK- 657 (841)
Q Consensus 580 p~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~- 657 (841)
|..+++|++|++| ++.+|. ..++..++.+++|+.|+|++|... ...+..+..+.
T Consensus 286 p~~~~~l~~L~~L-------------------~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~-----~~~p~~~~~~~~ 341 (727)
T 4b8c_D 286 PAELGSCFQLKYF-------------------YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE-----KQFLKILTEKSV 341 (727)
T ss_dssp CSSGGGGTTCSEE-------------------ECCSSCCCCCCSSTTSCTTCCCEECTTSCCC-----SHHHHHHHHHHH
T ss_pred ChhhcCCCCCCEE-------------------ECCCCCCCccChhhhcCCCccEEeCCCCccC-----CCChHHHhhcch
Confidence 8877665555544 445544 444556777777777777777633 11113333221
Q ss_pred CcceEEeeecCCCccCCC
Q 045150 658 NLQFLSVNLSDGTVVLPQ 675 (841)
Q Consensus 658 ~L~~L~l~~~~~~~~~~~ 675 (841)
.+..|++++|.+.+..|.
T Consensus 342 ~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 342 TGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp HHHHHHHHHCCCCCCCCC
T ss_pred hhhHHhhccCcccCcCcc
Confidence 122356666755554443
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.16 E-value=7.1e-11 Score=117.62 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=29.9
Q ss_pred eEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCc-ccCCCCCCCeeecC
Q 045150 513 RVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPS-SIFNLPGLQTLDLS 573 (841)
Q Consensus 513 r~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~ 573 (841)
+.++++++. ++ .+|..+. .+|++|+|++| .+..+|. .+..+++|++|+|+
T Consensus 14 ~~v~c~~~~------l~--~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls 64 (220)
T 2v9t_B 14 NIVDCRGKG------LT--EIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLS 64 (220)
T ss_dssp TEEECTTSC------CS--SCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECC
T ss_pred CEEEcCCCC------cC--cCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECC
Confidence 456666666 55 5665443 56666666666 4555443 45666666666666
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.15 E-value=7.6e-11 Score=117.39 Aligned_cols=38 Identities=21% Similarity=0.088 Sum_probs=21.3
Q ss_pred CCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCC
Q 045150 713 PNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDS 750 (841)
Q Consensus 713 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~ 750 (841)
++|+.|+|++|.++...+..+..+++|+.|+|++|.++
T Consensus 129 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55555555555555444555555666666666555443
No 125
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.13 E-value=1.4e-10 Score=126.71 Aligned_cols=201 Identities=19% Similarity=0.154 Sum_probs=129.1
Q ss_pred CCCCcccCCChHHHHHHHhcC--CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCC---CcEEEEEeCCccCHHHHHH
Q 045150 166 EENPVGFEDDTDVLLSKLLAG--DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKF---ECCAWVSVSQDYQFQYLLL 240 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~ 240 (841)
++.++||+.+++.+.+++... .. ....+.|+|++|+||||||+.+++ .....+ ..++|+.+....+...++.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~-~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREE-KPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTC-CCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCC-CCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 467999999999999988742 11 345889999999999999999998 343332 2467888777777778888
Q ss_pred HHHHHhhhccccccCCCCCCCHHHHHHHHHHHcc--CceEEEEEecCCCh------hhHHHHHhhCCC-CCCCcEEEEEe
Q 045150 241 RIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQ--GKTYLMVLDDVWRK------VDWENLRRAFPD-NKNGSRVIITT 311 (841)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~------~~~~~l~~~l~~-~~~gs~ilvTt 311 (841)
.++.+++.... ....+..+....+.+.+. +++.+||||+++.. ..+..+...+.. ...+..+|+||
T Consensus 96 ~i~~~l~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 96 DLLESLDVKVP-----FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HHTTTTSCCCC-----SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHHhCCCCC-----CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEE
Confidence 88777754321 112334566666666663 45899999999653 223333333311 22345678888
Q ss_pred cchHHhhcCCC------cceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcC---CCchHHH
Q 045150 312 RNREVAERSDE------KTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCD---GLPLAIV 374 (841)
Q Consensus 312 R~~~v~~~~~~------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~---glPlai~ 374 (841)
+.......... ....+.+++++.++..+++...+........-..+..+.+++.++ |.|..+.
T Consensus 171 ~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 171 NDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp SCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 76543322211 115799999999999999987652111111122345566666666 9988443
No 126
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.11 E-value=4e-10 Score=114.39 Aligned_cols=199 Identities=14% Similarity=0.120 Sum_probs=116.5
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
.+++|++..++.+..++..... ..++.|+|++|+||||||+.+++. ....+....+ .+... .. ...+....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~--~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~-~~~~~---~~-~~~~~~~~ 93 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRI--HHAYLFSGTRGVGKTSIARLLAKG--LNCETGITAT-PCGVC---DN-CREIEQGR 93 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCC--CSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCSS-CCSCS---HH-HHHHHTTC
T ss_pred HHHhCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCC-CCccc---HH-HHHHhccC
Confidence 3589999999999999986542 247899999999999999999873 2221111000 00000 00 00000000
Q ss_pred hhccccccCCCCCCCHHHHHHHHHHHc-----cCceEEEEEecCCC--hhhHHHHHhhCCCCCCCcEEEEEecchHH-hh
Q 045150 247 NIISSAEEGGLENKSEEDLERCLYKSL-----QGKTYLMVLDDVWR--KVDWENLRRAFPDNKNGSRVIITTRNREV-AE 318 (841)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~ 318 (841)
........ .........+ ..+.+.+ .+++.+||+||++. ...++.+...+.....+..+|+||+.... ..
T Consensus 94 ~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 94 FVDLIEID-AASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp CSSEEEEE-TTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred CcceEEec-CcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 00000000 0000011112 2222222 35689999999965 45667776666555557788888876431 11
Q ss_pred cCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHhh
Q 045150 319 RSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLGG 378 (841)
Q Consensus 319 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 378 (841)
........+++++++.++..+++...+...... --.+....|++.|+|.|..+..+..
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 111112689999999999999998877543222 1235577899999999998876654
No 127
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.10 E-value=1.5e-09 Score=118.58 Aligned_cols=203 Identities=18% Similarity=0.152 Sum_probs=137.3
Q ss_pred CCCCcccCCChHHHHHHHhc---CCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCC-CcEEEEEeCCccCHHHHHHH
Q 045150 166 EENPVGFEDDTDVLLSKLLA---GDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKF-ECCAWVSVSQDYQFQYLLLR 241 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~ 241 (841)
++.++||+.+++++..++.. +..+..+.+.|+|++|+||||||+.+++ ...... ..++|+.++...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 36799999999999998875 2221334889999999999999999998 343332 34678888888888899999
Q ss_pred HHHHhhhccccccCCCCCCCHHHHHHHHHHHcc--CceEEEEEecCCCh--hhHHHHHhhCCCCC----CCcEEEEEecc
Q 045150 242 IIKSFNIISSAEEGGLENKSEEDLERCLYKSLQ--GKTYLMVLDDVWRK--VDWENLRRAFPDNK----NGSRVIITTRN 313 (841)
Q Consensus 242 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~--~~~~~l~~~l~~~~----~gs~ilvTtR~ 313 (841)
++.+++..... ...+...+...+.+.+. +++.+||||+++.. .....+...+.... .+..||++|+.
T Consensus 94 l~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 94 IARSLNIPFPR-----RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp HHHHTTCCCCS-----SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred HHHHhCccCCC-----CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 99888653211 12344566666666663 67899999999763 44555655554321 36678888876
Q ss_pred hHHhhcCCC------cceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHc---------CCCchHHHH
Q 045150 314 REVAERSDE------KTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKC---------DGLPLAIVV 375 (841)
Q Consensus 314 ~~v~~~~~~------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c---------~glPlai~~ 375 (841)
......... ....+.+.+++.++..+++...+........--.+....+++.+ .|.|..+..
T Consensus 169 ~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~ 245 (389)
T 1fnn_A 169 DAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAID 245 (389)
T ss_dssp THHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHH
T ss_pred chHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 644333221 11369999999999999998775321101112235667788888 788754443
No 128
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.10 E-value=4e-10 Score=123.08 Aligned_cols=194 Identities=13% Similarity=0.062 Sum_probs=128.4
Q ss_pred CCCCcccCCChHHHHHHHhcC-CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCC------CCcEEEEEeCCccCHHHH
Q 045150 166 EENPVGFEDDTDVLLSKLLAG-DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNK------FECCAWVSVSQDYQFQYL 238 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~~ 238 (841)
++.++||+.+++++..++... .......+.|+|++|+||||+|+.+++. .... --..+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 468999999999999988542 0113457899999999999999999983 3221 124678888888889999
Q ss_pred HHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHc--cCceEEEEEecCCChhh----HHHHH---hhCCCC--CCCcEE
Q 045150 239 LLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSL--QGKTYLMVLDDVWRKVD----WENLR---RAFPDN--KNGSRV 307 (841)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~~----~~~l~---~~l~~~--~~gs~i 307 (841)
+..++.+++.... ....+..++...+.+.+ .+++.+||||+++.... .+.+. ...... ..+..+
T Consensus 96 ~~~l~~~l~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 170 (387)
T 2v1u_A 96 ASAIAEAVGVRVP-----FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSL 170 (387)
T ss_dssp HHHHHHHHSCCCC-----SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEE
T ss_pred HHHHHHHhCCCCC-----CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEE
Confidence 9999999865321 12233456667777776 45689999999976432 12222 222111 345677
Q ss_pred EEEecchHH--------hhcCCCcceeEecCCCChhHHHHHHHhHhc---CCCCCCchhHHHHHHHHHHcC---CCch
Q 045150 308 IITTRNREV--------AERSDEKTYVHKLRFLRGDESWLLFCEKAF---RGTNREKGLEKLGREMVEKCD---GLPL 371 (841)
Q Consensus 308 lvTtR~~~v--------~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~~~~~~i~~~c~---glPl 371 (841)
|.||+.... ...+.. ..+.+++++.++..+++...+. ....-.+ +..+.+++.++ |.|.
T Consensus 171 I~~t~~~~~~~~l~~~l~~r~~~--~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 171 VGITNSLGFVENLEPRVKSSLGE--VELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDAR 243 (387)
T ss_dssp EEECSCSTTSSSSCHHHHTTTTS--EECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHH
T ss_pred EEEECCCchHhhhCHHHHhcCCC--eEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHH
Confidence 888876532 222211 4789999999999999988753 2111122 34556777776 9994
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.09 E-value=1.6e-10 Score=115.94 Aligned_cols=64 Identities=23% Similarity=0.335 Sum_probs=38.5
Q ss_pred ceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcc-cCCCCCCCeeecC-CcccccCc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSS-IFNLPGLQTLDLS-RCIVQLPP 581 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~-~~~~~lp~ 581 (841)
++|++|+|++|. +.. ..|..+..+++|++|+|++| .+..+|.. +..+++|++|+|+ |.+..+|.
T Consensus 40 ~~L~~L~Ls~n~------i~~-~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 105 (229)
T 3e6j_A 40 TNAQILYLHDNQ------ITK-LEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105 (229)
T ss_dssp TTCSEEECCSSC------CCC-CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCEEEcCCCc------cCc-cCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccCh
Confidence 556666666666 552 33555666666666666666 45555533 4566666666666 55544444
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.09 E-value=1.9e-10 Score=114.47 Aligned_cols=57 Identities=11% Similarity=0.158 Sum_probs=31.4
Q ss_pred eEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccC--cccCCCCCCCeeecC-CcccccC
Q 045150 513 RVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFP--SSIFNLPGLQTLDLS-RCIVQLP 580 (841)
Q Consensus 513 r~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~L~-~~~~~lp 580 (841)
+.++++++. ++ .+|..+. ..+++|+|++| .+..++ ..+.++++|++|+|+ +.+..++
T Consensus 14 ~~l~~s~n~------l~--~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~ 73 (220)
T 2v70_A 14 TTVDCSNQK------LN--KIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIE 73 (220)
T ss_dssp TEEECCSSC------CS--SCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEEC
T ss_pred CEeEeCCCC------cc--cCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEEC
Confidence 456666666 55 5555443 23466666666 455542 225566666666666 4444433
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.08 E-value=1.3e-10 Score=125.49 Aligned_cols=128 Identities=19% Similarity=0.216 Sum_probs=88.4
Q ss_pred ceeeEEEeecCCcccccccccccchh-hcc-ccCcceeeecCCCcCccccC-cccCCCCCCCeeecC-CcccccCccccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHNK-KLG-KLIHLKYLGIRGTTFIRDFP-SSIFNLPGLQTLDLS-RCIVQLPPETDM 585 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p~-~i~-~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~-~~~~~lp~~~~~ 585 (841)
+.+++|+|++|. ++ .++. .+. .+++|++|+|++| .+..+| ..+.++++|++|+|+ +.+..+|...
T Consensus 39 ~~l~~L~Ls~N~------l~--~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-- 107 (361)
T 2xot_A 39 SYTALLDLSHNN------LS--RLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL-- 107 (361)
T ss_dssp TTCSEEECCSSC------CC--EECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTT--
T ss_pred CCCCEEECCCCC------CC--ccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHH--
Confidence 458999999999 87 5554 455 8999999999999 677766 569999999999999 7776666532
Q ss_pred cccccceecccccccCCccccccccccccccc--chhccccccccCCCceEEeccCCCCcCcccccHHHH---hccCCcc
Q 045150 586 MRELRHLIGKLIGTLPIENLTNLQTLKYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESI---AKLKNLQ 660 (841)
Q Consensus 586 L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l---~~l~~L~ 660 (841)
+..+++|+.|++.+|. ...+..+..+++|+.|++++|.... ++...+ ..+++|+
T Consensus 108 ----------------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 108 ----------------FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-----FPVELIKDGNKLPKLM 166 (361)
T ss_dssp ----------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-----CCGGGTC----CTTCC
T ss_pred ----------------hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-----eCHHHhcCcccCCcCC
Confidence 4556667777777666 2334556777777777777765331 111222 4566677
Q ss_pred eEEeeecCC
Q 045150 661 FLSVNLSDG 669 (841)
Q Consensus 661 ~L~l~~~~~ 669 (841)
.|+|++|.+
T Consensus 167 ~L~L~~N~l 175 (361)
T 2xot_A 167 LLDLSSNKL 175 (361)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCCC
Confidence 777766643
No 132
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.07 E-value=2.2e-10 Score=114.06 Aligned_cols=126 Identities=19% Similarity=0.237 Sum_probs=76.8
Q ss_pred ceeeEEEeecCCcccccccccccch-hhccccCcceeeecCCCcCcccc-CcccCCCCCCCeeecC-CcccccCcccccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHN-KKLGKLIHLKYLGIRGTTFIRDF-PSSIFNLPGLQTLDLS-RCIVQLPPETDMM 586 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p-~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~-~~~~~lp~~~~~L 586 (841)
+.|+.|+|++|. ++ .++ ..+..+++|++|+|++| .+..+ |..+.++++|++|+|+ +.+..+|..+
T Consensus 32 ~~l~~L~l~~n~------i~--~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--- 99 (220)
T 2v9t_B 32 ETITEIRLEQNT------IK--VIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELPKSL--- 99 (220)
T ss_dssp TTCCEEECCSSC------CC--EECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCCCCTTT---
T ss_pred cCCCEEECCCCc------CC--CcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCccCHhH---
Confidence 568888888888 76 444 46788888888888888 55544 6778888888888888 6666666543
Q ss_pred ccccceecccccccCCccccccccccccccc--chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEe
Q 045150 587 RELRHLIGKLIGTLPIENLTNLQTLKYVRCK--SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSV 664 (841)
Q Consensus 587 ~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l 664 (841)
+..+++|+.|++.+|. ...+..+..+++|+.|++++|.... +....+..+++|+.|++
T Consensus 100 ---------------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 100 ---------------FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-----IAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp ---------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-----CCTTTTTTCTTCCEEEC
T ss_pred ---------------ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE-----ECHHHHhCCCCCCEEEe
Confidence 2334445555555444 2223345555555555555554321 11133444555555555
Q ss_pred eec
Q 045150 665 NLS 667 (841)
Q Consensus 665 ~~~ 667 (841)
++|
T Consensus 160 ~~N 162 (220)
T 2v9t_B 160 AQN 162 (220)
T ss_dssp CSS
T ss_pred CCC
Confidence 555
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=1.1e-09 Score=116.39 Aligned_cols=100 Identities=12% Similarity=0.136 Sum_probs=52.9
Q ss_pred CCCceeeEEEeecccccccccchhHHhcc-CceeeEEEeecCCcccccccccc------------------cch-hhccc
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKR-FLLLRVLEIEESGYFSRMLFDNR------------------LHN-KKLGK 539 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~-~~~Lr~L~L~~~~~~~~~~l~~~------------------~~p-~~i~~ 539 (841)
...+++.|.+.+.-.. ..+ ..+.. +++|++|||++|. +..- .+| ..|.+
T Consensus 23 ~~~~l~~L~l~g~i~~----~~~-~~l~~~l~~L~~LdLs~n~------i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~ 91 (329)
T 3sb4_A 23 EANSITHLTLTGKLNA----EDF-RHLRDEFPSLKVLDISNAE------IKMYSGKAGTYPNGKFYIYMANFVPAYAFSN 91 (329)
T ss_dssp HHHHCSEEEEEEEECH----HHH-HHHHHSCTTCCEEEEEEEE------ECCEEESSSSSGGGCCEEECTTEECTTTTEE
T ss_pred hhCceeEEEEeccccH----HHH-HHHHHhhccCeEEecCcce------eEEecCccccccccccccccccccCHHHhcc
Confidence 3456777777664221 122 22333 7889999999887 4300 111 23445
Q ss_pred --------cCcceeeecCCCcCccccC-cccCCCCCCCeeecC-CcccccCc-cccccccccce
Q 045150 540 --------LIHLKYLGIRGTTFIRDFP-SSIFNLPGLQTLDLS-RCIVQLPP-ETDMMRELRHL 592 (841)
Q Consensus 540 --------L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~-~~~~~lp~-~~~~L~~L~~L 592 (841)
+.+|+.|+|.++ +..++ ..+.+|++|+.|+++ +.+..++. .|..+.++..+
T Consensus 92 ~~~~~~~g~~~L~~l~L~~~--i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 92 VVNGVTKGKQTLEKVILSEK--IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFI 153 (329)
T ss_dssp EETTEEEECTTCCC-CBCTT--CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEE
T ss_pred cccccccccCCCcEEECCcc--ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEe
Confidence 666676666662 44443 346666777777776 44444444 33344444444
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.02 E-value=3.4e-10 Score=107.50 Aligned_cols=133 Identities=18% Similarity=0.210 Sum_probs=85.3
Q ss_pred cCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-Ccccc-cCccccc
Q 045150 508 RFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQ-LPPETDM 585 (841)
Q Consensus 508 ~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~-lp~~~~~ 585 (841)
..+.|++|++++|. +....+|..+..+++|++|+|++| .+..+ ..+..+++|++|+++ |.+.. +|..+.+
T Consensus 22 ~~~~L~~L~l~~n~------l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCK------SNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp CTTSCSEEECCSCB------CBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred CcccCCEEECCCCC------CChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 34678888888887 652257777788888888888888 56666 667888888888888 66555 4443333
Q ss_pred cccccceecccccccCCccccccccccccccc-ch--hccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceE
Q 045150 586 MRELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SW--IRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFL 662 (841)
Q Consensus 586 L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~--~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L 662 (841)
+ ++|+.|++.+|. .. .+..+..+++|+.|++++|..... .......+..+++|+.|
T Consensus 94 l-------------------~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~--~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 94 L-------------------PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL--NDYRESVFKLLPQLTYL 152 (168)
T ss_dssp C-------------------TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS--TTHHHHHHTTCSSCCEE
T ss_pred C-------------------CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch--HHHHHHHHHhCccCcEe
Confidence 3 444444555554 22 124566777777888777763311 11111356777888888
Q ss_pred EeeecCC
Q 045150 663 SVNLSDG 669 (841)
Q Consensus 663 ~l~~~~~ 669 (841)
++++|..
T Consensus 153 ~l~~n~~ 159 (168)
T 2ell_A 153 DGYDRED 159 (168)
T ss_dssp TTEETTS
T ss_pred cCCCCCh
Confidence 8887743
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.02 E-value=4.5e-10 Score=106.63 Aligned_cols=114 Identities=21% Similarity=0.067 Sum_probs=57.0
Q ss_pred CCcccceeEeccccCCCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcc
Q 045150 688 HCQRLVDLRLTGRMTTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFP 767 (841)
Q Consensus 688 ~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~ 767 (841)
.+++|+.|++++|...-...+..+ ++|+.|+|++|.+....+..+..+++|+.|+|++|.+++.... .....++
T Consensus 47 ~l~~L~~L~l~~n~l~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~l~~l~ 120 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISVSNLPKL-PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-----EPLKKLE 120 (168)
T ss_dssp GGGGCCEEEEESSCCCCCSSCCCC-SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGG-----GGGSSCS
T ss_pred hCCCCCEEeCcCCCCCChhhhccC-CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhH-----HHHhcCC
Confidence 344455555554422211333333 5666666666665544444555566666666666555442210 1123456
Q ss_pred cccceeccccccCceEEEE----ccCccccccccccccccCCCCCCc
Q 045150 768 LLEILLLDAVEVGIVEWQV----EERAMPMLRGLKIPSDIPNLNIPE 810 (841)
Q Consensus 768 ~L~~L~l~~~~~~l~~~~~----~~~~~p~L~~L~l~~~c~~L~lp~ 810 (841)
+|+.|++++|+ +..++. ....+|+|++|+++ +|+.-++|.
T Consensus 121 ~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~-~n~~~~~~~ 164 (168)
T 2ell_A 121 CLKSLDLFNCE--VTNLNDYRESVFKLLPQLTYLDGY-DREDQEAPD 164 (168)
T ss_dssp CCCEEECCSSG--GGTSTTHHHHHHTTCSSCCEETTE-ETTSCBCCS
T ss_pred CCCEEEeeCCc--CcchHHHHHHHHHhCccCcEecCC-CCChhhccc
Confidence 66666666665 544432 23456666666666 553225544
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.02 E-value=8.5e-11 Score=138.36 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=24.2
Q ss_pred hhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCc
Q 045150 534 NKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPP 581 (841)
Q Consensus 534 p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~ 581 (841)
|..+..+.+|++|+|++| .+..+|..+.++++|++|+|+ |.+..+|.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~ 264 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPA 264 (727)
T ss_dssp -----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCG
T ss_pred hhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccCh
Confidence 445555666666666666 455566555566666666666 44444444
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.99 E-value=4.9e-10 Score=107.24 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=83.3
Q ss_pred hccCceeeEEEeecCCcccccccccccchhhccccC-cceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccc
Q 045150 506 FKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLI-HLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPET 583 (841)
Q Consensus 506 ~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~ 583 (841)
+..+.+|+.|++++|. ++ .+|. +..+. +|++|+|++| .+..+ ..+..+++|++|+++ |.+..+|+.+
T Consensus 15 ~~~~~~L~~L~l~~n~------l~--~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK------IP--VIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp EECTTSCEEEECTTSC------CC--SCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred cCCcCCceEEEeeCCC------Cc--hhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 4567778888888887 76 5553 55554 8888888888 66666 567888888888888 6666666543
Q ss_pred cccccccceecccccccCCccccccccccccccc-chhcc--ccccccCCCceEEeccCCCCcCcccccHHHHhccCCcc
Q 045150 584 DMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SWIRV--NTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQ 660 (841)
Q Consensus 584 ~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~~~~--~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~ 660 (841)
++.+++|+.|++.+|. ...+. .+..+++|+.|++++|..... .......+..+++|+
T Consensus 84 ------------------~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~--~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 84 ------------------DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK--KHYRLYVIYKVPQVR 143 (176)
T ss_dssp ------------------HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS--TTHHHHHHHHCTTCS
T ss_pred ------------------hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc--HhHHHHHHHHCCccc
Confidence 1233444444555554 22222 566777777787777763311 000002467778888
Q ss_pred eEEeeecC
Q 045150 661 FLSVNLSD 668 (841)
Q Consensus 661 ~L~l~~~~ 668 (841)
.|+++.|.
T Consensus 144 ~Ld~~~n~ 151 (176)
T 1a9n_A 144 VLDFQKVK 151 (176)
T ss_dssp EETTEECC
T ss_pred eeCCCcCC
Confidence 88887773
No 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.98 E-value=4.6e-10 Score=104.19 Aligned_cols=130 Identities=17% Similarity=0.172 Sum_probs=84.3
Q ss_pred ccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-Ccccc-cCcccc
Q 045150 507 KRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQ-LPPETD 584 (841)
Q Consensus 507 ~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~-lp~~~~ 584 (841)
...++|+.|++++|. ++...+|..++.+++|++|++++| .+..+ ..++++++|++|+++ |.+.. +|..+.
T Consensus 14 ~~~~~l~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 14 RTPSDVKELVLDNSR------SNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp CCGGGCSEEECTTCB------CBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred CCCccCeEEEccCCc------CChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 345778889999988 652267777888899999999988 66666 668888899999998 66655 444333
Q ss_pred ccccccceecccccccCCccccccccccccccc-ch--hccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcce
Q 045150 585 MMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SW--IRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQF 661 (841)
Q Consensus 585 ~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~--~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~ 661 (841)
. +++|++|++++|. .. .+..++.+++|+.|++++|..... .+.....+..+++|+.
T Consensus 86 ~-------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 86 K-------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL--NDYRENVFKLLPQLTY 144 (149)
T ss_dssp H-------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS--TTHHHHHHHHCTTCCE
T ss_pred h-------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch--HHHHHHHHHHCCCccc
Confidence 3 3445555555555 22 235567777777777777653311 1111135666777777
Q ss_pred EEee
Q 045150 662 LSVN 665 (841)
Q Consensus 662 L~l~ 665 (841)
|+++
T Consensus 145 L~l~ 148 (149)
T 2je0_A 145 LDGY 148 (149)
T ss_dssp ETTB
T ss_pred ccCC
Confidence 7654
No 139
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.94 E-value=1.1e-08 Score=101.84 Aligned_cols=182 Identities=14% Similarity=0.063 Sum_probs=112.7
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccC-CCC-cEEEEEeCCccCHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKN-KFE-CCAWVSVSQDYQFQYLLLRIIK 244 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~~~~~i~~ 244 (841)
.+++|++..++.+..++..... ..+.|+|.+|+|||++|+.+++. ... .+. ..+.+..+.......+.. .+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~---~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 90 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNI---PHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRH-KIK 90 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCC---CCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHH-HHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCC---CeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHH-HHH
Confidence 4689999999999999876532 23899999999999999999873 322 222 234444433333222211 111
Q ss_pred HhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchHH-hhcCC
Q 045150 245 SFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNREV-AERSD 321 (841)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~~~ 321 (841)
.+.... ..-.+++.+||+||++.. ...+.+...+.....+.++|+||+.... .....
T Consensus 91 ~~~~~~--------------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~ 150 (226)
T 2chg_A 91 EFARTA--------------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (226)
T ss_dssp HHHTSC--------------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHhccc--------------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHH
Confidence 111100 001357899999999764 3455555555444456788888876531 11111
Q ss_pred CcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHH
Q 045150 322 EKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 322 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
.....+.+.+++.++..+++...+...... --.+....+++.++|.|..+..+
T Consensus 151 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 112578999999999999998876432221 12355677889999999865543
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.91 E-value=1.9e-09 Score=104.70 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=33.8
Q ss_pred eEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccC
Q 045150 513 RVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLP 580 (841)
Q Consensus 513 r~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp 580 (841)
++++++++. ++ .+|..+. .+|++|+|++| .+..+|..+.++++|++|+|+ +.+..++
T Consensus 13 ~~l~~~~~~------l~--~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~ 70 (193)
T 2wfh_A 13 TVVRCSNKG------LK--VLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLS 70 (193)
T ss_dssp TEEECTTSC------CS--SCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred CEEEcCCCC------CC--cCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeC
Confidence 456666665 55 5554432 46666666666 556666666666666666666 4444444
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.87 E-value=2.2e-09 Score=104.30 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=29.3
Q ss_pred eEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcc--cCCCCCCCeeecC-Cccccc
Q 045150 513 RVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSS--IFNLPGLQTLDLS-RCIVQL 579 (841)
Q Consensus 513 r~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~--i~~L~~L~~L~L~-~~~~~l 579 (841)
++++++++. ++ .+|..+.. +|++|+|++| .+..+|.. ++++++|++|+|+ +.+..+
T Consensus 11 ~~l~~s~~~------l~--~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 69 (192)
T 1w8a_A 11 TTVDCTGRG------LK--EIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGI 69 (192)
T ss_dssp TEEECTTSC------CS--SCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCB
T ss_pred CEEEcCCCC------cC--cCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCc
Confidence 455555555 54 45544432 5566666665 44544432 5556666666666 444433
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=3.2e-08 Score=107.57 Aligned_cols=243 Identities=12% Similarity=0.103 Sum_probs=140.9
Q ss_pred hHHhccCceeeEEEeecCCcccccccccccch-hhccccCcceeeecCCCcCccccC-cccCCCCCCCeeecC-Cccccc
Q 045150 503 APLFKRFLLLRVLEIEESGYFSRMLFDNRLHN-KKLGKLIHLKYLGIRGTTFIRDFP-SSIFNLPGLQTLDLS-RCIVQL 579 (841)
Q Consensus 503 ~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p-~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~-~~~~~l 579 (841)
...|.++ +|+.+.|..+ ++ .++ ..|.++ +|+.+.+..+ +..++ ..+.++.+|+.++++ +.+..+
T Consensus 129 ~~aF~~~-~L~~i~l~~~-------i~--~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I 195 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-------LK--SIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKL 195 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-------CC--EECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEE
T ss_pred HhhcccC-CccEEEeCCC-------cc--EECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEe
Confidence 3445554 4666666544 22 222 234442 4666666653 34443 446666677777776 556666
Q ss_pred Cccccccccccceecc----cccccCCccccccccccccccc-chhccccccccCCCceEEeccCCCCcCcccccHHHHh
Q 045150 580 PPETDMMRELRHLIGK----LIGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIA 654 (841)
Q Consensus 580 p~~~~~L~~L~~L~~~----~~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~ 654 (841)
|.......+|+.+... ..+...+.++++|+.+.+..+- ......|.. .+|+.+.+..+ ...+....+.
T Consensus 196 ~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~------i~~I~~~aF~ 268 (401)
T 4fdw_A 196 PASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG------VTNIASRAFY 268 (401)
T ss_dssp CTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT------CCEECTTTTT
T ss_pred chhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC------ccEEChhHhh
Confidence 6654445666665321 1122236677777777765433 222334444 67888888543 2222226777
Q ss_pred ccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCCCCccccccCCCccEEEEEeccCCCCChhhhh
Q 045150 655 KLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTTLPKDMHVLLPNLECLSLKVVLPEENPMPALE 734 (841)
Q Consensus 655 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~ 734 (841)
++++|+.+.+.++.... .....+ .-..+..|++|+.+.+..+...++...+.-|++|+.|.|..+ ++......|.
T Consensus 269 ~c~~L~~l~l~~~~~~~---~~~~~I-~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~ 343 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFND---DPEAMI-HPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN 343 (401)
T ss_dssp TCTTCCEEEEESSCCCC---CTTCEE-CTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred CCCCCCEEEeCCccccC---CcccEE-CHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence 88999999998764321 011112 223477888999999887666666655555689999999655 5555566788
Q ss_pred hcccCCeEEEecccCCCCCccccceEEcCCCcc-cccceecccc
Q 045150 735 MLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFP-LLEILLLDAV 777 (841)
Q Consensus 735 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~-~L~~L~l~~~ 777 (841)
++ +|+.+++.+|.+.... . ....+++ ++..|.+-..
T Consensus 344 ~~-~L~~l~l~~n~~~~l~---~---~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 344 NT-GIKEVKVEGTTPPQVF---E---KVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SS-CCCEEEECCSSCCBCC---C---SSCCCSCTTCCEEEECGG
T ss_pred CC-CCCEEEEcCCCCcccc---c---ccccCCCCCccEEEeCHH
Confidence 88 9999999887443211 0 1122343 5667776654
No 143
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.83 E-value=1.1e-09 Score=101.63 Aligned_cols=87 Identities=25% Similarity=0.233 Sum_probs=57.2
Q ss_pred CCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccc-cCc
Q 045150 481 NSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRD-FPS 559 (841)
Q Consensus 481 ~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~-lp~ 559 (841)
.++++.|.+.++.... ..++..+..+++|++|++++|. ++ .. ..++.+++|++|+|++| .+.. +|.
T Consensus 16 ~~~l~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~------l~--~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVG------LT--SI-ANLPKLNKLKKLELSDN-RVSGGLEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBT---TBCCSCCTTCTTCCEEECTTSC------CC--CC-TTCCCCTTCCEEECCSS-CCCSCTHH
T ss_pred CccCeEEEccCCcCCh---hHHHHHHhhcCCCcEEECcCCC------CC--Cc-hhhhcCCCCCEEECCCC-cccchHHH
Confidence 4566777776665420 1233456677778888888877 66 34 56777788888888877 4554 666
Q ss_pred ccCCCCCCCeeecC-CcccccC
Q 045150 560 SIFNLPGLQTLDLS-RCIVQLP 580 (841)
Q Consensus 560 ~i~~L~~L~~L~L~-~~~~~lp 580 (841)
.++.+++|++|+++ |.+..+|
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~ 104 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLS 104 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHH
T ss_pred HhhhCCCCCEEECCCCcCCChH
Confidence 66667888888887 5555443
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.82 E-value=3.3e-09 Score=101.41 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=89.7
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCc
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPS 559 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~ 559 (841)
.+.+++.|.+.++.... ++.+...+++|++|++++|. ++ .+ ..++.+++|++|+|++| .+..+|.
T Consensus 17 ~~~~L~~L~l~~n~l~~-----i~~~~~~~~~L~~L~Ls~N~------l~--~~-~~l~~l~~L~~L~Ls~N-~l~~~~~ 81 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNE------IR--KL-DGFPLLRRLKTLLVNNN-RICRIGE 81 (176)
T ss_dssp CTTSCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSC------CC--EE-CCCCCCSSCCEEECCSS-CCCEECS
T ss_pred CcCCceEEEeeCCCCch-----hHHhhhcCCCCCEEECCCCC------CC--cc-cccccCCCCCEEECCCC-cccccCc
Confidence 67788999988887642 23333444599999999999 87 45 57899999999999999 7888886
Q ss_pred cc-CCCCCCCeeecC-CcccccCc--cccccccccceecccccccCCccccccccccccccc-chhcc----ccccccCC
Q 045150 560 SI-FNLPGLQTLDLS-RCIVQLPP--ETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SWIRV----NTAKLVNL 630 (841)
Q Consensus 560 ~i-~~L~~L~~L~L~-~~~~~lp~--~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~~~~----~l~~l~~L 630 (841)
.+ ..+++|++|+++ |.+..+|. .+..+ ++|+.|++.+|. ...+. .+..+++|
T Consensus 82 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l-------------------~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSLVELGDLDPLASL-------------------KSLTYLCILRNPVTNKKHYRLYVIYKVPQV 142 (176)
T ss_dssp CHHHHCTTCCEEECCSCCCCCGGGGGGGGGC-------------------TTCCEEECCSSGGGGSTTHHHHHHHHCTTC
T ss_pred chhhcCCCCCEEECCCCcCCcchhhHhhhcC-------------------CCCCEEEecCCCCCCcHhHHHHHHHHCCcc
Confidence 65 899999999999 67766665 44444 445555555554 22222 25667777
Q ss_pred CceEEeccC
Q 045150 631 RELHIVGGD 639 (841)
Q Consensus 631 ~~L~l~~~~ 639 (841)
+.|+++.+.
T Consensus 143 ~~Ld~~~n~ 151 (176)
T 1a9n_A 143 RVLDFQKVK 151 (176)
T ss_dssp SEETTEECC
T ss_pred ceeCCCcCC
Confidence 777776654
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.79 E-value=1.4e-10 Score=113.48 Aligned_cols=113 Identities=20% Similarity=0.145 Sum_probs=66.0
Q ss_pred cchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-CcccccCccccccccccceecccccccCCcccccccc
Q 045150 532 LHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQLPPETDMMRELRHLIGKLIGTLPIENLTNLQT 610 (841)
Q Consensus 532 ~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~ 610 (841)
.+|..++.+++|++|+|++| .+..+| .+.++++|++|+++ |.+..+|..+..+++|++|
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L------------------ 98 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL------------------ 98 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE------------------
T ss_pred hhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEE------------------
Confidence 34447778888888888888 667777 67788888888888 6666666655444444444
Q ss_pred cccccccchhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCC
Q 045150 611 LKYVRCKSWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDG 669 (841)
Q Consensus 611 L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~ 669 (841)
++.+|.-.....+..+++|+.|++++|... ..+.. ..+..+++|+.|++++|.+
T Consensus 99 -~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~---~~~~~-~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 99 -WISYNQIASLSGIEKLVNLRVLYMSNNKIT---NWGEI-DKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp -EEEEEECCCHHHHHHHHHSSEEEESEEECC---CHHHH-HHHTTTTTCSEEEECSCHH
T ss_pred -ECcCCcCCcCCccccCCCCCEEECCCCcCC---chhHH-HHHhcCCCCCEEEecCCcc
Confidence 444443111124555556666666555422 11100 3455556666666666544
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=1.6e-08 Score=107.41 Aligned_cols=223 Identities=13% Similarity=0.010 Sum_probs=130.8
Q ss_pred chhHHhcc--------CceeeEEEeecCCcccccccccccch-hhccccCcceeeecCCCcCccccC-cccCCCCCCCee
Q 045150 501 DLAPLFKR--------FLLLRVLEIEESGYFSRMLFDNRLHN-KKLGKLIHLKYLGIRGTTFIRDFP-SSIFNLPGLQTL 570 (841)
Q Consensus 501 ~~~~~~~~--------~~~Lr~L~L~~~~~~~~~~l~~~~~p-~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L 570 (841)
.....|.+ |++|+.|+|.+ . ++ .++ ..|.+|++|+.|++++| .+..++ ..+.++.++.++
T Consensus 84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~------i~--~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 84 VPAYAFSNVVNGVTKGKQTLEKVILSE-K------IK--NIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFI 153 (329)
T ss_dssp ECTTTTEEEETTEEEECTTCCC-CBCT-T------CC--EECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEE
T ss_pred cCHHHhcccccccccccCCCcEEECCc-c------cc--chhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEe
Confidence 34567888 99999999998 6 66 444 56899999999999999 555554 567777777777
Q ss_pred ecCC-cc----cccC-ccccccccccceecccccccCCccccccccccccccc---chhccccccccCCCceEEeccCCC
Q 045150 571 DLSR-CI----VQLP-PETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK---SWIRVNTAKLVNLRELHIVGGDGQ 641 (841)
Q Consensus 571 ~L~~-~~----~~lp-~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~ 641 (841)
.+.. .. ..+. ..+..+.+|+. .+.+.... ......-....++..+.+.+.-.
T Consensus 154 ~~~~~~~~~~~~~i~~~~f~~~~~L~~------------------~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~- 214 (329)
T 3sb4_A 154 PLGSSDAYRFKNRWEHFAFIEGEPLET------------------TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLD- 214 (329)
T ss_dssp CTTCTHHHHTSTTTTTSCEEESCCCEE------------------EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCC-
T ss_pred cCcchhhhhccccccccccccccccce------------------eEEecCCCcHHHHHhhcccCccccceEEEeeeec-
Confidence 7663 11 1111 11222222221 11111111 11111112345566666654421
Q ss_pred CcCcccccHHHH-hccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCCCCccccccCCCcc-EEE
Q 045150 642 SMGEMEFSFESI-AKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTTLPKDMHVLLPNLE-CLS 719 (841)
Q Consensus 642 ~~g~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~-~L~ 719 (841)
.... ..+ ..+++|+.|+|.+|.+.. + .-..+..|++|+.+++..+...++...+.-+++|+ .|.
T Consensus 215 ---~~~~--~~l~~~~~~L~~l~L~~n~i~~--------I-~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 215 ---NADF--KLIRDYMPNLVSLDISKTNATT--------I-PDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp ---HHHH--HHHHHHCTTCCEEECTTBCCCE--------E-CTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEE
T ss_pred ---HHHH--HHHHHhcCCCeEEECCCCCcce--------e-cHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEE
Confidence 1111 222 247888888888764332 2 11236677788888888876666666555568888 888
Q ss_pred EEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCccccccee
Q 045150 720 LKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILL 773 (841)
Q Consensus 720 L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~ 773 (841)
|.+ .++......|.+|++|+.|+++.|.++.... ....++++|+.+.
T Consensus 281 l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~------~aF~~~~~L~~ly 327 (329)
T 3sb4_A 281 LPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD------ELFGNGVPSKLIY 327 (329)
T ss_dssp ECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT------TTTCTTCCCCEEE
T ss_pred Ecc-cceEEchhhhhCCccCCEEEeCCCccCccch------hhhcCCcchhhhc
Confidence 877 5555566778888888888887665443221 1123456676664
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.73 E-value=1.3e-07 Score=102.65 Aligned_cols=183 Identities=10% Similarity=0.083 Sum_probs=85.3
Q ss_pred cceeeecCCCcCccccCc-ccCCCCCCCeeecCCcccccCc-cccccccccceecc---cc--cccCCcccccccccccc
Q 045150 542 HLKYLGIRGTTFIRDFPS-SIFNLPGLQTLDLSRCIVQLPP-ETDMMRELRHLIGK---LI--GTLPIENLTNLQTLKYV 614 (841)
Q Consensus 542 ~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~lp~-~~~~L~~L~~L~~~---~~--~~~~i~~l~~L~~L~l~ 614 (841)
+|+.+.|..+ +..++. .+.+ .+|+.+.+..++..++. .|.++++|+.+... .. ....+. .++|+.+.+.
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTT-CCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC--ccEECHHhcCC-CCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4666666554 344433 3333 35666666654554443 45556666665321 11 111122 3555555554
Q ss_pred ccc-chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccc
Q 045150 615 RCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLV 693 (841)
Q Consensus 615 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~ 693 (841)
.+- ......|..+++|+.+.+..+- ...|. ..+.+ .+|+.+.+..+ ...+ .-..+..|++|+
T Consensus 212 ~~l~~I~~~aF~~~~~L~~l~l~~~l-~~I~~-----~aF~~-~~L~~i~lp~~---------i~~I-~~~aF~~c~~L~ 274 (401)
T 4fdw_A 212 VTLKEIGSQAFLKTSQLKTIEIPENV-STIGQ-----EAFRE-SGITTVKLPNG---------VTNI-ASRAFYYCPELA 274 (401)
T ss_dssp TTCCEECTTTTTTCTTCCCEECCTTC-CEECT-----TTTTT-CCCSEEEEETT---------CCEE-CTTTTTTCTTCC
T ss_pred CchheehhhHhhCCCCCCEEecCCCc-cCccc-----ccccc-CCccEEEeCCC---------ccEE-ChhHhhCCCCCC
Confidence 322 2233445566666666664321 11111 23333 45666666322 1111 122345566666
Q ss_pred eeEeccccCC------CCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEec
Q 045150 694 DLRLTGRMTT------LPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNF 746 (841)
Q Consensus 694 ~L~L~~~~~~------~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~ 746 (841)
.+.+.++... ++...+.-|++|+.+.|.+ .+.......|.+|++|+.+.|..
T Consensus 275 ~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 275 EVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp EEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred EEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 6666554332 3433333346666666653 24334445566666666666643
No 148
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=3.2e-08 Score=104.92 Aligned_cols=183 Identities=19% Similarity=0.186 Sum_probs=112.7
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccC-CCC-cEEEEEeCCccCHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKN-KFE-CCAWVSVSQDYQFQYLLLRIIK 244 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~~~~~i~~ 244 (841)
.+++|++..++.+..++..+.. ..+.|+|++|+||||+|+.+++. ... .+. .++++..+...... .+++++.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~---~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~-~i~~~~~ 94 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNM---PHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGID-VVRNQIK 94 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCC---CCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHH-HHHTHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCC---CeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChH-HHHHHHH
Confidence 4589999999999999876543 23889999999999999999983 322 121 24444444332322 2222222
Q ss_pred HhhhccccccCCCCCCCHHHHHHHHHHHc-cCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchH-HhhcC
Q 045150 245 SFNIISSAEEGGLENKSEEDLERCLYKSL-QGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNRE-VAERS 320 (841)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~ 320 (841)
.+.... ..+ .+++.++|+||++.. ..++.+...+.....++++|+||+... +....
T Consensus 95 ~~~~~~--------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l 154 (323)
T 1sxj_B 95 HFAQKK--------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPL 154 (323)
T ss_dssp HHHHBC--------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HHHhcc--------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHH
Confidence 222100 001 356899999999763 344445544443445678888886543 11111
Q ss_pred CCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchH-HHHHh
Q 045150 321 DEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLA-IVVLG 377 (841)
Q Consensus 321 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPla-i~~~~ 377 (841)
......+.+.+++.++..+++...+...... --.+....|++.++|.|.. +..+.
T Consensus 155 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 155 QSQCAILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhceEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1112689999999999999998876322211 1235567899999999954 44433
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.72 E-value=1.7e-08 Score=97.93 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=70.9
Q ss_pred eeeEEEeecCCcccccccccccchh--hccccCcceeeecCCCcCcccc-CcccCCCCCCCeeecC-CcccccCcccccc
Q 045150 511 LLRVLEIEESGYFSRMLFDNRLHNK--KLGKLIHLKYLGIRGTTFIRDF-PSSIFNLPGLQTLDLS-RCIVQLPPETDMM 586 (841)
Q Consensus 511 ~Lr~L~L~~~~~~~~~~l~~~~~p~--~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~-~~~~~lp~~~~~L 586 (841)
.|++|++++|. ++ .++. .++.+++|++|+|++| .+..+ |..+.++++|++|+|+ +.+..++...
T Consensus 30 ~l~~L~l~~n~------i~--~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--- 97 (192)
T 1w8a_A 30 HTTELLLNDNE------LG--RISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEISNKM--- 97 (192)
T ss_dssp TCSEEECCSCC------CC--SBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS---
T ss_pred CCCEEECCCCc------CC--ccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCcCCccCHHH---
Confidence 78889999988 77 5554 3788899999999998 55554 7788889999999998 6666555431
Q ss_pred ccccceecccccccCCccccccccccccccc--chhccccccccCCCceEEeccCC
Q 045150 587 RELRHLIGKLIGTLPIENLTNLQTLKYVRCK--SWIRVNTAKLVNLRELHIVGGDG 640 (841)
Q Consensus 587 ~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~ 640 (841)
++.+++|++|++.+|. ...+..+..+++|+.|++++|..
T Consensus 98 ---------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 98 ---------------FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp ---------------STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ---------------hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 3444555555666555 23344566666666666666653
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.70 E-value=2.5e-08 Score=95.41 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=18.8
Q ss_pred CcceeeecCCCcCccccCc-ccCCCCCCCeeecC-CcccccC
Q 045150 541 IHLKYLGIRGTTFIRDFPS-SIFNLPGLQTLDLS-RCIVQLP 580 (841)
Q Consensus 541 ~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~-~~~~~lp 580 (841)
++|++|++++| .+..+|. .+.++++|++|+++ +.+..+|
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (177)
T 2o6r_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68 (177)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeC
Confidence 45555555555 3444433 23455555555555 4444333
No 151
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.69 E-value=2.7e-08 Score=96.49 Aligned_cols=103 Identities=25% Similarity=0.292 Sum_probs=69.8
Q ss_pred ceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccC-cccCCCCCCCeeecC-CcccccCccccccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFP-SSIFNLPGLQTLDLS-RCIVQLPPETDMMR 587 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~ 587 (841)
+.|++|+|++|. ++ .+|..+..+++|++|+|++| .+..++ ..+.++++|++|+|+ +.+..+|...
T Consensus 31 ~~l~~L~L~~n~------i~--~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~---- 97 (193)
T 2wfh_A 31 RDVTELYLDGNQ------FT--LVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT---- 97 (193)
T ss_dssp TTCCEEECCSSC------CC--SCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT----
T ss_pred CCCCEEECCCCc------Cc--hhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccCEeCHHH----
Confidence 478888999888 87 78888888899999999988 566665 568888999999998 6666665421
Q ss_pred cccceecccccccCCccccccccccccccc-chhc-cccccccCCCceEEeccC
Q 045150 588 ELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SWIR-VNTAKLVNLRELHIVGGD 639 (841)
Q Consensus 588 ~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~ 639 (841)
+..+++|+.|++.+|. ...+ ..+..+++|+.|++.+|.
T Consensus 98 --------------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 98 --------------FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp --------------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred --------------hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 3344455555555554 2222 235556666666666554
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.66 E-value=5.6e-10 Score=109.16 Aligned_cols=133 Identities=19% Similarity=0.217 Sum_probs=94.0
Q ss_pred chhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcccCCCCCCCeeecC-Cccccc
Q 045150 501 DLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLS-RCIVQL 579 (841)
Q Consensus 501 ~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~-~~~~~l 579 (841)
.++..+..+++|++|++++|. ++ .+| .+..+++|++|++++| .+..+|..+..+++|++|+++ |.+..+
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~------l~--~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNN------IE--KIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEE------ES--CCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCH
T ss_pred hhhHHHhcCCCCCEEECCCCC------Cc--ccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcC
Confidence 344578899999999999998 88 677 8899999999999999 788999888888999999999 666666
Q ss_pred CccccccccccceecccccccCCccccccccccccccc-chh--ccccccccCCCceEEeccCCCCcCc-----ccccHH
Q 045150 580 PPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SWI--RVNTAKLVNLRELHIVGGDGQSMGE-----MEFSFE 651 (841)
Q Consensus 580 p~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~~--~~~l~~l~~L~~L~l~~~~~~~~g~-----~~~~~~ 651 (841)
| .+..+ ++|+.|++.+|. ... ...+..+++|+.|++++|....... ......
T Consensus 109 ~-~~~~l-------------------~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 109 S-GIEKL-------------------VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp H-HHHHH-------------------HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred C-ccccC-------------------CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 5 44444 455555555555 211 2356777788888887765320000 011113
Q ss_pred HHhccCCcceEE
Q 045150 652 SIAKLKNLQFLS 663 (841)
Q Consensus 652 ~l~~l~~L~~L~ 663 (841)
.+..+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 467788888876
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.56 E-value=1.1e-07 Score=90.86 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=65.0
Q ss_pred ceeeEEEeecCCcccccccccccch-hhccccCcceeeecCCCcCccccCcc-cCCCCCCCeeecC-CcccccCcccccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHN-KKLGKLIHLKYLGIRGTTFIRDFPSS-IFNLPGLQTLDLS-RCIVQLPPETDMM 586 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p-~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~-~~~~~lp~~~~~L 586 (841)
++|+.|++++|. ++ .+| ..+..+++|++|+|++| .+..+|.. +.++++|++|+++ +.+..+|...
T Consensus 28 ~~l~~L~l~~n~------l~--~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~--- 95 (177)
T 2o6r_A 28 SSATRLELESNK------LQ--SLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGV--- 95 (177)
T ss_dssp TTCSEEECCSSC------CC--CCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---
T ss_pred CCCcEEEeCCCc------cc--EeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHH---
Confidence 578888888888 76 444 45678888888888888 66666654 5788888888888 6666665532
Q ss_pred ccccceecccccccCCccccccccccccccc-chhcc-ccccccCCCceEEeccC
Q 045150 587 RELRHLIGKLIGTLPIENLTNLQTLKYVRCK-SWIRV-NTAKLVNLRELHIVGGD 639 (841)
Q Consensus 587 ~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~ 639 (841)
++.+++|++|++.+|. ...+. .+..+++|+.|++.+|.
T Consensus 96 ---------------~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 96 ---------------FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ---------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------------hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 2334444444444443 21222 23445555566655554
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.54 E-value=1e-07 Score=90.33 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=61.0
Q ss_pred eeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCcccc-CcccCCCCCCCeeecC-CcccccCccccccccc
Q 045150 512 LRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDF-PSSIFNLPGLQTLDLS-RCIVQLPPETDMMREL 589 (841)
Q Consensus 512 Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~-~~~~~lp~~~~~L~~L 589 (841)
.++|+++++. ++ .+|..+. .+|++|+|++| .+..+ |..+.++++|++|+|+ +.+..+|...
T Consensus 11 ~~~l~~s~n~------l~--~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~------ 73 (170)
T 3g39_A 11 GTTVDCSGKS------LA--SVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV------ 73 (170)
T ss_dssp TTEEECTTSC------CS--SCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT------
T ss_pred CCEEEeCCCC------cC--ccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhh------
Confidence 4677788777 76 6776553 77788888888 55555 5567778888888888 6666666543
Q ss_pred cceecccccccCCccccccccccccccc-chhc-cccccccCCCceEEeccCC
Q 045150 590 RHLIGKLIGTLPIENLTNLQTLKYVRCK-SWIR-VNTAKLVNLRELHIVGGDG 640 (841)
Q Consensus 590 ~~L~~~~~~~~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~ 640 (841)
+..+++|+.|++.+|. ...+ ..+..+++|+.|++++|..
T Consensus 74 ------------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 74 ------------FDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp ------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ------------ccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 2334444555555444 2222 2355556666666665543
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.53 E-value=1.4e-07 Score=89.73 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=35.0
Q ss_pred eEEEeecCCcccccccccccchhhccccCcceeeecCCCcCcccc-CcccCCCCCCCeeecC-CcccccCcc
Q 045150 513 RVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDF-PSSIFNLPGLQTLDLS-RCIVQLPPE 582 (841)
Q Consensus 513 r~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~-~~~~~lp~~ 582 (841)
+.++++++. ++ .+|..+. .+|++|+|++| .+..+ |..+.++++|++|+|+ +.+..+|..
T Consensus 15 ~~l~~~~n~------l~--~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~ 75 (174)
T 2r9u_A 15 TLVNCQNIR------LA--SVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG 75 (174)
T ss_dssp SEEECCSSC------CS--SCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cEEEeCCCC------CC--ccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChh
Confidence 456666666 55 5665443 56666666666 44444 4456666666666666 555555543
No 156
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=2.6e-07 Score=98.01 Aligned_cols=183 Identities=16% Similarity=0.103 Sum_probs=111.5
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCC-C-CcEEEEEeCCccCHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNK-F-ECCAWVSVSQDYQFQYLLLRIIK 244 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F-~~~~wv~vs~~~~~~~~~~~i~~ 244 (841)
.+++|++..++.+..++..+.. ..+.|+|++|+||||+|+.+++. +... + ...+.+..+..... +.++..+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~---~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 98 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSM---PHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGI-NVIREKVK 98 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCC---CEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHH-HTTHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCC---CeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCch-HHHHHHHH
Confidence 4689999999999998876542 24899999999999999999983 3221 1 12333433321111 11111111
Q ss_pred HhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchHH-hhcCC
Q 045150 245 SFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNREV-AERSD 321 (841)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~~~ 321 (841)
.+.... ....+++.++|+||++.. ..++.+...+.....++++|+||..... .....
T Consensus 99 ~~~~~~--------------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 99 EFARTK--------------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp HHHHSC--------------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHhhC--------------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 110000 001267889999999754 4555666555444556788888865431 11111
Q ss_pred CcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHh
Q 045150 322 EKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLG 377 (841)
Q Consensus 322 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 377 (841)
.....+.+.+++.++...++...+..... .--.+....|++.++|.|..+..+.
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 11257899999999999999877643322 1223566788899999998665443
No 157
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.42 E-value=4.7e-08 Score=105.16 Aligned_cols=160 Identities=13% Similarity=0.139 Sum_probs=79.3
Q ss_pred ceeeEEEeecccccccccchhHHhc-cCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCcccc----
Q 045150 483 LSRSLLFFNENVTLFEERDLAPLFK-RFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDF---- 557 (841)
Q Consensus 483 ~lr~L~l~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~l---- 557 (841)
+++.|.+.++.........+...+. ..+.|+.|+|++|. +++.........+++|++|+|++| .+...
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~ 145 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ------LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKD 145 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC------CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC------CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHH
Confidence 4455555554442211112223333 23577777777777 553122222234567777777777 44321
Q ss_pred -Cccc-CCCCCCCeeecC-Ccccc-----cCccccccccccceecccccccCCccccccccccccccc------chhccc
Q 045150 558 -PSSI-FNLPGLQTLDLS-RCIVQ-----LPPETDMMRELRHLIGKLIGTLPIENLTNLQTLKYVRCK------SWIRVN 623 (841)
Q Consensus 558 -p~~i-~~L~~L~~L~L~-~~~~~-----lp~~~~~L~~L~~L~~~~~~~~~i~~l~~L~~L~l~~~~------~~~~~~ 623 (841)
...+ ...++|++|+|+ |.+.. ++.. +..+++|++|++++|. ......
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------------------L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG-------------------LAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH-------------------HHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHH-------------------HhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 1112 245677777777 44332 1111 1233445555555554 112344
Q ss_pred cccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCC
Q 045150 624 TAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDG 669 (841)
Q Consensus 624 l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~ 669 (841)
+...++|+.|++++|.....|...+. ..+...++|+.|+|++|.+
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~-~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALA-RAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHH-HHHHHCSSCCEEECTTSSC
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHH-HHHHhCCCCCEEeccCCCC
Confidence 55566677777766654433222333 4455566677777766644
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.1e-06 Score=90.84 Aligned_cols=172 Identities=10% Similarity=0.016 Sum_probs=102.6
Q ss_pred CCcccCCChHHHHHHHhcC-CCCCeEEEEEEccCCCcHHHHHHHHhcCcccc---CCC-C-cEEEEEeCCccCHHHHHHH
Q 045150 168 NPVGFEDDTDVLLSKLLAG-DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVK---NKF-E-CCAWVSVSQDYQFQYLLLR 241 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F-~-~~~wv~vs~~~~~~~~~~~ 241 (841)
.+.||+++.+++...|... .......+.|+|++|.|||++|+.|++.-... ... . ..+.|++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 3789999999998887642 11144678999999999999999999842111 111 1 3567777777888999999
Q ss_pred HHHHhhhccccccCCCCCCCHHHHHHHHHHH--ccCceEEEEEecCCChhhHHHHHhhC--CCCCCC-cEEEEEecch--
Q 045150 242 IIKSFNIISSAEEGGLENKSEEDLERCLYKS--LQGKTYLMVLDDVWRKVDWENLRRAF--PDNKNG-SRVIITTRNR-- 314 (841)
Q Consensus 242 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVlDdv~~~~~~~~l~~~l--~~~~~g-s~ilvTtR~~-- 314 (841)
|++++.+.... .......+...+.+. -+++++++|||+++....-+.+...+ +....+ ..||.++...
T Consensus 101 I~~~L~g~~~~-----~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 101 IWFAISKENLC-----GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHSCCC-------CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHhcCCCCC-----chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 99999653211 111223333333332 14678999999997642111222211 111111 2233333322
Q ss_pred ---HH----hhcCCCcceeEecCCCChhHHHHHHHhHhc
Q 045150 315 ---EV----AERSDEKTYVHKLRFLRGDESWLLFCEKAF 346 (841)
Q Consensus 315 ---~v----~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 346 (841)
.+ ...+. ...+.+.+++.++-.+++.+++-
T Consensus 176 ~~~~L~~~v~SR~~--~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAH--FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTT--EEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC--ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 22222 15789999999999998887763
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.35 E-value=3.5e-06 Score=91.02 Aligned_cols=200 Identities=13% Similarity=0.103 Sum_probs=110.2
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
.+++|++..++.+...+..+.. ...+.|+|..|+||||+|+.+.+.......+.. ..+... .....+...-
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~~~~ 86 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRI--HHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIEQGR 86 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCC--CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHHTSC
T ss_pred hhccCcHHHHHHHHHHHHhCCC--CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHhccC
Confidence 4599999999999999876542 247889999999999999999873211111100 000000 0001111000
Q ss_pred hhcccc-ccCC-CCCCCHHHHHHHHHHH-ccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchH-HhhcC
Q 045150 247 NIISSA-EEGG-LENKSEEDLERCLYKS-LQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNRE-VAERS 320 (841)
Q Consensus 247 ~~~~~~-~~~~-~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~ 320 (841)
...... ...+ ........+...+... ..+++.++|+||++.. ...+.+...+.....+..+|++|.... +....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 000000 0000 0011112222221111 1356789999999753 455666665554444667777775432 11111
Q ss_pred CCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHh
Q 045150 321 DEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLG 377 (841)
Q Consensus 321 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 377 (841)
......+.+.+++.++..+++...+-..... --.+....|++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1112689999999999999988765321111 123456789999999998776544
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.34 E-value=3.3e-07 Score=86.71 Aligned_cols=82 Identities=22% Similarity=0.132 Sum_probs=44.7
Q ss_pred cccceeEeccccC-CC-CccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcc
Q 045150 690 QRLVDLRLTGRMT-TL-PKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFP 767 (841)
Q Consensus 690 ~~L~~L~L~~~~~-~~-p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~ 767 (841)
++|+.|+|++|.. .+ |..+..+ ++|+.|+|++|.++..++..+..+++|+.|+|++|++++.... ....++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~------~~~~l~ 102 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRL-TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG------AFDNLK 102 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------TTTTCT
T ss_pred CCCcEEEcCCCcCCccChhhhcCc-ccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHH------HhcCCC
Confidence 4566666666532 23 3334444 6666666666666555555556666666666666655443210 123455
Q ss_pred cccceeccccc
Q 045150 768 LLEILLLDAVE 778 (841)
Q Consensus 768 ~L~~L~l~~~~ 778 (841)
+|+.|++++|+
T Consensus 103 ~L~~L~L~~N~ 113 (170)
T 3g39_A 103 SLTHIWLLNNP 113 (170)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 66666666665
No 161
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.31 E-value=7.7e-07 Score=84.48 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=53.6
Q ss_pred ceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccCcc-cCCCCCCCeeecC-CcccccCcc-cccc
Q 045150 510 LLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFPSS-IFNLPGLQTLDLS-RCIVQLPPE-TDMM 586 (841)
Q Consensus 510 ~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~-~~~~~lp~~-~~~L 586 (841)
+.|++|+|++|. ++. ..|..+.++++|++|+|++| .+..+|.. +.++++|++|+|+ +.+..+|.. +..+
T Consensus 33 ~~L~~L~Ls~N~------l~~-~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 104 (174)
T 2r9u_A 33 TDKQRLWLNNNQ------ITK-LEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNL 104 (174)
T ss_dssp TTCSEEECCSSC------CCC-CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEEeCCCC------ccc-cCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccceeCHHHhccc
Confidence 567777777777 662 33566777777777777777 66666654 4677777777777 666667664 6677
Q ss_pred cccccee
Q 045150 587 RELRHLI 593 (841)
Q Consensus 587 ~~L~~L~ 593 (841)
++|++|+
T Consensus 105 ~~L~~L~ 111 (174)
T 2r9u_A 105 KSLTHIY 111 (174)
T ss_dssp TTCSEEE
T ss_pred cCCCEEE
Confidence 7777774
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.30 E-value=4.6e-07 Score=87.63 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=38.8
Q ss_pred CCCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 166 EENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
-..++||+++++++.+.+.... ...+.|+|.+|+|||++|+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT---KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS---SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCC---CCceEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999987643 345789999999999999999873
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.30 E-value=1.5e-08 Score=109.02 Aligned_cols=60 Identities=10% Similarity=0.073 Sum_probs=36.5
Q ss_pred CceeeEEEeecCCcccccccccccchhhccc-----cCcceeeecCCCcCccc-cCccc-CCCCCCCeeecC-Ccc
Q 045150 509 FLLLRVLEIEESGYFSRMLFDNRLHNKKLGK-----LIHLKYLGIRGTTFIRD-FPSSI-FNLPGLQTLDLS-RCI 576 (841)
Q Consensus 509 ~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~-----L~~L~~L~L~~~~~~~~-lp~~i-~~L~~L~~L~L~-~~~ 576 (841)
++.|+.|+|++|. ++. .....+.. ..+|++|+|++| .+.. -...+ ..+.+|++|+|+ |.+
T Consensus 71 ~~~L~~L~Ls~n~------l~~-~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 71 LSSLRQLNLAGVR------MTP-VKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSL 138 (372)
T ss_dssp HTTCCEEECTTSC------CCH-HHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred HhhCCEEEecCCC------CCH-HHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCC
Confidence 4568899999988 653 22222322 368899999988 4432 11122 245678888888 543
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.25 E-value=8.1e-06 Score=88.82 Aligned_cols=124 Identities=9% Similarity=0.033 Sum_probs=61.1
Q ss_pred hhHHhccCceeeEEEeecCCcccccccccccc-hhhccccCcceeeecCCCcCccccC-cccCCCCCCCeeecCCccccc
Q 045150 502 LAPLFKRFLLLRVLEIEESGYFSRMLFDNRLH-NKKLGKLIHLKYLGIRGTTFIRDFP-SSIFNLPGLQTLDLSRCIVQL 579 (841)
Q Consensus 502 ~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~-p~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~l 579 (841)
-...|.+|.+|+.+.|..+ ++ .+ ...|.++.+|+.++|..+ +..++ ..+.++.+|+.+.+..++..+
T Consensus 63 g~~AF~~c~~L~~i~lp~~-------i~--~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~l~~i 131 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-------VR--EIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLMLKSI 131 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-------CC--EECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTTCCEE
T ss_pred HHHHhhCCCCceEEEeCCC-------cc--CcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCceeee
Confidence 3456777777777777543 33 23 345667777777777654 44443 346667777776665444333
Q ss_pred Cc-cccccccccceec---ccccccCCccccccccccccccc-chhccccccccCCCceEEe
Q 045150 580 PP-ETDMMRELRHLIG---KLIGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIV 636 (841)
Q Consensus 580 p~-~~~~L~~L~~L~~---~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~ 636 (841)
.. .+..+..+..... ...+...+.++++|+.+.+...- ......+..+.+|+.+.+.
T Consensus 132 ~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp CTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCC
T ss_pred cceeeecccccccccCccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcC
Confidence 32 2222222221111 11112225555555555543322 2222334455555555543
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.18 E-value=4.2e-06 Score=88.17 Aligned_cols=179 Identities=13% Similarity=0.081 Sum_probs=109.7
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccc-cCCCC-cEEEEEeCCccCHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDV-KNKFE-CCAWVSVSQDYQFQYLLLRIIK 244 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~vs~~~~~~~~~~~i~~ 244 (841)
.+++|++..++.+..++..+.. ..+.++|++|+|||++|+.+++. . ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~---~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~--------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNI---PHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGI--------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCC---CCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEETTSTTCT---------
T ss_pred HHHhCCHHHHHHHHHHHhCCCC---CeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEeCccccCh---------
Confidence 3589999999888888766432 23889999999999999999873 2 11111 1233333321110
Q ss_pred HhhhccccccCCCCCCCHHHHHHHHHHH--c-cCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchH-Hhh
Q 045150 245 SFNIISSAEEGGLENKSEEDLERCLYKS--L-QGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNRE-VAE 318 (841)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~ 318 (841)
. ............ + .+++.++|+|+++.. ...+.+...+.....+.++|+||.... +..
T Consensus 83 -------------~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~ 147 (319)
T 2chq_A 83 -------------D--VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIE 147 (319)
T ss_dssp -------------T--TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCH
T ss_pred -------------H--HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcch
Confidence 0 011111111111 1 356889999999754 345566666665556677888776543 111
Q ss_pred cCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHH
Q 045150 319 RSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 319 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
........+.+.+++.++...++...+...... --.+....+++.++|.+..+...
T Consensus 148 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 148 PIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp HHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 111112589999999999999988776433221 12345677888999998865443
No 166
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.16 E-value=7.5e-07 Score=94.91 Aligned_cols=19 Identities=16% Similarity=-0.001 Sum_probs=13.1
Q ss_pred chhhccccCcceeeecCCC
Q 045150 533 HNKKLGKLIHLKYLGIRGT 551 (841)
Q Consensus 533 ~p~~i~~L~~L~~L~L~~~ 551 (841)
+..++.++++|+.|.+.+.
T Consensus 131 L~~s~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDI 149 (362)
T ss_dssp HHTTHHHHTTCSEEEECCC
T ss_pred HHHhhhhcchhhheeecCc
Confidence 4455667788888877654
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.12 E-value=8.6e-06 Score=88.61 Aligned_cols=58 Identities=14% Similarity=0.227 Sum_probs=25.8
Q ss_pred CCCcccceeEeccccCCCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEe
Q 045150 687 SHCQRLVDLRLTGRMTTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLN 745 (841)
Q Consensus 687 ~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~ 745 (841)
..|.+|+.+.+..+...++...+.-|.+|+.++|..+ ++......|.+|.+|+.+.|.
T Consensus 294 ~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 294 YGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCC
T ss_pred cccccccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEEC
Confidence 3444555555544433333332222355555555432 222233445555555555553
No 168
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.10 E-value=1.9e-06 Score=86.74 Aligned_cols=171 Identities=13% Similarity=0.088 Sum_probs=95.7
Q ss_pred CCCcccC---CChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHH
Q 045150 167 ENPVGFE---DDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRII 243 (841)
Q Consensus 167 ~~~vGr~---~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 243 (841)
++++|.. ...+.+..+.... ....+.|+|.+|+||||||+.+++ ........+.|++++.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~~-------- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD---GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGIHASI-------- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC---SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGGS--------
T ss_pred hhccCCCCCHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHHH--------
Confidence 3577643 2234444444332 235788999999999999999998 33333345677765431100
Q ss_pred HHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChh--h--HHHHHhhCCC-CCCC-cEEEEEecchH--
Q 045150 244 KSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV--D--WENLRRAFPD-NKNG-SRVIITTRNRE-- 315 (841)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~--~~~l~~~l~~-~~~g-s~ilvTtR~~~-- 315 (841)
. . ..+ +.+ .++-+||+||++... . .+.+...+.. ...+ .++|+||+...
T Consensus 95 -------------~-----~---~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 95 -------------S-----T---ALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPME 151 (242)
T ss_dssp -------------C-----G---GGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTT
T ss_pred -------------H-----H---HHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHH
Confidence 0 0 000 011 345689999997542 1 2223332211 0112 24777776322
Q ss_pred -------HhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHH
Q 045150 316 -------VAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 316 -------v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
+...+.. ...+++.+++.++..+++...+..... .--.+....+++.+.|.+..+..+
T Consensus 152 ~~~~~~~l~~r~~~-~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 152 AGFVLPDLVSRMHW-GLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp TTCCCHHHHHHHHH-SEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHhhhhhhhHhhc-CceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHH
Confidence 1111111 167899999999999999887642221 122456678888999988766543
No 169
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.07 E-value=9.7e-06 Score=83.85 Aligned_cols=179 Identities=12% Similarity=0.099 Sum_probs=98.0
Q ss_pred CCCcccCCChHHHHHHHhcC----------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAG----------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQ 236 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 236 (841)
++++|.+..++++.+.+... .......+.|+|++|+|||+||+.+++. .... .+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~~-- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELVK-- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHHH--
Confidence 46899999999988876431 0013346899999999999999999983 3222 22233221100
Q ss_pred HHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh-------------h---hHHHHHhhCC-
Q 045150 237 YLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK-------------V---DWENLRRAFP- 299 (841)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-------------~---~~~~l~~~l~- 299 (841)
.............+......++.+|+||+++.. . ....+...+.
T Consensus 90 -------------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 90 -------------------KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp -------------------CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred -------------------hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 000000112222222333456789999999642 1 1222222221
Q ss_pred -CCCCCcEEEEEecchHHhhc----CCCcceeEecCCCChhHHHHHHHhHhcCCCCC-CchhHHHHHHHHHHcCC-CchH
Q 045150 300 -DNKNGSRVIITTRNREVAER----SDEKTYVHKLRFLRGDESWLLFCEKAFRGTNR-EKGLEKLGREMVEKCDG-LPLA 372 (841)
Q Consensus 300 -~~~~gs~ilvTtR~~~v~~~----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~c~g-lPla 372 (841)
....+..||.||........ .+.-...+.+...+.++..+++..++...... ... ...+++.+.| .|-.
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAE 226 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHH
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHH
Confidence 12235667777765432110 01112578999999999999998876443222 112 3556666666 3434
Q ss_pred HHH
Q 045150 373 IVV 375 (841)
Q Consensus 373 i~~ 375 (841)
+..
T Consensus 227 i~~ 229 (285)
T 3h4m_A 227 LKA 229 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 170
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.07 E-value=1.3e-05 Score=84.59 Aligned_cols=178 Identities=21% Similarity=0.099 Sum_probs=104.3
Q ss_pred CCCcccCCChHHHHHHHhcCC--CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGD--EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIK 244 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 244 (841)
++++|++..++.+...+.... ......+.|+|++|+|||++|+.+++. ... ..+++..+......+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~------- 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGD------- 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHH-------
Confidence 569999999888888775310 012346889999999999999999883 322 233444333222111
Q ss_pred HhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChh--hHHHHHhhCCCC------------------CCC
Q 045150 245 SFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV--DWENLRRAFPDN------------------KNG 304 (841)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~------------------~~g 304 (841)
+...+...+ .+..+|+||+++... ....+...+... ..+
T Consensus 80 --------------------l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 80 --------------------LAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp --------------------HHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred --------------------HHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 111111111 245688899997542 233333222111 023
Q ss_pred cEEEEEecchH-HhhcCCCc-ceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHHhhh
Q 045150 305 SRVIITTRNRE-VAERSDEK-TYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVLGGL 379 (841)
Q Consensus 305 s~ilvTtR~~~-v~~~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 379 (841)
.++|.||.... +....... ...+.+.+++.++...++...+...... --.+....+++.+.|.|..+..+...
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~ 213 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRR 213 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 45666665432 21111111 1578999999999999988876433222 22356788999999999877665443
No 171
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.06 E-value=4.3e-06 Score=89.35 Aligned_cols=69 Identities=25% Similarity=0.208 Sum_probs=46.1
Q ss_pred hccCceeeEEEeec-CCcccccccccccch-hhccccCcceeeecCCCcCccccC-cccCCCCCCCeeecC-CcccccCc
Q 045150 506 FKRFLLLRVLEIEE-SGYFSRMLFDNRLHN-KKLGKLIHLKYLGIRGTTFIRDFP-SSIFNLPGLQTLDLS-RCIVQLPP 581 (841)
Q Consensus 506 ~~~~~~Lr~L~L~~-~~~~~~~~l~~~~~p-~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~-~~~~~lp~ 581 (841)
+..+.+|+.|+|++ |. ++ .+| ..|+.|++|++|+|++| .+..+| ..|.+|++|++|+|+ |.+..+|.
T Consensus 27 l~~~~~L~~L~l~~~n~------l~--~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 27 LPGAENLTELYIENQQH------LQ--HLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp SCSCSCCSEEECCSCSS------CC--EECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCCCCeeEEEccCCCC------CC--CcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 66777777777775 66 66 344 56777777777777777 455443 456777777777777 56666665
Q ss_pred cc
Q 045150 582 ET 583 (841)
Q Consensus 582 ~~ 583 (841)
.+
T Consensus 98 ~~ 99 (347)
T 2ifg_A 98 KT 99 (347)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 172
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.04 E-value=0.00013 Score=74.61 Aligned_cols=171 Identities=13% Similarity=0.109 Sum_probs=91.6
Q ss_pred CCCcccCCChHHHHHH-------HhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHH
Q 045150 167 ENPVGFEDDTDVLLSK-------LLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLL 239 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~-------L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 239 (841)
..++|.....+++... +..........+.|+|.+|+|||++|+.+++. .... . +.+..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~--~-~~i~~~~~~------ 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFP--F-IKICSPDKM------ 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCS--E-EEEECGGGC------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCC--E-EEEeCHHHh------
Confidence 4578887777666662 32222225678999999999999999999983 2222 1 222222100
Q ss_pred HHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh------------hhHHHHHhhCCC---CCCC
Q 045150 240 LRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK------------VDWENLRRAFPD---NKNG 304 (841)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~------------~~~~~l~~~l~~---~~~g 304 (841)
.... .......+...+......+..+|+||+++.. ...+.+...+.. ....
T Consensus 102 -------~g~~-------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~ 167 (272)
T 1d2n_A 102 -------IGFS-------ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRK 167 (272)
T ss_dssp -------TTCC-------HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCE
T ss_pred -------cCCc-------hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCC
Confidence 0000 0000012222333333567889999998542 112333333332 2223
Q ss_pred cEEEEEecchHHhhc---CCCcceeEecCCCCh-hHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCC
Q 045150 305 SRVIITTRNREVAER---SDEKTYVHKLRFLRG-DESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGL 369 (841)
Q Consensus 305 s~ilvTtR~~~v~~~---~~~~~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~gl 369 (841)
..||.||........ ...-...+.++++++ ++...++.... . -..+....|++.+.|.
T Consensus 168 ~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~----~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 168 LLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N----FKDKERTTIAQQVKGK 229 (272)
T ss_dssp EEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C----SCHHHHHHHHHHHTTS
T ss_pred EEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C----CCHHHHHHHHHHhcCC
Confidence 446667776643322 111126788999988 66666655431 1 1134466788888773
No 173
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.04 E-value=1.2e-05 Score=86.19 Aligned_cols=193 Identities=11% Similarity=0.074 Sum_probs=109.7
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCC-cEEEEEeCCccCHHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFE-CCAWVSVSQDYQFQYLLLRIIKS 245 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~ 245 (841)
.+++|+++.++.+..++..+.. ..+.|+|++|+||||+|+.+.+.-.....+. .+..+..+...... .+++.+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~---~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 112 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANL---PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS-IVREKVKN 112 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTC---CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH-HHTTHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCC---CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH-HHHHHHHH
Confidence 5689999999999999876542 2288999999999999999988311111111 13334433322222 22222322
Q ss_pred hhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchH-HhhcCCC
Q 045150 246 FNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNRE-VAERSDE 322 (841)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~~~ 322 (841)
+...... . ... . .....-.+++-+|++|+++.. .....+...+.......++|++|.... +......
T Consensus 113 ~~~~~~~---~--~~~-~----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 113 FARLTVS---K--PSK-H----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp HHHSCCC---C--CCT-T----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred Hhhhccc---c--cch-h----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 2221100 0 000 0 001111345679999998653 334445544443334566777765432 1111111
Q ss_pred cceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHH
Q 045150 323 KTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 323 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 375 (841)
....+.+.+++.++....+...+...... --.+..+.|++.++|.|..+..
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 12578899999999999888776432221 1245678899999999986544
No 174
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=8.2e-07 Score=82.83 Aligned_cols=88 Identities=9% Similarity=0.018 Sum_probs=57.7
Q ss_pred CCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCC---CcccccceeccccccCceEEEEc-c
Q 045150 713 PNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAE---GFPLLEILLLDAVEVGIVEWQVE-E 788 (841)
Q Consensus 713 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~---~f~~L~~L~l~~~~~~l~~~~~~-~ 788 (841)
.+|+.|+|++|.+++..+..+.++++|+.|+|++|. ...+..+..-.. ..++|++|+|++|+ ++++-... .
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~----~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~-~ITD~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH----YIEDGCLERLSQLENLQKSMLEMEIISCG-NVTDKGIIAL 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT----TCCHHHHHHHHTCHHHHHHCCEEEEESCT-TCCHHHHHHG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC----ccCHHHHHHHHhcccccCCCCEEEcCCCC-cCCHHHHHHH
Confidence 468888888888777777777888888888887752 111121111111 13578888888887 77754221 2
Q ss_pred CccccccccccccccCCC
Q 045150 789 RAMPMLRGLKIPSDIPNL 806 (841)
Q Consensus 789 ~~~p~L~~L~l~~~c~~L 806 (841)
..+|+|++|+|+ +|+++
T Consensus 136 ~~~~~L~~L~L~-~c~~I 152 (176)
T 3e4g_A 136 HHFRNLKYLFLS-DLPGV 152 (176)
T ss_dssp GGCTTCCEEEEE-SCTTC
T ss_pred hcCCCCCEEECC-CCCCC
Confidence 357888888888 88876
No 175
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.00 E-value=4e-06 Score=89.28 Aligned_cols=61 Identities=28% Similarity=0.312 Sum_probs=30.5
Q ss_pred hhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCcc-ccCccc--CCCCCCCeeecC
Q 045150 502 LAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIR-DFPSSI--FNLPGLQTLDLS 573 (841)
Q Consensus 502 ~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~-~lp~~i--~~L~~L~~L~L~ 573 (841)
+...+..+++|+.|+|++|.. + .++. + .+++|++|+|..| .+. .....+ ..+++|++|+|+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~-----l---~l~~-~-~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNN-----L---SIGK-K-PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBT-----C---BCCS-C-BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCC-----c---eecc-c-cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEe
Confidence 445556666666666666531 2 2222 2 2566666666655 222 111122 256666666654
No 176
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.97 E-value=4.2e-05 Score=80.68 Aligned_cols=177 Identities=19% Similarity=0.141 Sum_probs=101.3
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
++++|.+..++.+..++..+.. ..++.+.|++|+|||++|+.+.+. .. ..++.++.+.. . .+.++.++...
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~--~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~-~~~i~~~~~~~ 96 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKI--PHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-K-IDFVRGPLTNF 96 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCC--CSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-C-HHHHHTHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCC--CeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-C-HHHHHHHHHHH
Confidence 5789999999999999886542 357888899999999999999873 32 12344544331 2 22222222221
Q ss_pred hhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChh---hHHHHHhhCCCCCCCcEEEEEecchH-HhhcCCC
Q 045150 247 NIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV---DWENLRRAFPDNKNGSRVIITTRNRE-VAERSDE 322 (841)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~~~ 322 (841)
.... ...+++-++|+|+++... ..+.+...+.....+.++|+||.... +......
T Consensus 97 ~~~~---------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 97 ASAA---------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp HHBC---------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred Hhhc---------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 1110 012477899999998653 34444444433234567888776543 1111111
Q ss_pred cceeEecCCCChhHHHHHH-------HhHhcCCCCCCchhHHHHHHHHHHcCCCchHHH
Q 045150 323 KTYVHKLRFLRGDESWLLF-------CEKAFRGTNREKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 323 ~~~~~~l~~L~~~~~~~lf-------~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 374 (841)
....+.+++++.++..+++ ...+.......+ ..+....|++.++|.+..+.
T Consensus 156 R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA-DMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS-CHHHHHHHHHHTCSCTTHHH
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHhCCCCHHHHH
Confidence 1257899999988743332 222211111111 02566778888888776443
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.95 E-value=0.00011 Score=74.84 Aligned_cols=178 Identities=10% Similarity=0.045 Sum_probs=94.9
Q ss_pred CCCcccCCChHHHHHHHh---cCCC------CCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 167 ENPVGFEDDTDVLLSKLL---AGDE------PRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~---~~~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
.+++|.+..++.+.+++. .... ...+.+.|+|++|+|||++|+.+++ ..... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEechHHHHhh--
Confidence 468888887777765542 1110 1335678999999999999999998 33322 234443331100
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh-----------------hhHHHHHhhCCC
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK-----------------VDWENLRRAFPD 300 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----------------~~~~~l~~~l~~ 300 (841)
........+...+.......+.+|+||+++.. .....+...+..
T Consensus 79 -------------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 139 (262)
T 2qz4_A 79 -------------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG 139 (262)
T ss_dssp -------------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHT
T ss_pred -------------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhC
Confidence 00001122222333333456789999999753 011223222221
Q ss_pred --CCCCcEEEEEecchHHh-hcC-C--CcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCch
Q 045150 301 --NKNGSRVIITTRNREVA-ERS-D--EKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPL 371 (841)
Q Consensus 301 --~~~gs~ilvTtR~~~v~-~~~-~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 371 (841)
...+..||.||...... ... . .-...+.+...+.++..+++..++...... .........+++.+.|.+-
T Consensus 140 ~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 140 MGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT-QSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp CCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCH
T ss_pred cCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHCCCCCH
Confidence 12345566666544321 111 0 112678899999999999988776432221 1222234677888887754
No 178
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.94 E-value=1.3e-05 Score=84.08 Aligned_cols=154 Identities=17% Similarity=0.138 Sum_probs=85.9
Q ss_pred CCcccCCChHHHHHHHhcC------------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCH
Q 045150 168 NPVGFEDDTDVLLSKLLAG------------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQF 235 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~------------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 235 (841)
+++|.+..++.+.+.+... .......+.|+|.+|+|||++|+.+++.-.........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 4788888777777654311 0113457899999999999999988773111111111123333210
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCC-----------hhhHHHHHhhCCCCCCC
Q 045150 236 QYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWR-----------KVDWENLRRAFPDNKNG 304 (841)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~-----------~~~~~~l~~~l~~~~~g 304 (841)
.+.. .............+... +.-+|++|+++. ......+...+.....+
T Consensus 109 ---------~l~~-------~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 109 ---------DLVG-------QYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp ---------GTCC-------SSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred ---------Hhhh-------hcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 0000 00011112222222222 334999999972 33344555555444456
Q ss_pred cEEEEEecchHH----------hhcCCCcceeEecCCCChhHHHHHHHhHhc
Q 045150 305 SRVIITTRNREV----------AERSDEKTYVHKLRFLRGDESWLLFCEKAF 346 (841)
Q Consensus 305 s~ilvTtR~~~v----------~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 346 (841)
..||.||..... ...+ ...+.+++++.++...++...+.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R~---~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSRI---AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHHE---EEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHhC---CeEEEcCCcCHHHHHHHHHHHHH
Confidence 678888764322 1211 16889999999999999887764
No 179
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.94 E-value=7.8e-05 Score=78.75 Aligned_cols=96 Identities=14% Similarity=0.080 Sum_probs=64.4
Q ss_pred CceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchH-HhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCC
Q 045150 275 GKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNRE-VAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNR 351 (841)
Q Consensus 275 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 351 (841)
+++-++|+|+++.. ...+.+...+.....++.+|++|.... +..........+.+.++++++..+.+.... ..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~~- 182 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---TM- 182 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---CC-
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---CC-
Confidence 56789999999754 445666666655555677777666542 222222223689999999999999888775 11
Q ss_pred CchhHHHHHHHHHHcCCCchHHHHHh
Q 045150 352 EKGLEKLGREMVEKCDGLPLAIVVLG 377 (841)
Q Consensus 352 ~~~~~~~~~~i~~~c~glPlai~~~~ 377 (841)
..+....+++.++|.|..+..+.
T Consensus 183 ---~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 183 ---SQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp ---CHHHHHHHHHHTTTCHHHHHHTT
T ss_pred ---CHHHHHHHHHHcCCCHHHHHHHh
Confidence 12445778899999998765443
No 180
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.90 E-value=3.8e-05 Score=84.10 Aligned_cols=174 Identities=17% Similarity=0.136 Sum_probs=98.1
Q ss_pred CCCcccCCCh---HHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCc-cCHHHHHHHH
Q 045150 167 ENPVGFEDDT---DVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQD-YQFQYLLLRI 242 (841)
Q Consensus 167 ~~~vGr~~~~---~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i 242 (841)
.++||.+..+ ..+...+..+. ...+.|+|.+|+||||+|+.+.+ .....| +.++.. ....+ ++.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~---~~~vLL~GppGtGKTtlAr~ia~--~~~~~f-----~~l~a~~~~~~~-ir~~ 94 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH---LHSMILWGPPGTGKTTLAEVIAR--YANADV-----ERISAVTSGVKE-IREA 94 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC---CCEEEEECSTTSSHHHHHHHHHH--HTTCEE-----EEEETTTCCHHH-HHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC---CcEEEEECCCCCcHHHHHHHHHH--HhCCCe-----EEEEeccCCHHH-HHHH
Confidence 4688987776 66767676553 35789999999999999999998 333222 222221 11211 1111
Q ss_pred HHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChh--hHHHHHhhCCCCCCCcEEEE-EecchH--Hh
Q 045150 243 IKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV--DWENLRRAFPDNKNGSRVII-TTRNRE--VA 317 (841)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilv-TtR~~~--v~ 317 (841)
+.... .....+++.+|++|+++... ..+.+...+.. + ...+|. ||.+.. +.
T Consensus 95 ~~~a~----------------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~ 150 (447)
T 3pvs_A 95 IERAR----------------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELN 150 (447)
T ss_dssp HHHHH----------------------HHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSC
T ss_pred HHHHH----------------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccC
Confidence 11110 01114678899999997642 23333333332 1 233443 444432 11
Q ss_pred hcCCCcceeEecCCCChhHHHHHHHhHhcCCC-----CCCchhHHHHHHHHHHcCCCchHHHH
Q 045150 318 ERSDEKTYVHKLRFLRGDESWLLFCEKAFRGT-----NREKGLEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 318 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-----~~~~~~~~~~~~i~~~c~glPlai~~ 375 (841)
........++.+.+++.++...++.+.+-... ....--.+....+++.++|.+..+..
T Consensus 151 ~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 151 SALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp HHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred HHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 11111226888999999999999888764311 11112345567788888888875544
No 181
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.89 E-value=9.9e-05 Score=79.34 Aligned_cols=198 Identities=13% Similarity=0.105 Sum_probs=106.3
Q ss_pred CCCcccCCChHH---HHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe----CCccCHHHHH
Q 045150 167 ENPVGFEDDTDV---LLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV----SQDYQFQYLL 239 (841)
Q Consensus 167 ~~~vGr~~~~~~---l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~~~~~~~~ 239 (841)
++++|++..++. +...+..+.. ..+.+.|+|++|+|||++|+.+.+. ...... .+.+.. +........+
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~-~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKI-AGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCC-TTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCC-CCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccchhHHH
Confidence 468999988766 4444444432 2357899999999999999999983 332221 122221 2233444444
Q ss_pred HHHHHHhhhccc-----------------cccCC---CC----CCCHHHHHHHHHHHc-----cCc----eEEEEEecCC
Q 045150 240 LRIIKSFNIISS-----------------AEEGG---LE----NKSEEDLERCLYKSL-----QGK----TYLMVLDDVW 286 (841)
Q Consensus 240 ~~i~~~l~~~~~-----------------~~~~~---~~----~~~~~~~~~~l~~~L-----~~k----r~LlVlDdv~ 286 (841)
.+.......... ..+.+ .. ......+...+.+.. .++ +.+|++|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 444443211000 00000 00 000122333332221 233 3499999997
Q ss_pred Ch--hhHHHHHhhCCCCCCCcEEEEEecc-----------------hHHhhcCCCcceeEecCCCChhHHHHHHHhHhcC
Q 045150 287 RK--VDWENLRRAFPDNKNGSRVIITTRN-----------------REVAERSDEKTYVHKLRFLRGDESWLLFCEKAFR 347 (841)
Q Consensus 287 ~~--~~~~~l~~~l~~~~~gs~ilvTtR~-----------------~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 347 (841)
.. +....+...+...... .++++|.. ..+.+. ...+.+.+++.++..+++...+-.
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR----~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR----LLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT----EEEEEECCCCHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh----ccEEEecCCCHHHHHHHHHHHHHH
Confidence 54 4455566666544333 34444431 122222 145899999999999999877643
Q ss_pred CCCCCchhHHHHHHHHHHcC-CCchHHHH
Q 045150 348 GTNREKGLEKLGREMVEKCD-GLPLAIVV 375 (841)
Q Consensus 348 ~~~~~~~~~~~~~~i~~~c~-glPlai~~ 375 (841)
.... --.+....|++.+. |.|..+..
T Consensus 275 ~~~~--~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 275 EDVE--MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp TTCC--BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred cCCC--CCHHHHHHHHHHhcCCCHHHHHH
Confidence 2221 22345677888887 77765544
No 182
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=5e-05 Score=81.23 Aligned_cols=194 Identities=13% Similarity=0.112 Sum_probs=100.5
Q ss_pred CCCcccCCChHHHHHHH-hcCCCCCeEEEEEEccCCCcHHHHHHHHhcC---ccccC-CCCc------------------
Q 045150 167 ENPVGFEDDTDVLLSKL-LAGDEPRRLVISIYGMGGLGKTTLAKKLYHS---SDVKN-KFEC------------------ 223 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L-~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~~~-~F~~------------------ 223 (841)
.+++|.+...+.+..++ ..+.. .. +.|+|+.|+||||+|+.+... +.... .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~--~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDL--PH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCC--CC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred HHhcCCHHHHHHHHHHHhhCCCC--Ce-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 35889888888887777 43322 23 899999999999999988762 11000 0110
Q ss_pred --EEEEEeCCcc-CHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhC
Q 045150 224 --CAWVSVSQDY-QFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAF 298 (841)
Q Consensus 224 --~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l 298 (841)
.+.+..+... ......++++.++..... . .... .+. -+.+++-++|+|++... ...+.+...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~-----~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~l 158 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-----V-----DFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTM 158 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC------------------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhcc-----c-----cccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHH
Confidence 1111111100 000012222222211100 0 0000 000 02346679999999763 2334444444
Q ss_pred CCCCCCcEEEEEecchH-HhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchh-HHHHHHHHHHcCCCchHHHHH
Q 045150 299 PDNKNGSRVIITTRNRE-VAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGL-EKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 299 ~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~-~~~~~~i~~~c~glPlai~~~ 376 (841)
.....+..+|++|.... +..........+.+.+++.++..+.+...+...... -- .+....|++.++|.+..+..+
T Consensus 159 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 159 EKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp HHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred HhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHH
Confidence 33334677777776532 211111112689999999999999988766322111 11 355678889999998766544
Q ss_pred h
Q 045150 377 G 377 (841)
Q Consensus 377 ~ 377 (841)
.
T Consensus 237 l 237 (354)
T 1sxj_E 237 L 237 (354)
T ss_dssp H
T ss_pred H
Confidence 3
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.86 E-value=2.9e-05 Score=85.21 Aligned_cols=158 Identities=17% Similarity=0.147 Sum_probs=92.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCC--cEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFE--CCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERC 268 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (841)
...+.|+|.+|+||||||+.+++ .....|. .+++++.. .+..++...+... . ...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----------~----~~~ 186 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----------K----LNE 186 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----------C----HHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----------c----HHH
Confidence 45789999999999999999998 4433332 24555432 2344444443321 0 112
Q ss_pred HHHHccCceEEEEEecCCChh----hHHHHHhhCCC-CCCCcEEEEEecch---------HHhhcCCCcceeEecCCCCh
Q 045150 269 LYKSLQGKTYLMVLDDVWRKV----DWENLRRAFPD-NKNGSRVIITTRNR---------EVAERSDEKTYVHKLRFLRG 334 (841)
Q Consensus 269 l~~~L~~kr~LlVlDdv~~~~----~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~~l~~L~~ 334 (841)
+.+.+..+.-+|++||++... .-+.+...+.. ...|..||+||... .+...+... ..+.+++++.
T Consensus 187 ~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g-~~i~l~~p~~ 265 (440)
T 2z4s_A 187 FREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG-LVAKLEPPDE 265 (440)
T ss_dssp HHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSS-BCCBCCCCCH
T ss_pred HHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCC-eEEEeCCCCH
Confidence 333344366799999996432 22233333211 13467788888752 222222111 5788999999
Q ss_pred hHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHH
Q 045150 335 DESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 335 ~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 374 (841)
++...++...+...... --.++...|++.+.|.+-.+.
T Consensus 266 e~r~~iL~~~~~~~~~~--i~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 266 ETRKSIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHHHHHHHHTCC--CCTTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHH
Confidence 99999998876422111 112345677888888886554
No 184
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.82 E-value=1.9e-05 Score=84.25 Aligned_cols=82 Identities=18% Similarity=0.081 Sum_probs=51.8
Q ss_pred CCCceeeEEEee-cccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccCcceeeecCCCcCccccC
Q 045150 480 SNSLSRSLLFFN-ENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLIHLKYLGIRGTTFIRDFP 558 (841)
Q Consensus 480 ~~~~lr~L~l~~-~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~~L~~L~L~~~~~~~~lp 558 (841)
.+.+|+.|.+.+ +... ...+..|..+++|++|+|++|. +++ ..|..|.+|++|++|+|++| .+..+|
T Consensus 29 ~~~~L~~L~l~~~n~l~----~~~~~~~~~l~~L~~L~l~~N~------l~~-~~~~~~~~l~~L~~L~l~~N-~l~~~~ 96 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQ----HLELRDLRGLGELRNLTIVKSG------LRF-VAPDAFHFTPRLSRLNLSFN-ALESLS 96 (347)
T ss_dssp SCSCCSEEECCSCSSCC----EECGGGSCSCCCCSEEECCSSC------CCE-ECTTGGGSCSCCCEEECCSS-CCSCCC
T ss_pred CCCCeeEEEccCCCCCC----CcChhHhccccCCCEEECCCCc------cce-eCHHHhcCCcCCCEEeCCCC-ccceeC
Confidence 455677777764 5543 2344566777777777777777 663 33445677777777777777 566666
Q ss_pred cccCCCCCCCeeecC
Q 045150 559 SSIFNLPGLQTLDLS 573 (841)
Q Consensus 559 ~~i~~L~~L~~L~L~ 573 (841)
..+.....|++|+|.
T Consensus 97 ~~~~~~~~L~~l~l~ 111 (347)
T 2ifg_A 97 WKTVQGLSLQELVLS 111 (347)
T ss_dssp STTTCSCCCCEEECC
T ss_pred HHHcccCCceEEEee
Confidence 554443347777777
No 185
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.82 E-value=9.8e-05 Score=77.58 Aligned_cols=179 Identities=19% Similarity=0.166 Sum_probs=99.4
Q ss_pred CCCcccCCChHHHHHHHhc---------CCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLA---------GDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~---------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
.+++|.+..++.+.+.+.. ......+-+.++|++|+|||+||+.+++ .....| +.|+.+ +
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EEEchH------H
Confidence 4689999998888887621 1111245789999999999999999998 333222 223221 1
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChh-------------hHHHHHhhCC---CC
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV-------------DWENLRRAFP---DN 301 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-------------~~~~l~~~l~---~~ 301 (841)
+ ...... .....+...+...-..++.+|+||+++... ....+...+. ..
T Consensus 87 l----~~~~~g-----------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 151 (322)
T 3eie_A 87 L----VSKWMG-----------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 151 (322)
T ss_dssp H----HTTTGG-----------GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS
T ss_pred H----hhcccc-----------hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc
Confidence 1 100000 001122222222234567899999997431 1223332222 22
Q ss_pred CCCcEEEEEecchH-----HhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCC-chHHHH
Q 045150 302 KNGSRVIITTRNRE-----VAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGL-PLAIVV 375 (841)
Q Consensus 302 ~~gs~ilvTtR~~~-----v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~ 375 (841)
..+..||.||.... +.+.+. ..+.+...+.++..+++..++....... -......|++.+.|. +-.+..
T Consensus 152 ~~~v~vi~atn~~~~ld~al~~Rf~---~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 152 SQGVLVLGATNIPWQLDSAIRRRFE---RRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp CCCEEEEEEESCGGGSCHHHHHHCC---EEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTCCHHHHHH
T ss_pred CCceEEEEecCChhhCCHHHHcccC---eEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCCCHHHHHH
Confidence 33555666776532 222221 5678888999999999988774432211 123456788888773 444443
Q ss_pred H
Q 045150 376 L 376 (841)
Q Consensus 376 ~ 376 (841)
+
T Consensus 227 l 227 (322)
T 3eie_A 227 V 227 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.81 E-value=0.00037 Score=73.00 Aligned_cols=181 Identities=18% Similarity=0.146 Sum_probs=98.1
Q ss_pred CCCcccCCChHHHHHHHhc---------CCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLA---------GDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~---------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
++++|.++.++.+.+.+.. ......+.|.++|++|+|||+||+.+++. ... ...+.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~--~~~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--ANN--STFFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TTS--CEEEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cCC--CcEEEEEhHHHHh---
Confidence 3578888888887776531 11113367889999999999999999983 311 0122333322110
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh---------hh----HHHHHhhCC---CC
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK---------VD----WENLRRAFP---DN 301 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---------~~----~~~l~~~l~---~~ 301 (841)
.........+...+...-..++.+|+||+++.. .. ...+...+. ..
T Consensus 85 ------------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 146 (322)
T 1xwi_A 85 ------------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 146 (322)
T ss_dssp ------------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC
T ss_pred ------------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc
Confidence 000111222222222233467889999999753 11 112222221 12
Q ss_pred CCCcEEEEEecch-----HHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCC-chHHHH
Q 045150 302 KNGSRVIITTRNR-----EVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGL-PLAIVV 375 (841)
Q Consensus 302 ~~gs~ilvTtR~~-----~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~ 375 (841)
..+..||.||... .+.+.+ ...+.+...+.++..+++..++....... -......|++.+.|. +-.+..
T Consensus 147 ~~~v~vI~atn~~~~ld~al~rRf---~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~ 221 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRRRF---EKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISI 221 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHHTC---CEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEEecCCcccCCHHHHhhc---CeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHH
Confidence 2344555566433 222222 15678888888888888887763322111 124456788888876 333444
Q ss_pred Hh
Q 045150 376 LG 377 (841)
Q Consensus 376 ~~ 377 (841)
++
T Consensus 222 l~ 223 (322)
T 1xwi_A 222 IV 223 (322)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 187
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.80 E-value=0.00024 Score=77.12 Aligned_cols=110 Identities=12% Similarity=0.096 Sum_probs=67.7
Q ss_pred HHHhccCCcceEEeeecCCCccCCCCCcccccCCCCCCCcccceeEeccccCCCCccccccCCCccEEEEEeccCCCCCh
Q 045150 651 ESIAKLKNLQFLSVNLSDGTVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTTLPKDMHVLLPNLECLSLKVVLPEENPM 730 (841)
Q Consensus 651 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~ 730 (841)
..+.++.+|+.+.+..+ ...+ .-..+..|++|+.+.+......++...+.-|.+|+.+.|..+ ++....
T Consensus 259 ~aF~~c~~L~~i~lp~~---------~~~I-~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 327 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS---------VVSI-GTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILD 327 (394)
T ss_dssp TTTTTCSSCCEEECCTT---------CCEE-CTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred ceeeecccccEEecccc---------ccee-cCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehH
Confidence 45667778888877533 1112 223356677888888776666666665555678888888654 333444
Q ss_pred hhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccc
Q 045150 731 PALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVE 778 (841)
Q Consensus 731 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 778 (841)
..|.+|.+|+.+.|..+ + ...+. ....++++|+.+.+.++.
T Consensus 328 ~aF~~C~~L~~i~ip~s-v---~~I~~---~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-V---TKIPE---SAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTTCTTCCEEEECTT-C---CBCCG---GGGTTCTTCCEEEESSCH
T ss_pred hHhhCCCCCCEEEECcc-c---CEEhH---hHhhCCCCCCEEEECCce
Confidence 56778888888888543 2 11111 123456778888887654
No 188
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.79 E-value=4.3e-05 Score=85.90 Aligned_cols=189 Identities=16% Similarity=0.095 Sum_probs=105.0
Q ss_pred CCCcccCCChHHHHHHHhcCC--------------CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCc
Q 045150 167 ENPVGFEDDTDVLLSKLLAGD--------------EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQD 232 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~--------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 232 (841)
.+++|++..++++..++.... .+..+.+.|+|++|+||||+|+.+++. . .+ .++.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCCc
Confidence 468999999999999987510 012468899999999999999999983 3 22 2344455444
Q ss_pred cCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHH--ccCceEEEEEecCCCh-----hhHHHHHhhCCCCCCCc
Q 045150 233 YQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKS--LQGKTYLMVLDDVWRK-----VDWENLRRAFPDNKNGS 305 (841)
Q Consensus 233 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs 305 (841)
.... ++...+....... .+.. ......+. ..+++.+||+|+++.. ..+..+...+... +.
T Consensus 114 ~~~~-~~~~~i~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~ 180 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNM-----SVVG-----YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--ST 180 (516)
T ss_dssp CCHH-HHHHTGGGGTTBC-----CSTT-----TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SS
T ss_pred chHH-HHHHHHHHHhccc-----cHHH-----HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CC
Confidence 3332 2222222111100 0000 00000001 2467889999999653 1233444333321 23
Q ss_pred EEEEEecchH---HhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCch-HHHHH
Q 045150 306 RVIITTRNRE---VAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPL-AIVVL 376 (841)
Q Consensus 306 ~ilvTtR~~~---v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 376 (841)
.||+++.... +.. .......+.+.+++.++..+.+...+....... -.+....|++.++|.+. ++..+
T Consensus 181 ~iIli~~~~~~~~l~~-l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 181 PLILICNERNLPKMRP-FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp CEEEEESCTTSSTTGG-GTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHHHHHHHH
T ss_pred CEEEEEcCCCCccchh-hHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 3555554322 222 122236789999999999998877664322211 12345678888988544 44443
No 189
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.77 E-value=0.0002 Score=76.31 Aligned_cols=181 Identities=12% Similarity=0.035 Sum_probs=99.7
Q ss_pred CCCcccCCChHHHHHHHhc----CC-----CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLA----GD-----EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~----~~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
.+++|.+..++.+.+.+.. .+ ....+.|.|+|.+|+|||+||+.+++. .... .+.++.+.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~~-- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTSK-- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCCS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhcc--
Confidence 4689999999888887642 00 013457889999999999999999973 3221 234443321100
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh-------------hhHHHHHhhCCC----
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK-------------VDWENLRRAFPD---- 300 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-------------~~~~~l~~~l~~---- 300 (841)
............+...-..++.+|+||+++.. .....+...+..
T Consensus 157 -------------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 217 (357)
T 3d8b_A 157 -------------------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS 217 (357)
T ss_dssp -------------------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----
T ss_pred -------------------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc
Confidence 00000011111222222456789999999532 112233322221
Q ss_pred CCCCcEEEEEecchH-----HhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCC-CchHHH
Q 045150 301 NKNGSRVIITTRNRE-----VAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDG-LPLAIV 374 (841)
Q Consensus 301 ~~~gs~ilvTtR~~~-----v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~ 374 (841)
...+..||.||.... +.+.+ ...+.+...+.++..+++...+...... -..+....|++.+.| .+-.+.
T Consensus 218 ~~~~v~vI~atn~~~~l~~~l~~Rf---~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~dl~ 292 (357)
T 3d8b_A 218 SEDRILVVGATNRPQEIDEAARRRL---VKRLYIPLPEASARKQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGADMT 292 (357)
T ss_dssp CCCCEEEEEEESCGGGBCHHHHTTC---CEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCEEEEEecCChhhCCHHHHhhC---ceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHHHH
Confidence 122445565665432 22221 1567888888898888887766332211 113456778888888 455565
Q ss_pred HHhh
Q 045150 375 VLGG 378 (841)
Q Consensus 375 ~~~~ 378 (841)
.++.
T Consensus 293 ~l~~ 296 (357)
T 3d8b_A 293 QLCR 296 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 190
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.76 E-value=0.00024 Score=75.56 Aligned_cols=180 Identities=18% Similarity=0.134 Sum_probs=97.9
Q ss_pred CCCcccCCChHHHHHHHhc---------CCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLA---------GDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~---------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
.+++|.+..++.+.+.+.. ......+-|.|+|++|+|||+||+.+++. .... .+.+..+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeHH------H
Confidence 3589999988888877631 11112345889999999999999999983 3222 2223221 1
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChh-------------hHHHHHhhC---CCC
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV-------------DWENLRRAF---PDN 301 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-------------~~~~l~~~l---~~~ 301 (841)
+. ... .......+...+...-..++.+|+||+++... ....+...+ ...
T Consensus 120 l~--------~~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 120 LV--------SKW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp HH--------SCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC--
T ss_pred Hh--------hhh-------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc
Confidence 11 000 00111222222222334678899999997531 012222222 222
Q ss_pred CCCcEEEEEecch-----HHhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCC-chHHHH
Q 045150 302 KNGSRVIITTRNR-----EVAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGL-PLAIVV 375 (841)
Q Consensus 302 ~~gs~ilvTtR~~-----~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~ 375 (841)
..+..||.||... .+.+.+ ...+.+...+.++..+++..++....... -......|++.+.|. +-.+..
T Consensus 185 ~~~v~vI~atn~~~~ld~al~rRf---~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl~~ 259 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRRRF---ERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDIAV 259 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHHTC---CEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHccc---CEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHHHH
Confidence 3345566666543 233322 15678888899999999887764322111 123456788888874 444444
Q ss_pred Hh
Q 045150 376 LG 377 (841)
Q Consensus 376 ~~ 377 (841)
++
T Consensus 260 l~ 261 (355)
T 2qp9_X 260 VV 261 (355)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 191
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.73 E-value=9.1e-05 Score=78.57 Aligned_cols=171 Identities=21% Similarity=0.189 Sum_probs=100.8
Q ss_pred CCCcccCCChHHHHHHHhcCC--CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGD--EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIK 244 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 244 (841)
.+++|++..++.+..++.... ......+.|+|++|+|||++|+.+.+ .....| +.+..+.....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~~~~~~~~~~--------- 94 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY--EMSANI---KTTAAPMIEKS--------- 94 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EEEEGGGCCSH---------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EEecchhccch---------
Confidence 468999999999888886421 11334689999999999999999987 333222 23332211111
Q ss_pred HhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCC------------------CCC
Q 045150 245 SFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDN------------------KNG 304 (841)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~------------------~~g 304 (841)
......+.+ ..+.-+|+||+++.. .....+...+... .++
T Consensus 95 ------------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 95 ------------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp ------------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred ------------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 111111111 235568889999754 2233333322211 112
Q ss_pred cEEEEEecchH-----HhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHHH
Q 045150 305 SRVIITTRNRE-----VAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVVL 376 (841)
Q Consensus 305 s~ilvTtR~~~-----v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 376 (841)
..+|.||.... +...+ ...+.+.+++.++...++...+-.... .--.+....+++.+.|.|-.+..+
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~---~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRF---GMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTC---SEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhc---CEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 45666665432 22222 267999999999999998877633221 122456677888999999655443
No 192
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.68 E-value=0.0007 Score=72.92 Aligned_cols=85 Identities=7% Similarity=0.088 Sum_probs=45.5
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccch-hhccccCcceeeecCCCcCccccC
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHN-KKLGKLIHLKYLGIRGTTFIRDFP 558 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p-~~i~~L~~L~~L~L~~~~~~~~lp 558 (841)
...+++++.+... .+ ......|.+|.+|+.++|..+ ++ .++ ..|.++ .|..+.+..+ +..++
T Consensus 44 ~~~~i~~v~ip~~-vt----~Ig~~aF~~C~~L~~I~lp~~-------v~--~Ig~~aF~~c-~l~~i~~~~~--l~~I~ 106 (379)
T 4h09_A 44 DRDRISEVRVNSG-IT----SIGEANFNSCYNMTKVTVAST-------VT--SIGDGAFADT-KLQSYTGMER--VKKFG 106 (379)
T ss_dssp GGGGCSEEEECTT-EE----EECTTTTTTCTTCCEEEECTT-------CC--EECTTTTTTC-CCCEEEECTT--CCEEC
T ss_pred cccCCEEEEeCCC-cc----ChHHHHhhCCCCCCEEEeCCc-------ce--EechhhhcCC-CCceEECCce--eeEec
Confidence 3456666666432 11 244566778888888887643 33 222 344454 4555555443 44555
Q ss_pred cccCCCCCCCeeecCCcccccCc
Q 045150 559 SSIFNLPGLQTLDLSRCIVQLPP 581 (841)
Q Consensus 559 ~~i~~L~~L~~L~L~~~~~~lp~ 581 (841)
.......+|+.+.+..++..+..
T Consensus 107 ~~aF~~~~L~~i~lp~~~~~i~~ 129 (379)
T 4h09_A 107 DYVFQGTDLDDFEFPGATTEIGN 129 (379)
T ss_dssp TTTTTTCCCSEEECCTTCCEECT
T ss_pred cceeccCCcccccCCCccccccc
Confidence 44333446777777644444433
No 193
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.65 E-value=0.00023 Score=74.91 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=84.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLY 270 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 270 (841)
...+.|+|++|+||||||+.+++. ....-..+++++. ..+...+...+... .... +.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~-----------~~~~----~~ 93 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG-----------TINE----FR 93 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT-----------CHHH----HH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC-----------cHHH----HH
Confidence 356889999999999999999983 3221122455543 23333444333221 0111 12
Q ss_pred HHccCceEEEEEecCCChh---h-HHHHHhhCCC-CCCCcEEEEEecchH---------HhhcCCCcceeEecCCCChhH
Q 045150 271 KSLQGKTYLMVLDDVWRKV---D-WENLRRAFPD-NKNGSRVIITTRNRE---------VAERSDEKTYVHKLRFLRGDE 336 (841)
Q Consensus 271 ~~L~~kr~LlVlDdv~~~~---~-~~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~~l~~L~~~~ 336 (841)
+.+. +.-+|++||+.... . .+.+...+.. ...|..||+||.... +...+... .++++++ +.++
T Consensus 94 ~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~-~~i~l~~-~~~e 170 (324)
T 1l8q_A 94 NMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG-ILVEIEL-DNKT 170 (324)
T ss_dssp HHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS-EEEECCC-CHHH
T ss_pred HHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc-eEEEeCC-CHHH
Confidence 2222 35699999996542 1 2223322211 123567888876332 11211111 5689999 9999
Q ss_pred HHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchH
Q 045150 337 SWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLA 372 (841)
Q Consensus 337 ~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 372 (841)
...++...+...... --.+....|++.+ |..-.
T Consensus 171 ~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 171 RFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHH
T ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHH
Confidence 999998877432222 1134556677777 66543
No 194
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.65 E-value=0.00071 Score=73.06 Aligned_cols=180 Identities=14% Similarity=0.089 Sum_probs=96.6
Q ss_pred CCCcccCCChHHHHHHHhcC----C-----CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAG----D-----EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~----~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
.+++|.+..++.+...+... . ....+-+.|+|.+|+|||+||+.+++. .... .+.++.+.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTSK-- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhcc--
Confidence 46899999999888877320 0 012357899999999999999999873 2221 233333221110
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh-------------hhHHHHHhhC---CC-
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK-------------VDWENLRRAF---PD- 300 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-------------~~~~~l~~~l---~~- 300 (841)
. .......+...+...-...+.+|+||+++.. .....+...+ ..
T Consensus 188 ~-------------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 188 Y-------------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp -----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred c-------------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence 0 0001111222222222345679999999643 0111222111 11
Q ss_pred CCCCcEEEEEecchH-----HhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCch-HHH
Q 045150 301 NKNGSRVIITTRNRE-----VAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPL-AIV 374 (841)
Q Consensus 301 ~~~gs~ilvTtR~~~-----v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~ 374 (841)
......||.||.... +.+.+ ...+.+...+.++..+++...+-..... -..+....|++.+.|..- ++.
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~---~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~ 323 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRF---IKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLT 323 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTC---CEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCc---ceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHH
Confidence 122345555665422 22221 1468888999999999988776432221 123456788888888654 554
Q ss_pred HHh
Q 045150 375 VLG 377 (841)
Q Consensus 375 ~~~ 377 (841)
.+.
T Consensus 324 ~L~ 326 (389)
T 3vfd_A 324 ALA 326 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 195
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.61 E-value=0.0015 Score=67.54 Aligned_cols=179 Identities=15% Similarity=0.099 Sum_probs=97.1
Q ss_pred CCCcccCCChHHHHHHHhcC---------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAG---------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~---------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
.+++|.+..++.+.+.+... -......+.|+|++|+||||+|+.+++. .... .+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 45899998888888776321 0012357899999999999999999983 3221 23333322110
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHH-HHHHHccCceEEEEEecCCChh-------------hHHHHH---hhCCC
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLER-CLYKSLQGKTYLMVLDDVWRKV-------------DWENLR---RAFPD 300 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~L~~kr~LlVlDdv~~~~-------------~~~~l~---~~l~~ 300 (841)
. .. ........ .+......++.+|++|+++... ....+. ..++.
T Consensus 93 -----------~-------~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 153 (297)
T 3b9p_A 93 -----------K-------YV-GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG 153 (297)
T ss_dssp -----------S-------SC-SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-
T ss_pred -----------c-------cc-chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc
Confidence 0 00 01122222 2222234567899999996431 011121 22332
Q ss_pred C--CCCcEEEEEecchH-----HhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCch-H
Q 045150 301 N--KNGSRVIITTRNRE-----VAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPL-A 372 (841)
Q Consensus 301 ~--~~gs~ilvTtR~~~-----v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-a 372 (841)
. +.+..||.||.... +.+.+. ..+.+...+.++...++...+...... -..+....+++.+.|.+- +
T Consensus 154 ~~~~~~v~vi~~tn~~~~l~~~l~~R~~---~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~ 228 (297)
T 3b9p_A 154 NPDGDRIVVLAATNRPQELDEAALRRFT---KRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSD 228 (297)
T ss_dssp -----CEEEEEEESCGGGBCHHHHHHCC---EEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHH
T ss_pred cCCCCcEEEEeecCChhhCCHHHHhhCC---eEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHH
Confidence 2 12345666666432 223222 567777778888888877665332211 113455778888988875 4
Q ss_pred HHHHh
Q 045150 373 IVVLG 377 (841)
Q Consensus 373 i~~~~ 377 (841)
+..+.
T Consensus 229 l~~l~ 233 (297)
T 3b9p_A 229 LTALA 233 (297)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 196
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.61 E-value=0.00089 Score=72.10 Aligned_cols=253 Identities=11% Similarity=0.025 Sum_probs=124.0
Q ss_pred ccceEeeeeecCCCeeeecc--CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhc
Q 045150 460 SSCRRQAIYSETPSFFWLHH--SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKL 537 (841)
Q Consensus 460 ~~~r~l~i~~~~~~~~~~~~--~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i 537 (841)
.+++.+.+. +....+.... .+.+|+++.+... .. ......|..+ .|..+.+..+ ++ .++...
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~----~Ig~~aF~~c-~l~~i~~~~~-------l~--~I~~~a 109 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VT----SIGDGAFADT-KLQSYTGMER-------VK--KFGDYV 109 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CC----EECTTTTTTC-CCCEEEECTT-------CC--EECTTT
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ce----EechhhhcCC-CCceEECCce-------ee--Eeccce
Confidence 456666666 4444443333 7889999988543 22 2445677777 4555555443 33 333332
Q ss_pred cccCcceeeecCCCcCccccCcccCCCCCCCeeecCCcccccCc-cccccccccceeccc-----------------ccc
Q 045150 538 GKLIHLKYLGIRGTTFIRDFPSSIFNLPGLQTLDLSRCIVQLPP-ETDMMRELRHLIGKL-----------------IGT 599 (841)
Q Consensus 538 ~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~lp~-~~~~L~~L~~L~~~~-----------------~~~ 599 (841)
....+|+.+.+..+ +..+......-.+|+...+..++..+.. .+..+.+|....... ...
T Consensus 110 F~~~~L~~i~lp~~--~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (379)
T 4h09_A 110 FQGTDLDDFEFPGA--TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL 187 (379)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred eccCCcccccCCCc--cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceeccccccee
Confidence 23347888888765 3444433333345666665543433332 233444444432100 000
Q ss_pred cCCccccccccccccccc-chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCCCc
Q 045150 600 LPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQSSN 678 (841)
Q Consensus 600 ~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 678 (841)
..+....++..+.+.... ......+..+.+|+.+.+..+- .......+.++.+|+.+.+..+ ..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~------~~i~~~~f~~~~~L~~i~lp~~---------v~ 252 (379)
T 4h09_A 188 ESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGV------TTLGDGAFYGMKALDEIAIPKN---------VT 252 (379)
T ss_dssp EECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTC------CEECTTTTTTCSSCCEEEECTT---------CC
T ss_pred ccccccccccccccccceeEEeecccccccccceeeeccce------eEEccccccCCccceEEEcCCC---------cc
Confidence 001111222222211111 1122233444555555543221 1111134455666666666432 11
Q ss_pred ccccCCCCCCCcccceeEeccccCCCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEec
Q 045150 679 AFASLQPLSHCQRLVDLRLTGRMTTLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNF 746 (841)
Q Consensus 679 ~~~~l~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~ 746 (841)
.+ .-..+..+.+|+.+.+..+...++...+.-|++|+.+.+.++.+.......|.+|.+|+.+.|..
T Consensus 253 ~I-~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 253 SI-GSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp EE-CTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred Ee-CccccceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 12 11234556677777776655555554444457777777776665544556677777777777743
No 197
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.60 E-value=2.7e-05 Score=74.53 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=38.1
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
..++|++.+++.+.+.+.... ...+.|+|.+|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~---~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT---KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS---SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC---CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999987643 345689999999999999999873
No 198
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.59 E-value=0.001 Score=72.07 Aligned_cols=287 Identities=10% Similarity=0.056 Sum_probs=139.7
Q ss_pred ceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccc-hhhccccCcceeeecCCCcCccccC-cc
Q 045150 483 LSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLH-NKKLGKLIHLKYLGIRGTTFIRDFP-SS 560 (841)
Q Consensus 483 ~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~-p~~i~~L~~L~~L~L~~~~~~~~lp-~~ 560 (841)
.|+++.+-.. .. ..-...|.+|.+|+.+.+..+.- ..++ .+ ...|..+..|+.+.+..+ +..++ ..
T Consensus 65 ~L~sI~iP~s-vt----~Ig~~AF~~C~~L~~i~~~~n~p---~~l~--~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~a 132 (394)
T 4gt6_A 65 VLTSVQIPDT-VT----EIGSNAFYNCTSLKRVTIQDNKP---SCVK--KIGRQAFMFCSELTDIPILDS--VTEIDSEA 132 (394)
T ss_dssp CCCEEEECTT-CC----EECTTTTTTCTTCCEEEEGGGCC---CCCC--EECTTTTTTCTTCCBCGGGTT--CSEECTTT
T ss_pred cCEEEEECCC-ee----EEhHHHhhCCccCceEeecCCCC---Ceee--EechhhchhcccceeeccCCc--cceehhhh
Confidence 4677766543 21 24456778888888888765420 0032 22 245667777877777655 34443 44
Q ss_pred cCCCCCCCeeecCCcccccCc-cccccccccceeccc----ccccCCccccccccccccccc-chhccccccccCCCceE
Q 045150 561 IFNLPGLQTLDLSRCIVQLPP-ETDMMRELRHLIGKL----IGTLPIENLTNLQTLKYVRCK-SWIRVNTAKLVNLRELH 634 (841)
Q Consensus 561 i~~L~~L~~L~L~~~~~~lp~-~~~~L~~L~~L~~~~----~~~~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~ 634 (841)
+..+.+|+.+.+...+..++. .+..+.+|+.+.... .+...+. .++|..+.+...- ......+..+.+|....
T Consensus 133 F~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSVTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTIT 211 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEE
T ss_pred hhhhcccccccccceeeeecccceecccccccccccceeeEecccccc-ccceeEEEECCcccccccchhhhccccceec
Confidence 667788888888754554444 344555555552210 0111122 1334444433222 22223344455555444
Q ss_pred EeccCCCCcCcccccHHHHhccCCcceEEeeec-CC----CccCCCCCcccccCCCCCCCcccceeEeccccCCCCcccc
Q 045150 635 IVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLS-DG----TVVLPQSSNAFASLQPLSHCQRLVDLRLTGRMTTLPKDMH 709 (841)
Q Consensus 635 l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~-~~----~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~p~~~~ 709 (841)
......... . ..+..........+... .. .-..|.....+ .-..+..|.+|+.+.+......+....+
T Consensus 212 ~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i-~~~aF~~c~~L~~i~lp~~~~~I~~~aF 284 (394)
T 4gt6_A 212 SDSESYPAI-D-----NVLYEKSANGDYALIRYPSQREDPAFKIPNGVARI-ETHAFDSCAYLASVKMPDSVVSIGTGAF 284 (394)
T ss_dssp ECCSSSCBS-S-----SCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEE-CTTTTTTCSSCCEEECCTTCCEECTTTT
T ss_pred ccccccccc-c-----ceeecccccccccccccccccccceEEcCCcceEc-ccceeeecccccEEecccccceecCccc
Confidence 432221100 0 00000000000000000 00 00122222222 2234677888998888766555555444
Q ss_pred ccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccCCCCCccccceEEcCCCcccccceeccccccCceEEEE-cc
Q 045150 710 VLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRDSGDPYHEKKLSCRAEGFPLLEILLLDAVEVGIVEWQV-EE 788 (841)
Q Consensus 710 ~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~-~~ 788 (841)
.-+++|+.+.+.. .+.......|.++.+|+.+.|..+ + ...+. ....++.+|+.+.|.. +++.+.. ..
T Consensus 285 ~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v---~~I~~---~aF~~C~~L~~i~ip~---sv~~I~~~aF 353 (394)
T 4gt6_A 285 MNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-I---TQILD---DAFAGCEQLERIAIPS---SVTKIPESAF 353 (394)
T ss_dssp TTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-C---CEECT---TTTTTCTTCCEEEECT---TCCBCCGGGG
T ss_pred ccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-c---cEehH---hHhhCCCCCCEEEECc---ccCEEhHhHh
Confidence 4468899998864 344445567889999999999653 1 11111 1223456777777643 2343321 12
Q ss_pred Cccccccccccc
Q 045150 789 RAMPMLRGLKIP 800 (841)
Q Consensus 789 ~~~p~L~~L~l~ 800 (841)
..+++|+.+++.
T Consensus 354 ~~C~~L~~i~~~ 365 (394)
T 4gt6_A 354 SNCTALNNIEYS 365 (394)
T ss_dssp TTCTTCCEEEES
T ss_pred hCCCCCCEEEEC
Confidence 234556666554
No 199
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.56 E-value=8.6e-05 Score=67.74 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=34.3
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
+++|+...+.++.+.+..-.. ...-|.|+|..|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 578999989888887753221 1124689999999999999999984
No 200
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.53 E-value=0.002 Score=70.71 Aligned_cols=180 Identities=17% Similarity=0.160 Sum_probs=97.3
Q ss_pred CCCcccCCChHHHHHHHhc---------CCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLA---------GDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~---------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
++++|.+..++.+.+.+.. ......+.|.|+|++|+|||+||+.+++. .. ..-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~~----~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN----NSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--CC----SSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--cC----CCCEEEEeHHH----
Confidence 4588998888888877631 00112357889999999999999999983 31 11233333210
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh---------h----hHHHHHhhCCC---C
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK---------V----DWENLRRAFPD---N 301 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---------~----~~~~l~~~l~~---~ 301 (841)
+ ....... ....... .+...-..++.+|+||+++.. . ....+...+.. .
T Consensus 204 l----~~~~~g~--------~~~~~~~---~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 268 (444)
T 2zan_A 204 L----VSKWLGE--------SEKLVKN---LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 268 (444)
T ss_dssp --------------------CCCTHHH---HHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC
T ss_pred H----Hhhhcch--------HHHHHHH---HHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC
Confidence 1 1110000 0111122 222222456789999999753 1 12233333332 2
Q ss_pred CCCcEEEEEecchH-----HhhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCC-chHHHH
Q 045150 302 KNGSRVIITTRNRE-----VAERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGL-PLAIVV 375 (841)
Q Consensus 302 ~~gs~ilvTtR~~~-----v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~ 375 (841)
..+..||.||.... +.+.+ ...+.+...+.++...+|..++....... -......|++.+.|. +-.+..
T Consensus 269 ~~~v~vI~atn~~~~ld~al~rRf---~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~ 343 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRRRF---EKRIYIPLPEAHARAAMFRLHLGSTQNSL--TEADFQELGRKTDGYSGADISI 343 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHTTC---CEEEECCCCCHHHHHHHHHHHHTTSCEEC--CHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCEEEEecCCCccccCHHHHhhc---ceEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHH
Confidence 34556666765432 22221 15677888888888888887763322111 123456788888884 434443
Q ss_pred H
Q 045150 376 L 376 (841)
Q Consensus 376 ~ 376 (841)
+
T Consensus 344 l 344 (444)
T 2zan_A 344 I 344 (444)
T ss_dssp H
T ss_pred H
Confidence 3
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.53 E-value=0.0012 Score=68.36 Aligned_cols=175 Identities=15% Similarity=0.144 Sum_probs=96.1
Q ss_pred CCCcccCCChHHHHHHHhcC----------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAG----------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQ 236 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 236 (841)
.+++|.+..++++.+.+... .-...+.+.|+|++|.|||+||+.+++. .... ++.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 35889888888887776421 1113457899999999999999999983 3322 23322 12
Q ss_pred HHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChh----------------hHHHHHhhCCC
Q 045150 237 YLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV----------------DWENLRRAFPD 300 (841)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------------~~~~l~~~l~~ 300 (841)
++. ...... ....+...+.......+.+|++|+++... ....+...+..
T Consensus 84 ~l~----~~~~g~-----------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 84 ELL----TMWFGE-----------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp HHH----HHHHTT-----------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred HHH----hhhcCc-----------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 222 222111 01223333444445677999999997421 12233333221
Q ss_pred --CCCCcEEEEEecchHHh-hcC-C--CcceeEecCCCChhHHHHHHHhHhcCCCCC-CchhHHHHHHHHHHcCCCch
Q 045150 301 --NKNGSRVIITTRNREVA-ERS-D--EKTYVHKLRFLRGDESWLLFCEKAFRGTNR-EKGLEKLGREMVEKCDGLPL 371 (841)
Q Consensus 301 --~~~gs~ilvTtR~~~v~-~~~-~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~c~glPl 371 (841)
...+..||.||...... ... . .-...+.+...+.++..+++..++-..... ..++ ..+++.+.|.|-
T Consensus 149 ~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg 222 (301)
T 3cf0_A 149 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSG 222 (301)
T ss_dssp SCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCH
T ss_pred ccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCH
Confidence 22345667677654321 111 1 112678899999998888887766332211 1122 345556666654
No 202
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.53 E-value=5.8e-05 Score=71.85 Aligned_cols=99 Identities=21% Similarity=0.248 Sum_probs=53.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLY 270 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 270 (841)
-..+.|+|+.|+||||||+.+++.......+ .+++++ ..++...+........ . ......
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~---------~--~~~~~~-- 97 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGK---------D--TKFLKT-- 97 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTC---------C--SHHHHH--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCch---------H--HHHHHH--
Confidence 3588999999999999999999832112222 233443 3444444444333211 0 122222
Q ss_pred HHccCceEEEEEecCCC--hhhHH--HHHhhCCC-CCCCcEEEEEec
Q 045150 271 KSLQGKTYLMVLDDVWR--KVDWE--NLRRAFPD-NKNGSRVIITTR 312 (841)
Q Consensus 271 ~~L~~kr~LlVlDdv~~--~~~~~--~l~~~l~~-~~~gs~ilvTtR 312 (841)
+. +.-+|||||++. .+.|. .+...+.. ...|..||+||.
T Consensus 98 --~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn 141 (180)
T 3ec2_A 98 --VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTN 141 (180)
T ss_dssp --HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred --hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 22 445899999973 23333 22222211 124667888885
No 203
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.51 E-value=2.5e-05 Score=74.78 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=45.6
Q ss_pred chhHHhccCceeeEEEeecC-Ccccccccccc---cchhhccccCcceeeecCCCcCcc-----ccCcccCCCCCCCeee
Q 045150 501 DLAPLFKRFLLLRVLEIEES-GYFSRMLFDNR---LHNKKLGKLIHLKYLGIRGTTFIR-----DFPSSIFNLPGLQTLD 571 (841)
Q Consensus 501 ~~~~~~~~~~~Lr~L~L~~~-~~~~~~~l~~~---~~p~~i~~L~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~ 571 (841)
.+...+...+.|+.|+|++| . +.+. .+...+...++|++|+|++| .+. .+...+...++|++|+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~------i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~ 99 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMN------IPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLN 99 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTT------CCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHhcCCCCCEEEecCCCC------CCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEE
Confidence 44567788889999999998 6 5421 24455667788888888888 444 2344455667777777
Q ss_pred cC
Q 045150 572 LS 573 (841)
Q Consensus 572 L~ 573 (841)
|+
T Consensus 100 L~ 101 (185)
T 1io0_A 100 VE 101 (185)
T ss_dssp CC
T ss_pred Cc
Confidence 77
No 204
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.50 E-value=4.6e-06 Score=79.95 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=19.9
Q ss_pred CCccEEEE--EeccCCCCCh----hhhhhcccCCeEEEeccc
Q 045150 713 PNLECLSL--KVVLPEENPM----PALEMLSNLTILDLNFYR 748 (841)
Q Consensus 713 ~~L~~L~L--~~~~l~~~~~----~~l~~l~~L~~L~L~~N~ 748 (841)
++|+.|+| ++|.+..... ..+...++|+.|+|++|.
T Consensus 121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 55666666 5566543322 233445666777766653
No 205
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.42 E-value=0.0013 Score=69.59 Aligned_cols=179 Identities=13% Similarity=0.127 Sum_probs=98.7
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccC-CCC-cEEEEEeCCccCHHHHHHHHHHH
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKN-KFE-CCAWVSVSQDYQFQYLLLRIIKS 245 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~~~~~i~~~ 245 (841)
+++|.+..++.+...+..+.- ..+.++|+.|+||||+|+.+++. +.. .+. .+.-+..+....... .++++..
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~~---~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~~~-ir~~i~~ 99 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGKL---PHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGIDV-VRNQIKD 99 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTCC---CCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSHHH-HHTHHHH
T ss_pred HhcCcHHHHHHHHHHHhcCCC---ceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccHHH-HHHHHHH
Confidence 467877777778777776542 22889999999999999999873 221 111 122222222222211 1112211
Q ss_pred hhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchH-HhhcCCC
Q 045150 246 FNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNRE-VAERSDE 322 (841)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~~~ 322 (841)
+.... ..+.+.+-++|+|+++.. ...+.+...+.......++|++|.... +......
T Consensus 100 ~~~~~--------------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 100 FASTR--------------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp HHHBC--------------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred HHhhc--------------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence 11000 001234678999999643 334444444433334566777665432 1111111
Q ss_pred cceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHH
Q 045150 323 KTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIV 374 (841)
Q Consensus 323 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 374 (841)
....+.+.+++.++..+.+...+-..... --.+..+.|++.++|.+--+.
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 12578899999999888887665222111 113456778888898887443
No 206
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.36 E-value=0.0013 Score=66.34 Aligned_cols=179 Identities=11% Similarity=0.045 Sum_probs=89.4
Q ss_pred CCCcccCCChHHHHHHHh---cCC------CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 167 ENPVGFEDDTDVLLSKLL---AGD------EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~---~~~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
++++|.+..++++.+.+. ... ....+-+.|+|.+|+||||||+.+++. ....| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 357888877766655432 110 011235889999999999999999983 32222 3333221100
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh----------------hhHHHHHhhCCC-
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK----------------VDWENLRRAFPD- 300 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~----------------~~~~~l~~~l~~- 300 (841)
.........+...+.......+.++++|+++.. .....+...+..
T Consensus 84 ------------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (257)
T 1lv7_A 84 ------------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF 145 (257)
T ss_dssp ------------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC
T ss_pred ------------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc
Confidence 000111233333344444556789999998421 111222222211
Q ss_pred -CCCCcEEEEEecchH-HhhcC---CCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCC-CchHHH
Q 045150 301 -NKNGSRVIITTRNRE-VAERS---DEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDG-LPLAIV 374 (841)
Q Consensus 301 -~~~gs~ilvTtR~~~-v~~~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~ 374 (841)
...+..||.||.... +.... +.-...+.+...+.++..+++..+.-.....+.. ....++..+.| .+--+.
T Consensus 146 ~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~---~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 146 EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI---DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCCHHHHH
T ss_pred ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc---cHHHHHHHcCCCCHHHHH
Confidence 223445666665543 21111 1112567788888888777776665221111111 12345666666 554443
No 207
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.31 E-value=9.6e-05 Score=68.83 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=8.5
Q ss_pred cccccceeccccccCceE
Q 045150 766 FPLLEILLLDAVEVGIVE 783 (841)
Q Consensus 766 f~~L~~L~l~~~~~~l~~ 783 (841)
+++|+.|++++|+ .+++
T Consensus 138 ~~~L~~L~L~~c~-~Itd 154 (176)
T 3e4g_A 138 FRNLKYLFLSDLP-GVKE 154 (176)
T ss_dssp CTTCCEEEEESCT-TCCC
T ss_pred CCCCCEEECCCCC-CCCc
Confidence 4555555555555 4443
No 208
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.29 E-value=0.00046 Score=82.62 Aligned_cols=155 Identities=15% Similarity=0.159 Sum_probs=80.9
Q ss_pred CCCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCc---cccCCC-C-cEEEEEeCCccCHHHHHH
Q 045150 166 EENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSS---DVKNKF-E-CCAWVSVSQDYQFQYLLL 240 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~F-~-~~~wv~vs~~~~~~~~~~ 240 (841)
-+.+|||+.++..++..|..... .-+.++|.+|+||||+|+.+++.. .+.... . .+++++++.-..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~---~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------ 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTK---NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------ 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSC---CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred CcccCCcHHHHHHHHHHHhcCCC---CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------
Confidence 35689999999999999876532 346899999999999999998731 111111 1 233443322100
Q ss_pred HHHHHhhhccccccCCCCCCCHHHHHHHHHHHcc-CceEEEEEecCCChh-------hHH---HHHhhCCCCCCCcEEEE
Q 045150 241 RIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQ-GKTYLMVLDDVWRKV-------DWE---NLRRAFPDNKNGSRVII 309 (841)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~-------~~~---~l~~~l~~~~~gs~ilv 309 (841)
+.. ........+...+...-. +++.+|++|+++... .++ .+...+.. .+..+|.
T Consensus 240 ------g~~-------~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~ 304 (854)
T 1qvr_A 240 ------GAK-------YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIG 304 (854)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEE
T ss_pred ------cCc-------cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEE
Confidence 000 000001222222332222 468999999997532 111 23333322 1234555
Q ss_pred EecchHH-----hhcCCCcceeEecCCCChhHHHHHHHhH
Q 045150 310 TTRNREV-----AERSDEKTYVHKLRFLRGDESWLLFCEK 344 (841)
Q Consensus 310 TtR~~~v-----~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 344 (841)
+|..... ..........+.+.+++.++..+++...
T Consensus 305 at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 305 ATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp EECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred ecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 5543322 1112122246889999999998888643
No 209
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.29 E-value=0.00013 Score=70.86 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=28.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV 229 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 229 (841)
..+.|+|.+|+|||+||+.+++ ........++|+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh
Confidence 5788999999999999999998 44444445677764
No 210
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.29 E-value=0.00093 Score=69.02 Aligned_cols=145 Identities=13% Similarity=0.050 Sum_probs=87.6
Q ss_pred CCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCc-cccCCCCcEEEEEeCC-ccCHHHHHHHHHHHhhhcc
Q 045150 173 EDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSS-DVKNKFECCAWVSVSQ-DYQFQYLLLRIIKSFNIIS 250 (841)
Q Consensus 173 ~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 250 (841)
++.++.+...+..+. .....++|+.|.||||+|+.+.+.. .....+....++..+. ...+.+ .+++++.+...+
T Consensus 3 ~~~~~~L~~~i~~~~---~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~p 78 (305)
T 2gno_A 3 KDQLETLKRIIEKSE---GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYSP 78 (305)
T ss_dssp -CHHHHHHHHHHTCS---SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHCCC---CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhcc
Confidence 444556666665543 4688999999999999999998631 1111223345554432 222222 233444332211
Q ss_pred ccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-HHhhcCCCcceeE
Q 045150 251 SAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITTRNR-EVAERSDEKTYVH 327 (841)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~ 327 (841)
..+++-++|+|+++.. ...+.+...+......+.+|++|.+. .+....... .+
T Consensus 79 ----------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~ 134 (305)
T 2gno_A 79 ----------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VF 134 (305)
T ss_dssp ----------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SE
T ss_pred ----------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eE
Confidence 1245778999999753 45666666665555567777766543 333322222 78
Q ss_pred ecCCCChhHHHHHHHhHh
Q 045150 328 KLRFLRGDESWLLFCEKA 345 (841)
Q Consensus 328 ~l~~L~~~~~~~lf~~~~ 345 (841)
+++++++++..+.+.+.+
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999887765
No 211
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.27 E-value=0.00015 Score=65.95 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=32.7
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
+++|.+..++++.+.+..-.. ...-|.|+|..|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhC-CCCcEEEECCCCccHHHHHHHHHHh
Confidence 578988888888887653111 1123779999999999999999984
No 212
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.26 E-value=0.00032 Score=77.63 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=78.4
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCC-----Cc--EEEEEeCCccCHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKF-----EC--CAWVSVSQDYQFQYLL 239 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-----~~--~~wv~vs~~~~~~~~~ 239 (841)
+.+||++.+++.+...|..... .-+.|+|.+|+|||++|+.+++ .+...+ .. ++.+..+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~---~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~~-------- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTK---NNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMGT-------- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS---CEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC------------
T ss_pred CCccCcHHHHHHHHHHHhccCC---CCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCCc--------
Confidence 4699999999999999976432 3457999999999999999987 332211 11 22222220
Q ss_pred HHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchHHhh-
Q 045150 240 LRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNREVAE- 318 (841)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~- 318 (841)
...+ .. . ..+...+...-..++.+|++| ...+....+...+.. ...++|.+|.......
T Consensus 247 -----~~~g-------~~-e---~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 247 -----KYRG-------EF-E---DRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLAR--GELQCIGATTLDEYRKY 306 (468)
T ss_dssp -------------------C---TTHHHHHHHHHTCCCCEEEEC--C--------CCCTTS--SSCEEEEECCTTTTHHH
T ss_pred -----cccc-------hH-H---HHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhcC--CCEEEEecCCHHHHHHH
Confidence 0000 00 0 112222333334567889999 222222233333321 1345665555433111
Q ss_pred --c---CCCcceeEecCCCChhHHHHHHHhHh
Q 045150 319 --R---SDEKTYVHKLRFLRGDESWLLFCEKA 345 (841)
Q Consensus 319 --~---~~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (841)
. .......+.+.+.+.++...++...+
T Consensus 307 ~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 0 00112578999999999999998654
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0025 Score=67.48 Aligned_cols=174 Identities=14% Similarity=0.132 Sum_probs=94.1
Q ss_pred CCCcccCCChHHHHHHHhc---C-------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHH
Q 045150 167 ENPVGFEDDTDVLLSKLLA---G-------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQ 236 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 236 (841)
+++.|.++.+++|.+.+.- . .-...+-|.++|++|.|||.||+++++ .....| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc--
Confidence 3577888888877765431 1 112346789999999999999999998 333333 3344332110
Q ss_pred HHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh----------hh------HHHHHhhCCC
Q 045150 237 YLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK----------VD------WENLRRAFPD 300 (841)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~----------~~------~~~l~~~l~~ 300 (841)
.....+...+.......-...+.+|++|+++.. .+ ...+...+..
T Consensus 221 -------------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 221 -------------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp -------------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred -------------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 000001112222222222467899999999742 01 1122222221
Q ss_pred --CCCCcEEEEEecchHHhh----cCCCcceeEecCCCChhHHHHHHHhHhcCCCCC-CchhHHHHHHHHHHcCCCc
Q 045150 301 --NKNGSRVIITTRNREVAE----RSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNR-EKGLEKLGREMVEKCDGLP 370 (841)
Q Consensus 301 --~~~gs~ilvTtR~~~v~~----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~c~glP 370 (841)
...+-.||.||....... ..+.-...++++.-+.++..++|..+.-..... .-+ ..++++.+.|.-
T Consensus 282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 223445566665433211 111222678898888888888887766332221 122 345667777653
No 214
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.0024 Score=68.83 Aligned_cols=174 Identities=15% Similarity=0.171 Sum_probs=94.7
Q ss_pred CCCcccCCChHHHHHHHhc---C-------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHH
Q 045150 167 ENPVGFEDDTDVLLSKLLA---G-------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQ 236 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 236 (841)
+++.|.++.+++|.+.+.- . .-...+-|.++|++|.|||+||+++++ .....| +.|..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhcc--
Confidence 3567888888877765532 1 112457889999999999999999998 333332 3344332110
Q ss_pred HHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh------------h----hHHHHHhhCC-
Q 045150 237 YLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK------------V----DWENLRRAFP- 299 (841)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~------------~----~~~~l~~~l~- 299 (841)
.....+...+.......-...+.+|++|+++.. . ....+...+.
T Consensus 254 -------------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 254 -------------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp -------------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred -------------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 000001111222222222467899999999742 0 1222333332
Q ss_pred -CCCCCcEEEEEecchHHhhcC----CCcceeEecCCCChhHHHHHHHhHhcCCCCC-CchhHHHHHHHHHHcCCCc
Q 045150 300 -DNKNGSRVIITTRNREVAERS----DEKTYVHKLRFLRGDESWLLFCEKAFRGTNR-EKGLEKLGREMVEKCDGLP 370 (841)
Q Consensus 300 -~~~~gs~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~c~glP 370 (841)
....+..||.||......... +.-...++++.-+.++..++|..+.-..... .-++ ..+++.+.|.-
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 122345677777654432221 1112678888888888888887766433221 2222 45667776653
No 215
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.18 E-value=0.0009 Score=68.00 Aligned_cols=46 Identities=22% Similarity=0.165 Sum_probs=32.9
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.++|....+.++.+.+..-.. ....|.|+|..|+|||++|+.+++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~-~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP-LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT-SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 478988888888776654211 1135779999999999999999984
No 216
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.14 E-value=0.0015 Score=72.14 Aligned_cols=178 Identities=11% Similarity=0.107 Sum_probs=97.4
Q ss_pred CCCcccCCChHHHHHHHhcC-----------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCH
Q 045150 167 ENPVGFEDDTDVLLSKLLAG-----------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQF 235 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 235 (841)
.+++|.+..++++.+++... .. ...-|.|+|.+|.|||++|+.+++ ..... .+.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~-~~~~vLL~GppGtGKT~lAraia~--~~~~~---fv~vn~~~---- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK-PPRGILLYGPPGTGKTLIARAVAN--ETGAF---FFLINGPE---- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC-CCCEEEEECSTTSSHHHHHHHHHH--HCSSE---EEEEEHHH----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCcEEEECcCCCCHHHHHHHHHH--HhCCC---EEEEEchH----
Confidence 35899999999888876531 11 335688999999999999999988 33222 23333211
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh-------------hhHHHHHhhCCC--
Q 045150 236 QYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK-------------VDWENLRRAFPD-- 300 (841)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-------------~~~~~l~~~l~~-- 300 (841)
+...+ ...........+.....+++.+|+||+++.. .....+...+..
T Consensus 274 ------l~~~~-----------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~ 336 (489)
T 3hu3_A 274 ------IMSKL-----------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (489)
T ss_dssp ------HHTSC-----------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred ------hhhhh-----------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc
Confidence 11000 0001122333344444567889999999421 111223322221
Q ss_pred CCCCcEEEEEecchH-HhhcC---CCcceeEecCCCChhHHHHHHHhHhcCCCCC-CchhHHHHHHHHHHcCCC-chHHH
Q 045150 301 NKNGSRVIITTRNRE-VAERS---DEKTYVHKLRFLRGDESWLLFCEKAFRGTNR-EKGLEKLGREMVEKCDGL-PLAIV 374 (841)
Q Consensus 301 ~~~gs~ilvTtR~~~-v~~~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~c~gl-Plai~ 374 (841)
...+.+||.||.... +.... +.-...+.+...+.++..+++..++...... ...+ .++++.+.|. +-.+.
T Consensus 337 ~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLA 412 (489)
T ss_dssp TTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHH
T ss_pred cCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHH
Confidence 222445666665442 21111 1112578899999999999998876432221 1222 4566666664 43344
Q ss_pred H
Q 045150 375 V 375 (841)
Q Consensus 375 ~ 375 (841)
.
T Consensus 413 ~ 413 (489)
T 3hu3_A 413 A 413 (489)
T ss_dssp H
T ss_pred H
Confidence 3
No 217
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.12 E-value=0.0037 Score=73.94 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=85.9
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccC------CCCcEEEE-EeCCccCHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKN------KFECCAWV-SVSQDYQFQYLL 239 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv-~vs~~~~~~~~~ 239 (841)
+.++||+.+++.+.+.|..... .-+.|+|.+|+||||+|+.+.+. +.. .....+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~---~~vlL~G~~GtGKT~la~~la~~--l~~~~v~~~~~~~~~~~~~~~~l------- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRK---NNPLLVGESGVGKTAIAEGLAWR--IVQGDVPEVMADCTIYSLDIGSL------- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSS---CEEEEECCTTSSHHHHHHHHHHH--HHHTCSCGGGTTCEEEECCCC---------
T ss_pred CCccCCHHHHHHHHHHHhccCC---CCeEEEcCCCCCHHHHHHHHHHH--HHhCCCChhhcCCEEEEEcHHHH-------
Confidence 4689999999999999876532 34679999999999999999873 211 12233322 11110
Q ss_pred HHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--------hhH---HHHHhhCCCCCCCcEEE
Q 045150 240 LRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--------VDW---ENLRRAFPDNKNGSRVI 308 (841)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--------~~~---~~l~~~l~~~~~gs~il 308 (841)
+... .....-...+...+...-..++.+|++|+++.. ... ..+...+. ..+.++|
T Consensus 254 ------~~~~------~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I 319 (758)
T 1r6b_X 254 ------LAGT------KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVI 319 (758)
T ss_dssp -------CCC------CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEE
T ss_pred ------hccc------cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEE
Confidence 0000 000011122333333333456789999999754 111 22222222 2245666
Q ss_pred EEecchHHhhcC------CCcceeEecCCCChhHHHHHHHhHh
Q 045150 309 ITTRNREVAERS------DEKTYVHKLRFLRGDESWLLFCEKA 345 (841)
Q Consensus 309 vTtR~~~v~~~~------~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (841)
.+|......... ......+.+...+.++..+++....
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 666554432211 1112568899999999888886543
No 218
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0025 Score=67.79 Aligned_cols=171 Identities=16% Similarity=0.140 Sum_probs=91.3
Q ss_pred CCcccCCChHHHHHHHhc---CC-------CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 168 NPVGFEDDTDVLLSKLLA---GD-------EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~---~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
++.|.++.+++|.+.+.- .. .+..+-|.++|++|.|||.||+++++ .....| +.++.+.-.+
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~l~s--- 254 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSELIQ--- 254 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGGGCC---
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHHhhh---
Confidence 567888888877765531 11 12456799999999999999999998 333332 2333222100
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH-HccCceEEEEEecCCCh--------h--------hHHHHHhhCC-
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK-SLQGKTYLMVLDDVWRK--------V--------DWENLRRAFP- 299 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~--------~--------~~~~l~~~l~- 299 (841)
. ....+ ......+.+ .-...+.+|++|+++.. . ....+...+.
T Consensus 255 -----------k-------~vGes-ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 255 -----------K-------YLGDG-PRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp -----------S-------SSSHH-HHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred -----------c-------cCchH-HHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 0 00001 122222222 22456899999998742 0 1112222221
Q ss_pred -CCCCCcEEEEEecchHHhhc-CC---CcceeEecCCCChhHHHHHHHhHhcCCCCC-CchhHHHHHHHHHHcCCC
Q 045150 300 -DNKNGSRVIITTRNREVAER-SD---EKTYVHKLRFLRGDESWLLFCEKAFRGTNR-EKGLEKLGREMVEKCDGL 369 (841)
Q Consensus 300 -~~~~gs~ilvTtR~~~v~~~-~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~c~gl 369 (841)
....+..||.||........ .- .-...+.+..-+.++..++|..+.-.-... .-++ ..+++.+.|.
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 12234456666655443322 11 112578888888888888887766332221 1222 4566666664
No 219
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0018 Score=69.65 Aligned_cols=172 Identities=14% Similarity=0.167 Sum_probs=92.1
Q ss_pred CCCcccCCChHHHHHHHhc----C------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHH
Q 045150 167 ENPVGFEDDTDVLLSKLLA----G------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQ 236 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~----~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 236 (841)
+++.|.++.+++|.+.+.. . ..+..+-|.++|++|.|||.||+++++ .....| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~~-- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQLVQ-- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCS--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhhhhh--
Confidence 3578888888887765421 1 112457889999999999999999998 333332 3333322110
Q ss_pred HHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH-HccCceEEEEEecCCCh--------h----h----HHHHHhhCC
Q 045150 237 YLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK-SLQGKTYLMVLDDVWRK--------V----D----WENLRRAFP 299 (841)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~--------~----~----~~~l~~~l~ 299 (841)
. ....+ ......+.. .-...+.+|++|+++.. . . ...+...+.
T Consensus 254 ------------~-------~vGes-e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 254 ------------M-------YIGEG-AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp ------------S-------CSSHH-HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred ------------c-------ccchH-HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 0 00000 112222222 22346789999998631 0 1 112333333
Q ss_pred C--CCCCcEEEEEecchHHhhc-C---CCcceeEecCCCChhHHHHHHHhHhcCCCCC-CchhHHHHHHHHHHcCCC
Q 045150 300 D--NKNGSRVIITTRNREVAER-S---DEKTYVHKLRFLRGDESWLLFCEKAFRGTNR-EKGLEKLGREMVEKCDGL 369 (841)
Q Consensus 300 ~--~~~gs~ilvTtR~~~v~~~-~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~c~gl 369 (841)
. ...+-.||.||........ . +.-...++++..+.++..++|..+.-.-... .-+ ..+|++.+.|.
T Consensus 314 g~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 314 GFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp TSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred ccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 2 2234455656655443222 1 1112678888888888888887665332221 112 24566777664
No 220
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.0029 Score=68.02 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=36.2
Q ss_pred CCCcccCCChHHHHHHHhc---C-------CCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 167 ENPVGFEDDTDVLLSKLLA---G-------DEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+++.|.++.+++|.+.+.- . .-...+-|.++|++|.|||+||+++++
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4678888888888776532 1 112456789999999999999999998
No 221
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.06 E-value=0.0028 Score=69.42 Aligned_cols=175 Identities=13% Similarity=0.072 Sum_probs=93.4
Q ss_pred CCCcccCCChHHHHHHHh---cC------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 167 ENPVGFEDDTDVLLSKLL---AG------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~---~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
.+++|.++.++++.+... .. .....+-|.|+|++|.|||+||+.+++. ....| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 358888887777665543 11 0011234789999999999999999983 32222 33443321110
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh----------------hhHHHHHhhCC--
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK----------------VDWENLRRAFP-- 299 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~----------------~~~~~l~~~l~-- 299 (841)
............+.+.....+.+|+||+++.. .....+...+.
T Consensus 89 -------------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~ 149 (476)
T 2ce7_A 89 -------------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF 149 (476)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS
T ss_pred -------------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc
Confidence 00001122333344444567899999999542 11223332221
Q ss_pred CCCCCcEEEEEecchHHhhc-C---CCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 045150 300 DNKNGSRVIITTRNREVAER-S---DEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLP 370 (841)
Q Consensus 300 ~~~~gs~ilvTtR~~~v~~~-~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glP 370 (841)
....+..||.||........ . +.-...+.+...+.++..+++..++-..... ++. . ...+++.+.|..
T Consensus 150 ~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v-~-l~~la~~t~G~s 221 (476)
T 2ce7_A 150 DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDV-N-LEIIAKRTPGFV 221 (476)
T ss_dssp CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTC-C-HHHHHHTCTTCC
T ss_pred CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chh-h-HHHHHHhcCCCc
Confidence 11235567777766543221 1 1112478888888888888887665332211 111 0 234777787876
No 222
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.05 E-value=0.0017 Score=67.65 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=41.6
Q ss_pred CCcccCCChHHHHHHHhcC------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC
Q 045150 168 NPVGFEDDTDVLLSKLLAG------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ 231 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 231 (841)
.++|.+..++.+...+... .......+.++|.+|+|||++|+.+++ .....-...+.+.++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTE 85 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGG
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeeccc
Confidence 4678877777777766542 111235899999999999999999998 3322222345566544
No 223
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.00 E-value=0.0022 Score=66.74 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=35.4
Q ss_pred CCCcccCCChHHHHHHHhcC-----------CCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 167 ENPVGFEDDTDVLLSKLLAG-----------DEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..++|.+..++.+...+... .......+.++|.+|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45889988888888776540 000234678999999999999999998
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.93 E-value=0.00035 Score=71.19 Aligned_cols=46 Identities=24% Similarity=0.266 Sum_probs=35.0
Q ss_pred CCCcccCCChHHHHHHHhc----------CCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 167 ENPVGFEDDTDVLLSKLLA----------GDEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|.+..++.+.+.+.. +.. ..+-+.|+|.+|+|||+||+.+++
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAK-IPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCC-CCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCC-CCceEEEECCCCCcHHHHHHHHHH
Confidence 4689999998888876541 001 122377999999999999999998
No 225
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.89 E-value=0.0047 Score=63.88 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=35.8
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+.++|....+.++.+.+..-.. ....|.|+|..|+|||++|+.+.+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~-~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP-SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS-TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC-CCCcEEEECCCCchHHHHHHHHHH
Confidence 4588999999888887765322 123577999999999999999987
No 226
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.0038 Score=67.04 Aligned_cols=173 Identities=13% Similarity=0.089 Sum_probs=93.0
Q ss_pred CCCcccCCChHHHHHHHhc---C-------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHH
Q 045150 167 ENPVGFEDDTDVLLSKLLA---G-------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQ 236 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 236 (841)
+++.|.++.+++|.+.+.- . .-...+-|.++|++|.|||+||+++++ .....| +.|..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhhc--
Confidence 3577888888887765421 1 112456788999999999999999998 343332 3343322110
Q ss_pred HHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChh----------------hHHHHHhhCCC
Q 045150 237 YLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKV----------------DWENLRRAFPD 300 (841)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------------~~~~l~~~l~~ 300 (841)
. ....+...+.......-...+.+|++|+++... ....+...+..
T Consensus 282 ------------k-------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 342 (467)
T 4b4t_H 282 ------------K-------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG 342 (467)
T ss_dssp ------------C-------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS
T ss_pred ------------c-------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc
Confidence 0 000011122222222234678999999997420 01112222221
Q ss_pred --CCCCcEEEEEecchHHhh----cCCCcceeEecCCCChhHHHHHHHhHhcCCCCC-CchhHHHHHHHHHHcCCC
Q 045150 301 --NKNGSRVIITTRNREVAE----RSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNR-EKGLEKLGREMVEKCDGL 369 (841)
Q Consensus 301 --~~~gs~ilvTtR~~~v~~----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~c~gl 369 (841)
...+..||.||....... ..+.-...+++...+.++..++|..+.-.-... .-+ ...|++.+.|.
T Consensus 343 ~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 343 FDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNS 414 (467)
T ss_dssp SCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSC
T ss_pred cCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCC
Confidence 222344555664332211 111223788898888888888988776432221 112 24567777765
No 227
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.79 E-value=0.0011 Score=66.70 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=55.3
Q ss_pred HHhccCceeeEEEeecCCcccccccccc-cchhhccccCcceeeecCCCcCccccCcccCCCC--CCCeeecC-Ccccc-
Q 045150 504 PLFKRFLLLRVLEIEESGYFSRMLFDNR-LHNKKLGKLIHLKYLGIRGTTFIRDFPSSIFNLP--GLQTLDLS-RCIVQ- 578 (841)
Q Consensus 504 ~~~~~~~~Lr~L~L~~~~~~~~~~l~~~-~~p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~--~L~~L~L~-~~~~~- 578 (841)
....+++.|+.|+|++|. +.+- .+|..+..+++|++|+|++| .+..+ ..+..+. +|++|+|+ |.+..
T Consensus 164 i~~~~l~~L~~L~Ls~N~------l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 164 IIEENIPELLSLNLSNNR------LYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HHHHHCTTCCEEECTTSC------CCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred HHHhhCCCCCEEECCCCC------CCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccc
Confidence 344678899999999998 6621 23456678999999999999 66665 2344444 89999999 55442
Q ss_pred cCc-------ccccccccccee
Q 045150 579 LPP-------ETDMMRELRHLI 593 (841)
Q Consensus 579 lp~-------~~~~L~~L~~L~ 593 (841)
+|. .+..+++|+.|+
T Consensus 236 ~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 236 FRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CSSHHHHHHHHHHHCTTCCEES
T ss_pred cCcchhHHHHHHHHCcccCeEC
Confidence 331 244566666664
No 228
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.77 E-value=0.0088 Score=69.49 Aligned_cols=173 Identities=10% Similarity=0.060 Sum_probs=95.4
Q ss_pred CCcccCCChHHHHHHHh---cCC-------CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHH
Q 045150 168 NPVGFEDDTDVLLSKLL---AGD-------EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQY 237 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~---~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 237 (841)
++.|.++.+++|.+.+. ... ...++-|.++|++|.|||+||+.+++. ...+ .+.|+.+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~~------ 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE------ 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhHH------
Confidence 57789998888877653 111 124567899999999999999999984 3333 23444211
Q ss_pred HHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh---------h----hHHHHHhhCCC--CC
Q 045150 238 LLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK---------V----DWENLRRAFPD--NK 302 (841)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---------~----~~~~l~~~l~~--~~ 302 (841)
+... ........+...+....+..+.+|+||+++.. + ....+...+.. ..
T Consensus 274 --------l~sk-------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 274 --------IMSK-------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp --------HHSS-------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG
T ss_pred --------hhcc-------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc
Confidence 1100 00011233334444444677899999999642 0 11122222211 11
Q ss_pred CCcEEEEEecchH-HhhcCC---CcceeEecCCCChhHHHHHHHhHhcCCCCC-CchhHHHHHHHHHHcCCCc
Q 045150 303 NGSRVIITTRNRE-VAERSD---EKTYVHKLRFLRGDESWLLFCEKAFRGTNR-EKGLEKLGREMVEKCDGLP 370 (841)
Q Consensus 303 ~gs~ilvTtR~~~-v~~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~c~glP 370 (841)
.+-.||.||.... +..... .-...+++...+.++..++|..+.-..... .-+ ..+|++++.|.-
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 2334555554433 322221 122678898888888888888765322211 112 345677777664
No 229
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.77 E-value=0.0013 Score=59.91 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
..+.|+|..|.|||||++.++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999983
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.76 E-value=0.0015 Score=77.10 Aligned_cols=150 Identities=14% Similarity=0.115 Sum_probs=80.0
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCc---cccCCCCcEEEEEeCCccCHHHHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSS---DVKNKFECCAWVSVSQDYQFQYLLLRII 243 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 243 (841)
+.+||++.+++.+...|..... .-+.++|.+|+|||++|+.+.+.- .+.......-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~---~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------ 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTK---NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------ 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS---CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCccCchHHHHHHHHHHhCCCC---CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc------------
Confidence 4699999999999999986432 246799999999999999998731 1111111111222111
Q ss_pred HHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchHHhh-----
Q 045150 244 KSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNREVAE----- 318 (841)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~----- 318 (841)
+....+ . . ...+...+...-..++.+|++| ...+.-..+...+. ....++|.||.......
T Consensus 245 ---g~~~~G---~-~---e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 ---GTKYRG---E-F---EDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred ---cccccc---h-H---HHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 000000 0 0 1122333333344678899999 22222222333332 22345666665443111
Q ss_pred -cCCCcceeEecCCCChhHHHHHHHhHh
Q 045150 319 -RSDEKTYVHKLRFLRGDESWLLFCEKA 345 (841)
Q Consensus 319 -~~~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (841)
........+.+...+.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 000111578999999999999988544
No 231
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.64 E-value=0.015 Score=64.03 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=55.9
Q ss_pred EEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe----------c----ch----HHhhcCCCcceeEecCCCChhHHH
Q 045150 279 LMVLDDVWRK--VDWENLRRAFPDNKNGSRVIITT----------R----NR----EVAERSDEKTYVHKLRFLRGDESW 338 (841)
Q Consensus 279 LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTt----------R----~~----~v~~~~~~~~~~~~l~~L~~~~~~ 338 (841)
++++|+++.. +..+.+...+...... .+|+.| . .. .+.+.+ ..+.+.+++.++..
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~----~~~~~~~~~~~e~~ 372 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV----MIIRTMLYTPQEMK 372 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE----EEEECCCCCHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc----ceeeCCCCCHHHHH
Confidence 8999999753 5677777777654444 344344 2 11 122222 56799999999999
Q ss_pred HHHHhHhcCCCCCCchhHHHHHHHHHHc-CCCchHHHHH
Q 045150 339 LLFCEKAFRGTNREKGLEKLGREMVEKC-DGLPLAIVVL 376 (841)
Q Consensus 339 ~lf~~~~~~~~~~~~~~~~~~~~i~~~c-~glPlai~~~ 376 (841)
+++...+-.... .--.+....|++.+ .|.|..+..+
T Consensus 373 ~iL~~~~~~~~~--~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 373 QIIKIRAQTEGI--NISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHHTC--CBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHHhCC--CCCHHHHHHHHHHccCCCHHHHHHH
Confidence 999876521111 11234556777777 7888765443
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.63 E-value=0.0061 Score=71.95 Aligned_cols=152 Identities=13% Similarity=0.126 Sum_probs=82.4
Q ss_pred CCCcccCCChHHHHHHHhcCC------CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHH
Q 045150 167 ENPVGFEDDTDVLLSKLLAGD------EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLL 240 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 240 (841)
..++|.+..++.+...+.... ......+.++|.+|+|||++|+.+.+ .....-...+-++++.-...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~--~l~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE--SIFGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH--HHHSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH--HhcCCCcceEEEechhcccc-----
Confidence 468999998888888776421 11234789999999999999999998 33222233455554432100
Q ss_pred HHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCC-----------CCCCcEE
Q 045150 241 RIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPD-----------NKNGSRV 307 (841)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~-----------~~~gs~i 307 (841)
.......+...+++ ...-+|+||+++.. +....+...+.. .....+|
T Consensus 564 -----------------~~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~i 623 (758)
T 3pxi_A 564 -----------------HSTSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTIL 623 (758)
T ss_dssp -----------------CCCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEE
T ss_pred -----------------cccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEE
Confidence 00001112222222 23348999999753 333444333321 1134578
Q ss_pred EEEecc-----hH----HhhcCC-----CcceeEecCCCChhHHHHHHHhHh
Q 045150 308 IITTRN-----RE----VAERSD-----EKTYVHKLRFLRGDESWLLFCEKA 345 (841)
Q Consensus 308 lvTtR~-----~~----v~~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~ 345 (841)
|+||.. .. +..... .-..++.+.+++.++..+++...+
T Consensus 624 I~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 624 IMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred EEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 888872 11 111111 111578889998888777765543
No 233
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.60 E-value=0.0052 Score=63.25 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.++.+.++|++|+|||+||+.+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999998
No 234
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.47 E-value=0.013 Score=64.53 Aligned_cols=172 Identities=11% Similarity=-0.007 Sum_probs=89.9
Q ss_pred CCCCcccCCChHHHHHHHh---cCC------CCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHH
Q 045150 166 EENPVGFEDDTDVLLSKLL---AGD------EPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQ 236 (841)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~---~~~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 236 (841)
-.+++|.++.+.++.+... ... ..-.+-+.|+|.+|.||||||+.++.. ... ..+.++.+.-.
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~---~~i~i~g~~~~--- 101 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFV--- 101 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC---CEEEEEGGGGT---
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEehhHHH---
Confidence 3468898877766665432 210 001223899999999999999999983 322 23444432210
Q ss_pred HHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccC----ceEEEEEecCCCh------------hh----HHHHHh
Q 045150 237 YLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQG----KTYLMVLDDVWRK------------VD----WENLRR 296 (841)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----kr~LlVlDdv~~~------------~~----~~~l~~ 296 (841)
..-.......++..++. ...++++|+++.. +. ...+..
T Consensus 102 ----------------------~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~ 159 (499)
T 2dhr_A 102 ----------------------EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 159 (499)
T ss_dssp ----------------------SSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH
T ss_pred ----------------------HhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH
Confidence 00011222334444432 3479999999531 11 223333
Q ss_pred hCCCC--CCCcEEEEEecchHHhhcC-C---CcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 045150 297 AFPDN--KNGSRVIITTRNREVAERS-D---EKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLP 370 (841)
Q Consensus 297 ~l~~~--~~gs~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glP 370 (841)
.+... ..+..|+.||....+.... . .-...+.+...+.++..+++..++-........ ....|++.+.|..
T Consensus 160 ~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 160 EMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 236 (499)
T ss_dssp HGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSCC
T ss_pred HhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCCC
Confidence 33322 2234555566655543211 1 111578888888888888887665322111111 1234566666654
No 235
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.37 E-value=0.015 Score=61.04 Aligned_cols=168 Identities=21% Similarity=0.175 Sum_probs=89.0
Q ss_pred CCcccCCChHHHHHHHhcC---CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHH
Q 045150 168 NPVGFEDDTDVLLSKLLAG---DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIK 244 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 244 (841)
.++|.+..++.+...+... .. ....+.++|+.|+||||||+.+++ .....|. ..+.+-...
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~-~~~~~ll~Gp~G~GKTTLa~~ia~--~l~~~~~---~~sg~~~~~---------- 89 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGE-VLDHVLLAGPPGLGKTTLAHIIAS--ELQTNIH---VTSGPVLVK---------- 89 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTC-CCCCEEEESSTTSSHHHHHHHHHH--HHTCCEE---EEETTTCCS----------
T ss_pred HccCcHHHHHHHHHHHHHHHhcCC-CCCeEEEECCCCCcHHHHHHHHHH--HhCCCEE---EEechHhcC----------
Confidence 4678766666665555432 11 235689999999999999999998 3322211 111100001
Q ss_pred HhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh--hhHHHHHhhCCCC--------C----------CC
Q 045150 245 SFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK--VDWENLRRAFPDN--------K----------NG 304 (841)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~--------~----------~g 304 (841)
..++... ...+. ++-++++|++... ...+.+...+... + ..
T Consensus 90 -----------------~~~l~~~-~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 90 -----------------QGDMAAI-LTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp -----------------HHHHHHH-HHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred -----------------HHHHHHH-HHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 1111111 11222 2346677887542 2223332211110 0 01
Q ss_pred cEEE-EEecchHH----hhcCCCcceeEecCCCChhHHHHHHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHH
Q 045150 305 SRVI-ITTRNREV----AERSDEKTYVHKLRFLRGDESWLLFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 305 s~il-vTtR~~~v----~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 375 (841)
..++ .|++...+ .+.+ .....+++.+.++-.+++.+.+-.... .-..+.+..|++.+.|.|..+..
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~---~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRF---GIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTC---SEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhc---CceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHH
Confidence 1222 34443322 2222 146889999999999999887632221 22245678899999999975543
No 236
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.28 E-value=0.003 Score=64.48 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=44.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe--CCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV--SQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERC 268 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (841)
-+++.|+|++|+||||||.++... .-..++|+++ .+..+ ....+.+.....
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~----------------------~~~~~le~~l~~ 175 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLS----------------------GYNTDFNVFVDD 175 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSST----------------------TCBCCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhh----------------------hhhcCHHHHHHH
Confidence 357789999999999999999873 1123567776 22210 001234555566
Q ss_pred HHHHccCceEEEEEecCCC
Q 045150 269 LYKSLQGKTYLMVLDDVWR 287 (841)
Q Consensus 269 l~~~L~~kr~LlVlDdv~~ 287 (841)
+.+.+...+ +||+|++..
T Consensus 176 i~~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 176 IARAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHHHCS-EEEEECCTT
T ss_pred HHHHHhhCC-EEEEecccc
Confidence 666665555 999999953
No 237
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.26 E-value=0.025 Score=57.35 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=65.3
Q ss_pred EEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHH---HHHHHH
Q 045150 194 ISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEED---LERCLY 270 (841)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~---~~~~l~ 270 (841)
+.|+|++|.||||||+.++.. ... ..+.+..+.-.+ ....+ ....+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~-------------------------~~~~~~~~~i~~vf 96 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLN-------------------------MYVGESERAVRQVF 96 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCS-------------------------STTHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHh-------------------------hhhhHHHHHHHHHH
Confidence 899999999999999999973 222 234444322110 00011 111122
Q ss_pred HH-ccCceEEEEEecCCChh-------------hHHHHHhhCCCC--CCCcEEEEEecchHHhhcC----CCcceeEecC
Q 045150 271 KS-LQGKTYLMVLDDVWRKV-------------DWENLRRAFPDN--KNGSRVIITTRNREVAERS----DEKTYVHKLR 330 (841)
Q Consensus 271 ~~-L~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~----~~~~~~~~l~ 330 (841)
+. -...+.++++|+++... ....+...+..+ ....-++.+|....+.... +.-...+.+.
T Consensus 97 ~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~ 176 (274)
T 2x8a_A 97 QRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVG 176 (274)
T ss_dssp HHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECC
T ss_pred HHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeC
Confidence 21 13456789999986420 112222223221 1233455566555433211 1112677888
Q ss_pred CCChhHHHHHHHhHh
Q 045150 331 FLRGDESWLLFCEKA 345 (841)
Q Consensus 331 ~L~~~~~~~lf~~~~ 345 (841)
..+.++..+++..+.
T Consensus 177 ~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 177 LPPPADRLAILKTIT 191 (274)
T ss_dssp SCCHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHH
Confidence 888888888887765
No 238
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.26 E-value=0.013 Score=57.29 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=51.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhcccc-----ccCCCCCC-CHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSA-----EEGGLENK-SEEDL 265 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~-~~~~~ 265 (841)
.++.|+|.+|+||||||..+.. . .-..++|++....++..++.. +++.++..... ........ ...+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRV 94 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence 4899999999999999999987 1 124688888776556655433 33332211000 00011111 11334
Q ss_pred HHHHHHHccCceEEEEEecCC
Q 045150 266 ERCLYKSLQGKTYLMVLDDVW 286 (841)
Q Consensus 266 ~~~l~~~L~~kr~LlVlDdv~ 286 (841)
...++..+..+.-+||+|.+-
T Consensus 95 ~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 95 IGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHhhcCCCEEEEcCcH
Confidence 455555554457789999874
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.16 E-value=0.021 Score=67.41 Aligned_cols=153 Identities=12% Similarity=0.102 Sum_probs=83.3
Q ss_pred CCCcccCCChHHHHHHHhc---C-------CCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHH
Q 045150 167 ENPVGFEDDTDVLLSKLLA---G-------DEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQ 236 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 236 (841)
++++|.+..++++.+++.. . .-.....|.|+|.+|+||||||+.+... ....| +.+..+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 4589999999999888753 0 0113356899999999999999999883 33222 3333211
Q ss_pred HHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh---------h----hHHHHHhhCCC--C
Q 045150 237 YLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK---------V----DWENLRRAFPD--N 301 (841)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---------~----~~~~l~~~l~~--~ 301 (841)
+... ........+...+.........++++|+++.. + ....+...+.. .
T Consensus 274 ---------l~~~-------~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~ 337 (806)
T 1ypw_A 274 ---------IMSK-------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp ---------HSSS-------STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT
T ss_pred ---------hhhh-------hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc
Confidence 1000 00001122223333333456789999999421 0 11222222221 1
Q ss_pred CCCcEEEEEecchH-HhhcCC---CcceeEecCCCChhHHHHHHHhHh
Q 045150 302 KNGSRVIITTRNRE-VAERSD---EKTYVHKLRFLRGDESWLLFCEKA 345 (841)
Q Consensus 302 ~~gs~ilvTtR~~~-v~~~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 345 (841)
..+..+|.||.... +..... .-...+.+...+.++..+++..++
T Consensus 338 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 22345555655432 222111 111567788888888888887665
No 240
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.10 E-value=0.0042 Score=62.36 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=60.6
Q ss_pred CCCceeeEEEeecccccccccchhHHhccCceeeEEEeecCCcccccccccccchhhccccC--cceeeecCCCcCcccc
Q 045150 480 SNSLSRSLLFFNENVTLFEERDLAPLFKRFLLLRVLEIEESGYFSRMLFDNRLHNKKLGKLI--HLKYLGIRGTTFIRDF 557 (841)
Q Consensus 480 ~~~~lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~~p~~i~~L~--~L~~L~L~~~~~~~~l 557 (841)
.+++|++|.+.+|..... ..++..+..+++|+.|+|++|. +++ + ..+..+. +|++|+|++|.....+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l--~~l~~~~~~l~~L~~L~Ls~N~------i~~--~-~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNE------LKS--E-RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTSCCCCC--GGGTTHHHHSTTCCEEECTTSC------CCS--G-GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCCCCCCC--ccchhHHhhCCCCCEEECCCCc------cCC--c-hhhhhcccCCcceEEccCCcCcccc
Confidence 466888898888876431 1334677899999999999999 773 3 3345555 9999999999544445
Q ss_pred Cc-------ccCCCCCCCeeecC
Q 045150 558 PS-------SIFNLPGLQTLDLS 573 (841)
Q Consensus 558 p~-------~i~~L~~L~~L~L~ 573 (841)
|. .+..+++|+.||-.
T Consensus 237 ~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEESSC
T ss_pred CcchhHHHHHHHHCcccCeECCc
Confidence 52 36789999999854
No 241
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.88 E-value=0.0082 Score=67.49 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=31.4
Q ss_pred CCcccCCChHHHHHHHhc----CCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 168 NPVGFEDDTDVLLSKLLA----GDEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+++|.++..+.+.+.+.- ... ...++.++|++|+||||||+.++.
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356766666655443321 111 235899999999999999999997
No 242
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.80 E-value=0.016 Score=60.67 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=61.2
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccC
Q 045150 176 TDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEG 255 (841)
Q Consensus 176 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 255 (841)
...+-..|..+.-+.-.++.|+|.+|+||||||..+... ....=..++|++....++.. .+++++...... .
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l-~ 117 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSL-L 117 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGC-E
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhh-h
Confidence 344555454122223479999999999999999999873 32222357899877766654 455555432110 0
Q ss_pred CCCCCCHHHHHHHHHHHcc-CceEEEEEecCC
Q 045150 256 GLENKSEEDLERCLYKSLQ-GKTYLMVLDDVW 286 (841)
Q Consensus 256 ~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~ 286 (841)
-....+.++....+...++ .+.-++|+|.+-
T Consensus 118 i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 118 ISQPDHGEQALEIVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp EECCSSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred hhhccCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence 0112334555566665553 455589999874
No 243
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.79 E-value=0.13 Score=51.45 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=19.4
Q ss_pred EEEEccCCCcHHHHHHHHhc
Q 045150 194 ISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~ 213 (841)
+.|+|..|+||||||+.++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999998
No 244
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.73 E-value=0.035 Score=54.68 Aligned_cols=118 Identities=18% Similarity=0.172 Sum_probs=61.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccC----------------
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEG---------------- 255 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~---------------- 255 (841)
.+++|+|.+|+|||||++.+... ....=..++|+.... ....+...+ .+++........
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCce
Confidence 48999999999999999999853 221112466766433 344443333 233322110000
Q ss_pred -CCCCCCHHHHHHHHHHHc---cCceEEEEEecCC-----ChhhHHHHHhhCCC--CCCCcEEEEEecch
Q 045150 256 -GLENKSEEDLERCLYKSL---QGKTYLMVLDDVW-----RKVDWENLRRAFPD--NKNGSRVIITTRNR 314 (841)
Q Consensus 256 -~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~-----~~~~~~~l~~~l~~--~~~gs~ilvTtR~~ 314 (841)
.....+..++...+.+.+ +.+..+||+|..- +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 001124455555555554 2334599999985 22222233222221 12467788888655
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.51 E-value=0.057 Score=56.72 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=45.0
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccC----CCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 045150 176 TDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKN----KFECCAWVSVSQDYQFQYLLLRIIKSFN 247 (841)
Q Consensus 176 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 247 (841)
...+-..|..+ -+.-.++.|+|.+|+||||||..++....... .-..++|++....++..++. .+++.++
T Consensus 108 ~~~LD~~LgGG-l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 108 SQEFDKLLGGG-IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp CHHHHHHTTSS-BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred ChhHHHHhcCC-CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 33444444322 22447999999999999999999886321211 22468999988877776654 3445544
No 246
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.41 E-value=0.03 Score=52.80 Aligned_cols=116 Identities=19% Similarity=0.119 Sum_probs=61.2
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC---ccCHHHHHHHHHHHhhhccccccCCCCCC---------
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ---DYQFQYLLLRIIKSFNIISSAEEGGLENK--------- 260 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l~~~~~~~~~~~~~~--------- 260 (841)
.|-|++-.|.||||.|-...- +..++=-.+.++..-+ ......++.. +.........+....
T Consensus 30 ~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNREADTA 103 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcHHHHH
Confidence 466667777999999988876 3333333455554333 2333444433 321110000011100
Q ss_pred CHHHHHHHHHHHccCceE-EEEEecCCCh-----hhHHHHHhhCCCCCCCcEEEEEecch
Q 045150 261 SEEDLERCLYKSLQGKTY-LMVLDDVWRK-----VDWENLRRAFPDNKNGSRVIITTRNR 314 (841)
Q Consensus 261 ~~~~~~~~l~~~L~~kr~-LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~ilvTtR~~ 314 (841)
........+++.+.+.+| |||||++-.. -..+.+...+.......-||+|+|..
T Consensus 104 ~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 104 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 012233445666665555 9999998321 23344555454444466799999985
No 247
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.39 E-value=0.01 Score=57.16 Aligned_cols=40 Identities=43% Similarity=0.548 Sum_probs=30.2
Q ss_pred CChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 174 DDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 174 ~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+.++.+.+.+.........+|+|+|..|+||||+++.+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455666666653323557999999999999999999886
No 248
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.35 E-value=0.024 Score=59.12 Aligned_cols=94 Identities=14% Similarity=0.213 Sum_probs=54.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccC----CCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCC---CCCCCHH-
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKN----KFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGG---LENKSEE- 263 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~~- 263 (841)
.++.|+|.+|+||||||..++....... .-..++|++....++..++. ++++.++......... ....+.+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~~ 186 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTDH 186 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHHH
Confidence 5899999999999999999886311110 12468999988877777655 3455554321100000 0011112
Q ss_pred --HHHHHHHHHcc--CceEEEEEecCC
Q 045150 264 --DLERCLYKSLQ--GKTYLMVLDDVW 286 (841)
Q Consensus 264 --~~~~~l~~~L~--~kr~LlVlDdv~ 286 (841)
++...+.+.++ .+.-+||+|.+-
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 23344455553 456688888873
No 249
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.35 E-value=0.038 Score=54.81 Aligned_cols=94 Identities=12% Similarity=0.157 Sum_probs=52.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccC----CCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCC---CCCCCHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKN----KFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGG---LENKSEED 264 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~~~ 264 (841)
.++.|+|.+|+||||||..+........ .-..++|++....+...++. .++++++......... ....+..+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 4899999999999999999886211111 23568899877655555443 3444544321000000 00112222
Q ss_pred ---HHHHHHHHcc-CceEEEEEecCC
Q 045150 265 ---LERCLYKSLQ-GKTYLMVLDDVW 286 (841)
Q Consensus 265 ---~~~~l~~~L~-~kr~LlVlDdv~ 286 (841)
....+.+.+. .+.-+||+|.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2233444443 466788899874
No 250
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.34 E-value=0.11 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||.+.++-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 251
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.23 E-value=0.033 Score=58.12 Aligned_cols=95 Identities=12% Similarity=0.150 Sum_probs=55.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCcccc------------CCC--CcEEEEEeCCccCHHHHHHHHHHHhhhccccccCC
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVK------------NKF--ECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGG 256 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 256 (841)
-.++.|+|.+|+||||||..++...... +.. ..++|++....++..++.+ +++.++.........
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 4699999999999999999988631111 111 4689999888877776654 345554322100000
Q ss_pred ---CCCCCHH---HHHHHHHHHcc--CceEEEEEecCC
Q 045150 257 ---LENKSEE---DLERCLYKSLQ--GKTYLMVLDDVW 286 (841)
Q Consensus 257 ---~~~~~~~---~~~~~l~~~L~--~kr~LlVlDdv~ 286 (841)
....+.+ ++...+.+.++ .+.-+||+|.+-
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0011222 23444555553 455688888874
No 252
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.22 E-value=0.024 Score=58.59 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCcccc-CCCCcEEEEEe
Q 045150 177 DVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVK-NKFECCAWVSV 229 (841)
Q Consensus 177 ~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v 229 (841)
+.+.+++..........+.|+|..|+|||+||+.+++. .. ..-..+.++++
T Consensus 138 ~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 138 SAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred HHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 34445555422111357889999999999999999983 33 22234556654
No 253
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.21 E-value=0.059 Score=63.56 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=35.5
Q ss_pred CCCcccCCChHHHHHHHhcC------CCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 167 ENPVGFEDDTDVLLSKLLAG------DEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..++|.+..++.+...+... .......+.++|.+|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 45788888888777766531 111235789999999999999999998
No 254
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.18 E-value=0.038 Score=58.34 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=60.4
Q ss_pred CChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccc
Q 045150 174 DDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAE 253 (841)
Q Consensus 174 ~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 253 (841)
.-...|-..|..+.-+.-.++.|.|.+|+||||||..+... ....-..++|++....++.. .++.++.....-
T Consensus 57 TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l 129 (366)
T 1xp8_A 57 TGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDEL 129 (366)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGC
T ss_pred CCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHc
Confidence 33445545454121112348888999999999999998863 22222468999988776654 244444321110
Q ss_pred cCCCCCCCHHHHHHHHHHHcc-CceEEEEEecCC
Q 045150 254 EGGLENKSEEDLERCLYKSLQ-GKTYLMVLDDVW 286 (841)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~ 286 (841)
. -....+.+++.+.+.+..+ .+--+||+|.+-
T Consensus 130 ~-i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 130 L-VSQPDNGEQALEIMELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp E-EECCSSHHHHHHHHHHHHTTTCCSEEEEECTT
T ss_pred e-eecCCcHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 0 0011234566666666554 344589999883
No 255
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.11 E-value=0.039 Score=56.07 Aligned_cols=86 Identities=13% Similarity=0.163 Sum_probs=53.7
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCC--CCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHH-HHHH
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNK--FECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDL-ERCL 269 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~~l 269 (841)
++-|.|.+|+||||||.++... .... =..++||+....++... +++++.....-- -....+.++. .+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~r-----a~~lGvd~d~ll-v~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPAY-----LRSMGVDPERVI-HTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHHH-----HHHTTCCGGGEE-EEECSBHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHHH-----HHHhCCCHHHeE-EEcCCCHHHHHHHHH
Confidence 7899999999999999988763 3322 24689999888777642 666665432110 0011233444 3333
Q ss_pred HHH--c-cCceEEEEEecCC
Q 045150 270 YKS--L-QGKTYLMVLDDVW 286 (841)
Q Consensus 270 ~~~--L-~~kr~LlVlDdv~ 286 (841)
... + .++.-++|+|.+-
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHHTCCTTCCEEEEEECST
T ss_pred HHHHHhhccCceEEEEeccc
Confidence 332 3 4567899999984
No 256
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.05 E-value=0.27 Score=49.82 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=19.4
Q ss_pred EEEEccCCCcHHHHHHHHhc
Q 045150 194 ISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~ 213 (841)
+.|+|..|+||||||+.++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 89999999999999999998
No 257
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.99 E-value=0.056 Score=64.50 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=36.0
Q ss_pred CCcccCCChHHHHHHHhcC------CCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 168 NPVGFEDDTDVLLSKLLAG------DEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.++|.+..++.+...+... .......+.|+|..|+|||++|+.+.+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5789998888887777532 111235789999999999999999987
No 258
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.99 E-value=0.11 Score=53.64 Aligned_cols=51 Identities=18% Similarity=0.136 Sum_probs=37.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
.++.|.|.+|+||||||..++.+...++ ..++|++.. .+..++...++...
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 5899999999999999999986422222 568888755 46777777776654
No 259
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.97 E-value=0.042 Score=57.75 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=52.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
.++.|+|.+|+||||||.++... ....=..++|++....++.. .++.++.....-. -....+.++....+..
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~-i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLL-VSQPDTGEQALEIADM 133 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCE-EECCSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeE-EecCCCHHHHHHHHHH
Confidence 58999999999999999999863 22222468899987766653 2444543221100 0011234555555555
Q ss_pred Hcc-CceEEEEEecCC
Q 045150 272 SLQ-GKTYLMVLDDVW 286 (841)
Q Consensus 272 ~L~-~kr~LlVlDdv~ 286 (841)
..+ .+.-+||+|.+-
T Consensus 134 l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHTTTCCSEEEEECGG
T ss_pred HHhcCCCCEEEEcChH
Confidence 543 345588999873
No 260
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.96 E-value=0.19 Score=52.72 Aligned_cols=155 Identities=10% Similarity=-0.049 Sum_probs=96.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLY 270 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 270 (841)
..+..++|..|.||++.|+.+.+.. ....|+....+.+....+.. ++.+.+.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~---------------------------~l~~~~~ 69 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTDWN---------------------------AIFSLCQ 69 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCCHH---------------------------HHHHHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCCHH---------------------------HHHHHhc
Confidence 4588999999999999999887721 12245332222332223332 2322222
Q ss_pred H-HccCceEEEEEecCCC---hhhHHHHHhhCCCCCCCcEEEEEecc-------hHHhhcCCCcceeEecCCCChhHHHH
Q 045150 271 K-SLQGKTYLMVLDDVWR---KVDWENLRRAFPDNKNGSRVIITTRN-------REVAERSDEKTYVHKLRFLRGDESWL 339 (841)
Q Consensus 271 ~-~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~ilvTtR~-------~~v~~~~~~~~~~~~l~~L~~~~~~~ 339 (841)
. -+-+++-++|+|+++. .+.++.+...+.....++.+|++|.. ..+..........++..+++.++...
T Consensus 70 ~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 70 AMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp HHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHH
T ss_pred CcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHH
Confidence 1 1245677889999865 35677888777765667777766642 23333333333788999999999888
Q ss_pred HHHhHhcCCCCCCchhHHHHHHHHHHcCCCchHHHH
Q 045150 340 LFCEKAFRGTNREKGLEKLGREMVEKCDGLPLAIVV 375 (841)
Q Consensus 340 lf~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 375 (841)
.+...+-.... .--.+.+..+++.++|.+..+..
T Consensus 150 ~l~~~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 150 WVAARAKQLNL--ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHTTC--EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHHhchHHHHHHH
Confidence 77776632221 12235667788888988877654
No 261
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.77 E-value=0.33 Score=47.46 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||.+.++.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999986
No 262
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.73 E-value=0.22 Score=53.51 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...||.++|.+|+||||++.+++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 263
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.71 E-value=0.048 Score=57.31 Aligned_cols=104 Identities=20% Similarity=0.242 Sum_probs=57.4
Q ss_pred CChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccc
Q 045150 174 DDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAE 253 (841)
Q Consensus 174 ~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 253 (841)
.-...|-..|..+.-+.-.++.|.|.+|+||||||..+... ....=..++|++....++... ++.++.....-
T Consensus 46 TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l 118 (356)
T 1u94_A 46 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNL 118 (356)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGC
T ss_pred CCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhhe
Confidence 33444544443121112358999999999999999998863 222223689999877776432 34444321110
Q ss_pred cCCCCCCCHHHHHHHHHHHc-cCceEEEEEecC
Q 045150 254 EGGLENKSEEDLERCLYKSL-QGKTYLMVLDDV 285 (841)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv 285 (841)
. -....+.+++.+.+.... ..+.-+||+|.+
T Consensus 119 ~-i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 119 L-CSQPDTGEQALEICDALARSGAVDVIVVDSV 150 (356)
T ss_dssp E-EECCSSHHHHHHHHHHHHHHTCCSEEEEECG
T ss_pred e-eeCCCCHHHHHHHHHHHHhccCCCEEEEcCH
Confidence 0 001112344555554443 234458888887
No 264
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.61 E-value=0.21 Score=52.29 Aligned_cols=125 Identities=13% Similarity=0.207 Sum_probs=66.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccc-------cC----CC---------CcEEEEEeCCcc------CH----------
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDV-------KN----KF---------ECCAWVSVSQDY------QF---------- 235 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~-------~~----~F---------~~~~wv~vs~~~------~~---------- 235 (841)
.+++|+|+.|.|||||.+.+.--... .+ .. ..+.+|. |.+ ++
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~--Q~~~l~~~~TV~env~~~~~~ 132 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIF--QHFNLLSSRTVFGNVALPLEL 132 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEEC--SSCCCCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEe--CCCccCCCCCHHHHHHHHHHh
Confidence 48999999999999999999762110 00 00 1133332 221 11
Q ss_pred --------HHHHHHHHHHhhhccccccCCCCCCCHHHH-HHHHHHHccCceEEEEEecCCCh---hhHHHHHhhCCC--C
Q 045150 236 --------QYLLLRIIKSFNIISSAEEGGLENKSEEDL-ERCLYKSLQGKTYLMVLDDVWRK---VDWENLRRAFPD--N 301 (841)
Q Consensus 236 --------~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~--~ 301 (841)
.+...++++.++...... ......+..+. .-.|.+.|-.++=+|++|.--.. ..-..+...+.. .
T Consensus 133 ~~~~~~~~~~~v~~lL~~vgL~~~~~-~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~ 211 (366)
T 3tui_C 133 DNTPKDEVKRRVTELLSLVGLGDKHD-SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211 (366)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCGGGTT-CCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 122344555555432211 11223444433 34567778778889999987432 111222222221 1
Q ss_pred CCCcEEEEEecchHHhhc
Q 045150 302 KNGSRVIITTRNREVAER 319 (841)
Q Consensus 302 ~~gs~ilvTtR~~~v~~~ 319 (841)
..|..||++|.+..++..
T Consensus 212 ~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 212 RLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HSCCEEEEEESCHHHHHH
T ss_pred hCCCEEEEEecCHHHHHH
Confidence 236778999988776654
No 265
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.55 E-value=0.024 Score=54.86 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.-.+|+|+|..|.|||||++.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 266
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.41 E-value=0.22 Score=49.76 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+++|+|..|.|||||.+.++-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999985
No 267
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.37 E-value=0.066 Score=57.20 Aligned_cols=56 Identities=16% Similarity=0.330 Sum_probs=37.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccc----cCCCCcEEEEEeCCccCHHHHHHHHHHHhhh
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDV----KNKFECCAWVSVSQDYQFQYLLLRIIKSFNI 248 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 248 (841)
.++.|+|.+|+|||||+..++-.... ...-..++|++....+...++ +.+++.++.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 48999999999999999976521111 112345889987776665544 335666553
No 268
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.36 E-value=0.02 Score=53.54 Aligned_cols=19 Identities=58% Similarity=0.735 Sum_probs=18.3
Q ss_pred EEEEEccCCCcHHHHHHHH
Q 045150 193 VISIYGMGGLGKTTLAKKL 211 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v 211 (841)
+|.|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 269
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.35 E-value=0.13 Score=52.82 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=47.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHH--HHHHHHHHHhhhccccccCCCCCCCHHHH-H
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQ--YLLLRIIKSFNIISSAEEGGLENKSEEDL-E 266 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~ 266 (841)
...++.|+|.+|+||||++..++. ..+..-..+.++... .+... +-+...++..+..... .....+...+ .
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~--~l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~---~~s~~~~~~v~~ 176 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK--MFVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVIS---HSEGADPAAVAF 176 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEEC---CSTTCCHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH--HHHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEe---cCCccCHHHHHH
Confidence 457999999999999999999987 333222234555432 22221 2233344444432211 0111122222 2
Q ss_pred HHHHHHccCceEEEEEecCC
Q 045150 267 RCLYKSLQGKTYLMVLDDVW 286 (841)
Q Consensus 267 ~~l~~~L~~kr~LlVlDdv~ 286 (841)
..+.+.+..+.=++|+|-.-
T Consensus 177 ~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 177 DAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHHHTTCSEEEEEECC
T ss_pred HHHHHHHhcCCCEEEEECCC
Confidence 34554454444578888764
No 270
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.28 E-value=0.012 Score=61.25 Aligned_cols=51 Identities=14% Similarity=-0.009 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCcccc---CCCCcEEEEEeCCcc
Q 045150 178 VLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVK---NKFECCAWVSVSQDY 233 (841)
Q Consensus 178 ~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~ 233 (841)
++++.+..-.. -..++|+|..|.|||||++.+.+. +. ..+. ++++-+.+..
T Consensus 163 raID~~~pi~r--GQr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGR--GQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBT--TCEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeecC--CcEEEEecCCCCChhHHHHHHHHH--HhhcCCCee-EEEEEecCCh
Confidence 34555554321 247899999999999999998872 22 1233 4456677654
No 271
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.22 E-value=0.025 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|+.|+|||||++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 68999999999999999999873
No 272
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.18 E-value=0.018 Score=56.06 Aligned_cols=111 Identities=16% Similarity=0.071 Sum_probs=60.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYK 271 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (841)
.++.|+|..|.||||++..+.. +...+-..++.+....+. + ....++..++..... .......++.+.+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~----~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPS----VEVESAPEILNYIMS 83 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCC----EEESSTHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccc----cccCCHHHHHHHHHH
Confidence 6889999999999999988887 343333344444432221 1 112333333322111 111223455566665
Q ss_pred HccCceE-EEEEecCCC--hhhHHHHHhhCCCCCCCcEEEEEecch
Q 045150 272 SLQGKTY-LMVLDDVWR--KVDWENLRRAFPDNKNGSRVIITTRNR 314 (841)
Q Consensus 272 ~L~~kr~-LlVlDdv~~--~~~~~~l~~~l~~~~~gs~ilvTtR~~ 314 (841)
.+.+.++ +||+|.+-. .+..+.+.. +.+ .|-.||+|-+..
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 5544445 999999853 233333332 221 267789988743
No 273
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.14 E-value=0.022 Score=53.46 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.05 E-value=0.024 Score=52.85 Aligned_cols=22 Identities=32% Similarity=0.233 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999987
No 275
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.00 E-value=0.028 Score=58.05 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=27.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVS 230 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 230 (841)
..+||+|.|.|||||||.|-.+.. .....=..+.-|.+.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecC
Confidence 568999999999999998887765 222222245566654
No 276
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.93 E-value=0.028 Score=52.85 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 277
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.81 E-value=0.057 Score=55.06 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|+|+|..|+||||||+.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999998876
No 278
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.80 E-value=0.027 Score=52.99 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999986
No 279
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.78 E-value=0.028 Score=53.94 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|+|+.|+||||+|+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 280
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.75 E-value=0.028 Score=58.87 Aligned_cols=42 Identities=29% Similarity=0.293 Sum_probs=35.8
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..++|.++.++.+...+..+. -+.++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~-----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG-----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC-----CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC-----eEEEECCCCCcHHHHHHHHHH
Confidence 468899888888888777653 478999999999999999987
No 281
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.66 E-value=0.035 Score=51.72 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|+|||||++.++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 5899999999999999997553
No 282
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.65 E-value=0.039 Score=52.96 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
-.+|+|+|+.|.||||+|+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999999999987
No 283
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.62 E-value=0.24 Score=51.39 Aligned_cols=52 Identities=21% Similarity=0.195 Sum_probs=37.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFN 247 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 247 (841)
.++.|.|.+|+||||||..++.+... .=..++|++. +.+..++...++....
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 48899999999999999999874222 2235677664 4567777777766543
No 284
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.61 E-value=0.029 Score=52.35 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999987
No 285
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.59 E-value=0.1 Score=54.87 Aligned_cols=56 Identities=18% Similarity=0.359 Sum_probs=35.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCcccc---CCCC-cEEEEEeCCccCHHHHHHHHHHHh
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVK---NKFE-CCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
.-.++.|+|..|+|||||+..++...... +... .++|++....+...++ ..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~ 189 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNR 189 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHc
Confidence 34799999999999999999998631111 1112 3589987665544433 3344433
No 286
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.56 E-value=0.035 Score=55.54 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.44 E-value=0.031 Score=52.79 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+.|.|+|+.|+||||+|+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999987
No 288
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.44 E-value=0.038 Score=60.92 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=35.8
Q ss_pred CCCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 167 ENPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
..++|.++.++.+...+..+. -|.++|.+|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~-----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE-----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC-----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC-----eeEeecCchHHHHHHHHHHHHH
Confidence 457898888888877777653 5789999999999999999983
No 289
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.41 E-value=0.043 Score=51.30 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
-.+|+|+|+.|+||||+|+.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 290
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.41 E-value=0.081 Score=55.59 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=62.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCc-EEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFEC-CAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLY 270 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 270 (841)
.+++|+|+.|.|||||.+.+.. .+...... ++.+.-.-.+.... ..... .+...... .......++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~t~ed~~e~~~~~-------~~~~v-~q~~~~~~---~~~~~~~La 190 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHILTIEDPIEFVHES-------KKCLV-NQREVHRD---TLGFSEALR 190 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCC-------SSSEE-EEEEBTTT---BSCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEEEccCcHHhhhhc-------cccce-eeeeeccc---cCCHHHHHH
Confidence 4899999999999999999876 22221112 22222111110000 00000 00000111 123445788
Q ss_pred HHccCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchHHhh
Q 045150 271 KSLQGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNREVAE 318 (841)
Q Consensus 271 ~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (841)
+.|...+=+|++|.+.+.+.++.+.... ..|..||+||...+.+.
T Consensus 191 ~aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 191 SALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred HHhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 8888888899999998777666655442 23666888887766543
No 291
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.34 E-value=0.044 Score=52.01 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 292
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.33 E-value=0.043 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 293
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.28 E-value=0.041 Score=52.31 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 294
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.25 E-value=0.16 Score=54.85 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=32.3
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccC-HHHHHHHH
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQ-FQYLLLRI 242 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i 242 (841)
.++|+|..|+|||||++.+...... ..-+.++++-+.+... ..+++.++
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l 202 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEM 202 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHh
Confidence 5889999999999999999874221 1224566777776543 23344333
No 295
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.24 E-value=0.14 Score=52.38 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+++|+|.+|+||||++..+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999886
No 296
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.20 E-value=0.043 Score=52.77 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 4899999999999999999986
No 297
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.19 E-value=0.0094 Score=56.51 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=8.8
Q ss_pred hhhhcccCCeEEEec
Q 045150 732 ALEMLSNLTILDLNF 746 (841)
Q Consensus 732 ~l~~l~~L~~L~L~~ 746 (841)
.+..-+.|+.|+++.
T Consensus 152 aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 152 AIEENESLLRVGISF 166 (197)
T ss_dssp HHHHCSSCCEEECCC
T ss_pred HHHhCCCcCeEeccC
Confidence 344556666666654
No 298
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.19 E-value=0.044 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|+|+|+.|+|||||++.+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 299
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.17 E-value=0.034 Score=53.49 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|.|+.|+||||+|+.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 300
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.12 E-value=0.055 Score=52.20 Aligned_cols=24 Identities=46% Similarity=0.661 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|+|+|..|.||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 301
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.03 E-value=0.053 Score=52.46 Aligned_cols=23 Identities=48% Similarity=0.520 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+|+|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 302
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.02 E-value=0.05 Score=51.03 Aligned_cols=22 Identities=50% Similarity=0.625 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045150 193 VISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.++|+|..|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999863
No 303
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.00 E-value=0.42 Score=51.56 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..++|.++|.+|+||||+|..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999886
No 304
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.99 E-value=0.12 Score=55.49 Aligned_cols=106 Identities=20% Similarity=0.206 Sum_probs=58.7
Q ss_pred HHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccC-HHHHHHHHHHHhhhc------c
Q 045150 178 VLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQ-FQYLLLRIIKSFNII------S 250 (841)
Q Consensus 178 ~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~------~ 250 (841)
+.++.|..-.. =.-++|+|..|+|||+|++.+.+. ..+.+-+.++++-+.+... ..++.+++...=... .
T Consensus 142 r~ID~l~pigk--GQr~~Ifgg~G~GKT~L~~~i~~~-~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~r 218 (482)
T 2ck3_D 142 KVVDLLAPYAK--GGKIGLFGGAGVGKTVLIMELINN-VAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSK 218 (482)
T ss_dssp HHHHHHSCEET--TCEEEEEECTTSSHHHHHHHHHHH-TTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCC
T ss_pred EEEeccccccc--CCeeeeecCCCCChHHHHHHHHHh-hHhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCce
Confidence 45555543211 136899999999999999999873 1233446678888887654 345555554431111 0
Q ss_pred ccccCCCCCCC-H-----HHHHHHHHHHc---cCceEEEEEecCC
Q 045150 251 SAEEGGLENKS-E-----EDLERCLYKSL---QGKTYLMVLDDVW 286 (841)
Q Consensus 251 ~~~~~~~~~~~-~-----~~~~~~l~~~L---~~kr~LlVlDdv~ 286 (841)
..--....++. . ....-.+.+++ +++.+||++||+-
T Consensus 219 tvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 219 VALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 00000000111 0 11222345555 4799999999984
No 305
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.98 E-value=0.037 Score=52.42 Aligned_cols=22 Identities=50% Similarity=0.641 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 306
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.97 E-value=0.045 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 307
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.92 E-value=0.049 Score=54.49 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 308
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.89 E-value=0.047 Score=52.46 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999987
No 309
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.89 E-value=0.26 Score=52.83 Aligned_cols=37 Identities=35% Similarity=0.250 Sum_probs=26.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV 229 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 229 (841)
..++.|+|.+|+||||++..++. .....=..+..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~--~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEeec
Confidence 36899999999999999999987 33332223444443
No 310
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.88 E-value=0.1 Score=53.78 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 189 PRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 189 ~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
....+|+|.|..|+||||+|+.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999876
No 311
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.87 E-value=0.24 Score=53.17 Aligned_cols=24 Identities=42% Similarity=0.495 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999986
No 312
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.86 E-value=0.056 Score=51.84 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 313
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.85 E-value=0.081 Score=53.91 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 314
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.84 E-value=0.048 Score=57.95 Aligned_cols=45 Identities=33% Similarity=0.383 Sum_probs=32.3
Q ss_pred CcccCCChHHHHHHHh------------cCCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 169 PVGFEDDTDVLLSKLL------------AGDEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 169 ~vGr~~~~~~l~~~L~------------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
++|.+..++.+...+. .........+.++|++|+|||++|+.+++
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 6777777777666662 00001234688999999999999999998
No 315
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.83 E-value=0.052 Score=52.43 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|+|+|+.|+|||||++.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 316
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.76 E-value=0.029 Score=52.85 Aligned_cols=22 Identities=50% Similarity=0.641 Sum_probs=19.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999876
No 317
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.74 E-value=0.038 Score=51.93 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|+|++|+||||+|+.+..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4788999999999999999986
No 318
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.72 E-value=0.052 Score=50.28 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 319
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.71 E-value=0.056 Score=52.04 Aligned_cols=22 Identities=36% Similarity=0.747 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|+.|+||||+++.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 320
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.71 E-value=0.042 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+|.|+|+.|+||||+++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 321
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.71 E-value=0.21 Score=53.94 Aligned_cols=93 Identities=19% Similarity=0.192 Sum_probs=55.1
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccC-HHHHHHHHHHHhhhc-------cccccCCCCC-----
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQ-FQYLLLRIIKSFNII-------SSAEEGGLEN----- 259 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~~----- 259 (841)
-++|.|..|+|||+|++.+.+. ..+.+-+.++++-+.+... ..++.+++...=... ...--....+
T Consensus 167 r~gIfgg~GvGKT~L~~~l~~~-~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~ 245 (498)
T 1fx0_B 167 KIGLFGGAGVGKTVLIMELINN-IAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGA 245 (498)
T ss_dssp CEEEEECSSSSHHHHHHHHHHH-TTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHH
T ss_pred eEEeecCCCCCchHHHHHHHHH-HHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHH
Confidence 5899999999999999999873 1233457888888887654 345555554321111 0000000000
Q ss_pred -CCHHHHHHHHHHHc---cCceEEEEEecCC
Q 045150 260 -KSEEDLERCLYKSL---QGKTYLMVLDDVW 286 (841)
Q Consensus 260 -~~~~~~~~~l~~~L---~~kr~LlVlDdv~ 286 (841)
.......-.+.+++ +++.+|+++||+-
T Consensus 246 R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 246 RMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp HTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 11122233456666 3689999999994
No 322
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.69 E-value=0.063 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 323
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.67 E-value=0.044 Score=51.21 Aligned_cols=21 Identities=43% Similarity=0.559 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.67 E-value=0.062 Score=51.61 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 325
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.66 E-value=0.057 Score=51.92 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999886
No 326
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.65 E-value=0.012 Score=55.86 Aligned_cols=115 Identities=12% Similarity=0.073 Sum_probs=76.6
Q ss_pred ccccccccccccc-c------chhccccccccCCCceEEeccCCCCcCcccccHHHHhccCCcceEEeeecCCCccCCCC
Q 045150 604 NLTNLQTLKYVRC-K------SWIRVNTAKLVNLRELHIVGGDGQSMGEMEFSFESIAKLKNLQFLSVNLSDGTVVLPQS 676 (841)
Q Consensus 604 ~l~~L~~L~l~~~-~------~~~~~~l~~l~~L~~L~l~~~~~~~~g~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 676 (841)
+-+.|+.|++.++ . ......+..-+.|+.|+|++|.....|...+. ..+..-+.|++|+|++|.+....-..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA-~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI-ELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH-HHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH-HHHhcCCccCeEecCCCcCCHHHHHH
Confidence 3467888888775 3 23455677778999999999987666666666 77878889999999999654321111
Q ss_pred CcccccCCCCCCCcccceeEeccccC-CCC--------ccccccCCCccEEEEEeccC
Q 045150 677 SNAFASLQPLSHCQRLVDLRLTGRMT-TLP--------KDMHVLLPNLECLSLKVVLP 725 (841)
Q Consensus 677 ~~~~~~l~~l~~~~~L~~L~L~~~~~-~~p--------~~~~~l~~~L~~L~L~~~~l 725 (841)
..+.+...+.|+.|+|+++.. .+- ..+.. -+.|+.|+++.+.+
T Consensus 118 -----la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~-N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 -----LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE-NESLLRVGISFASM 169 (197)
T ss_dssp -----HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH-CSSCCEEECCCCCH
T ss_pred -----HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHh-CCCcCeEeccCCCc
Confidence 123355666799999986432 222 12222 27899999987653
No 327
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.64 E-value=0.058 Score=51.30 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 328
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.61 E-value=0.068 Score=48.88 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.++.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 329
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.57 E-value=0.045 Score=52.41 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999975
No 330
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.56 E-value=0.059 Score=52.80 Aligned_cols=22 Identities=45% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 331
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.54 E-value=0.056 Score=51.05 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+|.|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 332
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.53 E-value=0.067 Score=50.53 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+|.|+|++|+||||+|+.+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 333
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.50 E-value=0.081 Score=54.88 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=27.9
Q ss_pred CCChHHHHHHHhcC-CCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 173 EDDTDVLLSKLLAG-DEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 173 ~~~~~~l~~~L~~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+.-.+++++.+... .......|.|+|+.|+||||+++.++.
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 33445555555321 112456789999999999999998887
No 334
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.49 E-value=0.53 Score=46.17 Aligned_cols=107 Identities=17% Similarity=0.202 Sum_probs=53.5
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccc-cCCC-CcEEEEEeCCccCHHHHHHHHHHHhhhccccc
Q 045150 176 TDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDV-KNKF-ECCAWVSVSQDYQFQYLLLRIIKSFNIISSAE 253 (841)
Q Consensus 176 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 253 (841)
.++++..+..+ +.+.|+|..|.||||+.....-+... .+.. ...+.+......-..++.+.+...++......
T Consensus 66 q~~~i~~i~~g-----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 66 ESEILEAISQN-----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp HHHHHHHHHHC-----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred HHHHHHHHhcC-----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 44555555544 37899999999999876655432111 1222 22343333333333344444444333211000
Q ss_pred --------------cCCCCCCCHHHHHHHHHHHccCceEEEEEecCCCh
Q 045150 254 --------------EGGLENKSEEDLERCLYKSLQGKTYLMVLDDVWRK 288 (841)
Q Consensus 254 --------------~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~ 288 (841)
...+.-.+...+...+.+.+.+-+ +||+|.++..
T Consensus 141 ~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~-~lVlDEah~~ 188 (235)
T 3llm_A 141 CGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGIS-HVIVDEIHER 188 (235)
T ss_dssp EEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTCC-EEEECCTTSC
T ss_pred EEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCCc-EEEEECCccC
Confidence 000111234556666665444433 7899999863
No 335
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.45 E-value=0.064 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 336
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.44 E-value=0.43 Score=48.71 Aligned_cols=37 Identities=38% Similarity=0.290 Sum_probs=26.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV 229 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 229 (841)
..+++++|.+|+||||++..++.. ....=..+.++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEec
Confidence 578999999999999999998862 3222223555554
No 337
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.41 E-value=0.065 Score=50.57 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 338
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.40 E-value=0.083 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|.|+|++|+||||+|+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 339
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.40 E-value=0.065 Score=51.69 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999875
No 340
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.39 E-value=0.073 Score=54.87 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 457999999999999999999986
No 341
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.38 E-value=0.058 Score=51.41 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|.|+.|+||||+|+.+.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 342
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.37 E-value=0.064 Score=53.38 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|+|+|+.|+|||||++.+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999994
No 343
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.36 E-value=0.064 Score=49.48 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..++.|+|..|+|||||+..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 344
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.33 E-value=0.074 Score=51.46 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+||.|.|++|+||||.|+.+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999987
No 345
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.23 E-value=0.05 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+|.|.|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 346
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.17 E-value=0.067 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
-++|+|+|+.|+|||||++.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 347
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.16 E-value=0.19 Score=49.16 Aligned_cols=45 Identities=20% Similarity=0.379 Sum_probs=30.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccc---cC-CCCcEEEEEeCCccCH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDV---KN-KFECCAWVSVSQDYQF 235 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~ 235 (841)
-.+++|+|..|+|||||++.++..... .. .-..++|+.....+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 369999999999999999999752111 11 2345788876554443
No 348
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.12 E-value=0.067 Score=51.09 Aligned_cols=22 Identities=41% Similarity=0.445 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|+|.|+.|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 349
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.11 E-value=0.072 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 350
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.10 E-value=0.07 Score=49.35 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 351
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.09 E-value=0.073 Score=50.47 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 352
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.98 E-value=0.13 Score=52.67 Aligned_cols=24 Identities=50% Similarity=0.580 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+++|+|..|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 347999999999999999999986
No 353
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.98 E-value=0.06 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+|.|.|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 354
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.96 E-value=0.072 Score=51.05 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|.|+.|+||||+|+.+..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 355
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.92 E-value=0.078 Score=52.95 Aligned_cols=22 Identities=45% Similarity=0.570 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|+|+|+.|+||||+++.+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999985
No 356
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.92 E-value=0.091 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+|+|.|..|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 357
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.91 E-value=0.38 Score=49.96 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=57.3
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHH
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKS 272 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (841)
+++|+|..|.|||||++.+..- +. .-...+.+.-......... + ..++. ..+ ........+.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i~i~~~~e~~~~~~-~---~~i~~-----~~g----gg~~~r~~la~a 236 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF--IP-KEERIISIEDTEEIVFKHH-K---NYTQL-----FFG----GNITSADCLKSC 236 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG--SC-TTSCEEEEESSCCCCCSSC-S---SEEEE-----ECB----TTBCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEEEECCeeccccccc-h---hEEEE-----EeC----CChhHHHHHHHH
Confidence 7999999999999999999872 22 2244555543222110000 0 00000 000 112334566777
Q ss_pred ccCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchH
Q 045150 273 LQGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNRE 315 (841)
Q Consensus 273 L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 315 (841)
|..++=+|++|.+...+.++.+... ..+ +.-+|+||....
T Consensus 237 L~~~p~ilildE~~~~e~~~~l~~~-~~g--~~tvi~t~H~~~ 276 (330)
T 2pt7_A 237 LRMRPDRIILGELRSSEAYDFYNVL-CSG--HKGTLTTLHAGS 276 (330)
T ss_dssp TTSCCSEEEECCCCSTHHHHHHHHH-HTT--CCCEEEEEECSS
T ss_pred hhhCCCEEEEcCCChHHHHHHHHHH-hcC--CCEEEEEEcccH
Confidence 7777778999999876666555433 221 222677765443
No 358
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.89 E-value=0.076 Score=50.38 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.-.+|+|.|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 359
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.86 E-value=0.076 Score=50.45 Aligned_cols=21 Identities=57% Similarity=0.843 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 360
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.84 E-value=0.069 Score=52.00 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999976
No 361
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.82 E-value=0.057 Score=50.79 Aligned_cols=22 Identities=41% Similarity=0.418 Sum_probs=16.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 362
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.68 E-value=0.14 Score=45.05 Aligned_cols=44 Identities=20% Similarity=0.085 Sum_probs=34.4
Q ss_pred CCCccccccCCCccEEEEEeccCCCCChhhhhhcccCCeEEEecccC
Q 045150 703 TLPKDMHVLLPNLECLSLKVVLPEENPMPALEMLSNLTILDLNFYRD 749 (841)
Q Consensus 703 ~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~N~l 749 (841)
.+|..+ +++|+.|+|++|.++......|..+++|+.|+|++|.+
T Consensus 24 ~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 456443 47789999999988877777788889999999988754
No 363
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.64 E-value=0.49 Score=52.58 Aligned_cols=51 Identities=10% Similarity=0.004 Sum_probs=36.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCC-CCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNK-FECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
.++.|.|.+|+||||||..++.+ .... =..++|++... +..++...++...
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 58899999999999999999874 3222 23577877544 5677777766554
No 364
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.55 E-value=0.081 Score=50.07 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045150 193 VISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
+++|+|..|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998863
No 365
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.51 E-value=0.095 Score=50.93 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|+.|+|||||.+.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 366
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.50 E-value=0.44 Score=49.72 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCcccc-CCCCcEEEEEeCCc
Q 045150 177 DVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVK-NKFECCAWVSVSQD 232 (841)
Q Consensus 177 ~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~ 232 (841)
-++++.|..-.. =.-++|+|..|+|||+|++.+.+..... ..+. ++++-+.+.
T Consensus 163 iraID~l~Pigr--GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGK--GQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBT--TCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred chhhhhcccccC--CceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 356666654321 1367999999999999999988731111 1222 345666654
No 367
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.41 E-value=0.68 Score=50.59 Aligned_cols=71 Identities=21% Similarity=0.166 Sum_probs=43.9
Q ss_pred CcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHH
Q 045150 169 PVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIK 244 (841)
Q Consensus 169 ~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 244 (841)
..|.......+-..+..-. .-.++.|.|.+|+||||||..++.+..... =..++|++... +..++...++.
T Consensus 183 ~~~i~tG~~~LD~~~gGl~--~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 183 ITGIPTGFTELDRMTSGFQ--RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp CCSBCCSCHHHHHHHSSBC--TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCCCCCcHHHHhhcCCCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHHH
Confidence 3444445555555552111 235899999999999999999987422211 13577877543 45666666654
No 368
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.41 E-value=0.11 Score=52.78 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999973
No 369
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.39 E-value=0.061 Score=49.96 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 370
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.39 E-value=0.81 Score=49.77 Aligned_cols=74 Identities=18% Similarity=0.082 Sum_probs=45.5
Q ss_pred CcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 045150 169 PVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFN 247 (841)
Q Consensus 169 ~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 247 (841)
.-|.......+-..+ .+=. .-.++.|.|.+|+||||||..++.+.... .=..++|++.. .+..++...++....
T Consensus 180 ~~~i~tG~~~LD~~l-gGl~-~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 180 VAGVRTGFKELDQLI-GTLG-PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSEA 253 (444)
T ss_dssp ---CCCSCHHHHHHH-CCCC-TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CCcccCCCHhhhhhc-CCcC-CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHHc
Confidence 344445555665555 3211 23588999999999999999998742221 12357787654 456677777765543
No 371
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.37 E-value=0.19 Score=51.86 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|+|+|.+|+||||++..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 372
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.28 E-value=0.18 Score=52.87 Aligned_cols=24 Identities=50% Similarity=0.580 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+++|+|..|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 357999999999999999999986
No 373
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.27 E-value=0.099 Score=53.63 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+++|+|.+|+||||+++.++.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35999999999999999999985
No 374
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.27 E-value=0.16 Score=54.32 Aligned_cols=91 Identities=12% Similarity=0.230 Sum_probs=51.0
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCC----cEEEEEeCCccC-HHHHHHHHHHHhhhccccc-cCCCCCCCH----
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFE----CCAWVSVSQDYQ-FQYLLLRIIKSFNIISSAE-EGGLENKSE---- 262 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~-~~~~~~~~~---- 262 (841)
-++|.|..|+|||+|+.++.+. ...+-+ .++++-+.+... ..++.+++... +...... -....++..
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~--~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~-g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQ--ATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQT-GAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHH--CBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHH-TGGGGEEEEEEETTSCHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHH--HHhccCCCceEEEEEEecCCcHHHHHHHHHHhhc-CCccceEEEEECCCCCHHHHH
Confidence 3689999999999999999984 333223 567777776543 34455544332 1000000 000011111
Q ss_pred --HHHHHHHHHHc---cCceEEEEEecCC
Q 045150 263 --EDLERCLYKSL---QGKTYLMVLDDVW 286 (841)
Q Consensus 263 --~~~~~~l~~~L---~~kr~LlVlDdv~ 286 (841)
....-.+.+++ +++.+|+++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11122356666 3799999999994
No 375
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.27 E-value=0.059 Score=52.22 Aligned_cols=21 Identities=48% Similarity=0.686 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 376
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.24 E-value=0.096 Score=49.87 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.|+|.|..|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 377
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.22 E-value=0.095 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|+|.|+.|+||||+|+.+..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 378
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.21 E-value=0.1 Score=50.91 Aligned_cols=22 Identities=41% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|+|||||.+.+.-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999985
No 379
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.21 E-value=0.094 Score=50.76 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|+|.|+.|+||||+|+.+.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 380
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.21 E-value=0.1 Score=51.32 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|+.|+|||||.+.+.-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3899999999999999999985
No 381
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.20 E-value=0.095 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..|.|.|+.|+||||+|+.+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.19 E-value=0.12 Score=48.45 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|+|.|+.|+||||+++.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 383
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.18 E-value=0.41 Score=51.85 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=49.7
Q ss_pred EEEEEccCCCcHHHHH-HHHhcCccccCCCCc-EEEEEeCCccC-HHHHHHHHHHHhhhccccccCCCCCCC-HHH----
Q 045150 193 VISIYGMGGLGKTTLA-KKLYHSSDVKNKFEC-CAWVSVSQDYQ-FQYLLLRIIKSFNIISSAEEGGLENKS-EED---- 264 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~---- 264 (841)
-++|+|..|+|||+|| ..+.+. . .-+. ++++-+.+... +.++.+++...=......--....+.. ...
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 252 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAP 252 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHH
Confidence 5899999999999995 577773 2 3453 57777777654 344444443311000000000001111 111
Q ss_pred -HHHHHHHHc--cCceEEEEEecCC
Q 045150 265 -LERCLYKSL--QGKTYLMVLDDVW 286 (841)
Q Consensus 265 -~~~~l~~~L--~~kr~LlVlDdv~ 286 (841)
..-.+.+++ +++.+|+++||+-
T Consensus 253 ~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 253 YAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeccHH
Confidence 122345555 6899999999984
No 384
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.13 E-value=0.18 Score=54.73 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+++|+|..|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 357999999999999999999986
No 385
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.07 E-value=0.1 Score=50.88 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.06 E-value=0.12 Score=49.95 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 387
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.06 E-value=0.2 Score=54.25 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=49.0
Q ss_pred EEEEEccCCCcHHHHH-HHHhcCccccCCCCc-EEEEEeCCccC-HHHHHHHHHHHhhhcc-------ccccCCCCCCCH
Q 045150 193 VISIYGMGGLGKTTLA-KKLYHSSDVKNKFEC-CAWVSVSQDYQ-FQYLLLRIIKSFNIIS-------SAEEGGLENKSE 262 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~~-------~~~~~~~~~~~~ 262 (841)
-++|+|..|+|||+|| ..+.+. . .-+. ++++-+.+... ..++.+++...=.... ..++.. .....
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~-~r~~a 239 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQ--Q--GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPAT-LQYLA 239 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTC--C--TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGG-GTTHH
T ss_pred EEEEecCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHH-HHHHH
Confidence 4789999999999995 577773 2 2453 57777777543 2333333322100000 000000 00111
Q ss_pred HHHHHHHHHHc--cCceEEEEEecCCC
Q 045150 263 EDLERCLYKSL--QGKTYLMVLDDVWR 287 (841)
Q Consensus 263 ~~~~~~l~~~L--~~kr~LlVlDdv~~ 287 (841)
....-.+.+++ +++.+|+++||+-.
T Consensus 240 ~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 240 PYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 22233445555 68999999999843
No 388
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.04 E-value=0.1 Score=51.52 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||.+.+.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 389
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.03 E-value=0.1 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|.|.|+.|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 390
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.03 E-value=0.11 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|+.|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4899999999999999998884
No 391
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.00 E-value=0.17 Score=51.07 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|+.|+|||||++.+.-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3899999999999999999975
No 392
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.00 E-value=0.2 Score=51.60 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 447999999999999999999986
No 393
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.93 E-value=1.8 Score=47.40 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=20.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|+|+|.+|+||||++.++..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999985
No 394
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.92 E-value=0.11 Score=50.49 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.1
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 395
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=90.92 E-value=0.093 Score=56.01 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+.++|++|+|||++|+.+++
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999998
No 396
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.91 E-value=0.14 Score=49.77 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 397
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.86 E-value=0.11 Score=49.82 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|+|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 398
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.82 E-value=0.088 Score=51.37 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 399
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.81 E-value=0.26 Score=50.39 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=32.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCC-cEEEEEeCCccCHHHHHHHHHHH
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFE-CCAWVSVSQDYQFQYLLLRIIKS 245 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~ 245 (841)
.+++|+|.+|+|||||++.++.. ....-. .++|+.... +..++.+.++..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCcC--CHHHHHHHHHHH
Confidence 48999999999999999999873 222212 466766433 445555554443
No 400
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.78 E-value=0.13 Score=50.24 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999874
No 401
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.75 E-value=0.2 Score=50.22 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.+.-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3899999999999999999986
No 402
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.69 E-value=0.1 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999987
No 403
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.66 E-value=0.15 Score=48.24 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=25.9
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 176 TDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 176 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+..+..++...+ ....+.|+|++|.||||+|..+++
T Consensus 45 ~~~l~~~~~~iP--kkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKGTP--KKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHTCT--TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--cccEEEEECCCCCCHHHHHHHHHH
Confidence 344555554322 234689999999999999998887
No 404
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.66 E-value=0.13 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 405
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.64 E-value=0.12 Score=50.20 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999976
No 406
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.61 E-value=0.1 Score=50.27 Aligned_cols=21 Identities=33% Similarity=0.268 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+++|+|..|.|||||++.+.-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999975
No 407
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.57 E-value=0.13 Score=51.62 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||.+.+.-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999985
No 408
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.57 E-value=1.1 Score=48.47 Aligned_cols=72 Identities=19% Similarity=0.120 Sum_probs=44.8
Q ss_pred CcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHh
Q 045150 169 PVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSF 246 (841)
Q Consensus 169 ~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 246 (841)
.-|.......+-..+. +=. .-.++.|.|.+|+||||+|..++.+...+ =..++|++.. .+..++...++...
T Consensus 177 ~~gi~TG~~~LD~~lg-Gl~-~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 177 ITGVPSGFTELDRMTY-GYK-RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVTA 248 (444)
T ss_dssp CCSBCCSCHHHHHHHS-SBC-SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHHH
T ss_pred CCCcCCCcHHHHhhcC-CCC-CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHHH
Confidence 3455555566666553 211 23589999999999999999998742222 1356776544 34556666655543
No 409
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.56 E-value=0.13 Score=53.29 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 410
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.48 E-value=0.09 Score=51.67 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=15.9
Q ss_pred EEEEEEccCCCcHHHHHHHHh
Q 045150 192 LVISIYGMGGLGKTTLAKKLY 212 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~ 212 (841)
.+++|+|+.|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999998
No 411
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.42 E-value=0.16 Score=50.99 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 457899999999999999999985
No 412
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.39 E-value=0.14 Score=50.66 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999986
No 413
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.38 E-value=0.13 Score=47.75 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 414
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.36 E-value=0.14 Score=49.99 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|+|.|+.|.||||+|+.+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 415
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.36 E-value=0.13 Score=49.46 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 416
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.35 E-value=0.14 Score=51.33 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.+.-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4899999999999999999986
No 417
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.32 E-value=0.12 Score=49.97 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+++|+|..|.|||||.+.++-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999986
No 418
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.29 E-value=0.24 Score=52.24 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 177 DVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 177 ~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+...+..... ...+|+|+|.+|+|||||+..+..
T Consensus 66 ~~~~~~~~~~~~-~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 66 QQLLLRLLPDSG-NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHGGGCC-CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHhHhhcC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 334444433222 567999999999999999999875
No 419
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.28 E-value=0.15 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||.+.++-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 420
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.27 E-value=0.14 Score=51.18 Aligned_cols=22 Identities=36% Similarity=0.375 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||.+.++-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999976
No 421
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.23 E-value=0.16 Score=52.57 Aligned_cols=24 Identities=42% Similarity=0.547 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+++|+|..|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 422
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.15 E-value=0.15 Score=50.77 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.++-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999987
No 423
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.14 E-value=0.15 Score=50.65 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999976
No 424
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.05 E-value=1.1 Score=52.98 Aligned_cols=123 Identities=18% Similarity=0.205 Sum_probs=62.9
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCC---cEEEEEeCCcc-------CH-----------HHHHHHHHHHhhhccc
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFE---CCAWVSVSQDY-------QF-----------QYLLLRIIKSFNIISS 251 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~~-------~~-----------~~~~~~i~~~l~~~~~ 251 (841)
+++|+|..|.|||||.+.+..- .+. .++ ..-.+.+.+.. +. .+...++++.++....
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~ 540 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDE 540 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChh
Confidence 7999999999999999999841 121 111 00012222221 11 2233455666554210
Q ss_pred cccCCCCCCCHHHH-HHHHHHHccCceEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEecchHHhhc
Q 045150 252 AEEGGLENKSEEDL-ERCLYKSLQGKTYLMVLDDVWRK---VDWENLRRAFPDNKNGSRVIITTRNREVAER 319 (841)
Q Consensus 252 ~~~~~~~~~~~~~~-~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 319 (841)
.........+..+. .-.|.+.|-.++=+|+||.--+. ..-..+...+.. .|..||++|.+......
T Consensus 541 ~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 541 MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDN 610 (986)
T ss_dssp HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHH
T ss_pred hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHH
Confidence 00111223333333 33455666666778999986432 222222222222 36678888888765543
No 425
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.04 E-value=0.47 Score=51.35 Aligned_cols=90 Identities=18% Similarity=0.167 Sum_probs=49.1
Q ss_pred EEEEEccCCCcHHHHH-HHHhcCccccCCCCc-EEEEEeCCccC-HHHHHHHHHHHhhhccccccCCCCCCC-HHH----
Q 045150 193 VISIYGMGGLGKTTLA-KKLYHSSDVKNKFEC-CAWVSVSQDYQ-FQYLLLRIIKSFNIISSAEEGGLENKS-EED---- 264 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~---- 264 (841)
-++|+|..|+|||+|| ..+.+. . +-+. ++++-+.+... ..++.+++...=......--....+.. ...
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAP 239 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHH
Confidence 5799999999999995 577773 2 3453 57777777554 334444443211000000000000111 111
Q ss_pred -HHHHHHHHc--cCceEEEEEecCC
Q 045150 265 -LERCLYKSL--QGKTYLMVLDDVW 286 (841)
Q Consensus 265 -~~~~l~~~L--~~kr~LlVlDdv~ 286 (841)
..-.+.+++ +++.+|+++||+-
T Consensus 240 ~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 240 YAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEecHH
Confidence 112345555 6899999999984
No 426
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=89.96 E-value=0.083 Score=55.69 Aligned_cols=43 Identities=28% Similarity=0.261 Sum_probs=30.5
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+++|.+..++.+...+..... .-+.|+|.+|+|||++|+.+.+
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~~---~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPGI---GGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGGG---CCEEEECCGGGCTTHHHHHHHH
T ss_pred hccChHHHHHHHHHHhhCCCC---ceEEEECCCCccHHHHHHHHHH
Confidence 488987755544433332211 2388999999999999999987
No 427
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.95 E-value=0.16 Score=51.15 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.++-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 428
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.90 E-value=0.16 Score=47.79 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045150 193 VISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 429
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.90 E-value=0.26 Score=48.18 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcC
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
-..|.|.|+.|+||||+++.+.+.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999983
No 430
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.86 E-value=0.17 Score=49.23 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
...+|+|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998873
No 431
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.86 E-value=0.16 Score=51.20 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 432
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.86 E-value=0.18 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+|.|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999998
No 433
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.86 E-value=0.15 Score=49.55 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999987
No 434
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.84 E-value=0.15 Score=49.76 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 435
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.82 E-value=0.25 Score=45.36 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 436
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.82 E-value=0.16 Score=50.34 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||.+.++-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3899999999999999999986
No 437
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.81 E-value=0.16 Score=50.80 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 438
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.76 E-value=0.15 Score=49.32 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 439
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.71 E-value=0.16 Score=52.07 Aligned_cols=22 Identities=36% Similarity=0.351 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 440
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.66 E-value=0.16 Score=48.70 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+|.|.|++|+||+|.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 441
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.65 E-value=0.17 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||.+.++-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3899999999999999999976
No 442
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.63 E-value=0.17 Score=50.38 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999986
No 443
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.61 E-value=0.19 Score=51.88 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=27.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ 231 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 231 (841)
..++|+|+|.||+||||+|..+.. .....=..++-|....
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~--~La~~G~~VlliD~D~ 79 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDP 79 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESS
T ss_pred CceEEEEECCCCccHHHHHHHHHH--HHHHCCCeEEEEeCCC
Confidence 457899999999999999998876 2222222456666543
No 444
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.61 E-value=0.17 Score=51.18 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||.+.++-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3899999999999999999986
No 445
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.57 E-value=0.18 Score=47.77 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcC
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 446
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.37 E-value=0.18 Score=51.19 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|+|+.|+||||||..++.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 5899999999999999999987
No 447
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.17 E-value=0.18 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 448
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.17 E-value=0.18 Score=49.59 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..|.|.|+.|+||||+|+.+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 449
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.12 E-value=0.19 Score=54.08 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=32.3
Q ss_pred CCCcccCCChHHHHHHHhcC-----------CCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 167 ENPVGFEDDTDVLLSKLLAG-----------DEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..++|.++.++.+...+... .....+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35677776666665554210 001234588999999999999999987
No 450
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.08 E-value=0.24 Score=49.01 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=27.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQ 231 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 231 (841)
.++.|.|.+|+||||||.+++.. ....=..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 48999999999999999888653 222223577887544
No 451
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.04 E-value=0.21 Score=49.89 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=56.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe-CCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHH
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV-SQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCL 269 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 269 (841)
-.+++|+|+.|+|||||++.+.. .+...+...+++.- .-.+-... ..... .+..-+... ..+...+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~-------~~~~v-~q~~~gl~~---~~l~~~l 91 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKH-------KKSIV-NQREVGEDT---KSFADAL 91 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCC-------SSSEE-EEEEBTTTB---SCHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCC-------cceee-eHHHhCCCH---HHHHHHH
Confidence 36899999999999999999886 22222233333321 10000000 00000 000001111 2334566
Q ss_pred HHHccCceEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchHHh
Q 045150 270 YKSLQGKTYLMVLDDVWRKVDWENLRRAFPDNKNGSRVIITTRNREVA 317 (841)
Q Consensus 270 ~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 317 (841)
.+.|..++=+|++|..-+.+....+.... ..|.-|++||....+.
T Consensus 92 a~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 92 RAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 66665556688889986544333332221 2366688888765543
No 452
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.02 E-value=0.61 Score=50.59 Aligned_cols=107 Identities=17% Similarity=0.209 Sum_probs=55.2
Q ss_pred HHHHHHhcCCCCCeEEEEEEccCCCcHHHHH-HHHhcCccc----cCCCC-cEEEEEeCCccC-HHHHHHHHHHHhhhcc
Q 045150 178 VLLSKLLAGDEPRRLVISIYGMGGLGKTTLA-KKLYHSSDV----KNKFE-CCAWVSVSQDYQ-FQYLLLRIIKSFNIIS 250 (841)
Q Consensus 178 ~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~~ 250 (841)
+.++.|..-.. =.-++|+|..|+|||+|| ..+.+.... .++-+ .++++-+.+... ..++.+++...=....
T Consensus 151 raID~l~Pigr--GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~ 228 (510)
T 2ck3_A 151 KAVDSLVPIGR--GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKY 228 (510)
T ss_dssp HHHHHHSCCBT--TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGG
T ss_pred eeecccccccc--CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCccc
Confidence 45555553221 125799999999999994 566663221 12344 377888887654 3444444433110000
Q ss_pred ccccCCCCCCC-HHH-----HHHHHHHHc--cCceEEEEEecCC
Q 045150 251 SAEEGGLENKS-EED-----LERCLYKSL--QGKTYLMVLDDVW 286 (841)
Q Consensus 251 ~~~~~~~~~~~-~~~-----~~~~l~~~L--~~kr~LlVlDdv~ 286 (841)
..--....+.. ... ..-.+.+++ +++.+|+++||+-
T Consensus 229 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 229 TIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 00000000111 111 122345555 6899999999984
No 453
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.98 E-value=0.38 Score=61.17 Aligned_cols=102 Identities=21% Similarity=0.238 Sum_probs=61.4
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccC
Q 045150 176 TDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEG 255 (841)
Q Consensus 176 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 255 (841)
...+..+|.-+.-+.-+++.|+|++|+|||+||.++... ...+=..++|+++...++... ++.++.+...-
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l-- 1482 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNL-- 1482 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTC--
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhc--
Confidence 344555554122123468999999999999999999873 333334578888887776655 44444221100
Q ss_pred CC-CCCCHHHHHHHHHHHc-cCceEEEEEecCC
Q 045150 256 GL-ENKSEEDLERCLYKSL-QGKTYLMVLDDVW 286 (841)
Q Consensus 256 ~~-~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~ 286 (841)
.+ .....++..+.+++.. +.+.-+||+|.+.
T Consensus 1483 ~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1483 LCSQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred eeecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 00 0112345556666555 3566799999994
No 454
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.98 E-value=0.18 Score=49.52 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
-.+|+|.|..|+||||+++.+..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999887
No 455
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.94 E-value=0.2 Score=49.31 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999886
No 456
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.94 E-value=0.2 Score=54.11 Aligned_cols=23 Identities=48% Similarity=0.569 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+|.|+|.+|+||||+|..+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999887
No 457
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.92 E-value=0.2 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|+.|.|||||++.+..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 4899999999999999999986
No 458
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.89 E-value=0.16 Score=48.11 Aligned_cols=25 Identities=32% Similarity=0.252 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999874
No 459
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.87 E-value=0.2 Score=47.75 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcC
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 460
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=88.86 E-value=1.4 Score=58.33 Aligned_cols=137 Identities=14% Similarity=0.133 Sum_probs=71.9
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHH
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFNIISSAEEGGLENKSEEDLERCLYKS 272 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (841)
-|.++|++|.|||++|+.+... . ..+ ..+.++.+...+...+++.+-..+....... +.... -.
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~--~-~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~--g~~~~----------P~ 1332 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRN--S-SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSK--GLTLL----------PK 1332 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS--C-SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETT--TEEEE----------EB
T ss_pred eEEEECCCCCCHHHHHHHHHhc--C-CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccC--Ccccc----------CC
Confidence 5789999999999999777663 1 223 3456777776666666555544433211000 00000 00
Q ss_pred ccCceEEEEEecCCCh--------hhHHHHHhhCCCC-----CC-------CcEEEEEecchH-Hhh-----cCCCccee
Q 045150 273 LQGKTYLMVLDDVWRK--------VDWENLRRAFPDN-----KN-------GSRVIITTRNRE-VAE-----RSDEKTYV 326 (841)
Q Consensus 273 L~~kr~LlVlDdv~~~--------~~~~~l~~~l~~~-----~~-------gs~ilvTtR~~~-v~~-----~~~~~~~~ 326 (841)
-.+|+.++.+||+.-. ...+-++..+..+ .. +..+|.++-... ..+ .......+
T Consensus 1333 ~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~v 1412 (2695)
T 4akg_A 1333 SDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAI 1412 (2695)
T ss_dssp SSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEE
T ss_pred CCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeE
Confidence 0367889999996421 1233333332211 11 123344443221 111 11111257
Q ss_pred EecCCCChhHHHHHHHhHh
Q 045150 327 HKLRFLRGDESWLLFCEKA 345 (841)
Q Consensus 327 ~~l~~L~~~~~~~lf~~~~ 345 (841)
+.+...++++-..+|....
T Consensus 1413 i~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 8888888888888887654
No 461
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.84 E-value=0.19 Score=54.20 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
...+|.|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 462
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.81 E-value=0.22 Score=50.10 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=26.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVS 230 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 230 (841)
++|+|.|.||+||||+|..+.. .....=..+.-|...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~--~la~~G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS--GLHAMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHH--HHHHCCCcEEEEcCC
Confidence 5788889999999999988886 333222245666543
No 463
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.76 E-value=0.23 Score=50.76 Aligned_cols=22 Identities=41% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|.+|+||||++..++.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 464
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.70 E-value=0.24 Score=50.25 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+|.|+|+.|+||||||..++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 46899999999999999999987
No 465
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.64 E-value=0.57 Score=45.09 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..|.|.|..|+||||+++.+.+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5889999999999999999987
No 466
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.52 E-value=0.23 Score=50.03 Aligned_cols=21 Identities=43% Similarity=0.754 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999986
No 467
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.50 E-value=0.22 Score=50.45 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.++.|+|.+|+||||||..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999999885
No 468
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.46 E-value=0.26 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999864
No 469
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.38 E-value=0.21 Score=58.06 Aligned_cols=48 Identities=29% Similarity=0.275 Sum_probs=33.3
Q ss_pred CCCcccCCChHHHHHHHhcC---C-------CCCeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 167 ENPVGFEDDTDVLLSKLLAG---D-------EPRRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~---~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.++.|.++.++++.+.+.-. . ....+-+.++|++|.|||.+|+.+++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 34567777676666554321 0 112345789999999999999999983
No 470
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.35 E-value=0.3 Score=45.84 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcC
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 471
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.34 E-value=0.19 Score=51.49 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4899999999999999999976
No 472
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.20 E-value=0.27 Score=50.15 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=25.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVS 230 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 230 (841)
++|+|.|.||+||||+|..+..- ....=..+.-|...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D 39 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCD 39 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC
T ss_pred eEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 67888999999999999988862 22221235555543
No 473
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.18 E-value=0.26 Score=46.40 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
+.|.|.|..|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999873
No 474
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.08 E-value=0.23 Score=45.21 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045150 193 VISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 475
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.04 E-value=0.46 Score=54.09 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=34.0
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.++|.+..++.+...+..+. .+.|+|..|+||||||+.+..
T Consensus 42 ~i~G~~~~l~~l~~~i~~g~-----~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQKR-----HVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTTC-----CEEEECCTTSSHHHHHHHHHH
T ss_pred eEECchhhHhhccccccCCC-----EEEEEeCCCCCHHHHHHHHhc
Confidence 57888777777776666553 689999999999999999988
No 476
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.03 E-value=0.12 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=18.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..+|+|.|..|+||||+|+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999886
No 477
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.91 E-value=0.26 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|..|.|||||.+.+..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999986
No 478
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.91 E-value=0.37 Score=51.48 Aligned_cols=93 Identities=13% Similarity=0.261 Sum_probs=50.1
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcccc--------CCCC-cEEEEEeCCccC-HHHHHHHHHHHhhhccccc--cCCCCCC
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVK--------NKFE-CCAWVSVSQDYQ-FQYLLLRIIKSFNIISSAE--EGGLENK 260 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~--~~~~~~~ 260 (841)
-++|.|..|+|||+|+.++.+..... ++=+ .++++-+.+... ..++.+++.+. +...... -...+..
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~-g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERT-GALSRSVLFLNKADDP 227 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHT-SGGGGEEEEEEETTSC
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhc-ccccceEEEEECCCCC
Confidence 46899999999999999998843321 1112 566777776543 34444443221 1000000 0000111
Q ss_pred CHH-----HHHHHHHHHc---cCceEEEEEecCC
Q 045150 261 SEE-----DLERCLYKSL---QGKTYLMVLDDVW 286 (841)
Q Consensus 261 ~~~-----~~~~~l~~~L---~~kr~LlVlDdv~ 286 (841)
... ...-.+.+++ +++.+|+++||+-
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 111 1222456666 3799999999994
No 479
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.90 E-value=0.28 Score=45.30 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcC
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.--|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999999875
No 480
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.90 E-value=0.26 Score=47.48 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=24.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEe
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSV 229 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 229 (841)
-.|.+.|.||+||||+|..+... ..+..++. ..+.+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~-l~~~G~~V-~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA-QLRQGVRV-MAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH-HHHTTCCE-EEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHH-HHHCCCCE-EEEEe
Confidence 35788999999999998888873 22334544 34444
No 481
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.76 E-value=0.39 Score=44.43 Aligned_cols=25 Identities=44% Similarity=0.539 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999874
No 482
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.65 E-value=0.29 Score=45.81 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045150 193 VISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~ 213 (841)
+.+|+|..|.|||||+..++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999875
No 483
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.63 E-value=0.28 Score=45.44 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999874
No 484
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=87.62 E-value=0.45 Score=51.97 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCH-HHHHHH
Q 045150 178 VLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQF-QYLLLR 241 (841)
Q Consensus 178 ~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~ 241 (841)
++++.|..-.. =.-++|.|..|+|||+|++++.+. .+-+.++++-+.+.... .+++++
T Consensus 216 rvID~l~Pigk--Gqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 216 RVIDTFFPQAK--GGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHHSCEET--TCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHH
T ss_pred chhhccCCccc--CCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 45565553211 136899999999999999999873 23357888888887654 344443
No 485
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.61 E-value=0.55 Score=44.59 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=24.2
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEE
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVS 228 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 228 (841)
.|+|-|..|+||||.++.+++ ..+..-..+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEE
Confidence 367889999999999999988 4443333344443
No 486
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.57 E-value=0.28 Score=44.89 Aligned_cols=24 Identities=17% Similarity=0.512 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcC
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.--|.|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999999864
No 487
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.55 E-value=0.29 Score=48.30 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
..|.|.|..|+||||+++.+.+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 488
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=87.49 E-value=0.55 Score=50.52 Aligned_cols=93 Identities=15% Similarity=0.225 Sum_probs=50.8
Q ss_pred EEEEEccCCCcHHHHHHHHhcCccccCC--CCcEEEEEeCCccC-HHHHHHHHHHHhhhccccccCCCCCCCH------H
Q 045150 193 VISIYGMGGLGKTTLAKKLYHSSDVKNK--FECCAWVSVSQDYQ-FQYLLLRIIKSFNIISSAEEGGLENKSE------E 263 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~------~ 263 (841)
-++|.|..|+|||+|+.+++++....+. =+.++++-+.+... ..++.+++...=......--....++.. .
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~ 233 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTP 233 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHH
Confidence 4688999999999999999985332111 13567777776543 3455555543211100000000001110 1
Q ss_pred HHHHHHHHHc---cCceEEEEEecC
Q 045150 264 DLERCLYKSL---QGKTYLMVLDDV 285 (841)
Q Consensus 264 ~~~~~l~~~L---~~kr~LlVlDdv 285 (841)
...-.+.+++ +++.+|+++||+
T Consensus 234 ~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 234 RMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1222355665 479999999997
No 489
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.42 E-value=0.28 Score=44.84 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045150 193 VISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
-|+|+|.+|+|||||.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998764
No 490
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.42 E-value=0.28 Score=51.21 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
.+++|+|+.|.|||||.+.++-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 3899999999999999999986
No 491
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.39 E-value=0.44 Score=44.45 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
...-|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999874
No 492
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.36 E-value=0.28 Score=46.10 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999865
No 493
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.34 E-value=0.27 Score=50.83 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcC
Q 045150 190 RRLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 190 ~~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
...+++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4679999999999999999999853
No 494
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.31 E-value=0.3 Score=44.75 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045150 192 LVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999865
No 495
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.26 E-value=0.37 Score=44.18 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcC
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 496
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.25 E-value=0.29 Score=51.72 Aligned_cols=23 Identities=35% Similarity=0.247 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 045150 191 RLVISIYGMGGLGKTTLAKKLYH 213 (841)
Q Consensus 191 ~~vi~I~G~gGiGKTtLa~~v~~ 213 (841)
-.+++|+|+.|.|||||++.+..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999986
No 497
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.20 E-value=0.31 Score=44.75 Aligned_cols=23 Identities=26% Similarity=0.735 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHS 214 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~ 214 (841)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999874
No 498
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.17 E-value=0.61 Score=45.66 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=26.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEE
Q 045150 192 LVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVS 228 (841)
Q Consensus 192 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 228 (841)
..|.|.|..|+||||+++.+.+.-. ..+++.+....
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~r 63 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTR 63 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeec
Confidence 5899999999999999999987321 23455444443
No 499
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=87.02 E-value=0.8 Score=49.46 Aligned_cols=89 Identities=17% Similarity=0.229 Sum_probs=49.2
Q ss_pred EEEEEccCCCcHHHHH-HHHhcCccccCCCCc-EEEEEeCCccC-HHHHHHHHHHHhhhccccc-cCCCCCCC-HH----
Q 045150 193 VISIYGMGGLGKTTLA-KKLYHSSDVKNKFEC-CAWVSVSQDYQ-FQYLLLRIIKSFNIISSAE-EGGLENKS-EE---- 263 (841)
Q Consensus 193 vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~-~~~~~~~~-~~---- 263 (841)
-++|.|..|+|||+|| ..+.+. .+-+. ++++-+.+... ..++.+++.+. +...... -....+.. ..
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~-g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEH-GALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHH-SCSTTEEEEEECTTSCHHHHHHH
T ss_pred EEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhc-CcccceEEEEECCCCChHHHHHH
Confidence 4789999999999996 567762 23343 67888887654 34444443322 1100000 00000111 01
Q ss_pred -HHHHHHHHHc--cCceEEEEEecCC
Q 045150 264 -DLERCLYKSL--QGKTYLMVLDDVW 286 (841)
Q Consensus 264 -~~~~~l~~~L--~~kr~LlVlDdv~ 286 (841)
...-.+.+++ +++.+||++||+-
T Consensus 239 ~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 239 PYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEecChH
Confidence 1122345555 6899999999994
No 500
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.86 E-value=0.89 Score=57.95 Aligned_cols=111 Identities=19% Similarity=0.212 Sum_probs=67.9
Q ss_pred CCcccCCChHHHHHHHhcCCCCCeEEEEEEccCCCcHHHHHHHHhcCccccCCCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 045150 168 NPVGFEDDTDVLLSKLLAGDEPRRLVISIYGMGGLGKTTLAKKLYHSSDVKNKFECCAWVSVSQDYQFQYLLLRIIKSFN 247 (841)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 247 (841)
...+...-...|-..|..+.-+.-+++.|.|.+|+||||||.+++.. ....=..++|++....++... ++.++
T Consensus 360 ~~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~-----a~~lG 432 (2050)
T 3cmu_A 360 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLG 432 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTT
T ss_pred CCceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH-----HHHcC
Confidence 34555566667777665111112358999999999999999999874 333334689998877776542 45554
Q ss_pred hccccccCCCCCCCHHHHHHHHHHHc-cCceEEEEEecCC
Q 045150 248 IISSAEEGGLENKSEEDLERCLYKSL-QGKTYLMVLDDVW 286 (841)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~ 286 (841)
.....-- -....+.+++.+.+++.. +.+.-+||+|.+.
T Consensus 433 vd~~~L~-I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 433 VDIDNLL-CSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp CCTTTCE-EECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred CCHHHeE-EeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 4221100 001134566666666554 3455699999884
Done!