BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045151
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R3V|A Chain A, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
pdb|2R3V|B Chain B, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
pdb|2R3V|C Chain C, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
pdb|2R3V|D Chain D, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
Length = 396
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 202/385 (52%), Gaps = 25/385 (6%)
Query: 7 APGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPXXXXXXXTLKLVLKDMELNFSWSVT 66
APGK+IL GEHAVVHG A+A ++L T++ L+ + L L ++ + +W V
Sbjct: 10 APGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIKRAWDVA 65
Query: 67 RIKA-TLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSII 125
R+++ S L +TPT+ +E +K +A L D+ + E L AFL+LY SI
Sbjct: 66 RLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVL-----AFLYLYLSIC 120
Query: 126 GFKPA----TVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSV-HLDKNHQGWLTYGES 180
+ A +VV S+LP GAGLGSSAA+ V L AALL + + K+ + +
Sbjct: 121 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE 180
Query: 181 DLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVG 240
DL+L+NKWAF+GE++IHG PSG+DN VST+G +++ G ++ +K + L++L+TNTKV
Sbjct: 181 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP 240
Query: 241 RNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTII----ESPTPDDLSITXXXXXX 296
RNTRALVAGV R ++ P+ ++ + ++D+IS E ++ E+P P+ +
Sbjct: 241 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLV------L 294
Query: 297 XXXXXXNQGLLQCMGVSHSSIETVLRTTLKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 356
NQ L +GV H+S++ + + T
Sbjct: 295 EELIDMNQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVE 354
Query: 357 XXXXXXXXCGFQCLIAGIGGTGVEV 381
CGF CL IG GV +
Sbjct: 355 ATKQALTSCGFDCLETSIGAPGVSI 379
>pdb|1KVK|A Chain A, The Structure Of Binary Complex Between A Mammalian
Mevalonate Kinase And Atp: Insights Into The Reaction
Mechanism And Human Inherited Disease
pdb|2R42|A Chain A, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
Length = 395
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 188/388 (48%), Gaps = 35/388 (9%)
Query: 7 APGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPXXXXXXXTLKLVLKDMELNFSWSVT 66
APGK+IL GEHAVVHG A+A ++L T++ LR + L L ++ + W V
Sbjct: 10 APGKVILHGEHAVVHGKVALAVALNLRTFLVLR----PQSNGKVSLNLPNVGIKQVWDV- 64
Query: 67 RIKATLSHLGSPFPS-----TPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLY 121
ATL L + F PT +E +K +A +P +G +
Sbjct: 65 ---ATLQLLDTGFLEQGDVPAPTLEQLEKLKKVA------GLPRDCVGNEGLSLLAFLYL 115
Query: 122 TSIIGFKPAT-----VVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWL- 175
I K T ++V S+LP GAGLGSSAA+ V + AALL + V +G +
Sbjct: 116 YLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIG 175
Query: 176 TYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLIT 235
++ E DL +NKWA+EGE++IHG PSG+DN+VST+G ++++ G M+ +K L++L+T
Sbjct: 176 SWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLKRLPALQILLT 235
Query: 236 NTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKE----LSTIIESPTPDDLSITX 291
NTKV R+T+ALVAGV R ++ P+ M+ + ++D+IS E L + +P P+ +
Sbjct: 236 NTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLV-- 293
Query: 292 XXXXXXXXXXXNQGLLQCMGVSHSSIETVLRTTLKFXXXXXXXXXXXXXXXXXXXXXXXX 351
NQ L +GV H+S++ + + T
Sbjct: 294 ----LEELMDMNQHHLNALGVGHASLDQLCQVTAAHGLHSKLTGAGGGGCGITLLKPGLE 349
Query: 352 XXXXXXXXXXXXXCGFQCLIAGIGGTGV 379
CGF C IG GV
Sbjct: 350 RAKVEAAKQALTGCGFDCWETSIGAPGV 377
>pdb|4HAC|A Chain A, Crystal Structure Of The Mevalonate Kinase From An
Archaeon Methanosarcina Mazei
Length = 321
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 129/316 (40%), Gaps = 87/316 (27%)
Query: 3 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPXXXXXXXTLKLVLKDMELNFS 62
V APGKI L GEHAVV+G TA+A ++L T V ELN S
Sbjct: 22 VSCSAPGKIYLFGEHAVVYGETAIACAVELRTRVR-------------------AELNDS 62
Query: 63 WSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYT 122
+ I++ + G F P S + ++IP + L+
Sbjct: 63 IT---IQSQIGRTGLDFEKHPYV-------SAVIEKXRKSIPINGVFLT----------- 101
Query: 123 SIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDL 182
V SD+P+G+GLGSSAA +T A +G+LN + +G S L
Sbjct: 102 -----------VDSDIPVGSGLGSSAA----VTIASIGALNEL---------FGFGLS-L 136
Query: 183 DLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLK-----MLITNT 237
+ K E E + G S D VST+G ++ I LK ++I +T
Sbjct: 137 QEIAKLGHEIEIKVQGAASPTDTYVSTFGGVV--------TIPERRKLKTPDCGIVIGDT 188
Query: 238 KVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITXXXXXXX 297
V +T+ LVA V + +PD + + ++ IS+ + L ++
Sbjct: 189 GVFSSTKELVANVRQLRESYPDLIEPLXTSIGKISR---------IGEQLVLSGDYASIG 239
Query: 298 XXXXXNQGLLQCMGVS 313
NQGLL +GV+
Sbjct: 240 RLXNVNQGLLDALGVN 255
>pdb|4HAC|B Chain B, Crystal Structure Of The Mevalonate Kinase From An
Archaeon Methanosarcina Mazei
Length = 321
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 129/316 (40%), Gaps = 87/316 (27%)
Query: 3 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPXXXXXXXTLKLVLKDMELNFS 62
V APGKI L GEHAVV+G TA+A ++L T V ELN S
Sbjct: 22 VSCSAPGKIYLFGEHAVVYGETAIACAVELRTRVR-------------------AELNDS 62
Query: 63 WSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYT 122
+ I++ + G F P S + ++IP + L+
Sbjct: 63 IT---IQSQIGRTGLDFEKHPYV-------SAVIEKXRKSIPINGVFLT----------- 101
Query: 123 SIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDL 182
V SD+P+G+GLGSSAA +T A +G+LN + +G S L
Sbjct: 102 -----------VDSDIPVGSGLGSSAA----VTIASIGALNEL---------FGFGLS-L 136
Query: 183 DLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLK-----MLITNT 237
+ K E E + G S D VST+G ++ I LK ++I +T
Sbjct: 137 QEIAKLGHEIEIKVQGAASPTDTYVSTFGGVV--------TIPERRKLKTPDCGIVIGDT 188
Query: 238 KVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITXXXXXXX 297
V +T+ LVA V + +PD + + ++ IS+ + L ++
Sbjct: 189 GVFSSTKELVANVRQLRESYPDLIEPLXTSIGKISR---------IGEQLVLSGDYASIG 239
Query: 298 XXXXXNQGLLQCMGVS 313
NQGLL +GV+
Sbjct: 240 RLXNVNQGLLDALGVN 255
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 107/277 (38%), Gaps = 59/277 (21%)
Query: 8 PGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPXXXXXXXTLKLVLKDMELNFSWSVTR 67
P K+IL GEHAVV+G A++ IDL + + ++ + L L D+ + ++
Sbjct: 11 PSKVILFGEHAVVYGYRAISMAIDLTSTIEIK----ETQEDEIILNLNDLNKSLGLNLNE 66
Query: 68 IKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTS-IIG 126
IK ++ N + K L + +L G
Sbjct: 67 IKN---------------------------INPNNFGDFKYCLCAIKNTLDYLNIEPKTG 99
Query: 127 FKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLN 186
FK + ++S +P+ GLGSSA+ + A+ G N D D +
Sbjct: 100 FK---INISSKIPISCGLGSSASITIGTIKAVSGFYNKELKD--------------DEIA 142
Query: 187 KWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVGRNTRAL 246
K + EK I GK S D + TY I++ ++ IK + +N + L
Sbjct: 143 KLGYMVEKEIQGKASITDTSTITYKGILEIKNNKFRKIKGEFE--------EFLKNCKFL 194
Query: 247 VAGVSERSMRHPDAMSSV--FNAVDSISKELSTIIES 281
+ +R + + ++ V D I KE+ +I+
Sbjct: 195 IVYAEKRKKKTAELVNEVAKIENKDEIFKEIDKVIDE 231
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase
Length = 324
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 105/292 (35%), Gaps = 85/292 (29%)
Query: 6 RAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPXXXXXXXTLKLVLKDMELN----- 60
P K+IL GEHAVV+G A++ IDL + + ++ L + K + LN
Sbjct: 6 ETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIK 65
Query: 61 ---------FSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLS 111
F + + IK TL +L P T
Sbjct: 66 NINPNNFGDFKYCLCAIKNTLDYLNIE-PKT----------------------------- 95
Query: 112 SGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNH 171
GFK + ++S +P+ GLGSSA+ + A+ G N D
Sbjct: 96 --------------GFK---INISSKIPISCGLGSSASITIGTIKAVSGFYNKELKD--- 135
Query: 172 QGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLK 231
D + K + EK I GK S D + TY I++ ++ IK
Sbjct: 136 -----------DEIAKLGYMVEKEIQGKASITDTSTITYKGILEIKNNKFRKIKGEFE-- 182
Query: 232 MLITNTKVGRNTRALVAGVSERSMRHPDAMSSV--FNAVDSISKELSTIIES 281
+ +N + L+ +R + + ++ V D I KE+ +I+
Sbjct: 183 ------EFLKNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKEIDKVIDE 228
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
pdb|2HFU|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
Length = 332
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 125/324 (38%), Gaps = 80/324 (24%)
Query: 9 GKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPXXXXXXXTLKLVLKDMELNFSWSVTRI 68
GK+IL GEH VVHG+ A+ A I YT L E+N ++
Sbjct: 20 GKVILFGEHFVVHGAEAIVAGISEYTECRL-------------------EINPGVPGLQV 60
Query: 69 KATLSHLGSPFPSTPTTCSM---EVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSII 125
P+ P + E IK+ +++D + + GL
Sbjct: 61 D-------DQRPAIPGYIAQKRDEQIKAHQLVLDHLKVDLSGDGLK-------------- 99
Query: 126 GFKPATVVVTSDLPLGAGLGSSAAFCVSLTAAL--LGSLNSVHLDKNHQGWLTYGESDLD 183
+ + L +G+G+SA+ V+ + AL L LN LT E +L
Sbjct: 100 ------MFIGGPLVPSSGIGASASDVVAFSRALSELYQLN-----------LTDEEVNLS 142
Query: 184 LLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGN----MTCIKSNMPLKMLITNTKV 239
AF GE HG PSG DNT +TYG +I +R N I L +++ T +
Sbjct: 143 -----AFVGEGGYHGTPSGADNTAATYGGLILYRRQNGKSVFKPIAFQQRLYLVVVGTGI 197
Query: 240 GRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITXXXXXXXXX 299
+T +V V + + P ++ D+ + +S E+ DL
Sbjct: 198 NASTAKVVNDVHKMKQQQPVQFKRLY---DNYTHIVSQAREALQKGDLQ------RLGQL 248
Query: 300 XXXNQGLLQCMGVSHSSIETVLRT 323
N L + + VS +E++++T
Sbjct: 249 MNANHDLCRQIDVSCRELESIVQT 272
>pdb|2HFS|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase
pdb|2HFS|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase
Length = 332
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 127/324 (39%), Gaps = 80/324 (24%)
Query: 9 GKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPXXXXXXXTLKLVLKDMELNFSWSVTRI 68
GK+IL GEH VVHG+ A+ A I YT L E+N ++
Sbjct: 20 GKVILFGEHFVVHGAEAIVAGISEYTECRL-------------------EINPGVPGLQV 60
Query: 69 KATLSHLGSPFPSTPTTCSM---EVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSII 125
P+ P + E IK+ +++D + + GL
Sbjct: 61 D-------DQRPAIPGYIAQKRDEQIKAHQLVLDHLKVDLSGDGLKX------------- 100
Query: 126 GFKPATVVVTSDLPLGAGLGSSAAFCVSLTAAL--LGSLNSVHLDKNHQGWLTYGESDLD 183
F +V +S G+G+SA+ V+ + AL L LN LT E +L
Sbjct: 101 -FIGGPLVPSS------GIGASASDVVAFSRALSELYQLN-----------LTDEEVNLS 142
Query: 184 LLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGN----MTCIKSNMPLKMLITNTKV 239
AF GE HG PSG DNT +TYG +I +R N I L +++ T +
Sbjct: 143 -----AFVGEGGYHGTPSGADNTAATYGGLILYRRQNGKSVFKPIAFQQRLYLVVVGTGI 197
Query: 240 GRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITXXXXXXXXX 299
+T +V V + + P ++ D+ + +S E+ DL
Sbjct: 198 NASTAKVVNDVHKXKQQQPVQFKRLY---DNYTHIVSQAREALQKGDLQ------RLGQL 248
Query: 300 XXXNQGLLQCMGVSHSSIETVLRT 323
N L + + VS +E++++T
Sbjct: 249 XNANHDLCRQIDVSCRELESIVQT 272
>pdb|2X7I|A Chain A, Crystal Structure Of Mevalonate Kinase From Methicillin-
Resistant Staphylococcus Aureus Mrsa252
Length = 308
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 188 WAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKS-NMPLKMLITNTKVGRNTRAL 246
WA E+I HGKPSG+D G + F+ G+ +K+ ++ M++ +T V +TR
Sbjct: 134 WA---EQIAHGKPSGIDTQTIVSGKPVWFQKGHAETLKTLSLDGYMVVIDTGVKGSTRQA 190
Query: 247 VAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITXXXXXXXXXXXXNQGL 306
V V + P MS V + + + S +IE + L+
Sbjct: 191 VHDV-HKLCEDPQYMSHVKH-IGKLVLRASDVIEHHKFEALADIFNECHAD--------- 239
Query: 307 LQCMGVSHSSIETVLR 322
L+ + VSH IE +++
Sbjct: 240 LKALTVSHDKIEQLMK 255
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 134 VTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLD 168
+T DLPLGAGL SSA+F V + +L L ++++D
Sbjct: 94 ITGDLPLGAGLSSSASFEVGIL-EVLNQLYNLNID 127
>pdb|3K17|A Chain A, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
pdb|3K17|B Chain B, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
pdb|3K17|C Chain C, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
pdb|3K17|D Chain D, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
Length = 365
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 68/163 (41%), Gaps = 43/163 (26%)
Query: 2 EVKARAPGKIILAGEHAVVH-GSTAVAACIDLYTYVSLRFPXXXXXXXTLKLVLKDMELN 60
+++ + PGK+ +AGE+AVV G TA+ ++ Y + L L+D E N
Sbjct: 6 KLQVKIPGKLYVAGEYAVVESGHTAILTAVNRY----------------ITLTLEDSERN 49
Query: 61 FSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQ-NIPEAKIGLSSGATAFLW 119
W + H +P S P ++ E NI AT F
Sbjct: 50 ELW--------IPHYENPV-SWPIGGELKPDGEHWTFTAEAINI----------ATTF-- 88
Query: 120 LYTSIIGFKPATVVVTSDL--PLGA--GLGSSAAFCVSLTAAL 158
L + I P V+ ++L GA GLGSSAA V++ AL
Sbjct: 89 LKSEGIELTPVKXVIETELIDQSGAKYGLGSSAAATVAVINAL 131
>pdb|2OI2|A Chain A, Streptococcus Pneumoniae Mevalonate Kinase In Complex With
Diphosphomevalonate
Length = 292
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 177 YGESDL--DLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKF-RSGNMTCIKSNMPLKML 233
Y ++DL D+L E I H PSGLD I+F ++ T ++ ++ ++
Sbjct: 106 YYQADLPHDVLEILVNRAEMIAHMNPSGLDAKTCLSDQPIRFIKNVGFTELEMDLSAYLV 165
Query: 234 ITNTKVGRNTRALVAGVSER 253
I +T V +TR + V +
Sbjct: 166 IADTGVYGHTREAIQVVQNK 185
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 6 RAPGKIILAGEHAVVHGSTAVA 27
+A KIIL GEHAVV+G A++
Sbjct: 9 QAHSKIILIGEHAVVYGYPAIS 30
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 134 VTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLD 168
V+ +LPLGAGL SSA+F V + L L ++ LD
Sbjct: 92 VSGNLPLGAGLSSSASFEVGILET-LDKLYNLKLD 125
>pdb|2HKE|A Chain A, Mevalonate Diphosphate Decarboxylase From Trypanosoma
Brucei
pdb|2HKE|B Chain B, Mevalonate Diphosphate Decarboxylase From Trypanosoma
Brucei
Length = 380
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 67 RIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIG 126
R+++ L HL S TC E+ +V E N P A G++S A+ + + ++I
Sbjct: 77 RVQSMLLHLRS-------TCPEELKNKKVNIVSENNFPTA-AGMASSASGYCAMSAALIR 128
Query: 127 FKPATVVVTSDLPLGAGLGSSAAF 150
+T V+ LG+G +AF
Sbjct: 129 AFKSTTNVSMLARLGSGSACRSAF 152
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 103 IPEAKIGLSSGATAFLWLYTSIIGFKPA------TVVVTSDLPLGAGLGSSAAFCVS 153
+P A+ L G + +I + PA + VV S +PLG GL SSA+ V+
Sbjct: 99 LPTAQRSLEPGTPRWANYVKGVIQYYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVA 155
>pdb|2QGA|B Chain B, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp
Bound
pdb|2QGA|C Chain C, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp
Bound
Length = 465
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 114 ATAFLWLYTSIIGFKPATVVVT--SDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKN- 170
A AF L++S + P + + SD + +GSS A+C+ ++L LN + +D+
Sbjct: 317 ANAFFKLFSSKL---PTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSVLKGLNKIDIDRRN 373
Query: 171 -----HQGWLTYGE 179
+Q W T E
Sbjct: 374 LEEELNQNWSTLAE 387
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 31/161 (19%)
Query: 5 ARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPXXXXXXXTL-----KLVLKDMEL 59
AR+PG++ L GEH + + ID +++ TL K + +L
Sbjct: 68 ARSPGRVNLIGEHIDYCDFSVLPLAIDFDMLCAVKVLNEKNPSITLINADPKFAQRKFDL 127
Query: 60 NFSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKI-GLSSGATAFL 118
S I ++S + F C + V S + + A + GL
Sbjct: 128 PLDGSYVTIDPSVSDWSNYF-----KCGLHVAHSFLKKLAPERFASAPLAGLQ------- 175
Query: 119 WLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALL 159
V D+P G+GL SSAAF ++ A++
Sbjct: 176 -------------VFCEGDVPTGSGLSSSAAFICAVALAVV 203
>pdb|2HVG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Plasmodium Vivax
pdb|2HVG|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Plasmodium Vivax
Length = 482
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 114 ATAFLWLYTSIIGFKPATVVVT--SDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKN- 170
A AF L++S + P + + SD + +GSS A+C+ ++L LN + +D+
Sbjct: 334 ANAFFKLFSSKL---PTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSVLKGLNKIDIDRRN 390
Query: 171 -----HQGWLTYGE 179
+Q W T E
Sbjct: 391 LEEELNQNWSTLAE 404
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 93/253 (36%), Gaps = 52/253 (20%)
Query: 5 ARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRF-----PXXXXXXXTLKLVLKDMEL 59
AR+PG++ L GEH + + ID+ +++ P K + +L
Sbjct: 42 ARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLTNADPKFAQRKFDL 101
Query: 60 NFSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLW 119
S I ++S + F C + V S + PE +
Sbjct: 102 PLDGSYMAIDPSVSEWSNYF-----KCGLHVAHSYLKKI----APER------------F 140
Query: 120 LYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGE 179
T ++G A + SD+P G GL SSA C AA L ++ + ++ KN +
Sbjct: 141 NNTPLVG---AQIFCQSDIPTGGGL-SSAFTC----AAALATIRA-NMGKN----FDISK 187
Query: 180 SDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGN-----IIKFRSG-NMTCIK----SNMP 229
DL + A E + G+D S YG ++FR T K N
Sbjct: 188 KDLTRITAVA---EHYVGVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHE 244
Query: 230 LKMLITNTKVGRN 242
+ +I NT V N
Sbjct: 245 ISFVIANTLVKSN 257
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 93/253 (36%), Gaps = 52/253 (20%)
Query: 5 ARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRF-----PXXXXXXXTLKLVLKDMEL 59
AR+PG++ L GEH + + ID+ +++ P K + +L
Sbjct: 27 ARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLTNADPKFAQRKFDL 86
Query: 60 NFSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLW 119
S I ++S + F C + V S + PE +
Sbjct: 87 PLDGSYMAIDPSVSEWSNYF-----KCGLHVAHSYLKKI----APER------------F 125
Query: 120 LYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGE 179
T ++G A + SD+P G GL SSA C AA L ++ + ++ KN +
Sbjct: 126 NNTPLVG---AQIFCQSDIPTGGGL-SSAFTC----AAALATIRA-NMGKN----FDISK 172
Query: 180 SDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGN-----IIKFRSG-NMTCIK----SNMP 229
DL + A E + G+D S YG ++FR T K N
Sbjct: 173 KDLTRITAVA---EHYVGVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHE 229
Query: 230 LKMLITNTKVGRN 242
+ +I NT V N
Sbjct: 230 ISFVIANTLVKSN 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,473,738
Number of Sequences: 62578
Number of extensions: 339056
Number of successful extensions: 884
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 35
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)