Query 045151
Match_columns 387
No_of_seqs 209 out of 1821
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 10:21:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02677 mevalonate kinase 100.0 1.6E-62 3.4E-67 473.5 41.9 387 1-387 1-387 (387)
2 KOG1511 Mevalonate kinase MVK/ 100.0 4.7E-59 1E-63 423.7 37.2 368 4-384 6-382 (397)
3 COG0153 GalK Galactokinase [Ca 100.0 1.2E-53 2.5E-58 399.2 27.5 324 2-382 23-389 (390)
4 COG1577 ERG12 Mevalonate kinas 100.0 8.9E-52 1.9E-56 384.1 31.3 294 4-367 2-297 (307)
5 TIGR01220 Pmev_kin_Gr_pos phos 100.0 6.3E-51 1.4E-55 393.4 34.1 321 3-378 1-358 (358)
6 PRK00555 galactokinase; Provis 100.0 4.1E-50 8.8E-55 388.1 28.9 320 1-382 1-362 (363)
7 PRK05101 galactokinase; Provis 100.0 4.6E-49 9.9E-54 383.6 29.9 319 3-381 21-381 (382)
8 PRK05322 galactokinase; Provis 100.0 6.3E-49 1.4E-53 382.9 28.3 318 3-381 20-386 (387)
9 PTZ00290 galactokinase; Provis 100.0 1.8E-48 4E-53 382.4 30.7 342 3-382 38-456 (468)
10 PLN02865 galactokinase 100.0 1.5E-48 3.3E-53 379.5 25.5 331 3-381 31-422 (423)
11 TIGR00549 mevalon_kin mevalona 100.0 1.5E-47 3.3E-52 358.8 28.6 271 7-345 1-273 (273)
12 TIGR00131 gal_kin galactokinas 100.0 2.6E-47 5.6E-52 373.0 25.8 318 3-380 18-384 (386)
13 PRK03926 mevalonate kinase; Pr 100.0 1.5E-45 3.2E-50 350.1 33.3 299 2-383 1-300 (302)
14 PLN02521 galactokinase 100.0 3.1E-46 6.7E-51 371.1 27.9 330 3-382 49-494 (497)
15 PRK03817 galactokinase; Provis 100.0 2.8E-44 6.2E-49 347.7 29.6 314 4-382 2-350 (351)
16 PTZ00298 mevalonate kinase; Pr 100.0 6.7E-44 1.5E-48 341.4 29.2 303 4-374 12-321 (328)
17 PRK13412 fkp bifunctional fuco 100.0 1.6E-43 3.5E-48 368.4 33.3 334 3-383 610-973 (974)
18 COG2605 Predicted kinase relat 100.0 5E-38 1.1E-42 280.5 28.7 310 2-383 1-331 (333)
19 TIGR01219 Pmev_kin_ERG8 phosph 100.0 3.6E-37 7.7E-42 300.7 33.3 359 5-384 2-451 (454)
20 PRK00128 ipk 4-diphosphocytidy 100.0 3E-30 6.5E-35 243.1 25.9 274 1-376 1-283 (286)
21 PRK02534 4-diphosphocytidyl-2- 100.0 5.5E-30 1.2E-34 244.0 26.0 292 2-382 3-311 (312)
22 KOG0631 Galactokinase [Carbohy 100.0 2E-29 4.3E-34 240.2 18.2 323 2-365 39-461 (489)
23 TIGR00154 ispE 4-diphosphocyti 100.0 8E-27 1.7E-31 219.7 27.3 260 4-363 3-272 (293)
24 PLN02451 homoserine kinase 100.0 9.3E-27 2E-31 225.0 25.5 225 127-384 132-367 (370)
25 PRK03188 4-diphosphocytidyl-2- 99.9 6.1E-25 1.3E-29 208.3 24.7 285 4-384 2-297 (300)
26 COG0083 ThrB Homoserine kinase 99.9 2.9E-24 6.3E-29 198.0 25.9 285 1-382 2-297 (299)
27 PRK01123 shikimate kinase; Pro 99.9 2.3E-24 5E-29 202.3 22.9 204 128-382 74-282 (282)
28 PRK01212 homoserine kinase; Pr 99.9 7.1E-24 1.5E-28 201.3 23.9 216 128-382 80-301 (301)
29 TIGR00144 beta_RFAP_syn beta-R 99.9 9.9E-23 2.1E-27 194.1 28.1 292 4-382 2-324 (324)
30 TIGR01920 Shik_kin_archae shik 99.9 2.3E-23 4.9E-28 193.0 23.1 191 128-371 63-260 (261)
31 PRK14611 4-diphosphocytidyl-2- 99.9 1.9E-23 4.1E-28 195.4 22.0 266 1-374 1-274 (275)
32 PRK14614 4-diphosphocytidyl-2- 99.9 2E-22 4.2E-27 188.9 28.0 266 2-372 3-277 (280)
33 TIGR00191 thrB homoserine kina 99.9 3.2E-23 7E-28 196.6 21.8 214 128-382 79-302 (302)
34 PTZ00299 homoserine kinase; Pr 99.9 3E-23 6.5E-28 197.4 21.3 217 128-382 81-322 (336)
35 PRK14608 4-diphosphocytidyl-2- 99.9 1.8E-22 4E-27 189.8 25.5 263 1-365 5-278 (290)
36 PRK14616 4-diphosphocytidyl-2- 99.9 5.1E-22 1.1E-26 186.9 27.6 275 1-381 2-285 (287)
37 PRK14615 4-diphosphocytidyl-2- 99.9 9.5E-22 2.1E-26 185.4 25.2 277 3-372 7-294 (296)
38 PRK14612 4-diphosphocytidyl-2- 99.9 3E-21 6.6E-26 180.7 24.6 259 1-368 1-267 (276)
39 PRK00343 ipk 4-diphosphocytidy 99.9 4.4E-21 9.5E-26 178.6 24.3 248 2-364 6-261 (271)
40 PRK14609 4-diphosphocytidyl-2- 99.9 1.7E-20 3.7E-25 174.5 23.1 241 4-348 2-252 (269)
41 COG3890 ERG8 Phosphomevalonate 99.9 6.2E-20 1.3E-24 162.9 25.2 214 141-385 107-336 (337)
42 KOG4519 Phosphomevalonate kina 99.9 1.7E-19 3.7E-24 163.7 27.6 373 1-384 1-452 (459)
43 PRK14613 4-diphosphocytidyl-2- 99.9 3.2E-19 7E-24 168.2 25.7 274 6-364 2-285 (297)
44 COG1947 IspE 4-diphosphocytidy 99.8 9.1E-19 2E-23 160.7 25.1 271 1-374 2-283 (289)
45 PRK14610 4-diphosphocytidyl-2- 99.8 2.9E-18 6.2E-23 160.8 26.0 263 2-373 3-280 (283)
46 COG1685 Archaeal shikimate kin 99.8 1.1E-16 2.4E-21 142.8 23.3 201 129-382 70-276 (278)
47 PRK00650 4-diphosphocytidyl-2- 99.8 6.8E-17 1.5E-21 150.1 23.0 231 4-349 2-243 (288)
48 PRK05905 hypothetical protein; 99.8 5.4E-17 1.2E-21 148.8 20.9 240 4-347 2-254 (258)
49 COG1907 Predicted archaeal sug 99.7 5.1E-16 1.1E-20 139.8 23.0 222 128-382 70-311 (312)
50 PRK04181 4-diphosphocytidyl-2- 99.7 5.7E-15 1.2E-19 136.0 21.1 99 128-250 85-186 (257)
51 KOG4644 L-fucose kinase [Carbo 99.6 9.5E-14 2.1E-18 133.0 23.3 232 127-382 689-943 (948)
52 TIGR01240 mevDPdecarb diphosph 99.6 5.4E-13 1.2E-17 125.8 22.8 194 128-360 84-302 (305)
53 PF00288 GHMP_kinases_N: GHMP 99.5 8.5E-15 1.8E-19 106.9 4.5 67 131-212 1-67 (67)
54 COG4542 PduX Protein involved 99.5 7E-12 1.5E-16 110.9 19.8 193 127-362 81-277 (293)
55 COG1829 Predicted archaeal kin 99.4 1.1E-10 2.4E-15 105.1 23.0 240 1-348 1-254 (283)
56 PF10509 GalKase_gal_bdg: Gala 99.4 2.3E-13 4.9E-18 92.8 4.1 38 3-40 14-51 (52)
57 PLN02407 diphosphomevalonate d 99.3 2.6E-10 5.6E-15 107.5 17.8 183 131-352 105-320 (343)
58 PF08544 GHMP_kinases_C: GHMP 99.2 2.8E-11 6E-16 92.5 7.7 73 291-366 8-83 (85)
59 COG3407 MVD1 Mevalonate pyroph 99.2 3.1E-09 6.7E-14 99.5 22.2 197 128-366 89-308 (329)
60 KOG1537 Homoserine kinase [Ami 99.2 3E-10 6.6E-15 100.9 12.6 219 130-382 95-353 (355)
61 KOG2833 Mevalonate pyrophospha 98.6 8.3E-07 1.8E-11 81.3 14.5 190 129-362 105-329 (395)
62 PF03460 NIR_SIR_ferr: Nitrite 42.7 23 0.00051 25.1 2.4 47 312-364 21-68 (69)
63 COG2221 DsrA Dissimilatory sul 21.2 1.4E+02 0.0031 28.3 4.3 50 312-367 42-92 (317)
64 PRK13494 chemoreceptor glutami 20.9 3.1E+02 0.0067 23.5 5.9 51 329-382 93-144 (163)
65 COG2090 Uncharacterized protei 20.8 2.3E+02 0.0049 23.4 4.8 34 339-372 35-68 (141)
66 PF11582 DUF3240: Protein of u 20.7 87 0.0019 24.4 2.4 38 342-379 63-100 (102)
67 PRK13495 chemoreceptor glutami 20.4 3.3E+02 0.0071 23.2 6.0 51 329-382 84-135 (159)
68 COG0041 PurE Phosphoribosylcar 20.3 2.1E+02 0.0045 24.3 4.6 25 314-338 43-67 (162)
No 1
>PLN02677 mevalonate kinase
Probab=100.00 E-value=1.6e-62 Score=473.51 Aligned_cols=387 Identities=77% Similarity=1.201 Sum_probs=315.0
Q ss_pred CceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCC
Q 045151 1 MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFP 80 (387)
Q Consensus 1 ~~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (387)
|.+.++|||||+|+|||+||+|++||++|||+|+++.++++..+...+.+++.++|++..++|+.+++++..........
T Consensus 1 ~~i~v~apgk~~l~Geh~~~~g~~a~~~ai~~~~~~~~~~~~~~~~~~~i~~~~~di~~~~~~~~~~l~~~~~~~~~~~~ 80 (387)
T PLN02677 1 MEVKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQLKDLGLEFSWPLARIKEALPDLGTPCP 80 (387)
T ss_pred CceEEeCCccEEEeeeeeeecCCeeeeeEeeceEEEEEEecCCCCCCCeEEEEcCCCCceEEechHhhhhhhcccccccc
Confidence 67899999999999999999999999999999999999875211245678889999999999998887654221111111
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 045151 81 STPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLG 160 (387)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~ 160 (387)
..|.....+....+..++.+...++...+...++-+|||++..+.+..++++.|+|+||.|+|||||||++||++.|++.
T Consensus 81 ~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~flyl~~~~~~~~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~ 160 (387)
T PLN02677 81 STPTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWLYTSILGFNPATVVVTSELPLGSGLGSSAAFCVALSAALLA 160 (387)
T ss_pred ccccccCHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHhccCCCeEEEEEccCCCCCCccHHHHHHHHHHHHHHH
Confidence 12323445555666677765433432222234678999999988877889999999999999999999999999999999
Q ss_pred hcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCCCcccccCCCCceEEEEEeCCC
Q 045151 161 SLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVG 240 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~~~~~l~~~~~~~~ll~~t~~~ 240 (387)
+++..+.+....++..+++.++++|+++|+.+|+.+||++||+|+++++|||++.|++++.++++.+.+++++|+||+++
T Consensus 161 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGiD~a~s~~Gg~I~f~~~~~~~l~~~~~l~llv~dTgv~ 240 (387)
T PLN02677 161 ASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGIDNTVSTYGNMIKFKSGELTRLQSNMPLKMLITNTRVG 240 (387)
T ss_pred HhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCchhHHHHhcCCeEEEcCCCceecCCCCCceEEEEECCCC
Confidence 99831110000011124555677899999999999999999999999999999999988888888777899999999999
Q ss_pred CChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 045151 241 RNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIETV 320 (387)
Q Consensus 241 ~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~p~l~~l 320 (387)
++|+++|+.|++++++.|+.++.++++++++++++.++++....+....++|++.|+++|+.||.+|+.+|+++|.++.+
T Consensus 241 ~sT~~lV~~V~~~~~~~p~~~~~il~~~~~i~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~LGVS~~~le~i 320 (387)
T PLN02677 241 RNTKALVAGVSERALRHPDAMKSVFNAVDSISEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQCMGVSHSSIETV 320 (387)
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 99999999999999889998889999999999999999986322211123578999999999999999999999999999
Q ss_pred HHHHhhcCCcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecCCceEEEeccCC
Q 045151 321 LRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEVCFGGLS 387 (387)
Q Consensus 321 ~~~a~~~g~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~G~~v~~~~~~ 387 (387)
+++++++++++|+||||+|||+++|++++..++.++++.++|+++|+++|.++++.+||+|.-.+.|
T Consensus 321 v~~a~~~~~~AKlTGAGgGGC~IaL~~~~~~~~~~~~l~~~l~~~G~~~~~~~~g~~Gv~~~~~~~~ 387 (387)
T PLN02677 321 LRTTLKYKLVSKLTGAGGGGCVLTLLPTLLSGTVVDKVIAELESSGFQCFTAGIGGNGVQICYGGCS 387 (387)
T ss_pred HHHHHHcCCccccccCCCCCEEEEEcccccchhHHHHHHHHHHHCCCeEEEEEeCCCceEEEecccC
Confidence 9999998999999999999999999987555667889999999999999999999999999876654
No 2
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=100.00 E-value=4.7e-59 Score=423.75 Aligned_cols=368 Identities=44% Similarity=0.690 Sum_probs=299.2
Q ss_pred EEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCC--CCCC
Q 045151 4 KARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGS--PFPS 81 (387)
Q Consensus 4 ~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~ 81 (387)
.++|||||+|||||+|+||.+|++++||+|+|+.+.+. .++++.+..+|++.+..|.+.++...++.... +..+
T Consensus 6 ~vsaPGKvILfGEHAVVyg~~AlAaai~LrTyl~l~~s----an~~i~l~l~di~~~~~w~l~~~~~~l~~~~~~~~~~q 81 (397)
T KOG1511|consen 6 LVSAPGKVILFGEHAVVYGRTALAAAIDLRTYLRLQTS----ANDRILLQLPDISIEKAWSLADFNGALPEQRSTYESVQ 81 (397)
T ss_pred eecCCccEEEeccceeEECCceeEEEeecceeEEEEec----CCCeEEEecccCCceEEEEhhhhhhhhhhhhhhhhccC
Confidence 79999999999999999999999999999999999664 56788899999999999998886544332211 1222
Q ss_pred CCCCCc-HHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhh-CccC----eEEEEEecCCCCCCCChhHHHHHHHH
Q 045151 82 TPTTCS-MEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSII-GFKP----ATVVVTSDLPLGAGLGSSAAFCVSLT 155 (387)
Q Consensus 82 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~----~~i~i~s~iP~g~GLGSSaA~~va~~ 155 (387)
.|.... .+..+.+..++...... +.....-+|+|+++..+ ..+| +++.++|++|.|+|||||||++|+++
T Consensus 82 ~p~~~~~~e~~k~l~~l~~~~~~~----~~~~a~~~~lYlf~~l~~~~~g~lp~~~v~v~SelP~GaGLGSSAa~sv~lA 157 (397)
T KOG1511|consen 82 TPASEVRVELLKQLGGLLENQEKV----KEHLAGLSFLYLFLGLCLRAPGTLPALTVVVDSELPLGAGLGSSAAISVALA 157 (397)
T ss_pred CcchhhhHHHHHHhhhhhhcchhh----hHHHHHHHHHHHHHHhhhcccCCCcceEEEEeccCCCcCCcchhHHHHHHHH
Confidence 332211 22233333333332211 11223446777766553 2334 89999999999999999999999999
Q ss_pred HHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCC-CcccccCCCCceEEE
Q 045151 156 AALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSG-NMTCIKSNMPLKMLI 234 (387)
Q Consensus 156 ~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~-~~~~l~~~~~~~~ll 234 (387)
+++..+.|..+.| . ++..+++.+++.|-+||++.|+.+||+|||+|++.|+|||.+.|+.+ ..+.+...+++++++
T Consensus 158 tall~~~g~i~~p--~-~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGiDnaV~t~Gg~i~f~kg~~~~~Lk~~~~L~ill 234 (397)
T KOG1511|consen 158 TALLRLAGLIPPP--G-SNLSLAENDLALINKWAFEGEKCIHGTPSGIDNAVCTYGGLISFKKGVEIESLKHLPPLRILL 234 (397)
T ss_pred HHHHHHcccCCCC--c-chhccccchHHHHHHHHhccceeecCCCcccchhhhccCceEEeecCccceecccCCCceEEE
Confidence 9999999875211 1 34445667788899999999999999999999999999999999988 577777778999999
Q ss_pred EEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCC
Q 045151 235 TNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSH 314 (387)
Q Consensus 235 ~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~ 314 (387)
+||.++|+|+++|+.++.+.+++|+.+++++++|.+++.++..++.+.. ++....+ .+.|.++|..||.+|.++|+++
T Consensus 235 tnTrv~RnTk~lVa~Vr~~~~kfPevi~~i~~aid~is~ea~~il~~e~-~~~~~~~-Eq~L~eLi~iNq~LL~alGVsH 312 (397)
T KOG1511|consen 235 TNTRVPRNTKALVAGVRELLEKFPEVIKAIFDAIDEISLEAVWILQREN-DEFSSPK-EQKLEELIRINQDLLDALGVSH 312 (397)
T ss_pred EccccCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccc-ccCCCcH-HHHHHHHHHHhHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999999998521 1111112 3359999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecCCceEEEec
Q 045151 315 SSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEVCFG 384 (387)
Q Consensus 315 p~l~~l~~~a~~~g~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~G~~v~~~ 384 (387)
|.+|.++...++.|+.+||||||+|||+++|.+++...+.++.+.+.++.+||.+|.+.+++.|++|...
T Consensus 313 ~~le~v~~~t~k~gi~sKLTGAGgGGc~itlL~~~~~qe~i~~~ke~L~s~gf~v~~t~lGG~G~~v~s~ 382 (397)
T KOG1511|consen 313 PSLELVCTTTRKLGIHSKLTGAGGGGCVITLLKPGTEQEQIDKWKEELESHGFEVFETELGGPGVSVHSA 382 (397)
T ss_pred HHHHHHHHHHHHhCcceecccCCCCceEEEEECCCCchHHHHHHHHHHHhcCcceeeccCCCCceEEEec
Confidence 9999999999999999999999999999999999887889999999999999999999999999999754
No 3
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-53 Score=399.18 Aligned_cols=324 Identities=24% Similarity=0.349 Sum_probs=250.2
Q ss_pred ceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCcee-e-eehhhHHhhhccCCCCC
Q 045151 2 EVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNF-S-WSVTRIKATLSHLGSPF 79 (387)
Q Consensus 2 ~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~-~-~~l~~~~~~~~~~~~~~ 79 (387)
...++|||||+|+|||+||+|++++|+|||.+|++.++++ ++..|++++.+++... . +..++...
T Consensus 23 ~~~~~aPGRvNLIGEHtDYn~G~VlP~Ain~~t~v~v~~r----~d~~v~l~s~n~~~~~~~~~~~~d~~~--------- 89 (390)
T COG0153 23 TVTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKR----DDGKVRLYSANFGNAGDIFFLLLDIAK--------- 89 (390)
T ss_pred ceEecCCceEEeeccceeccCceEEEEEeecceEEEEEEc----cCceEEEEeCCCccccceeecchhhcc---------
Confidence 3578999999999999999999999999999999999986 6778999999886432 2 22222211
Q ss_pred CCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHH
Q 045151 80 PSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALL 159 (387)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~ 159 (387)
....+|.+|+++++..++ .+++...|+++.+.|+||.|+|||||||+.|+++.++.
T Consensus 90 -----~~~~~W~nYvkgvi~~l~-------------------~~g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~ 145 (390)
T COG0153 90 -----EKIDDWANYVKGVIKALQ-------------------KRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQ 145 (390)
T ss_pred -----cccchhhhhHHHHHHHHH-------------------hcCCCcCCeeEEEecCCCCCCCcCchHHHHHHHHHHHH
Confidence 023689999997665432 23456779999999999999999999999999999999
Q ss_pred HhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cceeEeecc-----eEEEeCCCcccccCCCC-ceE
Q 045151 160 GSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYGN-----IIKFRSGNMTCIKSNMP-LKM 232 (387)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~~~~~~Gg-----~i~~~~~~~~~l~~~~~-~~~ 232 (387)
++++++ +++ .+++++++.+|+.|.|.+||+ ||+++.+|. +++|++.+++++|+|.. +.+
T Consensus 146 ~l~~~~-----------~~k---~~la~i~q~AEn~fvGvn~G~mDQ~~s~~G~~~~al~ld~~~l~~~~~~~p~~~~~i 211 (390)
T COG0153 146 RLFNLP-----------LDK---AELAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRTLEYEPVPFPVGGVSI 211 (390)
T ss_pred HHhCCC-----------CCH---HHHHHHHHHHHhhccCCcCchHHHHHHHhCCCCcEEEEEcccCceEEeccCccceEE
Confidence 999875 544 678999999999999999997 999999994 46777778899998866 999
Q ss_pred EEEEeCCCCChHHHHHHHHHHHhhChhHHHHH----------------------------HHHHHHHHHHHHHHHcCCCC
Q 045151 233 LITNTKVGRNTRALVAGVSERSMRHPDAMSSV----------------------------FNAVDSISKELSTIIESPTP 284 (387)
Q Consensus 233 ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~----------------------------~~~i~~i~~~~~~~l~~~~~ 284 (387)
+|++|++++.+.. .+++.|+.+|.++++.+ .++.+++..+..+.++..
T Consensus 212 vI~ns~vkr~la~--seYn~Rr~ece~A~~~l~~~~~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a~-- 287 (390)
T COG0153 212 VIVNSNVKRELAD--SEYNERRAECEEAAEFLGVSIKSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAA-- 287 (390)
T ss_pred EEecCCCccccch--hHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHhhhhhcccchHHHHHHHHHHhHHHHHHHHH--
Confidence 9999999886532 34455554444332211 111122222222221110
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHhhc-C-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 045151 285 DDLSITEKEERLEELMEMNQGLLQ-CMGVSHSSIETVLRTTLKF-K-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTE 361 (387)
Q Consensus 285 ~~~~~~~d~~~l~~~~~~~~~~l~-~~~~s~p~l~~l~~~a~~~-g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~ 361 (387)
....++|+..||++|+++|.+|+ .+.+|+|++|.+++++... | +|+||||||||||+++|++++.++++.+.+.+.
T Consensus 288 -~Al~~~dl~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~~~G~~GaRmTGaGfGGc~IaLv~~~~v~~~~e~v~~~ 366 (390)
T COG0153 288 -KALRSGDLTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEE 366 (390)
T ss_pred -HHHHcCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHcCCcccceecCCCCCceEEEEechhhHHHHHHHHHHh
Confidence 01235789999999999999999 8999999999999999866 6 999999999999999999999999999999966
Q ss_pred HHHC-Cc--eEEEeeecCCceEEE
Q 045151 362 LETC-GF--QCLIAGIGGTGVEVC 382 (387)
Q Consensus 362 ~~~~-g~--~~~~~~~~~~G~~v~ 382 (387)
|.+. |+ .+|+++++ +|+++.
T Consensus 367 y~~~~g~k~~~yv~~~~-~G~~~~ 389 (390)
T COG0153 367 YEKVTGLKAAFYVVEAS-QGAGVC 389 (390)
T ss_pred HHhhcCccccEEEEecc-CCcccc
Confidence 6554 54 46777665 688754
No 4
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=8.9e-52 Score=384.12 Aligned_cols=294 Identities=33% Similarity=0.544 Sum_probs=245.0
Q ss_pred EEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCCCCC
Q 045151 4 KARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPSTP 83 (387)
Q Consensus 4 ~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 83 (387)
.++||||++|||||+|+||+|||++||++|+++.++.+ ++..+.+.+.++... .+ +. .+
T Consensus 2 ~~~aPgKliL~GEHAVVyG~pAI~~aI~~~~~v~~~~s----~~~~~~i~~~~~~~~---~~---~~-----------~~ 60 (307)
T COG1577 2 SVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISES----DSNKIVIESSDLKSS---TL---ER-----------DE 60 (307)
T ss_pred cccccccEEEEecceeeeCCchhheeeeeeEEEEEEec----CCCcEEEeccCCCCc---cc---cc-----------cc
Confidence 57999999999999999999999999999999999875 555677766655322 00 00 00
Q ss_pred CCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcC
Q 045151 84 TTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLN 163 (387)
Q Consensus 84 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~ 163 (387)
. ..|+..+++.+. .|+ ......|++++|+|+||+++|||||||+.|+++.|++.++|
T Consensus 61 --~----~~~~~~~v~~~~-------------e~~----~~~~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g 117 (307)
T COG1577 61 --D----EGYIQAAVRLAS-------------ELL----NQSSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFG 117 (307)
T ss_pred --c----chHHHHHHHHHH-------------HHh----cccCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcC
Confidence 0 023333332210 011 00236789999999999999999999999999999999999
Q ss_pred CccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCC-CcccccCCCCceEEEEEeCCCCC
Q 045151 164 SVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSG-NMTCIKSNMPLKMLITNTKVGRN 242 (387)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~-~~~~l~~~~~~~~ll~~t~~~~~ 242 (387)
.. +++ ++++++|+.+|..+||++||+|.++++|||++.|+++ +++++.++..-.|++.|++++.+
T Consensus 118 ~~-----------ls~---~~l~~la~~~e~~vqG~~Sg~D~a~~~~gg~v~~~~~~~~~~l~~~~~~~~~I~~tg~~~s 183 (307)
T COG1577 118 VE-----------LSP---EELAKLANKVELIVQGKASGIDIATITYGGLVAFKKGFDFEKLEIELLGTLVIGDTGVPGS 183 (307)
T ss_pred CC-----------CCH---HHHHHHHHHHHHHHcCCCCcccceEEEeCCEEEEecCCCccccccccCCeEEEEEcCCcCc
Confidence 76 655 5678999999999999999999999999999999874 56666654333789999999999
Q ss_pred hHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 045151 243 TRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIETVLR 322 (387)
Q Consensus 243 T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~p~l~~l~~ 322 (387)
|+++++.+++++++.|+.+.+++++++.+++++..+++. +|.+.|+++|+.||.+|..+++++|+++++++
T Consensus 184 T~e~V~~V~~l~~~~~~~~~~~~~~ig~~~~~a~~al~~---------~d~e~lgelm~~nq~LL~~LgVs~~~L~~lv~ 254 (307)
T COG1577 184 TKELVAGVAKLLEEEPEVIDPILDAIGELVQEAEAALQT---------GDFEELGELMNINQGLLKALGVSTPELDELVE 254 (307)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHHHHhcCcCcHHHHHHHH
Confidence 999999999988888888899999999999999999987 78999999999999999999999999999999
Q ss_pred HHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCc
Q 045151 323 TTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGF 367 (387)
Q Consensus 323 ~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~ 367 (387)
.++++| .|+|+||||+|||+++|+++. +..+.+...|.++|.
T Consensus 255 ~a~~~Ga~gaKlTGAGgGGc~IaL~~~~---~~~~~l~~~~~~~~i 297 (307)
T COG1577 255 AARSLGALGAKLTGAGGGGCIIALAKNE---EIAETLSNRLEKAGI 297 (307)
T ss_pred HHHhcCccccccccCCCCceEEEEeccc---hHHHHHHHHHHhcCc
Confidence 999999 899999999999999999982 336788888888874
No 5
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=100.00 E-value=6.3e-51 Score=393.40 Aligned_cols=321 Identities=22% Similarity=0.290 Sum_probs=260.9
Q ss_pred eEEEcCceEEEEeccceee-CCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCc-eeeeehhhHHhhhccCCCCCC
Q 045151 3 VKARAPGKIILAGEHAVVH-GSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMEL-NFSWSVTRIKATLSHLGSPFP 80 (387)
Q Consensus 3 ~~~~APgkv~L~GEh~~~~-g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 80 (387)
++++|||||+|+|||+||| |.+||++|||+|++++++++ ++..++|.+.++.. .+.|..+.......
T Consensus 1 ~~~~APGKl~L~GEhavv~~G~pAl~~aI~~~~~v~i~~~----~~~~~~i~s~~~~~~~~~~~~~~~~~~~~------- 69 (358)
T TIGR01220 1 IVVHAPGKLFVAGEYAVVEPGNPAILVAVDRFVTVTVEDA----DGAADVIISSDLGPQPVGWRRHDGRLVVR------- 69 (358)
T ss_pred CeeecceeEEEeeeEEEecCCCeEEEEEEcCcEEEEEEeC----CCCceEEEecCCCCCceEEEecCCceeec-------
Confidence 4689999999999999999 88999999999999999875 44567888877743 23343221100000
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCC----CCCChhHHHHHHHHH
Q 045151 81 STPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLG----AGLGSSAAFCVSLTA 156 (387)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g----~GLGSSaA~~va~~~ 156 (387)
.+ ...+|.+|++.+++.+. .++. ......+++++.|+|++|.+ +|||||||++||++.
T Consensus 70 -~~--~~~~~~~~v~~~i~~~~-------------~~~~--~~~~~~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~ 131 (358)
T TIGR01220 70 -DP--DARSALAYVVSAIETVE-------------RYAG--ERNQKLPALHLSVSSRLDEADGRKYGLGSSGAVTVATVK 131 (358)
T ss_pred -cc--ccccchHHHHHHHHHHH-------------HHHH--hcCCCCCceEEEEecCCCCcCCCCCCccHHHHHHHHHHH
Confidence 00 12357888887665321 1110 01123468999999999984 799999999999999
Q ss_pred HHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCCC----------------
Q 045151 157 ALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGN---------------- 220 (387)
Q Consensus 157 Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~~---------------- 220 (387)
|++.+++.+ +++ ++++++|+.+|+.+||+++|.|+++++|||++.|++.+
T Consensus 132 Al~~~~~~~-----------l~~---~~l~~lA~~~E~~~~g~~sg~D~~a~~~GG~i~~~~~~~~~~~~~~~~~~~~~~ 197 (358)
T TIGR01220 132 ALNAFYDLE-----------LSN---DEIFKLAMLATAELQPKGSCGDIAASTYGGWIAYSTFDHDWVLQLARRVGVDRT 197 (358)
T ss_pred HHHHHhCCC-----------CCH---HHHHHHHHHHHhhhCCCCCcchhhhhhhCCEEEEecCCHHHHhhhhhccchhhh
Confidence 999999975 554 67799999999999999999999999999998876432
Q ss_pred ---------cccccCCCCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchH
Q 045151 221 ---------MTCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITE 291 (387)
Q Consensus 221 ---------~~~l~~~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~ 291 (387)
+++++.++++++++++|+++++|+++++.+.+++++.|+.++.+++++.++++++.++|+. +
T Consensus 198 ~~~~w~~~~~~~l~~~~~~~l~v~~tg~~~~T~~~v~~V~~~~~~~~~~~~~~l~~~~~i~~~~~~al~~---------~ 268 (358)
T TIGR01220 198 LKAPWPGLSIRPLPAPKGLTLLIGWTGSPASTASLVSDVHRRKWRGSASYQRFLETSTDCVESAITAFET---------G 268 (358)
T ss_pred hccCCCccceeECCCCCCCEEEEEeCCCCcCcHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHh---------C
Confidence 3456666789999999999999999999998887777777778899999999999999987 7
Q ss_pred HHHHHHHHHHHHHHHHhhc------CCCCHHHHHHHHHHhhcCCcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHC
Q 045151 292 KEERLEELMEMNQGLLQCM------GVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETC 365 (387)
Q Consensus 292 d~~~l~~~~~~~~~~l~~~------~~s~p~l~~l~~~a~~~g~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~ 365 (387)
|++.|+++|+++|.+|+.+ ++++|+++++++.+++.|.++|+||||+|||+++|++++ +..+.+.++|+++
T Consensus 269 d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~~ga~aKlsGAGgGg~~ial~~~~---~~~~~~~~~~~~~ 345 (358)
T TIGR01220 269 DITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEAYGGAAKPSGAGGGDCGIAILDAE---ADITHVRQRWETA 345 (358)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhhcCceecCCCCCCcCEEEEEeCCc---hhHHHHHHHHHHC
Confidence 8999999999999999976 899999999999999988899999999999999999874 4578899999999
Q ss_pred CceEEEeeecCCc
Q 045151 366 GFQCLIAGIGGTG 378 (387)
Q Consensus 366 g~~~~~~~~~~~G 378 (387)
|+.++.+++...|
T Consensus 346 G~~~l~~~~~~~~ 358 (358)
T TIGR01220 346 GILPLPLTPYLEG 358 (358)
T ss_pred CCeEeeeeccCCC
Confidence 9999988887655
No 6
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=4.1e-50 Score=388.12 Aligned_cols=320 Identities=17% Similarity=0.228 Sum_probs=243.9
Q ss_pred CceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCC
Q 045151 1 MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFP 80 (387)
Q Consensus 1 ~~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (387)
|+++++|||||+|+|||+||+|++++++|||+++++.++++ +++.+++.+.+++..+.++.+..+
T Consensus 1 m~~~~~APGRv~LiGEH~dy~~g~vl~~Ai~~~~~v~~~~~----~~~~i~i~s~~~~~~~~~~~~~~~----------- 65 (363)
T PRK00555 1 MTVRYAAPGRINLIGEHTDYNLGFALPIALPQRTVVTFTPE----HTDAITASSDRADGSARIPLDTTP----------- 65 (363)
T ss_pred CCEEEEcCceEEeecccccCCCCeEEeEEeeccEEEEEEEC----CCCEEEEEECCCCCceEEecCCCC-----------
Confidence 78899999999999999999999999999999999999986 667899988887654554433211
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 045151 81 STPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLG 160 (387)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~ 160 (387)
.....|.+|+++++..+.. ......|+++.|+|+||+++|||||||++||++.|++.
T Consensus 66 ----~~~~~w~~y~~gv~~~l~~-------------------~g~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~ 122 (363)
T PRK00555 66 ----GQVTGWAAYAAGVIWALRG-------------------AGHPVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGA 122 (363)
T ss_pred ----CCCcchHHHHHHHHHHHHH-------------------cCCCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHH
Confidence 0235799999987654320 11234689999999999999999999999999999999
Q ss_pred hcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cceeEeecce---E--EEeCCCcccccCCC---Cce
Q 045151 161 SLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYGNI---I--KFRSGNMTCIKSNM---PLK 231 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~~~~~~Gg~---i--~~~~~~~~~l~~~~---~~~ 231 (387)
+++.+ +++ ++++++|+.+|+.++|.+||. ||+++++||. + +|++..++++|+++ .+.
T Consensus 123 ~~~~~-----------~~~---~~la~~a~~aE~~~~G~~~G~~Dq~as~~G~~~~~~~~d~~~~~~~~v~~~~~~~~~~ 188 (363)
T PRK00555 123 ATGTR-----------IDR---LEQARLAQRAENEYVGAPTGLLDQLAALFGAPKTALLIDFRDLTVRPVAFDPDAAGVV 188 (363)
T ss_pred HhCCC-----------CCH---HHHHHHHHHHHHhhCCCCCChhHHHHHHhCCCCeEEEEEcCCCcEEEeccCCCcCceE
Confidence 99975 544 567999999999999999995 9999999973 4 34444566777653 357
Q ss_pred EEEEEeCCCCChH--------HHHHHHHHHHh------hChhHHH--------HHHHHHH------HHHHHHHHHHcCCC
Q 045151 232 MLITNTKVGRNTR--------ALVAGVSERSM------RHPDAMS--------SVFNAVD------SISKELSTIIESPT 283 (387)
Q Consensus 232 ~ll~~t~~~~~T~--------~~~~~~~~~~~------~~~~~~~--------~~~~~i~------~i~~~~~~~l~~~~ 283 (387)
|++++|+.++.|. +..+.+.+... ..++.+. ..++++. ..+..+..+|+.
T Consensus 189 lvv~~s~~~~~~~~~~y~~rr~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~r~~h~~~e~~~v~~~~~al~~-- 266 (363)
T PRK00555 189 LLLMDSRARHRHAGGEYAARRASCERAAADLGVSSLRAVQDRGLAALGAIADPIDARRARHVLTENQRVLDFAAALAD-- 266 (363)
T ss_pred EEEEcCCCcccccchhhHHHHHHHHHHHHHhCccchhcCCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 9999999998753 11111111110 0010000 0011111 233445566665
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 045151 284 PDDLSITEKEERLEELMEMNQGLLQ-CMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTE 361 (387)
Q Consensus 284 ~~~~~~~~d~~~l~~~~~~~~~~l~-~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~ 361 (387)
+|++.|+++|+++|..++ .+++|+|+++.+++.+++.| +|+||||||||||++++++.+..+++.+.+.+.
T Consensus 267 -------gd~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a~~~Ga~GaklsGaG~Gg~vial~~~~~~~~~~~~l~~~ 339 (363)
T PRK00555 267 -------SDFTAAGQLLTASHASMRDDFEITTERIDLIADSAVRAGALGARMTGGGFGGCVIALVPADRAEDVADTVRRA 339 (363)
T ss_pred -------CCHHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHHHhcCCeEEEECCCCccCeEEEEEchhHHHHHHHHHHHH
Confidence 789999999999999998 99999999999999999999 999999999999999999987777888899999
Q ss_pred HHHCCc---eEEEeeecCCceEEE
Q 045151 362 LETCGF---QCLIAGIGGTGVEVC 382 (387)
Q Consensus 362 ~~~~g~---~~~~~~~~~~G~~v~ 382 (387)
|.++++ .++.+++. .|+++.
T Consensus 340 y~~~~~~~~~~~~~~~~-~g~~~~ 362 (363)
T PRK00555 340 AVTAGYPEPAVSRTYAA-PGAGEC 362 (363)
T ss_pred HHHccCCCCcEEEEecC-CCcccC
Confidence 987753 57777765 577653
No 7
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=4.6e-49 Score=383.60 Aligned_cols=319 Identities=21% Similarity=0.291 Sum_probs=241.3
Q ss_pred eEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCc-eeeeehhhHHhhhccCCCCCCC
Q 045151 3 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMEL-NFSWSVTRIKATLSHLGSPFPS 81 (387)
Q Consensus 3 ~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~ 81 (387)
++++|||||+|+|||+||||+++|++|||+++++.++++ +++.+++.+.+++. ...++++.... +
T Consensus 21 ~~~~APgRvnL~GeH~Dy~gg~vL~~AId~~~~v~i~~~----~~~~i~v~s~~~~~~~~~~~~~~~~~--~-------- 86 (382)
T PRK05101 21 HTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKR----DDRIVRVIAADYDNQQDEFSLDAPIV--P-------- 86 (382)
T ss_pred eEEECCceEEEeccceeecCCEEEEEEecccEEEEEEEC----CCCEEEEEECCCCCCceEEecCcccc--c--------
Confidence 678999999999999999999999999999999999875 56788998877642 22344332100 0
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHh
Q 045151 82 TPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGS 161 (387)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~ 161 (387)
.....|.+|+++++..+.. ......|+++.|.++||+++|||||||++||++.|++.+
T Consensus 87 ---~~~~~w~~yv~~~~~~l~~-------------------~~~~~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~ 144 (382)
T PRK05101 87 ---HPEQQWANYVRGVVKHLQE-------------------RNPDFGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQL 144 (382)
T ss_pred ---CCCCchHHHHHHHHHHHHH-------------------hCCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH
Confidence 0235799999987764320 112345899999999999999999999999999999999
Q ss_pred cCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cceeEeecc---eEEEe--CCCcccccCCCCceEEEE
Q 045151 162 LNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYGN---IIKFR--SGNMTCIKSNMPLKMLIT 235 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~~~~~~Gg---~i~~~--~~~~~~l~~~~~~~~ll~ 235 (387)
++.+ +++ .+++++|+.+|+.++|.+||. ||+++++|+ ++.++ +.+++++++|+++.|+|+
T Consensus 145 ~~~~-----------l~~---~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~d~~~~~~~~~~~~~~~~~vv~ 210 (382)
T PRK05101 145 YHLP-----------LSG---AEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRSLETKAVPMPEGVAVVII 210 (382)
T ss_pred hCCC-----------CCH---HHHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEEEcCCCceEEeeCCCCcEEEEE
Confidence 9975 554 667999999999999999995 999999997 34443 445677888888999999
Q ss_pred EeCCCC-------ChHHH-----HH--HHHHHHhhChh------------HHHHHHHHHH--HHHHHHHHHHcCCCCCCC
Q 045151 236 NTKVGR-------NTRAL-----VA--GVSERSMRHPD------------AMSSVFNAVD--SISKELSTIIESPTPDDL 287 (387)
Q Consensus 236 ~t~~~~-------~T~~~-----~~--~~~~~~~~~~~------------~~~~~~~~i~--~i~~~~~~~l~~~~~~~~ 287 (387)
+|++++ +|+.. .. .+...++..++ ..+..+..+. +.+.++..+|+.
T Consensus 211 ~sg~~~~l~~~~y~~r~~e~~~A~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~h~i~E~~rv~~a~~al~~------ 284 (382)
T PRK05101 211 NSNVKRGLVDSEYNTRRQQCETAARFFGVKALRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEAASALAA------ 284 (382)
T ss_pred eCCCCccccccchhHHHHHHHHHHHHhChHhhhcCCHHHHHHHHhhCCHHHHHHHHHHhHHHHHHHHHHHHHHc------
Confidence 999988 45431 00 01111110011 0111111122 234455667766
Q ss_pred cchHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHhhc-C-C-cccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 045151 288 SITEKEERLEELMEMNQGLLQ-CMGVSHSSIETVLRTTLKF-K-L-ASKLTGAGGGGCALTLLPTLLSATVVEKVTTELE 363 (387)
Q Consensus 288 ~~~~d~~~l~~~~~~~~~~l~-~~~~s~p~l~~l~~~a~~~-g-~-gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~ 363 (387)
+|++.||++|+++|.+|+ .+++|+|++|.|++.+++. | . |+||||||||||+++|++++..+++.+.+.+.|.
T Consensus 285 ---~d~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~Ga~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~~y~ 361 (382)
T PRK05101 285 ---GDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYE 361 (382)
T ss_pred ---CCHHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhccCCcceEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHH
Confidence 789999999999999998 7999999999999999997 7 4 7899999999999999999888889999988876
Q ss_pred HC-Cc--eEEEeeecCCceEE
Q 045151 364 TC-GF--QCLIAGIGGTGVEV 381 (387)
Q Consensus 364 ~~-g~--~~~~~~~~~~G~~v 381 (387)
++ ++ .+|.++++ +|+++
T Consensus 362 ~~~~~~~~~~~~~~~-~Ga~~ 381 (382)
T PRK05101 362 AKTGLKETFYVCKAS-QGAGQ 381 (382)
T ss_pred HhhCCCCeEEEEecC-CCccc
Confidence 65 33 47777764 68765
No 8
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=6.3e-49 Score=382.93 Aligned_cols=318 Identities=20% Similarity=0.229 Sum_probs=241.3
Q ss_pred eEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCc--eeeeehhhHHhhhccCCCCCC
Q 045151 3 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMEL--NFSWSVTRIKATLSHLGSPFP 80 (387)
Q Consensus 3 ~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~ 80 (387)
.+++|||||+|+|||+||||+++|++|||+++++.++++ .++.+++.+.+++. .+.+++++...
T Consensus 20 ~~~~APgRv~L~GEH~d~~g~~vl~~AI~~~~~v~~~~~----~~~~i~i~s~~~~~~~~~~~~~~~~~~---------- 85 (387)
T PRK05322 20 DVFFSPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKR----DDKKVRLYSANFEDLGIIEFDLDDLSF---------- 85 (387)
T ss_pred eEEEcCceeEecccceeecCceeeeeeccceEEEEEEEC----CCCEEEEEECCCCCCceEEEeccccCC----------
Confidence 578999999999999999999999999999999999886 56789998887742 23444433211
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhC-ccCeEEEEEecCCCCCCCChhHHHHHHHHHHHH
Q 045151 81 STPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIG-FKPATVVVTSDLPLGAGLGSSAAFCVSLTAALL 159 (387)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~ 159 (387)
.....|.+|+++++..+.. .... ..|+++.|+|+||.++|||||||++||++.|++
T Consensus 86 ----~~~~~w~~y~~gvi~~l~~-------------------~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~ 142 (387)
T PRK05322 86 ----DKEDDWANYPKGVLKFLQE-------------------AGYKIDHGFDILIYGNIPNGAGLSSSASIELLTGVILK 142 (387)
T ss_pred ----CCccchHHHHHHHHHHHHH-------------------cCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHH
Confidence 0235699999977764321 1111 268999999999999999999999999999999
Q ss_pred HhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cceeEeecc---eEEEe--CCCcccccCC-CCceE
Q 045151 160 GSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYGN---IIKFR--SGNMTCIKSN-MPLKM 232 (387)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~~~~~~Gg---~i~~~--~~~~~~l~~~-~~~~~ 232 (387)
.+++.+ +++ ++++++|+.+|+.++|.+||+ ||+++.+|| .+.++ +.+.+.+|++ .++.|
T Consensus 143 ~~~~~~-----------l~~---~~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d~~~~~~~~~~~~~~~~~l 208 (387)
T PRK05322 143 DLFNLD-----------LDR---LELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLDCNTLEYEYVPLDLGDYVI 208 (387)
T ss_pred HHhCCC-----------CCH---HHHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEecCCCceEEeccCCCCeEE
Confidence 999975 554 677999999999999999995 999999997 45554 3345566664 46789
Q ss_pred EEEEeCCCCChH------------HHHHHHHHHH------hhChhHHHHH---------HHHHHH------HHHHHHHHH
Q 045151 233 LITNTKVGRNTR------------ALVAGVSERS------MRHPDAMSSV---------FNAVDS------ISKELSTII 279 (387)
Q Consensus 233 ll~~t~~~~~T~------------~~~~~~~~~~------~~~~~~~~~~---------~~~i~~------i~~~~~~~l 279 (387)
+|++|+++++|. ++++.+.+.+ +..++.+..+ .+++.+ .+..+..+|
T Consensus 209 vv~dsg~~~~~~~~~yn~r~~e~~~a~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~r~~~~~~al 288 (387)
T PRK05322 209 VIMNTNKRRELADSKYNERRAECEKALEELQKKLDIKSLGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKAL 288 (387)
T ss_pred EEEECCCccccCcchhhHHHHHHHHHHHHHhhhcCccchhcCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999865 3333332211 1111111111 112221 233445555
Q ss_pred cCCCCCCCcchHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHh-hcC-CcccccCCCCCCeEEEEeCCCCCHHHHH
Q 045151 280 ESPTPDDLSITEKEERLEELMEMNQGLLQ-CMGVSHSSIETVLRTTL-KFK-LASKLTGAGGGGCALTLLPTLLSATVVE 356 (387)
Q Consensus 280 ~~~~~~~~~~~~d~~~l~~~~~~~~~~l~-~~~~s~p~l~~l~~~a~-~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~ 356 (387)
+. +|++.|+++|+++|..|+ .|++++|+++.+++.++ ..| +|+||||||+|||+++|++.+..+++.+
T Consensus 289 ~~---------~d~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~a~~~~Ga~garlsGaG~GG~vial~~~~~~~~~~~ 359 (387)
T PRK05322 289 KA---------GDLEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKE 359 (387)
T ss_pred Hh---------CCHHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHHHHhcCCccEEEEecCCCceEEEEEEcHHHHHHHHH
Confidence 54 899999999999999998 89999999999999996 468 9999999999999999999988888888
Q ss_pred HHHHHHHHCC-c--eEEEeeecCCceEE
Q 045151 357 KVTTELETCG-F--QCLIAGIGGTGVEV 381 (387)
Q Consensus 357 ~i~~~~~~~g-~--~~~~~~~~~~G~~v 381 (387)
.+.+.|+++. . .+|.++++ +|+++
T Consensus 360 ~l~~~y~~~~~~~~~~~~~~~~-~Ga~~ 386 (387)
T PRK05322 360 NVGKAYEEKIGYAASFYVAEIG-DGARE 386 (387)
T ss_pred HHHHHHHHhcCCCCcEEEEecC-CCccc
Confidence 9988887764 2 57788765 57764
No 9
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=1.8e-48 Score=382.35 Aligned_cols=342 Identities=17% Similarity=0.176 Sum_probs=239.4
Q ss_pred eEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCCCC
Q 045151 3 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPST 82 (387)
Q Consensus 3 ~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 82 (387)
++++|||||+|+|||+||+|+++|++|||+++++.+.++.+ +.++.+++.+.. ... |+++....
T Consensus 38 ~~~~APGRVnLIGEHtDYngG~VLp~AId~~~~va~~~~~~-~~~~~i~~~~~~-~~~--~~~~~~~~------------ 101 (468)
T PTZ00290 38 LFTFAPGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRVKH-FCDHKLRFATET-DEH--FVLDHLGG------------ 101 (468)
T ss_pred EEEeccceeeecccccccCCCeeeeccccCcEEEEEeecCC-CCCCeEEEEECC-Cce--eecCcccc------------
Confidence 67899999999999999999999999999999999976522 245678885444 222 32221100
Q ss_pred CCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhh-----CccCeEEEEEecCCCCCCCChhHHHHHHHHHH
Q 045151 83 PTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSII-----GFKPATVVVTSDLPLGAGLGSSAAFCVSLTAA 157 (387)
Q Consensus 83 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~A 157 (387)
......|.+|+++++... +. ..+. ...|+++.|.++||.|+|||||||+.||++.|
T Consensus 102 -~~~~~~W~nYv~gv~~~~----------------l~--~~g~~~~~~~~~G~d~~i~gdVP~GaGLSSSAAleva~~~a 162 (468)
T PTZ00290 102 -AKHNKAWTTFVRGAATLR----------------LN--RLGVAIDAPSLQGVCMVVHGTLPMGAGMSASASFGVALLNA 162 (468)
T ss_pred -cCCcccHHHHHHHHHHHH----------------HH--HhCCCcccCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHH
Confidence 012357999999876431 00 0111 23699999999999999999999999999999
Q ss_pred HHHhcCCc--cccccCC----CccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cceeEeecc-----eEEEeCCCccccc
Q 045151 158 LLGSLNSV--HLDKNHQ----GWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYGN-----IIKFRSGNMTCIK 225 (387)
Q Consensus 158 l~~~~~~~--~~~~~~~----~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~~~~~~Gg-----~i~~~~~~~~~l~ 225 (387)
++.+++.. .+.++-. ....+++.++.+|+++|+.+|+.+.|.+||+ ||+++++|+ +++|++.+++++|
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~cGiMDQ~asa~g~~~~al~iD~~~l~~~~v~ 242 (468)
T PTZ00290 163 INTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGVNVGIMDQFISAFAEEDKFMFLDCKSLTFESHD 242 (468)
T ss_pred HHHHhhhhccccccccccccccccccCcccHHHHHHHHHHHHHhhcCCCcchhhHHHHHhCCCCcEEEEecCCCeEEEec
Confidence 99987420 0000000 0001455567889999999999999999997 999999984 3556666677777
Q ss_pred CC----CCceEEEEEeCCCCChHHH-HHHHHHHHhhChhHHHH-------------------------------------
Q 045151 226 SN----MPLKMLITNTKVGRNTRAL-VAGVSERSMRHPDAMSS------------------------------------- 263 (387)
Q Consensus 226 ~~----~~~~~ll~~t~~~~~T~~~-~~~~~~~~~~~~~~~~~------------------------------------- 263 (387)
++ .++.|+|++|+++++-.+- -..++.++.+|..+.+.
T Consensus 243 l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~l~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~ 322 (468)
T PTZ00290 243 MTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHRYRGKPFTFSDLVRNPKKYTFDGDVVAFMESCK 322 (468)
T ss_pred cCCCCCCCcEEEEEeCCCcchhccccchhhHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccccccHHHHHHHhh
Confidence 64 4789999999999973211 01223332222211110
Q ss_pred ------HHHHHHHHHHHHHH------HHcCCCCCCCcchHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHh-hcC-
Q 045151 264 ------VFNAVDSISKELST------IIESPTPDDLSITEKEERLEELMEMNQGLLQ-CMGVSHSSIETVLRTTL-KFK- 328 (387)
Q Consensus 264 ------~~~~i~~i~~~~~~------~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~-~~~~s~p~l~~l~~~a~-~~g- 328 (387)
.+++.+++..+..+ +++.. ..+...+|++.||++|+++|..|+ .|++|||++|.+++.+. ..|
T Consensus 323 ~~l~~~~~~Ra~HVitEn~RV~~a~~al~~~--~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~~G~ 400 (468)
T PTZ00290 323 PLMTPGEFERGTYNIMEQIRTLEFIKLNDPE--LPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGV 400 (468)
T ss_pred hcCCHHHHHHHHHHhhHHHHHHHHHHHHHhh--hhcccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCC
Confidence 11122222222222 22110 000113568999999999998888 79999999999999764 458
Q ss_pred CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHC-C--ceEEEeeecCCceEEE
Q 045151 329 LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETC-G--FQCLIAGIGGTGVEVC 382 (387)
Q Consensus 329 ~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~-g--~~~~~~~~~~~G~~v~ 382 (387)
+|+||||+|||||+++|++++..+++++++.+.|.++ | ..+|.++++ +|+++.
T Consensus 401 ~GaRlTGaG~GGc~i~Lv~~~~~~~~~~~v~~~y~~~~g~~~~~~~~~~~-~Ga~~~ 456 (468)
T PTZ00290 401 AGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKFKARFGVENDVYPVVAG-DGAFVV 456 (468)
T ss_pred cEEEEecCCCceEEEEEechhhHHHHHHHHHHHHHHhhCCCCcEEEEecC-CCcEEE
Confidence 8999999999999999999998899999999999877 4 368888875 688876
No 10
>PLN02865 galactokinase
Probab=100.00 E-value=1.5e-48 Score=379.51 Aligned_cols=331 Identities=16% Similarity=0.137 Sum_probs=239.6
Q ss_pred eEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCCCC
Q 045151 3 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPST 82 (387)
Q Consensus 3 ~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 82 (387)
.+++|||||+|+|||+||+|+++|++|||+++++.++++ +++.+++.+.+++..++|+++........+ ..
T Consensus 31 ~~~~APGRVnlIGEHtDYngG~VLp~AI~~~~~va~~~~----~~~~i~v~s~~~~~~~~~~~~~~~~~~~~~-----~~ 101 (423)
T PLN02865 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS----GDPEVLLRSAQFEGEVRFRVDEIQHPIANV-----SS 101 (423)
T ss_pred eEEEcCcceecccccccCCCCeEEeEEeeccEEEEEEEC----CCCEEEEEECCCCCceEEeccccccccccc-----cc
Confidence 468999999999999999999999999999999999986 667899998887544556554321100000 00
Q ss_pred CCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCc-cCeEEEEEecC-CCCCCCChhHHHHHHHHHHHHH
Q 045151 83 PTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGF-KPATVVVTSDL-PLGAGLGSSAAFCVSLTAALLG 160 (387)
Q Consensus 83 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~i~i~s~i-P~g~GLGSSaA~~va~~~Al~~ 160 (387)
+......|.+|+++++..+.. .+... .|+++.|++++ |.++|||||||++||++.|++.
T Consensus 102 ~~~~~~~W~~Yv~gv~~~l~~-------------------~g~~~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~ 162 (423)
T PLN02865 102 DSKEESNWGDYARGAVYALQS-------------------RGHALSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALEN 162 (423)
T ss_pred cCCCCCCHHHHHHHHHHHHHH-------------------cCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHH
Confidence 001235799999988765421 11223 69999999999 5899999999999999999999
Q ss_pred hcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cceeEeec---ce--EEEeCCCcccccCC-------
Q 045151 161 SLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYG---NI--IKFRSGNMTCIKSN------- 227 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~~~~~~G---g~--i~~~~~~~~~l~~~------- 227 (387)
++++. +++ .+++++|+.+|+.++|.+||. ||+++.+| ++ ++|++.+.+.+|++
T Consensus 163 ~~~~~-----------~~~---~~la~~a~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~iDf~~l~~~~vpl~~~~~~~~ 228 (423)
T PLN02865 163 ANNLT-----------VSP---EDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFMDCKTLDHKLVSLQFQQPGGE 228 (423)
T ss_pred HhCCC-----------CCH---HHHHHHHHHHHHHhcCCCCccccHHHHHhcccCceEEEEccCCCcceeecCcccccCC
Confidence 99875 554 677999999999999999995 99985555 54 56766666666654
Q ss_pred CCceEEEEEeCCCCChH-HHHHHHHHHHhhChhHHHHH--------------------------------HHHHHHHHHH
Q 045151 228 MPLKMLITNTKVGRNTR-ALVAGVSERSMRHPDAMSSV--------------------------------FNAVDSISKE 274 (387)
Q Consensus 228 ~~~~~ll~~t~~~~~T~-~~~~~~~~~~~~~~~~~~~~--------------------------------~~~i~~i~~~ 274 (387)
.++.|+++++++++.-. + ..++.++.+|..+.+.+ .++..++..+
T Consensus 229 ~~~~ivv~~s~~~h~l~~~--~~Yn~Rr~Ec~~aa~~l~~~~~~~~~~~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E 306 (423)
T PLN02865 229 KPFKILLAFSGLRHALTNK--PGYNLRVSECQEAARFLLEASGNDELEPLLCNVEPEVYEAHKCKLEAVLARRAEHYFSE 306 (423)
T ss_pred CCeEEEEEeCCCchhhccc--chhhHHHHHHHHHHHHHHHhcCCccchhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 36889999999988621 0 11222222222111111 1122222222
Q ss_pred HHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHhhc-C-CcccccCCCCCCeEEEEeCCCCC
Q 045151 275 LSTIIESPTPDDLSITEKEERLEELMEMNQGLLQ-CMGVSHSSIETVLRTTLKF-K-LASKLTGAGGGGCALTLLPTLLS 351 (387)
Q Consensus 275 ~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~-~~~~s~p~l~~l~~~a~~~-g-~gaklsGaG~Gg~v~al~~~~~~ 351 (387)
..+.++.. ..+..+|++.||++|+++|..++ .|++|||++|.+++.+++. | +|+||||+|||||+++|++++.+
T Consensus 307 ~~Rv~~~~---~al~~~d~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a~~~~Ga~GaR~tGgGfGGc~vaLv~~~~~ 383 (423)
T PLN02865 307 NMRVIKGV---EAWASGNLEEFGKLISASGLSSIENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVDAEMA 383 (423)
T ss_pred HHHHHHHH---HHHHhCCHHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHHHhcCCCeEEEEeccCCccEEEEEEchhHH
Confidence 21111100 00123789999999999999999 8999999999999999985 8 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHC--------Cc--eEEEeeecCCceEE
Q 045151 352 ATVVEKVTTELETC--------GF--QCLIAGIGGTGVEV 381 (387)
Q Consensus 352 ~~~~~~i~~~~~~~--------g~--~~~~~~~~~~G~~v 381 (387)
+++++++.+.|++. +. .++.++++ +|+++
T Consensus 384 ~~~~~~v~~~Y~~~~p~~~~~~~~~~~~~~~~p~-~Ga~~ 422 (423)
T PLN02865 384 EEAASFVRDEYEKAQPELASNINGDKPVLICEAG-DCARV 422 (423)
T ss_pred HHHHHHHHHHHHhhccccccccCCCCcEEEEecC-CCccc
Confidence 99999999988764 23 46777764 57764
No 11
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=100.00 E-value=1.5e-47 Score=358.83 Aligned_cols=271 Identities=37% Similarity=0.507 Sum_probs=220.7
Q ss_pred cCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCCCCCCCC
Q 045151 7 APGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPSTPTTC 86 (387)
Q Consensus 7 APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 86 (387)
|||||+|+|||+||||++||++|||+|+++.+.++ .++ +++.+..+... ...... .
T Consensus 1 aPgkv~L~GEH~v~~g~~al~~aI~~~~~~~~~~~----~~~-~~i~~~~~~~~----~~~~~~---------------~ 56 (273)
T TIGR00549 1 APGKIILFGEHAVVYGEPAIAAPIPLRTTVTVIES----SDG-SFIESDLGRGS----LDDAPQ---------------E 56 (273)
T ss_pred CCceEEEEecChhccCCCeeEEEecccEEEEEEEc----CCC-ceEeccccCCc----HhHhhH---------------H
Confidence 79999999999999999999999999999999875 233 55555444211 111111 1
Q ss_pred cHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCcc
Q 045151 87 SMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVH 166 (387)
Q Consensus 87 ~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~ 166 (387)
...|.+|++++++.+.. ....++++.++|+||.++|||||||+++|++.|++.+++.+
T Consensus 57 ~~~~~~~v~~~l~~~~~---------------------~~~~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~- 114 (273)
T TIGR00549 57 LDGLVSYIAEALSYFSE---------------------LNPPPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSE- 114 (273)
T ss_pred HHHHHHHHHHHHHHhhc---------------------cCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCC-
Confidence 25688999887764321 11234999999999999999999999999999999999875
Q ss_pred ccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCCC-cccccCCCCceEEEEEeCCCCChHH
Q 045151 167 LDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGN-MTCIKSNMPLKMLITNTKVGRNTRA 245 (387)
Q Consensus 167 ~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~~-~~~l~~~~~~~~ll~~t~~~~~T~~ 245 (387)
+++ ++++++|+.+|+.++|.+||+|++++++||++.|+.++ ...++.+.++++++++|+.+++|.+
T Consensus 115 ----------~~~---~~l~~~a~~~E~~~~G~~sG~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~lvl~~tg~~~~T~~ 181 (273)
T TIGR00549 115 ----------LSK---EELAKLANEAEKIAHGKPSGIDTATSTYGGPVYFEKGEGEFTKLISLDGYFVIADTGVSGSTKE 181 (273)
T ss_pred ----------CCH---HHHHHHHHHHHHHhCCCCchHhHHHHhcCCeEEEEcCCCceeeccCCCeEEEEEECCCCCcHHH
Confidence 544 67789999999999999999999999999999887543 3344445568999999999999999
Q ss_pred HHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHh
Q 045151 246 LVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIETVLRTTL 325 (387)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~p~l~~l~~~a~ 325 (387)
+++.+++.++..++.++..++++.+++.++..+++. +|++.|+++|+.+|..++.+++++|+++++++.++
T Consensus 182 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---------~d~~~lg~l~~~~~~~l~~~~vs~p~l~~l~~~~~ 252 (273)
T TIGR00549 182 AVARVRQLLERFPELIDSIMDAIGELTLEAKAALQD---------GDVESLGELMNINQGLLKALGVSHPKLDQLVETAR 252 (273)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 988776655555544555677778888888888886 78999999999999999989999999999999999
Q ss_pred hcC-CcccccCCCCCCeEEEE
Q 045151 326 KFK-LASKLTGAGGGGCALTL 345 (387)
Q Consensus 326 ~~g-~gaklsGaG~Gg~v~al 345 (387)
+.| +|+||||||+|||+++|
T Consensus 253 ~~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 253 KAGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred HCCCceeeeccCCCCceEEeC
Confidence 999 99999999999999985
No 12
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=2.6e-47 Score=373.04 Aligned_cols=318 Identities=19% Similarity=0.232 Sum_probs=235.0
Q ss_pred eEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCce-eeeehhhHHhhhccCCCCCCC
Q 045151 3 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELN-FSWSVTRIKATLSHLGSPFPS 81 (387)
Q Consensus 3 ~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~ 81 (387)
++++|||||+|+|||+||+|+++|++|||+++++.++++ +++.+++.+.+++.. ..++++. +.
T Consensus 18 ~~~~APgrv~L~GeH~dy~g~~vl~~AI~~~~~v~~~~~----~~~~i~i~~~~~~~~~~~~~~~~-~~----------- 81 (386)
T TIGR00131 18 FTARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVR----DDKNVRIYLANADNKFAERSLDL-PL----------- 81 (386)
T ss_pred EEEECCcceEeeccceeeCCceEEeeEeeccEEEEEEEC----CCCeEEEEECCCCCcceEEECCC-CC-----------
Confidence 678999999999999999999999999999999999885 566788887776422 1222221 10
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhC-ccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 045151 82 TPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIG-FKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLG 160 (387)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~ 160 (387)
.| ..+..|.+|++.++..+. . .... ..|+++.|+++||+++|||||||++||++.|++.
T Consensus 82 ~~-~~~~~w~~y~~~~~~~~~----------------~---~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~ 141 (386)
T TIGR00131 82 DG-SEVSDWANYFKGVLHVAQ----------------E---RFNSFPLGADIVCSGNVPTGSGLSSSAAFECAVGAVLQN 141 (386)
T ss_pred CC-CCCCCcHhHHHHHHHHHH----------------H---hcCCCCCceEEEEECCCCCCCCcchHHHHHHHHHHHHHH
Confidence 00 012579999988775431 0 1112 3489999999999999999999999999999999
Q ss_pred hcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cceeEeecc---eEEE--eCCCcccccCCC-CceEE
Q 045151 161 SLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYGN---IIKF--RSGNMTCIKSNM-PLKML 233 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~~~~~~Gg---~i~~--~~~~~~~l~~~~-~~~~l 233 (387)
+++.+ +++ ++++++|+.+|+.++|.++|. ||+++++|| ++.+ ++.+++++++++ ++.|+
T Consensus 142 ~~~~~-----------~~~---~~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~~~~~~~~~~~~~~~~~~lv 207 (386)
T TIGR00131 142 MGHLP-----------LDS---KQILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVECRSLKATPFKFPQLGIAFV 207 (386)
T ss_pred HcCCC-----------CCH---HHHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEEcCCCceeeecCCCCCeEEE
Confidence 99875 544 567899999999999998764 999999998 3444 444567778776 79999
Q ss_pred EEEeCCCCChHHH-HH-H---HH------------HHHhhChhHHHH---HHHHHHHH--------------HHHHHHHH
Q 045151 234 ITNTKVGRNTRAL-VA-G---VS------------ERSMRHPDAMSS---VFNAVDSI--------------SKELSTII 279 (387)
Q Consensus 234 l~~t~~~~~T~~~-~~-~---~~------------~~~~~~~~~~~~---~~~~i~~i--------------~~~~~~~l 279 (387)
|++|+++++|.+. +. + +. ..++..++.+.. .+..+..+ +.++.++|
T Consensus 208 v~~s~~~~~t~~~~y~~r~~e~~~a~~~l~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~rv~~~~~al 287 (386)
T TIGR00131 208 IANTNVKRTLAPSNYNTRRQECTTAANFLAATDKGALRDFMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAM 287 (386)
T ss_pred EEeCCCccccccchhHHHHHHHHHHHHHhccccccchhhCCHHHHhhhHhhHhhcCHHHHhhHheeehHHHHHHHHHHHH
Confidence 9999999987522 00 0 00 011111221111 11111111 12344555
Q ss_pred cCCCCCCCcchHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHH-hhcC-CcccccCCCCCCeEEEEeCCCCCHHHHH
Q 045151 280 ESPTPDDLSITEKEERLEELMEMNQGLLQ-CMGVSHSSIETVLRTT-LKFK-LASKLTGAGGGGCALTLLPTLLSATVVE 356 (387)
Q Consensus 280 ~~~~~~~~~~~~d~~~l~~~~~~~~~~l~-~~~~s~p~l~~l~~~a-~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~ 356 (387)
+. +|++.||++|+++|.+++ .+++|+|++|.+++.+ +..| +|+||||||||||+++|++++.++++.+
T Consensus 288 ~~---------~d~~~lG~lm~~sh~~l~~~~~vs~peld~lv~~a~~~~GAlGakltGaG~GG~vial~~~~~~~~v~~ 358 (386)
T TIGR00131 288 KD---------NDFKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQ 358 (386)
T ss_pred Hh---------CcHHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHhcCCCcEEEEecCCCceEEEEEEcHHHHHHHHH
Confidence 54 789999999999999999 5899999999999875 5678 9999999999999999999988788888
Q ss_pred HHHHHHHHC-Cc--eEEEeeecCCceE
Q 045151 357 KVTTELETC-GF--QCLIAGIGGTGVE 380 (387)
Q Consensus 357 ~i~~~~~~~-g~--~~~~~~~~~~G~~ 380 (387)
++.+.|.+. |. .++++++++ |++
T Consensus 359 ~~~~~y~~~~~~~~~~~~~~~~~-Ga~ 384 (386)
T TIGR00131 359 AVADKYPKKTGLELTFYVIVSKP-GAG 384 (386)
T ss_pred HHHHHHHHhhCCCCcEEEEEECC-CcC
Confidence 898888443 43 578888775 765
No 13
>PRK03926 mevalonate kinase; Provisional
Probab=100.00 E-value=1.5e-45 Score=350.15 Aligned_cols=299 Identities=31% Similarity=0.415 Sum_probs=239.4
Q ss_pred ceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCCC
Q 045151 2 EVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPS 81 (387)
Q Consensus 2 ~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 81 (387)
+++++|||||+|+|||+|+||+++|.+||++|+++.++++ + +.+++.... . .
T Consensus 1 ~~~~~aPgkv~L~Geh~~~~g~~~l~~aI~~~~~v~i~~~----~-~~~~i~~~~-~-----------~----------- 52 (302)
T PRK03926 1 MVLCSAPGKIYLFGEHAVVYGKPAIACAIDLRTYVRAEFN----D-DSIYIESDY-G-----------K----------- 52 (302)
T ss_pred CeEEeeeeEEEEEecceeecCCeEEEEEecceEEEEEEEC----C-CceEEeccc-c-----------c-----------
Confidence 3789999999999999999999999999999999999764 2 223332110 0 0
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHh
Q 045151 82 TPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGS 161 (387)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~ 161 (387)
.++|..++..+++.+ .. ....++++|+++++||.++|||||||+++|++.|++.+
T Consensus 53 -----~~~~~~~~~~~~~~~----------------~~----~~~~~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~ 107 (302)
T PRK03926 53 -----TGEKHPYVSAAIEKM----------------RE----EADKDGVTVSITSQIPVGSGLGSSAAVTVATIGALNRL 107 (302)
T ss_pred -----ccchhHHHHHHHHHH----------------HH----hcCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 012333454443321 11 12345899999999999999999999999999999999
Q ss_pred cCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCCCcccccCCCCceEEEEEeCCCC
Q 045151 162 LNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVGR 241 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~~~~~l~~~~~~~~ll~~t~~~~ 241 (387)
++.+ +++ ++++++|+.+|..++|.++|.|++++.+||++.+.... +++. +++.+++++|+.++
T Consensus 108 ~~~~-----------l~~---~~l~~la~~~E~~~~G~~sg~D~~~~~~Gg~~~~~~~~--~l~~-~~~~~vl~~~~~~~ 170 (302)
T PRK03926 108 LGLG-----------LSL---EEIAKLGHKVELLVQGAASPTDTYVSTMGGFVTIPDRK--KLPF-PECGIVVGYTGSSG 170 (302)
T ss_pred hCCC-----------CCH---HHHHHHHHHHHHHHcCCCchHHHHHHhcCCeEEEcCCC--cCCC-CCceEEEEECCCCC
Confidence 9975 544 66799999999999999999999999999988776433 4443 57889999999999
Q ss_pred ChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 045151 242 NTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIETVL 321 (387)
Q Consensus 242 ~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~p~l~~l~ 321 (387)
+|+++++.+++.+...|+.++..++++.++...+..++.. +|++.|+++|+.+|..++.+++++|++++++
T Consensus 171 sT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---------~d~~~l~~~~~~~~~~~~~~~~~~p~l~~l~ 241 (302)
T PRK03926 171 STKELVANVRKLKEEYPELIEPILSSIGKISEKGEELILS---------GDYVSLGELMNINQGLLDALGVSTKELSELI 241 (302)
T ss_pred cHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999988876655556665555666777777777677765 7899999999999988888899999999999
Q ss_pred HHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecCCceEEEe
Q 045151 322 RTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEVCF 383 (387)
Q Consensus 322 ~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~G~~v~~ 383 (387)
+.+++.| +|+||||||+|||++++++++. .+++.+.+++.++.+++++++++|++|+.
T Consensus 242 ~~~~~~ga~ga~lSGaG~Gg~v~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~G~~i~~ 300 (302)
T PRK03926 242 YAARTAGALGAKITGAGGGGCMVALAAPEK----QSEVATAIKIAGGKPIITKITDEGLRIEE 300 (302)
T ss_pred HHHHhCCCceeeeccCCCCCEEEEEecccc----HHHHHHHHHhcCCeEEEEecCCCeeEEEe
Confidence 9999999 8999999999999999998753 44566777777789999999999999864
No 14
>PLN02521 galactokinase
Probab=100.00 E-value=3.1e-46 Score=371.10 Aligned_cols=330 Identities=19% Similarity=0.261 Sum_probs=228.8
Q ss_pred eEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCc-eeeeehhhHHhhhccCCCCCCC
Q 045151 3 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMEL-NFSWSVTRIKATLSHLGSPFPS 81 (387)
Q Consensus 3 ~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~ 81 (387)
+.++|||||+|+|||+||+|++||++||++++++.++++. +++.+++.+.+... ...++++.... .+
T Consensus 49 ~~~~APGRVnLiGEHtDy~gg~vLp~AI~~~~~v~~~~~~---~~~~i~i~s~~~~~~~~~~~~~~~~~-~~-------- 116 (497)
T PLN02521 49 LFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAE---GSKKLRIANVNDKYTTCTFPADPDQE-VD-------- 116 (497)
T ss_pred EEEECCceEEEeccceeecCCeEEEEEEcCcEEEEEEEcC---CCCEEEEEECCCCCCceeeecCcccc-cc--------
Confidence 5789999999999999999999999999999999999851 23678888766532 22333322100 00
Q ss_pred CCCCCcHHHHHHH----HHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHH
Q 045151 82 TPTTCSMEVIKSI----AVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAA 157 (387)
Q Consensus 82 ~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~A 157 (387)
.....|.+|+ +++++.+.. .........|+++.|+|+||.++|||||||++||++.|
T Consensus 117 ---~~~~~W~nYv~~~~~gv~~~l~~----------------~~~~~~~~~g~~i~i~s~IP~gsGLgSSAA~~vA~~~a 177 (497)
T PLN02521 117 ---LANHKWGNYFICGYKGVFEFLKS----------------KGVDVGPPVGLDVVVDGTVPTGSGLSSSAALVCSAAIA 177 (497)
T ss_pred ---cccccHHHHHHHHHHHHHHHHHH----------------hccccCCCCCeEEEEecCCCCCCCcchHHHHHHHHHHH
Confidence 1235699999 444432210 00000123489999999999999999999999999999
Q ss_pred HHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeec--ce---EEEeCCCcccccCCCCceE
Q 045151 158 LLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYG--NI---IKFRSGNMTCIKSNMPLKM 232 (387)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~G--g~---i~~~~~~~~~l~~~~~~~~ 232 (387)
++.+++.+ +++ ++++++|+.+|+..++.++|+||+++++| |. ++|++.+++++|+|.++.|
T Consensus 178 l~~~~~~~-----------l~~---~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~~~l~~~~v~~p~~~~~ 243 (497)
T PLN02521 178 IMAALGLN-----------FTK---KEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDFNPVRATDVQLPAGGTF 243 (497)
T ss_pred HHHHhCCC-----------CCH---HHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEecCCCceEEeecCCCcEE
Confidence 99999875 544 67899999999965444555699999999 42 4566667788888888999
Q ss_pred EEEEeCCCCChHHHH-HHHHHHHhhChhHHHHH-----------------------------------------------
Q 045151 233 LITNTKVGRNTRALV-AGVSERSMRHPDAMSSV----------------------------------------------- 264 (387)
Q Consensus 233 ll~~t~~~~~T~~~~-~~~~~~~~~~~~~~~~~----------------------------------------------- 264 (387)
+|++|++++...... ..++.++.+|..+.+.+
T Consensus 244 vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (497)
T PLN02521 244 VIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHE 323 (497)
T ss_pred EEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhhhcccccchhhHHHhhhhhcc
Confidence 999999665421111 11222222222111100
Q ss_pred --------------------------------------HHHHHHHHHH------HHHHHcCCCCCCCcchHHHHHHHHHH
Q 045151 265 --------------------------------------FNAVDSISKE------LSTIIESPTPDDLSITEKEERLEELM 300 (387)
Q Consensus 265 --------------------------------------~~~i~~i~~~------~~~~l~~~~~~~~~~~~d~~~l~~~~ 300 (387)
.++..++..+ +.++++... ..+.+++.||++|
T Consensus 324 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~----~~~~~~~~lg~lm 399 (497)
T PLN02521 324 GPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSL----SEEEKLKKLGDLM 399 (497)
T ss_pred ccCCHHHHHHHhCCcHHHHhhccccccccccccchhHHhhhhhheecHHHHHHHHHHHHHhcC----ccchHHHHHHHHH
Confidence 0000011001 111111100 0012488999999
Q ss_pred HHHHHHHh-hcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHC----------Cc-
Q 045151 301 EMNQGLLQ-CMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETC----------GF- 367 (387)
Q Consensus 301 ~~~~~~l~-~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~----------g~- 367 (387)
+++|..++ .+++|||++|.+++.+++.| +|+||||||||||+++|++++..+++.+.+.+.|.+. +.
T Consensus 400 ~~sh~slr~~~~vS~~elD~lv~~a~~~Ga~GaRltGaG~GG~~i~lv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ 479 (497)
T PLN02521 400 NESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVIKEEDLG 479 (497)
T ss_pred HHHHHHHhhccCCCcHHHHHHHHHHHhcCCcEEEECCCCCCeEEEEEECHHHHHHHHHHHHHHHHhhccccccccccCCC
Confidence 99999999 78999999999999999999 9999999999999999999987778888888888764 32
Q ss_pred -eEEEeeecCCceEEE
Q 045151 368 -QCLIAGIGGTGVEVC 382 (387)
Q Consensus 368 -~~~~~~~~~~G~~v~ 382 (387)
.++.++++ .|+++.
T Consensus 480 ~~~~~~~p~-~Ga~~~ 494 (497)
T PLN02521 480 LYVFASKPS-SGAAIL 494 (497)
T ss_pred CcEEEEecC-CCceEe
Confidence 46677665 587764
No 15
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=2.8e-44 Score=347.67 Aligned_cols=314 Identities=20% Similarity=0.260 Sum_probs=234.8
Q ss_pred EEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCCCCC
Q 045151 4 KARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPSTP 83 (387)
Q Consensus 4 ~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 83 (387)
+++|||||+|+|||+||+|+++|++|||+|+++.+++. +.+++.+.+++....+++++.+
T Consensus 2 ~~~APgrv~L~Geh~d~~~g~~l~~aI~~~~~v~~~~~------~~~~i~~~~~~~~~~~~~~~~~-------------- 61 (351)
T PRK03817 2 KVKSPGRVNLIGEHTDYNDGYVLPFAINLYTFLEIEKS------EKFIFYSENFNEEKTFELDKLE-------------- 61 (351)
T ss_pred EEEeeeeEEEeccceeeCCCeEEEEEecCcEEEEEEeC------CeEEEEECCCCCcEEEeCCccC--------------
Confidence 57899999999999999999999999999999999763 4578888877654555543321
Q ss_pred CCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcC
Q 045151 84 TTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLN 163 (387)
Q Consensus 84 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~ 163 (387)
....|.+|++.++..+.. ......++++.++++||.++|||||||+++|++.|++.+++
T Consensus 62 --~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~ 120 (351)
T PRK03817 62 --KLNSWADYIKGVIWVLEK-------------------RGYEVGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYN 120 (351)
T ss_pred --CCCchHHHHHHHHHHHHH-------------------cCCCCCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhC
Confidence 124688888876653210 11234689999999999999999999999999999999998
Q ss_pred CccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cceeEeecc---eEEEeCC--CcccccCCCCceEEEEEe
Q 045151 164 SVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYGN---IIKFRSG--NMTCIKSNMPLKMLITNT 237 (387)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~~~~~~Gg---~i~~~~~--~~~~l~~~~~~~~ll~~t 237 (387)
.+ +++ .+++++|..+|+.++|.++|+ |+.++.+|+ ++.++.. ...++++++++++++++|
T Consensus 121 ~~-----------~~~---~~l~~~a~~~E~~~~g~~~g~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s 186 (351)
T PRK03817 121 LN-----------LSK---LELALLAREAENEFVGVPCGIMDQFAVAFGKKDHAIFLDTMTLEYEYVPFPEDYEILVFDT 186 (351)
T ss_pred CC-----------CCH---HHHHHHHHHhcccccCCCCcCchhhheeeccCCEEEEEecCCCceEEEecCCCcEEEEEeC
Confidence 75 554 567899999999999999995 999988985 4444433 345677788999999999
Q ss_pred CCCCChHH--------HHHHHHHHHh-----hChh-HH----HHHHHHHHHHH------HHHHHHHcCCCCCCCcchHHH
Q 045151 238 KVGRNTRA--------LVAGVSERSM-----RHPD-AM----SSVFNAVDSIS------KELSTIIESPTPDDLSITEKE 293 (387)
Q Consensus 238 ~~~~~T~~--------~~~~~~~~~~-----~~~~-~~----~~~~~~i~~i~------~~~~~~l~~~~~~~~~~~~d~ 293 (387)
+.++.+.. ....+.+... +.+. .. ..+.+.+.+++ ..+..+++. +|+
T Consensus 187 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~v~e~~r~~~~~~al~~---------~d~ 257 (351)
T PRK03817 187 GVKRELASSEYNERRQECEEALKILGKKSSKEVTEEDLSKLPPLLRKRAGYVLRENERVLKVRDALKE---------GDI 257 (351)
T ss_pred CCccccccchhHHHHHHHHHHHHHhCccchhcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHc---------CCH
Confidence 97765421 1111111100 0000 00 11223333333 234555655 799
Q ss_pred HHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHC-Cc--e
Q 045151 294 ERLEELMEMNQGLLQ-CMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETC-GF--Q 368 (387)
Q Consensus 294 ~~l~~~~~~~~~~l~-~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~-g~--~ 368 (387)
+.||++|+++|..++ .+++++|+++++++.+++.| +|+||||||||||+++|++++..+++.+.+++++.+. ++ .
T Consensus 258 ~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~~GalGaklsGaG~Gg~vlal~~~~~~~~~~~~l~~~~~~~~~~~~~ 337 (351)
T PRK03817 258 ETLGELLTESHWDLADNYEVSCEELDFFVEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEYKKRFGIDPK 337 (351)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHcCCCEEEEecCCCCeEEEEEEchHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999998 69999999999999999999 9999999999999999999877777888888887543 33 5
Q ss_pred EEEeeecCCceEEE
Q 045151 369 CLIAGIGGTGVEVC 382 (387)
Q Consensus 369 ~~~~~~~~~G~~v~ 382 (387)
++.++++ .|++|.
T Consensus 338 ~~~~~~~-~G~~~~ 350 (351)
T PRK03817 338 YFVVESS-DGVRKI 350 (351)
T ss_pred EEEEecC-CCceeC
Confidence 7777766 588874
No 16
>PTZ00298 mevalonate kinase; Provisional
Probab=100.00 E-value=6.7e-44 Score=341.44 Aligned_cols=303 Identities=26% Similarity=0.341 Sum_probs=226.3
Q ss_pred EEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCCCCC
Q 045151 4 KARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPSTP 83 (387)
Q Consensus 4 ~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 83 (387)
...|||||+|||||+|+||.++|..+|+++.++.++..+ ..+.+.+.... ..++..
T Consensus 12 ~~~~~~kvil~GEHaVvyg~~aI~~~I~~~d~~~i~~~~---~~~~~~~~~~~---------~~~~~~------------ 67 (328)
T PTZ00298 12 KHIGYGKVILFGEHFVVYGAEAIVAGIDEYTECRLELTK---GVPGLQVVDQR---------PAVPGY------------ 67 (328)
T ss_pred CCCcCeeEEEEecceeecCCchhhhecccceEEEEEEcc---CCCCceecccc---------ccccch------------
Confidence 457999999999999999999999999999877776431 11222211100 000000
Q ss_pred CCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhh-CccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhc
Q 045151 84 TTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSII-GFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSL 162 (387)
Q Consensus 84 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~ 162 (387)
..+..+.+.++.+. |+... ... ..+|++|+|+++||.++|||||||++||++.|++.++
T Consensus 68 ---~~~~~n~~~~a~~~----------------~~~~~-~~~~~~~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~ 127 (328)
T PTZ00298 68 ---IVEKREEQRKAHQL----------------VLRHL-NIDTSVDGLKMHLGGPLVPSSGIGASASDVVSLSRALSELY 127 (328)
T ss_pred ---HHHhHHHHHHHHHH----------------HHHHH-hcccCCCCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHh
Confidence 00011222222111 11110 111 1248999999999999999999999999999999999
Q ss_pred CCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCCC----cccccCCCCceEEEEEeC
Q 045151 163 NSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGN----MTCIKSNMPLKMLITNTK 238 (387)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~~----~~~l~~~~~~~~ll~~t~ 238 (387)
+.+ +++ ++++++|+.+|+.++|.++|+|++++++||++.++..+ ++++++++++.+++++|+
T Consensus 128 ~~~-----------ls~---~el~~~a~~~E~~~~g~~sG~D~~~~~~Gg~~~~~~~~g~~~~~~l~~~~~~~lvv~~~~ 193 (328)
T PTZ00298 128 QLN-----------LTE---EEVNLSAFVGEGGYHGTPSGADNTAATYGGLISYRRVNGKSVFKRIAFQQPLYLVVCSTG 193 (328)
T ss_pred CCC-----------CCH---HHHHHHHHHHHHHhcCCCChHHHHHHHcCCeEEEecCCCccceeEecCCCCCeEEEEECC
Confidence 976 554 56789999999999999999999999999998876432 456666678889999999
Q ss_pred CCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCHHHH
Q 045151 239 VGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIE 318 (387)
Q Consensus 239 ~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~p~l~ 318 (387)
.+.+|+++++.+++.++..|+.++..++.+++++.++..++.. +|++.++++|+.+|+.++.+++++|+++
T Consensus 194 ~~~sT~~~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~al~~---------~d~~~lg~~m~~~~~~l~~~~v~~p~l~ 264 (328)
T PTZ00298 194 ITASTTKVVGDVRKLKENQPTWFNRLLENYNACVSEAKEALQK---------GNLFRVGELMNANHDLCQKLTVSCRELD 264 (328)
T ss_pred CchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999988776655555655556677777778787888876 7899999999999999998889999999
Q ss_pred HHHHHHhhcC-CcccccCCCCCCeEEEEeCC-CCCHHHHHHHHHHHHHCCceEEEeee
Q 045151 319 TVLRTTLKFK-LASKLTGAGGGGCALTLLPT-LLSATVVEKVTTELETCGFQCLIAGI 374 (387)
Q Consensus 319 ~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~-~~~~~~~~~i~~~~~~~g~~~~~~~~ 374 (387)
++++.+++.| +|+||||||+|||+++|+++ +..++..+.+.+.+...+ .+|+..+
T Consensus 265 ~l~~~~~~~Ga~gaklSGsG~GG~v~al~~~~~~a~~~~~~l~~~~~~~~-~~w~~~~ 321 (328)
T PTZ00298 265 SIVQTCRTYGALGAKMSGTGRGGLVVALAASEDQRDAIAKAVRARCPEAK-FVWRYTV 321 (328)
T ss_pred HHHHHHHhCCCceeEeccCCCCeEEEEEecchhhHHHHHHHHHHHhhhcC-CeEEEEe
Confidence 9999999999 89999999999999999986 334445556666666655 3444443
No 17
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=100.00 E-value=1.6e-43 Score=368.39 Aligned_cols=334 Identities=15% Similarity=0.192 Sum_probs=253.9
Q ss_pred eEEEcCceEEEEeccce------eeCCeeeEeeeccc----eEEEEEccCCCCCCCcEEEEecCCCceeeeeh-hhHHhh
Q 045151 3 VKARAPGKIILAGEHAV------VHGSTAVAACIDLY----TYVSLRFPSDSDDDDTLKLVLKDMELNFSWSV-TRIKAT 71 (387)
Q Consensus 3 ~~~~APgkv~L~GEh~~------~~g~~~l~~ai~~~----~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l-~~~~~~ 71 (387)
++++|||||+|+|||+| |+||.++++||+++ +++.++++ .++.+++.+.+++....++. +++..
T Consensus 610 ~~~~aPgRVnLiGghTDtPpy~~ynGG~VLn~AId~~g~~pi~v~v~~~----~d~~irl~S~d~~~~~~v~~~~~l~~- 684 (974)
T PRK13412 610 VWGRSPVRIDLAGGWTDTPPYCLYSGGNVVNLAIELNGQPPLQVYVKPC----SEPHIVLRSIDLGAMEVVRTNEELRD- 684 (974)
T ss_pred EEEeCceEEeecccCcCCCcccCcCCcEEEEEEEeCCCCccEEEEEEEC----CCCeEEEEECCCCCceEEecchhhcc-
Confidence 34599999999999999 99999999999996 99999875 67889999988854322221 22111
Q ss_pred hccCCCCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHH
Q 045151 72 LSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFC 151 (387)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~ 151 (387)
+ ....+|.+|+++++...+.-.. ....-...+.......+ .|++|.+.++||.|+|||||||++
T Consensus 685 -----------~-~~~~~~~~~~K~al~~~G~~~~---~~~~~~~~l~e~l~~~G-~G~~I~i~s~IP~GsGLGSSAAla 748 (974)
T PRK13412 685 -----------Y-KKVGSPFSIPKAALCLAGFAPR---FSAESYASLEEQLKAFG-SGIEITLLAAIPAGSGLGTSSILA 748 (974)
T ss_pred -----------c-ccccchHhhhhhhheecccccc---cccchhHHHHHHHHhcC-CCeEEEEecCCCCCCCccHHHHHH
Confidence 0 0124688888877653211000 00000001110001112 589999999999999999999999
Q ss_pred HHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCCC-------cccc
Q 045151 152 VSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGN-------MTCI 224 (387)
Q Consensus 152 va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~~-------~~~l 224 (387)
||++.|++.+++.+ +++ ++++++|+.+|+..+|.+++.|++++++||++.++... ++++
T Consensus 749 vA~l~AL~~~~g~~-----------ls~---~ela~~A~~~E~~lhg~~g~qDq~~a~~GG~~~i~~~~~~~~~~~v~~L 814 (974)
T PRK13412 749 ATVLGAISDFCGLA-----------WDK---NEICNRTLVLEQLLTTGGGWQDQYGGVLPGVKLLQTGAGFAQSPLVRWL 814 (974)
T ss_pred HHHHHHHHHHhCCC-----------CCH---HHHHHHHHHHHHHHCCCCchhhhhhHhcCCeEEEEecCCcccCcceeec
Confidence 99999999999975 443 67899999999998888888899999999988765321 2334
Q ss_pred cCCC------CceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHH
Q 045151 225 KSNM------PLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEE 298 (387)
Q Consensus 225 ~~~~------~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~ 298 (387)
+.+. +-+++|++||++++|+++++.+.+++...++.....+++|++++.++.++|+. +|++.||+
T Consensus 815 ~~~~~~~~eLe~~LlL~yTGitR~T~~iV~~Vv~~~~~~~~~~~~~l~~ig~La~ea~~ALe~---------gD~~~LG~ 885 (974)
T PRK13412 815 PDSLFTQPEYRDCHLLYYTGITRTAKGILAEIVRSMFLNSTAHLQLLHEMKAHALDMYEAIQR---------GEFEEFGR 885 (974)
T ss_pred CcchhhhhhccCcEEEEECCCeeeHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHc---------CCHHHHHH
Confidence 4321 34699999999999999998876655555555566889999999999999987 78999999
Q ss_pred HHHHHHHHHhhc--CCCCHHHHHHHHHHhhcCCcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHC---CceE-EEe
Q 045151 299 LMEMNQGLLQCM--GVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETC---GFQC-LIA 372 (387)
Q Consensus 299 ~~~~~~~~l~~~--~~s~p~l~~l~~~a~~~g~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~---g~~~-~~~ 372 (387)
+|+++|..++.+ ++|+|.+|+|++.+++..+|+|+||||+|||+++++++. +..+++.+++++. ++.+ +.+
T Consensus 886 LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~gAlGaKLTGAGGGGcvI~Lak~~---~~a~~I~~~L~~~~~~~~~~~~~~ 962 (974)
T PRK13412 886 LVGKTWEQNKALDSGTNPAAVEAIIELIKDYTLGYKLPGAGGGGYLYMVAKDP---GAAERIRKILTENAPNPRARFVDM 962 (974)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHcCCcEEEecccCcccEEEEEECCh---hhHHHHHHHHHhcccCCceeEEEE
Confidence 999999999977 999999999999997633999999999999999999763 4456677777664 4444 489
Q ss_pred eecCCceEEEe
Q 045151 373 GIGGTGVEVCF 383 (387)
Q Consensus 373 ~~~~~G~~v~~ 383 (387)
+++.+|++|..
T Consensus 963 ~l~~~G~~is~ 973 (974)
T PRK13412 963 SLSDKGLQVSR 973 (974)
T ss_pred EECCCCeEEec
Confidence 99999999874
No 18
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=100.00 E-value=5e-38 Score=280.50 Aligned_cols=310 Identities=22% Similarity=0.336 Sum_probs=234.5
Q ss_pred ceEEEcCceEEEEecccee------eCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccC
Q 045151 2 EVKARAPGKIILAGEHAVV------HGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHL 75 (387)
Q Consensus 2 ~~~~~APgkv~L~GEh~~~------~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~ 75 (387)
|++.+||-|+.+.|.-+|+ |||.+++++||+|+++.+.+. .++.|++...-. ..+++... +
T Consensus 1 Mii~raPLRItfgGGGTDvepy~~k~GGaVlnatIdky~y~~i~~~----~d~~I~~~~~~~-----~~v~~~~~---~- 67 (333)
T COG2605 1 MIISRAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIYVTIEKG----FDDEIRVRYDRT-----EFVKSYLE---N- 67 (333)
T ss_pred CcccccceEEEecCCCcCchHHHHhcCCEEEEeeeeeEEEEEEccC----CCceEEEecchH-----HhhhhhHh---h-
Confidence 3677899999999998885 699999999999999999874 556666541110 00111100 0
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHH
Q 045151 76 GSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLT 155 (387)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~ 155 (387)
.+ .| .++..++. .| ..+.+..++++...+|+|+|+|||||||+.||++
T Consensus 68 ~h----~~---------~~~~~l~r---------------~~----l~~~g~~~~el~~~~D~P~GSGLGSSSa~vvaLl 115 (333)
T COG2605 68 EH----KP---------LVVESLKR---------------DF----LEFNGGTPIELHTQSDAPPGSGLGSSSAFVVALL 115 (333)
T ss_pred cC----ch---------HHHHHHHH---------------HH----HhhcCCCceEEEEecCCCCCCCCCchHHHHHHHH
Confidence 00 01 11211110 01 1222334489999999999999999999999999
Q ss_pred HHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cceeEeecce--EEEeC-CC--cccccCC--
Q 045151 156 AALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYGNI--IKFRS-GN--MTCIKSN-- 227 (387)
Q Consensus 156 ~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~~~~~~Gg~--i~~~~-~~--~~~l~~~-- 227 (387)
.|+..+-|.. +++ ++||+.|+.+|+...+...|. ||++++|||+ +.|.. ++ +++++..
T Consensus 116 ~a~~~~kg~~-----------~~~---~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFnfMEf~~~~~V~v~pL~i~~e 181 (333)
T COG2605 116 NALHAWKGES-----------LGP---YELAREAYEIEREDLKIVGGKQDQYAAAFGGFNFMEFRGNGEVVVNPLRINRE 181 (333)
T ss_pred HHHHHHhCCC-----------CCH---HHHHHHHHHHHHHHhccccccccHHHHHhCCceEEEEcCCCcEEEeecccchh
Confidence 9999999875 554 678999999999999999998 9999999996 66654 43 4555543
Q ss_pred ----CCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHH
Q 045151 228 ----MPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMN 303 (387)
Q Consensus 228 ----~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~ 303 (387)
...+++|++||+.|.+++++.++.+......+...+.+.+|+++..++.+++-. .|+..|+++|+.+
T Consensus 182 ~~~Ele~~~lL~yTGi~R~Ss~V~~dQ~~~~~~~~~~~~e~~~~mk~~A~~~~~al~~---------nd~~~f~~~l~~g 252 (333)
T COG2605 182 RTAELEARLLLYYTGITRQSSEVIEDQVRNVVDGDEETLEALHEMKALAYEMKDALVR---------NDIPEFGQILDRG 252 (333)
T ss_pred HHHHHHhceEEEEeccccchhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHh---------cchHHHHHHHHhH
Confidence 246899999999999999887655443333222334566777777777777765 6899999999999
Q ss_pred HHHHh--hcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecCCceE
Q 045151 304 QGLLQ--CMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVE 380 (387)
Q Consensus 304 ~~~l~--~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~G~~ 380 (387)
|...+ .-++|+|.+|++.+.|++.| +|+|++|||+||+++.+|++.+ ...++++|+.....+..+.++.+|.+
T Consensus 253 W~~KK~ls~~ISN~~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~p~k----~~~l~r~l~~~~~~~~~~~Fd~~Gsr 328 (333)
T COG2605 253 WEAKKKLSSRISNDAIDRIYELALKNGAYGGKLSGAGGGGFLLFFCDPSK----RNELARALEKEQGFVVDTSFDKEGSR 328 (333)
T ss_pred HHhhhhhccCcCcHHHHHHHHHHHhcCchhceeeccCCccEEEEEeCccc----hHHHHHHHHHhcCCeEEEEecCCCeE
Confidence 99998 45699999999999999999 9999999999999999999854 55677888877767777999999998
Q ss_pred EEe
Q 045151 381 VCF 383 (387)
Q Consensus 381 v~~ 383 (387)
+..
T Consensus 329 ~i~ 331 (333)
T COG2605 329 IIF 331 (333)
T ss_pred EEe
Confidence 764
No 19
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=100.00 E-value=3.6e-37 Score=300.74 Aligned_cols=359 Identities=20% Similarity=0.230 Sum_probs=246.6
Q ss_pred EEcCceEEEEeccceee-CCeeeEeeeccceEEEEEccCCCC--CCCcEEEEecCCC-ceeeeehhhHHhhhccCCCCCC
Q 045151 5 ARAPGKIILAGEHAVVH-GSTAVAACIDLYTYVSLRFPSDSD--DDDTLKLVLKDME-LNFSWSVTRIKATLSHLGSPFP 80 (387)
Q Consensus 5 ~~APgkv~L~GEh~~~~-g~~~l~~ai~~~~~~~v~~~~~~~--~~~~v~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ 80 (387)
++||||+.|.|||+|+. |++++.+|+|.|+++.+++..... ..-+|+|.|++|. ..+.|....-...+..... ..
T Consensus 2 ~sAPGKlliAGgYlVLep~y~aiVval~~r~~a~v~~~~~~~~~~~~~i~v~SpQf~~~~~~y~~~~~~~~~~~~~~-~~ 80 (454)
T TIGR01219 2 ASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEVGAWKWDVRVKSPQFSDREWLYKISLNHLTLQSVSA-SD 80 (454)
T ss_pred cccCceEEEecceEEecCCCcEEEEEecceEEEEEeecccccccCcceEEEeCCCCCCCceEEEEecCCccceeecc-cc
Confidence 68999999999999999 999999999999999997642100 1125788999995 4455654321100110000 00
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHH-HhhhCccCeEEEEEecC-------------------C-
Q 045151 81 STPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLY-TSIIGFKPATVVVTSDL-------------------P- 139 (387)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~i~i~s~i-------------------P- 139 (387)
..+...++.....|.-++. |+... .......+++|+|.++. +
T Consensus 81 ~~~~~~n~fv~~ai~~~~~-----------------y~~~~~~~~~~l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~ 143 (454)
T TIGR01219 81 SRNPFVNPFIQYAIAAVHL-----------------YFDKESLHKLLLQGLDITILGDNAYYSQPESLGTLAPFASITFN 143 (454)
T ss_pred cCCCCCChHHHHHHHHHHH-----------------HHHhccccccccCceEEEEEecCCcccccchhcccccccccccc
Confidence 0011112222222222111 11000 00012557889997776 2
Q ss_pred -------CCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcC-CCcccceeEeec
Q 045151 140 -------LGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGK-PSGLDNTVSTYG 211 (387)
Q Consensus 140 -------~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~-~sG~D~~~~~~G 211 (387)
.+.|||||||++||+++||+.+++....+.. ..+..+..++++.|+++|+.+|...||+ +||.|+++++||
T Consensus 144 ~~~~~e~~K~GLGSSAAvtVa~v~ALl~~~~~~~~~~~-~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~DvAaavyG 222 (454)
T TIGR01219 144 AAEKPEVAKTGLGSSAAMTTALVAALLHYLGVVDLSDP-DKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYG 222 (454)
T ss_pred cccCCCccccCccHHHHHHHHHHHHHHHHhCCcccccc-cccccccccCHHHHHHHHHHHHHhhcCCCCCchhhhhhhcC
Confidence 2699999999999999999999986410000 0000122236788999999999999996 799999999999
Q ss_pred ceEEEe--CC----------------------------CcccccCCCCceEEEEEeCCCCChHHHHHHHHHHHhhChhHH
Q 045151 212 NIIKFR--SG----------------------------NMTCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAM 261 (387)
Q Consensus 212 g~i~~~--~~----------------------------~~~~l~~~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~ 261 (387)
|+++.+ +. .++++++|++++++++||+.+++|+++|+++.++++++|+..
T Consensus 223 gi~Y~rfd~~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~lP~~l~Llvgdtg~~ssT~~lV~~V~~~~~~~p~~s 302 (454)
T TIGR01219 223 SQRYRRFSPELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFSLPPLMNLFMGDPGGGSSTPSMVGKVKKWQMSDPEES 302 (454)
T ss_pred ceEEEecChhhhhhhhccccccchhhhHHHHhccCCCCceeeccCCCCCEEEEEcCCCCcCcHHHHHHHHHHHHHCHHHH
Confidence 954332 11 112455678899999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC-----------------CCC---CcchHHHHHHHHHHHHHHHHHhhc------CCCCH
Q 045151 262 SSVFNAVDSISKELSTIIESPT-----------------PDD---LSITEKEERLEELMEMNQGLLQCM------GVSHS 315 (387)
Q Consensus 262 ~~~~~~i~~i~~~~~~~l~~~~-----------------~~~---~~~~~d~~~l~~~~~~~~~~l~~~------~~s~p 315 (387)
++++++|......+...|.... ..+ ....+++..+.+.|..+...|+.+ .+.+|
T Consensus 303 ~~i~~~l~~aN~~~~~~l~~l~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~ 382 (454)
T TIGR01219 303 RENWQNLSDANLELETKLNDLSKLAKDHWDVYLRVIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQITEEASVDIEPE 382 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhhhhhccccchhcccccHHHHHHHHHHHHHHHHHhhHhcCCcccCH
Confidence 7777777766444433332100 000 001126777888898888888744 36799
Q ss_pred HHHHHHHHHhhc-C-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecCCceEEEec
Q 045151 316 SIETVLRTTLKF-K-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEVCFG 384 (387)
Q Consensus 316 ~l~~l~~~a~~~-g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~G~~v~~~ 384 (387)
++.+|++.+.+. | +|++++|||||+|+++|+.++. +..+.+.+.|+..|...+.++...+|++.+.+
T Consensus 383 ~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~--~~~~~~~~~W~~~~V~pL~v~~~~~G~~~e~~ 451 (454)
T TIGR01219 383 SQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDV--DSGTKLTQAWSSHNVLALDVREAPHGVCLESD 451 (454)
T ss_pred HHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCCh--HHHHHHHHHHhhCCEEEEeccccCCcccccCC
Confidence 999999999987 5 8999999999999999988752 35788999999999999999999999998764
No 20
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.97 E-value=3e-30 Score=243.15 Aligned_cols=274 Identities=16% Similarity=0.203 Sum_probs=194.9
Q ss_pred CceEEEcCceEEE----Eeccce-eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccC
Q 045151 1 MEVKARAPGKIIL----AGEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHL 75 (387)
Q Consensus 1 ~~~~~~APgkv~L----~GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~ 75 (387)
|+++++||||++| .|+|.| ||...+|.+|||+|.++.+++. .+..+++...+.. .+.
T Consensus 1 ~~~~~~apakinl~l~i~g~~~dg~h~l~si~~ai~l~~~v~v~~~----~~~~~~i~~~~~~---------~~~----- 62 (286)
T PRK00128 1 MKILEKAPAKINLSLDVLGKREDGYHEVEMIMQTIDLADRLEIEKL----KEDGIVVESNNRY---------VPN----- 62 (286)
T ss_pred CeEEEeccceEEEEeecCccCCCCcceeheeeEecCCCcEEEEEEC----CCCCEEEEeCCCC---------CCC-----
Confidence 6788999999999 799999 8899999999999999999864 2334555432110 000
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHH
Q 045151 76 GSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLT 155 (387)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~ 155 (387)
++.+.+.+++..+ .. .....++++|++.++||.++|||||||+++|++
T Consensus 63 -------------~~~n~~~~~~~~~----------------~~---~~~~~~~~~i~i~~~iP~~~GLGSSsa~a~a~~ 110 (286)
T PRK00128 63 -------------DERNLAYKAAKLL----------------KE---RYNIKQGVSITIDKNIPVAAGLAGGSSDAAATL 110 (286)
T ss_pred -------------CCCcHHHHHHHHH----------------HH---hcCCCCCeEEEEEcCCCccccchHHHHHHHHHH
Confidence 0112333322211 10 001235799999999999999999999999999
Q ss_pred HHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-cccccCCCCceEE
Q 045151 156 AALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-MTCIKSNMPLKML 233 (387)
Q Consensus 156 ~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~~~l~~~~~~~~l 233 (387)
.|++.+++.+ +++ ++++++|.++| .|++++++||++.+. .++ +.+++.++++.++
T Consensus 111 ~al~~~~~~~-----------l~~---~~l~~~a~~~g---------~dv~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~v 167 (286)
T PRK00128 111 RGLNKLWNLG-----------LSL---EELAEIGLEIG---------SDVPFCIYGGTALATGRGEKITPLKSPPSCWVV 167 (286)
T ss_pred HHHHHHhcCC-----------cCH---HHHHHHHHHhC---------CCCCeEeeCCeEEEecCCcccccCCCCCCcEEE
Confidence 9999999976 554 55677776654 599999999987665 333 5556555678899
Q ss_pred EEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCC-
Q 045151 234 ITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGV- 312 (387)
Q Consensus 234 l~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~- 312 (387)
+++|+...+|+++++.+...+...+ ....+..++.. +|++.++++|. +.++.+.+
T Consensus 168 v~~p~~~~~T~~~~~~~~~~~~~~~------------~~~~~~~~l~~---------~d~~~~~~~~~---n~l~~~~~~ 223 (286)
T PRK00128 168 LAKPDIGVSTKDVYKNLDLDKISHP------------DTEKLIEAIEE---------GDYQGICANMG---NVLENVTLK 223 (286)
T ss_pred EEcCCCCCCHHHHHhcCccccccCc------------chHHHHHHHhc---------CCHHHHHHhcc---CcHHHHHHh
Confidence 9999999999987654321110001 12234455554 78888888874 34454444
Q ss_pred CCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecC
Q 045151 313 SHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGG 376 (387)
Q Consensus 313 s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~ 376 (387)
..|+++++++.+++.| +|++|||+| ||+++++++ ++..+++.+.+++.+..++++++.+
T Consensus 224 ~~p~l~~l~~~~~~~Ga~g~~lSGsG--~sv~~l~~~---~~~~~~i~~~l~~~~~~~~~~~~~~ 283 (286)
T PRK00128 224 KYPEIAKIKERMLKFGADGALMSGSG--PTVFGLFDD---ESRAQRIYNGLKGFCKEVYLVRTLG 283 (286)
T ss_pred hChHHHHHHHHHHhcCCCeeEEcccC--ccEEEEeCC---HHHHHHHHHHhHhhcCcEEEEeeec
Confidence 3899999999999999 999999999 999999987 3445678888877766778877654
No 21
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.97 E-value=5.5e-30 Score=243.98 Aligned_cols=292 Identities=15% Similarity=0.128 Sum_probs=198.1
Q ss_pred ceEEEcCceEEE----Eeccce-eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCC
Q 045151 2 EVKARAPGKIIL----AGEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLG 76 (387)
Q Consensus 2 ~~~~~APgkv~L----~GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~ 76 (387)
+++++|||||+| .|+|.| ||...++.++||+|.++.+++. ++..+++...... .+.
T Consensus 3 ~~~~~apakiNL~L~i~g~~~dGy~~l~~~~~~i~l~d~v~v~~~----~~~~~~~~~~~~~----~~~----------- 63 (312)
T PRK02534 3 SYTLIAPAKINLHLEILGDRPDGFHELAMVMQSIDLADRLELRNN----GDGTIRLHCDHPQ----LST----------- 63 (312)
T ss_pred eEEEEeceEEEeccccCccCCCCCCceEEEEEECCCCCEEEEEEC----CCCcEEEEECCCC----CCC-----------
Confidence 467899999999 699999 8888999999999999999874 3344555332100 000
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHH
Q 045151 77 SPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTA 156 (387)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~ 156 (387)
+..+++.++++.+ ... ......+++|+|.++||.++|||||||+++|++.
T Consensus 64 ------------~~~n~~~~~~~~~----------------~~~--~~~~~~~~~i~i~~~IP~~~GLGSssa~~~A~~~ 113 (312)
T PRK02534 64 ------------DDDNLIYRAAQLL----------------RKR--FPFAEGGVDITLEKRIPIGAGLAGGSTDAAAVLV 113 (312)
T ss_pred ------------CchhHHHHHHHHH----------------HHH--hCCCCCCeEEEEecCCCCcCCccHHHHHHHHHHH
Confidence 0113333332211 110 0112258999999999999999999999999999
Q ss_pred HHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-cccccCCCCceEEE
Q 045151 157 ALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-MTCIKSNMPLKMLI 234 (387)
Q Consensus 157 Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~~~l~~~~~~~~ll 234 (387)
|++.+++.+ +++ ++++++|.+.| .|++++.+||++... .++ +++++.++++.+++
T Consensus 114 al~~~~~~~-----------l~~---~~l~~~a~~~g---------~dv~~~~~GG~~~~~~~g~~~~~~~~~~~~~~vv 170 (312)
T PRK02534 114 GLNLLWGLG-----------LTQ---PELESLAAELG---------SDVPFCIAGGTQLCFGRGEILEPLPDLDGLGVVL 170 (312)
T ss_pred HHHHHhCCC-----------cCH---HHHHHHHHHhC---------CCCcEEeECCeEEEECCCCEeEECCCCCCcEEEE
Confidence 999999876 554 55677776554 488999999985543 444 66777677899988
Q ss_pred E-EeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHH--HHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHh-hc
Q 045151 235 T-NTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISK--ELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQ-CM 310 (387)
Q Consensus 235 ~-~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~-~~ 310 (387)
+ +|+...+|+++++.+++.........+...+.++++.+ .+...+.. +|++.+++.| |+.++ ..
T Consensus 171 ~~~p~~~~~T~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~---------~d~~~~~~~~---~n~l~~~~ 238 (312)
T PRK02534 171 AKYPSLSVSTPWAYKTYRQQFGDTYLSDEEDFEQRRQALRSGPLLQAISA---------KDPPPIAQLL---HNDLEKVV 238 (312)
T ss_pred EECCCCCccHHHHHHHHhhhcccccccCcccccccccccchhHHHHhhhc---------cCHHHHHHhh---hCchHHHh
Confidence 7 79999999998766543321100000001122222221 12334443 6788887765 55556 33
Q ss_pred CCCCHHHHHHHHHHh-hcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHH----CCceEEEeeecCCceEEE
Q 045151 311 GVSHSSIETVLRTTL-KFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELET----CGFQCLIAGIGGTGVEVC 382 (387)
Q Consensus 311 ~~s~p~l~~l~~~a~-~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~----~g~~~~~~~~~~~G~~v~ 382 (387)
....|++.++++.++ +.| +++.|||+| +|+|+++++. +.++++.+++++ .+..+++++++++|++|+
T Consensus 239 ~~~~~~i~~~~~~l~~~~Ga~~~~lSGsG--ptv~~l~~~~---~~a~~~~~~l~~~~~~~~~~v~i~~~~n~G~~v~ 311 (312)
T PRK02534 239 LPEYPQVAKLLELLSSLPGCLGTMMSGSG--PTCFALFESQ---EQAEQALEQVREAFADPGLDAWVCQFISHGIQLE 311 (312)
T ss_pred HhcChHHHHHHHHHHhccCCCeeEEECcC--cceEEEeCCH---HHHHHHHHHHHHHhccCceEEEEEEecCCCceec
Confidence 336889999888887 888 999999988 9999999873 233444444443 345799999999999886
No 22
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2e-29 Score=240.20 Aligned_cols=323 Identities=19% Similarity=0.217 Sum_probs=199.1
Q ss_pred ceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCcee---eeehhhHHhhhccCCCC
Q 045151 2 EVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNF---SWSVTRIKATLSHLGSP 78 (387)
Q Consensus 2 ~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~---~~~l~~~~~~~~~~~~~ 78 (387)
+..+++||||+|+|||.||+++.|++||||..+.+.+.+. ++..+.|...+++..| ++++.....
T Consensus 39 ~~~a~~PgRVnLiGEHiDy~~~sVlpmaid~~~l~~~~~~----~d~~~sl~~tN~~~~f~~~~~~~p~~~~-------- 106 (489)
T KOG0631|consen 39 VFVARAPGRVNLIGEHIDYCGYSVLPMAIDVDTLIAVAPS----DDGIVSLRLTNFNPDFIYFKYPLPSIVW-------- 106 (489)
T ss_pred eEEEecCCceecccceeeecCceeeeEEeeeeeEEEEEEc----CCCceeEEEecCCCccceeeccCCchhc--------
Confidence 3679999999999999999999999999999999999885 6666566666664432 333322111
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHH-hhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHH
Q 045151 79 FPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYT-SIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAA 157 (387)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~A 157 (387)
+..| ...+|.+|+..-+. |++.++...- +.....|+.+..++++|.|+||+||||.+++.+.|
T Consensus 107 -~I~~--~~~~w~ny~~C~~~-------------g~h~~~~~~~~~~~~~vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA 170 (489)
T KOG0631|consen 107 -QIDP--DVSKWENYFYCGMK-------------GFHEYIKRKPVRFEPPVGLSILNDGSVPTGSGLSSSAAWLCAAALA 170 (489)
T ss_pred -ccCC--CccchhhhhccchH-------------HHHHHHhccccccCCCcceEEEecCCCCCCCCcchhHHHHHHHHHH
Confidence 1112 34689999832111 2222220000 00112488999999999999999999999999999
Q ss_pred HHHhc-CCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCc-ccceeEeecc---eEEEe----CCCcccccCCC
Q 045151 158 LLGSL-NSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSG-LDNTVSTYGN---IIKFR----SGNMTCIKSNM 228 (387)
Q Consensus 158 l~~~~-~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG-~D~~~~~~Gg---~i~~~----~~~~~~l~~~~ 228 (387)
...+. |-+. . ..+ .+++++...+|.. .|.++| +||+++++|- ++..+ +.....++++.
T Consensus 171 ~~~~~~gpn~-~--------~~k---kd~~~i~~~ae~~-~G~~~gGmdq~asvl~~~~~Al~v~~~~~Pf~~~~lk~~~ 237 (489)
T KOG0631|consen 171 TLKLNLGPNF-I--------ISK---KDLATITVVAESY-IGLNSGGMDQAASVLAEKGHALLVDPYFTPFRRSMLKLPD 237 (489)
T ss_pred HHHHhcCCCc-c--------cch---hhhhcceEEeecc-cCcCCCcHHHHHHHHHhcCceEEecccCCccccccccCCC
Confidence 88877 5430 0 223 3446677777764 455544 6999888773 33333 22334455544
Q ss_pred CceEEEEEeCCCCChHH-HHHHHHHH-----------------------------Hh---hChhHHH-------------
Q 045151 229 PLKMLITNTKVGRNTRA-LVAGVSER-----------------------------SM---RHPDAMS------------- 262 (387)
Q Consensus 229 ~~~~ll~~t~~~~~T~~-~~~~~~~~-----------------------------~~---~~~~~~~------------- 262 (387)
.-.|++.++-...+... +...++.+ +. ..+..++
T Consensus 238 ~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ia~~~la~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~v~~~~ 317 (489)
T KOG0631|consen 238 GGVFVIANSLVESNKAETAETNYNLRVVEGTIAAGELAAKILVELPAYILRYQLQRAWRGDIGEGYERAEEMLGLVEESL 317 (489)
T ss_pred CceEEEechhhhhcchhhhhhhhhceeEeeehhhHHHHHHhhcccHHHHHhhhhhhccccccchhHHHHHHHHHHHHhhc
Confidence 45777776654443210 00000000 00 0000000
Q ss_pred --------H-----------H-----------------HHHHHHHHHHHHHHHcCCC---CCCCcchHHHHHHHHHHHHH
Q 045151 263 --------S-----------V-----------------FNAVDSISKELSTIIESPT---PDDLSITEKEERLEELMEMN 303 (387)
Q Consensus 263 --------~-----------~-----------------~~~i~~i~~~~~~~l~~~~---~~~~~~~~d~~~l~~~~~~~ 303 (387)
+ + ..+-.++..++.+.++... .......+.+..||++|+++
T Consensus 318 ~~e~f~~ee~~~~l~~~~~~f~~~~~T~~~v~~~~~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d~~~~~~g~LmneS 397 (489)
T KOG0631|consen 318 KPEGFNIEEVARALGLDTEEFLQSLLTLAAVDLQVKKLYQRAKHVYSEALRVLQEEKLCARAPGRADGFLADFGRLMNES 397 (489)
T ss_pred CcCCCCHHHHHHHhccchHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHhhhh
Confidence 0 0 0000111111122111100 00001124578899999999
Q ss_pred HHHHh-hcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHC
Q 045151 304 QGLLQ-CMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETC 365 (387)
Q Consensus 304 ~~~l~-~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~ 365 (387)
|...+ .+..|||++++|++++++.| +|+++||||||||.+++++.+..+.....+.+.+.++
T Consensus 398 ~~Sc~~~yEcscpel~qL~kiala~g~~gaRlTGaGwGGc~v~lvp~d~~~~~~~~~~~~~Y~k 461 (489)
T KOG0631|consen 398 HRSCDVLYECSCPELDQLCKIALANGGVGARLTGAGWGGCTVALVPADLVDFAVAALKEIYYEK 461 (489)
T ss_pred hHHHHHHHhcCCHhHHHHHHHHHhcCCccceeeccccccceeeeccccchHHHHHhhhhhhhcc
Confidence 99999 89999999999999999998 9999999999999999999877777777766655443
No 23
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.96 E-value=8e-27 Score=219.75 Aligned_cols=260 Identities=17% Similarity=0.197 Sum_probs=173.1
Q ss_pred EEEcCceEEEEecccee-eCCe----eeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCC
Q 045151 4 KARAPGKIILAGEHAVV-HGST----AVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSP 78 (387)
Q Consensus 4 ~~~APgkv~L~GEh~~~-~g~~----~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 78 (387)
.++|||||+|+|||+++ .+|+ ++.++|+++.++.+++. +++.+++.+.+.. .+.
T Consensus 3 ~~~apaKiNL~l~i~~~r~dGyH~l~sl~~~i~l~d~v~i~~~----~~~~i~~~~~~~~----~~~------------- 61 (293)
T TIGR00154 3 VFPSPAKLNLFLYITGKRPDGYHELQTLMQFLDLGDKIIISVR----SDDDIRLLKGDFD----VPL------------- 61 (293)
T ss_pred eEeecccEEEEEecCCcCCCCCcceEEEEEEeccCcEEEEEEC----CCCcEEEeeCCCC----CCC-------------
Confidence 56899999999999976 3555 99999999999999874 3445666443221 000
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHh-hhCccCeEEEEEecCCCCCCCChhHHHHHHHHHH
Q 045151 79 FPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTS-IIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAA 157 (387)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~A 157 (387)
++ +++.++++.+ ...... .....+++|.++++||.++|||||||.++|++.|
T Consensus 62 ---------~~--nlv~~a~~~l----------------~~~~~~~~~~~~~~~i~i~~~iP~~aGLGsssa~aaa~l~a 114 (293)
T TIGR00154 62 ---------EE--NLIYRAAQLL----------------KNFANSKIKSLDGANIEIDKNIPMGAGLGGGSSDAATVLVG 114 (293)
T ss_pred ---------CC--cHHHHHHHHH----------------HHHhcccccCCCCeEEEEeccCCCCCCcchhHHHHHHHHHH
Confidence 01 3444433321 110000 0024589999999999999999999999999999
Q ss_pred HHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-cccccCCCCceEEEE
Q 045151 158 LLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-MTCIKSNMPLKMLIT 235 (387)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~~~l~~~~~~~~ll~ 235 (387)
++.+++.+ +++ ++++++|... |.|++++++||..... .++ +++++.++++.++++
T Consensus 115 l~~~~~~~-----------l~~---~~l~~la~~l---------g~Dv~~~~~gg~~~~~g~ge~~~~l~~~~~~~~vl~ 171 (293)
T TIGR00154 115 LNQLWQLG-----------LSL---EELAELGLTL---------GADVPFFVSGHAAFATGVGEIITPFEDPPEKWVVIA 171 (293)
T ss_pred HHHHhCCC-----------cCH---HHHHHHHHHh---------CCCcceEEECCeEEEEecCcEEEECCCCCCcEEEEE
Confidence 99999875 554 4567777654 3599999999987665 454 556655567889999
Q ss_pred EeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcC-CCC
Q 045151 236 NTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMG-VSH 314 (387)
Q Consensus 236 ~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~-~s~ 314 (387)
+|+...+|+++++.+. .....+..... ....+.. ++++.+.. ..|+.++... ..+
T Consensus 172 ~p~~~~sT~~~~~~l~-~~~~~~~~~~~-----------l~~~~~~---------~~~~~~~~---~~~ndle~~~~~~~ 227 (293)
T TIGR00154 172 KPHVSISTPVVYQAYK-LPRNTPKRAKE-----------WLKKISL---------ECLQLLDS---NGLNDLEKVALKRH 227 (293)
T ss_pred cCCCCcChHHHHHhhh-hcccCcchhHH-----------HHHHHhh---------ccHHHHhh---hhcCccHHHHHhcC
Confidence 9999999999887553 11111111111 1112211 12222211 1244455322 368
Q ss_pred HHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 045151 315 SSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELE 363 (387)
Q Consensus 315 p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~ 363 (387)
|+++++++.+++.| ++++||||| +|+|++++++ +.++++.+.++
T Consensus 228 p~l~~i~~~l~~~Ga~~a~mSGSG--~tvf~l~~~~---~~a~~~~~~~~ 272 (293)
T TIGR00154 228 TEVAQALNWLLEYGLAPERLSGSG--ACVFALFDME---SEAEQVLEQAP 272 (293)
T ss_pred HHHHHHHHHHHhCCCCeEEEeccc--cceEEEeCCH---HHHHHHHHHhH
Confidence 99999999999999 999999997 9999999873 33445555443
No 24
>PLN02451 homoserine kinase
Probab=99.96 E-value=9.3e-27 Score=224.98 Aligned_cols=225 Identities=19% Similarity=0.216 Sum_probs=166.9
Q ss_pred ccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccce
Q 045151 127 FKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNT 206 (387)
Q Consensus 127 ~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~ 206 (387)
..|++|+|+++||.++|||||||+++|++.|++.+++.+ +++ ++++++|..+|..++|. ++|+.
T Consensus 132 ~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~-----------ls~---~eL~~la~~~E~~v~g~--h~Dnv 195 (370)
T PLN02451 132 SVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSP-----------LGK---DDLVLAGLESEAKVSGY--HADNI 195 (370)
T ss_pred CCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCC-----------CCH---HHHHHHHHHHhchhcCC--Cccch
Confidence 358999999999999999999999999999999999976 655 56789999999887764 46885
Q ss_pred -eEeecceEEEeC-C--CcccccCC--CCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHc
Q 045151 207 -VSTYGNIIKFRS-G--NMTCIKSN--MPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIE 280 (387)
Q Consensus 207 -~~~~Gg~i~~~~-~--~~~~l~~~--~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~ 280 (387)
++++||++.+.. . ++.+++++ ++++++++.|+.+.+|+++++.+.+.... . +.. ..+..+ ..+..++.
T Consensus 196 a~a~~GG~v~~~~~~~~~~~~~~~p~~~~~~~Vlv~P~~~~sT~~ar~~lp~~~~~-~---~~v-~~~~~~-~~l~~al~ 269 (370)
T PLN02451 196 APALMGGFVLIRSYEPLHLIPLRFPSAKDLFFVLVSPDFEAPTKKMRAALPKEIPM-K---HHV-WNCSQA-AALVAAIL 269 (370)
T ss_pred hHhhcCCEEEEEecCCCeEEEeecCCCCCeEEEEEcCCCCccHHHHHHHHhhhcch-h---hHH-HHHHHH-HHHHHHHH
Confidence 479999877753 2 23444444 57999999999999999987654322111 0 111 111111 12344555
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCC-CCHHHHHHH
Q 045151 281 SPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTL-LSATVVEKV 358 (387)
Q Consensus 281 ~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~-~~~~~~~~i 358 (387)
. +|++.++++|+..+.........+|+++++++.+++.| +|++|||+| +|+|++++++ .+++..+++
T Consensus 270 ~---------~d~~~l~~~m~nD~~~e~~r~~~~P~l~~l~~~~~~~GA~ga~mSGSG--ptvfal~~~~~~a~~i~~~l 338 (370)
T PLN02451 270 Q---------GDAVLLGEALSSDKIVEPTRAPLIPGMEAVKKAALEAGAYGCTISGAG--PTAVAVIDDEEKGEEVGERM 338 (370)
T ss_pred c---------CCHHHHHHHHHHHHHhHHHHhhhCccHHHHHHHHHHCCCeEEEEEccc--hheEEEEcCHHHHHHHHHHH
Confidence 4 78899999987443333344567999999999999999 999999998 8999999863 344556666
Q ss_pred HHHHHHC---CceEEEeeecCCceEEEec
Q 045151 359 TTELETC---GFQCLIAGIGGTGVEVCFG 384 (387)
Q Consensus 359 ~~~~~~~---g~~~~~~~~~~~G~~v~~~ 384 (387)
.+.|++. ...+++++++++|++|...
T Consensus 339 ~~~~~~~~~~~~~~~~~~~d~~Ga~v~~~ 367 (370)
T PLN02451 339 VEAFRKAGNLKATASVKKLDRVGARLVES 367 (370)
T ss_pred HHHHHHhcCCCceEEEeccCCCCeEEEec
Confidence 6666554 3589999999999999754
No 25
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.94 E-value=6.1e-25 Score=208.33 Aligned_cols=285 Identities=17% Similarity=0.154 Sum_probs=192.2
Q ss_pred EEEcCceEEEE----eccce-eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCC
Q 045151 4 KARAPGKIILA----GEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSP 78 (387)
Q Consensus 4 ~~~APgkv~L~----GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 78 (387)
...||+||+|+ |..-| ||.-..+-++||+|-++.+++. +...+++..... +..+..
T Consensus 2 ~~~a~aKiNl~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~----~~~~i~~~~~~~--------~~~~~~------- 62 (300)
T PRK03188 2 TVRAPAKVNLHLGVGPLRDDGYHELATVFQAVSLYDEVTVTAA----DVLSVEVSGEGA--------DQVPTD------- 62 (300)
T ss_pred eEeecceEEEeeccCCcCCCCccchHhhheehhhccEEEEEEC----CCcEEEEecCCc--------cCCCCC-------
Confidence 46899999998 55554 4566788899999999999763 222222211100 000100
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHH
Q 045151 79 FPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAAL 158 (387)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al 158 (387)
...-....++.+.+.+ ...++++|+|+++||.++|||||||+++|++.|+
T Consensus 63 -------~~nl~~~~~~~~~~~~-----------------------~~~~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al 112 (300)
T PRK03188 63 -------ESNLAWRAAELLAEHV-----------------------GRAPDVHLHIDKGIPVAGGMAGGSADAAAALVAC 112 (300)
T ss_pred -------CccHHHHHHHHHHHHh-----------------------CCCCCeEEEEEcCCcccCcchHHHHHHHHHHHHH
Confidence 0001112222222111 1235899999999999999999999999999999
Q ss_pred HHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-cccccCCCCceEEEEE
Q 045151 159 LGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-MTCIKSNMPLKMLITN 236 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~~~l~~~~~~~~ll~~ 236 (387)
+.+++.+ +++ ++++++|.++ |.|++++.+||++... .++ +++++.++++.++++.
T Consensus 113 ~~~~g~~-----------ls~---~el~~~a~~i---------g~dv~~~~~GG~~~~~~~g~~~~~~~~~~~~~~~lv~ 169 (300)
T PRK03188 113 DALWGLG-----------LSR---DELLELAAEL---------GSDVPFALLGGTALGTGRGEQLAPVLARGTFHWVLAF 169 (300)
T ss_pred HHHhCCC-----------cCH---HHHHHHHHHh---------CCCcchhhcCCeEEEEecCCEEEECCCCCCcEEEEEe
Confidence 9999976 655 4567777654 3598999999987665 333 4555445567777777
Q ss_pred eCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCC-CCH
Q 045151 237 TKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGV-SHS 315 (387)
Q Consensus 237 t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~-s~p 315 (387)
++...+|+++++.+........ . .. ..+...+..++.. +|++.+++.|+. .++.+.+ .+|
T Consensus 170 p~~~~sT~~~~~~l~~~~~~~~--~----~~-~~~~~~~~~al~~---------~d~~~l~~~~~n---~le~~~~~~~p 230 (300)
T PRK03188 170 ADGGLSTPAVFRELDRLREAGD--P----PR-LGEPDPLLAALRA---------GDPAQLAPLLGN---DLQAAALSLRP 230 (300)
T ss_pred CCCCCCHHHHHHhchhhhcccc--c----cc-cccHHHHHHHHHc---------CCHHHHHHHhhC---cCHHHHHHhCc
Confidence 8888899988765543221100 0 00 1112345566665 789999998842 2232222 389
Q ss_pred HHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCc--eEEEeeecCCceEEEec
Q 045151 316 SIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGF--QCLIAGIGGTGVEVCFG 384 (387)
Q Consensus 316 ~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~--~~~~~~~~~~G~~v~~~ 384 (387)
+++++++.+++.| +|++|||+| +++++++++ ++..+++.+.+++.|. .+++++..+.|++|...
T Consensus 231 ~l~~l~~~~~~~Galga~lSGsG--~tv~~l~~~---~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 297 (300)
T PRK03188 231 SLRRTLRAGEEAGALAGIVSGSG--PTCAFLCAD---ADSAVDVAAALSGAGVCRTVRVATGPVPGARVVSG 297 (300)
T ss_pred hHHHHHHHHHHCCCCEEEEEccc--cceEEEeCC---HHHHHHHHHHHHhcCcceeEEEeeccccceEeccc
Confidence 9999999999999 999999998 789999987 4556788888888764 67888889999998753
No 26
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.94 E-value=2.9e-24 Score=198.03 Aligned_cols=285 Identities=21% Similarity=0.231 Sum_probs=193.1
Q ss_pred CceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCC
Q 045151 1 MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFP 80 (387)
Q Consensus 1 ~~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (387)
|++++++|+..-=+|- |.-++.+|+++|-.+.+... . +.++|....-. .+.+|.
T Consensus 2 ~~~~v~aPASSANlGp-----GFD~lGlAl~~~~~~~v~~~----~-~~~~i~~~g~~------~~~iP~---------- 55 (299)
T COG0083 2 LMMKVRVPASSANLGP-----GFDVLGLALDLYNDVVVVEV----V-DKFEIEVEGEG------ADKIPL---------- 55 (299)
T ss_pred ceEEEEEeecccccCC-----CccceeeeccccCcEEEEEe----c-CcEEEEEeccc------ccCCCC----------
Confidence 4567888887433332 66788999999999988763 2 24444332210 011110
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 045151 81 STPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLG 160 (387)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~ 160 (387)
.| +.-..+.++.+++.++ ...+++|+++++||.++|||||||.+||.+.|+|+
T Consensus 56 -~~---~n~~~~~~~~~~~~~~-----------------------~~~~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~ 108 (299)
T COG0083 56 -DP---ENLVYQAALKFLEALG-----------------------IEAGVKIRIEKGIPLGRGLGSSAASIVAALAAANE 108 (299)
T ss_pred -Cc---ceeHHHHHHHHHHHhC-----------------------CCccEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 11 1111233333333211 12238999999999999999999999999999999
Q ss_pred hcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccc-eeEeecceEEEeC-CC--cccccCCCCceEEEEE
Q 045151 161 SLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDN-TVSTYGNIIKFRS-GN--MTCIKSNMPLKMLITN 236 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~-~~~~~Gg~i~~~~-~~--~~~l~~~~~~~~ll~~ 236 (387)
+++.+ |++ +++.++|.+.|. +.|| ++|++||+..+.. .. ..+++++.+++++++.
T Consensus 109 l~~~~-----------L~~---~~ll~~a~~~Eg-------HpDNVapa~lGG~~l~~~~~~~~~~~v~~~~~~~~v~~i 167 (299)
T COG0083 109 LAGLP-----------LSK---EELLQLALEIEG-------HPDNVAPAVLGGLVLVEEESGIISVKVPFPSDLKLVVVI 167 (299)
T ss_pred HhcCC-----------CCH---HHHHHHHHHhcC-------CCchHHHHhhCCEEEEeecCCceEEEccCCcceEEEEEe
Confidence 99986 665 556788887773 3698 6799999755543 33 3556777899999999
Q ss_pred eCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHH--HHHHHHcCCCCCCCcchHHHHHHHHHHHH-HHHHHh-hcCC
Q 045151 237 TKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISK--ELSTIIESPTPDDLSITEKEERLEELMEM-NQGLLQ-CMGV 312 (387)
Q Consensus 237 t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~~~~~l~~~~~~~~~~~~d~~~l~~~~~~-~~~~l~-~~~~ 312 (387)
|+.+.+|+++++- .|+.+. .-+.+.++++ -+..++.. +|.+.+..+|++ -|+..| .+
T Consensus 168 P~~e~sT~~aR~v-------LP~~~~-~~daV~n~s~~a~lv~al~~---------~~~~l~~~~~~D~ihepyR~~L-- 228 (299)
T COG0083 168 PNFEVSTAEARKV-------LPKSYS-RKDAVFNLSRAALLVAALLE---------GDPELLRAMMKDVIHEPYRAKL-- 228 (299)
T ss_pred CCccccHHHHHHh-------ccccCC-HHHHHHHHHHHHHHHHHHHc---------CCHHHHHHHhccccchhhhhhh--
Confidence 9999999887432 233221 1223333332 23555554 566666676754 366666 44
Q ss_pred CCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCc--eEEEeeecCCceEEE
Q 045151 313 SHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGF--QCLIAGIGGTGVEVC 382 (387)
Q Consensus 313 s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~--~~~~~~~~~~G~~v~ 382 (387)
.|.+.++.+.+.+.| +|+.+|||| +++++++++. .++....+.+.+.+.++ .+++++.+++|+++.
T Consensus 229 -~P~~~~v~~~a~~~gA~g~~lSGAG--PTi~al~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~v 297 (299)
T COG0083 229 -VPGYAEVREAALEAGALGATLSGAG--PTVFALADES-DAEKAAALLEELYEQGIKGRVHILALDSDGARVV 297 (299)
T ss_pred -CccHHHHHHHHhhCCceEEEEecCC--CeEEEEeccc-hhhHHHHHHHHHHHhCCcceEEEEeecCCcceEe
Confidence 789999999999999 999999999 9999999986 44556666666666554 689999999997654
No 27
>PRK01123 shikimate kinase; Provisional
Probab=99.93 E-value=2.3e-24 Score=202.31 Aligned_cols=204 Identities=17% Similarity=0.190 Sum_probs=145.1
Q ss_pred cCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCC-Ccc-cc
Q 045151 128 KPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKP-SGL-DN 205 (387)
Q Consensus 128 ~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~-sG~-D~ 205 (387)
.+++|+++++||.++|||||||+++|++.|++.+++.+ +++ ++++++|..+|...++.. .+. |+
T Consensus 74 ~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~-----------l~~---~el~~la~~~e~~~~~~~~g~~~d~ 139 (282)
T PRK01123 74 YGATVRTKSEIPLASGLKSSSAAANATVLATLDALGED-----------LDD---LDILRLGVKASRDAGVTVTGAFDDA 139 (282)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCC-----------CCH---HHHHHHHHHhhccccccccCchhHH
Confidence 48999999999999999999999999999999999975 554 667899999998877643 344 77
Q ss_pred eeEeecceEEEeCCCcccc-cCCCCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCC
Q 045151 206 TVSTYGNIIKFRSGNMTCI-KSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTP 284 (387)
Q Consensus 206 ~~~~~Gg~i~~~~~~~~~l-~~~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~ 284 (387)
++++|||++.....+...+ ..+.+++++++.|+.+.+|.+..... +..+..+.+.+.++++.
T Consensus 140 ~~~~~GG~~~~~~~~~~~~~~~~~~~~~vv~~p~~~~~T~~~r~~~--------------l~~~~~~~d~~~~~~~~--- 202 (282)
T PRK01123 140 CASYFGGVTVTDNREMKLLKRDEVELDVLVLIPPEGAFSASADVER--------------MKLIAPYVDMAFELALD--- 202 (282)
T ss_pred HHHHhCCEEEEcCCCceEEEEecCCcEEEEEECCCCcchhhhhhhh--------------chhcCcHHHHHHHHHhh---
Confidence 8999999976654332111 22345899999999999987642211 11222223333444433
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 045151 285 DDLSITEKEERLEELMEMNQGLLQ-CMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTEL 362 (387)
Q Consensus 285 ~~~~~~~d~~~l~~~~~~~~~~l~-~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~ 362 (387)
+|+ .++|+.++..++ .+++++ +++..+++.| +|+++||+| ||+++|++.+. .+++.+++
T Consensus 203 ------~~l---~~~~~~~~l~~~~~l~~~~----~~i~~a~~~Ga~ga~lSGaG--ptv~al~~~~~----~~~v~~~l 263 (282)
T PRK01123 203 ------GEY---FKAMTLNGLLYSSALGFPT----EPALEALEAGAVGVGLSGTG--PSYVAIVDEED----PEEVKEAW 263 (282)
T ss_pred ------ccH---HHHHHhCCchhhhhhCCCh----HHHHHHHHCCCeEEEEecCC--CeEEEEeCCCC----HHHHHHHH
Confidence 444 466666543343 565653 3355567888 999999876 99999998743 34566666
Q ss_pred HHCCceEEEeeecCCceEEE
Q 045151 363 ETCGFQCLIAGIGGTGVEVC 382 (387)
Q Consensus 363 ~~~g~~~~~~~~~~~G~~v~ 382 (387)
++. +++++++++++|++|+
T Consensus 264 ~~~-~~~~~~~~~~~G~~v~ 282 (282)
T PRK01123 264 EKY-GKVIVTKINNEGARIL 282 (282)
T ss_pred HhC-CEEEEeeecCCCceeC
Confidence 666 7999999999999874
No 28
>PRK01212 homoserine kinase; Provisional
Probab=99.93 E-value=7.1e-24 Score=201.28 Aligned_cols=216 Identities=17% Similarity=0.124 Sum_probs=155.2
Q ss_pred cCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCccccee
Q 045151 128 KPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTV 207 (387)
Q Consensus 128 ~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~ 207 (387)
++++|+|+++||.++|||||||+++|++.|++++++.+ +++ ++++++|..+|. ++-|+++
T Consensus 80 ~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~-----------l~~---~eL~~~a~~~e~------~~ddv~~ 139 (301)
T PRK01212 80 PGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLP-----------LSK---EELLQLATEGEG------HPDNVAP 139 (301)
T ss_pred CCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCC-----------CCH---HHHHHHHHHhcC------CHHHHHH
Confidence 57999999999999999999999999999999999976 554 567888888874 2236778
Q ss_pred EeecceEEEe-C-CC-cccccCCCCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCC
Q 045151 208 STYGNIIKFR-S-GN-MTCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTP 284 (387)
Q Consensus 208 ~~~Gg~i~~~-~-~~-~~~l~~~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~ 284 (387)
+++||++.+. . +. +++++.++++++++++|+...+|.++++.+. ...+ .......+..+ ..+..++..
T Consensus 140 ~l~GG~~~~~~g~g~~~~~~~~~~~~~~vlv~p~~~~sT~~a~~~l~---~~~~--~~~~~~~~~~~-~~l~~al~~--- 210 (301)
T PRK01212 140 ALLGGLVLALEENGVISVKIPVFDDLKWVVAIPNIELSTAEARAVLP---KQYS--LKDAVFNSSRA-ALLVAALYT--- 210 (301)
T ss_pred HHhCCEEEEEECCceEEEEecCCCCeEEEEEECCCcCCHHHHHHhCc---CcCC--HHHHHHHHHHH-HHHHHHHhh---
Confidence 9999987764 2 33 5677766789999999999999998764321 1111 11112223322 234555554
Q ss_pred CCCcchHHHHHHHHHHHH-HHHHHhhcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 045151 285 DDLSITEKEERLEELMEM-NQGLLQCMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTEL 362 (387)
Q Consensus 285 ~~~~~~~d~~~l~~~~~~-~~~~l~~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~ 362 (387)
+|++.+++.|+. .|...+. ..+|+++++++.+++.| ++++|||+| +|++++++++..++..+.+.+.+
T Consensus 211 ------~d~~~~~~~~~~~~~~~~~~--~~~p~~~~i~~~~~~~Ga~g~~~SGsG--ptv~~l~~~~~~~~~~~~l~~~~ 280 (301)
T PRK01212 211 ------GDYELAGRAMKDVLHEPYRA--KLIPGFAEVRQAALEAGALGAGISGAG--PTVFALCDKEDAEKVADALQKAF 280 (301)
T ss_pred ------CCHHHHHHHhchhheHHhHH--hhCCCHHHHHHHHHHCCCeEEEEEchh--hheeEEeccccHHHHHHHHHHhh
Confidence 678889998842 2333321 23689999999999998 899999988 89999998754334444454443
Q ss_pred H-HCCceEEEeeecCCceEEE
Q 045151 363 E-TCGFQCLIAGIGGTGVEVC 382 (387)
Q Consensus 363 ~-~~g~~~~~~~~~~~G~~v~ 382 (387)
. ...+.+++++++++|++|.
T Consensus 281 ~~~~~~~~~~~~~~~~G~~~~ 301 (301)
T PRK01212 281 LQGIEGFVHVLRLDTAGARVL 301 (301)
T ss_pred ccCCCeEEEEeccCCCceEeC
Confidence 1 1136899999999999873
No 29
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.92 E-value=9.9e-23 Score=194.10 Aligned_cols=292 Identities=12% Similarity=0.135 Sum_probs=185.5
Q ss_pred EEEcCceEEEE-----eccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCC
Q 045151 4 KARAPGKIILA-----GEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSP 78 (387)
Q Consensus 4 ~~~APgkv~L~-----GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 78 (387)
++++|+|+.+- |+|.-.+|+..++.. +.++++.+++. ++..+++....-. .++.
T Consensus 2 ~v~~~~rlH~g~~d~~~~~gr~~Gg~G~al~-~~~~~v~v~~~----~~~~v~~~~~~g~--------~l~~-------- 60 (324)
T TIGR00144 2 IINTPSRIHLTLIDLNGSIGRVDGGVGLALE-EPEIVIGLKES----DDMGVEFTSHAEG--------KLGE-------- 60 (324)
T ss_pred eecccccccccccCCCCccCccccceEEEEe-CCcEEEEEEEC----CCceEEecccccc--------cccc--------
Confidence 68999998654 777778888766554 46888888764 3444444322110 0000
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHH
Q 045151 79 FPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAAL 158 (387)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al 158 (387)
+.-.+.+..+++. ++. ..+..+++|+|+++||.++|||||||+++|++.|+
T Consensus 61 ---------~~~~n~~~~~~~~----------------~~~----~~g~~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~ 111 (324)
T TIGR00144 61 ---------EYRRSRIMEAARK----------------TLK----HIGSEGFHFTVRSMFPAHSGLGSGTQLSLAVGRLV 111 (324)
T ss_pred ---------hhHHHHHHHHHHH----------------HHH----HhCCCCEEEEEeecCCCccCccHHHHHHHHHHHHH
Confidence 0112233322221 111 11235899999999999999999999999999999
Q ss_pred HHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeC------CC------------
Q 045151 159 LGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRS------GN------------ 220 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~------~~------------ 220 (387)
+.+++.+ +++ ++++++|.+ |..++.|++++.+||++.... .+
T Consensus 112 ~~l~~~~-----------ls~---~el~~~a~~------ge~s~~~va~~~~GG~vv~~G~~~~~~~~~~~~~~~~~~~~ 171 (324)
T TIGR00144 112 SEYYGMK-----------FTA---REIAHIVGR------GGTSGIGVASFEDGGFIVDGGHSSKEKSDFLPSSASSAKPA 171 (324)
T ss_pred HHHhCCC-----------CCH---HHHHHHHhC------CCCCccceeeeeeCCEEEECCcccccccccCcccccCCCCC
Confidence 9999976 655 456677654 556778899999999876520 00
Q ss_pred --cccccCCCCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHcCCCCCCCcchHHHHHHH
Q 045151 221 --MTCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISK-ELSTIIESPTPDDLSITEKEERLE 297 (387)
Q Consensus 221 --~~~l~~~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~-~~~~~l~~~~~~~~~~~~d~~~l~ 297 (387)
+.++++| +|+++++.|+.. +|....+. ....+.++-..++ ..++.++.- .+..++.. +|++.|+
T Consensus 172 ~~~~r~~~p-~~~~vlviP~~~-~t~~are~-~~lp~~~~i~~~d-v~~~~~~~l~~l~~al~~---------~d~~~~~ 238 (324)
T TIGR00144 172 PVIARYDFP-DWNIILAIPEID-SVSGRREV-NIFQKYCPVPLRD-VERICHLILMKMMPAVVE---------GDLDAFG 238 (324)
T ss_pred CeEEecCCC-CcEEEEEecCCC-CCCcHHHH-HHHHhcCCCCHHH-HHHHHHHHHHHHHHHHHh---------cCHHHHH
Confidence 2234444 999999999988 76654332 0111111111122 233333221 12344443 8999999
Q ss_pred HHHHHHHHHH-h--hcCCCCHHHHHHHHHHhhcCCcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCC--ceEEEe
Q 045151 298 ELMEMNQGLL-Q--CMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCG--FQCLIA 372 (387)
Q Consensus 298 ~~~~~~~~~l-~--~~~~s~p~l~~l~~~a~~~g~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g--~~~~~~ 372 (387)
+.|++.+..- + .-+.-.|.+..+++.+.+. +|+.|||+| +++|++++++ .++..+++.+.|...+ .+++++
T Consensus 239 ~~l~d~~~~~f~~~~~~~r~~li~~~~~~l~~a-~g~~iSGsG--PTv~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 314 (324)
T TIGR00144 239 ESVNEIQGLGFKKIERELQDPLIKRIIDSMISA-PGAGMSSFG--PTVYAVTDEK-PGNIAGAVADIFGPYGVYGRIIVT 314 (324)
T ss_pred HHHHHHHhhcchhhhccccCHHHHHHHHHHHhc-cCceecCCC--CeEEEEecCc-hHHHHHHHHHHhhhCCCceEEEEE
Confidence 9997533221 1 1112366677766666544 889999877 9999999874 4566777888887665 479999
Q ss_pred eecCCceEEE
Q 045151 373 GIGGTGVEVC 382 (387)
Q Consensus 373 ~~~~~G~~v~ 382 (387)
+++++|++|.
T Consensus 315 ~~~n~Ga~v~ 324 (324)
T TIGR00144 315 KARNRGAFII 324 (324)
T ss_pred ccCCCCCEeC
Confidence 9999999874
No 30
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.92 E-value=2.3e-23 Score=192.98 Aligned_cols=191 Identities=19% Similarity=0.165 Sum_probs=141.0
Q ss_pred cCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcC-CCcc-cc
Q 045151 128 KPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGK-PSGL-DN 205 (387)
Q Consensus 128 ~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~-~sG~-D~ 205 (387)
++++|+++++||.++|||||||+++|++.|++.+++.+ +++ ++++++|+++|...++. .+|. |+
T Consensus 63 ~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~-----------l~~---~~l~~la~~~e~~~~~~~~~~~~D~ 128 (261)
T TIGR01920 63 DGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVE-----------IDD---IDILRLGARLSKDAGLSVTGAFDDA 128 (261)
T ss_pred CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCC-----------CCH---HHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 58999999999999999999999999999999999975 544 66789999999887743 3455 88
Q ss_pred eeEeecceEEEeCCCc---ccccCCCCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCC
Q 045151 206 TVSTYGNIIKFRSGNM---TCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESP 282 (387)
Q Consensus 206 ~~~~~Gg~i~~~~~~~---~~l~~~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~ 282 (387)
+++++||++.++.... ++++ ++++.++++.|+...+|.+... ..+..+..+.+++.++++.
T Consensus 129 ~~~~~gG~~~~~~~~~~~~~~~~-~~~~~~vv~~p~~~~tt~~~~~--------------~~l~~~~~~~~~~~~~~~~- 192 (261)
T TIGR01920 129 AASYLGGIVITDNRRMKILKRDK-LEGCTAAVLVPKEGERRENVDL--------------NRFRRISPVVEEAFNLALR- 192 (261)
T ss_pred HHHHhCCEEEEeCCCceEEEecC-CCCceEEEEECCCCcccccccH--------------HHhhhcchHHHHHHHHHhh-
Confidence 8999999977654332 2233 2445788888888766643211 1233334445556666665
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHH-hhcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHH
Q 045151 283 TPDDLSITEKEERLEELMEMNQGLL-QCMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTT 360 (387)
Q Consensus 283 ~~~~~~~~~d~~~l~~~~~~~~~~l-~~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~ 360 (387)
+|+ .++|+.||.++ ..++++++ +++.+++.| +|++|||+| ||+++|+++. +++.+
T Consensus 193 --------~~l---~~am~~n~~l~~~~lg~~~~----~i~~a~~~Galga~lSGaG--~sv~aL~~~~------~~v~~ 249 (261)
T TIGR01920 193 --------GEY---LKAMVLNGVAYATALGYPLE----PASKALEAGAAAAGLSGKG--PSYFALTEDP------EEAAE 249 (261)
T ss_pred --------CCH---HHHHhhChHHhHHhhCCChH----HHHHHHHcCCcEEeecCCC--CeEEEEeCCH------HHHHH
Confidence 444 48888888777 47887775 456688889 999999986 9999998862 46888
Q ss_pred HHHHCCceEEE
Q 045151 361 ELETCGFQCLI 371 (387)
Q Consensus 361 ~~~~~g~~~~~ 371 (387)
+|++.+.+++.
T Consensus 250 ~~~~~~~~~~~ 260 (261)
T TIGR01920 250 ALMEFGGDVIE 260 (261)
T ss_pred HHHhCCCeEEe
Confidence 88887766665
No 31
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.92 E-value=1.9e-23 Score=195.39 Aligned_cols=266 Identities=17% Similarity=0.212 Sum_probs=175.3
Q ss_pred CceEEEcCceEEEE----eccce-eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccC
Q 045151 1 MEVKARAPGKIILA----GEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHL 75 (387)
Q Consensus 1 ~~~~~~APgkv~L~----GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~ 75 (387)
|+ .++||+||+|+ |-..| ||.-..+..+|+++-++.+++. + .+++...... .+
T Consensus 1 ~~-~~~a~aKiNL~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~----~--~~~i~~~~~~---------~~------ 58 (275)
T PRK14611 1 ME-VLLSPAKVNLGLWILGKRPDGYHEIFTIYHTIDLYDRIYIKEH----H--TLEVKTSSPQ---------IK------ 58 (275)
T ss_pred Cc-eeeecceEEeeeccCcCCCCCcchhhheeEeccCCcEEEEEEC----C--cEEEEeCCCC---------CC------
Confidence 56 78999999998 65665 6677888889999999999763 2 2333221100 00
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHH
Q 045151 76 GSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLT 155 (387)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~ 155 (387)
. +.|++.++++.+. . ......+++|+++++||.++|||||||.++|++
T Consensus 59 ------------~-~~n~v~~a~~~~~----------------~---~~g~~~~~~i~i~k~IP~~~GLGSSsA~aaA~l 106 (275)
T PRK14611 59 ------------E-EENIVYKALRLFE----------------R---YTGIDINYSIFIEKNIPVGAGLGGGSSNAAVVL 106 (275)
T ss_pred ------------C-cccHHHHHHHHHH----------------H---HhCCCCCeEEEEEeCCCCcCCccHHHHHHHHHH
Confidence 0 1233433332210 0 111235899999999999999999999999999
Q ss_pred HHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeC-CC-cccccCCCCceEE
Q 045151 156 AALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRS-GN-MTCIKSNMPLKML 233 (387)
Q Consensus 156 ~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~-~~-~~~l~~~~~~~~l 233 (387)
.|++.+++.+ +++ ++++++|..+| .|.+++++||++.+.. ++ +++++.+.++.++
T Consensus 107 ~al~~~~~~~-----------l~~---~~l~~la~~i~---------~D~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~v 163 (275)
T PRK14611 107 KYLNELLGNP-----------LSE---EELFELASSIS---------ADAPFFLKGGFALGRGIGDKLEFLEKPISREIT 163 (275)
T ss_pred HHHHHHhCCC-----------CCH---HHHHHHHHHhC---------CCCCeeecCCeEEEeccCceeEECCcCCCcEEE
Confidence 9999999976 555 55677777655 3888889999877653 32 4555544566799
Q ss_pred EEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHH-HHHHHHhhcCC
Q 045151 234 ITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELME-MNQGLLQCMGV 312 (387)
Q Consensus 234 l~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~-~~~~~l~~~~~ 312 (387)
+++|+.+.+|+++++.+.+.....+... ..+.+++.. +|++.+...+. .-|.... .
T Consensus 164 v~~p~~~~sT~~~~~~l~~~~~~~~~~~-----------~~l~~~l~~---------~~~~~~~~~~~n~l~~~~~---~ 220 (275)
T PRK14611 164 LVYPNIKSSTGRVYSKVTKQILTNKEDL-----------NIIISLLRE---------GEEKKIEEVIENTLGEIAL---E 220 (275)
T ss_pred EEeCCCCCChHHHHHhcchhhccCcchH-----------HHHHHHHHc---------CCHHHHHHhcCCcccHHHH---H
Confidence 9999999999998866543221122111 122334443 45555554432 1122222 3
Q ss_pred CCHHHHHHHHHHhhcCCcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeee
Q 045151 313 SHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGI 374 (387)
Q Consensus 313 s~p~l~~l~~~a~~~g~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~ 374 (387)
..|++.++.+...+.|.++.||||| +++|+++++. +.+++.+..+++.++.++.
T Consensus 221 ~~P~l~~~~~~l~~~~~~~~~SGSG--~tvf~l~~~~------~~~~~~~~~~~~~~~~~~~ 274 (275)
T PRK14611 221 LYPEIKEVYRFLEYLGYKPFVSGSG--SSVYVFGKPS------EEVKKAAAVRGWKLIETKL 274 (275)
T ss_pred HCHHHHHHHHHHHhCCCCEEEeCcc--ccceeEeCCH------HHHHHHHhhCCeEEEEEee
Confidence 4788999888776656788899999 9999999762 3344555556788887753
No 32
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.92 E-value=2e-22 Score=188.95 Aligned_cols=266 Identities=15% Similarity=0.194 Sum_probs=169.5
Q ss_pred ceEEEcCceEEEE----eccce-eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCC
Q 045151 2 EVKARAPGKIILA----GEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLG 76 (387)
Q Consensus 2 ~~~~~APgkv~L~----GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~ 76 (387)
++.++||+|++|+ |-..| ||.-..+-..||++-++.+++. +...+++.... ..++..
T Consensus 3 ~~~~~apaKiNl~L~i~~~r~dgyH~l~s~~~~i~l~d~v~v~~~----~~~~~~i~~~~---------~~~p~~----- 64 (280)
T PRK14614 3 KLTLKAPAKVNYRLDVLRRRPDGYHDLRMIMQRVDLCDEIEIALS----DGPGIRVTCGR---------EGVPDG----- 64 (280)
T ss_pred ceEEeecceEEeeeccCCCCCCCcChhheEeEECCCCeEEEEEEC----CCCCEEEEeCC---------CCCCCC-----
Confidence 3567999999997 55544 4566777789999999999863 22234443110 011100
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHH
Q 045151 77 SPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTA 156 (387)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~ 156 (387)
...-..+.++.+.+.+ ...++++|+++++||.++|||||||.++|++.
T Consensus 65 ---------~~nl~~~a~~~~~~~~-----------------------~~~~~~~i~i~~~IP~~~GLGsssa~~~a~~~ 112 (280)
T PRK14614 65 ---------PGNIAWRAADALLDLS-----------------------GREVGIDISITKNIPVAAGLGGGSSDAATVLM 112 (280)
T ss_pred ---------CCcHHHHHHHHHHHHh-----------------------CCCCceEEEEEecCCCcCccHHHHHHHHHHHH
Confidence 0000112222222211 11347899999999999999999999999999
Q ss_pred HHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-cccccCCCCceEEE
Q 045151 157 ALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-MTCIKSNMPLKMLI 234 (387)
Q Consensus 157 Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~~~l~~~~~~~~ll 234 (387)
|++.+++.+ +++ +++.++|.. +|.|++++.+||..... .++ +++++.++++++++
T Consensus 113 al~~~~~~~-----------l~~---~~l~~~a~~---------~G~Dv~~~l~gg~~~~~g~ge~~~~l~~~~~~~ivl 169 (280)
T PRK14614 113 GVNELLGLG-----------LSD---ERLMEIGVK---------LGADVPFFIFKKTALAEGIGDKLTAVEGVPPLWVVL 169 (280)
T ss_pred HHHHHhCCC-----------cCH---HHHHHHHHH---------hCCCcceeeeCCcEEEEEcCceeEECCCCCCcEEEE
Confidence 999999875 655 455666653 35699999999976554 343 56666556788999
Q ss_pred EEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCC
Q 045151 235 TNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSH 314 (387)
Q Consensus 235 ~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~ 314 (387)
++|+...+|+++++.++..+...+......++.+.. . ..+.. +|++.+.. -..
T Consensus 170 ~~p~~~~sT~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~---------ndle~~~~-------------~~~ 222 (280)
T PRK14614 170 VNPGLHVSTAWVYQNLRLTSRKDLAIIPRFFGSVAE----V-CALLS---------NDLESVTI-------------GRF 222 (280)
T ss_pred ECCCCCCCHHHHHhcccccccCcchhhhhhhhhHHH----H-hhhcc---------cCcHHHHH-------------hcC
Confidence 999999999998865532111111100000111110 0 01111 33332210 127
Q ss_pred HHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHC-CceEEEe
Q 045151 315 SSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETC-GFQCLIA 372 (387)
Q Consensus 315 p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~-g~~~~~~ 372 (387)
|.++++++.+++.| +|++||||| ||++++++++ +..+++.+.+++. ++.++.+
T Consensus 223 p~l~~i~~~~~~~Galga~lSGSG--~tv~~l~~~~---~~~~~~~~~l~~~~~~~~~~~ 277 (280)
T PRK14614 223 PVIGEIKEELLAAGARGSLMSGSG--STVFGLFDDE---AAARAAAEELSRESGWFAAAV 277 (280)
T ss_pred hHHHHHHHHHHhCCCCEEEEeccc--cceEEEeCCH---HHHHHHHHHhhhccCceEEEE
Confidence 99999999999999 999999998 9999999983 4456677777665 5555544
No 33
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.91 E-value=3.2e-23 Score=196.57 Aligned_cols=214 Identities=19% Similarity=0.206 Sum_probs=149.8
Q ss_pred cCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccc-e
Q 045151 128 KPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDN-T 206 (387)
Q Consensus 128 ~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~-~ 206 (387)
++++|+++++||.++|||||||+++|++.|++.+++.+ +++ ++++++|..+|. ..|+ +
T Consensus 79 ~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~-----------l~~---~el~~~a~~~E~-------h~Dnv~ 137 (302)
T TIGR00191 79 PPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLP-----------LSK---ERLLDYASELEG-------HPDNVA 137 (302)
T ss_pred CCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCC-----------cCH---HHHHHHHHHhcC-------CcccHH
Confidence 58999999999999999999999999999999999976 554 567889988884 2575 7
Q ss_pred eEeecceEEEe-CC-CcccccCC--CCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCC
Q 045151 207 VSTYGNIIKFR-SG-NMTCIKSN--MPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESP 282 (387)
Q Consensus 207 ~~~~Gg~i~~~-~~-~~~~l~~~--~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~ 282 (387)
++++||++.+. .+ .+.+++.+ +++++++++|+.+.+|+++++.+. +..+. .+....+..+. .+..++..
T Consensus 138 ~~l~GG~~~~~~~~~~~~~~~~~~~~~~~~vl~~p~~~~sT~~a~~~lp---~~~~~--~~~v~~~~~~~-~l~~al~~- 210 (302)
T TIGR00191 138 PALLGGFQLAFVEDDKLEVLKIPIFSKLDWVLAIPNIEVSTAEARAVLP---KAYPR--QDLVFNLSHLA-GLVHAIYQ- 210 (302)
T ss_pred HHhccCEEEEEEcCCceEEEEeCCCCCEEEEEEECCCcccHHHHHHhCc---ccCCH--HHHHHHHHHHH-HHHHHHHc-
Confidence 79999986654 33 35555443 679999999999999998754321 11110 11122222222 12344443
Q ss_pred CCCCCcchHHHHHHHHHHHHH--HHHHhhcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHH
Q 045151 283 TPDDLSITEKEERLEELMEMN--QGLLQCMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVT 359 (387)
Q Consensus 283 ~~~~~~~~~d~~~l~~~~~~~--~~~l~~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~ 359 (387)
++++ +++.+..+ |+..+ ...+|.++++++.+++.| +|++||||| ++++++++++...+.+.++.
T Consensus 211 --------~~~~-l~~~~~~d~l~e~~~--~~l~p~l~~i~~~~~~~Ga~g~~lSGsG--ptv~al~~~~~~~~~~~~~~ 277 (302)
T TIGR00191 211 --------KKPD-LGAIMMKDRIHQPYR--ESLIPNLFKIKQAALEKGAYGITISGSG--PTILAMADEEFAEQKEQDLL 277 (302)
T ss_pred --------CCHH-HHHHHcccccchhhH--hhhCCCHHHHHHHHHHCCCeEEEEEchh--hhheEEecchhhHHHHHHHH
Confidence 3333 45554332 23333 234899999999999999 999999999 89999998754433344444
Q ss_pred HHHHHCC--ceEEEeeecCCceEEE
Q 045151 360 TELETCG--FQCLIAGIGGTGVEVC 382 (387)
Q Consensus 360 ~~~~~~g--~~~~~~~~~~~G~~v~ 382 (387)
+.+.+.+ +++++++++++|++|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~Ga~~~ 302 (302)
T TIGR00191 278 EVLHKQGIEGTVHVLDFDNDGARVE 302 (302)
T ss_pred HHHHhcCCCeEEEEcccCCCCeEeC
Confidence 4444443 6899999999999875
No 34
>PTZ00299 homoserine kinase; Provisional
Probab=99.91 E-value=3e-23 Score=197.35 Aligned_cols=217 Identities=19% Similarity=0.194 Sum_probs=155.9
Q ss_pred cCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccc-e
Q 045151 128 KPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDN-T 206 (387)
Q Consensus 128 ~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~-~ 206 (387)
++++|+++++||.++|||||||.++|.+.|++.+++.+ ++..+++++.++|.+.|. ..|| +
T Consensus 81 ~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~-----------l~~~~~~el~~~A~~~EG-------HpDNVa 142 (336)
T PTZ00299 81 PPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLT-----------METENEEALLQAIAKFEG-------HPDNAA 142 (336)
T ss_pred CceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCC-----------CCccCHHHHHHHHHhhcC-------CcccHH
Confidence 57999999999999999999999999999999999976 665566788999988872 3795 7
Q ss_pred eEeecceEEEe-C--CC--cccccCCCCceEEEEEeCCC--CChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHH--HHH
Q 045151 207 VSTYGNIIKFR-S--GN--MTCIKSNMPLKMLITNTKVG--RNTRALVAGVSERSMRHPDAMSSVFNAVDSISKE--LST 277 (387)
Q Consensus 207 ~~~~Gg~i~~~-~--~~--~~~l~~~~~~~~ll~~t~~~--~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~--~~~ 277 (387)
+|++||++... . ++ ..+++.+++++++++.|+.. .+|+++. +. .|+.+. +-+.+.++.+. +..
T Consensus 143 pal~GG~~~~~~~~~ge~~~~~i~~~~~~~~vv~iP~~~~~~sT~~aR----~v---LP~~v~-~~dav~n~~~~~~lv~ 214 (336)
T PTZ00299 143 PAIYGGIQLVYKKDNGRFLTYRVPTPPNLSVVLFVPHNKMKANTHVTR----NL---IPTSVS-LEDAVFNISRTSILVL 214 (336)
T ss_pred HHHhCCEEEEEecCCCceEEEecCCCCCeEEEEEECCCCccccHHHHH----hh---CcccCc-HHHHHHhhhHHHHHHH
Confidence 79999985543 2 34 33566667899999999874 5886542 11 232221 11233333322 345
Q ss_pred HHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCC--------
Q 045151 278 IIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPT-------- 348 (387)
Q Consensus 278 ~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~-------- 348 (387)
++.. +|++.+..+.+..|+..|.. ...|.++++++.+.+.| +++.||||| +++|+|++.
T Consensus 215 al~~---------~d~~ll~~~~D~lhep~R~~-~liP~~~~v~~~~~~~Ga~g~~lSGSG--PTv~al~~~~~~~~~~~ 282 (336)
T PTZ00299 215 ALST---------GDLRMLKSCSDKLHEQQRSD-ALFPHFRPCVKAAREAGAHYAFLSGAG--PSVCALVGGRHGDPLTQ 282 (336)
T ss_pred HHHh---------CCHHHHHhchhcccCccccc-ccCccHHHHHHHHHHCCCeEEEEEchh--hhheEEecccccccccc
Confidence 5554 67887755322234433311 23889999999999999 999999999 999999983
Q ss_pred ----CCCHHHHHHHHHHHHHCC--ceEEEeeecCCceEEE
Q 045151 349 ----LLSATVVEKVTTELETCG--FQCLIAGIGGTGVEVC 382 (387)
Q Consensus 349 ----~~~~~~~~~i~~~~~~~g--~~~~~~~~~~~G~~v~ 382 (387)
+..++..+++.+.|.+.| +++++++++++|+++.
T Consensus 283 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 322 (336)
T PTZ00299 283 PREERKAESVAEAMIKAAEAVGVAGRVIITQPSDQGVHLV 322 (336)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCceEEEEccCCCCCcEEE
Confidence 113456666777777665 4789999999999987
No 35
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.91 E-value=1.8e-22 Score=189.84 Aligned_cols=263 Identities=18% Similarity=0.190 Sum_probs=168.0
Q ss_pred CceEEEcCceEEEE----eccce-eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccC
Q 045151 1 MEVKARAPGKIILA----GEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHL 75 (387)
Q Consensus 1 ~~~~~~APgkv~L~----GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~ 75 (387)
|.+.+.||+||+|+ |--.| ||.-..+-..|+++-++.+++. ++..+++...... .++.
T Consensus 5 ~~~~~~a~aKiNL~L~i~~kr~dGyH~l~s~~~~i~l~D~l~i~~~----~~~~i~~~~~~~~--------~ip~----- 67 (290)
T PRK14608 5 PSLTEFAPAKINLALHVTGRRADGYHLLESLVAFADVGDRLTLEPA----EALSLTVSGPFAA--------GLGD----- 67 (290)
T ss_pred ceEEEEeceeEEeeeccCCCCCCCCcceeEEEEECCCCcEEEEEEC----CCCcEEEeCCCcc--------CCCC-----
Confidence 55678899999998 44444 5566777789999999999763 2233444321100 0000
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhh-CccCeEEEEEecCCCCCCCChhHHHHHHH
Q 045151 76 GSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSII-GFKPATVVVTSDLPLGAGLGSSAAFCVSL 154 (387)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~i~i~s~iP~g~GLGSSaA~~va~ 154 (387)
+..|++.++++.+ .. ... ..++++|+++++||.++|||||||.++|+
T Consensus 68 -------------~~~Nlv~ka~~~~----------------~~---~~g~~~~~~~i~i~k~IP~~~GLGsssa~aaa~ 115 (290)
T PRK14608 68 -------------GDDNLVLRAARAL----------------RA---RVGPGLPPGAFHLEKNLPVAAGIGGGSADAAAA 115 (290)
T ss_pred -------------CCCcHHHHHHHHH----------------HH---HhCCCCCceEEEEEeCCcCcCCchHHHHHHHHH
Confidence 1123333332211 10 111 23589999999999999999999999999
Q ss_pred HHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-cccccCCCCceE
Q 045151 155 TAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-MTCIKSNMPLKM 232 (387)
Q Consensus 155 ~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~~~l~~~~~~~~ 232 (387)
+.+++++++.+ +++ ++++++|... |.|++++++||.+.+. .++ +++++.++++++
T Consensus 116 l~~l~~l~~~~-----------ls~---~el~~la~~i---------g~dv~~~l~gg~~~~~g~g~~~~~l~~~~~~~~ 172 (290)
T PRK14608 116 LRLLARLWGLA-----------LDD---ERLAALALSL---------GADVPVCLDSRPLIMRGIGEELTPLPGLPSLPA 172 (290)
T ss_pred HHHHHHHhCCC-----------cCH---HHHHHHHHHh---------CCCcchhhcCCeEEEEecCCEeEECCCCCCcEE
Confidence 99999999976 655 4567777654 4699999999987665 343 566654467889
Q ss_pred EEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcC-
Q 045151 233 LITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMG- 311 (387)
Q Consensus 233 ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~- 311 (387)
++++|+.+.+|.++++.+.... .+.. ......+.... .....+ ...++.++.+.
T Consensus 173 vv~~p~~~~sT~~~~~~l~~~~--~~~~-~~~~~~~~~~~-~l~~~~---------------------~~~~ndle~~~~ 227 (290)
T PRK14608 173 VLVNPGVPVATPDVFRALGLRD--GPPL-PGAPDPLASAD-ALLAAL---------------------AATRNDLEPPAL 227 (290)
T ss_pred EEECCCCCcChHHHHHhhcccc--CCcc-hhhhhhhhhhh-hHHHHH---------------------HhccCccHHHHH
Confidence 9999999999998876542111 1110 00001111000 011111 11111222111
Q ss_pred CCCHHHHHHHHHHhhc-C-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHC
Q 045151 312 VSHSSIETVLRTTLKF-K-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETC 365 (387)
Q Consensus 312 ~s~p~l~~l~~~a~~~-g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~ 365 (387)
..+|+++++++.+.+. | ++++||||| +++|+++++ ++..+++.+.+++.
T Consensus 228 ~l~p~l~~i~~~~~~~~Ga~~~~lSGSG--stvf~l~~~---~~~a~~~~~~l~~~ 278 (290)
T PRK14608 228 ALAPVIGEVLAALRAQPGALLARMSGSG--ATCFALFAD---EAAAEAAAAAIAAA 278 (290)
T ss_pred HcCcHHHHHHHHHHhcCCCCeeEEeccc--cCeEEEeCC---HHHHHHHHHHhHhh
Confidence 2389999999999999 9 999999999 999999987 34456677777654
No 36
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.91 E-value=5.1e-22 Score=186.95 Aligned_cols=275 Identities=14% Similarity=0.134 Sum_probs=174.4
Q ss_pred CceEEEcCceEEEE----eccce-eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccC
Q 045151 1 MEVKARAPGKIILA----GEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHL 75 (387)
Q Consensus 1 ~~~~~~APgkv~L~----GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~ 75 (387)
|.+.++||+||+|+ |--.| ||.-.++.++|++|.++.+++. + .+++..... ..+.
T Consensus 2 ~~~~~~a~aKiNL~L~i~~~r~dgyH~l~si~~~i~l~d~v~v~~~----~--~~~i~~~~~---------~~p~----- 61 (287)
T PRK14616 2 QHISVKAFAKINLGLLITGKRPDGYHTLETIFAPINWYDTLTFSPS----D--TISMSCTNL---------DLPV----- 61 (287)
T ss_pred CceEEeeceeEEeeeecCCCCCCCccceeEEEEEcCCCCEEEEEEC----C--CEEEEeCCC---------CCCC-----
Confidence 34668999999997 44444 6677889999999999999752 2 244432110 0000
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHH
Q 045151 76 GSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLT 155 (387)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~ 155 (387)
+..|.+.++++. |+. ......+++|+|+++||.++|||||||.++|++
T Consensus 62 -------------~~~nl~~~a~~~----------------~~~---~~~~~~~~~I~i~k~IP~~~GLGssSA~aaA~l 109 (287)
T PRK14616 62 -------------DDSNLCIRAAKA----------------LQE---YAGVSKGVSITLDKRVPFGAGLGGGSSDAATVL 109 (287)
T ss_pred -------------CccHHHHHHHHH----------------HHH---HhCCCCCeEEEEEeCCCCcCCchHHHHHHHHHH
Confidence 001222222211 111 011245899999999999999999999999999
Q ss_pred HHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEee-cceEEEe-CCC-cccccCCCCceE
Q 045151 156 AALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTY-GNIIKFR-SGN-MTCIKSNMPLKM 232 (387)
Q Consensus 156 ~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~-Gg~i~~~-~~~-~~~l~~~~~~~~ 232 (387)
.|++.+++.+ +++ ++++++|.+.| .|++++.. ||+.... .++ +++++.+.++++
T Consensus 110 ~al~~l~g~~-----------ls~---~el~~~a~~ig---------~Dvp~~l~~gg~~~~~g~g~~~~~~~~~~~~~~ 166 (287)
T PRK14616 110 RVLNELWEIN-----------APS---ADLHRLAVKLG---------ADVPYFLEMKGLAYATGIGDELEDLQLTLPFHI 166 (287)
T ss_pred HHHHHHhCCC-----------cCH---HHHHHHHHHhC---------CCcceEeccCCcEEEEEcCceeEECCcCCCcEE
Confidence 9999999976 654 55678887654 58877664 7765443 444 445554456889
Q ss_pred EEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCC
Q 045151 233 LITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGV 312 (387)
Q Consensus 233 ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~ 312 (387)
++++|+...+|+++++.+.+..... ...+ ..+...+.. .++++.++.+++.-+.....
T Consensus 167 vvv~P~~~vsT~~a~~~l~~~~~~~----------~~~~-~~l~~~l~~--------~~~~~l~~~~~nD~e~~~~~--- 224 (287)
T PRK14616 167 VTVFPEEHISTVWAYKNFYRRFERE----------RPDL-KTLVRRLCL--------DGDTSVLPAFENDFESAVFD--- 224 (287)
T ss_pred EEECCCCCcCHHHHHHHhhhhcccC----------CchH-HHHHHHHhc--------CCHHHHHHHhcCccHHHHHH---
Confidence 9999999999999876553221110 0011 111222221 13445444444322222222
Q ss_pred CCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecCCceEE
Q 045151 313 SHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEV 381 (387)
Q Consensus 313 s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~G~~v 381 (387)
..|+++++++.+++.| +++.||||| +++++|+++ ++.++++.+.+++. +.+.+.+.|...
T Consensus 225 l~p~l~~v~~~~~~~Galg~~lSGSG--ptv~al~~~---~~~a~~i~~~l~~~----~~~~~~~~~~~~ 285 (287)
T PRK14616 225 HYPAVRKVKDDLLEAGSFFASLSGSG--SAVFGLFEN---EADAEAAAEMMRAR----YRTNLTPPGFSM 285 (287)
T ss_pred hChHHHHHHHHHHhCCCCeEEEeccc--ccceEEeCC---HHHHHHHHHHhHHh----CccccCCCcccc
Confidence 2799999999999999 999999999 899999987 34456677666553 344555556543
No 37
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.90 E-value=9.5e-22 Score=185.44 Aligned_cols=277 Identities=14% Similarity=0.098 Sum_probs=173.4
Q ss_pred eEEEcCceEEEE----eccce-eeCCeeeEeeec-cceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCC
Q 045151 3 VKARAPGKIILA----GEHAV-VHGSTAVAACID-LYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLG 76 (387)
Q Consensus 3 ~~~~APgkv~L~----GEh~~-~~g~~~l~~ai~-~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~ 76 (387)
+.+.||+||+|+ |-..| ||.--.+-.+|+ .+-++.+++. ++..+++..... ++ +.
T Consensus 7 ~~~~apaKINL~L~v~~kr~DGyH~l~sl~~~i~~~~D~l~i~~~----~~~~i~~~~~~~------~~---~~------ 67 (296)
T PRK14615 7 VTLRSGCKVNLDLRITGVRPDGYHEIDSLFLPLPEPHDELHVRVT----DAPGITVTCTIP------DL---DP------ 67 (296)
T ss_pred EEEEecceEEeccccCCcCCCCCcceEEEEEECCCCCcEEEEEEC----CCCCEEEEECCC------CC---CC------
Confidence 567899999998 55665 556788889998 6999999864 333355432211 00 00
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHH
Q 045151 77 SPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTA 156 (387)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~ 156 (387)
. .|.+.++++.+ .. .....++++|+|+++||.++|||||||.++|++.
T Consensus 68 ----------~---~Nlv~~a~~~~----------------~~---~~~~~~~~~i~i~k~IP~~~GLGsgsa~aaa~l~ 115 (296)
T PRK14615 68 ----------E---RNTVTRAYTAF----------------AA---ATGFRPPLEVHLRKGIPHGAGLGGGSADAAALLR 115 (296)
T ss_pred ----------C---ccHHHHHHHHH----------------HH---HhCCCCCeEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence 0 12222222111 10 0011258999999999999999999999999999
Q ss_pred HHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-cccccC-CCCceEE
Q 045151 157 ALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-MTCIKS-NMPLKML 233 (387)
Q Consensus 157 Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~~~l~~-~~~~~~l 233 (387)
+++++++.+ ++. ++++++|...| .|++++.+||..... .++ +++++. ++++.++
T Consensus 116 al~~l~~~~-----------l~~---~~l~~~a~~~g---------aDvPffl~gg~a~~~G~Ge~~~~l~~~~~~~~~v 172 (296)
T PRK14615 116 HLNSIAPHP-----------LSP---EALAKLAAGVG---------ADVPFFLHNVPCRATGIGEILTPVALGLSGWTLV 172 (296)
T ss_pred HHHHHcCCC-----------cCH---HHHHHHHHHhC---------CCCeeeccCCCEEEEeeEeEEEECCCCCCCcEEE
Confidence 999999875 555 45567766543 599888889875544 343 566654 3567899
Q ss_pred EEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHh-hcCC
Q 045151 234 ITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQ-CMGV 312 (387)
Q Consensus 234 l~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~-~~~~ 312 (387)
+++|+++.+|+++++.+.......+.. .......+. .+...... +|...+..... .++.++ ..-.
T Consensus 173 l~~P~~~vsT~~a~~~~~~~~~~~~~~---~~~~~~~~~-~~l~~~~~---------~~~~~~~~~~~-l~ndle~~~~~ 238 (296)
T PRK14615 173 LVCPEVQVSTPWAYAAWDAANAKQIAA---SSRKQNRLR-GCLTTEGV---------ADRNPLSRGLW-LHNSFEPVVFA 238 (296)
T ss_pred EECCCCCcChHHHHHHhhhhccccccc---ccccccchH-HHHHhhhc---------cchhhhhhhhh-ccccchhHhHH
Confidence 999999999999876543221100000 000000000 00011110 11111111100 011122 1113
Q ss_pred CCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEe
Q 045151 313 SHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIA 372 (387)
Q Consensus 313 s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~ 372 (387)
..|+++++++.+.+.| ++++||||| +|+|+|+++ ++.++++.+++++.|+.++.+
T Consensus 239 l~P~l~~~~~~~~~~GAlga~mSGSG--ptvfaL~~~---~~~a~~i~~~l~~~g~~~~~~ 294 (296)
T PRK14615 239 AHPELRRLKETLLRHGAAAALMSGSG--SSVFGLFRR---RAQAEAAFEMLKGHNIRVYLH 294 (296)
T ss_pred hChHHHHHHHHHHhcCCCEEEEeccC--cceEEEeCC---HHHHHHHHHHHhhhccceEEE
Confidence 5899999999999999 999999999 999999987 456778888898888887764
No 38
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.89 E-value=3e-21 Score=180.71 Aligned_cols=259 Identities=17% Similarity=0.176 Sum_probs=165.9
Q ss_pred CceEEEcCceEEEE----eccce-eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccC
Q 045151 1 MEVKARAPGKIILA----GEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHL 75 (387)
Q Consensus 1 ~~~~~~APgkv~L~----GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~ 75 (387)
|.+.+.||+||+|+ |-..| ||.--.+-.+|++|-++++++. + ..+++..... .++.+
T Consensus 1 ~~~~~~a~aKiNl~L~i~~~~~dgyH~l~sl~~al~l~d~v~i~~~----~-~~~~i~~~~~----~~p~~--------- 62 (276)
T PRK14612 1 MTMERLAPAKVNLGLSVLGRREDGYHELHTLMVPLDVGDRLEVEPI----A-SGLELRVLGA----DLPTD--------- 62 (276)
T ss_pred CceEEeeCcEEeeccccCCCCCCCCceeEEEEEECCCCCEEEEEEC----C-CcEEEEcCCC----CCCCC---------
Confidence 66778999999997 54444 6677899999999999999863 2 2244432110 01100
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHH
Q 045151 76 GSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLT 155 (387)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~ 155 (387)
..|.+.+++. .|+.. ....++++|++.++||.++|||||||.++|++
T Consensus 63 --------------~~Nli~ka~~----------------~~~~~---~g~~~~~~I~i~k~IP~~~GLGssSa~aaa~l 109 (276)
T PRK14612 63 --------------ERNLVYRAAR----------------AYLDA---AGQPGGVRITLEKRLPLAAGLGGGSSDAAATL 109 (276)
T ss_pred --------------CcccHHHHHH----------------HHHHH---hCCCCCeEEEEEecCCCcCCCchHHHHHHHHH
Confidence 0112222111 11111 11235799999999999999999999999999
Q ss_pred HHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-cccccCCCCceEE
Q 045151 156 AALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-MTCIKSNMPLKML 233 (387)
Q Consensus 156 ~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~~~l~~~~~~~~l 233 (387)
.+++++++.+ + ++ .++|... |.|++++.+||++.+. .++ +++++. +++.++
T Consensus 110 ~al~~l~~~~-----------l---~l---~~ia~~~---------g~dv~~~~~GG~~~~~g~g~~~~~l~~-~~~~~v 162 (276)
T PRK14612 110 LALAQLYPAP-----------V---DL---PALALTL---------GADVPFFLLGGAAEARGVGERLTPLEL-PPVPLV 162 (276)
T ss_pred HHHHHHhCCC-----------h---HH---HHHHHHh---------CCCcCeeeeCCeEEEEecCccceEcCC-CCcEEE
Confidence 9999999864 3 23 3444332 3599999999987765 343 666653 578999
Q ss_pred EEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCC
Q 045151 234 ITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVS 313 (387)
Q Consensus 234 l~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s 313 (387)
++.|+...+|+++++.++ ....+.. .+ ...+..++.. +|...+...| +. .....
T Consensus 163 v~~P~~~~sT~~a~~~l~--~~~~~~~-----~~----~~~l~~~l~~---------~d~~~~~n~l---~~---~~~~~ 216 (276)
T PRK14612 163 LVNPGVAVSARDAYRWLE--PEDFGPE-----LD----VEAILAALAR---------GEEPPYWNSL---EG---PVFAR 216 (276)
T ss_pred EECCCCCCCHHHHHHhhc--cccCCCc-----cc----HHHHHHHHHh---------cccccccCCc---HH---HHHHh
Confidence 999999999998876542 1111110 00 1122333332 1211111111 11 22245
Q ss_pred CHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCce
Q 045151 314 HSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQ 368 (387)
Q Consensus 314 ~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~ 368 (387)
.|+++++++.+++.| ++++||||| +|+|+++++ ++.++++.+.+++.+..
T Consensus 217 ~p~l~~i~~~l~~~Ga~~~~lSGsG--ptvfal~~~---~~~a~~~~~~l~~~~~~ 267 (276)
T PRK14612 217 HPELQEVLAALRAAGLRGVLMSGSG--STCFGLAED---AAQAQRAAAALRARHPA 267 (276)
T ss_pred ChHHHHHHHHHHhCCCCEEEEcCcc--hhhEEEeCC---HHHHHHHHHHhHhhCCc
Confidence 899999999999999 999999998 899999987 34456677777765443
No 39
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.89 E-value=4.4e-21 Score=178.58 Aligned_cols=248 Identities=19% Similarity=0.198 Sum_probs=159.4
Q ss_pred ceEEEcCceEEEEeccce------eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccC
Q 045151 2 EVKARAPGKIILAGEHAV------VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHL 75 (387)
Q Consensus 2 ~~~~~APgkv~L~GEh~~------~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~ 75 (387)
++.++||+||+|++ |.. ||.-..+.++|+++.++.+++. ++..+++.... . ..
T Consensus 6 ~~~~~apaKiNL~L-~v~~~r~dGyH~l~s~~~~i~l~D~v~i~~~----~~~~~~i~~~~-~--------~~------- 64 (271)
T PRK00343 6 LLDWPAPAKLNLFL-HITGRRADGYHELQTLFQFLDWGDTLHFEVR----DDGEIRLLTPI-P--------GV------- 64 (271)
T ss_pred eEEEeeeeeEEEEe-ecCCcCCCCCCeeeEEEEEcccceEEEEEEC----CCCcEEEeCCC-C--------CC-------
Confidence 45678999999999 421 2333459999999999999864 33345554221 0 00
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHH
Q 045151 76 GSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLT 155 (387)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~ 155 (387)
+.+.|++.++++.+ .. ......+++|.|+++||.++|||||||.++|++
T Consensus 65 ------------~~~~N~v~~a~~~l----------------~~---~~~~~~~~~i~i~k~IP~gaGLGssSs~aaa~l 113 (271)
T PRK00343 65 ------------PEEDNLIVRAARLL----------------QK---ATGTPLGADISLDKRLPMGGGLGGGSSDAATTL 113 (271)
T ss_pred ------------CCcccHHHHHHHHH----------------HH---HhCCCCCeEEEEEcCCCCcCCCCcchHHHHHHH
Confidence 01234555444321 11 111235899999999999999999999999999
Q ss_pred HHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-cccccCCCCceEE
Q 045151 156 AALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-MTCIKSNMPLKML 233 (387)
Q Consensus 156 ~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~~~l~~~~~~~~l 233 (387)
.|++++++.+ +++ ++++++|.+. |.|++++..|+....+ .++ +++++. ++..++
T Consensus 114 ~al~~l~~~~-----------ls~---~el~~la~~i---------gaDvp~~l~g~~~~~~g~g~~~~~l~~-~~~~~v 169 (271)
T PRK00343 114 VALNRLWQLG-----------LSR---DELAELGLKL---------GADVPVFVRGHAAFAEGIGEILTPVDL-PEKWYL 169 (271)
T ss_pred HHHHHHhCCC-----------cCH---HHHHHHHHHh---------CCCceEEecCCcEEEEecCCEEEECCC-CCcEEE
Confidence 9999999976 655 4556776544 4698888888765444 343 556654 456678
Q ss_pred EEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCC
Q 045151 234 ITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVS 313 (387)
Q Consensus 234 l~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s 313 (387)
+++|+.+.+|+++++++. .....+. ..+.. .+.... ..|++.... ..
T Consensus 170 l~~p~~~~sT~~~~~~~~-~~~~~~~------~~~~~-------~~~~~~------~Ndle~~~~-------------~~ 216 (271)
T PRK00343 170 VVKPGVHISTAEIFSDPD-LTRDTPK------ISIAD-------FLAGPF------RNDCEPVVR-------------KR 216 (271)
T ss_pred EEeCCCCcChHHHHhhhh-hccCCCh------hhHHH-------HHhccc------cCCHHHHHH-------------Hh
Confidence 999999999998875432 1111111 00111 111100 023443332 12
Q ss_pred CHHHHHHHHHHhhcCCcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 045151 314 HSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELET 364 (387)
Q Consensus 314 ~p~l~~l~~~a~~~g~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~ 364 (387)
.|++.++.+.+.+.|- +.|||+| +++|+++++ ++.++++.+.+++
T Consensus 217 ~P~~~~~~~~l~~~ga-~~mSGSG--~tvF~l~~~---~~~a~~~~~~l~~ 261 (271)
T PRK00343 217 YPEVAQALSWLLEYAP-SRMTGTG--ACVFAEFDT---EAEAEQVLAQLPE 261 (271)
T ss_pred ChHHHHHHHHHHhCCC-eEEeccc--cceEEEcCC---HHHHHHHHHHhhh
Confidence 8899999988888775 8899998 999999998 3445666666654
No 40
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.87 E-value=1.7e-20 Score=174.45 Aligned_cols=241 Identities=15% Similarity=0.162 Sum_probs=157.7
Q ss_pred EEEcCceEEEE----eccce-eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCC
Q 045151 4 KARAPGKIILA----GEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSP 78 (387)
Q Consensus 4 ~~~APgkv~L~----GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 78 (387)
+..||+||+|+ |-..| ||.-..+-..|+++=++.+++. ++..+++..... .++.
T Consensus 2 ~~~apaKiNL~L~v~~~r~dGyH~l~s~~~~i~l~D~l~i~~~----~~~~~~~~~~~~---------~~~~-------- 60 (269)
T PRK14609 2 ITFPNAKINLGLNVVEKRPDGYHNLETVFYPIPLTDALEITVR----SATKTSLTVSGI---------PIPG-------- 60 (269)
T ss_pred CcCccccEEeeeccCCcCCCCcceeeEEEEECCCCcEEEEEEc----CCCcEEEEeCCC---------CCCC--------
Confidence 46799999998 55554 4455777779999999988753 233344432211 0000
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHH
Q 045151 79 FPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAAL 158 (387)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al 158 (387)
..+.|.+.++++.+ .. . ....+++|+++++||.++|||||||.++|++.|+
T Consensus 61 ---------~~~~Nlv~~a~~~~----------------~~---~-~~~~~~~i~i~k~IP~~aGLGssss~aaa~l~al 111 (269)
T PRK14609 61 ---------DPEDNLVVKAYNLL----------------KK---D-FPLPPVHIHLYKHIPIGAGLGGGSSDAAFMLKLL 111 (269)
T ss_pred ---------CccccHHHHHHHHH----------------HH---H-cCCCCeEEEEecCCCCCCcccHHHHHHHHHHHHH
Confidence 01223444333211 10 1 1235899999999999999999999999999999
Q ss_pred HHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-cccccC-CCCceEEEE
Q 045151 159 LGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-MTCIKS-NMPLKMLIT 235 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~~~l~~-~~~~~~ll~ 235 (387)
+++++.+ +++ ++++++|... |.|++++.+||...+. .|+ +++++. ++++.++++
T Consensus 112 ~~~~~~~-----------l~~---~~l~~la~~i---------GaDvpffl~g~~a~~~G~Ge~l~~l~~~~~~~~~vlv 168 (269)
T PRK14609 112 NDKFNLG-----------LSD---EELEAYAATL---------GADCAFFIRNKPVYATGIGDIFSPIDLSLSGYYIALV 168 (269)
T ss_pred HHHhCCC-----------cCH---HHHHHHHHHh---------CCCceEEccCCCEEEEEeCCeeEECCCCCCCCEEEEE
Confidence 9999875 554 4566777643 5699999999876654 454 566653 367789999
Q ss_pred EeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHh-hcCCCC
Q 045151 236 NTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQ-CMGVSH 314 (387)
Q Consensus 236 ~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~-~~~~s~ 314 (387)
+|+...+|+++++.+... .+.. . +.++.. .+.. +.+...|+.++ .....+
T Consensus 169 ~P~~~~sT~~a~~~l~~~---~~~~---~---~~~~~~-----------------~~~~---~~~~~l~Ndle~~~~~~~ 219 (269)
T PRK14609 169 KPDIHVSTAEAYAGIKPH---KPET---S---LKEIIR-----------------QPVE---EWKNKLVNDFEDSVFPKY 219 (269)
T ss_pred CCCCCCChHHHHHhhhhc---Ccch---h---hHHHHh-----------------hHHH---HHHhhcCCChHHHHHHcC
Confidence 999999999987655321 1110 0 000000 0000 11111133333 344568
Q ss_pred HHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCC
Q 045151 315 SSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPT 348 (387)
Q Consensus 315 p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~ 348 (387)
|+++++++.+++.| ++++||||| +|+|+++++
T Consensus 220 p~l~~i~~~l~~~ga~~~~mSGSG--~tvf~l~~~ 252 (269)
T PRK14609 220 PEIAEIKEKLYRSGALYAAMSGSG--SSVFGIFKK 252 (269)
T ss_pred hHHHHHHHHHHhCCCCeEEEeCcc--ceeEEEECC
Confidence 99999999999998 999999998 999999987
No 41
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=99.87 E-value=6.2e-20 Score=162.95 Aligned_cols=214 Identities=19% Similarity=0.295 Sum_probs=140.2
Q ss_pred CCCCChhHHHHHHHH-HHHHHh-cCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcC-CCcccceeEeecceEE--
Q 045151 141 GAGLGSSAAFCVSLT-AALLGS-LNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGK-PSGLDNTVSTYGNIIK-- 215 (387)
Q Consensus 141 g~GLGSSaA~~va~~-~Al~~~-~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~-~sG~D~~~~~~Gg~i~-- 215 (387)
..||||||+++++++ .+++.+ .+.+ ++ +..+|.++|+.++...+|. +||.|+++++||++++
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~n-----------vd--~k~eIhklaqiAhc~aQggIGSGfDiaaA~fGsiiyrR 173 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATN-----------VD--EKGEIHKLAQIAHCYAQGGIGSGFDIAAAIFGSIIYRR 173 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhcccc-----------ch--hHHHHHHHHHHHHHHHhCCCCccchhhHhhhcceEEee
Confidence 799999999999999 333333 2222 33 2477899999999888865 8889999999999886
Q ss_pred EeCCCcc------cccCCCCceEEEEEeCCCCChHHHHHHHHHHHhhC-hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Q 045151 216 FRSGNMT------CIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRH-PDAMSSVFNAVDSISKELSTIIESPTPDDLS 288 (387)
Q Consensus 216 ~~~~~~~------~l~~~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~ 288 (387)
|.++... .+.+ .++.++..+.+....|..++.++.++++.. |+... .+.++....+..++..+. +
T Consensus 174 F~p~li~~l~qig~~nf-g~y~LmmGd~a~gSeTvglV~kv~~w~ns~~peelk----c~de~nsrvl~l~~~sLd-E-- 245 (337)
T COG3890 174 FEPGLIPKLRQIGAVNF-GDYYLMMGDQAIGSETVGLVCKVNKWRNSILPEELK----CNDEMNSRVLNLIKLSLD-E-- 245 (337)
T ss_pred cCcchhhhhHhhCcccc-cCeeeeecccccCccchHHHHHHHHHhhcCChHHHH----hHHHHHHHHHHHHhhhHH-H--
Confidence 5554322 2233 478999999999999999999999887665 54322 222222223332222100 0
Q ss_pred chHHHHHHHHHHHHHHHHHh-hcC-CCCHHHHHHHHHHhh-cC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 045151 289 ITEKEERLEELMEMNQGLLQ-CMG-VSHSSIETVLRTTLK-FK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELET 364 (387)
Q Consensus 289 ~~~d~~~l~~~~~~~~~~l~-~~~-~s~p~l~~l~~~a~~-~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~ 364 (387)
.....+.+.+.++. ..+ ..+ +.++.+..++....+ .| +++-+.|||+|+.++++..+. -++++.|+.
T Consensus 246 ~~s~~~~irrslrr---itee~~adiep~kqt~~Ld~i~~l~gvl~~lipgaGggdaif~l~~~~------~e~re~w~~ 316 (337)
T COG3890 246 SNSKSKAIRRSLRR---ITEEGLADIEPIKQTAALDSIFDLLGVLCDLIPGAGGGDAIFLLYRPN------IEAREAWLS 316 (337)
T ss_pred HHHHHHHHHHHHHH---HHHHhccccccchhhhhhhhHHhccCceEeecccCCCCceEEEEeccc------HHHHHHHHh
Confidence 00112222222221 111 111 345555555554444 47 899999999999999999884 246668999
Q ss_pred CCceEEEeeecCCceEEEecc
Q 045151 365 CGFQCLIAGIGGTGVEVCFGG 385 (387)
Q Consensus 365 ~g~~~~~~~~~~~G~~v~~~~ 385 (387)
.|...+.++ .-+|+++|.++
T Consensus 317 ~gi~i~dv~-adeGlr~Esd~ 336 (337)
T COG3890 317 KGISIVDVN-ADEGLRFESDK 336 (337)
T ss_pred CCeEEEEcc-cccccccccCC
Confidence 998877777 56899999875
No 42
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=99.87 E-value=1.7e-19 Score=163.67 Aligned_cols=373 Identities=20% Similarity=0.254 Sum_probs=219.7
Q ss_pred CceEEEcCceEEEEeccceee-CCeeeEeeeccceEEEEEccCCC--CCCCcEEEEecCCC-cee--eeehhhHHhhhcc
Q 045151 1 MEVKARAPGKIILAGEHAVVH-GSTAVAACIDLYTYVSLRFPSDS--DDDDTLKLVLKDME-LNF--SWSVTRIKATLSH 74 (387)
Q Consensus 1 ~~~~~~APgkv~L~GEh~~~~-g~~~l~~ai~~~~~~~v~~~~~~--~~~~~v~i~~~~~~-~~~--~~~l~~~~~~~~~ 74 (387)
|...++||||+.+.|+|.|+. -+.+++..++.|.|+.+.+--.. .+...||+.|+++. .++ ++++...+-....
T Consensus 1 M~v~~SAPGKvL~aGGYlVLd~~y~glV~gl~Ar~yAi~~p~~~~~g~~~~~VrvkSpQf~d~EwlY~is~~~~~i~v~~ 80 (459)
T KOG4519|consen 1 MAVVASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEVGPEWTDVRVKSPQFSDREWLYKISLNHLTIQVVS 80 (459)
T ss_pred CcceecCCCceEEecceEEecCCcceeEEeeeceeEEEeeccccccCCccceeEecCcccccchheeecccccceeEEEe
Confidence 778899999999999999998 77889999999999998764111 12245999999985 333 2222211110000
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHhhcCCcc------cccccc-hhHHHHHHHHHhh-hCccCe-EEEEEe-cCC--CCC
Q 045151 75 LGSPFPSTPTTCSMEVIKSIAVLVDEQNIPE------AKIGLS-SGATAFLWLYTSI-IGFKPA-TVVVTS-DLP--LGA 142 (387)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~-~g~~~~~~~~~~~-~~~~~~-~i~i~s-~iP--~g~ 142 (387)
.+ .+.++-....|..++..+...+ +.+.++ .+...+++..-.. ....++ ++...+ ++| ...
T Consensus 81 -~~------~s~NPFve~ai~yvi~yf~~~~~~~lc~q~L~Vt~l~sddaY~~qp~s~~~~~~~~~~~F~~~~~~eV~KT 153 (459)
T KOG4519|consen 81 -AS------DSRNPFVEHAIQYVIAYFHLATLHKLCLQGLDVTILGSDDAYSYQPESLGTLAPFASITFNAAEKPEVAKT 153 (459)
T ss_pred -cC------CCCCcHHHHHHHHHHHHhhhccchhHHhcCceEEEeecccccccCcccccccCCCCceeeecccccccccc
Confidence 00 0012222233333333322110 000011 1111111100000 001111 333332 355 479
Q ss_pred CCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcC-CCcccceeEeecceEE--EeCC
Q 045151 143 GLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGK-PSGLDNTVSTYGNIIK--FRSG 219 (387)
Q Consensus 143 GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~-~sG~D~~~~~~Gg~i~--~~~~ 219 (387)
|||||||++.+++.++...++.-..+.. .....++..+++-|..+|+.++...+|+ +||.|+.++.||...+ |.+.
T Consensus 154 GLGSSAam~T~lv~~ll~sl~~~~~d~~-~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS~rYrRF~P~ 232 (459)
T KOG4519|consen 154 GLGSSAAMTTALVAALLHSLGVVDLDDP-CKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGSQRYRRFSPE 232 (459)
T ss_pred CccchHHHHHHHHHHHHHhhcceecCCC-ccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccceeeeeCCHH
Confidence 9999999999999888877754311100 1122255556788899999999999998 7889999999998643 2111
Q ss_pred Ccc-----------------------------cccCCCCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHH-------
Q 045151 220 NMT-----------------------------CIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSS------- 263 (387)
Q Consensus 220 ~~~-----------------------------~l~~~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~------- 263 (387)
-++ ...+|+.+.++..+-....+|..++.++.++....|....+
T Consensus 233 lis~lp~~i~~~~~~~el~~~V~k~~W~~~~~~f~LP~~~~L~mGd~~gGSsTp~mV~kVk~Wq~s~~pe~~k~~~~ldd 312 (459)
T KOG4519|consen 233 LISFLPQVIVTGLPLNELIGTVLKGKWDNKRTEFSLPPLMNLFMGDGSGGSSTPSMVGKVKKWQMSDPPEARKNWQNLDD 312 (459)
T ss_pred HHHHHHHHHhccChhHHHHHHhhhhhcccccccccCCceeeeeeecCCCCCCcHHHHHHHHHHhhcCChhHhhhhcchhh
Confidence 000 01246678888888777889999999999887666332222
Q ss_pred ----HHHHHHHHHHHH-------HHHHcCCC---CCCCcchHHHHHHHHHHHHHHHHHhh------cCCCCHHHHHHHHH
Q 045151 264 ----VFNAVDSISKEL-------STIIESPT---PDDLSITEKEERLEELMEMNQGLLQC------MGVSHSSIETVLRT 323 (387)
Q Consensus 264 ----~~~~i~~i~~~~-------~~~l~~~~---~~~~~~~~d~~~l~~~~~~~~~~l~~------~~~s~p~l~~l~~~ 323 (387)
+++.+..+..-. .+.++... .++..+ ..+-.+.+.|..-..++|. ..+.++....+++.
T Consensus 313 ansr~~~~l~kl~~l~~~h~d~~~~v~eSl~~~~~~~~~~-~e~~E~r~a~~~IRr~~r~it~ea~vdIEP~~QT~lLD~ 391 (459)
T KOG4519|consen 313 ANSRLETKLNKLSKLAKDHWDVYLRVIESLSVLTINEAII-KELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDS 391 (459)
T ss_pred HHHHHHhhhhhhhHhhhhchhHHHHHHhhcccccchhhhh-hHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhHhhh
Confidence 222222221110 11222110 000000 1112233334333344432 23567777788888
Q ss_pred Hhhc-C-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecCCceEEEec
Q 045151 324 TLKF-K-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEVCFG 384 (387)
Q Consensus 324 a~~~-g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~G~~v~~~ 384 (387)
+... | +++.+.||||-+.+++++..+ -+...++.+.|+..+...+.++.+..|++++.+
T Consensus 392 ~~sl~GVl~~gvPGAGGfDAif~it~~d--vd~~~~~~~~w~~~~V~~ldV~~a~~Gv~~E~d 452 (459)
T KOG4519|consen 392 TMSLEGVLLAGVPGAGGFDAIFAITLGD--VDSGTKLTQAWSSHNVLALDVREAPHGVCLESD 452 (459)
T ss_pred hhcccceEEecccCCCCcceEEEEeecc--hhHHHHHHhhhcccCeeEEeeeeCCCcceeccC
Confidence 8776 7 999999999999999998775 256778899999999888999999999999865
No 43
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.85 E-value=3.2e-19 Score=168.23 Aligned_cols=274 Identities=15% Similarity=0.092 Sum_probs=164.3
Q ss_pred EcCceEEEE----eccce-eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCcee-eeehhhHHhhhccCCCCC
Q 045151 6 RAPGKIILA----GEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNF-SWSVTRIKATLSHLGSPF 79 (387)
Q Consensus 6 ~APgkv~L~----GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~-~~~l~~~~~~~~~~~~~~ 79 (387)
.||+||+|+ |-..| ||.-..+-..|+++=++.+++. .+..+++......... .+-..+++..
T Consensus 2 ~apAKINL~L~I~gkr~dGyH~l~s~~~~i~l~D~l~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 69 (297)
T PRK14613 2 ISPAKINLGLEIPFKREDGFHEIRSVFLKISWGDDIEIEPA----PNGVFELFSTNEIILEKRKLYDQVSER-------- 69 (297)
T ss_pred CCCceEeeeecCCCcCCCCcceeeeEEEEeccCCEEEEEEC----CCCcEEEEecccccccccccccccCCC--------
Confidence 589999998 66666 5566788889999999999763 2233555432110000 0000001000
Q ss_pred CCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHH
Q 045151 80 PSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALL 159 (387)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~ 159 (387)
.+ .. .|.+.++++. |.. ......+++|+|+++||.++|||||||.+++++.+++
T Consensus 70 --~~--~~---~Nlv~ka~~~----------------~~~---~~~~~~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~ 123 (297)
T PRK14613 70 --GD--IK---QNILYKTFIK----------------ARS---LFPELPGVKIHLTKRISPAGGLGGGSTNAASLLNFLF 123 (297)
T ss_pred --CC--cc---cchHHHHHHH----------------HHH---HhCCCCCeEEEEEeCCCccCCccccHHHHHHHHHHHH
Confidence 00 00 1333332221 111 1112358999999999999999999999988888887
Q ss_pred HhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-cccccCCCCceEEEEEe
Q 045151 160 GSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-MTCIKSNMPLKMLITNT 237 (387)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~~~l~~~~~~~~ll~~t 237 (387)
..+++ +. .+++.++|... |.|+++++.|+...++ .++ +++++.++.+. +++.|
T Consensus 124 ~~~~l-------------~~--~e~L~~lA~~l---------GaDvP~~l~G~~a~~~g~Ge~~~~l~~~~~~~-vlv~P 178 (297)
T PRK14613 124 SWRNF-------------FT--SDEMQVFAKEI---------GSDVPFFLGEGHAFVTGKGEIMEEIEVHKGQG-ILALT 178 (297)
T ss_pred hcCCC-------------Cc--HHHHHHHHHHh---------CCccchhhcCCeEEEecCCcEEEEcCCCCCeE-EEEEC
Confidence 75543 22 13455566654 3498888888765544 343 56666555544 67889
Q ss_pred CCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHH-HHHHHHHhhcCCCCHH
Q 045151 238 KVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELM-EMNQGLLQCMGVSHSS 316 (387)
Q Consensus 238 ~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~-~~~~~~l~~~~~s~p~ 316 (387)
+.+.+|+++++.+.+....... ... .+.....+..++.. +|++.+...| +..+.....+ .|+
T Consensus 179 ~~~vsT~~a~~~l~~~~~~~~~--~~~---~~~~~~~~~~al~~---------~~~~~l~~~l~ndle~~~~~l---~P~ 241 (297)
T PRK14613 179 PQVMNTGEMYALLKKPLQESAS--QKN---GNTLSEDLISSLKV---------GDWVSLQGRLENDFEPVAFQL---HPE 241 (297)
T ss_pred CCCcChHHHHHhcchhhccccc--ccc---ccccHHHHHHHHHc---------CCHHHHHHHhcccchHHHHHh---CcH
Confidence 9999999987654322111000 000 11112234444544 5666664443 4443333333 899
Q ss_pred HHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 045151 317 IETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELET 364 (387)
Q Consensus 317 l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~ 364 (387)
++++++.+.+.| ++++||||| +|+|+++++. +.++++.+.+++
T Consensus 242 ~~~i~~~~~~~Ga~~~~mSGSG--ptvf~l~~~~---~~a~~~~~~l~~ 285 (297)
T PRK14613 242 LGVLKDKFLEFGSSYCSLTGSG--SSMYGLVQGL---EIQEELLPRLRQ 285 (297)
T ss_pred HHHHHHHHHHcCCCEEEEEccc--cceEEEeCCH---HHHHHHHHHHHH
Confidence 999999999999 999999997 9999999873 344555555544
No 44
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.84 E-value=9.1e-19 Score=160.74 Aligned_cols=271 Identities=18% Similarity=0.200 Sum_probs=167.1
Q ss_pred CceEEEcCceEEEE----eccce-eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccC
Q 045151 1 MEVKARAPGKIILA----GEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHL 75 (387)
Q Consensus 1 ~~~~~~APgkv~L~----GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~ 75 (387)
|++.+.||+|++|+ |-..| ||.--.+-..||.+-.+.++.. +++.+.+..+.. ..++
T Consensus 2 ~~~~~~apAKiNL~L~V~gkr~DGYHel~sl~~~id~~D~l~i~~~----~~~~~~~~~~~~--------~~lp------ 63 (289)
T COG1947 2 MSTKFPAPAKINLFLHVTGKRADGYHELETLFQFIDLGDELTIRPR----DDDGFIVLGTFA--------DGLP------ 63 (289)
T ss_pred cceEeeccceEEEEEEecccCCCCceeeEEEEEEeccCCEEEEEEC----CCCCceEecCCC--------CCCC------
Confidence 56789999999998 66665 4455777789999999998875 333333322100 1111
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHH
Q 045151 76 GSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLT 155 (387)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~ 155 (387)
.++ |.+.+..+.+ .. ......+++|.|+++||+++|||+.||.+++++
T Consensus 64 -----------~~~--NLv~rAa~ll----------------~~---~~~~~~~v~I~l~K~IPv~aGLGGGSSdAAa~L 111 (289)
T COG1947 64 -----------TDE--NLVYRAAELL----------------RK---RTGIAGGVSIHLDKNIPVGAGLGGGSSDAAAVL 111 (289)
T ss_pred -----------Ccc--hHHHHHHHHH----------------HH---HhCCCCCeeEEEEecCcccCcCccchHHHHHHH
Confidence 111 3333222211 11 112345799999999999999999999999999
Q ss_pred HHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-cccccCCCCceEE
Q 045151 156 AALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-MTCIKSNMPLKML 233 (387)
Q Consensus 156 ~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~~~l~~~~~~~~l 233 (387)
.+||++++.. ++.+ ++..++.+ -|.|+++|++||..... .|+ +++++-++...++
T Consensus 112 ~~Ln~lw~~~-----------ls~~---eL~~Lg~~---------LGaDVPffl~g~tA~a~G~GE~l~~~~~~~~~~~v 168 (289)
T COG1947 112 VALNELWGLG-----------LSLE---ELAELGLR---------LGADVPFFLSGGTAFAEGRGEKLEPLEDPPEKWYV 168 (289)
T ss_pred HHHHHHhCCC-----------CCHH---HHHHHHHH---------hCCCcCeeeeCCceEEEEccceeeECCCCCCceEE
Confidence 9999999986 6654 44555433 46799999999865444 555 6777756778889
Q ss_pred EEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhh-cCC
Q 045151 234 ITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQC-MGV 312 (387)
Q Consensus 234 l~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~-~~~ 312 (387)
+++|++..+|+++.+. .......+.. . ....++.. ++++.+.+. .++.|+. .--
T Consensus 169 l~~P~v~vsT~~vy~~-~~~~~~~~~~-~-----------~~~~~~~~---------~~~~~~~~~---~~NdLe~~~~~ 223 (289)
T COG1947 169 LAKPGVGVSTKEVYKD-PELTRNTPKS-E-----------PLIAALSL---------ENLKQIAPF---LINDLEKVALR 223 (289)
T ss_pred EEeCCCCCChHHHHcC-cCcccccCCc-h-----------hhhHHHhh---------hhHhhhccc---cccchHHHHHH
Confidence 9999999999988651 1111111110 0 00000100 111111111 1122221 011
Q ss_pred CCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHC--CceEEEeee
Q 045151 313 SHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETC--GFQCLIAGI 374 (387)
Q Consensus 313 s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~--g~~~~~~~~ 374 (387)
..|++........+.| ..++|||+| +|+|+++++. +.++++.+.+.+. ++.+..+++
T Consensus 224 ~~p~v~~~~~~l~~~ga~~~~mSGSG--stvF~l~~~~---~~a~~~~~~l~~~~~~~~~~~~~~ 283 (289)
T COG1947 224 LYPEVKEALSELLEYGALPARMSGSG--STVFALFDTE---KEAQRVAEQLPKGVCGWVVKGVRL 283 (289)
T ss_pred hChHHHHHHHHHhhcccccceEecCC--CcEEEEeCCh---HHHHHHHHHhhcccCCcEEEEeec
Confidence 2678888777777777 899999999 9999999984 3455555555542 234444443
No 45
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.83 E-value=2.9e-18 Score=160.79 Aligned_cols=263 Identities=16% Similarity=0.227 Sum_probs=162.6
Q ss_pred ceEEEcCceEEEE----eccce-eeCCeeeEeeeccceEEEEEccCCCCCC-CcEEEEecCCCceeeeehhhHHhhhccC
Q 045151 2 EVKARAPGKIILA----GEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDD-DTLKLVLKDMELNFSWSVTRIKATLSHL 75 (387)
Q Consensus 2 ~~~~~APgkv~L~----GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~-~~v~i~~~~~~~~~~~~l~~~~~~~~~~ 75 (387)
.+.+.||+||+|+ |-..| ||.-..+-++++.+-++.+++. ++ ..+++.... ++ +.
T Consensus 3 ~~~~~apAKINL~L~v~g~r~dGyH~l~s~~~~i~l~D~l~i~~~----~~~~~~~~~~~~-------~~---~~----- 63 (283)
T PRK14610 3 KFLVKAPAKINLFLHIVGKSESGYHLLESLFVFVNLYDFLEIKIG----SKNRGVEFVNSL-------KI---NR----- 63 (283)
T ss_pred ceEEeecceEEeeeccCCcCCCCcchhheeeEEcCCCCEEEEEEC----CCCCeEEEeCCC-------CC---CC-----
Confidence 3578999999998 55555 5566778889999999999864 22 234443110 00 00
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHH
Q 045151 76 GSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLT 155 (387)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~ 155 (387)
. .|.+.++++.+ .. .....++++|+++++||.++|||||||.++|++
T Consensus 64 -----------~---~Nlv~kA~~~l----------------~~---~~~~~~g~~i~i~K~IP~~aGLGggSs~aaa~L 110 (283)
T PRK14610 64 -----------Y---NNTVQRAIGLL----------------LR---HSPVRTNVYVKVIKNIPVSAGLAGGSADAAAVI 110 (283)
T ss_pred -----------C---CcHHHHHHHHH----------------HH---HhCCCCCeEEEEEcCCCCCCcCCccHHHHHHHH
Confidence 0 12232222211 10 111234899999999999999999999999999
Q ss_pred HHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-cccccC-CCCceE
Q 045151 156 AALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-MTCIKS-NMPLKM 232 (387)
Q Consensus 156 ~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~~~l~~-~~~~~~ 232 (387)
.++++++++ +. +++.++|.. .|.|++++++||....+ .|+ +++++. +.+..+
T Consensus 111 ~~ln~l~~l-------------s~---~~l~~ia~~---------lGaDvPffl~g~~a~~~G~Ge~l~~l~~~~~~~~~ 165 (283)
T PRK14610 111 RLLGKLWGI-------------DE---QILNELALS---------VGSDVPACLDSKTLFVRGIGEDILLLPDLSLPTYV 165 (283)
T ss_pred HHHHHHhCC-------------CH---HHHHHHHHH---------hCCCCcEEEECCeEEEEecccEEEECcccCCCCeE
Confidence 999999963 33 344555543 57899999999987554 454 666642 234458
Q ss_pred EEEEe-CCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcC
Q 045151 233 LITNT-KVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMG 311 (387)
Q Consensus 233 ll~~t-~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~ 311 (387)
+++.| ++..+|+++++.+.......+ .+.+ .+. .+++. +++...++.++.+.
T Consensus 166 vl~~p~~~~~sT~~vy~~~~~~~~~~~------~~~~---------~~~---------~~~~~---~~~~~~~Ndle~~~ 218 (283)
T PRK14610 166 VLVAPKGKFLSTRKVFNKYECKAFSEP------IDNL---------PVA---------QDDLL---ELLKEARNDLLETA 218 (283)
T ss_pred EEEECCCCccChHHHHHhhcccccCCc------cccc---------ccc---------hhHHH---HHHHHhcCchHHHH
Confidence 88878 688999998765421000000 0000 000 02222 11222234444222
Q ss_pred -CCCHHHHHHHHHHhhc-C-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHC--CceEEEee
Q 045151 312 -VSHSSIETVLRTTLKF-K-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETC--GFQCLIAG 373 (387)
Q Consensus 312 -~s~p~l~~l~~~a~~~-g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~--g~~~~~~~ 373 (387)
-.+|++.++++.+++. | +++.||||| +|+|+++++ ++.++++.+.+++. ++.++.+.
T Consensus 219 ~~l~P~l~~~~~~l~~~~ga~~a~mSGSG--sTvf~l~~~---~~~a~~~~~~l~~~~~~~~~~~~~ 280 (283)
T PRK14610 219 ISLVPEIEEILFVLESLEGCILSRMSGSG--ATCFALFEE---EEAAEAAARYLKMTRPEWWVFNTK 280 (283)
T ss_pred HHhChHHHHHHHHHHhcCCCceEEEeCcc--cceeEEeCC---HHHHHHHHHHhhhhCCceEEEEEE
Confidence 2389999999988764 6 899999999 899999987 34456677777654 34444443
No 46
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.78 E-value=1.1e-16 Score=142.75 Aligned_cols=201 Identities=20% Similarity=0.193 Sum_probs=140.9
Q ss_pred CeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc--cce
Q 045151 129 PATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL--DNT 206 (387)
Q Consensus 129 ~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~--D~~ 206 (387)
++++.++|+||.++||.||||++.|++.|+..+.+.. +++ .+++++..++-...-=+-+|. |..
T Consensus 70 ~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~-----------~~~---~~i~~l~a~~S~~aGvSvTGA~DDa~ 135 (278)
T COG1685 70 GVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEE-----------IDD---FEILRLGARASKEAGVSVTGAFDDAC 135 (278)
T ss_pred ceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCC-----------CCh---hHHHHHHHHHHHhcCceEeccchHHH
Confidence 7899999999999999999999999999999999975 443 456676666655433346775 567
Q ss_pred eEeecceEEEeCCCcccccC--CCCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCC
Q 045151 207 VSTYGNIIKFRSGNMTCIKS--NMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTP 284 (387)
Q Consensus 207 ~~~~Gg~i~~~~~~~~~l~~--~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~ 284 (387)
+++|||++..++.+.+.+.. .+++.++|.-|+.++.++++ +++. ++.+....+.+.+.-..
T Consensus 136 AS~~GG~~iTDN~~m~Ilrr~~~~~~~vlI~~p~~k~~~~~v--dv~~------------~r~~a~~~e~A~~lA~~--- 198 (278)
T COG1685 136 ASYLGGIVITDNRKMRILRRLDLPELTVLILAPGEKRLSANV--DVNR------------LRLIAPVVEEAFRLALK--- 198 (278)
T ss_pred HHHhCCeEEecchhheehhccccCCceEEEEecCCccccccC--CHHH------------HHHhhHHHHHHHHHHhc---
Confidence 89999987776655333322 36788888888877665432 1111 11222223333332222
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 045151 285 DDLSITEKEERLEELMEMNQGLLQ-CMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTEL 362 (387)
Q Consensus 285 ~~~~~~~d~~~l~~~~~~~~~~l~-~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~ 362 (387)
++| .++|..|..++. .+|.... +...+.+.| .++.+||.| |+++++++++ +.+.+.|
T Consensus 199 ------G~~---~~Am~lNG~~y~~aLG~~~e----~~~~ale~GA~~aglSGtG--Pa~~Al~~~~------~~v~ea~ 257 (278)
T COG1685 199 ------GEY---FKAMVLNGILYCSALGYDLE----PALKALEAGAAAAGLSGTG--PAYFALTEDP------EEVAEAW 257 (278)
T ss_pred ------ccH---HHHHHHhHHHHHHHhCCChH----HHHHHHhcccceeccCCCC--CceEEEecCc------HHHHHHH
Confidence 454 477887877766 7887653 344567787 899999888 9999999984 5678888
Q ss_pred HHCCceEEEeeecCCceEEE
Q 045151 363 ETCGFQCLIAGIGGTGVEVC 382 (387)
Q Consensus 363 ~~~g~~~~~~~~~~~G~~v~ 382 (387)
.+. ++|+.+++.+.+.+.-
T Consensus 258 ~~~-G~V~~t~~~~~~~~~~ 276 (278)
T COG1685 258 SKI-GDVIETRNVGERARDY 276 (278)
T ss_pred HhC-CeEEEEecCCCCceec
Confidence 888 5999999988887653
No 47
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.78 E-value=6.8e-17 Score=150.08 Aligned_cols=231 Identities=17% Similarity=0.128 Sum_probs=149.6
Q ss_pred EEEcCceEEEE----eccce-eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCC
Q 045151 4 KARAPGKIILA----GEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSP 78 (387)
Q Consensus 4 ~~~APgkv~L~----GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 78 (387)
.+.||+||+|+ |--.| ||.-..+-..|+.+=++.+++. +...+++.... .++.
T Consensus 2 ~~~apAKINL~L~V~gkR~DGYH~l~sl~~~i~l~D~l~i~~~----~~~~i~i~~~~----------~~~~-------- 59 (288)
T PRK00650 2 HFFSPAKLNLFLQLLGKREDGFHEIVTRYQAIAFGDQLSLSIS----SRDSLQVINAC----------HLET-------- 59 (288)
T ss_pred CccccceEEeeeccCCcCCCCCcceeEEEEEcCCCCEEEEEEC----CCCcEEEeCCC----------CCCc--------
Confidence 35799999998 66666 5667888889999999999763 22334442100 0000
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHH
Q 045151 79 FPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAAL 158 (387)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al 158 (387)
. .|.+.++++.+ .. ......+++|.++++||.++|||||||.++|++.++
T Consensus 60 --------~---~Nlv~ra~~~l----------------~~---~~g~~~~v~I~i~K~IP~gaGLGggSS~aAa~L~~l 109 (288)
T PRK00650 60 --------P---SNSIWKSVALF----------------RR---YTGITTPVSWRVVKQIPIGAGLAGGSSNAATALFAL 109 (288)
T ss_pred --------c---ccHHHHHHHHH----------------HH---HhCCCCCeEEEEeeCCCCcCCcCcchhHHHHHHHHH
Confidence 0 12232222211 10 011134799999999999999999999999999999
Q ss_pred HHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-cccccCCCCceEEEEE
Q 045151 159 LGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-MTCIKSNMPLKMLITN 236 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~~~l~~~~~~~~ll~~ 236 (387)
+++++.+ +++ +++.++|.+.| .|+++++.||..... .|+ +++++.+++++++++.
T Consensus 110 n~l~~~~-----------ls~---~eL~~lA~~lG---------aDvPffl~~g~a~~~G~Ge~l~~~~~~~~~~~vlv~ 166 (288)
T PRK00650 110 NQIFQTG-----------LSD---EELRSLAEKIG---------MDTPFFFSTGSALGVGRGEKIIALEESVSDRYVLYF 166 (288)
T ss_pred HHHhCCC-----------cCH---HHHHHHHHHhC---------CcchhhhcCceEEEEecCCEEEECcCCCCceEEEEe
Confidence 9999876 655 44566666543 499999998876555 554 6777655667899999
Q ss_pred eCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCHH
Q 045151 237 TKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSS 316 (387)
Q Consensus 237 t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~p~ 316 (387)
|+...+|+++++.... .... . ... +... ..|++...- -..|+
T Consensus 167 P~~~vsT~~ay~~~~~---~~~~----~-------~~~----~~~~-------~Ndle~~~~-------------~~~p~ 208 (288)
T PRK00650 167 SSEGVLTSRAFAYVQP---SDCS----S-------RKN----LEYT-------QNDLEKPVF-------------RLRLD 208 (288)
T ss_pred CCCCCChHHHHHhhcc---cccc----h-------hhH----hccC-------CCchHHHHH-------------HhChH
Confidence 9999999987643210 0000 0 000 0100 012221111 12788
Q ss_pred HHHHHHHHhhcC--Cc--ccccCCCCCCeEEEEeCCC
Q 045151 317 IETVLRTTLKFK--LA--SKLTGAGGGGCALTLLPTL 349 (387)
Q Consensus 317 l~~l~~~a~~~g--~g--aklsGaG~Gg~v~al~~~~ 349 (387)
+.++++.+.+.| .+ +.|||+| +|+|++++++
T Consensus 209 i~~~~~~l~~~~~~~~~~~~MSGSG--st~F~l~~~~ 243 (288)
T PRK00650 209 LKEKKHWLESLWAELPVHVGLTGSG--ATLFVRYPEI 243 (288)
T ss_pred HHHHHHHHHhccccCCCeEEEeCcc--cCEEEEeCCH
Confidence 999998888864 24 6799998 9999999873
No 48
>PRK05905 hypothetical protein; Provisional
Probab=99.77 E-value=5.4e-17 Score=148.76 Aligned_cols=240 Identities=15% Similarity=0.142 Sum_probs=147.1
Q ss_pred EEEcCceEEEE----eccce--eeCCeeeEeee-ccceEEEEEccCCCCCC--CcEEEEecCCCceeeeehhhHHhhhcc
Q 045151 4 KARAPGKIILA----GEHAV--VHGSTAVAACI-DLYTYVSLRFPSDSDDD--DTLKLVLKDMELNFSWSVTRIKATLSH 74 (387)
Q Consensus 4 ~~~APgkv~L~----GEh~~--~~g~~~l~~ai-~~~~~~~v~~~~~~~~~--~~v~i~~~~~~~~~~~~l~~~~~~~~~ 74 (387)
++.||+||+|+ |--.| ||.-..+-..| +++=++.+++. ++ ..+++...... .+.
T Consensus 2 ~~~apAKINL~L~I~gkR~DdGYHel~sv~~~i~~l~D~l~i~~~----~~~~~~i~~~~~~~~---------~~~---- 64 (258)
T PRK05905 2 KYKSYAKINLGLSIYKKCKKVTKHKLESIFILVENVYDDIEIEKI----EKNIDDIHYFDETNE---------ILV---- 64 (258)
T ss_pred cccccceEEeeeeecccCCCCCCcceeEEEEEccccccEEEEEEC----CCCCceEEEeCCCcC---------CCC----
Confidence 46799999997 66675 67777888899 99999998763 22 23444221100 000
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHH
Q 045151 75 LGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSL 154 (387)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~ 154 (387)
..+.-+.+.++.+.+ .....++++|.++++||.++|||||||.++++
T Consensus 65 ----------~~nli~~ka~~~l~~-----------------------~~~~~~~~~i~l~K~IP~~aGLGggSSDAAa~ 111 (258)
T PRK05905 65 ----------YSRLILVKTLEWLRD-----------------------KYNIKNHFKIKIKKRIPIGSGLGSGSSNAAVL 111 (258)
T ss_pred ----------CcchHHHHHHHHHHH-----------------------HhCCCCCeEEEEEeCCCCcCCCCCCchHHHHH
Confidence 000011122221111 11123579999999999999999999999999
Q ss_pred HHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeec-ceEEEe-CCC-cccccCCCCce
Q 045151 155 TAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYG-NIIKFR-SGN-MTCIKSNMPLK 231 (387)
Q Consensus 155 ~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~G-g~i~~~-~~~-~~~l~~~~~~~ 231 (387)
+.+|++++++ +. +++.++|.. -|.|+++|++| +....+ .|+ +++++.+++..
T Consensus 112 L~~Ln~l~~l-------------s~---~~L~~ia~~---------lGADVPFfl~g~~~a~~~G~GE~l~pl~~~~~~~ 166 (258)
T PRK05905 112 MKWILEFEGI-------------NE---INYKDVVNK---------LGSDIPFFLSGYKTAYISDYGSQVEDLIGQFKLT 166 (258)
T ss_pred HHHHHHHhCC-------------CH---HHHHHHHHH---------hCCCcceEEeCCccEEEEeeCceeEECCCCCCce
Confidence 9999999974 33 334454432 46799999999 876554 565 67775544567
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHh-hc
Q 045151 232 MLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQ-CM 310 (387)
Q Consensus 232 ~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~-~~ 310 (387)
++++.|+...||+++++.+.......+...... +. .+.. . .... .++.|+ ..
T Consensus 167 ~vlv~P~~~vST~~vY~~~~~~~~~~~~~~~~~---~~--------~~~~---------~----~~~~---~~NdLe~~a 219 (258)
T PRK05905 167 YKVIFMNVNVSTKKVFEKFDDNQHVIKNNFKTI---IK--------NLKE---------N----IVVN---IHNDLQEPC 219 (258)
T ss_pred EEEECCCCCCCHHHHHHhhccccCCcccchHHH---HH--------HHHH---------h----hhcc---cccccHHHH
Confidence 999999999999998764321100000000000 10 0100 0 0000 122232 11
Q ss_pred CCCCHHHHHHHHHHhhcCCcccccCCCCCCeEEEEeC
Q 045151 311 GVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLP 347 (387)
Q Consensus 311 ~~s~p~l~~l~~~a~~~g~gaklsGaG~Gg~v~al~~ 347 (387)
--.+|++.++++...+.|..+.||||| +|+|++-.
T Consensus 220 ~~~~P~i~~~~~~l~~~g~~a~MSGSG--stvF~l~~ 254 (258)
T PRK05905 220 FELYPNLLYKYNELLNDGFYTILSGAG--SSFIVIKK 254 (258)
T ss_pred HHhChHHHHHHHHHHhCCCCEEEeCcc--hhheEEee
Confidence 123899999988888877778899999 89998754
No 49
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.75 E-value=5.1e-16 Score=139.82 Aligned_cols=222 Identities=16% Similarity=0.213 Sum_probs=160.2
Q ss_pred cCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCccccee
Q 045151 128 KPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTV 207 (387)
Q Consensus 128 ~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~ 207 (387)
.+++|+|.+.+|...||||.+.++.|+..|+++++++. + ++.+||... -.|..||+-.++
T Consensus 70 ~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~-----------~---~~~elA~~v------gRG~tSgiGv~a 129 (312)
T COG1907 70 EGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLE-----------L---SIRELAFAV------GRGGTSGIGVYA 129 (312)
T ss_pred CceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCC-----------C---CHHHHHHHH------ccCCccceeEEE
Confidence 57899999999999999999999999999999999986 3 334444322 346779999999
Q ss_pred EeecceEEEeCCC------------cccccCCCCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHH
Q 045151 208 STYGNIIKFRSGN------------MTCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKEL 275 (387)
Q Consensus 208 ~~~Gg~i~~~~~~------------~~~l~~~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 275 (387)
+-+||+|.= .|. +.+..+|.+|+|+|+.|..++.-.+- ..++-..+.||-..+ ..+.+.++. +
T Consensus 130 fe~GGFIVD-GGh~~~f~ps~~sP~I~R~dfPedW~~VlaIP~~~rg~~~~-~E~~if~~~~p~p~~-~~~~ls~~v--L 204 (312)
T COG1907 130 FEYGGFIVD-GGHSFGFLPSSASPLIFRLDFPEDWRFVLAIPEVERGVSGR-REVDIFKKYCPVPLE-EVGELSHRV--L 204 (312)
T ss_pred EEECCEEEE-CCcccCcccCCCCceeeeecCCCceEEEEEecCCCccccch-HHHHHHHhcCCCCHH-HHHHHHHHH--H
Confidence 999998742 221 12234577999999999987632111 111112222332211 223333322 2
Q ss_pred HHHHcCCCCCCCcchHHHHHHHHHHHHHHHHH----h--hcCCCCHHHHHHHHHHhhcCCcccccCCCCCCeEEEEeCCC
Q 045151 276 STIIESPTPDDLSITEKEERLEELMEMNQGLL----Q--CMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTL 349 (387)
Q Consensus 276 ~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l----~--~~~~s~p~l~~l~~~a~~~g~gaklsGaG~Gg~v~al~~~~ 349 (387)
+.++.. ++++|++.|++.+++-|.+. + .-..-++.+..+++.+.+..+++.+| -||+++|+++++.
T Consensus 205 m~mmPa------vvE~Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~a~~agqS--SwGPtvY~i~d~~ 276 (312)
T COG1907 205 MKMMPA------VVERDIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEAAYGAGQS--SWGPTVYGIVDSR 276 (312)
T ss_pred HHHhHH------HHhhCHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHhccccccc--ccCCEEEEecccc
Confidence 333322 23589999999999877776 2 33466889999999999888888887 6889999999997
Q ss_pred CCHHHHHHHHHHHHHCC--ceEEEeeecCCceEEE
Q 045151 350 LSATVVEKVTTELETCG--FQCLIAGIGGTGVEVC 382 (387)
Q Consensus 350 ~~~~~~~~i~~~~~~~g--~~~~~~~~~~~G~~v~ 382 (387)
...+.+.++.+.+.++| ..++++++.|.|+.|.
T Consensus 277 ~~~~~~~~~~~~~~~~g~~gev~vT~~rN~Ga~i~ 311 (312)
T COG1907 277 EAGSVVRKLIDILLEEGIGGEVFVTKARNRGAEIL 311 (312)
T ss_pred ccchHHHHHHHHHHhcCCceEEEEeccCCCCceec
Confidence 76777888999998876 4899999999999875
No 50
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.68 E-value=5.7e-15 Score=135.95 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=78.5
Q ss_pred cCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCccccee
Q 045151 128 KPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTV 207 (387)
Q Consensus 128 ~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~ 207 (387)
++++|+++++||.++|||||||.++|++.+++++++.+ +++ +++.++|.. -|.|+++
T Consensus 85 ~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~-----------ls~---~eL~~lA~~---------lGaDvPf 141 (257)
T PRK04181 85 KKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLK-----------LSL---EELAEIGSK---------VGADVAF 141 (257)
T ss_pred CceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCC-----------cCH---HHHHHHHHH---------hCCCccE
Confidence 47899999999999999999999999999999999876 665 444555532 4679999
Q ss_pred Eeec-ceEEEe-CCC-cccccCCCCceEEEEEeCCCCChHHHHHHH
Q 045151 208 STYG-NIIKFR-SGN-MTCIKSNMPLKMLITNTKVGRNTRALVAGV 250 (387)
Q Consensus 208 ~~~G-g~i~~~-~~~-~~~l~~~~~~~~ll~~t~~~~~T~~~~~~~ 250 (387)
|++| +....+ .|+ +++++.++. .++|+.|+...+|+++++.+
T Consensus 142 fl~~~~~a~~~G~Ge~l~~l~~~~~-~~~lv~P~~~vsT~~vy~~~ 186 (257)
T PRK04181 142 FISGYKSANVSGIGEIVEEFEEEIL-NLEIFTPNIFCSTKAVYKAY 186 (257)
T ss_pred EecCCceEEEEeeCCeeEECCCCCC-eEEEECCCCCcCHHHHHHHH
Confidence 9999 754444 565 677753223 48899999999999987653
No 51
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=9.5e-14 Score=133.00 Aligned_cols=232 Identities=20% Similarity=0.212 Sum_probs=159.7
Q ss_pred ccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cc
Q 045151 127 FKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DN 205 (387)
Q Consensus 127 ~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~ 205 (387)
..||+|..+|++|-|+|||.||-++...++|+..+.+..+ + +..-.-.|.+-....|+. ...+.|+ ||
T Consensus 689 ~~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~------g----TeaLiHailHtvlrlEQi-lTTGGGWQDQ 757 (948)
T KOG4644|consen 689 CCGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRAD------G----TEALIHAILHTVLRLEQI-LTTGGGWQDQ 757 (948)
T ss_pred cCceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhcccc------c----hhHhHHHHHHHHHHHHHH-hhcCCchhhh
Confidence 4589999999999999999999999999999998887641 0 111112344444557763 4566788 99
Q ss_pred eeEeecceE----EEe-CCC--cccccCC------CCceEEEEEeCCCCChHHHHHHHHH-HHhhChhHHHHHHHHHHHH
Q 045151 206 TVSTYGNII----KFR-SGN--MTCIKSN------MPLKMLITNTKVGRNTRALVAGVSE-RSMRHPDAMSSVFNAVDSI 271 (387)
Q Consensus 206 ~~~~~Gg~i----~~~-~~~--~~~l~~~------~~~~~ll~~t~~~~~T~~~~~~~~~-~~~~~~~~~~~~~~~i~~i 271 (387)
...++-|+- +++ +.. .+++.+| .+-++++++|+..+-.+.++.++.. ++.+++...+ -..++-+.
T Consensus 758 ~G~im~GIK~gr~rael~~~ie~eeiTipe~f~ekL~dhLLLVYTGKTRLAkNLLQdViRn~far~~a~~Q-~ah~l~~~ 836 (948)
T KOG4644|consen 758 CGAIMEGIKKGRCRAELNHGIEHEEITIPEEFREKLEDHLLLVYTGKTRLAKNLLQDVIRNFFARCKATKQ-KAHKLAEA 836 (948)
T ss_pred ccchhhhhhhccchhhccCCceeeeecCCHHHHHHHhhcEEEEEeCchHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHH
Confidence 888787752 222 112 3444444 2568999999998887777777543 4445654332 34455555
Q ss_pred HHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHhhc--CCcccccCCCCCCeEEEEeC
Q 045151 272 SKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQ--CMGVSHSSIETVLRTTLKF--KLASKLTGAGGGGCALTLLP 347 (387)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~--~~~~s~p~l~~l~~~a~~~--g~gaklsGaG~Gg~v~al~~ 347 (387)
++++.+-+++ +.++.+++++...|...+ .-|..++...++++..... |-.....|||+||++|.+.+
T Consensus 837 tdecAegf~k---------Gsl~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLaph~hgesgw~AGAGGGGFiYLl~k 907 (948)
T KOG4644|consen 837 TDECAEGFEK---------GSLELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAPHKHGESGWAAGAGGGGFIYLLIK 907 (948)
T ss_pred HHHHHHHHhc---------CcHHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhccccccccchhccCCCCcEEEEEec
Confidence 6677777776 778999999987776666 4567778888898877654 44456889999999999998
Q ss_pred CCCCHHHHHHHHHHHHHC-C---ceEEEeeecCCceEEE
Q 045151 348 TLLSATVVEKVTTELETC-G---FQCLIAGIGGTGVEVC 382 (387)
Q Consensus 348 ~~~~~~~~~~i~~~~~~~-g---~~~~~~~~~~~G~~v~ 382 (387)
..... +.+...+.+. | +.++.++++-+|..+.
T Consensus 908 Epqqk---eaiEa~Lak~eg~gN~s~Hlieid~egl~ik 943 (948)
T KOG4644|consen 908 EPQQK---EAIEAFLAKNEGFGNMSCHLIEIDLEGLFIK 943 (948)
T ss_pred CCCCH---HHHHHhhccCCCcCceeEEEEEecCCcchHH
Confidence 75543 3444444332 3 3688888888887543
No 52
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.58 E-value=5.4e-13 Score=125.82 Aligned_cols=194 Identities=13% Similarity=0.134 Sum_probs=118.9
Q ss_pred cCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCccccee
Q 045151 128 KPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTV 207 (387)
Q Consensus 128 ~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~ 207 (387)
.+++|.+++++|.++|||||||..+|++.|++.+++++ +++ .+++++|.++| |. ...
T Consensus 84 ~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~-----------l~~---~eL~~lA~~gs----Gs-----a~~ 140 (305)
T TIGR01240 84 EKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLP-----------LDT---SELSRIARKGS----GS-----ACR 140 (305)
T ss_pred CceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCC-----------CCH---HHHHHHHHHhc----CC-----eee
Confidence 46899999999999999999999999999999999875 544 45677776654 22 334
Q ss_pred EeecceEEEeCCC------cccccCCC---Cc-eEEEEEeCCCC---ChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHH
Q 045151 208 STYGNIIKFRSGN------MTCIKSNM---PL-KMLITNTKVGR---NTRALVAGVSERSMRHPDAMSSVFNAVDSISKE 274 (387)
Q Consensus 208 ~~~Gg~i~~~~~~------~~~l~~~~---~~-~~ll~~t~~~~---~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 274 (387)
|++||++.+..|. ..+++.+. ++ .++++.+..+. ||..+...+. ..| .++...+....-...
T Consensus 141 s~~GG~v~~~~g~~~~~s~a~~i~~~~~~~~~~~~v~vv~~~~k~vsSt~gm~~~~~----ts~-~~~~~v~~~~~~l~~ 215 (305)
T TIGR01240 141 SLFGGYVAWEKGKDDHSSAAVQVADDSDWPQXAMCVLVVNDIKKDVSSRQGMQLTVA----TSE-LFKEWIEHVVPDFEV 215 (305)
T ss_pred eeecCeEEEEcCCCCCCeeEEECCCccccccceEEEEEcCCCCCCCCCHHHHHHhhh----cCc-cHHHHHHHHHHHHHH
Confidence 9999998877531 34454432 33 34455555554 6666533221 112 122233333311334
Q ss_pred HHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhc--C------CCCHHHHHHHHHH---hhcC-CcccccCCCCCCeE
Q 045151 275 LSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCM--G------VSHSSIETVLRTT---LKFK-LASKLTGAGGGGCA 342 (387)
Q Consensus 275 ~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~--~------~s~p~l~~l~~~a---~~~g-~gaklsGaG~Gg~v 342 (387)
+..++.. +|++.|+++...+-..+.+. . ...|.--++++.. ++.| ..+--.=|| +.+
T Consensus 216 ~~~ai~~---------~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~~g~~~~~T~DAG--pNv 284 (305)
T TIGR01240 216 XRKAIKT---------KDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQGGTICYFTMDAG--PNV 284 (305)
T ss_pred HHHHHHh---------ccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHhCCCcEEEEEcCC--CCE
Confidence 5666665 79999999876544344321 1 1234444444444 4446 334444677 899
Q ss_pred EEEeCCCCCHHHHHHHHH
Q 045151 343 LTLLPTLLSATVVEKVTT 360 (387)
Q Consensus 343 ~al~~~~~~~~~~~~i~~ 360 (387)
..|+.++..+++.+.+.+
T Consensus 285 ~vl~~~~~~~~v~~~~~~ 302 (305)
T TIGR01240 285 KVLYLAENLSKLFEFIYK 302 (305)
T ss_pred EEEEccccHHHHHHHHHH
Confidence 999998654444444433
No 53
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.53 E-value=8.5e-15 Score=106.85 Aligned_cols=67 Identities=45% Similarity=0.692 Sum_probs=60.3
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEee
Q 045151 131 TVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTY 210 (387)
Q Consensus 131 ~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~ 210 (387)
+|+++++||.++|||||||++++++.+++++++.+ +++ ++++++++.+|+.+ |.++|.|+++++|
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~-----------~~~---~~l~~~a~~~e~~~-g~~~g~d~~~~~~ 65 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLP-----------LSK---EELAKLAQEAERYI-GKPSGIDDAASAY 65 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTS-----------SBH---HHHHHHHHHHHHHC-SSSHSHHHHHHHH
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHcccc-----------ccH---HHHHHHHHHHHHHc-CCCChhhHHHHHh
Confidence 58999999999999999999999999999999975 544 56789999999777 9999998899999
Q ss_pred cc
Q 045151 211 GN 212 (387)
Q Consensus 211 Gg 212 (387)
||
T Consensus 66 GG 67 (67)
T PF00288_consen 66 GG 67 (67)
T ss_dssp CS
T ss_pred Cc
Confidence 97
No 54
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.48 E-value=7e-12 Score=110.88 Aligned_cols=193 Identities=17% Similarity=0.180 Sum_probs=127.0
Q ss_pred ccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccce
Q 045151 127 FKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNT 206 (387)
Q Consensus 127 ~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~ 206 (387)
..|+++.+.|+||.|.||+||+|+.+|++.|+..++|.. +++ .+|+++|.++|- + |
T Consensus 81 ~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~-----------l~e---s~iakLcv~iEP------t--D-- 136 (293)
T COG4542 81 NTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRE-----------LRE---SEIAKLCVSIEP------T--D-- 136 (293)
T ss_pred cCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCC-----------CCH---HHHHHHHhhcCC------c--c--
Confidence 457899999999999999999999999999999999976 655 467899999883 2 2
Q ss_pred eEeecceEEEeC--CCc-ccccCCCCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCC
Q 045151 207 VSTYGNIIKFRS--GNM-TCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPT 283 (387)
Q Consensus 207 ~~~~Gg~i~~~~--~~~-~~l~~~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~ 283 (387)
..+|-+...|+. +.+ +....+|++.++++..+....|.+. ++ ..+... .-+-...++++.....+++.-
T Consensus 137 siiF~~~tlFd~r~g~~~~~~g~~PpL~ilv~e~~~~v~T~~y----~q-~~r~e~-~~~~~~e~~~l~~~v~~A~~~-- 208 (293)
T COG4542 137 SIIFDKATLFDQREGRVIEFLGEMPPLHILVFEGKGTVETVDY----NQ-PPRGEK-LLAPLAELGNLINLVEKALKV-- 208 (293)
T ss_pred ceecccceeehhccchHHHhcCCCCceEEEEEcCCCceeeeec----cC-Cchhhh-hhhhHHHHHHHHHHHHHHHcc--
Confidence 234455555653 332 3333457899999998887776542 11 000000 001123344444455556654
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 045151 284 PDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTEL 362 (387)
Q Consensus 284 ~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~ 362 (387)
+|...+|++-+.+-..-+ .-..-|.++.+.+.+.+.+ +|.-++-+| +|+++.-+........+++-.+
T Consensus 209 -------~~~~~lG~AAT~SAv~~Q-~~LPK~~~~~lL~l~e~~~~~Gv~VAHSG---tmlGli~D~~~~~d~~k~~~~l 277 (293)
T COG4542 209 -------GDPKLLGEAATLSAVKNQ-DRLPKPGLNELLRLVEETCAIGVIVAHSG---TMLGLIYDRKYALDPRKLRVVL 277 (293)
T ss_pred -------CCHHHHHHHHHHHHHhhc-cccCchhHHHHHHHHHHhcccceEEeccC---ceEEeeeccccccchHHHHHHH
Confidence 778889998775533322 2245788999999998887 887777776 7888876655333333443333
No 55
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=99.41 E-value=1.1e-10 Score=105.10 Aligned_cols=240 Identities=19% Similarity=0.286 Sum_probs=159.3
Q ss_pred CceEEEcCceEEEE-----eccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccC
Q 045151 1 MEVKARAPGKIILA-----GEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHL 75 (387)
Q Consensus 1 ~~~~~~APgkv~L~-----GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~ 75 (387)
|..+.++|+-+.=| |.--...|.....+++++++++.++.. .. +++..++. .+++ +
T Consensus 1 ~~~~~fvP~hITgfF~pv~~~~p~~SGSiGaGv~l~~gv~v~v~~~----~~--~~v~~Ng~----~~d~---~------ 61 (283)
T COG1829 1 MAVRLFVPGHITGFFVPVIGKDPLKSGSIGAGVALERGVTVEVRFG----EG--TGVRLNGK----KIDL---P------ 61 (283)
T ss_pred CCceEeccceeEEEEEeccCCCCccCCCcceeEEecCceeEEEEec----CC--ceEEECCe----eccc---h------
Confidence 55678889887533 332335588899999999999999864 22 23322220 1110 0
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHH
Q 045151 76 GSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLT 155 (387)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~ 155 (387)
..+.+++. ....++.+.+.+++|.|+|+|-|+|.+.+.+
T Consensus 62 -----------------~~~~v~e~------------------------L~~~~~~v~~~~~~P~G~G~G~Sga~AL~~A 100 (283)
T COG1829 62 -----------------ITRKVIEK------------------------LGPDGVGVRIESPVPLGCGYGVSGAGALGTA 100 (283)
T ss_pred -----------------hHHHHHHH------------------------hCccCcceEEEecCCCCcccchhHHHHHHHH
Confidence 11222221 1233467999999999999999999999999
Q ss_pred HHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cceeEeecce-EEEeCCC-----cccccCCC
Q 045151 156 AALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYGNI-IKFRSGN-----MTCIKSNM 228 (387)
Q Consensus 156 ~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~~~~~~Gg~-i~~~~~~-----~~~l~~~~ 228 (387)
.|++..+++. .+..+++||.+|.. +.+|+ |+.+.++||+ ++.++|. ++.+|.++
T Consensus 101 la~a~~~~~~----------------~~~a~~~AH~aEV~---~gtGLGDVvAq~~GGlViR~~pG~Pg~~~vd~Ip~~~ 161 (283)
T COG1829 101 LALAEELGLG----------------EESAARIAHVAEVE---NGTGLGDVVAQYTGGLVIRVKPGGPGEGEVDRIPVPG 161 (283)
T ss_pred HHHHhhcCCC----------------HHHHHHHHHHHHHH---cCCCchHHHHHhcCcEEEEecCCCCCeEEEEEeecCC
Confidence 9999988753 25568899998864 44677 9999999996 4455442 56777754
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHH-HHHHcCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 045151 229 PLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKEL-STIIESPTPDDLSITEKEERLEELMEMNQGLL 307 (387)
Q Consensus 229 ~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l 307 (387)
++++.+..+ +.+|++++.... .+++.+...++ .+.+++ ..+.++|+.+.++-
T Consensus 162 -~~V~~~~~g-~l~T~~vi~~~~-------------~~~i~~~g~~~l~ellk~------------Ptle~f~~~a~~FA 214 (283)
T COG1829 162 -LRVITISLG-ELSTKSVITDEV-------------VRKINEAGKRALAELLKN------------PTLENFMEEAREFA 214 (283)
T ss_pred -ceEEEEEcc-cccHHHhhhhHH-------------HHHHHHHHHHHHHHHHhC------------CCHHHHHHHHHHHH
Confidence 787666666 789988865422 12222222222 233333 23557788888888
Q ss_pred hhcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCC
Q 045151 308 QCMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPT 348 (387)
Q Consensus 308 ~~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~ 348 (387)
+..|.++.++...++...+.| +++.|.= .|-.+|++.+.
T Consensus 215 ~~~Gl~~~~v~~~~~~~~~~g~l~as~~m--lg~tVFa~~~~ 254 (283)
T COG1829 215 RRTGLMSEEVKEAAEALHSVGGLGASMAM--LGVTVFALSPE 254 (283)
T ss_pred HHhCcCHHHHHHHHHHhhhcCchhHhHHh--hCcEEEEeccc
Confidence 889998888888777777666 7666653 34789999844
No 56
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=99.40 E-value=2.3e-13 Score=92.84 Aligned_cols=38 Identities=45% Similarity=0.650 Sum_probs=33.5
Q ss_pred eEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEc
Q 045151 3 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRF 40 (387)
Q Consensus 3 ~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~ 40 (387)
++++||||++|+|||+||+|+.+|++|||+++++.+++
T Consensus 14 ~~~~APGRvnliGeHtDy~gG~Vl~~Ai~~~~~~a~~~ 51 (52)
T PF10509_consen 14 VVASAPGRVNLIGEHTDYNGGFVLPAAIDLRTYVAVSP 51 (52)
T ss_dssp EEEEEEEEEEEE-TT-GGGT-EEEEEEEEEEEEEEEEE
T ss_pred EEEECCceEEecCcccccCCCeEEEEEeeccEEEEEEc
Confidence 58999999999999999999999999999999999976
No 57
>PLN02407 diphosphomevalonate decarboxylase
Probab=99.27 E-value=2.6e-10 Score=107.50 Aligned_cols=183 Identities=20% Similarity=0.207 Sum_probs=107.1
Q ss_pred EEEEEe--cCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccC-cCcHHHHHHHHHhhhhhHhcCCCccccee
Q 045151 131 TVVVTS--DLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYG-ESDLDLLNKWAFEGEKIIHGKPSGLDNTV 207 (387)
Q Consensus 131 ~i~i~s--~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~-~~~l~~i~~~a~~~E~~~~g~~sG~D~~~ 207 (387)
++.|.| ++|.++|||||||..+|++.|+..++++. ++ + .++..+|. +| ||.|.-
T Consensus 105 ~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~-----------~~~~---~~ls~lAr------~G--SGSa~r- 161 (343)
T PLN02407 105 HVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVK-----------EDFP---GELSAIAR------QG--SGSACR- 161 (343)
T ss_pred cEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCC-----------CCch---HHHHHHHh------cc--ChHHHH-
Confidence 566666 99999999999999999999999999975 44 4 33445554 34 777777
Q ss_pred EeecceEEEeCCC--------cccccCC---CCceEEE--EEeCC--CCChHHHHHHHHHHHhhChhHHHHHHHH-HHHH
Q 045151 208 STYGNIIKFRSGN--------MTCIKSN---MPLKMLI--TNTKV--GRNTRALVAGVSERSMRHPDAMSSVFNA-VDSI 271 (387)
Q Consensus 208 ~~~Gg~i~~~~~~--------~~~l~~~---~~~~~ll--~~t~~--~~~T~~~~~~~~~~~~~~~~~~~~~~~~-i~~i 271 (387)
++|||++.+..|. ..+++.. +++++++ ++.+. -.||..|...+ ...| .++..++. ..+-
T Consensus 162 S~~Gg~v~w~~G~~~d~~ds~A~~i~~~~~~~dl~~~i~vv~~~~K~vsSt~GM~~tv----~TSp-~~~~w~~~~~~~~ 236 (343)
T PLN02407 162 SLYGGFVKWNMGKKEDGSDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESV----ETSP-LLQHRAKEVVPKR 236 (343)
T ss_pred HhhCCeEEecCCCCCCCCceeEEECCCccCCccceEEEEEEcCCcCCCCchHHHHHhh----hcCh-hHHHHHHhhhHHH
Confidence 9999999988662 1233211 2355544 33332 23444442221 1111 12222232 2223
Q ss_pred HHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhc--C------CCCHHHHHHHH---HHhhc-C-C-cccccCCC
Q 045151 272 SKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCM--G------VSHSSIETVLR---TTLKF-K-L-ASKLTGAG 337 (387)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~--~------~s~p~l~~l~~---~a~~~-g-~-gaklsGaG 337 (387)
..++.++++. +|+..|+++...+-..+.+. . ...|.--.+++ ..++. | . .+--.-||
T Consensus 237 ~~~~~~Ai~~---------~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~v~yT~DAG 307 (343)
T PLN02407 237 ILQMEEAIKN---------RDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAG 307 (343)
T ss_pred HHHHHHHHHh---------cCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCccEEEEecCC
Confidence 3455666765 79999999986554444421 1 11333333443 44433 4 2 33445677
Q ss_pred CCCeEEEEeCCCCCH
Q 045151 338 GGGCALTLLPTLLSA 352 (387)
Q Consensus 338 ~Gg~v~al~~~~~~~ 352 (387)
+.+..|+.++..+
T Consensus 308 --PNv~vl~~~~~~~ 320 (343)
T PLN02407 308 --PNAVLIALNRKVA 320 (343)
T ss_pred --CCEEEEEChhhhH
Confidence 8999999885433
No 58
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.24 E-value=2.8e-11 Score=92.49 Aligned_cols=73 Identities=26% Similarity=0.290 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHH--HhhcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCC
Q 045151 291 EKEERLEELMEMNQGL--LQCMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCG 366 (387)
Q Consensus 291 ~d~~~l~~~~~~~~~~--l~~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g 366 (387)
+|++.|+++|+.+|.. .......+|+++.+++.+++.| ++++|||||||||+++|+++ ++..+++.+++++++
T Consensus 8 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~---~~~~~~v~~~l~~~~ 83 (85)
T PF08544_consen 8 GDLELLGELMNENQENEPENYREVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKD---EDDAERVAEALREHY 83 (85)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESS---HHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECC---HHHHHHHHHHHHHhC
Confidence 8999999999988773 2255677999999999999999 99999999999999999966 355667777776543
No 59
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=99.23 E-value=3.1e-09 Score=99.46 Aligned_cols=197 Identities=17% Similarity=0.170 Sum_probs=113.8
Q ss_pred cCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCccccee
Q 045151 128 KPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTV 207 (387)
Q Consensus 128 ~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~ 207 (387)
..++|...++.|.++||+||||..+|+++|++.++++. ++..++.+++++ |.+|+ .-
T Consensus 89 ~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~-----------~d~~~lS~~AR~---------gSGSa---~R 145 (329)
T COG3407 89 FKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLD-----------LDDEFLSRIARL---------GSGSA---SR 145 (329)
T ss_pred ceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccC-----------CCHHHHHHHHHH---------hccch---hh
Confidence 45788899999999999999999999999999988876 555555444442 23232 23
Q ss_pred EeecceEEEeCCC--------cccccCCC--CceEEEEEeCCCC-ChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHH
Q 045151 208 STYGNIIKFRSGN--------MTCIKSNM--PLKMLITNTKVGR-NTRALVAGVSERSMRHPDAMSSVFNAVDSISKELS 276 (387)
Q Consensus 208 ~~~Gg~i~~~~~~--------~~~l~~~~--~~~~ll~~t~~~~-~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 276 (387)
+++||++.+..+. ..++.+++ .+-++++.+..+. ++.+...... .....++..++....-.+++.
T Consensus 146 S~~Gg~~~W~~~~g~~~~~~~~~~~~~~~e~~~i~~~~~~~~k~vsS~~gm~~~~----~tS~~y~~w~~~~~~~~~~m~ 221 (329)
T COG3407 146 SIFGGFVLWEKGEGEDSAAEQLFRLDLWKELAMIVLVISPKKKKVSSREGMQLTA----ETSPFYDAWLEHSEEDLEEMK 221 (329)
T ss_pred hhcCCeeEeccCCCCccceeeeccccCccccceEEEEEccccCCCCchHHHHHHH----HcChHHHHHHHHHHHhHHHHH
Confidence 8899997776543 22334433 3344455554433 3333222101 111233444444433334556
Q ss_pred HHHcCCCCCCCcchHHHHHHHHHHHHH----HHHHhhcC----CCCHHHHHHHHHHhhc---C-CcccccCCCCCCeEEE
Q 045151 277 TIIESPTPDDLSITEKEERLEELMEMN----QGLLQCMG----VSHSSIETVLRTTLKF---K-LASKLTGAGGGGCALT 344 (387)
Q Consensus 277 ~~l~~~~~~~~~~~~d~~~l~~~~~~~----~~~l~~~~----~s~p~l~~l~~~a~~~---g-~gaklsGaG~Gg~v~a 344 (387)
.++.. .|++.|+++...+ |..+..-+ .-+++.-++++.+++. | ..+-..=|| +.++.
T Consensus 222 ~~~~~---------~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~g~~~~fT~DaG--PnV~v 290 (329)
T COG3407 222 EAIRE---------KDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKEGNAVYFTMDAG--PNVKV 290 (329)
T ss_pred HHHhc---------cCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHHhcCCceEEEEcCC--CceEE
Confidence 66665 7999999987654 33333111 2244455555555543 4 223334456 89999
Q ss_pred EeCCCCCHHHHHHHHHHHHHCC
Q 045151 345 LLPTLLSATVVEKVTTELETCG 366 (387)
Q Consensus 345 l~~~~~~~~~~~~i~~~~~~~g 366 (387)
++.++.. ..+.+.+...+
T Consensus 291 ~~~~~~l----~~~~~~~~~~~ 308 (329)
T COG3407 291 ITLEENL----IDLLEILKTLE 308 (329)
T ss_pred EEecccH----HHHHHHHhhcc
Confidence 9988543 33444444433
No 60
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=99.18 E-value=3e-10 Score=100.87 Aligned_cols=219 Identities=21% Similarity=0.234 Sum_probs=135.8
Q ss_pred eEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhh-------hHhc----
Q 045151 130 ATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEK-------IIHG---- 198 (387)
Q Consensus 130 ~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~-------~~~g---- 198 (387)
-++++.+.||.++|+|||++..++.+...+...++. |++... ...+..+|+ .+.|
T Consensus 95 Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LG-----------lsk~~m---ldy~lmierhpdn~~a~mmGgf~G 160 (355)
T KOG1537|consen 95 TKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLG-----------LSKGSM---LDYSLMIERHPDNAVAEMMGGFLG 160 (355)
T ss_pred eeeeecCCccccccccchhhhhhhhheecchHhhcC-----------Cccccc---hhHHHHHhhChHHHHHHHHhhHHH
Confidence 468888999999999999999999998888776653 322111 111112221 1111
Q ss_pred -----------CCCcc--cc-eeEeecceEEEeCC---C---cccccCCCCceEEEEEeCCCCChHHHHHHHHHHHhhCh
Q 045151 199 -----------KPSGL--DN-TVSTYGNIIKFRSG---N---MTCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHP 258 (387)
Q Consensus 199 -----------~~sG~--D~-~~~~~Gg~i~~~~~---~---~~~l~~~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~ 258 (387)
+.+|. |+ .....||++...+. + .-++|..++++++++.|....+|+++++- .|
T Consensus 161 Sflr~l~e~E~~~~~~~ad~ilp~~~gg~~li~~lpP~dlg~~~r~pw~~~lk~i~viP~Fel~T~k~R~v-------LP 233 (355)
T KOG1537|consen 161 SFLRALLESEAKVSGYHADNILPAIMGGFVLIRNLPPLDLGKPLRFPWDKDLKFILVIPDFELPTKKMRAV-------LP 233 (355)
T ss_pred HHHHHhCHhhhhhcCCCHHHhcccccCCeeeecCCCcccccccccCCCCccceEEEEeccccccchhhhhh-------cC
Confidence 22443 54 66888887666532 2 23455568899999999999999887432 22
Q ss_pred hHHHHHHHHHHHHHHH--HHHHHcCCCCCCCcchHHHHHHHHHHHH-HHHHHhhcCCCCHHHHHHHHHHhhc---C-Ccc
Q 045151 259 DAMSSVFNAVDSISKE--LSTIIESPTPDDLSITEKEERLEELMEM-NQGLLQCMGVSHSSIETVLRTTLKF---K-LAS 331 (387)
Q Consensus 259 ~~~~~~~~~i~~i~~~--~~~~l~~~~~~~~~~~~d~~~l~~~~~~-~~~~l~~~~~s~p~l~~l~~~a~~~---g-~ga 331 (387)
..+. ..+.+.++.+. +..++-.. . .+......+|.+ -|+..|. --.|.++.++..+... | +|.
T Consensus 234 t~yp-~~d~V~NlqrlA~LttAl~~~-p------~n~~L~y~~m~DkvhqPyRa--~LIPGl~~il~~~~p~t~pGl~Gi 303 (355)
T KOG1537|consen 234 TEYP-MVDHVWNLQRLAALTTALLEG-P------DNVMLGYALMSDKVHQPYRA--PLIPGLEAILKAALPATYPGLFGI 303 (355)
T ss_pred cccc-ceeeeecHHHHHHHHHHHhcC-C------CchhhhhhhhhccccCcccc--ccCccHHHHHHhhCcccCCceeeE
Confidence 2110 01111111111 12233221 1 233444556643 3555552 2278999999988876 8 899
Q ss_pred cccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceE--EEeeecCCceEEE
Q 045151 332 KLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQC--LIAGIGGTGVEVC 382 (387)
Q Consensus 332 klsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~--~~~~~~~~G~~v~ 382 (387)
.+|||| ++++++... +-++..+++.++|.+.|..+ ..+++.-+|+.|+
T Consensus 304 clSGAG--PT~lAlate-nf~eI~~~mv~~F~K~G~kcs~~~l~pa~Dga~v~ 353 (355)
T KOG1537|consen 304 CLSGAG--PTALALATE-NFQEIGEKMVEAFWKVGHKCSVASLKPALDGAGVR 353 (355)
T ss_pred EecCCC--CeeEEEecC-cHHHHHHHHHHHHHhhCceeeeEeeccccCCccee
Confidence 999999 999999884 45778899999999999754 4455444555554
No 61
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=98.65 E-value=8.3e-07 Score=81.31 Aligned_cols=190 Identities=18% Similarity=0.254 Sum_probs=104.6
Q ss_pred CeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeE
Q 045151 129 PATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVS 208 (387)
Q Consensus 129 ~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~ 208 (387)
.++|.-.++.|..+||.||||=-+|++.||+++++++ .+++++. .+|.+ |.+| ..-+
T Consensus 105 ~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~-----------~~~~els---~iAR~------GSGS---ACRS 161 (395)
T KOG2833|consen 105 KLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLD-----------DSPEELS---RIARQ------GSGS---ACRS 161 (395)
T ss_pred eEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCC-----------CCHHHHH---HHHhc------cCch---hhhh
Confidence 3566677889999999999999999999999999986 4554444 44432 3221 1127
Q ss_pred eecceEEEeCCC---------cccccC--CCCceEE-EEEeCCCC---ChHHHHHHHHHHHhhChhHHHHHHHHHHHHH-
Q 045151 209 TYGNIIKFRSGN---------MTCIKS--NMPLKML-ITNTKVGR---NTRALVAGVSERSMRHPDAMSSVFNAVDSIS- 272 (387)
Q Consensus 209 ~~Gg~i~~~~~~---------~~~l~~--~~~~~~l-l~~t~~~~---~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~- 272 (387)
+|||++.++.|+ ++..|. =++++++ ++.++... ||..|...+.- ...+ -.++.+++
T Consensus 162 l~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sveT-----S~L~---qhRi~~vVP 233 (395)
T KOG2833|consen 162 LYGGFVAWEMGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSVET-----SQLL---QHRIESVVP 233 (395)
T ss_pred hhcceeEeecccccCCCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHHHHH-----hHHH---HHHHHhhhH
Confidence 999999986543 222232 1455554 34444333 55555443321 0001 11233322
Q ss_pred ---HHHHHHHcCCCCCCCcchHHHHHHHHHHH-HH---HHHHhhcCCCCH------HHHHHHHHHhhc----C--Ccccc
Q 045151 273 ---KELSTIIESPTPDDLSITEKEERLEELME-MN---QGLLQCMGVSHS------SIETVLRTTLKF----K--LASKL 333 (387)
Q Consensus 273 ---~~~~~~l~~~~~~~~~~~~d~~~l~~~~~-~~---~~~l~~~~~s~p------~l~~l~~~a~~~----g--~gakl 333 (387)
.++.+++.. .||+.|.++.- ++ |.. .+.-.+| .-.+++..+.+. | ..|.-
T Consensus 234 ~Ri~~m~eaI~~---------rDF~~FA~lTm~DSNqFHAv--clDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t~vAYT 302 (395)
T KOG2833|consen 234 QRIQQMREAIRE---------RDFESFAKLTMKDSNQFHAV--CLDTFPPIFYLNDTSWRIISLVHEFNASAGGTRVAYT 302 (395)
T ss_pred HHHHHHHHHHHh---------cCHHHHHHHHHhcchhhhhh--hhccCCCeEEeccchHHHHHHHHHHHhccCCeeEEEE
Confidence 234555554 78999998742 22 222 2222222 223455555543 4 45555
Q ss_pred cCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 045151 334 TGAGGGGCALTLLPTLLSATVVEKVTTEL 362 (387)
Q Consensus 334 sGaG~Gg~v~al~~~~~~~~~~~~i~~~~ 362 (387)
--||.-.|+|++-++ +.++.+.+.+.|
T Consensus 303 FDAGPNAvl~~l~e~--~~~~l~~~~~~f 329 (395)
T KOG2833|consen 303 FDAGPNAVLIVLEEN--VSQLLAAVLKVF 329 (395)
T ss_pred ecCCCceEEEEhhhh--HHHHHHHHHHhc
Confidence 678866666655444 334444444433
No 62
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=42.71 E-value=23 Score=25.06 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 045151 312 VSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELET 364 (387)
Q Consensus 312 ~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~ 364 (387)
++...+..+.++++++| ...++|... +..+--++.+. ++.+.+.+++
T Consensus 21 i~~~~l~~la~ia~~yg~~~irlT~~Q--~l~l~~v~~~~----~~~i~~~L~~ 68 (69)
T PF03460_consen 21 ISAEQLRALAEIAEKYGDGEIRLTTRQ--NLQLRGVPEEN----LPAIFEELKE 68 (69)
T ss_dssp EEHHHHHHHHHHHHHHSTSEEEEETTS--CEEEEEEEGGG----HHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHhCCCeEEECCCC--eEEEeCCCHHH----HHHHHHHHHc
Confidence 34567888899999998 788999766 67776677644 4445555543
No 63
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=21.15 E-value=1.4e+02 Score=28.33 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCc
Q 045151 312 VSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGF 367 (387)
Q Consensus 312 ~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~ 367 (387)
++++.+..++++|.++| ...++|+-+ |..+-..+. +.++.+.+++++.|+
T Consensus 42 l~~e~Lr~i~diAekyG~G~i~iT~rq--g~ei~~i~~----e~~~~v~~~L~~iG~ 92 (317)
T COG2221 42 LSAETLRKIADIAEKYGDGLIHITSRQ--GLEIPGISP----EDADDVVEELREIGL 92 (317)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEecC--ceEeccCCH----HHHHHHHHHHHHcCC
Confidence 45678888999999999 688999887 555544443 456777788877775
No 64
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=20.86 E-value=3.1e+02 Score=23.46 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=30.5
Q ss_pred CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeec-CCceEEE
Q 045151 329 LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIG-GTGVEVC 382 (387)
Q Consensus 329 ~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~-~~G~~v~ 382 (387)
+-+|+-|++ .++......--+..++.+.+.++++|+.+..-.++ +.|-+|.
T Consensus 93 l~aKifGGa---~m~~~~~~~IG~rNv~~a~~~L~~~gI~i~a~DvGG~~gR~i~ 144 (163)
T PRK13494 93 LKAKLFGGT---NFMAKGTIKVGLENSEFAVNTLNKYGIPILAKDFDQSKSRKIF 144 (163)
T ss_pred eEEEEEeCc---ccCCcccCChHHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEE
Confidence 567887543 55541111223567888999999999876665553 3444443
No 65
>COG2090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.83 E-value=2.3e+02 Score=23.41 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=23.0
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEe
Q 045151 339 GGCALTLLPTLLSATVVEKVTTELETCGFQCLIA 372 (387)
Q Consensus 339 Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~ 372 (387)
|+|++++.-+....++.+.+...+++......++
T Consensus 35 GDCIIgi~Adk~~~dlse~fk~~~r~~~~i~vvi 68 (141)
T COG2090 35 GDCIIGISADKALRDLSEEFKAALRRGKRIRVVI 68 (141)
T ss_pred CCEEEEEccCCChhHhhHHHHHHHhCCCeEEEEE
Confidence 3999999888766777777776665544333333
No 66
>PF11582 DUF3240: Protein of unknown function (DUF3240); InterPro: IPR021634 This family of proteins with unknown function appears to be restricted to Proteobacteria. ; PDB: 3CE8_A.
Probab=20.72 E-value=87 Score=24.42 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=24.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecCCce
Q 045151 342 ALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGV 379 (387)
Q Consensus 342 v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~G~ 379 (387)
+-.+++.+..++..+++++.+...+.+.|++.+-..|.
T Consensus 63 ~~~~~~~~~~~~Ll~~L~~~~~~~~i~ywv~Pv~~~G~ 100 (102)
T PF11582_consen 63 FQVILPEEDAEELLAALKQEFAGTGIRYWVTPVIEFGR 100 (102)
T ss_dssp EEEEEEGGGHHHHHHHHHHHTTTS--EEEEEE-S----
T ss_pred EEEEECHHHHHHHHHHHHHHcCCCCcEEEEEhHHhCcc
Confidence 44567777777788888888888888999988877774
No 67
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=20.40 E-value=3.3e+02 Score=23.16 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=30.1
Q ss_pred CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeec-CCceEEE
Q 045151 329 LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIG-GTGVEVC 382 (387)
Q Consensus 329 ~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~-~~G~~v~ 382 (387)
+-+|+-|++ .++.....+--+..++.+.+.|+++|+.+..-.++ +.|-+|.
T Consensus 84 l~aKifGGA---~m~~~~~~~IG~rNi~~a~~~L~~~gI~i~a~dvGG~~gR~i~ 135 (159)
T PRK13495 84 LEAKIAGGA---SMFESSGMNIGARNVEAVKKHLKDFGIKLVAEDTGGNRARSIE 135 (159)
T ss_pred EEEEEEeCC---ccCCCCCCChHHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEE
Confidence 567776533 45432112224567888899999999876665553 3444444
No 68
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=20.32 E-value=2.1e+02 Score=24.29 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHhhcCCcccccCCCC
Q 045151 314 HSSIETVLRTTLKFKLASKLTGAGG 338 (387)
Q Consensus 314 ~p~l~~l~~~a~~~g~gaklsGaG~ 338 (387)
++.+.+..+.+.+.|+..-+.|||+
T Consensus 43 Pe~m~~ya~~a~~~g~~viIAgAGg 67 (162)
T COG0041 43 PEKMFEYAEEAEERGVKVIIAGAGG 67 (162)
T ss_pred HHHHHHHHHHHHHCCCeEEEecCcc
Confidence 4455666667777788889999995
Done!