Query 045151
Match_columns 387
No_of_seqs 209 out of 1821
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 18:13:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kvk_A MK, mevalonate kinase; 100.0 4.8E-52 1.6E-56 407.7 35.2 361 2-383 5-381 (395)
2 3k17_A LIN0012 protein; protei 100.0 8.6E-50 2.9E-54 386.6 30.5 315 2-380 6-357 (365)
3 3k85_A D-glycero-D-manno-hepto 100.0 2.9E-51 1E-55 396.1 14.7 317 1-383 2-340 (357)
4 4hac_A Mevalonate kinase; GHMP 100.0 9.6E-48 3.3E-52 366.6 32.9 300 2-382 21-321 (321)
5 3gon_A Phosphomevalonate kinas 100.0 4.9E-48 1.7E-52 370.7 28.9 300 2-376 1-331 (335)
6 2pg9_A Phosphomevalonate kinas 100.0 2.5E-46 8.5E-51 359.0 29.0 299 1-375 2-332 (337)
7 3v2u_C Protein GAL3; rossmann 100.0 8.2E-46 2.8E-50 369.9 28.4 335 2-382 39-518 (520)
8 1pie_A Galactokinase; galactos 100.0 1.7E-44 5.7E-49 356.6 27.0 319 3-382 49-416 (419)
9 2x7i_A Mevalonate kinase; tran 100.0 1.1E-43 3.9E-48 336.9 25.6 296 3-375 7-307 (308)
10 1kkh_A Mevalonate kinase; mixe 100.0 2.7E-43 9.1E-48 335.7 27.7 307 2-376 5-317 (317)
11 1wuu_A Galactokinase; galactos 100.0 3.7E-43 1.3E-47 345.0 29.3 320 2-382 36-397 (399)
12 2a2c_A N-acetylgalactosamine k 100.0 5.8E-43 2E-47 350.4 29.3 326 2-383 55-476 (478)
13 2hfs_A Mevalonate kinase, puta 100.0 9.9E-43 3.4E-47 333.9 27.8 309 3-380 14-331 (332)
14 2cz9_A Probable galactokinase; 100.0 3.5E-43 1.2E-47 339.3 23.8 315 2-381 1-350 (350)
15 2oi2_A Mevalonate kinase; enzy 100.0 3.5E-40 1.2E-44 310.4 28.5 282 2-372 5-290 (292)
16 1h72_C HK, homoserine kinase; 100.0 7.1E-32 2.4E-36 254.3 20.9 289 1-381 1-295 (296)
17 3pyf_A 4-diphosphocytidyl-2-C- 100.0 6.7E-29 2.3E-33 234.5 26.0 285 2-384 5-302 (306)
18 3hul_A HSK, HK, homoserine kin 100.0 6.1E-28 2.1E-32 227.2 21.2 283 1-385 1-292 (298)
19 3qt5_A Mevalonate diphosphate 100.0 2.2E-26 7.4E-31 219.7 24.7 298 1-382 8-331 (332)
20 1uek_A 4-(cytidine 5'-diphosph 99.9 1.3E-27 4.4E-32 222.8 14.2 260 3-379 2-270 (275)
21 2ww4_A 4-diphosphocytidyl-2C-m 99.9 5E-27 1.7E-31 219.5 18.2 262 1-374 1-272 (283)
22 2v8p_A 4-diphosphocytidyl-2-C- 99.9 6.3E-27 2.2E-31 217.7 17.5 248 2-360 4-260 (271)
23 2gs8_A Mevalonate pyrophosphat 99.9 1.1E-24 3.8E-29 207.0 28.7 285 3-381 9-317 (317)
24 1fi4_A Mevalonate 5-diphosphat 99.9 2.2E-19 7.4E-24 176.3 26.5 199 127-363 121-348 (416)
25 2hke_A Diphosphomevalonate dec 99.8 1.3E-17 4.3E-22 162.0 24.4 195 128-363 96-319 (380)
26 3lto_A Mevalonate diphosphate 99.8 7.3E-18 2.5E-22 158.8 20.1 197 127-362 90-308 (323)
27 3f0n_A Mevalonate pyrophosphat 99.7 2.3E-16 7.8E-21 151.8 16.0 194 128-363 122-345 (414)
28 3lay_A Zinc resistance-associa 37.3 1.7E+02 0.006 24.1 9.0 18 264-281 90-107 (175)
29 3m05_A Uncharacterized protein 24.2 52 0.0018 25.2 2.9 50 314-363 15-70 (114)
30 2cz4_A Hypothetical protein TT 24.2 66 0.0023 24.7 3.6 62 313-374 33-110 (119)
31 1vfj_A Nitrogen regulatory pro 21.9 85 0.0029 23.7 3.8 62 314-375 10-97 (116)
No 1
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=4.8e-52 Score=407.73 Aligned_cols=361 Identities=38% Similarity=0.631 Sum_probs=272.4
Q ss_pred ceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCCC
Q 045151 2 EVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPS 81 (387)
Q Consensus 2 ~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 81 (387)
+++++|||||+|+|||+||||+++|++|||+|+++.++++ +++.+++.+.+.+...+|+++++......... ..
T Consensus 5 ~~~~~APgrv~L~Geh~d~~g~~~l~~ai~~~~~v~v~~~----~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 78 (395)
T 1kvk_A 5 VLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQ----SNGKVSLNLPNVGIKQVWDVATLQLLDTGFLE--QG 78 (395)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEC----SSSEEEEEETTTTEEEEEEHHHHHTSCC--------
T ss_pred cEEEEeCeEEEEecCCeeeECCEeeeeEeeccEEEEEEEC----CCCeEEEEcCCCCceEEEEhHhhhhhhccccc--cc
Confidence 4789999999999999999999999999999999999985 56788998887765567777765321000000 00
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhh-C---ccCeEEEEEecCCCCCCCChhHHHHHHHHHH
Q 045151 82 TPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSII-G---FKPATVVVTSDLPLGAGLGSSAAFCVSLTAA 157 (387)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~---~~~~~i~i~s~iP~g~GLGSSaA~~va~~~A 157 (387)
.+....++....+..+..... ...+-...++..+++.+.... . ..|++|.++++||.++|||||||+++|++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~--~~~y~~~~~~~~~l~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~a 156 (395)
T 1kvk_A 79 DVPAPTLEQLEKLKKVAGLPR--DCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAA 156 (395)
T ss_dssp ----------CHHHHHHTSSC--CCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcccc--ccchhhHHHHHHHHHHHHHHhccccCCCCEEEEEEecCCCCCCccHHHHHHHHHHHH
Confidence 000000000011111110000 000000013344444333221 2 5689999999999999999999999999999
Q ss_pred HHHhcCC-----ccccccCCCccccC-------cCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCCCccccc
Q 045151 158 LLGSLNS-----VHLDKNHQGWLTYG-------ESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIK 225 (387)
Q Consensus 158 l~~~~~~-----~~~~~~~~~~~~l~-------~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~~~~~l~ 225 (387)
++.+++. + ++ +.++.+|+++|+.+|+.++|.+||+|++++++||++.++++.+++++
T Consensus 157 l~~l~~~~~~~~~-----------l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~D~~~~~~Gg~~~~~~~~~~~l~ 225 (395)
T 1kvk_A 157 LLTACEEVTNPLK-----------DRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLK 225 (395)
T ss_dssp HHHHTTSSCCGGG-----------GCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEESSSCEEECS
T ss_pred HHHHhCccccccc-----------ccccccccchhhHHHHHHHHHHhhheEecCCCCcchHHhhhcceEEEcCCCceecc
Confidence 9999997 3 56 56678889999999999999999999999999999888777778887
Q ss_pred CCCCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHH
Q 045151 226 SNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQG 305 (387)
Q Consensus 226 ~~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~ 305 (387)
.++++++++++|+.+++|+++++.+++.....|+.++..+++++++..++.+++... .....++|++.|+++|+++|+
T Consensus 226 ~~~~~~~vl~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~al~~~d~~~lg~lm~~~~~ 303 (395)
T 1kvk_A 226 RLPALQILLTNTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEM--AAAPVPEQYLVLEELMDMNQH 303 (395)
T ss_dssp CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCchHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh--hccccHHHHHHHHHHHHHHHH
Confidence 777899999999999999998887776554455545556777777777776665320 001235899999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHhhcCCcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecCCceEEEe
Q 045151 306 LLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEVCF 383 (387)
Q Consensus 306 ~l~~~~~s~p~l~~l~~~a~~~g~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~G~~v~~ 383 (387)
.++.+++++|+++++++.+++.|.|+||||||||||+++|++++..++.++++.+.|++.|+.+|.++++++|++|..
T Consensus 304 ~l~~~~~~~p~l~~l~~~a~~~Gaga~~sGaG~Gg~v~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~G~~v~~ 381 (395)
T 1kvk_A 304 HLNALGVGHASLDQLCQVTAAHGLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGCGFDCWETSIGAPGVSMHS 381 (395)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHTTCEEEECSSCSSSEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEESCCCSEEEC
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCCceeeccCCCCCEEEEEecCCCCHHHHHHHHHHHHHcCCEEEEEecCCCcEEEEe
Confidence 999889999999999999999887999999999999999999877778888999999999999999999999999874
No 2
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=100.00 E-value=8.6e-50 Score=386.57 Aligned_cols=315 Identities=23% Similarity=0.329 Sum_probs=255.9
Q ss_pred ceEEEcCceEEEEeccceee-CCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCC
Q 045151 2 EVKARAPGKIILAGEHAVVH-GSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFP 80 (387)
Q Consensus 2 ~~~~~APgkv~L~GEh~~~~-g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (387)
+++++|||||+|+|||+||+ |+++|++||++++++.++++ ++. +|.+.+++..++|+++.. ++
T Consensus 6 ~i~~~APGrv~L~GEh~~~~~g~~~l~~Ai~~~~~v~v~~~----~~~--~i~s~~~~~~~~~~~~~~---~~------- 69 (365)
T 3k17_A 6 KLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDS----ERN--ELWIPHYENPVSWPIGGE---LK------- 69 (365)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEEC----SSC--EEECTTCSSCBCCCTTSC---CC-------
T ss_pred EEEEEecceEEEecccEEecCCCEEEEEEccCcEEEEEEEC----CCc--EEEecCCCcceeeecccC---CC-------
Confidence 57899999999999999995 99999999999999999885 333 677777654445543211 00
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCC----CCCCChhHHHHHHHHH
Q 045151 81 STPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPL----GAGLGSSAAFCVSLTA 156 (387)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~----g~GLGSSaA~~va~~~ 156 (387)
.....| +|++++++.+. .++. .......|++|.++++||. ++|||||||+++|++.
T Consensus 70 ----~~~~~~-~yv~~~i~~~~-------------~~~~--~~g~~~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~ 129 (365)
T 3k17_A 70 ----PDGEHW-TFTAEAINIAT-------------TFLK--SEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVIN 129 (365)
T ss_dssp ----CSCGGG-HHHHHHHHHHH-------------HHHH--HTTCCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHH
T ss_pred ----CCCChH-HHHHHHHHHHH-------------HHHH--hcCCCCCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHH
Confidence 012456 88887765321 1110 1123457899999999996 6799999999999999
Q ss_pred HHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCC-----------------
Q 045151 157 ALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSG----------------- 219 (387)
Q Consensus 157 Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~----------------- 219 (387)
|++.+++.+ +++ ++|+++|+.+|+.++|.++|+|+++|++||++.+++.
T Consensus 130 al~~~~~~~-----------l~~---~~l~~~a~~~E~~~~g~~~g~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~l~~l 195 (365)
T 3k17_A 130 ALMTKFYPE-----------ISM---LKKFKLAALSHLVVQGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWF 195 (365)
T ss_dssp HHHHHHCTT-----------SCH---HHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEEECCCHHHHHHHHTTSCHHHH
T ss_pred HHHHHhCCC-----------CCH---HHHHHHHHHHHHHhCCCCCcccHHHHhcCCEEEEecCCHHHhhhhcccchhhhh
Confidence 999999975 554 6779999999999999888889999999999877632
Q ss_pred --------CcccccCCCCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchH
Q 045151 220 --------NMTCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITE 291 (387)
Q Consensus 220 --------~~~~l~~~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~ 291 (387)
.+++++.+++ ++++++|+.+++|+++++.+.+++...|+.+..+++++.+++.++.++|.. +
T Consensus 196 ~~~~w~~~~~~~l~~~~~-~lll~~t~~~~sT~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~---------g 265 (365)
T 3k17_A 196 MKEPWPMLQIETLEEPVP-TFSVGWTGTPVSTGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHT---------K 265 (365)
T ss_dssp HHSCCTTCEEEEECCCSS-EEEEEECSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH---------T
T ss_pred hccCCCCcceeeccCCcc-cEEEEECCCccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh---------C
Confidence 2446676677 999999999999999999888777666665667778888888888888876 7
Q ss_pred HHHHHHHHHHHHHHHHhhcCC------CCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 045151 292 KEERLEELMEMNQGLLQCMGV------SHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELET 364 (387)
Q Consensus 292 d~~~l~~~~~~~~~~l~~~~~------s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~ 364 (387)
|++.|+++|+++|..|+.+++ ++|+++++++.+++.| + +||||||||||+++|+++ ++.++++.++|++
T Consensus 266 d~~~lg~lm~~~~~~l~~l~v~~~~~is~p~ld~l~~~a~~~Ga~-ak~sGAGgGg~vial~~~---~~~~~~l~~~l~~ 341 (365)
T 3k17_A 266 DEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAENMGGA-GKSSGSGGGDCGIAFSKT---KELAEKLVNEWEK 341 (365)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHTTSE-EEECTTCSSSEEEEEESS---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcCCcccCHHHHHHHHHHHhcCCE-EEecCCCCCCEEEEEECC---HHHHHHHHHHHHH
Confidence 899999999999999997765 9999999999999998 7 999999999999999998 4567889999999
Q ss_pred CCceEEEeeecCCceE
Q 045151 365 CGFQCLIAGIGGTGVE 380 (387)
Q Consensus 365 ~g~~~~~~~~~~~G~~ 380 (387)
.|+.++.+.++..|..
T Consensus 342 ~g~~~~~~~~~~~~~~ 357 (365)
T 3k17_A 342 LGIKHLPFHTGRVQIT 357 (365)
T ss_dssp TTCEECCCCBCCCEEE
T ss_pred CCCEEEEEEecccccc
Confidence 9999999888876653
No 3
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.9e-51 Score=396.10 Aligned_cols=317 Identities=18% Similarity=0.206 Sum_probs=230.0
Q ss_pred CceEEEcCceEEEEecccee------eCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhcc
Q 045151 1 MEVKARAPGKIILAGEHAVV------HGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSH 74 (387)
Q Consensus 1 ~~~~~~APgkv~L~GEh~~~------~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~ 74 (387)
|+++++|||||+|+|||+|| +|+++|++|||++++++++++ +++.++|.+.+++....+++++. +
T Consensus 2 Mmi~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId~~~~v~i~~~----~d~~i~i~s~~~~~~~~~~~~~~---~-- 72 (357)
T 3k85_A 2 SLVRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEET----NSGRIEINAYDAQCCKSYLSMSQ---L-- 72 (357)
T ss_dssp -CEEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEEC----SSSEEEEEETTTTEEEEEECCSS---C--
T ss_pred cEEEEECceEEEEecCCccCcchhhcCCCEEEEEEEeCcEEEEEEEC----CCCeEEEEECCCCceEEEecccc---c--
Confidence 67899999999999999999 899999999999999999985 66789999888765444544221 0
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhh-CccCeEEEEEecCCCCCCCChhHHHHHH
Q 045151 75 LGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSII-GFKPATVVVTSDLPLGAGLGSSAAFCVS 153 (387)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~i~i~s~iP~g~GLGSSaA~~va 153 (387)
....|.+|++++++.+. . ... ...|++|.++++||.++|||||||++||
T Consensus 73 -----------~~~~~~~~v~~~~~~l~----------------~---~~~~~~~g~~i~i~~~iP~g~GLgSSaa~~va 122 (357)
T 3k85_A 73 -----------EIDGEASLIKGVYNRII----------------R---DYRLEPKSFKITTYNDAPAGSGLGTSSTMVVC 122 (357)
T ss_dssp -----------CCCSSSHHHHHHHHHHH----------------H---HTTCCCCCEEEEEEESSCSSSSSCHHHHHHHH
T ss_pred -----------cccchHHHHHHHHHHHH----------------H---hcCCCCCCEEEEEecCCCCCCCchHHHHHHHH
Confidence 11357889987776432 0 111 2568999999999999999999999999
Q ss_pred HHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cceeEeecceEE--EeCCC---cccccCC
Q 045151 154 LTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYGNIIK--FRSGN---MTCIKSN 227 (387)
Q Consensus 154 ~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~~~~~~Gg~i~--~~~~~---~~~l~~~ 227 (387)
++.|++.+++.+ +++ ++++++|+.+|+.++|.+||. ||+++++||++. +.+.. +++++++
T Consensus 123 ~~~al~~~~~~~-----------l~~---~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~~~~~~~~~~l~~~ 188 (357)
T 3k85_A 123 ILKAFIEWLSLP-----------LGD---YETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFLQNDLVIVNPLKMK 188 (357)
T ss_dssp HHHHHHHHHTCC-----------CCH---HHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEETTTEEEEEEECCC
T ss_pred HHHHHHHHhCCC-----------CCH---HHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEeCCCceeEEEEecC
Confidence 999999999975 554 667999999999999999997 999999999754 33322 5667665
Q ss_pred CC------ceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHH
Q 045151 228 MP------LKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELME 301 (387)
Q Consensus 228 ~~------~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 301 (387)
+. +.++|++|+.+++|++++.++.......+..+.+.+..+.+.+.++.++|+. +|++.|+++|+
T Consensus 189 ~~~~~~l~~~lvi~~t~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~aL~~---------~d~~~lg~lm~ 259 (357)
T 3k85_A 189 RWIVDELESSMVLYFTGRSRSSAAIINEQKKNTSEGNQTAIEAMHKIKQSAIDTKLALLK---------GDVGEFARILG 259 (357)
T ss_dssp HHHHHHHHHTEEEECC---------------------CCTTHHHHHHHHHHHHHHHHHTT---------TCHHHHHHHHH
T ss_pred hhhhhhcCceEEEEECCCcccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHH
Confidence 43 6899999999999998887764433222221222355555666777888876 78999999999
Q ss_pred HHHHHHhh--cCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecCCc
Q 045151 302 MNQGLLQC--MGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTG 378 (387)
Q Consensus 302 ~~~~~l~~--~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~G 378 (387)
++|..++. +++++|+++++++.+++.| +|+||||||+|||+++|+++ +..+++.+++++.|+.++.++++++|
T Consensus 260 ~~~~~l~~~~~~vs~p~ld~l~~~a~~~Ga~GaklsGaG~gG~vial~~~----~~~~~~~~~l~~~g~~~~~~~~~~~G 335 (357)
T 3k85_A 260 EGWENKKKMAGAITNPMIQEAFDVATGAGAMAGKVSGAGGGGFIMFVVEP----TRKEEVVRALNNLNGFVMPFQFIDDG 335 (357)
T ss_dssp HHHHHTTC-----------CCSCTTTTSCCSEEEECCCC---CEEEECCH----HHHHHHHHHHHTSSSCBCCCCBCCCC
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhcCCeEeEecccCCCCEEEEEecH----HHHHHHHHHHHHCCCeEEEeEEcCCc
Confidence 99999983 7899999999999999999 99999999999999999986 35678888999999999999999999
Q ss_pred eEEEe
Q 045151 379 VEVCF 383 (387)
Q Consensus 379 ~~v~~ 383 (387)
++|+.
T Consensus 336 ~~v~~ 340 (357)
T 3k85_A 336 AHGWK 340 (357)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 99974
No 4
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=100.00 E-value=9.6e-48 Score=366.58 Aligned_cols=300 Identities=28% Similarity=0.393 Sum_probs=247.1
Q ss_pred ceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCCC
Q 045151 2 EVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPS 81 (387)
Q Consensus 2 ~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 81 (387)
|++++|||||+|+|||++|+|+++|++|||+++++++++. + . ++|.+.+.. ..++.
T Consensus 21 mi~~~APgkinL~GeH~~~~Gg~~l~~aI~~~~~v~v~~~----~-~-i~i~~~~~~--~~~~~---------------- 76 (321)
T 4hac_A 21 MVSCSAPGKIYLFGEHAVVYGETAIACAVELRTRVRAELN----D-S-ITIQSQIGR--TGLDF---------------- 76 (321)
T ss_dssp CEEEEEEEEEEEECTTTGGGTCCEEEEEEEEEEEEEEEEC----S-S-EEEEETTEE--ESSCT----------------
T ss_pred EEEEEeeEEEEEEccCEEEcCCEEEEEEeccCEEEEEEEC----C-C-EEEEECCCC--ccccc----------------
Confidence 4789999999999999999999999999999999999863 2 3 777765430 00110
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHh
Q 045151 82 TPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGS 161 (387)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~ 161 (387)
....|.+++..+++.+ ...+|++|.++++||.++|||||||+++|++.|++.+
T Consensus 77 ----~~~~~~~~~~~~l~~~-----------------------~~~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l 129 (321)
T 4hac_A 77 ----EKHPYVSAVIEKMRKS-----------------------IPINGVFLTVDSDIPVGSGLGSSAAVTIASIGALNEL 129 (321)
T ss_dssp ----TTSHHHHHHHHHHTTT-----------------------SCCCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred ----chhHHHHHHHHHHHHh-----------------------CCCCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 0124666665554432 1346899999999999999999999999999999999
Q ss_pred cCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCCCcccccCCCCceEEEEEeCCCC
Q 045151 162 LNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVGR 241 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~~~~~l~~~~~~~~ll~~t~~~~ 241 (387)
++.+ +++ ++++++|..+|+.++|.+++.|++++++||++.+ ++.+++++| ++++++++|+.++
T Consensus 130 ~~~~-----------l~~---~~l~~la~~~e~~~~g~~~~~D~~~~~~Gg~~~~--~~~~~l~~p-~~~~vlv~p~~~~ 192 (321)
T 4hac_A 130 FGFG-----------LSL---QEIAKLGHEIEIKVQGAASPTDTYVSTFGGVVTI--PERRKLKTP-DCGIVIGDTGVFS 192 (321)
T ss_dssp HTCC-----------CCH---HHHHHHHHHHHHHHHSCCCSHHHHHHHHCSEEEE--TTCCEECCC-CCEEEEEECCCCC
T ss_pred hcCC-----------CCH---HHHHHHHHHHHHHhcCCCcHHHHHHHHcCCeEEE--cCCceeccC-CCEEEEEECCCCc
Confidence 9975 554 6678999999999999977779999999998877 333445544 8999999999999
Q ss_pred ChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 045151 242 NTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIETVL 321 (387)
Q Consensus 242 ~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~p~l~~l~ 321 (387)
+|.++++.++..++..|+..++.++++.+++.++..+|.. +|++.|+++|+.+|.+++.+++++|++++++
T Consensus 193 sT~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~---------~d~~~lg~~~~~~~~~~~~~~v~~p~l~~l~ 263 (321)
T 4hac_A 193 STKELVANVRQLRESYPDLIEPLMTSIGKISRIGEQLVLS---------GDYASIGRLMNVNQGLLDALGVNILELSQLI 263 (321)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 9999888776666555654556677788888778888875 7899999999999988888999999999999
Q ss_pred HHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecCCceEEE
Q 045151 322 RTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEVC 382 (387)
Q Consensus 322 ~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~G~~v~ 382 (387)
+.+++.| +|+||||||+|||+++|+++ +.++++.++|++.|+.++.++++++|++|+
T Consensus 264 ~~a~~~Ga~ga~~SGaG~GG~v~al~~~----~~a~~~~~~l~~~g~~v~~~~~~~~G~~v~ 321 (321)
T 4hac_A 264 YSARAAGAFGAKITGAGGGGCMVALTAP----EKCNQVAEAVAGAGGKVTITKPTEQGLKVD 321 (321)
T ss_dssp HHHHHTTCSEEEECSSCSSSEEEEEECS----TTHHHHHHHHHHTTCEEEEECBCSCSSEEC
T ss_pred HHHHHCCCCEEEECccCCCCEEEEEcCH----HHHHHHHHHHHhCCCeEEEEEECCCceecC
Confidence 9999999 99999999999999999944 246778889999999999999999999985
No 5
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=100.00 E-value=4.9e-48 Score=370.72 Aligned_cols=300 Identities=20% Similarity=0.281 Sum_probs=236.4
Q ss_pred ceEEEcCceEEEEeccceee-CCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCC
Q 045151 2 EVKARAPGKIILAGEHAVVH-GSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFP 80 (387)
Q Consensus 2 ~~~~~APgkv~L~GEh~~~~-g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (387)
|+.++|||||+|+|||+|+| |++||++|||+|+++.++++ ++. +|.+..++...++..+
T Consensus 1 mi~v~apGKviL~GEhaVv~~G~~Ala~ai~~~~~v~i~~~----~~~--~i~~~~~~~~~~~~~~-------------- 60 (335)
T 3gon_A 1 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFS----DSY--RIYSDMFDFAVDLRPN-------------- 60 (335)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEEC----SSC--EEEETTSSSCBCSSCC--------------
T ss_pred CEEEEECCEEEEEeeeeEEcCCCcEEEEEecceEEEEEEEC----CCC--EEEEeCCCcccccCcC--------------
Confidence 58999999999999999999 99999999999999999875 333 5555554432221100
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCC---CCCChhHHHHHHHHHH
Q 045151 81 STPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLG---AGLGSSAAFCVSLTAA 157 (387)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g---~GLGSSaA~~va~~~A 157 (387)
+ ....|..+++.+.+ ++ .......+++++.|+|++|.+ +|||||||++||++.|
T Consensus 61 --~--~~~~~~~~i~~~~~-----------------~l--~~~~~~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~a 117 (335)
T 3gon_A 61 --P--DYSLIQETIALMGD-----------------FL--AVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKA 117 (335)
T ss_dssp --T--TTHHHHHHHHHHHH-----------------HH--HHTTCCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHH
T ss_pred --C--CcHHHHHHHHHHHH-----------------HH--HHcCCCCCceEEEEEecCCcccCCCCcchHHHHHHHHHHh
Confidence 0 11233444442222 11 112245679999999999977 6999999999999999
Q ss_pred HHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCCC-----------------
Q 045151 158 LLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGN----------------- 220 (387)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~~----------------- 220 (387)
++.+++.+ +++ .+++++|+.+|+.++|.+||+||+++.+||++.|+..+
T Consensus 118 l~~~~~~~-----------~~~---~~l~~la~~~E~~~~g~~sg~D~a~a~~Gg~i~~~~~~~~~~~~~~~~~~~~~~~ 183 (335)
T 3gon_A 118 LLALYNLS-----------VDQ---NLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVL 183 (335)
T ss_dssp HHHHTTCC-----------CCH---HHHHHHHHHHHHHTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHH
T ss_pred hhhccccc-----------chH---HHHHHHHHHHHHHhcCCCCCCCcceeecCCeEEEEeCCccccceeecccchhhee
Confidence 99999976 544 67899999999999999999999999999998887543
Q ss_pred -------cccccCCCCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHH
Q 045151 221 -------MTCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKE 293 (387)
Q Consensus 221 -------~~~l~~~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~ 293 (387)
.++++.+.++++++++++.+++|.++++.+.+++. +..+..+.+++.++.++|+. +|+
T Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~t~~~v~~v~~~~~------~~~~~~~~~~~~~~~~aL~~---------~d~ 248 (335)
T 3gon_A 184 ERDWGFSISQVKPTLECDFLVGWTKEVAVSSHMVQQIKQNIN------QNFLTSSKETVVSLVEALEQ---------GKS 248 (335)
T ss_dssp HSCCCCEEEECCCCSCCEEEEEECCCCCCHHHHHHHHGGGCC------HHHHHHHHHHHHHHHHHHHH---------TCH
T ss_pred cccccceeEEcCCccccceEEeecCChhhHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHh---------CcH
Confidence 12344456789999999999999999887754332 23466777788888888886 789
Q ss_pred HHHHHHHHHHHHHHhhc--CCCCHHHHHHHHHHhhcCCcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceE-E
Q 045151 294 ERLEELMEMNQGLLQCM--GVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQC-L 370 (387)
Q Consensus 294 ~~l~~~~~~~~~~l~~~--~~s~p~l~~l~~~a~~~g~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~-~ 370 (387)
+.|+++|+++|.+|+.+ ++++|+++.+++.+++.|.++||||||||||+++|+++ ++..+++.++|+++|+.+ |
T Consensus 249 ~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~~g~~akltGAG~Ggc~ial~~~---~~~~~~i~~~~~~~Gi~~~y 325 (335)
T 3gon_A 249 EKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFD---AQSTKTLKNRWADLGIELLY 325 (335)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSEEEEECTTCSSSEEEEEECS---HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHhCCcEEEEccccchheEEEEECC---HHHHHHHHHHHHHCCCcEEe
Confidence 99999999999999954 57899999999999999888999999999999999987 567889999999999875 5
Q ss_pred EeeecC
Q 045151 371 IAGIGG 376 (387)
Q Consensus 371 ~~~~~~ 376 (387)
..+++.
T Consensus 326 ~~~~g~ 331 (335)
T 3gon_A 326 QERIGH 331 (335)
T ss_dssp EEEC--
T ss_pred ehhhcC
Confidence 666543
No 6
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=100.00 E-value=2.5e-46 Score=359.02 Aligned_cols=299 Identities=20% Similarity=0.293 Sum_probs=235.0
Q ss_pred CceEEEcCceEEEEeccceee-CCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCC
Q 045151 1 MEVKARAPGKIILAGEHAVVH-GSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPF 79 (387)
Q Consensus 1 ~~~~~~APgkv~L~GEh~~~~-g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 79 (387)
|+++++|||||+|+|||+++| |+++|++||++++++.++++ + .++|.+.+++...++
T Consensus 2 mmi~~~aPgkv~L~GeH~v~y~G~~~l~~Ai~~~~~v~v~~~----~--~~~i~s~~~~~~~~~---------------- 59 (337)
T 2pg9_A 2 MMIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFS----D--SYRIYSDMFDFAVDL---------------- 59 (337)
T ss_dssp -CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEEC----S--SCEEEETTSSSCBCS----------------
T ss_pred ceEEEeeCceEEEeccceEecCCCEEEEEEccccEEEEEEeC----C--cEEEecCCCCceeee----------------
Confidence 789999999999999999666 99999999999999999874 2 377877665432111
Q ss_pred CCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCC---CCCChhHHHHHHHHH
Q 045151 80 PSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLG---AGLGSSAAFCVSLTA 156 (387)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g---~GLGSSaA~~va~~~ 156 (387)
.| ..+| +|+++++..+. .++ ...+....|++|+++|+||.+ +|||||||+++|++.
T Consensus 60 --~~---~~~~-~~v~~~i~~~~-------------~~~--~~~g~~~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~ 118 (337)
T 2pg9_A 60 --RP---NPDY-SLIQETIALMG-------------DFL--AVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVK 118 (337)
T ss_dssp --SC---CTTT-HHHHHHHHHHH-------------HHH--HHTTCCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHH
T ss_pred --cC---CCCc-HHHHHHHHHHH-------------HHH--HhcCCCCCCEEEEEEccCCCCCCCccccHHHHHHHHHHH
Confidence 01 1235 57766554321 111 001234678999999999999 999999999999999
Q ss_pred HHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeC-C----------------
Q 045151 157 ALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRS-G---------------- 219 (387)
Q Consensus 157 Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~-~---------------- 219 (387)
|++.+++++ +++ ++++++|+.+|...++.++|.|+++|++||++.+.. +
T Consensus 119 al~~~~~~~-----------l~~---~~l~~la~~~E~~~~~~~~~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~ 184 (337)
T 2pg9_A 119 ALLALYNLS-----------VDQ---NLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATV 184 (337)
T ss_dssp HHHHHTTCC-----------CCH---HHHHHHHHHHHHHTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHH
T ss_pred HHHHHhCCC-----------CCH---HHHHHHHHHHHHHhCCCCCHHHHHHHHhCCEEEEecCChHHhhhhhcccchhhh
Confidence 999999976 554 667899999997655666667999999999877652 1
Q ss_pred -------CcccccCCCCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHH
Q 045151 220 -------NMTCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEK 292 (387)
Q Consensus 220 -------~~~~l~~~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d 292 (387)
.+++++.++++++++++|+.+++|+++++.+.+.+ + ++.++++++++.++.++|.. +|
T Consensus 185 l~~~~~~~~~~l~~~~~~~lvl~~~~~~~~T~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~aL~~---------~d 249 (337)
T 2pg9_A 185 LERDWGFSISQVKPTLECDFLVGWTKEVAVSSHMVQQIKQNI---N---QNFLTSSKETVVSLVEALEQ---------GK 249 (337)
T ss_dssp HHSCCCCEEEECCCCSCCEEEEEECCCCCCHHHHHHHHGGGC---C---HHHHHHHHHHHHHHHHHHHH---------TC
T ss_pred cccccccceeeecCCCCceEEEEECCCccchHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHc---------CC
Confidence 24556666789999999999999999887765432 2 23456677777778888876 78
Q ss_pred HHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCce-
Q 045151 293 EERLEELMEMNQGLLQCMG--VSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQ- 368 (387)
Q Consensus 293 ~~~l~~~~~~~~~~l~~~~--~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~- 368 (387)
++.|+++|+.+|..++.++ +++|+++++++.+++.| + +||||||||||+++|+++ ++.++++.++|++.|+.
T Consensus 250 ~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~~Ga~-ak~sGaGgGg~vial~~~---~~~~~~~~~~l~~~g~~~ 325 (337)
T 2pg9_A 250 SEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAV-AKSSGAGGGDCGIALSFD---AQSTKTLKNRWADLGIEL 325 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSEE-EEECTTCSSSEEEEEECS---HHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHCCCE-EEEeCCCCccEEEEEECC---HHHHHHHHHHHHHCCCEE
Confidence 9999999999999999776 89999999999999999 8 999999999999999987 45678899999999985
Q ss_pred EEEeeec
Q 045151 369 CLIAGIG 375 (387)
Q Consensus 369 ~~~~~~~ 375 (387)
.|+.++.
T Consensus 326 ~~~~~~~ 332 (337)
T 2pg9_A 326 LYQERIG 332 (337)
T ss_dssp EEEEEC-
T ss_pred EEEeecc
Confidence 5666664
No 7
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=8.2e-46 Score=369.88 Aligned_cols=335 Identities=20% Similarity=0.256 Sum_probs=236.3
Q ss_pred ceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCc-eeeeeh--hhHHhhhccCCCC
Q 045151 2 EVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMEL-NFSWSV--TRIKATLSHLGSP 78 (387)
Q Consensus 2 ~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~-~~~~~l--~~~~~~~~~~~~~ 78 (387)
.++++|||||+|+|||+||+|++||++|||++++++++++ .++++.|+|.+.+... ..+|++ ++....+
T Consensus 39 ~~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~~--~~~d~~i~i~S~~~~~~~~~~~l~~~~~~~~i------ 110 (520)
T 3v2u_C 39 DFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKIL--DEKNPSITLTNADPKFAQRKFDLPLDGSYMAI------ 110 (520)
T ss_dssp SEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEEC--CCSSCEEEEEESSTTSCCEEEECCTTCCCCCC------
T ss_pred CEEEEcceeEEEeccCeeeCCCEEEEEEeecceEEEEEec--cCCCCEEEEEECCCCCCceEEEeccCcccccc------
Confidence 3679999999999999999999999999999999999874 1256789999877532 234443 2100000
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHH----hhhCccCeEEEEEecCCCCCCCChhHHHHHHH
Q 045151 79 FPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYT----SIIGFKPATVVVTSDLPLGAGLGSSAAFCVSL 154 (387)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~ 154 (387)
.| ....|.+|+++++.. +..++.... ......|+++.|+|+||.|+|| |||++||+
T Consensus 111 ---~~--~~~~W~~Yv~g~i~~-------------v~~~l~~~~~~~~~g~~~~G~~i~i~s~vP~gsGL--SAA~~va~ 170 (520)
T 3v2u_C 111 ---DP--SVSEWSNYFKCGLHV-------------AHSYLKKIAPERFNNTPLVGAQIFCQSDIPTGGGL--SSAFTCAA 170 (520)
T ss_dssp ---CT--TSCCHHHHHHHHHHH-------------HHHHHHHHCHHHHSSSCCCCEEEEEEECCCTTSSH--HHHHHHHH
T ss_pred ---Cc--ccccHHHHHHHHHHH-------------HHHHHHhhcccccccCCCCceEEEEecCCCCCCCH--HHHHHHHH
Confidence 01 234799999976542 112221100 0124579999999999999999 99999999
Q ss_pred HHHHHHhc---CCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cceeEeecc---e--EEEeC-CCcccc
Q 045151 155 TAALLGSL---NSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYGN---I--IKFRS-GNMTCI 224 (387)
Q Consensus 155 ~~Al~~~~---~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~~~~~~Gg---~--i~~~~-~~~~~l 224 (387)
+.|++.++ +.. ++ ..+++++|+.+|+ +.|.+||+ ||+++++|+ + ++|.+ .+++++
T Consensus 171 ~~Al~~~~~g~~~~-----------l~---~~~la~la~~aE~-~vG~~~G~mDQ~as~~G~~g~~l~id~~~~l~~~~v 235 (520)
T 3v2u_C 171 ALATIRANMGKNFD-----------IS---KKDLTRITAVAEH-YVGVNNGGMDQATSVYGEEDHALYVEFRPKLKATPF 235 (520)
T ss_dssp HHHHHHHHHCTTCC-----------CB---HHHHHHHHTTGGG-GGTCCCCSHHHHHHHHCBTTBEEEEECSSSCEEEEE
T ss_pred HHHHHHHhhccCCC-----------CC---HHHHHHHHHHHHH-HhCCCCchhhHHHHHhCCCCeEEEEEcCCCceeEEe
Confidence 99999988 433 43 3678999999998 89999997 999999997 4 55666 567788
Q ss_pred cCCC----CceEEEEEeCCCCChHHHH-HHHHHHHhhChhHHHH------------------------------------
Q 045151 225 KSNM----PLKMLITNTKVGRNTRALV-AGVSERSMRHPDAMSS------------------------------------ 263 (387)
Q Consensus 225 ~~~~----~~~~ll~~t~~~~~T~~~~-~~~~~~~~~~~~~~~~------------------------------------ 263 (387)
|+|+ ++.|+|++|++.++..+.. ..++.|+.+|..+.+.
T Consensus 236 ~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~sLRdv~~~~~~~~~~ 315 (520)
T 3v2u_C 236 KFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYEN 315 (520)
T ss_dssp CCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCCHHHHHHHHHHHHCT
T ss_pred eCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCcccccccccccccccHHHHhHhhhhhccc
Confidence 8876 7999999999954332221 1233333222221111
Q ss_pred ------------------------------------------------------------------HHHHHHHHHHHH--
Q 045151 264 ------------------------------------------------------------------VFNAVDSISKEL-- 275 (387)
Q Consensus 264 ------------------------------------------------------------------~~~~i~~i~~~~-- 275 (387)
+.++.+++..+.
T Consensus 316 ~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~~~~~~~l~~RA~HVv~E~~R 395 (520)
T 3v2u_C 316 QAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPVRFQVLKLYQRAKHVYSESLR 395 (520)
T ss_dssp TSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCEEESCBCHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhccccccccccHHHHHHHHHHHHHHHH
Confidence 111222222222
Q ss_pred ----HHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEe---
Q 045151 276 ----STIIESPTPDDLSITEKEERLEELMEMNQGLLQ-CMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLL--- 346 (387)
Q Consensus 276 ----~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~-~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~--- 346 (387)
.++|+... .....+|++.||++|+++|.+|+ .+++|+|++|.+++++++.| +|+||||||||||+++|+
T Consensus 396 v~~~~~al~~~~--~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~~Ga~GarlTGaG~GGc~iaLv~~~ 473 (520)
T 3v2u_C 396 VLKALKMMTSAT--FHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTGAGWGGCTIHLVPSG 473 (520)
T ss_dssp HHHHHHHHTCSS--CCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEEEES
T ss_pred HHHHHHHHHcCC--cccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhCCCCEEEEecCCCCceEEEEEcCC
Confidence 22222200 00011379999999999999999 56999999999999999999 999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHCCc----------eEEEeeecCCceEEE
Q 045151 347 PTLLSATVVEKVTTELETCGF----------QCLIAGIGGTGVEVC 382 (387)
Q Consensus 347 ~~~~~~~~~~~i~~~~~~~g~----------~~~~~~~~~~G~~v~ 382 (387)
+.+.++++++.+.+.|.++++ .+++++++ .|++|-
T Consensus 474 ~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~GA~i~ 518 (520)
T 3v2u_C 474 ANGNVEQVRKALIEKFYNVRYPDLTDEELKDAIIVSKPA-LGTCLY 518 (520)
T ss_dssp TTCSHHHHHHHHHHHTHHHHCTTCCHHHHHHHEEECCCC-CCSEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCccccccCCCeEEEecCC-CceEEe
Confidence 788888888888887776543 26777665 588774
No 8
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=1.7e-44 Score=356.64 Aligned_cols=319 Identities=20% Similarity=0.225 Sum_probs=239.0
Q ss_pred eEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCC--ceeeeehhhHHhhhccCCCCCC
Q 045151 3 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDME--LNFSWSVTRIKATLSHLGSPFP 80 (387)
Q Consensus 3 ~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~--~~~~~~l~~~~~~~~~~~~~~~ 80 (387)
++++||||++|+|||+||+|+.+|++||++++++.++++ +++.+++.+.+.+ ...+++++++..
T Consensus 49 ~~~~APgkv~L~Geh~d~~G~~~l~~aI~l~~~v~v~~~----~~~~i~i~~~~~~~~~~~~~~~~~~~~---------- 114 (419)
T 1pie_A 49 EYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLR----EDKKVKLYSENFPKLGVIEFDLDEVEK---------- 114 (419)
T ss_dssp EEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEEC----SSSEEEEEETTCGGGCCEEEETTCTTS----------
T ss_pred EEEEeeEEEEEcccceeeCCCEEEEEEEcccEEEEEEEC----CCCEEEEEECCCCCcceeEEecccccC----------
Confidence 789999999999999999999999999999999999875 4556888776653 234455443210
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCc-cCeEEEEEecCCCCCCCChhHHHHHHHHHHHH
Q 045151 81 STPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGF-KPATVVVTSDLPLGAGLGSSAAFCVSLTAALL 159 (387)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~ 159 (387)
+ ...+|.+++++++..+. . ..... .|++|.++++||.++|||||||+++|++.|++
T Consensus 115 --~--~~~~~~n~v~~~~~~l~----------------~---~g~~~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~ 171 (419)
T 1pie_A 115 --K--DGELWSNYVKGMIVMLK----------------G---AGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLD 171 (419)
T ss_dssp --C--CTTCTHHHHHHHHHHHH----------------H---TTCCCCSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHH
T ss_pred --C--CCcCHHHHHHHHHHHHH----------------H---hCCCCCCCEEEEEECCCCCCCChhHHHHHHHHHHHHHH
Confidence 0 12467888876654321 0 11233 68999999999999999999999999999999
Q ss_pred HhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cceeEeecc---eEEEe--CCCcccccCC-CCceE
Q 045151 160 GSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYGN---IIKFR--SGNMTCIKSN-MPLKM 232 (387)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~~~~~~Gg---~i~~~--~~~~~~l~~~-~~~~~ 232 (387)
.+++.+ +++ ++|+++|+.+|+.++|.++|+ |+++|++|| ++.++ +..+++++++ +++++
T Consensus 172 ~l~g~~-----------ls~---~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~~~~~~l~~~~~~~~~ 237 (419)
T 1pie_A 172 DLFNLN-----------VPR---LELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVPVELRDYDI 237 (419)
T ss_dssp HHTTCC-----------CCH---HHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTTCCEEEEECCCTTEEE
T ss_pred HHhCCC-----------CCH---HHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEeecCCCceEEeecCCCCcEE
Confidence 999975 554 677999999999999999997 999999997 44444 3347778876 68999
Q ss_pred EEEEeCCCCChHH------------HHHHHHH------HHhhChhHH-------------HHHHHHHHHH--HHHHHHHH
Q 045151 233 LITNTKVGRNTRA------------LVAGVSE------RSMRHPDAM-------------SSVFNAVDSI--SKELSTII 279 (387)
Q Consensus 233 ll~~t~~~~~T~~------------~~~~~~~------~~~~~~~~~-------------~~~~~~i~~i--~~~~~~~l 279 (387)
+|++|+++++|.. +++.+.+ .++..++.+ +.....+.++ +..+..+|
T Consensus 238 vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~~~~v~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~v~e~~r~~~~~~al 317 (419)
T 1pie_A 238 VIMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAF 317 (419)
T ss_dssp EEEECCCCCCTTCHHHHHHHHHHHHHHHHHHHHCCCSSGGGCCHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCccccccchHHHHHHHHHHHHHHHhhccccCchhhCCHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998752 1111110 000111111 0111112221 33445666
Q ss_pred cCCCCCCCcchHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHhhc-C-CcccccCCCCCCeEEEEeCCCCCHHHHH
Q 045151 280 ESPTPDDLSITEKEERLEELMEMNQGLLQ-CMGVSHSSIETVLRTTLKF-K-LASKLTGAGGGGCALTLLPTLLSATVVE 356 (387)
Q Consensus 280 ~~~~~~~~~~~~d~~~l~~~~~~~~~~l~-~~~~s~p~l~~l~~~a~~~-g-~gaklsGaG~Gg~v~al~~~~~~~~~~~ 356 (387)
.. +|++.|+++|+++|..++ .+++++|+++++++.+++. | +|+||||||||||+++|++++.++++.+
T Consensus 318 ~~---------~d~~~lg~lm~~~~~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~lsGaG~Gg~v~al~~~~~a~~~~~ 388 (419)
T 1pie_A 318 VA---------GNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRK 388 (419)
T ss_dssp HH---------TCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHH
T ss_pred Hc---------CCHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcCCCceeeEecCCCCeEEEEEEchhhHHHHHH
Confidence 64 789999999999999998 5899999999999999997 9 9999999999999999999866677788
Q ss_pred HHHHHHHHC-C--ceEEEeeecCCceEEE
Q 045151 357 KVTTELETC-G--FQCLIAGIGGTGVEVC 382 (387)
Q Consensus 357 ~i~~~~~~~-g--~~~~~~~~~~~G~~v~ 382 (387)
++.+.|.+. | ..++++++ ++|+++.
T Consensus 389 ~l~~~~~~~~g~~~~~~~~~~-~~Ga~v~ 416 (419)
T 1pie_A 389 AVGQVYEEVVGYPASFYVAQI-GSGSTKL 416 (419)
T ss_dssp HHHHHHHHHHSSCCEEEECCB-CCCSBCC
T ss_pred HHHHHHHHhcCCCCeEEEEcC-CCCeeec
Confidence 888877653 3 36788887 4798775
No 9
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-43 Score=336.94 Aligned_cols=296 Identities=27% Similarity=0.333 Sum_probs=228.4
Q ss_pred eEEEcCceEEEEeccceeeCCeeeEeeeccc-eEEEEEccCCCCCCCc-EEEEecCCCceeeeehhhHHhhhccCCCCCC
Q 045151 3 VKARAPGKIILAGEHAVVHGSTAVAACIDLY-TYVSLRFPSDSDDDDT-LKLVLKDMELNFSWSVTRIKATLSHLGSPFP 80 (387)
Q Consensus 3 ~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~-~~~~v~~~~~~~~~~~-v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (387)
+.++|||||+|+|||+||||+.+|+++|+++ ++++++++ +++. +++.+.+++. ++.
T Consensus 7 ~~~~APgkinL~Ge~~d~~g~~~l~~ai~~~~~~v~v~~~----~~~~~i~~~~~~~~~----~~~-------------- 64 (308)
T 2x7i_A 7 GYGESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEAL----ESGNYSSIKSDVYDG----MLY-------------- 64 (308)
T ss_dssp EEEEEEEEEEEEEBTTCCTTSCEEEEEEEEEEEEEEEEEC----CTTCCCEEEEEECSS----CCC--------------
T ss_pred eEEEEeeEEEEEecCeeecCCeEEEEEEcCCEEEEEEEEC----CCCCeeEEEecCCCC----Chh--------------
Confidence 7899999999999999999999999999985 99999874 3334 5655432210 000
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 045151 81 STPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLG 160 (387)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~ 160 (387)
...+|.+++.++++.+. ...+|++|+++++||.++|||||||+++|++.|++.
T Consensus 65 -----~~~~~~~~v~~~~~~~~----------------------~~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~ 117 (308)
T 2x7i_A 65 -----DAPDHLKSLVNRFVELN----------------------NITEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYD 117 (308)
T ss_dssp -----CTTSCHHHHHHHHHHHT----------------------TCCSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHH
T ss_pred -----hhhHHHHHHHHHHHHHH----------------------hhCCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHH
Confidence 01245677776654321 123589999999999999999999999999999999
Q ss_pred hcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCCC-cccccCCCCceEEEEEeCC
Q 045151 161 SLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGN-MTCIKSNMPLKMLITNTKV 239 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~~-~~~l~~~~~~~~ll~~t~~ 239 (387)
+++.+ +++ ++++++|..+|+.++|.+||.|++++.+||++.++++. +++++.+.++.+++++|+.
T Consensus 118 l~~~~-----------l~~---~~l~~la~~~E~~~~g~~sG~d~~~~~~g~~~~~~~g~~~~~~~~~~~~~~vi~~~~~ 183 (308)
T 2x7i_A 118 FLGKS-----------LTK---EELIEKANWAEQIAHGKPSGIDTQTIVSGKPVWFQKGHAETLKTLSLDGYMVVIDTGV 183 (308)
T ss_dssp HHTCC-----------CCH---HHHHHHHHHHHHHHHSSCCHHHHHHHHHTSCEEEETTEEEECSCCCBSSEEEEEECCC
T ss_pred HhCCC-----------CCH---HHHHHHHHHHHHHHCCCCchHHHHHhhCCceEEEEcCCCceEeccCCCceEEEEECcC
Confidence 99975 554 66789999999999999999999999999988887543 5677766688999999999
Q ss_pred CCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Q 045151 240 GRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIET 319 (387)
Q Consensus 240 ~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~p~l~~ 319 (387)
+++|.++++.+.+.....+...+ ++.+..++.++.+++.. +|++.|+++|+++|..++.+++++|++++
T Consensus 184 ~~sT~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~al~~---------~d~~~l~~~~~~~~~~~~~~~~~~p~l~~ 252 (308)
T 2x7i_A 184 KGSTRQAVHDVHKLCEDPQYMSH--VKHIGKLVLRASDVIEH---------HKFEALADIFNECHADLKALTVSHDKIEQ 252 (308)
T ss_dssp --CCSCCCC--------CCHHHH--HHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCchHHH--HHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99998776555433322232211 44455556667778876 78999999999999999988899999999
Q ss_pred HHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCc-eEEEeeec
Q 045151 320 VLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGF-QCLIAGIG 375 (387)
Q Consensus 320 l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~-~~~~~~~~ 375 (387)
+++.+++.| +|++|||||+|||+++|+++ ++.++++.+++++.+. .+|+++++
T Consensus 253 l~~~~~~~Ga~ga~~sGaG~GG~v~~l~~~---~~~~~~~~~~l~~~~~~~~~~~~~~ 307 (308)
T 2x7i_A 253 LMKIGKENGAIAGKLTGAGRGGSMLLLAKD---LPTAKNIVKAVEKAGAAHTWIENLG 307 (308)
T ss_dssp HHHHHHHTTCSEEEESBTTTCSSEEEEESS---HHHHHHHHHHHHHTTCSEEEEEECB
T ss_pred HHHHHHHCCCcEEEeeccCCCcEEEEEeCC---hhHHHHHHHHHHhCCCceEeeEeCC
Confidence 999999999 89999999999999999987 3456788888988884 67887764
No 10
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=100.00 E-value=2.7e-43 Score=335.70 Aligned_cols=307 Identities=25% Similarity=0.407 Sum_probs=231.8
Q ss_pred ceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCCC
Q 045151 2 EVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPS 81 (387)
Q Consensus 2 ~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 81 (387)
+++++|||||+|+|||+|++|+.+|++|||+|+++.++++ ++..+++.+.+.+...+|++++... .
T Consensus 5 ~~~~~APgki~L~geh~~~~G~~~l~~ai~~~~~v~v~~~----~~~~i~i~~~~~~~~~~~~~~~~~~-~--------- 70 (317)
T 1kkh_A 5 HMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKET----QEDEIILNLNDLNKSLGLNLNEIKN-I--------- 70 (317)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEC----CSSEEEEEETTTTEEEEEETTTGGG-C---------
T ss_pred CEEEEccEEEEEEcCCeeEcCCEEEEEEecCeEEEEEEEC----CCCeEEEEeCCCCCceEEEeccCCc-c---------
Confidence 4689999999999999999999999999999999999874 4457888776654444555432111 0
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHh
Q 045151 82 TPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGS 161 (387)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~ 161 (387)
....| ++++.+++.+. ..+. +.......|++|.++++||.++|||||||+++|++.|++.+
T Consensus 71 ----~~~~~-~~~~~~~~~~~------------~~~~--~~~~~~~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l 131 (317)
T 1kkh_A 71 ----NPNNF-GDFKYCLCAIK------------NTLD--YLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGF 131 (317)
T ss_dssp ----CGGGS-GGGHHHHHHHH------------HHHH--HTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHT
T ss_pred ----Ccccc-hHHHHHHHHHH------------HHHH--hhcccCCCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 01223 33333332110 0000 00001146899999999999999999999999999999999
Q ss_pred cCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCCCcccccCC------CCceEEEE
Q 045151 162 LNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSN------MPLKMLIT 235 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~~~~~l~~~------~~~~~ll~ 235 (387)
++.+ +++ ++++++|+.+|+.++|.++|.|++++++||++.++.+.+++++.+ .+++++++
T Consensus 132 ~~~~-----------l~~---~~l~~~a~~~E~~~~g~~sg~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~l~~~~~~vl~ 197 (317)
T 1kkh_A 132 YNKE-----------LKD---DEIAKLGYMVEKEIQGKASITDTSTITYKGILEIKNNKFRKIKGEFEEFLKNCKFLIVY 197 (317)
T ss_dssp TTCC-----------CCH---HHHHHHHHHHHHHHSSSCCSHHHHHHHHCSEEEESSSCEEEECHHHHHHHHTCCEEEEE
T ss_pred hCCC-----------CCH---HHHHHHHHHHHHHhcCCCchHHHHHHHhCCeEEEcCCCceEecCCcccccccCcEEEEE
Confidence 9975 544 677999999999999999999999999999877754456666542 12589999
Q ss_pred EeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCH
Q 045151 236 NTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHS 315 (387)
Q Consensus 236 ~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~p 315 (387)
+|+.+++|.++++.+...+.. ...++++.++ +.+++.. +|++.|+++|+++|..++.+++++|
T Consensus 198 ~~~~~~~T~~~~~~~~~~~~~-----~~~~~~~~~~---~~~a~~~---------~d~~~l~~~~~~~~~~~~~~~~~~p 260 (317)
T 1kkh_A 198 AEKRKKKTAELVNEVAKIENK-----DEIFKEIDKV---IDEALKI---------KNKEDFGKLMTKNHELLKKLNISTP 260 (317)
T ss_dssp EECCCSCHHHHHHHHHTCTTH-----HHHHHHHHHH---HHHHHHC---------CSHHHHHHHHHHHHHHHHTTTCCCH
T ss_pred ECCCcCcHHHHHHHHHHhhcc-----HHHHHHHHHH---HHHHHHc---------CCHHHHHHHHHHHHHHHHhcCCCCH
Confidence 999999999987765432211 1223333332 3455554 6899999999999999998899999
Q ss_pred HHHHHHHHHhhcCCcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecC
Q 045151 316 SIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGG 376 (387)
Q Consensus 316 ~l~~l~~~a~~~g~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~ 376 (387)
+++++++.+++.|+|++|||||+|||++++++++ + ++++.++|++.|+.++.++++|
T Consensus 261 ~l~~~~~~~~~~G~ga~~sGaG~GG~v~~l~~~~---~-~~~~~~~l~~~g~~~~~~~~~n 317 (317)
T 1kkh_A 261 KLDRIVDIGNRFGFGAKLTGAGGGGCVIILVNEE---K-EKELLKELNKEDVRIFNCRMMN 317 (317)
T ss_dssp HHHHHHHHHHHHSSEEEECSSSSSEEEEEECCGG---G-HHHHHHHHHTSSCEEEEECBCC
T ss_pred HHHHHHHHHHhcCceeEEeecCCCCEEEEEechh---h-HHHHHHHHHhcCCEEEEEEecC
Confidence 9999999999888999999999999999999873 2 6678889998899999888764
No 11
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=3.7e-43 Score=344.96 Aligned_cols=320 Identities=19% Similarity=0.244 Sum_probs=232.9
Q ss_pred ceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCce----eeeehhhHHhhhccCCC
Q 045151 2 EVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELN----FSWSVTRIKATLSHLGS 77 (387)
Q Consensus 2 ~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~----~~~~l~~~~~~~~~~~~ 77 (387)
+++++|||||+|+|||+||+|+.+|++||++++++.++++ +++.++|.+.+.+.. ++++++.... .
T Consensus 36 ~~~~~APgkv~L~Geh~Dy~~~~~l~~ai~~~~~v~v~~~----~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~----- 105 (399)
T 1wuu_A 36 ELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPR----KDGLVSLLTTSEGADEPQRLQFPLPTAQR-S----- 105 (399)
T ss_dssp SEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEE----TTCEEEEEECCSSSCSCSEEEEECCCSSC-C-----
T ss_pred CEEEEeeeeEEEeccccccCCCEEEeEEecccEEEEEEEC----CCCeEEEEECCCCCccccceEEecCcccc-c-----
Confidence 4789999999999999999999999999999999999875 456788888765422 2344321100 0
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHH
Q 045151 78 PFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAA 157 (387)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~A 157 (387)
.+ .....|.+++.+++..+ ......|++|.++++||.++|||||||+++|++.|
T Consensus 106 ----~~-~~~~~~~n~v~~a~~~l---------------------~~~~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~a 159 (399)
T 1wuu_A 106 ----LE-PGTPRWANYVKGVIQYY---------------------PAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTF 159 (399)
T ss_dssp ----CC-CCSSGGGHHHHHHHHHC---------------------SSSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHH
T ss_pred ----cc-cCCCCHHHHHHHHHHHh---------------------cCCCCCCeEEEEECCCCCCCCccHHHHHHHHHHHH
Confidence 00 01346888888766543 11234689999999999999999999999999999
Q ss_pred HHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cceeEeecc---eEEEe--CCCcccccCC-CCc
Q 045151 158 LLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYGN---IIKFR--SGNMTCIKSN-MPL 230 (387)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~~~~~~Gg---~i~~~--~~~~~~l~~~-~~~ 230 (387)
++.+++.+ +++ ++++++|+.+|+.++|.+||+ |+++|++|| .+.++ +..+++++++ +++
T Consensus 160 l~~l~~~~-----------l~~---~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~ 225 (399)
T 1wuu_A 160 LQQLCPDS-----------GTI---AARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKL 225 (399)
T ss_dssp HHHHSCCC-----------SCH---HHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETTTCCEEEEECCCSSE
T ss_pred HHHHhCCC-----------CCH---HHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEEecCCCceEEecCCCCCe
Confidence 99999975 544 677999999999999999996 999999998 34444 3346777766 489
Q ss_pred eEEEEEeCCCCChHH-H-------HHHHHHHHh-----h-ChhH------------HHHHHHHHHHH--HHHHHHHHcCC
Q 045151 231 KMLITNTKVGRNTRA-L-------VAGVSERSM-----R-HPDA------------MSSVFNAVDSI--SKELSTIIESP 282 (387)
Q Consensus 231 ~~ll~~t~~~~~T~~-~-------~~~~~~~~~-----~-~~~~------------~~~~~~~i~~i--~~~~~~~l~~~ 282 (387)
++++++|+.+++|.+ . ....++... . .++. .+.....+.++ +..+..++..
T Consensus 226 ~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~~~~~e~~r~~~~~~al~~- 304 (399)
T 1wuu_A 226 AVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRR- 304 (399)
T ss_dssp EEEEEEEEEEC--CTTTHHHHHHHHHHHHHHTTCSSTTSCCHHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred EEEEEECCCccccccccHHHHHHHHHHHHHHhChhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHhhHHHHHHHHHHHHc-
Confidence 999999999998852 1 111111110 0 0111 11112222222 3345666765
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHhh-cC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHH
Q 045151 283 TPDDLSITEKEERLEELMEMNQGLLQ-CMGVSHSSIETVLRTTLK-FK-LASKLTGAGGGGCALTLLPTLLSATVVEKVT 359 (387)
Q Consensus 283 ~~~~~~~~~d~~~l~~~~~~~~~~l~-~~~~s~p~l~~l~~~a~~-~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~ 359 (387)
+|++.|+++|+++|..++ .+++++|+++++++.+++ .| +|+||||||||||+++|++++..++..+++.
T Consensus 305 --------~d~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l~ 376 (399)
T 1wuu_A 305 --------GDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQ 376 (399)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCceEEeeecCCCccEEEEEEccchHHHHHHHHH
Confidence 789999999999999998 689999999999999999 69 8999999999999999998754445555555
Q ss_pred HHHHHCCceEEEeeecCCceEEE
Q 045151 360 TELETCGFQCLIAGIGGTGVEVC 382 (387)
Q Consensus 360 ~~~~~~g~~~~~~~~~~~G~~v~ 382 (387)
+.| .....++++++ ++|+++.
T Consensus 377 ~~~-~~~~~~~~~~~-~~Ga~~~ 397 (399)
T 1wuu_A 377 EHY-GGTATFYLSQA-ADGAKVL 397 (399)
T ss_dssp HHC-SSCCEEEEECC-CCCSEEC
T ss_pred HHh-CCCCcEEEEcC-CCCeeec
Confidence 544 12236777776 6898875
No 12
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=5.8e-43 Score=350.37 Aligned_cols=326 Identities=19% Similarity=0.234 Sum_probs=230.3
Q ss_pred ceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCc-eeeeehhhHHhhhccCCCCCC
Q 045151 2 EVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMEL-NFSWSVTRIKATLSHLGSPFP 80 (387)
Q Consensus 2 ~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 80 (387)
+++++||||++|+|||+||+|+.+|++||++++++.++++ +++.++|.+.+.+. .+++++++++..
T Consensus 55 ~~~~~APgrv~L~Geh~D~~g~~vl~~AI~~~~~v~v~~~----~~~~i~i~~~~~~~~~~~~~~~~l~~~--------- 121 (478)
T 2a2c_A 55 KFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPV----KTYALQLANTNPLYPDFSTSANNIQID--------- 121 (478)
T ss_dssp SEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEEC----SSSCEEEEESSTTSCCEEECCCCC--C---------
T ss_pred CEEEEeceEEEEeccceeeCCCeEEEEEecccEEEEEEEC----CCCeEEEEECCCCCcceeccchhcccC---------
Confidence 3689999999999999999999999999999999999875 45678888765432 233333322110
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 045151 81 STPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLG 160 (387)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~ 160 (387)
.....|.+++...++. ++..+ ......|++|.++|+||.++|||||||++||++.|++.
T Consensus 122 ----~~~~~~~n~v~~a~~~----------------v~~~~-~~~~~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~ 180 (478)
T 2a2c_A 122 ----KTKPLWHNYFLCGLKG----------------IQEHF-GLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLT 180 (478)
T ss_dssp ----CSSCCHHHHHHHHHHH----------------HHHHT-TCCSCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHH
T ss_pred ----CCcccHHHHHHHHHHH----------------HHHHH-hccCCCceEEEEECCCCCCCCchHHHHHHHHHHHHHHH
Confidence 0124688888654431 11110 00125689999999999999999999999999999999
Q ss_pred hcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cceeEeec---ceE--EEeCCCcccccCCCCceEEE
Q 045151 161 SLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYG---NII--KFRSGNMTCIKSNMPLKMLI 234 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~~~~~~G---g~i--~~~~~~~~~l~~~~~~~~ll 234 (387)
+++.+ +++ .+++++|+.+|+ +.|.++|. |++++++| |++ .|.+...+++++++++.|+|
T Consensus 181 ~~~~~-----------ls~---~~l~~la~~~E~-~~g~~~g~~D~~a~~~G~~g~~~~i~f~~~~~~~~~~~~~~~~vi 245 (478)
T 2a2c_A 181 VLGRN-----------LSK---VELAEICAKSER-YIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVI 245 (478)
T ss_dssp HHTCC-----------CCH---HHHHHHHHHHHG-GGTCCCCSHHHHHHHHCBTTBEEEEETTTTEEEEECCCTTEEEEE
T ss_pred HcCCC-----------CCH---HHHHHHHHHHHh-hcCCCCccHHHHHHHhccCCcEEEEEcCCCceEEecCCCCcEEEE
Confidence 99875 554 677999999998 46666775 99999998 554 44454567788878899999
Q ss_pred EEeCCCCChHH-------------H--------------------------------HHHHHHHHhhChhHHHHH-----
Q 045151 235 TNTKVGRNTRA-------------L--------------------------------VAGVSERSMRHPDAMSSV----- 264 (387)
Q Consensus 235 ~~t~~~~~T~~-------------~--------------------------------~~~~~~~~~~~~~~~~~~----- 264 (387)
++|+++++|.. + ++.+.+.+...+...+++
T Consensus 246 ~~s~~~~~t~~t~~yn~r~~e~~~A~~~L~~~~~~~~~~~~~l~d~~~~~~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~ 325 (478)
T 2a2c_A 246 ANSCVEMNKAATSHFNIRVMECRLAAKLLAKYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLG 325 (478)
T ss_dssp EECCCCCCGGGSSHHHHHHHHHHHHHHHHHHHTTCCTTTCCCHHHHHHHHTCCHHHHHHHHHHHSCSSCBCHHHHHHHHT
T ss_pred EeCCCcccccccchhHHHHHHHHHHHHHHHhhhcccccccchHHhhhhhhcccHHHHHHHHHHhcccccccHHHHHHHhC
Confidence 99999997631 0 001111111000000000
Q ss_pred -----------------------HHHHHHHHHH------HHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhh-cCCCC
Q 045151 265 -----------------------FNAVDSISKE------LSTIIESPTPDDLSITEKEERLEELMEMNQGLLQC-MGVSH 314 (387)
Q Consensus 265 -----------------------~~~i~~i~~~------~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~-~~~s~ 314 (387)
.++..++..+ +..+|... .++|++.|+++|+++|..++. +++++
T Consensus 326 ~~~~~~~~~~l~~~~~~~~~~~~~~ra~h~~~e~~rv~~~~~aL~~~------~~~d~~~lg~lm~~sh~slr~l~~vs~ 399 (478)
T 2a2c_A 326 ISLEELRTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEA------PENMVQLLGELMNQSHMSCRDMYECSC 399 (478)
T ss_dssp CCHHHHHHHTSCGGGTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHC------CTTHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred ccHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHHHHhcccCCC
Confidence 0111122222 22333310 027999999999999999995 46999
Q ss_pred HHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCC--------ceEEEeeecCCceEEEe
Q 045151 315 SSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCG--------FQCLIAGIGGTGVEVCF 383 (387)
Q Consensus 315 p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g--------~~~~~~~~~~~G~~v~~ 383 (387)
|+++++++.+++.| +|+||||||||||+++|++++.++++.+++.+.|.+.+ ..+++++++ .|+++..
T Consensus 400 peld~l~~~a~~~Ga~GarltGAG~GG~viaLv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~p~-~Ga~~~~ 476 (478)
T 2a2c_A 400 PELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQRSDGSLAPEKQSLFATKPG-GGALVLL 476 (478)
T ss_dssp HHHHHHHHHHHHTTCSEEEECTTCSSSEEEEEEEGGGHHHHHHHHHHHHHC---------CCSEEEECCB-CCCEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHhcCccccCCCCcEEEEcCC-CCeEeec
Confidence 99999999999999 99999999999999999998777778888888887654 146777765 7988763
No 13
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=100.00 E-value=9.9e-43 Score=333.85 Aligned_cols=309 Identities=25% Similarity=0.331 Sum_probs=226.6
Q ss_pred eEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCCCC
Q 045151 3 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPST 82 (387)
Q Consensus 3 ~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 82 (387)
+.++|||||+|+|||.+++|+++|.++||+++++.+++.. +++.+++...+. .++.. .
T Consensus 14 ~~~~ApgKi~L~Geh~~~~G~~~l~~ai~~~~~v~v~~~~---~~~~~~~~~~~~----~~~~~-~-------------- 71 (332)
T 2hfs_A 14 GKNIGYGKVILFGEHFVVHGAEAIVAGISEYTECRLEINP---GVPGLQVDDQRP----AIPGY-I-------------- 71 (332)
T ss_dssp SCCEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEET---TCCSEEEEECCC----CCTTH-H--------------
T ss_pred EEEEEeEEEEEecCCEEEcCCeEEEEEecccEEEEEEEcC---CCCCeEEEecCc----ccccc-c--------------
Confidence 5689999999999999999999999999999999998641 133455533221 11110 0
Q ss_pred CCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhC--ccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 045151 83 PTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIG--FKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLG 160 (387)
Q Consensus 83 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~ 160 (387)
....+.+..+++ .++.. .... .+|++|+++++||.++|||||||+++|++.|++.
T Consensus 72 -----~~~~~~~~~a~~----------------~~~~~--~g~~~~~~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~ 128 (332)
T 2hfs_A 72 -----AQKRDEQIKAHQ----------------LVLDH--LKVDLSGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSE 128 (332)
T ss_dssp -----HHHHHHHHHHHH----------------HHHHH--TTBCCSSSEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred -----cccchhHHHHHH----------------HHHHH--cCCccCCCceEEEEEcCCCCCCCccHHHHHHHHHHHHHHH
Confidence 011122222111 11111 0111 2589999999999999999999999999999999
Q ss_pred hcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeC--CC--cccccCCCCceEEEEE
Q 045151 161 SLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRS--GN--MTCIKSNMPLKMLITN 236 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~--~~--~~~l~~~~~~~~ll~~ 236 (387)
+++.+ +++ ++++++|+.+|+.++|.++|.|++++++||++.+.. +. ++++++++++++++++
T Consensus 129 l~~~~-----------l~~---~~l~~~a~~~E~~~~G~~~G~D~~~~~~Gg~~~~~~~~g~~~~~~~~~~~~~~~vl~~ 194 (332)
T 2hfs_A 129 LYQLN-----------LTD---EEVNLSAFVGEGGYHGTPSGADNTAATYGGLILYRRQNGKSVFKPIAFQQRLYLVVVG 194 (332)
T ss_dssp HHTCC-----------CCH---HHHHHHHHHHGGGSSSCCCSHHHHHHHHCEEEEEEECSSSEEEEEECCCSCEEEEEEE
T ss_pred HhCCC-----------CCH---HHHHHHHHHHHHHhcCCCCcHhHHHHhcCCeEEEecCCCCcceeeecCCCCcEEEEEE
Confidence 99975 554 567899999999999999999999999999977753 32 5677777789999999
Q ss_pred eCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCHH
Q 045151 237 TKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSS 316 (387)
Q Consensus 237 t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~p~ 316 (387)
|+.+++|.+++.++...+...+..++..++.+.++..++.+++.. +|++.|+++|+.+|.+++.+++++|+
T Consensus 195 ~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---------~d~~~l~~~~~~~~~~l~~~~~~~p~ 265 (332)
T 2hfs_A 195 TGINASTAKVVNDVHKMKQQQPVQFKRLYDNYTHIVSQAREALQK---------GDLQRLGQLMNANHDLCRQIDVSCRE 265 (332)
T ss_dssp CSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 999999999888766544444443444566666667777777775 78999999999999999988899999
Q ss_pred HHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCC-CHHHHHHHHHHHHHCCceEEEeee-cCCceE
Q 045151 317 IETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLL-SATVVEKVTTELETCGFQCLIAGI-GGTGVE 380 (387)
Q Consensus 317 l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~-~~~~~~~i~~~~~~~g~~~~~~~~-~~~G~~ 380 (387)
++++++.+++.| +|++|||||+|||+++|++++. .++..+.+.+.+...++ +|.+.+ ..+|++
T Consensus 266 l~~l~~~~~~~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l~~~~~~~~~-~~~~~~~~~~g~~ 331 (332)
T 2hfs_A 266 LESIVQTCRTYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPEAKF-IWRYTVQPSAASN 331 (332)
T ss_dssp HHHHHHHHHHTTCSEEEEESSCSSSEEEEEESSHHHHHHHHHHHHHHCTTCCE-EEEEEECCSCC--
T ss_pred HHHHHHHHHHcCCceEEeccCCCCcEEEEEecCcccHHHHHHHHHHHHhcCCc-eEEEEeccCCCCC
Confidence 999999999999 8999999999999999998732 22333334333333343 555544 335554
No 14
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=3.5e-43 Score=339.35 Aligned_cols=315 Identities=22% Similarity=0.218 Sum_probs=229.9
Q ss_pred ceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCCC
Q 045151 2 EVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPS 81 (387)
Q Consensus 2 ~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 81 (387)
|++++|||||+|+|||+||||+++|++|||+++++.++++ +++.+++.+.+.+...+| ++ .
T Consensus 1 m~~~~aP~ki~L~Ge~~d~~~~~~l~~ai~~~~~v~v~~~----~~~~i~i~~~~~~~~~~~-l~---~----------- 61 (350)
T 2cz9_A 1 MIKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKH----GEVILYSEHFGEERKFSL-ND---L----------- 61 (350)
T ss_dssp CEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEE----SSEEEEETTTTEEEEECT-TC---C-----------
T ss_pred CeEEEeccEEEEeecChhhCCCEEEEEEeeceEEEEEEEC----CCCeEEEEECCCCccccc-cC---C-----------
Confidence 3789999999999999999999999999999999999874 334566654432111111 11 0
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHh
Q 045151 82 TPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGS 161 (387)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~ 161 (387)
| ....|.++++.++..+. .......|++|+++++||.++|||||||+++|++.|++.+
T Consensus 62 -~--~~~~~~~~~~~~~~~l~-------------------~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l 119 (350)
T 2cz9_A 62 -R--KENSWIDYVKGIFWVLK-------------------ESDYEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKL 119 (350)
T ss_dssp -C--CCSSTHHHHHHHHHHHH-------------------HTTCCCCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHH
T ss_pred -C--CCCcHHHHHHHHHHHHH-------------------hcCCCCCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHH
Confidence 0 01356677765443211 0112346899999999999999999999999999999999
Q ss_pred cCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcc-cceeEeecc---eEEEe--CCCcccccCCCCceEEEE
Q 045151 162 LNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYGN---IIKFR--SGNMTCIKSNMPLKMLIT 235 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~-D~~~~~~Gg---~i~~~--~~~~~~l~~~~~~~~ll~ 235 (387)
++.+ +++ ++++++|..+|..++|.++|+ |++++.+|+ ++.++ +..+++++++++++++++
T Consensus 120 ~~~~-----------l~~---~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~d~~~~~~~~l~~~~~~~~vl~ 185 (350)
T 2cz9_A 120 YNLK-----------LDS---LSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLDTHTLDYEYIPFPKDVSILVF 185 (350)
T ss_dssp TTCC-----------CCH---HHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEEETTTCCEEEEECCTTEEEEEE
T ss_pred hCCC-----------CCH---HHHHHHHHHHHHHhcCCCccchhHHHHHhcCCCeEEEEecCCCcEEEEcCCCCcEEEEE
Confidence 9975 554 567899999999999999998 999999985 45554 334778888788999999
Q ss_pred EeCCCC--ChHHHHHHH------HHH------Hh-------hChhHH-HHHHHHHHHH--HHHHHHHHcCCCCCCCcchH
Q 045151 236 NTKVGR--NTRALVAGV------SER------SM-------RHPDAM-SSVFNAVDSI--SKELSTIIESPTPDDLSITE 291 (387)
Q Consensus 236 ~t~~~~--~T~~~~~~~------~~~------~~-------~~~~~~-~~~~~~i~~i--~~~~~~~l~~~~~~~~~~~~ 291 (387)
+|+.++ +|.+...+. .+. ++ ..|..+ +...+.+.++ +..+..++.. +
T Consensus 186 ~~~~~~~~~t~~~~~r~~~~~~a~~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~---------~ 256 (350)
T 2cz9_A 186 YTGVRRELASSEYAERKHIAEESLKILGKGSSKEVREGELSKLPPLHRKFFGYIVRENARVLEVRDALKE---------G 256 (350)
T ss_dssp ECSCC----CHHHHHHHHHHHHHHHHHTCSCGGGCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHT---------T
T ss_pred ECCCCCccccchHHHHHHHHHHHHHHhChhhhhhCCHHHHhhCCHHHHHHHHHHhhHHHHHHHHHHHHHh---------C
Confidence 999985 444311110 000 00 112211 1111222222 3345666765 7
Q ss_pred HHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHC-C--
Q 045151 292 KEERLEELMEMNQGLLQ-CMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETC-G-- 366 (387)
Q Consensus 292 d~~~l~~~~~~~~~~l~-~~~~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~-g-- 366 (387)
|++.|+++|+.+|+.++ .+++++|+++++++.+++.| +|+||||||||||+++|++++..++..+++.+.|++. |
T Consensus 257 d~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~~Ga~ga~lsGaG~G~~v~~l~~~~~~~~~~~~l~~~~~~~~~~~ 336 (350)
T 2cz9_A 257 NVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLKRFPWK 336 (350)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHHCCSC
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCCEEEEecCCCceEEEEEEchhhHHHHHHHHHHHHHHhhCCC
Confidence 89999999999999998 48999999999999999999 8999999999999999999866667788888888765 4
Q ss_pred ceEEEeeecCCceEE
Q 045151 367 FQCLIAGIGGTGVEV 381 (387)
Q Consensus 367 ~~~~~~~~~~~G~~v 381 (387)
..++++++ ++|+++
T Consensus 337 ~~~~~~~~-~~Ga~~ 350 (350)
T 2cz9_A 337 ARHFIVEP-SDGVGI 350 (350)
T ss_dssp CEEEEECE-ECCSBC
T ss_pred CcEEEecC-CCCCCC
Confidence 46888888 578763
No 15
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=100.00 E-value=3.5e-40 Score=310.44 Aligned_cols=282 Identities=25% Similarity=0.341 Sum_probs=214.7
Q ss_pred ceEEEcCceEEEEeccceeeCCeeeEeee-ccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCC
Q 045151 2 EVKARAPGKIILAGEHAVVHGSTAVAACI-DLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFP 80 (387)
Q Consensus 2 ~~~~~APgkv~L~GEh~~~~g~~~l~~ai-~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (387)
+++++|||||+|+|||+|+||+.+|.++| ++|+++.+++. + +.+++...+ .
T Consensus 5 ~~~~~aP~ki~L~Ge~~~~~g~~~l~~ai~~~~~~v~v~~~----~-~~~~i~~~~-----------~------------ 56 (292)
T 2oi2_A 5 VGVGQAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPA----E-SPWRLYEED-----------T------------ 56 (292)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEEC----S-SCCCCCCCS-----------H------------
T ss_pred cEEEEeeeEEEEEeCCeeecCCcEEEEEEcCcEEEEEEEEC----C-CceEEEecC-----------c------------
Confidence 47899999999999999999999999999 99999999863 1 222221110 0
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 045151 81 STPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLG 160 (387)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~ 160 (387)
.+.+..+.+. + .....++++|+++++||.++|||||||+++|++.|++.
T Consensus 57 ----------~~~~~~~~~~--------------------~-~~~~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~ 105 (292)
T 2oi2_A 57 ----------LSMAVYASLE--------------------Y-LNITEACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFD 105 (292)
T ss_dssp ----------HHHHHHHHHH--------------------H-HTCSCCCEEEEEC----CCGGGSCHHHHHHHHHHHHHH
T ss_pred ----------cchhhhhhHH--------------------H-hcccCCceEEEEEecCCCCCCchHHHHHHHHHHHHHHH
Confidence 0111111110 0 01124589999999999999999999999999999999
Q ss_pred hcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCCC-cccccCCCCceEEEEEeCC
Q 045151 161 SLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGN-MTCIKSNMPLKMLITNTKV 239 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~~-~~~l~~~~~~~~ll~~t~~ 239 (387)
+++.+ +++ ++++++|..+|+..+|.|+|+|++++.+||++.+.++. +++++++.+..+++++++.
T Consensus 106 ~~~~~-----------l~~---~~l~~la~~~E~~~~~~p~g~d~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 171 (292)
T 2oi2_A 106 YYQAD-----------LPH---DVLEILVNRAEMIAHMNPSGLDAKTCLSDQPIRFIKNVGFTELEMDLSAYLVIADTGV 171 (292)
T ss_dssp HHTCC-----------CCH---HHHHHHHHHHHHHTTCCCCSHHHHHHTCSSCEEEETTTEEEECCCCCSCEEEEEECSS
T ss_pred HhCCC-----------CCH---HHHHHHHHHHHHHhcCCCCchhHHHHhcCceEEEEcCCCceeecCCCCCEEEEEECCC
Confidence 99975 554 67789999999988999999999999999988776544 5666653233388999999
Q ss_pred CCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Q 045151 240 GRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIET 319 (387)
Q Consensus 240 ~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~p~l~~ 319 (387)
+++|.++++.+.+..... .+.++.+.+++..+..++.. +|++.|+++|+++|+.++.+++++|++++
T Consensus 172 ~~sT~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~al~~---------~d~~~l~~~~~~~~~~l~~~~~~~p~l~~ 238 (292)
T 2oi2_A 172 YGHTREAIQVVQNKGKDA----LPFLHALGELTQQAEIAISQ---------KDAEGLGQILSQAHLHLKEIGVSSLEADS 238 (292)
T ss_dssp CCCHHHHHHHHHHTGGGG----HHHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999999877655432110 22345566666667777876 78999999999999999988999999999
Q ss_pred HHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCc-eEEEe
Q 045151 320 VLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGF-QCLIA 372 (387)
Q Consensus 320 l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~-~~~~~ 372 (387)
+++.+++.| +|++|||||+|||+++++++ ++..+++.+++++.|+ ..|+.
T Consensus 239 l~~~~~~~Ga~ga~~sGaG~Gg~v~~l~~~---~~~~~~~~~~l~~~~~~~~~~~ 290 (292)
T 2oi2_A 239 LVETALSHGALGAKMSGGGLGGCIIALVTN---LTHAQELAERLEEKGAVQTWIE 290 (292)
T ss_dssp HHHHHHTTTCSEEEEESSSSSSEEEEEESC---HHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHhCCCceeeeccCCCCcEEEEEecC---chHHHHHHHHHHhcCcceeccc
Confidence 999999999 99999999999999999987 3456788888988887 44654
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=100.00 E-value=7.1e-32 Score=254.26 Aligned_cols=289 Identities=15% Similarity=0.167 Sum_probs=203.8
Q ss_pred CceEEEcCceEEEEeccceeeCCeeeEeeeccc-eEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCC
Q 045151 1 MEVKARAPGKIILAGEHAVVHGSTAVAACIDLY-TYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPF 79 (387)
Q Consensus 1 ~~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~-~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 79 (387)
|.++++||+|+.++|++.+ ++++++|.| .++.+++. +++.+++.... .+++
T Consensus 1 ~~i~v~aPaki~nlG~g~~-----vl~~a~d~~~~~~~~~~~----~~~~~~i~~~~---------~~~~---------- 52 (296)
T 1h72_C 1 MKVRVKAPCTSANLGVGFD-----VFGLCLKEPYDVIEVEAI----DDKEIIIEVDD---------KNIP---------- 52 (296)
T ss_dssp CEEEEEEEEEEECTGGGTT-----TEEEEEEEEEEEEEEEEE----SSSSEEEEESC---------TTSC----------
T ss_pred CeEEEEEEeehhccccchh-----hhHHhcccccEEEEEEec----CCCeEEEEEcC---------CcCC----------
Confidence 5688999999999998644 899999985 45556543 33445554321 0100
Q ss_pred CCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHH
Q 045151 80 PSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALL 159 (387)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~ 159 (387)
...|.+++.++++.+ .. ......|++|.++++||.++|||||||+++|++.|++
T Consensus 53 -------~~~~~n~v~~a~~~~----------------~~---~~g~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~ 106 (296)
T 1h72_C 53 -------TDPDKNVAGIVAKKM----------------ID---DFNIGKGVKITIKKGVKAGSGLGSSAASSAGTAYAIN 106 (296)
T ss_dssp -------CCTTTSHHHHHHHHH----------------HH---HTTCCCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHH
T ss_pred -------CCCccCcHHHHHHHH----------------HH---HhCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHHHHH
Confidence 001334554443321 10 0011258999999999999999999999999999999
Q ss_pred HhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeC-CC--cccccCCCCceEEEEE
Q 045151 160 GSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRS-GN--MTCIKSNMPLKMLITN 236 (387)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~-~~--~~~l~~~~~~~~ll~~ 236 (387)
++++.+ +++ ++++++|..+|...+|.+++.|++++++||++.+.. +. ++++++++++++++++
T Consensus 107 ~l~~~~-----------l~~---~~l~~la~~~e~~~~g~~~~ddv~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~vl~~ 172 (296)
T 1h72_C 107 ELFKLN-----------LDK---LKLVDYASYGELASSGAKHADNVAPAIFGGFTMVTNYEPLEVLHIPIDFKLDILIAI 172 (296)
T ss_dssp HHTTCC-----------CCH---HHHHHHHHHHHHHHHSSCCCTTHHHHHHCSEEEEEETTTTEEEEECCCSCCCEEEEC
T ss_pred HHhCCC-----------CCH---HHHHHHHHHhcCcccCCCCccchHHHHhCCEEEEEeCCceEEEEEcCCCCeEEEEEe
Confidence 999976 554 567899999999999999877888899999877653 33 5677777789999999
Q ss_pred eCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHH--HHHHHHHhhcCCCC
Q 045151 237 TKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELM--EMNQGLLQCMGVSH 314 (387)
Q Consensus 237 t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~--~~~~~~l~~~~~s~ 314 (387)
|+.+.+|.++++.+.+ ..+ ....+.++..+ ..+..++.. +|++.|+++| +..|..++. .++
T Consensus 173 p~~~~~T~~~~~~l~~---~~~--~~~~~~~~~~~-~~~~~al~~---------~d~~~~~~~~~~n~~h~~~~~--~~~ 235 (296)
T 1h72_C 173 PNISINTKEAREILPK---AVG--LKDLVNNVGKA-CGMVYALYN---------KDKSLFGRYMMSDKVIEPVRG--KLI 235 (296)
T ss_dssp CSSCCCHHHHHHTSCS---CCC--HHHHHHHHHHH-HHHHHHHHT---------TCHHHHHHHHTTCCSSHHHHH--TTS
T ss_pred CCCCccHHHHHHhccC---cCc--HHHHHHHHHHH-HHHHHHHHc---------CCHHHHHHHHhcCcchhhhhh--ccC
Confidence 9999999887543211 111 11222333332 245666665 7899999999 444444442 679
Q ss_pred HHHHHHHHHHhhcCCcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecCCceEE
Q 045151 315 SSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEV 381 (387)
Q Consensus 315 p~l~~l~~~a~~~g~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~G~~v 381 (387)
|+++++++.+++.++|++||||| +|+++|+++ +.++++.+++++.+...+++++ ++|++|
T Consensus 236 p~l~~~~~~~~~~a~ga~~sGsG--~~v~~l~~~----~~~~~~~~~l~~~~~~~~~~~~-~~Ga~v 295 (296)
T 1h72_C 236 PNYFKIKEEVKDKVYGITISGSG--PSIIAFPKE----EFIDEVENILRDYYENTIRTEV-GKGVEV 295 (296)
T ss_dssp TTHHHHHHHHTTTEEEEEECTTS--SCEEEEECG----GGHHHHHHHHHHHCSCEEEECB-CCCCEE
T ss_pred ccHHHHHHHHHhhcceEEEecCC--hheEEEecH----HHHHHHHHHHHHhccCceeccC-CCCeEe
Confidence 99999999998777789999999 699999943 3456677777766544447788 899986
No 17
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.97 E-value=6.7e-29 Score=234.53 Aligned_cols=285 Identities=16% Similarity=0.162 Sum_probs=201.1
Q ss_pred ceEEEcCceEEE----Eeccce-eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCC
Q 045151 2 EVKARAPGKIIL----AGEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLG 76 (387)
Q Consensus 2 ~~~~~APgkv~L----~GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~ 76 (387)
++.++||+|++| .|.+.| ||.--.+-.+|++|-++.+++. ++..+++..... ..++.
T Consensus 5 ~~~~~apAKiNL~L~v~~~r~DGyh~l~s~~~al~l~D~l~~~~~----~~~~i~~~g~~~--------~~~p~------ 66 (306)
T 3pyf_A 5 SVTVRVPGKVNLYLAVGDRREDGYHELTTVFHAVSLVDEVTVRNA----DVLSLELVGEGA--------DQLPT------ 66 (306)
T ss_dssp CEEEEEEEEEEEEEEECCCCTTSCCCEEEEEEEEEEEEEEEEEEC----SSCEEEEESTTG--------GGSCC------
T ss_pred cEEEEecceEEeecccCCcCCCCCcchheeEEEcccCCEEEEEEC----CCCEEEEeCCCc--------cCCCC------
Confidence 478999999999 788887 5556677789999999999863 333444432110 01110
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHH
Q 045151 77 SPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTA 156 (387)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~ 156 (387)
+..|++.++++.+ .. ......+++|+++++||.++|||||||+++|++.
T Consensus 67 ------------~~~Nlv~~A~~~l----------------~~---~~g~~~~~~i~i~~~iP~~~GLGsssa~a~a~l~ 115 (306)
T 3pyf_A 67 ------------DERNLAWQAAELM----------------AE---HVGRAPDVSIMIDKSIPVAGGMAGGSADAAAVLV 115 (306)
T ss_dssp ------------STTSHHHHHHHHH----------------HH---HTTCCCCEEEEEEECSCTTSSSCHHHHHHHHHHH
T ss_pred ------------CCccHHHHHHHHH----------------HH---HhCCCCCeEEEEecCCCCCCCcchHHHHHHHHHH
Confidence 0012333222211 10 1112358999999999999999999999999999
Q ss_pred HHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CC-CcccccCCCCceEEE
Q 045151 157 ALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SG-NMTCIKSNMPLKMLI 234 (387)
Q Consensus 157 Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~-~~~~l~~~~~~~~ll 234 (387)
|++.+++.+ +++ ++++++|..+| .|+++|++||++... .+ .+++++.++++++++
T Consensus 116 al~~~~~~~-----------l~~---~~l~~la~~~~---------~Dv~~~~~Gg~~~~~g~ge~~~~l~~~~~~~~vl 172 (306)
T 3pyf_A 116 AMNSLWELN-----------VPR---RDLRMLAARLG---------SDVPFALHGGTALGTGRGEELATVLSRNTFHWVL 172 (306)
T ss_dssp HHHHHTTCC-----------CCH---HHHHHHHHHHC---------TTHHHHHHBSEEEECSSSSCCEEECCSSCEEEEE
T ss_pred HHHHHhCCC-----------cCH---HHHHHHHHHhC---------CCCceeecCceEEEEeeCCeEEEccCCCCcEEEE
Confidence 999999976 655 55678887765 499999999987664 33 367777778899999
Q ss_pred EEeCCCCChHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHH-HHHHHHhhcC
Q 045151 235 TNTKVGRNTRALVAGVSERSMR--HPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELME-MNQGLLQCMG 311 (387)
Q Consensus 235 ~~t~~~~~T~~~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~-~~~~~l~~~~ 311 (387)
++|+.+.+|+++++.+...+.. .+. .. ....+..++.. +|++.+++.|. .-+....
T Consensus 173 ~~P~~~vsT~~a~~~l~~~~~~~~~~~-----~~----~~~~~~~al~~---------~d~~~l~~~l~n~le~~~~--- 231 (306)
T 3pyf_A 173 AFADSGLLTSAVYNELDRLREVGDPPR-----LG----EPGPVLAALAA---------GDPDQLAPLLGNEMQAAAV--- 231 (306)
T ss_dssp EECSSCCCHHHHHHHHHHHHHHSCCCC-----CC----CHHHHHHHHHH---------TCHHHHGGGCEETTHHHHH---
T ss_pred EECCCCCcHHHHHHhhhhhcccccccc-----cc----CHHHHHHHHHh---------CCHHHHHHHhccchHHHHH---
Confidence 9999999999987765543211 010 00 01233445543 67777877763 2122211
Q ss_pred CCCHHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCc--eEEEeeecCCceEEEec
Q 045151 312 VSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGF--QCLIAGIGGTGVEVCFG 384 (387)
Q Consensus 312 ~s~p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~--~~~~~~~~~~G~~v~~~ 384 (387)
..+|+++++++.+++.| +|++|||+| +|+|+|+++ ++.++++.+.|++.|+ .+++++++++|++|+..
T Consensus 232 ~~~P~l~~i~~~~~~~Ga~ga~mSGsG--ptvfal~~~---~~~a~~~~~~l~~~g~~~~v~~~~~~~~Ga~v~~~ 302 (306)
T 3pyf_A 232 SLDPALARALRAGVEAGALAGIVSGSG--PTCAFLCTS---ASSAIDVGAQLSGAGVCRTVRVATGPVPGARVVSA 302 (306)
T ss_dssp HHCTHHHHHHHHHHHTTCSEEEECTTS--SEEEEEESS---HHHHHHHHHHHHHTTSSSEEEEEEECCBCSEEC--
T ss_pred HhChHHHHHHHHHHhcCCCEEEEcCcc--hhheEEeCC---HHHHHHHHHHHHhcCCcceEEEeecCCCCCEEecC
Confidence 23899999999999999 999999998 899999997 4567888999998875 89999999999999743
No 18
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.96 E-value=6.1e-28 Score=227.19 Aligned_cols=283 Identities=19% Similarity=0.165 Sum_probs=189.3
Q ss_pred CceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCC
Q 045151 1 MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFP 80 (387)
Q Consensus 1 ~~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (387)
||+++++|++.--+|- |..+|.+|||+|.++.+++. ++.+++..... ..++..
T Consensus 1 ~m~~v~vPat~anlG~-----Gfd~lg~al~l~d~v~~~~~-----~~~~~i~~~~~--------~~~p~~--------- 53 (298)
T 3hul_A 1 MSLRIRVPATTANLGP-----GFDSCGLALTLYLTLDIGAE-----ADSWYIEHNIG--------GGIPHD--------- 53 (298)
T ss_dssp -CEEEEEEEEEESCTT-----CTTTEEEEEEEEEEEEEEEE-----CSSCEEECCCC--------TTCCSS---------
T ss_pred CeEEEEEeeceeccCC-----CcchhhhhcccceEEEEEEc-----CCceEEEecCc--------ccCCCC---------
Confidence 7799999999444444 78899999999999999642 13344432210 011100
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 045151 81 STPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLG 160 (387)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~ 160 (387)
. .|.+.+++..+. ....|++|+++++||.++|||||||+++|++.|++.
T Consensus 54 ------~---~nlv~~a~~~~~----------------------~~~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~ 102 (298)
T 3hul_A 54 ------E---TNVIIETALNLA----------------------PNLTPHHLVMTCDIPPARGLGSSSAAVVAGIELANT 102 (298)
T ss_dssp ------T---TSHHHHHHHHHC----------------------TTCCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHH
T ss_pred ------C---CcHHHHHHHHHh----------------------ccCCceEEEEecCCCCCCCccHHHHHHHHHHHHHHH
Confidence 0 012222221110 124689999999999999999999999999999999
Q ss_pred hcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-c--ccccCCCCceEEEEE
Q 045151 161 SLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-M--TCIKSNMPLKMLITN 236 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~--~~l~~~~~~~~ll~~ 236 (387)
+++.+ +++ ++++++|..+| | ++.|++++++||++... .++ + .++++ ++++++++.
T Consensus 103 ~~~~~-----------l~~---~el~~la~~~e----g--~~ddv~~~~~GG~~~~~g~ge~~~~~~~~~-p~~~~vlv~ 161 (298)
T 3hul_A 103 LAELN-----------LSK---EEKVRIAAEIE----G--HPDNVAPAVLGNWVVGAKLDGEDFYVRHLF-PDCALIAFI 161 (298)
T ss_dssp HTTCC-----------CCH---HHHHHHHHHHH----S--CSTTHHHHHHCSEEEEEEETTEEEEEEECC-C-CEEEEEE
T ss_pred HhCCC-----------CCH---HHHHHHHHHhc----C--CcccCcccccCCEEEEEeCCCcEEEEEcCC-CCeEEEEEE
Confidence 99976 655 56788888887 2 33477889999986543 333 3 35554 469999999
Q ss_pred eCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHH--HHHHHhhcCCCC
Q 045151 237 TKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEM--NQGLLQCMGVSH 314 (387)
Q Consensus 237 t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~--~~~~l~~~~~s~ 314 (387)
|+.+.+|+++++.+.+ ..+ ..+.+..+.. ...+..++.. +|++.++++|+. .|+.++. ..+
T Consensus 162 p~~~~sT~~a~~~l~~---~~~--~~~~~~~~~~-~~~~~~al~~---------~d~~~l~~~l~nd~~~e~~~~--~~~ 224 (298)
T 3hul_A 162 PKAELLTSESRGVLPD---TLP--FKEAVQASSI-ANVMIAAILR---------NDMTLAGEMMERDLWHEKYRS--QLV 224 (298)
T ss_dssp CCCCCC--------CC---EEE--HHHHHHHHHH-HHHHHHHHTT---------TCHHHHHHHHTCCCC-----C--TTG
T ss_pred CCCCCCcHHHHHHHhh---hcc--HHHHHHHHHH-HHHHHHHHHc---------CCHHHHHHHHhhhHHHHHHHH--hhC
Confidence 9999999887543321 111 1111222222 2345666765 789999999862 2344431 238
Q ss_pred HHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCC--ceEEEeeecCCceEEEecc
Q 045151 315 SSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCG--FQCLIAGIGGTGVEVCFGG 385 (387)
Q Consensus 315 p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g--~~~~~~~~~~~G~~v~~~~ 385 (387)
|+++++++.+++.| +|++||||| +|+|+|++. +.++++.++|++.+ +.+++++++++|++|+.++
T Consensus 225 p~l~~l~~~~~~~Ga~ga~~SGsG--ptv~al~~~----~~a~~v~~~l~~~~~~~~~~~~~~~~~Ga~v~~~~ 292 (298)
T 3hul_A 225 PHLAQIRDVAKNQGAYAACLSGAG--PTVLVFAPR----NLANKLQTSLQTLEIDADVLLLDVEGSGAEVFREG 292 (298)
T ss_dssp GGHHHHHHHHHTTTCCEEEECTTS--SCEEEEECG----GGHHHHHHHHHTTCCSSEEEEEEBCCCCCEEEECC
T ss_pred chHHHHHHHHHHCCCEEEEEeccc--hheEEEECH----HHHHHHHHHHHhcCCCcEEEEcccCCCceEEEecc
Confidence 99999999999999 999999999 799999984 34677888888875 6899999999999999876
No 19
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.95 E-value=2.2e-26 Score=219.66 Aligned_cols=298 Identities=17% Similarity=0.125 Sum_probs=191.7
Q ss_pred CceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCC
Q 045151 1 MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFP 80 (387)
Q Consensus 1 ~~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (387)
|...++||++|.|+|+|.+++++..||...+..+++.. .. .+.+++. +.+++. .++.++...
T Consensus 8 ~~~~~~ap~nialiky~gk~~~~~~lP~~dslglal~~-~~----~~~~v~~-~~~~~~-~~~~i~g~~----------- 69 (332)
T 3qt5_A 8 KSGKARAHTNIALIKYWGKADETYIIPMNNSLSVTLDR-FY----TETKVTF-DPDFTE-DCLILNGNE----------- 69 (332)
T ss_dssp EEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEE-EE----EEEEEEE-ETTCSS-CEEEETTEE-----------
T ss_pred EEEEEEecCcEEEEeeeeeccCCccccCCCceEEEecC-CC----CeeEEEE-cCCCCc-cEEEECCcc-----------
Confidence 45678999999999999999988887766666666541 11 1112221 222110 112211100
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 045151 81 STPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLG 160 (387)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~ 160 (387)
...++.+.+.++++.+. . ......+++|.++++||.++|||||||.++|++.|++.
T Consensus 70 -----~~~~~~n~v~~~~~~~~----------------~---~~~~~~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~ 125 (332)
T 3qt5_A 70 -----VNAKEKEKIQNYMNIVR----------------D---LAGNRLHARIESENYVPTAAGLASSASAYAALAAACNE 125 (332)
T ss_dssp -----CCHHHHHHHHHHHHHHH----------------H---HHTCCCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHH
T ss_pred -----CCcchHHHHHHHHHHHH----------------H---hcCCCCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHH
Confidence 01345667766554321 1 11113479999999999999999999999999999999
Q ss_pred hcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCC--C----ccccc---CCCCce
Q 045151 161 SLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSG--N----MTCIK---SNMPLK 231 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~--~----~~~l~---~~~~~~ 231 (387)
+++++ +++ ++++++|..+| | |.+++++||++.+..+ + ..+++ .+++++
T Consensus 126 l~~~~-----------l~~---~el~~la~~~~--------g-~~~~~~~GG~~~~~~g~~~~~~~~~~l~~~~~~~~l~ 182 (332)
T 3qt5_A 126 ALSLN-----------LSD---TDLSRLARRGS--------G-SASRSIFGGFAEWEKGHDDLTSYAHGINSNGWEKDLS 182 (332)
T ss_dssp HHTCC-----------CCH---HHHHHHHHHHC--------G-GGGGGGSCSEEEEECCSSTTTCEEEEECCTTGGGGEE
T ss_pred HhCCC-----------CCH---HHHHHHHHHhc--------C-CchhhhcCCeEEEecCCCCccceeeecccccCCCCcE
Confidence 99976 655 55677776653 3 6677889999776533 2 14454 335788
Q ss_pred EEEEEeCCCCC---hHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 045151 232 MLITNTKVGRN---TRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQ 308 (387)
Q Consensus 232 ~ll~~t~~~~~---T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~ 308 (387)
++++.++...+ |.+.+... ....+. +++.+..+......+..+|.. +|++.|+++|..++..|+
T Consensus 183 ~vv~vp~~~~~~~ss~~~~~~~---~~~s~~-~~~~v~~~~~~~~~l~~Al~~---------~D~~~l~~~~~~d~~~lh 249 (332)
T 3qt5_A 183 MIFVVINNQSKKVSSRSGMSLT---RDTSRF-YQYWLDHVDEDLNEAKEAVKN---------QDFQRLGEVIEANGLRMH 249 (332)
T ss_dssp EEEECCCCCCCC--CHHHHHHH---HHHCTT-HHHHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCCchHHHHHHh---hhcChh-HHHHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHH
Confidence 88888876543 33333222 111121 222333444344566777765 799999999975544443
Q ss_pred h--cC------CCCHHHHHHHHHHh---hcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCC--ceEEEeee
Q 045151 309 C--MG------VSHSSIETVLRTTL---KFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCG--FQCLIAGI 374 (387)
Q Consensus 309 ~--~~------~s~p~l~~l~~~a~---~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g--~~~~~~~~ 374 (387)
. .. ...|+++++++.+. +.| +++.+|||| |++++|+++ +..+++.+.+++.. ++++++..
T Consensus 250 ~~~~~~~p~~~yl~p~~~~i~~~~~~~~~~Ga~~a~~SGaG--Ptv~~l~~~----~~a~~v~~~l~~~~~~~~~~v~~~ 323 (332)
T 3qt5_A 250 ATNLGAQPPFTYLVQESYDAMAIVEQCRKANLPCYFTMDAG--PNVKVLVEK----KNKQAVMEQFLKVFDESKIIASDI 323 (332)
T ss_dssp HHHHTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS--SCEEEEEEH----HHHHHHHHHHHTTSCGGGEEEEEB
T ss_pred HHhcccCCCceeeChHHHHHHHHHHHHHhCCCcEEEEeCCC--CcEEEEECH----HHHHHHHHHHHHhCCCceEEEecc
Confidence 1 11 14689999888885 778 999999888 999999986 24567777777653 46888855
Q ss_pred cCCceEEE
Q 045151 375 GGTGVEVC 382 (387)
Q Consensus 375 ~~~G~~v~ 382 (387)
...|+++.
T Consensus 324 ~g~G~~~~ 331 (332)
T 3qt5_A 324 ISSGVEII 331 (332)
T ss_dssp CSSCCEEC
T ss_pred ccCCcEec
Confidence 66798874
No 20
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.95 E-value=1.3e-27 Score=222.83 Aligned_cols=260 Identities=13% Similarity=0.072 Sum_probs=174.6
Q ss_pred eEEEcCceEEE----Eeccce-eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCC
Q 045151 3 VKARAPGKIIL----AGEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGS 77 (387)
Q Consensus 3 ~~~~APgkv~L----~GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~ 77 (387)
+++ |||||+| .|+|.| ||...++.++||+|.++++++ + .+++.... +++.
T Consensus 2 i~~-aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v~~~~-----~--~~~i~~~~----------~~~~------- 56 (275)
T 1uek_A 2 ERL-APAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEP-----V--SSGLHFQG----------PYGR------- 56 (275)
T ss_dssp EEE-EEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEE-----E--SSCEEEES----------TTGG-------
T ss_pred cee-ecCeEEEeeeecCcCCCCCceeeEEEEEcCCCCEEEEEE-----C--cEEEEEcC----------CCCC-------
Confidence 566 9999999 488888 778899999999999999975 1 22332221 0100
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHH
Q 045151 78 PFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAA 157 (387)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~A 157 (387)
.+++.++++.+ +. ......+++|+++++||.++|||||||+++|++.|
T Consensus 57 -------------~n~v~~a~~~~----------------~~---~~g~~~g~~i~i~~~IP~g~GLGSSsa~a~a~l~a 104 (275)
T 1uek_A 57 -------------ENLAYRAASLY----------------LE---AAGQPGGVRILLEKRIPEGAGLGGGSSDAAQVLLA 104 (275)
T ss_dssp -------------GSHHHHHHHHH----------------HH---HTTCCCEEEEEEECCSCSSSSSCHHHHHHHHHHHH
T ss_pred -------------ccHHHHHHHHH----------------HH---HhCCCCCEEEEEecCCCCcCcccHHHHHHHHHHHH
Confidence 12233222211 10 00123579999999999999999999999999999
Q ss_pred HHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CC-CcccccCCCCceEEEE
Q 045151 158 LLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SG-NMTCIKSNMPLKMLIT 235 (387)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~-~~~~l~~~~~~~~ll~ 235 (387)
++++++.+ + +++++|..+| .|++++++||++.+. .+ .+++++ +++++++++
T Consensus 105 l~~l~~~~-----------l------~l~~la~~~g---------~dv~~~~~Gg~~~~~g~g~~~~~l~-~~~~~~vl~ 157 (275)
T 1uek_A 105 LQALYPAE-----------V------DLFALARTLG---------ADVPFFLLGRGAEARGVGERLKPLA-LPPVPAVVF 157 (275)
T ss_dssp HHHHSCSC-----------C------CHHHHHHHHC---------TTHHHHHHCSEEEEETTTTEEEEEC-CCCEEEEEE
T ss_pred HHHHcCCC-----------h------HHHHHHHHhC---------CChHHHhcCCeEEEEccCceeEEcc-CCCcEEEEE
Confidence 99999875 4 3466776654 499999999987765 33 366777 678999999
Q ss_pred EeCCCCChHHHHHHHHHH-HhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCC
Q 045151 236 NTKVGRNTRALVAGVSER-SMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSH 314 (387)
Q Consensus 236 ~t~~~~~T~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~ 314 (387)
+|+.+.+|+++++.+... ....++ .. .+..++..... . +.|+..+..... .+
T Consensus 158 ~p~~~~sT~~~~~~~~~~~~~~~~~-~~-----------~~~~al~~~~~----------~--~~~n~l~~~~~~---~~ 210 (275)
T 1uek_A 158 FPGLRVPTPLVYRAVRPEDFGPDLP-VE-----------AILEALARGEE----------P--PYWNSLEGPAFR---LF 210 (275)
T ss_dssp ECCCCCCHHHHHHTCCGGGCCCCCC-HH-----------HHHHHHHHTCC----------C--SCCBTTHHHHHH---HC
T ss_pred eCCCCCchHHHHHhCchhhcccCCC-hH-----------HHHHHHHhccc----------c--ccccchHHHHHH---hC
Confidence 999999999876543211 001111 11 11122221100 0 011111111111 27
Q ss_pred HHHHHHHHHHhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecCCce
Q 045151 315 SSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGV 379 (387)
Q Consensus 315 p~l~~l~~~a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~G~ 379 (387)
|+++++++.+++.| ++++|||+| +|+++|+++ ++.++++.+++++.+ .+|.+++.+.|.
T Consensus 211 p~l~~l~~~~~~~Ga~ga~~SGsG--~~v~~l~~~---~~~~~~~~~~l~~~~-~~~~~~~~~g~~ 270 (275)
T 1uek_A 211 PELKEVRGRMRALGLRGVLMSGSG--SAFFGLAEG---PDHARRAAEALRAWG-RAWAGTLGGGDA 270 (275)
T ss_dssp THHHHHHHHHHHTTCEEEEECTTS--SCEEEECSS---HHHHHHHHHHHTTTS-EEEEEEECCC--
T ss_pred hHHHHHHHHHHhCCCCEEEEeccc--cCeEEEeCC---HHHHHHHHHHhhhcc-EEEEEEecCCCC
Confidence 99999999999999 899999999 799999987 345677888888877 999999887664
No 21
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.95 E-value=5e-27 Score=219.53 Aligned_cols=262 Identities=17% Similarity=0.204 Sum_probs=173.2
Q ss_pred CceEEEcCceEEE----Eeccce-eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccC
Q 045151 1 MEVKARAPGKIIL----AGEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHL 75 (387)
Q Consensus 1 ~~~~~~APgkv~L----~GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~ 75 (387)
|++.++|||||+| .|||.| ||+..++.++||+|.++.++++ +++.+++.... +.++.
T Consensus 1 ~~~~~~apaKinL~L~v~g~~~dGyh~l~sl~~ai~l~~~v~v~~~----~~~~i~i~~~~---------~~~~~----- 62 (283)
T 2ww4_A 1 MRTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELR----DDGDIRLLTPV---------EGVEH----- 62 (283)
T ss_dssp CEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEE----SSSCEEECSCB---------TTBCG-----
T ss_pred CCccccCceeEEeeeeccCCCCCCCcceEEEEEECCCCcEEEEEEC----CCCcEEEEeCC---------CCCCC-----
Confidence 7788899999999 799999 8888899999999999999874 33456654321 00000
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHh--h-hCccCeEEEEEecCCCCCCCChhHHHHH
Q 045151 76 GSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTS--I-IGFKPATVVVTSDLPLGAGLGSSAAFCV 152 (387)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~-~~~~~~~i~i~s~iP~g~GLGSSaA~~v 152 (387)
+ .|++.++++.+ ...+.. . ....+++|+++++||.++|||||||+++
T Consensus 63 ------------~--~nlv~~a~~~~----------------~~~~~~~~~~g~~~g~~i~i~~~IP~g~GLGsSsa~~~ 112 (283)
T 2ww4_A 63 ------------E--DNLIVRAARLL----------------MKTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAA 112 (283)
T ss_dssp ------------G--GSHHHHHHHHH----------------HHHHHHTTCSCTTCEEEEEEECCCC-CTTSCHHHHHHH
T ss_pred ------------c--ccHHHHHHHHH----------------HHHhhhhcccCCCCceEEEEEeCCCCCCCccHHHHHHH
Confidence 0 13343333211 110000 0 1135899999999999999999999999
Q ss_pred HHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-cccccCCCCc
Q 045151 153 SLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-MTCIKSNMPL 230 (387)
Q Consensus 153 a~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~~~l~~~~~~ 230 (387)
|++.|++.+++.+ +++ ++++++|..+| .|++++++||++... .++ ++++++ +++
T Consensus 113 a~l~al~~l~~~~-----------l~~---~~l~~la~~~e---------~dv~~~~~gg~~~~~g~g~~~~~l~~-~~~ 168 (283)
T 2ww4_A 113 TVLVALNHLWQCG-----------LSM---DELAEMGLTLG---------ADVPVFVRGHAAFAEGVGEILTPVDP-PEK 168 (283)
T ss_dssp HHHHHHHHHTTCC-----------CCH---HHHHHHHHTTC---------TTHHHHHHTBCEEEETTTTEEEECCC-CCC
T ss_pred HHHHHHHHhcCCC-----------cCH---HHHHHHHHHhC---------CCHHHhhcCCeEEEEecCccceEcCC-CCc
Confidence 9999999999976 654 56678887766 399999999987654 333 666765 478
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhc
Q 045151 231 KMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCM 310 (387)
Q Consensus 231 ~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~ 310 (387)
++++++|+.+.+|+++++... .. ..+.. ..+.. .++.... .|++. ...
T Consensus 169 ~~vl~~p~~~~sT~~~~~~~~--~~-~~~~~----~~l~~-------l~~~~~~------nd~~~----------~~~-- 216 (283)
T 2ww4_A 169 WYLVAHPGVSIPTPVIFKDPE--LP-RNTPK----RSIET-------LLKCEFS------NDCEV----------IAR-- 216 (283)
T ss_dssp EEEEECCSCCCCHHHHHTCTT--SC-CCCCC----CCHHH-------HHTSCCC------BTTHH----------HHH--
T ss_pred EEEEEeCCCCCchHHHHhccc--cc-ccchH----HHHHH-------HHhhhhc------CchHH----------HHH--
Confidence 999999999999998765411 10 00100 01111 1111000 22221 111
Q ss_pred CCCCHHHHHHHHHHhhcCCcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeee
Q 045151 311 GVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGI 374 (387)
Q Consensus 311 ~~s~p~l~~l~~~a~~~g~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~ 374 (387)
..+|+++++++.+++.| +++||||| +|+|+++++ ++.++++.+++++.... ++++.
T Consensus 217 -~~~p~l~~i~~~~~~~G-~a~~SGsG--~tvf~l~~~---~~~a~~~~~~l~~~~~~-~~~~~ 272 (283)
T 2ww4_A 217 -KRFREVDAVLSWLLEYA-PSRLTGTG--ACVFAEFDT---ESEARQVLEQAPEWLNG-FVAKG 272 (283)
T ss_dssp -HHCHHHHHHHHHHHTTS-CEEECTTS--SCEEEEESS---HHHHHHHHHHCCC-CCE-EEEEE
T ss_pred -hcChHHHHHHHHHHHcC-CceECCcc--cceEEEeCC---HHHHHHHHHHhhhhhhE-EEEec
Confidence 12899999999999999 99999998 899999986 34456677766543322 45543
No 22
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.95 E-value=6.3e-27 Score=217.68 Aligned_cols=248 Identities=15% Similarity=0.093 Sum_probs=171.2
Q ss_pred ceEEEcCceEEE----Eeccce-eeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCC
Q 045151 2 EVKARAPGKIIL----AGEHAV-VHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLG 76 (387)
Q Consensus 2 ~~~~~APgkv~L----~GEh~~-~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~ 76 (387)
|++++|||||+| .|+|.| ||+..++.++|++|.++ +++ +..+++....+ +
T Consensus 4 m~~~~aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v-~~~------~~~i~i~~~~~-----------~------- 58 (271)
T 2v8p_A 4 MIKVLSPAKINLGLWVLGRLPSGYHEILTLYQEIPFYDEI-YIR------EGVLRVETNIG-----------I------- 58 (271)
T ss_dssp CEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEE-EEE------ESSCEEEESSC-----------C-------
T ss_pred eEEEeecceEEeeEeecccCCCCCceEEEEEEEcCcccEE-EEe------CCeEEEEeCCC-----------C-------
Confidence 578999999999 799998 78889999999999999 874 12345543110 0
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHH
Q 045151 77 SPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTA 156 (387)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~ 156 (387)
.+|.+++.++++.+ .. ......+++|+++++||.++|||||||+++|++.
T Consensus 59 -----------~~~~nlv~~a~~~~----------------~~---~~g~~~g~~i~i~~~IP~g~GLGsSsa~a~a~l~ 108 (271)
T 2v8p_A 59 -----------PQEENLVYKGLREF----------------ER---ITGIEINYSIFIQKNIPPGAGLGGGSSNLAVVLK 108 (271)
T ss_dssp -----------CTTTCHHHHHHHHH----------------HH---HHCCCCCEEEEEECCSCTTSSSCHHHHHHHHHHH
T ss_pred -----------CCCchHHHHHHHHH----------------HH---HhCCCCCeEEEEEeCCCCCCCCchHHHHHHHHHH
Confidence 01223444333321 11 0011358999999999999999999999999999
Q ss_pred HHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEe-CCC-cccccCCCCceEEE
Q 045151 157 ALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFR-SGN-MTCIKSNMPLKMLI 234 (387)
Q Consensus 157 Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~-~~~-~~~l~~~~~~~~ll 234 (387)
|++++++.+ +++ ++++++|..+| .|++++++||++.+. .++ +++++.+.++++++
T Consensus 109 al~~l~~~~-----------l~~---~el~~la~~~e---------~dv~~~~~gg~~~~~g~g~~~~~l~~~~~~~~vl 165 (271)
T 2v8p_A 109 KVNELLGSP-----------LSE---EELRELVGSIS---------ADAPFFLLGKSAIGRGKGEVLEPVETEISGKITL 165 (271)
T ss_dssp HHHHHTTCC-----------SCH---HHHHHHHHHHC---------TTTGGGGTCSEEEEETTTTEEEECCCCCCSEEEE
T ss_pred HHHHhcCCC-----------cCH---HHHHHHHHHhC---------CCHHHHhcCCeEEEEEcCCEEEEccCCCCcEEEE
Confidence 999999976 654 56678888776 399999999987765 343 66777433899999
Q ss_pred EEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHH-HHHHHHhhcCCC
Q 045151 235 TNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELME-MNQGLLQCMGVS 313 (387)
Q Consensus 235 ~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~-~~~~~l~~~~~s 313 (387)
++|+.+.+|.++++.+.... ... . ..+ .++.. +|++.++++|+ .-|... ...
T Consensus 166 ~~p~~~~sT~~~~~~~~~~~--~~~-~-----------~~~-~al~~---------~d~~~~~~~~~n~l~~~~---~~~ 218 (271)
T 2v8p_A 166 VIPQVSSSTGRVYSSLREEH--FVT-P-----------EYA-EEKIQ---------RIISGEVEEIENVLGDIA---REL 218 (271)
T ss_dssp EECSSCCCHHHHHHTCCTTS--CCC-H-----------HHH-HHHHH---------HHHTTCGGGCCBHHHHHH---HHH
T ss_pred EeCCCCCCHHHHHHhccccc--Ccc-h-----------hHH-HHhhc---------CCHHHHHHHHhCChhhHh---HHh
Confidence 99999999988755322110 010 0 111 33332 56666666552 112221 124
Q ss_pred CHHHHHHHHHHhhcCCccc-ccCCCCCCeEEEEeCCCCCHHHHHHHHH
Q 045151 314 HSSIETVLRTTLKFKLASK-LTGAGGGGCALTLLPTLLSATVVEKVTT 360 (387)
Q Consensus 314 ~p~l~~l~~~a~~~g~gak-lsGaG~Gg~v~al~~~~~~~~~~~~i~~ 360 (387)
+|+++++++.+++.|. ++ |||+| +|+++|++++ +.++++.+
T Consensus 219 ~p~l~~~~~~~~~~Ga-a~~mSGsG--~~v~~l~~~~---~~a~~~~~ 260 (271)
T 2v8p_A 219 YPEINEVYRFVEYLGF-KPFVSGSG--STVYFFGGAS---EELKKAAK 260 (271)
T ss_dssp CHHHHHHHHHHHHTTC-CCEECTTS--SCEEESSCCC---HHHHHHHH
T ss_pred ChHHHHHHHHHHhCCC-ccCccccC--cCeEEEeCCH---HHHHHHHh
Confidence 8999999999998887 99 99998 8999999874 33444544
No 23
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.94 E-value=1.1e-24 Score=207.03 Aligned_cols=285 Identities=12% Similarity=0.119 Sum_probs=182.1
Q ss_pred eEEEcCceEEEEeccceeeCCeee------Eeee-ccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccC
Q 045151 3 VKARAPGKIILAGEHAVVHGSTAV------AACI-DLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHL 75 (387)
Q Consensus 3 ~~~~APgkv~L~GEh~~~~g~~~l------~~ai-~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~ 75 (387)
..++||+++.|+|+|.++.++..+ .+++ ++|.++.++.. +.+++ ..++.++...
T Consensus 9 ~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~~l~~~~~v~~~------------~~~~~-~~~~~~~g~~------ 69 (317)
T 2gs8_A 9 ITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLENMFTTTSVSFL------------PDTAT-SDQFYINGIL------ 69 (317)
T ss_dssp EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEEEEEEEC------------CTTCC-SCEEEETTEE------
T ss_pred EEEEecCcEEEEeeeeeccCCcccCCCCceEEEeecccceEEEEEE------------cCCCC-eEEEEECCCc------
Confidence 679999999999999999876654 4455 34555555430 11110 0111111100
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHH
Q 045151 76 GSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLT 155 (387)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~ 155 (387)
...+|.++++.+++.+.. ... .+++|+++++||.++|||||||+++|++
T Consensus 70 ----------~~~~~~n~v~~~~~~~~~--------------------~~~-~g~~I~i~~~IP~~~GLGSSaA~~vA~~ 118 (317)
T 2gs8_A 70 ----------QNDEEHTKISAIIDQFRQ--------------------PGQ-AFVKMETQNNMPTAAGLSSSSSGLSALV 118 (317)
T ss_dssp ----------CCHHHHHHHHHHHTTTCC--------------------TTC-CCEEEEEECCSCGGGCCCHHHHHHHHHH
T ss_pred ----------cccchHHHHHHHHHHHHH--------------------hcC-CCeEEEEeCCCCCCCchHHHHHHHHHHH
Confidence 113677888877765431 012 6899999999999999999999999999
Q ss_pred HHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeC-C-CcccccCCCCceEE
Q 045151 156 AALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRS-G-NMTCIKSNMPLKML 233 (387)
Q Consensus 156 ~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~-~-~~~~l~~~~~~~~l 233 (387)
.|++.+++++ +++ ++++++|..+| | +++.+++||++.+.. + +....+++.+++++
T Consensus 119 ~al~~l~g~~-----------ls~---~el~~la~~~~--------G-~~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~ 175 (317)
T 2gs8_A 119 KACDQLFDTQ-----------LDQ---KALAQKAKFAS--------G-SSSRSFFGPVAAWDKDSGAIYKVETDLKMAMI 175 (317)
T ss_dssp HHHHHHHTCC-----------CCH---HHHHHHHHHHH--------G-GGGGGGSCSEEEECTTTCCEEECCCCCCEEEE
T ss_pred HHHHHHhCCC-----------CCH---HHHHHHHHhhc--------c-hhHhhhcCChheEeeCCCceeEEEccccccEE
Confidence 9999999986 655 55677776553 2 445689999877653 2 23334444567754
Q ss_pred EE--EeCC-CCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhh-
Q 045151 234 IT--NTKV-GRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQC- 309 (387)
Q Consensus 234 l~--~t~~-~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~- 309 (387)
++ +++. ..+|.+...... ...+. +++...........+..+|.. +|++.|+++|+++|+.|+.
T Consensus 176 v~i~~~~~~~~~tt~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~al~~---------~d~~~lg~~~~~~~~~l~~~ 242 (317)
T 2gs8_A 176 MLVLNAAKKPISSREGMKLCR---DTSTT-FDQWVEQSAIDYQHMLTYLKT---------NNFEKVGQLTEANALAMHAT 242 (317)
T ss_dssp EEECCCSSCCSCHHHHHHHHH---HHCTT-HHHHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCcCcccHHHHHHHh---hcCHH-HHHHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHH
Confidence 43 5544 335554433321 11221 122223334445566777776 7999999999988777763
Q ss_pred cC-------CCCHHHHHHHHH---HhhcC-CcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecCCc
Q 045151 310 MG-------VSHSSIETVLRT---TLKFK-LASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTG 378 (387)
Q Consensus 310 ~~-------~s~p~l~~l~~~---a~~~g-~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~G 378 (387)
+. ...|.+.++++. +++.| .++.+|||| ||+++|++++ ..+++.+++++ ..+++++++. +|
T Consensus 243 ~~~~~p~~~~l~~~~~~i~~~~~~~~~~G~~~~~~SGaG--ptv~~l~~~~----~~~~v~~~l~~-~~~~~~~~~~-~~ 314 (317)
T 2gs8_A 243 TKTANPPFSYLTKESYQAMEAVKELRQEGFACYFTMDAG--PNVKVLCLEK----DLAQLAERLGK-NYRIIVSKTK-DL 314 (317)
T ss_dssp HTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS--SCEEEEEEGG----GHHHHHHHHHT-TSEEEEEEBC-CC
T ss_pred hhccCCCceeEhHHHHHHHHHHHHHHhcCCcEEEEecCC--CeEEEEEcHH----HHHHHHHHHhc-CCeEEEEecC-CC
Confidence 22 234556666654 34478 788999988 8999999864 23567777766 4588888876 57
Q ss_pred eEE
Q 045151 379 VEV 381 (387)
Q Consensus 379 ~~v 381 (387)
++|
T Consensus 315 ~~~ 317 (317)
T 2gs8_A 315 PDV 317 (317)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 24
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.85 E-value=2.2e-19 Score=176.25 Aligned_cols=199 Identities=13% Similarity=0.098 Sum_probs=129.3
Q ss_pred ccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccce
Q 045151 127 FKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNT 206 (387)
Q Consensus 127 ~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~ 206 (387)
..+++|.++++||.++|||||||+++|++.|++++++++ +++ ++|+++|...+ | +++
T Consensus 121 ~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~-----------Ls~---~eLa~lA~~g~--------G-s~~ 177 (416)
T 1fi4_A 121 QWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLP-----------QST---SEISRIARKGS--------G-SAC 177 (416)
T ss_dssp GSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCC-----------SCH---HHHHHHHHHHH--------G-GGG
T ss_pred CCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCC-----------CCH---HHHHHHHhccC--------C-chh
Confidence 357999999999999999999999999999999999986 655 45677776543 2 566
Q ss_pred eEeecceEEEeCCC--------cccccC---CCCceEEE--EEeCCC-CChHHHHHHHHHHHhhChhHHHHHHHH-HHHH
Q 045151 207 VSTYGNIIKFRSGN--------MTCIKS---NMPLKMLI--TNTKVG-RNTRALVAGVSERSMRHPDAMSSVFNA-VDSI 271 (387)
Q Consensus 207 ~~~~Gg~i~~~~~~--------~~~l~~---~~~~~~ll--~~t~~~-~~T~~~~~~~~~~~~~~~~~~~~~~~~-i~~i 271 (387)
+|++||++.+..+. ..+++. .+++++++ ++++.+ .+|.+..... +...+. ++..++. ....
T Consensus 178 ~sl~GG~v~~~~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~~~sst~~~~~~---~~~~~~-~~~~~~~i~~~~ 253 (416)
T 1fi4_A 178 RSLFGGYVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLT---VATSEL-FKERIEHVVPKR 253 (416)
T ss_dssp GGGSSSEEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHH---HHHCSH-HHHHHHTHHHHH
T ss_pred eEeeCCcEEEecCCcCCCCCceeEEecCccCCcccEEEEEEECCCCCCcCCHHHHHHH---hhcCHh-HHHHHHHHHHHH
Confidence 78999997664321 233432 24677433 444322 3444333322 111221 1222222 2233
Q ss_pred HHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhh--------cCCCCHHHHHHHHHHhh----cC--CcccccCCC
Q 045151 272 SKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQC--------MGVSHSSIETVLRTTLK----FK--LASKLTGAG 337 (387)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~--------~~~s~p~l~~l~~~a~~----~g--~gaklsGaG 337 (387)
...+..++.. +|++.|+++|..+++.+++ .....|...++++.+.+ .| .++.+||||
T Consensus 254 ~~~l~~AL~~---------gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG 324 (416)
T 1fi4_A 254 FEVMRKAIVE---------KDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG 324 (416)
T ss_dssp HHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS
T ss_pred HHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 4456677776 7999999999877666652 12345677777766544 26 456799988
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHH
Q 045151 338 GGGCALTLLPTLLSATVVEKVTTELE 363 (387)
Q Consensus 338 ~Gg~v~al~~~~~~~~~~~~i~~~~~ 363 (387)
+++++|++++..+++.+.+.+.|.
T Consensus 325 --Ptv~al~~~~~~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 325 --PNAVLYYLAENESKLFAFIYKLFG 348 (416)
T ss_dssp --SCEEEEEEGGGHHHHHHHHHHHHT
T ss_pred --CcEEEEECHHHHHHHHHHHHHhcc
Confidence 899999987555556666776665
No 25
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.79 E-value=1.3e-17 Score=162.04 Aligned_cols=195 Identities=16% Similarity=0.205 Sum_probs=122.9
Q ss_pred cCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCccccee
Q 045151 128 KPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTV 207 (387)
Q Consensus 128 ~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~ 207 (387)
.+++|+++++||.++|||||||.++|++.|+++++++ . .++ +++|...+ | |+++
T Consensus 96 ~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl-------------~-~eL---~~lA~~g~--------G-sva~ 149 (380)
T 2hke_A 96 KKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKS-------------T-TNV---SMLARLGS--------G-SACR 149 (380)
T ss_dssp CEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTC-------------S-SCH---HHHHHHHC--------G-GGGG
T ss_pred CCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCC-------------H-HHH---HHHHhhcC--------c-ceee
Confidence 5789999999999999999999999999999999985 2 344 55554332 2 6778
Q ss_pred EeecceEEEeCC------C--cccccCC---CCceEEEE--EeC-CCCChHHHHHHHHHHHhhChhHHHHHHHH-HHHHH
Q 045151 208 STYGNIIKFRSG------N--MTCIKSN---MPLKMLIT--NTK-VGRNTRALVAGVSERSMRHPDAMSSVFNA-VDSIS 272 (387)
Q Consensus 208 ~~~Gg~i~~~~~------~--~~~l~~~---~~~~~ll~--~t~-~~~~T~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~ 272 (387)
|+|||++.+..+ + ..+++.+ ++++++++ +++ ...+|.+....+. ...+. ++..++. .....
T Consensus 150 s~~GG~v~~~~g~~~~~~~~~~~~l~~~~~~p~l~~~vlv~~~~~~~~sst~~~r~~~---~~~~~-~~~~~~~~~~~~~ 225 (380)
T 2hke_A 150 SAFGGFVIWNKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGMQQSL---KTSPL-MKKRISETVPERM 225 (380)
T ss_dssp GGSSSEEEEECCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCHHHHHHHHH---HHCTT-HHHHHHTHHHHHH
T ss_pred ehhCCeEEEecCCCCCCCcceEEeccCcccCCcceEEEEEecCCCCCCCCHHHHHHHH---hcChh-HHHHHHHHHHHHH
Confidence 999999766532 1 2344332 45664444 322 2334443333221 11221 2222332 22333
Q ss_pred HHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhh--------cCCCCHHHHHHHHHHhhc----C--CcccccCCCC
Q 045151 273 KELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQC--------MGVSHSSIETVLRTTLKF----K--LASKLTGAGG 338 (387)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~--------~~~s~p~l~~l~~~a~~~----g--~gaklsGaG~ 338 (387)
..+..++.. +|++.|+++|..+++.++. .....|...++++.+.+. | .++.+||||
T Consensus 226 ~~l~~Al~~---------~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaG- 295 (380)
T 2hke_A 226 KIASRAIKA---------RDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAG- 295 (380)
T ss_dssp HHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS-
T ss_pred HHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCC-
Confidence 455666665 7899999999765555442 223567778888776554 6 457899888
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Q 045151 339 GGCALTLLPTLLSATVVEKVTTELE 363 (387)
Q Consensus 339 Gg~v~al~~~~~~~~~~~~i~~~~~ 363 (387)
+++++|++++..++..+.+.+.|.
T Consensus 296 -Ptv~~l~~~~~~~~v~~~l~~~~~ 319 (380)
T 2hke_A 296 -ANCFLFVLKEDLPEAVAMLMEHFP 319 (380)
T ss_dssp -SCEEEEEEGGGHHHHHHHHHHHSC
T ss_pred -CcEEEEECHHHHHHHHHHHHHhcc
Confidence 899999987544444455555543
No 26
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.78 E-value=7.3e-18 Score=158.79 Aligned_cols=197 Identities=15% Similarity=0.056 Sum_probs=132.7
Q ss_pred ccCeEEEEEecCCCCCCCChhHHHHHHHH----HHHHHhcCCccccccCCCcccc-CcCcHHHHHHHHHhhhhhHhcCCC
Q 045151 127 FKPATVVVTSDLPLGAGLGSSAAFCVSLT----AALLGSLNSVHLDKNHQGWLTY-GESDLDLLNKWAFEGEKIIHGKPS 201 (387)
Q Consensus 127 ~~~~~i~i~s~iP~g~GLGSSaA~~va~~----~Al~~~~~~~~~~~~~~~~~~l-~~~~l~~i~~~a~~~E~~~~g~~s 201 (387)
..+++|.++++||.++|||||||.++|++ .|++++++++ + ++ +++.++|..+ +
T Consensus 90 ~~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~-----------l~s~---~eL~~lA~~g--------s 147 (323)
T 3lto_A 90 VGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKP-----------LPSI---DEQAQLSRLG--------S 147 (323)
T ss_dssp CCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCC-----------CCCH---HHHHHHHHTT--------C
T ss_pred CCCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCC-----------CCCH---HHHHHHHHHh--------C
Confidence 45899999999999999999999999999 9999999986 6 65 4556666543 2
Q ss_pred cccceeEeecceEEEeCCCccccc-CCCCceEEEEE-e--CCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHH
Q 045151 202 GLDNTVSTYGNIIKFRSGNMTCIK-SNMPLKMLITN-T--KVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELST 277 (387)
Q Consensus 202 G~D~~~~~~Gg~i~~~~~~~~~l~-~~~~~~~ll~~-t--~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 277 (387)
| +++.|+|||++.+..+..+++. ..+++.++++. + ..+.+|.+.++.+ +..+- ++..++........+..
T Consensus 148 G-saa~si~GG~v~~~~g~~~~l~~~~~~l~~~v~vi~~~~~~vsT~~~~~~l----~~~~~-~~~~~~~~~~~~~~l~~ 221 (323)
T 3lto_A 148 G-SSCRSFYAPWALWTGDKVSAIDLPYKDLLHQVIVISSQEKEIPSRVAHKLV----KTSPF-YETRSERAEANLKLLLN 221 (323)
T ss_dssp G-GGGGGGSCSEEEEETTEEEECCCSCCSCEEEEEECCCCTTCCCHHHHHHHG----GGSTT-TTTHHHHHHHHHHHHHH
T ss_pred C-CcchhhhCCEEEEecCcEEEccCCCCCCeEEEEEECCCCCCCCCHHHHhhc----ccChh-HHHHHHHhHHHHHHHHH
Confidence 3 5678999999877666434442 23566664433 2 3346787765542 22221 12223333334456778
Q ss_pred HHcCCCCCCCcchHHHHHHHHHHHHHHHHHhh--------cCCCCHHHHHHHHHHhh----cC-CcccccCCCCCCeEEE
Q 045151 278 IIESPTPDDLSITEKEERLEELMEMNQGLLQC--------MGVSHSSIETVLRTTLK----FK-LASKLTGAGGGGCALT 344 (387)
Q Consensus 278 ~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~--------~~~s~p~l~~l~~~a~~----~g-~gaklsGaG~Gg~v~a 344 (387)
+|.. +|++.|++++..+.+.|.. .....|...++++.+.+ .| +++.++||| +++++
T Consensus 222 AL~~---------gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAG--Pnv~~ 290 (323)
T 3lto_A 222 AFEN---------KDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAG--PNVHL 290 (323)
T ss_dssp HHHT---------TCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSS--SCEEE
T ss_pred HHHc---------CCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCC--CCeEE
Confidence 8886 8999999987655444442 11246777777766654 57 889999999 88999
Q ss_pred EeCCCCCHHHHHHHHHHH
Q 045151 345 LLPTLLSATVVEKVTTEL 362 (387)
Q Consensus 345 l~~~~~~~~~~~~i~~~~ 362 (387)
+++++..+++.+.+.+.|
T Consensus 291 l~~~~~~~~v~~~l~~~~ 308 (323)
T 3lto_A 291 LYRSDQTDLARQFKSDHL 308 (323)
T ss_dssp EECGGGHHHHHHHHHHHT
T ss_pred EEecccHHHHHHHHHHHh
Confidence 998755444555555444
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.70 E-value=2.3e-16 Score=151.79 Aligned_cols=194 Identities=20% Similarity=0.231 Sum_probs=126.6
Q ss_pred cCeEEEEEecCCCCCCCChhHHHHHHHHHHHHHhcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCccccee
Q 045151 128 KPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTV 207 (387)
Q Consensus 128 ~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~ 207 (387)
.+++|.++++||.++|||||||.++|++.|+++++++. .++ .++|..+ +| +.+.
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l~--------------~el---~~lA~~~--------sG-s~~~ 175 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGVE--------------GDL---SEVARRG--------SG-SACR 175 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTCC--------------SCC---HHHHHHH--------CG-GGGG
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCCh--------------HHH---HHHHHHh--------CC-Ccch
Confidence 47899999999999999999999999999999999853 244 4555433 23 5677
Q ss_pred EeecceEEEeCC------C--cccccCC---CCceEEEEEeCCCC----ChHHHHHHHHHHHhhChhHHHHHHHH-HHHH
Q 045151 208 STYGNIIKFRSG------N--MTCIKSN---MPLKMLITNTKVGR----NTRALVAGVSERSMRHPDAMSSVFNA-VDSI 271 (387)
Q Consensus 208 ~~~Gg~i~~~~~------~--~~~l~~~---~~~~~ll~~t~~~~----~T~~~~~~~~~~~~~~~~~~~~~~~~-i~~i 271 (387)
|+|||++.+..+ + ..+++.+ ++++++++.+.... +|..+... ....+ .++..+++ ....
T Consensus 176 s~~GG~v~w~~~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsST~~mr~~----l~ts~-~~~~~v~~~~~~~ 250 (414)
T 3f0n_A 176 SLYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTS----VETST-LLKFRAESVVPER 250 (414)
T ss_dssp GGSSSEEEECCCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHHH----HHHCH-HHHHHHHHTHHHH
T ss_pred HhhCCEEEEEeccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCchHHHHhh----cccCc-cHHHHHHHHHHHH
Confidence 999999887543 1 1334321 56887776643332 34444221 11222 23334444 3344
Q ss_pred HHHHHHHHcCCCCCCCcchHHHHHHHHHHHHH----HHHHhh----cCCCCHHHHHHHHHHhhc-----C-CcccccCCC
Q 045151 272 SKELSTIIESPTPDDLSITEKEERLEELMEMN----QGLLQC----MGVSHSSIETVLRTTLKF-----K-LASKLTGAG 337 (387)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~----~~~l~~----~~~s~p~l~~l~~~a~~~-----g-~gaklsGaG 337 (387)
...+..+|.. +|++.|++++..+ |..++. +-...|....+++.+.+. | .++.++|||
T Consensus 251 ~~~l~~AL~~---------gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAG 321 (414)
T 3f0n_A 251 MKEMTRCIQE---------QDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAG 321 (414)
T ss_dssp HHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS
T ss_pred HHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 4567778876 8999999987643 443331 123477777777766653 6 789999999
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHH
Q 045151 338 GGGCALTLLPTLLSATVVEKVTTELE 363 (387)
Q Consensus 338 ~Gg~v~al~~~~~~~~~~~~i~~~~~ 363 (387)
++++++++++..+++.+.+.+.|.
T Consensus 322 --Pnv~vl~~~~~~~~v~~~l~~~f~ 345 (414)
T 3f0n_A 322 --PNAVIFTLEDTVAEFVAAVRHSFP 345 (414)
T ss_dssp --SCEEEEEEHHHHHHHHHHHHHHSC
T ss_pred --CCEEEEEecccHHHHHHHHHHhcC
Confidence 889999887544455555554443
No 28
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=37.32 E-value=1.7e+02 Score=24.06 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 045151 264 VFNAVDSISKELSTIIES 281 (387)
Q Consensus 264 ~~~~i~~i~~~~~~~l~~ 281 (387)
+.+++.+.-.++...+..
T Consensus 90 Lr~ql~akr~EL~aL~~a 107 (175)
T 3lay_A 90 LRQQLISKRYEYNALLTA 107 (175)
T ss_dssp HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344444444454444443
No 29
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=24.24 E-value=52 Score=25.23 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHhhcC-CcccccCCCCCC-----eEEEEeCCCCCHHHHHHHHHHHH
Q 045151 314 HSSIETVLRTTLKFK-LASKLTGAGGGG-----CALTLLPTLLSATVVEKVTTELE 363 (387)
Q Consensus 314 ~p~l~~l~~~a~~~g-~gaklsGaG~Gg-----~v~al~~~~~~~~~~~~i~~~~~ 363 (387)
+..++++.+++.+.| .+.+++-.|+++ .+...++++.+++.++.|.+.-+
T Consensus 15 p~kld~V~~AL~~~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~ 70 (114)
T 3m05_A 15 DKDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASH 70 (114)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcC
Confidence 556888899888888 677776444322 34455677667777776666543
No 30
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=24.19 E-value=66 Score=24.72 Aligned_cols=62 Identities=8% Similarity=0.184 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHhhcC-Ccccc---cCCCC---------CC--eEEEEeCCCCCHHHHHHHHHHHHH-CCceEEEeee
Q 045151 313 SHSSIETVLRTTLKFK-LASKL---TGAGG---------GG--CALTLLPTLLSATVVEKVTTELET-CGFQCLIAGI 374 (387)
Q Consensus 313 s~p~l~~l~~~a~~~g-~gakl---sGaG~---------Gg--~v~al~~~~~~~~~~~~i~~~~~~-~g~~~~~~~~ 374 (387)
..+.++++++++.+.| -|.-+ .|-|- |+ -+..+++++.++..++.|.+.... ....+|+..+
T Consensus 33 r~~k~e~V~~aL~~~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~tg~~GkIFV~~V 110 (119)
T 2cz4_A 33 ESLLEKRLVEEVKRLGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFPHYAVIAYVENV 110 (119)
T ss_dssp EGGGHHHHHHHHHHTTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTTTTSCCEEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhcCCCCEEEEEEEe
Confidence 3677888888888876 34333 33332 12 344556665555555666543322 2246666544
No 31
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=21.89 E-value=85 Score=23.72 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHhhcC-Ccccc---cCCCC--CC-----------------eEEEEeCCCCCHHHHHHHHHHHHHC---Cc
Q 045151 314 HSSIETVLRTTLKFK-LASKL---TGAGG--GG-----------------CALTLLPTLLSATVVEKVTTELETC---GF 367 (387)
Q Consensus 314 ~p~l~~l~~~a~~~g-~gakl---sGaG~--Gg-----------------~v~al~~~~~~~~~~~~i~~~~~~~---g~ 367 (387)
+..++.+++++.+.| .|..+ .|-|- |. -+..+++++.+++..+.+.+..+.. +.
T Consensus 10 ~~~~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~~GdG 89 (116)
T 1vfj_A 10 PEKLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAARTGEVGDG 89 (116)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHCCSSTTCC
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCE
Confidence 456778888888876 33333 23332 22 5778888877777777777766431 24
Q ss_pred eEEEeeec
Q 045151 368 QCLIAGIG 375 (387)
Q Consensus 368 ~~~~~~~~ 375 (387)
.+|++.+.
T Consensus 90 kiFV~pVe 97 (116)
T 1vfj_A 90 KIFVLPVE 97 (116)
T ss_dssp EEEEEECS
T ss_pred EEEEEEhH
Confidence 67776654
Done!