RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 045151
(387 letters)
>gnl|CDD|215363 PLN02677, PLN02677, mevalonate kinase.
Length = 387
Score = 676 bits (1746), Expect = 0.0
Identities = 297/387 (76%), Positives = 342/387 (88%)
Query: 1 MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELN 60
MEVKARAPGKIILAGEHAVVHGSTAVAA IDLYTYVSLRFP +++DDTLKL LKD+ L
Sbjct: 1 MEVKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQLKDLGLE 60
Query: 61 FSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWL 120
FSW + RIK L LG+P PSTPT+CS E +KSIA LV+EQNIPEAKI LSSG +AFLWL
Sbjct: 61 FSWPLARIKEALPDLGTPCPSTPTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWL 120
Query: 121 YTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGES 180
YTSI+GF PATVVVTS+LPLG+GLGSSAAFCV+L+AALL + +S+ + GW + E+
Sbjct: 121 YTSILGFNPATVVVTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDET 180
Query: 181 DLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVG 240
DL+L+NKWAFEGEKIIHGKPSG+DNTVSTYGN+IKF+SG +T ++SNMPLKMLITNT+VG
Sbjct: 181 DLELVNKWAFEGEKIIHGKPSGIDNTVSTYGNMIKFKSGELTRLQSNMPLKMLITNTRVG 240
Query: 241 RNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELM 300
RNT+ALVAGVSER++RHPDAM SVFNAVDSIS+EL+TII+SP D+LSITEKEE+L+ELM
Sbjct: 241 RNTKALVAGVSERALRHPDAMKSVFNAVDSISEELATIIQSPAEDELSITEKEEKLKELM 300
Query: 301 EMNQGLLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTT 360
EMNQGLLQCMGVSHSSIETVLRTTLK+KL SKLTGAGGGGC LTLLPTLLS TVV+KV
Sbjct: 301 EMNQGLLQCMGVSHSSIETVLRTTLKYKLVSKLTGAGGGGCVLTLLPTLLSGTVVDKVIA 360
Query: 361 ELETCGFQCLIAGIGGTGVEVCFGGLS 387
ELE+ GFQC AGIGG GV++C+GG S
Sbjct: 361 ELESSGFQCFTAGIGGNGVQICYGGCS 387
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase. This model represents
mevalonate kinase, the third step in the mevalonate
pathway of isopentanyl pyrophosphate (IPP) biosynthesis.
IPP is a common intermediate for a number of pathways
including cholesterol biosynthesis. This model covers
enzymes from eukaryotes, archaea and bacteria. The
related enzyme from the same pathway, phosphmevalonate
kinase, serves as an outgroup for this clade. Paracoccus
exhibits two genes within the
phosphomevalonate/mevalonate kinase family, one of which
falls between trusted and noise cutoffs of this model.
The degree of divergence is high, but if the trees
created from this model are correct, the proper names of
these genes have been swapped [Central intermediary
metabolism, Other].
Length = 274
Score = 231 bits (591), Expect = 4e-74
Identities = 103/341 (30%), Positives = 147/341 (43%), Gaps = 69/341 (20%)
Query: 7 APGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVT 66
APGKIIL GEHAVV+G A+AA I L T V++ SD
Sbjct: 1 APGKIILFGEHAVVYGEPAIAAPIPLRTTVTVIESSDGFS-------------------- 40
Query: 67 RIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIG 126
I++ L P GL S L ++ +
Sbjct: 41 FIESDLGRGS--LDDAPDELD---------------------GLVSYVAEALSYFSELN- 76
Query: 127 FKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLN 186
P + + S++P G GLGSSAA V+L AL + + + L
Sbjct: 77 PPPLEITIDSEIPPGRGLGSSAAVAVALIRAL-----ADYFGSEL---------SKEELA 122
Query: 187 KWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTC-IKSNMPLKMLITNTKVGRNTRA 245
+ A E EKI HGKPSG+D ST G + F G ++ +I +T V +T+
Sbjct: 123 ELANEAEKIAHGKPSGIDTATSTSGGPVYFEKGEGEFTKLISLDGYFVIADTGVSGSTKE 182
Query: 246 LVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQG 305
VA V + R P+ + S+ +A+ ++ E +E E L ELM +NQG
Sbjct: 183 AVARVRQLLERFPELIDSIMDAIGELTLEAKAALE---------DGDVESLGELMNINQG 233
Query: 306 LLQCMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTL 345
LL+ +GVSH ++ ++ K L +KLTGAGGGGC + L
Sbjct: 234 LLKALGVSHPKLDQLVEIARKAGALGAKLTGAGGGGCMIAL 274
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 195 bits (498), Expect = 8e-60
Identities = 100/368 (27%), Positives = 160/368 (43%), Gaps = 82/368 (22%)
Query: 3 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSD----SDDDDTLKLVLKDME 58
+ APGK+IL GEHAVV+G A+AA IDL V++ + D LK
Sbjct: 1 ISVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISESDSNKIVIESSD-----LKSST 55
Query: 59 LNFSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFL 118
L I+A + +
Sbjct: 56 LERDEDEGYIQAAVRLASELLNQSSL---------------------------------- 81
Query: 119 WLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYG 178
KP ++ + S++P+GAGLGSSAA ++ A++ +L++
Sbjct: 82 ---------KPFSLEIDSEIPIGAGLGSSAA----VSVAVIKALSAYF----------GV 118
Query: 179 ESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLK--MLITN 236
E + L K A + E I+ GK SG+D TYG ++ F+ G K + L ++I +
Sbjct: 119 ELSPEELAKLANKVELIVQGKASGIDIATITYGGLVAFKKGF-DFEKLEIELLGTLVIGD 177
Query: 237 TKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERL 296
T V +T+ LVAGV++ P+ + + +A+ + +E ++ T E L
Sbjct: 178 TGVPGSTKELVAGVAKLLEEEPEVIDPILDAIGELVQEAEAALQ---------TGDFEEL 228
Query: 297 EELMEMNQGLLQCMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTLLSATVV 355
ELM +NQGLL+ +GVS ++ ++ L +KLTGAGGGGC + L + +
Sbjct: 229 GELMNINQGLLKALGVSTPELDELVEAARSLGALGAKLTGAGGGGCIIALAK---NEEIA 285
Query: 356 EKVTTELE 363
E ++ LE
Sbjct: 286 ETLSNRLE 293
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional.
Length = 302
Score = 100 bits (250), Expect = 5e-24
Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 27/216 (12%)
Query: 131 TVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAF 190
TV +TS +P+G+GLGSSAA +T A +G+LN L L+ + K
Sbjct: 77 TVSITSQIPVGSGLGSSAA----VTVATIGALNR----------LLGLGLSLEEIAKLGH 122
Query: 191 EGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVGRNTRALVAGV 250
+ E ++ G S D VST G + +++ T +T+ LVA V
Sbjct: 123 KVELLVQGAASPTDTYVSTMGGFVTIPDRKKL---PFPECGIVVGYTGSSGSTKELVANV 179
Query: 251 SERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCM 310
+ +P+ + + +++ IS+ ++L ++ L ELM +NQGLL +
Sbjct: 180 RKLKEEYPELIEPILSSIGKISE---------KGEELILSGDYVSLGELMNINQGLLDAL 230
Query: 311 GVSHSSI-ETVLRTTLKFKLASKLTGAGGGGCALTL 345
GVS + E + L +K+TGAGGGGC + L
Sbjct: 231 GVSTKELSELIYAARTAGALGAKITGAGGGGCMVAL 266
Score = 58.1 bits (141), Expect = 2e-09
Identities = 25/42 (59%), Positives = 27/42 (64%)
Query: 3 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDS 44
V APGKI L GEHAVV+G A+A IDL TYV F DS
Sbjct: 2 VLCSAPGKIYLFGEHAVVYGKPAIACAIDLRTYVRAEFNDDS 43
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 82.2 bits (203), Expect = 2e-17
Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 32/211 (15%)
Query: 142 AGLGSSAAFCVSLTAAL--LGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGK 199
+G+G+SA+ VSL+ AL L LN LT E +N AF GE HG
Sbjct: 107 SGIGASASDVVSLSRALSELYQLN-----------LTEEE-----VNLSAFVGEGGYHGT 150
Query: 200 PSGLDNTVSTYGNIIKFRSGN----MTCIKSNMPLKMLITNTKVGRNTRALVAGVSERSM 255
PSG DNT +TYG +I +R N I PL +++ +T + +T +V V +
Sbjct: 151 PSGADNTAATYGGLISYRRVNGKSVFKRIAFQQPLYLVVCSTGITASTTKVVGDVRKLKE 210
Query: 256 RHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHS 315
P + + ++ E ++ +L R+ ELM N L Q + VS
Sbjct: 211 NQPTWFNRLLENYNACVSEAKEALQK---GNL------FRVGELMNANHDLCQKLTVSCR 261
Query: 316 SIETVLRTTLKF-KLASKLTGAGGGGCALTL 345
++++++T + L +K++G G GG + L
Sbjct: 262 ELDSIVQTCRTYGALGAKMSGTGRGGLVVAL 292
Score = 38.7 bits (90), Expect = 0.003
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 9 GKIILAGEHAVVHGSTAVAACIDLYT 34
GK+IL GEH VV+G+ A+ A ID YT
Sbjct: 17 GKVILFGEHFVVYGAEAIVAGIDEYT 42
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 82.4 bits (204), Expect = 3e-17
Identities = 92/406 (22%), Positives = 138/406 (33%), Gaps = 102/406 (25%)
Query: 1 MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELN 60
V A APG++ L GEH +G + I+ TYV++ DD ++L +
Sbjct: 22 PTVTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVA----KRDDGKVRLYSANFG-- 75
Query: 61 FSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAK---IGLSSGATAF 117
L E G
Sbjct: 76 ----NAGDIFFL--------------------------LLDIAKEKIDDWANYVKGVIKA 105
Query: 118 LWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTY 177
L F +V++ ++P+GAGL SSAA V A L L ++ LDK
Sbjct: 106 LQKRG--YAFTGLDIVISGNIPIGAGLSSSAALEV-AVALALQRLFNLPLDK-------- 154
Query: 178 GESDLDLLNKWAFEGEKIIHGKPSG-LDNTVSTYGN-----IIKFRSGNMTCIKSNMPLK 231
+L K A E G G +D S +G ++ R+ + P+
Sbjct: 155 ----AELA-KIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRTLEYEPVP--FPVG 207
Query: 232 ---MLITNTKVGR-------NTR-------ALVAGVSERSMRHPDAMSSVFNAVDSISKE 274
++I N+ V R N R A GVS +S+R D F A+ + +
Sbjct: 208 GVSIVIVNSNVKRELADSEYNERRAECEEAAEFLGVSIKSLR--DVTDEEFAALQAEIEV 265
Query: 275 LSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMG----VSHSS-----------IET 319
I +TE + LE + G L G SH S ++T
Sbjct: 266 DPKIARRAR---HVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDYEVTCPELDT 322
Query: 320 VLRTTLKF--KLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELE 363
++ L +++TGAG GGC + L+P V E V E E
Sbjct: 323 LVEIALAAGGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYE 368
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain. This
family includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 67
Score = 55.3 bits (134), Expect = 3e-10
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 15/81 (18%)
Query: 131 TVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAF 190
+ + S++PLGAGLGSSAA V+L AL L + L K + L + A
Sbjct: 1 DIEIESNIPLGAGLGSSAALAVALLLALN-ELFGLPLSK-------------EELARLAL 46
Query: 191 EGEKIIHGKPSGLDNTVSTYG 211
E E G SG D S YG
Sbjct: 47 EAEG-AIGVNSGDDVAASVYG 66
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 53.3 bits (128), Expect = 8e-08
Identities = 58/267 (21%), Positives = 93/267 (34%), Gaps = 55/267 (20%)
Query: 130 ATVVVTSDLPLGAGLGSSAAFCVSLTAAL--LGSLNSVHLDKNHQGWLTYGESDLDLLNK 187
A +V + ++P G+GL SSAAF ++ A L +G L LL
Sbjct: 111 ADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQ--------------ILLRI 156
Query: 188 WAFEGEKIIHGKPSGLDNTVSTYGN-----IIKFRSGNMTCIKSNMP-LKMLITNTKVGR 241
E + +D S G +++ RS T K + +I NT V R
Sbjct: 157 QVAE-NHFVGVNCGIMDQAASVLGKEDHALLVECRSLKATPFKFPQLGIAFVIANTNVKR 215
Query: 242 -------NTRALVAGVSERSMRHP------DAMSSVFNAVDSISKELSTIIESPTPDDLS 288
NTR + + D M+ F + ++ ++E
Sbjct: 216 TLAPSNYNTRRQECTTAANFLAATDKGALRDFMNEYFARYIARLTKMLPLVEERAKH--V 273
Query: 289 ITEKEERLEELMEMNQGLLQCMGV----SHSSIE-----TVLRTTLKFKLA--------S 331
++E L+ + M + G SH+S + T A S
Sbjct: 274 VSENLRVLKAVKAMKDNDFKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGS 333
Query: 332 KLTGAGGGGCALTLLPTLLSATVVEKV 358
++TGAG GGC + L+P V + V
Sbjct: 334 RMTGAGFGGCTVHLVPNENVDKVRQAV 360
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 45.2 bits (107), Expect = 3e-05
Identities = 56/267 (20%), Positives = 102/267 (38%), Gaps = 50/267 (18%)
Query: 134 VTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVH---LDKNHQGWLTYGESDLDLLNKWAF 190
+TSD+ +G+GL SSAA L A+LG++ + +D+ Q L A
Sbjct: 96 ITSDVEIGSGLSSSAA----LECAVLGAVGAATGTRIDRLEQARL-------------AQ 138
Query: 191 EGEKIIHGKPSGL-DNTVSTYGN-----IIKFRSGNMTCIKSNM---PLKMLITNTKVGR 241
E G P+GL D + +G +I FR + + + + +L+ +++
Sbjct: 139 RAENEYVGAPTGLLDQLAALFGAPKTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRARH 198
Query: 242 NTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLS-----ITEKEERL 296
S A V + + L+ + P D +TE + L
Sbjct: 199 RHAGGEYAARRASCERAAADLGVSSLRAVQDRGLAALGAIADPIDARRARHVLTENQRVL 258
Query: 297 EELMEMNQGLL----QCMGVSHSS-----------IETVLRTTLKF-KLASKLTGAGGGG 340
+ + Q + SH+S I+ + + ++ L +++TG G GG
Sbjct: 259 DFAAALADSDFTAAGQLLTASHASMRDDFEITTERIDLIADSAVRAGALGARMTGGGFGG 318
Query: 341 CALTLLPTLLSATVVEKVTTELETCGF 367
C + L+P + V + V T G+
Sbjct: 319 CVIALVPADRAEDVADTVRRAAVTAGY 345
>gnl|CDD|233318 TIGR01219, Pmev_kin_ERG8, phosphomevalonate kinase, ERG8-type,
eukaryotic branch. This enzyme is part of the
mevalonate pathway, one of two alternative pathways for
the biosynthesis of IPP. In an example of nonorthologous
gene displacement, two different types of
phosphomevalonate kinase are found - the animal type and
this ERG8 type. This model represents plant and fungal
forms of the ERG8 type of phosphomevalonate kinase
[Central intermediary metabolism, Other].
Length = 454
Score = 41.9 bits (98), Expect = 4e-04
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 143 GLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGK-PS 201
GLGSSAA +L AALL L V + +G SDLD+++ A + GK S
Sbjct: 154 GLGSSAAMTTALVAALLHYLGVV-DLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGS 212
Query: 202 GLDNTVSTYGNIIKFR 217
G D + + YG+ R
Sbjct: 213 GFDVSAAVYGSQRYRR 228
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 40.4 bits (95), Expect = 0.001
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 134 VTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDK 169
V+S+LP+GAGL SSA+ V+ A L +++L K
Sbjct: 91 VSSNLPIGAGLSSSASLEVA-VAYALNEAYNLNLSK 125
>gnl|CDD|130287 TIGR01220, Pmev_kin_Gr_pos, phosphomevalonate kinase, ERG8-type,
Gram-positive branch. This enzyme is part of the
mevalonate pathway, one of two alternative pathways for
the biosynthesis of IPP. In an example of nonorthologous
gene displacement, two different types of
phosphomevalonate kinase are found - the animal type and
this ERG8 type. This model represents the low GC
Gram-positive organism forms of the ERG8 type of
phosphomevalonate kinase [Central intermediary
metabolism, Other].
Length = 358
Score = 40.3 bits (94), Expect = 0.001
Identities = 84/382 (21%), Positives = 142/382 (37%), Gaps = 91/382 (23%)
Query: 3 VKARAPGKIILAGEHAVVH-GSTAVAACIDLYTYVSLRFPSDSDD--DDTLKLVLKDMEL 59
+ APGK+ +AGE+AVV G+ A+ +D + V++ D+D D + L +
Sbjct: 1 IVVHAPGKLFVAGEYAVVEPGNPAILVAVDRFVTVTV---EDADGAADVIISSDLGPQPV 57
Query: 60 NFSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLW 119
+ R+ S + I+++ E+N + LS
Sbjct: 58 GWRRHDGRLVVRDPDARSALAYVVSA-----IETVERYAGERNQKLPALHLS-------- 104
Query: 120 LYTSIIGFKPATVVVTSDLPLGA----GLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWL 175
V+S L GLGSS A V+ A LN+ +
Sbjct: 105 --------------VSSRLDEADGRKYGLGSSGAVTVATVKA----LNAFY--------- 137
Query: 176 TYGESDLDLLNKWAFEGEKIIH----GKPSGLDNTVSTYGNIIKF-------------RS 218
DL+L N F+ + K S D STYG I + R
Sbjct: 138 -----DLELSNDEIFKLAMLATAELQPKGSCGDIAASTYGGWIAYSTFDHDWVLQLARRV 192
Query: 219 GNMTCIKSNMP------------LKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFN 266
G +K+ P L +LI T +T +LV+ V R R A F
Sbjct: 193 GVDRTLKAPWPGLSIRPLPAPKGLTLLIGWTGSPASTASLVSDVHRRKWR-GSASYQRF- 250
Query: 267 AVDSISKELSTIIESPTPDDLSITEKEER--LEELMEMNQGLLQCMGVSHSSIETVLRTT 324
+++ + + + I + D++ +KE R +EL ++ +G+ ++ +
Sbjct: 251 -LETSTDCVESAITAFETGDITSLQKEIRRNRQELARLDD--EVGVGIETEKLKALCDAA 307
Query: 325 LKFKLASKLTGAGGGGCALTLL 346
+ A+K +GAGGG C + +L
Sbjct: 308 EAYGGAAKPSGAGGGDCGIAIL 329
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal. This family
includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 86
Score = 37.1 bits (86), Expect = 0.001
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 294 ERLEELMEMNQGLLQ---CMGVSHSSIETVLRTTLKFK-LASKLTGAGGGGCALTLLPTL 349
E L EL+ N L+ +G+ ++ +L + L +KL+G+GGG L
Sbjct: 11 ELLGELLNENALSLEPLLYLGILSPELDELLEELRELGALGAKLSGSGGGPTVFALFKDE 70
Query: 350 LSA-TVVEKVTTELE 363
A V E +
Sbjct: 71 EDAEEVAEALREAYP 85
>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and
mevalonate kinase [General function prediction only].
Length = 333
Score = 39.7 bits (93), Expect = 0.002
Identities = 73/364 (20%), Positives = 124/364 (34%), Gaps = 91/364 (25%)
Query: 6 RAPGKIILAG------EHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMEL 59
RAP +I G + HG + A ID Y YV++ DD E+
Sbjct: 5 RAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIYVTI---EKGFDD----------EI 51
Query: 60 NFSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLW 119
+ T E +KS +
Sbjct: 52 RVRYDRT----------------------EFVKSYLEN----------EHKPLVVESLKR 79
Query: 120 LYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGE 179
+ G P + SD P G+GLGSS+AF V+L LN++H K + G
Sbjct: 80 DFLEFNGGTPIELHTQSDAPPGSGLGSSSAFVVAL-------LNALHAWKG----ESLGP 128
Query: 180 SDLDLLNKWAFEGEKIIHGKPSGL-DNTVSTYG--NIIKFRSGNMTCIKSNMPLKMLITN 236
+ L + A+E E+ G D + +G N ++FR GN + + + + T
Sbjct: 129 YE---LAREAYEIEREDLKIVGGKQDQYAAAFGGFNFMEFR-GNGEVVVNPLRINRERTA 184
Query: 237 TKVGRNTRALVAGVSERSM--------RHPDAMSSVFNAVDSISKELSTIIESPTPDDLS 288
++ G++ +S D A+ + + ++ +D+
Sbjct: 185 -ELEARLLLYYTGITRQSSEVIEDQVRNVVDGDEETLEALHEMKALAYEMKDALVRNDIP 243
Query: 289 ITEKEERLEELM----EMNQGLLQCMGVSHSSIETVLRTTLKF-KLASKLTGAGGGGCAL 343
+++ E + L +S+ +I+ + LK KL+GAGGGG L
Sbjct: 244 ------EFGQILDRGWEAKKKLSS--RISNDAIDRIYELALKNGAYGGKLSGAGGGGFLL 295
Query: 344 TLLP 347
Sbjct: 296 FFCD 299
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 40.1 bits (94), Expect = 0.002
Identities = 40/171 (23%), Positives = 66/171 (38%), Gaps = 33/171 (19%)
Query: 2 EVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNF 61
++ AR+PG++ L GEH G + + I T V++R S KL + ++ +
Sbjct: 48 DLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSK-----KLRIANVNDKY 102
Query: 62 SWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLY 121
+ FP+ P VD N + F +L
Sbjct: 103 TTCT-------------FPADPDQ-----------EVDLANHKWGNYFICGYKGVFEFLK 138
Query: 122 TSIIGFKPAT---VVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDK 169
+ + P VVV +P G+GL SSAA S A++ +L ++ K
Sbjct: 139 SKGVDVGPPVGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALG-LNFTK 188
Score = 28.9 bits (65), Expect = 5.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 329 LASKLTGAGGGGCALTL 345
L ++LTGAG GGCA+ L
Sbjct: 430 LGARLTGAGWGGCAVAL 446
>gnl|CDD|224599 COG1685, COG1685, Archaeal shikimate kinase [Amino acid transport
and metabolism / Coenzyme metabolism].
Length = 278
Score = 39.2 bits (92), Expect = 0.002
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 129 PATVVVTSDLPLGAGLGSSAAFCVSLTAALL 159
V V S++P+G+GL SS+A +L A+L
Sbjct: 70 GVEVEVESEIPVGSGLKSSSAASNALVKAVL 100
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional.
Length = 382
Score = 38.0 bits (89), Expect = 0.006
Identities = 76/288 (26%), Positives = 110/288 (38%), Gaps = 87/288 (30%)
Query: 127 FKPATVVVTSDLPLGAGLGSSAAFCVSL--TAALLGSL--NSVHLDKNHQGWLTYGESDL 182
F A +V++ ++P GAGL SSA+ V++ T L L + + N Q
Sbjct: 110 FGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQ---------- 159
Query: 183 DLLNKWAFEGEKIIHGKPSG-LDNTVSTYGN-----IIKFRSGNMTCIKSNMP--LKMLI 234
E E G G +D +S G +I RS + MP + ++I
Sbjct: 160 --------EAENQFVGCNCGIMDQLISALGKKDHALLIDCRSLETKAVP--MPEGVAVVI 209
Query: 235 TNTKVGR-------NTR-------ALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIE 280
N+ V R NTR A GV ++R D FNAV + EL
Sbjct: 210 INSNVKRGLVDSEYNTRRQQCETAARFFGVK--ALR--DVTLEQFNAVAA---EL----- 257
Query: 281 SPTPDDLS-------ITEKEERLEELMEMNQGLLQCMGV----SHSSIE-----TV---- 320
D + ITE LE + G L+ MG SH+S+ TV
Sbjct: 258 ----DPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDFEITVPQID 313
Query: 321 -LRTTLKFKLASK----LTGAGGGGCALTLLPTLLSATVVEKVTTELE 363
L +K + + +TG G GGC + L+P L V + V + E
Sbjct: 314 TLVEIVKAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYE 361
>gnl|CDD|233637 TIGR01920, Shik_kin_archae, shikimate kinase. This model
represents the shikimate kinase (SK) gene found in
archaea which is only distantly related to homoserine
kinase (thrB) and not atr all to the bacterial SK
enzyme. The SK from M. janaschii has been overexpressed
in E. coli and characterized. SK catalyzes the fifth
step of the biosynthesis of chorismate from
D-erythrose-4-phosphate and phosphoenolpyruvate [Amino
acid biosynthesis, Aromatic amino acid family].
Length = 261
Score = 36.6 bits (85), Expect = 0.013
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 129 PATVVVTSDLPLGAGLGSSAAFCVSLTAALL 159
V V S++P G+GL SS+A +L A+L
Sbjct: 64 GLEVEVESEIPAGSGLKSSSALVNALVEAVL 94
>gnl|CDD|234920 PRK01212, PRK01212, homoserine kinase; Provisional.
Length = 301
Score = 35.5 bits (83), Expect = 0.034
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 128 KPATVVVTSDLPLGAGLGSSAAFCVSLTAALLG 160
+ + ++PLG GLGSSAA S+ A L+
Sbjct: 80 PGLRIELEKNIPLGRGLGSSAA---SIVAGLVA 109
>gnl|CDD|223161 COG0083, ThrB, Homoserine kinase [Amino acid transport and
metabolism].
Length = 299
Score = 34.1 bits (79), Expect = 0.085
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 128 KPATVVVTSDLPLGAGLGSSAAFCVSLTAAL 158
+ + +PLG GLGSSAA V+ AA
Sbjct: 76 AGVKIRIEKGIPLGRGLGSSAASIVAALAAA 106
>gnl|CDD|234906 PRK01123, PRK01123, shikimate kinase; Provisional.
Length = 282
Score = 33.3 bits (77), Expect = 0.17
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 129 PATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLN 163
ATV S++PL +GL SS+A + A L +L
Sbjct: 75 GATVRTKSEIPLASGLKSSSAAANATVLATLDALG 109
>gnl|CDD|129295 TIGR00191, thrB, homoserine kinase. Homoserine kinase is part of
the threonine biosynthetic pathway.Homoserine kinase is
a member of the GHMP kinases (Galactokinase, Homoserine
kinase, Mevalonate kinase, Phosphomevalonate kinase) and
shares with them an amino-terminal domain probably
related to ATP binding.P.aeruginosa homoserine kinase
seems not to be homologous (see PROSITE:PDOC0054) [Amino
acid biosynthesis, Aspartate family].
Length = 302
Score = 33.1 bits (76), Expect = 0.22
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 125 IGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVH 166
I P V + ++PLG GLGSSAA ++ AAL + N +
Sbjct: 76 IRMPPVKVTLEKNIPLGRGLGSSAA---AIVAALA-AANELC 113
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional.
Length = 468
Score = 32.9 bits (75), Expect = 0.32
Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 5/41 (12%)
Query: 133 VVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQG 173
VV LP+GAG+ +SA+F V ALL ++N+V + + ++G
Sbjct: 138 VVHGTLPMGAGMSASASFGV----ALLNAINTV-VTRRYKG 173
>gnl|CDD|190336 pfam02520, DUF148, Domain of unknown function DUF148. This domain
has no known function nor do any of the proteins that
possess it. In one member of this family the aligned
region is repeated twice.
Length = 114
Score = 29.9 bits (68), Expect = 0.74
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 248 AGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELME 301
A +E +S+ ++VD+ +LS I+++ DL+ +K+E ++ L +
Sbjct: 47 ALKAEAEKNVTAVISN-LSSVDA---KLSAILDN---KDLTRRQKKEAIDALKK 93
>gnl|CDD|237379 PRK13412, fkp, bifunctional
fucokinase/L-fucose-1-P-guanylyltransferase;
Provisional.
Length = 974
Score = 31.0 bits (70), Expect = 1.5
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 301 EMNQGLLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGG 340
E N+ L G + +++E ++ + L KL GAGGGG
Sbjct: 892 EQNKALDS--GTNPAAVEAIIELIKDYTLGYKLPGAGGGG 929
>gnl|CDD|191722 pfam07294, Fibroin_P25, Fibroin P25. This family consists of
several insect fibroin P25 proteins. Silk fibroin
produced by the silkworm Bombyx mori consists of a heavy
chain, a light chain, and a glycoprotein, P25. The heavy
and light chains are linked by a disulfide bond, and P25
associates with disulfide-linked heavy and light chains
by non-covalent interactions. P25 is plays an important
role in maintaining integrity of the complex.
Length = 198
Score = 29.7 bits (67), Expect = 2.0
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 134 VTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGE 193
+T++L C + T A + +L H+D N + + DL LLN +E E
Sbjct: 121 LTTNLNNANRFN----LCSAFTFADVAALPIFHIDPNDKLTANFLSRDLTLLN--IYERE 174
Query: 194 KIIHGKPSGLDN 205
+ SGL
Sbjct: 175 T-FFYRASGLAR 185
>gnl|CDD|226407 COG3890, ERG8, Phosphomevalonate kinase [Lipid metabolism].
Length = 337
Score = 29.5 bits (66), Expect = 3.0
Identities = 47/222 (21%), Positives = 76/222 (34%), Gaps = 57/222 (25%)
Query: 2 EVKARAPGKIILAGEH-AVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELN 60
+ APGK++LAG++ +V G +A A I+ + S D + + ++
Sbjct: 3 LISFSAPGKLLLAGDYSILVEGLSAHAIAINKRAFCSFVRVKSKD---SWLFHISIKGID 59
Query: 61 -FSWSVTRIKATLSHLGSPFPSTPTTC--SMEVIKSIAVLVDEQNIPEAKIGLSSGATAF 117
S+ I+ + F C ++EV A +
Sbjct: 60 KNSF----IELRSDFVFKYFAYLSQNCFQNLEVFADDAYYDQSNFFFDD----------- 104
Query: 118 LWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSL-NSVHLDKNHQGWLT 176
G K GLGSSAA SLT L S N+ ++D+ +
Sbjct: 105 --------GTK-------------TGLGSSAAVATSLTCGLFLSHANATNVDEKGE---- 139
Query: 177 YGESDLDLLNKWAFEGEKIIHGK-PSGLDNTVSTYGNIIKFR 217
++K A G SG D + +G+II R
Sbjct: 140 --------IHKLAQIAHCYAQGGIGSGFDIAAAIFGSIIYRR 173
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 29.1 bits (66), Expect = 4.4
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 9/82 (10%)
Query: 65 VTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAK-IGLSSGATAFLWLYTS 123
+TR+ L P C +E A+ +G + L +
Sbjct: 28 LTRVTGLLLEAVGPQARIGELCKIE-------RSRGSEKVLAEVVGFN-EERVLLMPFEP 79
Query: 124 IIGFKPATVVVTSDLPLGAGLG 145
+ G P VV + PL +G
Sbjct: 80 VEGVSPGAEVVPTGRPLSVPVG 101
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional.
Length = 387
Score = 29.1 bits (66), Expect = 4.9
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 126 GFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDK 169
GF +++ ++P GAGL SSA+ + LT +L L ++ LD+
Sbjct: 112 GF---DILIYGNIPNGAGLSSSASIEL-LTGVILKDLFNLDLDR 151
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 29.2 bits (65), Expect = 4.9
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 291 EKEERLEELMEMNQGLLQCMGVSHSSIETVLRTTLKFKLASK 332
+K+ERL++L+E + L + + L+ + K A +
Sbjct: 171 KKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALE 212
>gnl|CDD|237801 PRK14719, PRK14719, bifunctional
RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase;
Provisional.
Length = 360
Score = 28.8 bits (64), Expect = 5.0
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 271 ISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIETVLRTTLKFKLA 330
++K+ T+I + TP EKEE++ +L EM +LQ GV + ++ K +
Sbjct: 227 LNKDAKTVIATTTP---ISDEKEEKIRKLKEMGITVLQA-GVQKVDLRKIMNEIYKMGIN 282
Query: 331 SKLTGAGG 338
L GG
Sbjct: 283 KILLEGGG 290
>gnl|CDD|215248 PLN02451, PLN02451, homoserine kinase.
Length = 370
Score = 29.0 bits (65), Expect = 5.0
Identities = 11/12 (91%), Positives = 12/12 (100%)
Query: 138 LPLGAGLGSSAA 149
LPLG+GLGSSAA
Sbjct: 143 LPLGSGLGSSAA 154
>gnl|CDD|224742 COG1829, COG1829, Predicted archaeal kinase (sugar kinase
superfamily) [General function prediction only].
Length = 283
Score = 28.5 bits (64), Expect = 6.3
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 124 IIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAAL 158
+G V + S +PLG G G S A +L AL
Sbjct: 69 KLGPDGVGVRIESPVPLGCGYGVSGA--GALGTAL 101
>gnl|CDD|237673 PRK14325, PRK14325, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 444
Score = 28.6 bits (65), Expect = 6.5
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 284 PDDLSITEKEERLEELMEMNQGLL--QCMGVSHSSIETVLR 322
PDD+ K+ERL+ L Q L+ Q M S S + TV R
Sbjct: 350 PDDVPEEVKKERLQRL----QALINQQQMAFSRSMVGTVQR 386
>gnl|CDD|237973 PRK15488, PRK15488, thiosulfate reductase PhsA; Provisional.
Length = 759
Score = 28.5 bits (64), Expect = 6.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 332 KLTGAGGGGCALT-LLPTLLSATVV------EKVTTEL-ETCGFQCLI 371
K GAG CAL LLP L+A + K+T + E C +C I
Sbjct: 10 KGAGAGCAACALGSLLPGALAANEIAQLKGKTKLTPSICEMCSTRCPI 57
>gnl|CDD|219818 pfam08393, DHC_N2, Dynein heavy chain, N-terminal region 2.
Dyneins are described as motor proteins of eukaryotic
cells, as they can convert energy derived from the
hydrolysis of ATP to force and movement along
cytoskeletal polymers, such as microtubules. This region
is found C-terminal to the dynein heavy chain N-terminal
region 1 (pfam08385) in many members of this family. No
functions seem to have been attributed specifically to
this region.
Length = 408
Score = 28.3 bits (64), Expect = 8.1
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 262 SSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQC 309
S F+ VD K+L P+ L + LE+L ++N+ L +
Sbjct: 250 SKRFSNVDKEWKKLMKKANK-DPNVLEVCNIPGLLEKLEKLNEQLEKI 296
>gnl|CDD|226917 COG4542, PduX, Protein involved in propanediol utilization, and
related proteins (includes coumermycin biosynthetic
protein), possible kinase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 293
Score = 27.8 bits (62), Expect = 9.0
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 119 WLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLN 163
W T +I +++ S +P+G G+ SS A V+ A L
Sbjct: 74 WGVTKLIN-TGIDLLLQSSIPVGKGMASSTADLVATARATARFLG 117
>gnl|CDD|235055 PRK02625, rpoC1, DNA-directed RNA polymerase subunit gamma;
Provisional.
Length = 627
Score = 28.2 bits (63), Expect = 9.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 30 IDLYTYVSLRFPSDSDDDDTLKLVLKDMEL 59
IDL+ +V +RF + +DDD LK L
Sbjct: 551 IDLHAWVWVRFNGEVEDDDEDTEPLKTETL 580
>gnl|CDD|225941 COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid
metabolism].
Length = 329
Score = 27.7 bits (62), Expect = 9.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 132 VVVTSDLPLGAGLGSSAAFCVSLTAALLGSL 162
+V ++ P AGL SSAA +L AAL
Sbjct: 93 IVSYNNFPTAAGLASSAAGAAALAAALNRLY 123
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,052,046
Number of extensions: 1816763
Number of successful extensions: 1896
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1877
Number of HSP's successfully gapped: 63
Length of query: 387
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 288
Effective length of database: 6,546,556
Effective search space: 1885408128
Effective search space used: 1885408128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)