RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 045151
(387 letters)
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 225
Score = 159 bits (403), Expect = 1e-47
Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 5/224 (2%)
Query: 3 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFS 62
+ APGK+IL GEHAVVHG A+A ++L T++ LR + + L L ++ +
Sbjct: 6 LLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLR----PQSNGKVSLNLPNVGIKQV 61
Query: 63 WSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYT 122
W V ++ + T + + + L + +L +
Sbjct: 62 WDVATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICR 121
Query: 123 SIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQG-WLTYGESD 181
++V S+LP GAGLGSSAA+ V + AALL + V +G ++ E D
Sbjct: 122 KQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEED 181
Query: 182 LDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIK 225
L +NKWA+EGE++IHG PSG+DN+VST+G ++++ G M+ +K
Sbjct: 182 LKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLK 225
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 131 bits (330), Expect = 2e-37
Identities = 64/153 (41%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 229 PLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLS 288
L++L+TNTKV R+T+ALVAGV R ++ P+ M+ + ++D+IS E ++
Sbjct: 4 ALQILLTNTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVL--GEMAAAP 61
Query: 289 ITEKEERLEELMEMNQGLLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPT 348
+ E+ LEELM+MNQ L +GV H+S++ + + T L SKLTGAGGGGC +TLL
Sbjct: 62 VPEQYLVLEELMDMNQHHLNALGVGHASLDQLCQVTAAHGLHSKLTGAGGGGCGITLLKP 121
Query: 349 LLSATVVEKVTTELETCGFQCLIAGIGGTGVEV 381
L VE L CGF C IG GV +
Sbjct: 122 GLERAKVEAAKQALTGCGFDCWETSIGAPGVSM 154
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 180
Score = 94.5 bits (234), Expect = 1e-23
Identities = 52/220 (23%), Positives = 85/220 (38%), Gaps = 47/220 (21%)
Query: 2 EVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNF 61
+ P K+IL GEHAVV+G A++ IDL + + ++ +D + L L D+ +
Sbjct: 5 HMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKET----QEDEIILNLNDLNKSL 60
Query: 62 SWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLY 121
++ IK + F + +I +D NI
Sbjct: 61 GLNLNEIKNINPNNFGDFKY--------CLCAIKNTLDYLNIE----------------- 95
Query: 122 TSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESD 181
GFK + ++S +P+ GLGSSA+ + A+ G N D
Sbjct: 96 -PKTGFK---INISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEI---------- 141
Query: 182 LDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNM 221
K + EK I GK S D + TY I++ ++
Sbjct: 142 ----AKLGYMVEKEIQGKASITDTSTITYKGILEIKNNKF 177
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 194
Score = 86.8 bits (214), Expect = 1e-20
Identities = 27/221 (12%), Positives = 56/221 (25%), Gaps = 59/221 (26%)
Query: 3 VKARAPGKIILAGEHAVVH-GSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNF 61
+ + GK+ AGE+A++ G A+ I +Y + F
Sbjct: 2 IAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYR---------------- 45
Query: 62 SWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLY 121
I S P L A + +
Sbjct: 46 -----------------------------IYSDMFDFAVDLRPNPDYSLIQETIALMGDF 76
Query: 122 TSIIG--FKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGE 179
++ G +P ++ + + + + + L +L
Sbjct: 77 LAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSV---------- 126
Query: 180 SDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGN 220
D +LL K S D +++ ++S +
Sbjct: 127 -DQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFD 166
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 137
Score = 75.0 bits (184), Expect = 5e-17
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 241 RNTRALVAGVSERSMRHPDAMSSV--FNAVDSISKELSTIIESPTPDDLSITEKE-ERLE 297
+N + L+ +R + + ++ V D I KE+ +I+ ++ K E
Sbjct: 9 KNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKEIDKVIDE------ALKIKNKEDFG 62
Query: 298 ELMEMNQGLLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEK 357
+LM N LL+ + +S ++ ++ +F +KLTGAGGGGC + L+ ++
Sbjct: 63 KLMTKNHELLKKLNISTPKLDRIVDIGNRFGFGAKLTGAGGGGCVIILVNE----EKEKE 118
Query: 358 VTTELETCGFQCLIAGIG 375
+ EL + +
Sbjct: 119 LLKELNKEDVRIFNCRMM 136
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 67.2 bits (163), Expect = 1e-13
Identities = 42/234 (17%), Positives = 69/234 (29%), Gaps = 52/234 (22%)
Query: 2 EVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNF 61
E+ APG++ L GEH + + ++L T + D + L+ +
Sbjct: 28 ELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGS----PRKDGLVSLLTTSEGADE 83
Query: 62 SWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLY 121
+ L Q E + + Y
Sbjct: 84 PQRLQFP----------------------------LPTAQRSLEPGTPRWANYVKGVIQY 115
Query: 122 TSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESD 181
+ VV S +PLG GL SSA+ V+ T L L +
Sbjct: 116 YPAAPLPGFSAVVVSSVPLGGGLSSSASLEVA-TYTFLQQLCPDSGTIAARA-------- 166
Query: 182 LDLLNKWAFEGEKIIHGKPSGL-DNTVSTYGN-----IIKFRSGNMTCIKSNMP 229
+ + E G P G+ D +S G +I RS + + + P
Sbjct: 167 -----QVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDP 215
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 135
Score = 63.2 bits (153), Expect = 7e-13
Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 20/146 (13%)
Query: 225 KSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTP 284
K + L+ TK + +V + + ++ + L +E
Sbjct: 1 KPTLECDFLVGWTKEVAVSSHMVQQIKQNINQN------FLTSSKETVVSLVEALE---- 50
Query: 285 DDLSITEKEERLEELMEMNQGLLQCMGVSHSS--IETVLRTTLKFKLASKLTGAGGGGCA 342
K E++ E +E+ LL+ + + + + + + +K +GAGGG C
Sbjct: 51 -----QGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCG 105
Query: 343 LTLLPTLLSATVVEKVTTELETCGFQ 368
+ L A + + G +
Sbjct: 106 IALSF---DAQSTKTLKNRWADLGIE 128
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 176
Score = 56.4 bits (135), Expect = 3e-10
Identities = 42/214 (19%), Positives = 69/214 (32%), Gaps = 58/214 (27%)
Query: 6 RAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSV 65
++PG++ L GEH + IDLYT ++ K ++
Sbjct: 3 KSPGRVNLIGEHTDYTYGYVMPMAIDLYTIITAE---------------KYDKVQLYSEH 47
Query: 66 TRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSII 125
+ T + + V+ + I
Sbjct: 48 FNEEKTFTLDNLTKEGSWIDYVKGVLW-----------------------VLIQEGYKIG 84
Query: 126 GFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLL 185
G K +T DLPLGAGL SSA+F V + L L ++++D + L
Sbjct: 85 GLK---GKITGDLPLGAGLSSSASFEVGILEV-LNQLYNLNIDPLKKALLAK-------- 132
Query: 186 NKWAFEGEKIIHGKPSGL-DNTVSTYG--NIIKF 216
+ E G P G+ D +G + + F
Sbjct: 133 -----KAENEFVGVPCGILDQFAVVFGKKDNVIF 161
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 205
Score = 52.5 bits (125), Expect = 1e-08
Identities = 31/230 (13%), Positives = 58/230 (25%), Gaps = 54/230 (23%)
Query: 5 ARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWS 64
+PG+I L GEH +G A I + T R D + K + F
Sbjct: 23 FFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFD-- 80
Query: 65 VTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSI 124
L + + +
Sbjct: 81 --------------------------------LDEVEKKDGELWSNYVKGMIVMLKGAGY 108
Query: 125 IGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDL 184
K +++ ++P +GL SSA+ + + L N
Sbjct: 109 EIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELV------------ 156
Query: 185 LNKWAFEGEKIIHGKPSGL-DNTVSTYGNI-----IKFRSGNMTCIKSNM 228
+ + E G SG+ D +G + + + + +
Sbjct: 157 --QLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVPVEL 204
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 44.7 bits (105), Expect = 3e-06
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 297 EELMEMNQGLLQCMGVSHSSIETVLRTTLKFK--LASKLTGAGGGGCALTLLPTLLSATV 354
++E ++ L VS ++ ++ L S++TG G GGC +TLL +
Sbjct: 89 RLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHA 148
Query: 355 VEKVTTE--LETCGFQCLIAGIGGTGVEV 381
+ + + A G +V
Sbjct: 149 MRHIQEHYGGTATFYLSQAAD----GAKV 173
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 40.5 bits (94), Expect = 8e-05
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 298 ELMEMNQ-GLLQCMGVSHSSIETVLRTTLK-FKLASKLTGAGGGGCALTLLPTLLSATVV 355
+++ L + VS ++ ++ ++ ++LTGAG GG A+ L+ + T+
Sbjct: 85 KILTTAHWDLAENYRVSCEELDFFVKKAMELGAYGARLTGAGFGGSAIALVDKDKAKTIG 144
Query: 356 EKVTTE 361
+ + E
Sbjct: 145 DAILRE 150
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 39.3 bits (91), Expect = 2e-04
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 298 ELMEMNQ-GLLQCMGVSHSSIETVLRTTLKF--KLASKLTGAGGGGCALTLLPTLLSATV 354
EL+ + L V+ ++T+ T K L +++TGAG GGCA+ L+ +
Sbjct: 94 ELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAF 153
Query: 355 VEKVTTELETCGF 367
+ V E
Sbjct: 154 RKAVGQVYEEVVG 166
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 163
Score = 35.8 bits (82), Expect = 0.003
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 14/90 (15%)
Query: 129 PATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKW 188
+ + + G+GLGSSAA TA + L ++LDK L +
Sbjct: 76 GVKITIKKGVKAGSGLGSSAASSAG-TAYAINELFKLNLDKLK-------------LVDY 121
Query: 189 AFEGEKIIHGKPSGLDNTVSTYGNIIKFRS 218
A GE G + + +G +
Sbjct: 122 ASYGELASSGAKHADNVAPAIFGGFTMVTN 151
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 188
Score = 29.6 bits (66), Expect = 0.47
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 121 YTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAAL 158
+ +V ++ P AGL SSAA +L +A+
Sbjct: 93 SLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAI 130
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 128
Score = 27.2 bits (60), Expect = 2.1
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 258 PDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEEL 299
D ++ D + ++L S PD S L +L
Sbjct: 82 TDIINLFLETKDIMQEQLDAYKNSEEPDAASFEYICNALRQL 123
>d1d8ca_ c.1.13.1 (A:) Malate synthase G {Escherichia coli [TaxId:
562]}
Length = 720
Score = 26.5 bits (58), Expect = 7.6
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 88 MEVIKSIAVLVDEQN 102
++++A +VD+QN
Sbjct: 655 QASLENMAKVVDQQN 669
>d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 726
Score = 26.5 bits (58), Expect = 7.8
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 88 MEVIKSIAVLVDEQN 102
++ +A LVD QN
Sbjct: 658 RASLERMAPLVDRQN 672
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,342,675
Number of extensions: 59467
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 20
Length of query: 387
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 300
Effective length of database: 1,213,086
Effective search space: 363925800
Effective search space used: 363925800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.0 bits)