BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045152
(533 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 40/204 (19%)
Query: 212 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGL 271
+++ G+ G GK+ LA A + + C S + + K GL + L
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEG-------CFSGGVHWVSIGKQDKSGLLMKLQNL 202
Query: 272 S---------------EFESLMKQIQEYITRK--KFFLVLDDVWDGDYKKWNPFFSCLKN 314
E +++ + RK + L+LDDVWD P+ LK
Sbjct: 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-------PWV--LKA 253
Query: 315 GHHESKILITTRDRSVALQ-LGSIDIIPVKE-LAEEECWSLLERLAFFRRSVDDHEKLEP 372
++ +IL+TTRD+SV +G ++PV+ L E+ +L ++ E L
Sbjct: 254 FDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPA 308
Query: 373 IGRKIAHKCKGLPLAAKVIWNLLR 396
I +CKG PL +I LLR
Sbjct: 309 EAHSIIKECKGSPLVVSLIGALLR 332
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 83/204 (40%), Gaps = 40/204 (19%)
Query: 212 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGL 271
+++ G+ G GK+ LA A + + C S + + K GL + L
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEG-------CFSGGVHWVSIGKQDKSGLLMKLQNL 209
Query: 272 S---------------EFESLMKQIQEYITRK--KFFLVLDDVWDGDYKKWNPFFSCLKN 314
E +++ + RK + L+LDDVWD P+ LK
Sbjct: 210 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-------PWV--LKA 260
Query: 315 GHHESKILITTRDRSVALQ-LGSIDIIPVKE-LAEEECWSLLERLAFFRRSVDDHEKLEP 372
++ +IL+TT D+SV +G ++PV+ L E+ +L ++ E L
Sbjct: 261 FDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPA 315
Query: 373 IGRKIAHKCKGLPLAAKVIWNLLR 396
I +CKG PL +I LLR
Sbjct: 316 EAHSIIKECKGSPLVVSLIGALLR 339
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 40/204 (19%)
Query: 212 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVS---- 267
+++ G+ G GK+ LA A + ++ C + V K GL +
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRD-------HSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNL 202
Query: 268 ASGLSEFESLMKQIQEYITRKK-------------FFLVLDDVWDGDYKKWNPFFSCLKN 314
+ L + ES +++ I K L+LDDVWD W LK
Sbjct: 203 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----W-----VLKA 253
Query: 315 GHHESKILITTRDRSVALQ-LGSIDIIPVKE-LAEEECWSLLERLAFFRRSVDDHEKLEP 372
+ +IL+TTRD+SV +G ++PV+ L +E+ +L +++ L
Sbjct: 254 FDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKA-----DLPE 308
Query: 373 IGRKIAHKCKGLPLAAKVIWNLLR 396
I +CKG PL +I LLR
Sbjct: 309 QAHSIIKECKGSPLVVSLIGALLR 332
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 83/204 (40%), Gaps = 40/204 (19%)
Query: 212 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVS---- 267
+++ G+ G GK+ LA A + + C + V K GL +
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEG-------CFPGGVHWVSVGKQDKSGLLMKLQNL 208
Query: 268 ASGLSEFESLMKQIQEYITRKK-------------FFLVLDDVWDGDYKKWNPFFSCLKN 314
+ L + ES +++ I K L+LDDVWD W LK
Sbjct: 209 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----W-----VLKA 259
Query: 315 GHHESKILITTRDRSVALQ-LGSIDIIPVKE-LAEEECWSLLERLAFFRRSVDDHEKLEP 372
+ +IL+TTRD+SV +G ++PV+ L +E+ +L +++ L
Sbjct: 260 FDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKA-----DLPE 314
Query: 373 IGRKIAHKCKGLPLAAKVIWNLLR 396
I +CKG PL +I LLR
Sbjct: 315 QAHSIIKECKGSPLVVSLIGALLR 338
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 4 AIVSSLLGQLTSVAADEVKQHVRLVTGVGEEVKKLTSNLRAIRAVL-EDAEKRQMQRDNA 62
A +S+L+ +L + +E K H GV + ++ L L + A L + E + Q D+
Sbjct: 1 AAISNLIPKLGELLTEEFKLH----KGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQ 56
Query: 63 VTFWLDQLRDASYDMEDVLDEWTTARLKLQIEGI-DDDNALALAPHKKKVRSFFCAVSNC 121
W D++R+ SY +EDV+D++ +Q++GI DDN K+ V +
Sbjct: 57 DKLWADEVRELSYVIEDVVDKFL-----VQVDGIKSDDNNNKFKGLXKRTTELLKKVKHK 111
Query: 122 FG 123
G
Sbjct: 112 HG 113
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 433 KLKVLPDYLLQTTTLQKLRILQCPSMEELP-------ILEDHIFLPRLSSLRIEYCPKLK 485
L+ LP + L++L I CP + ELP +H L L SLR+E+ ++
Sbjct: 138 PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIR 196
Query: 486 LLPDSLLQITTLKELGMEGSPL 507
LP S+ + LK L + SPL
Sbjct: 197 SLPASIANLQNLKSLKIRNSPL 218
>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From
Pyrococcus Abyssi
pdb|1YR7|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp-Gamma-S Bound
Form From Pyrococcus Abyssi
pdb|1YR8|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp Bound Form
From Pyrococcus Abyssi
pdb|1YR9|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Po4 Bound
Form From Pyrococcus Abyssi
pdb|1YRA|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRA|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRB|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|1YRB|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|2OXR|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi (After Gtp Hydrolysis)
Length = 262
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 211 VISLVGLGGIGKTTLA-----------QLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 259
++ VG G GKTTL ++AY N + +++ + D E + V +
Sbjct: 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN--LDTGVKELPYEPSIDVREFVTVEEI 73
Query: 260 IIEGLGVSASGLSEFESLMKQIQEYITR 287
+ EG G + + + ++ LM++ EY+ +
Sbjct: 74 MREGYGPNGAIVESYDRLMEKFNEYLNK 101
>pdb|1S70|A Chain A, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 330
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 233 DEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQ 282
DE KR F +W +D F + +A + E + GLS M+QI+
Sbjct: 140 DECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIR 189
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 154 KFNFKFDENVSNNVKKPERVRTISLIDEGEVCGRV 188
KFNF D V + +K ER+ + +DE GR+
Sbjct: 13 KFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRI 47
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 154 KFNFKFDENVSNNVKKPERVRTISLIDEGEVCGRV 188
KFNF D V + +K ER+ + +DE GR+
Sbjct: 12 KFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRI 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,979,060
Number of Sequences: 62578
Number of extensions: 594142
Number of successful extensions: 1785
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1767
Number of HSP's gapped (non-prelim): 30
length of query: 533
length of database: 14,973,337
effective HSP length: 103
effective length of query: 430
effective length of database: 8,527,803
effective search space: 3666955290
effective search space used: 3666955290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)