Query 045152
Match_columns 533
No_of_seqs 414 out of 3366
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 10:22:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7.3E-56 1.6E-60 483.4 27.1 470 3-508 2-631 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.4E-36 7.4E-41 345.5 28.5 216 180-410 182-413 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.5E-34 5.5E-39 283.5 15.5 222 187-415 1-226 (287)
4 TIGR03015 pepcterm_ATPase puta 99.3 1.3E-10 2.9E-15 113.3 20.0 183 208-395 42-242 (269)
5 PRK00411 cdc6 cell division co 99.3 6.8E-11 1.5E-15 122.0 17.1 211 180-392 28-256 (394)
6 PF01637 Arch_ATPase: Archaeal 99.2 2.4E-11 5.2E-16 115.6 8.9 196 184-390 1-233 (234)
7 TIGR02928 orc1/cdc6 family rep 99.2 7.2E-10 1.6E-14 113.1 17.8 206 180-388 13-243 (365)
8 PF05729 NACHT: NACHT domain 99.1 7.5E-10 1.6E-14 99.3 11.5 143 210-358 1-163 (166)
9 PRK04841 transcriptional regul 99.1 2.5E-09 5.3E-14 122.5 17.3 195 182-398 14-232 (903)
10 PRK00080 ruvB Holliday junctio 98.9 1.1E-08 2.4E-13 102.5 11.6 193 182-393 25-224 (328)
11 TIGR00635 ruvB Holliday juncti 98.8 4.5E-08 9.9E-13 97.2 13.7 192 182-393 4-203 (305)
12 PTZ00112 origin recognition co 98.8 7.9E-08 1.7E-12 102.9 15.1 213 181-395 754-986 (1164)
13 PRK13342 recombination factor 98.8 5.1E-08 1.1E-12 100.7 13.3 175 183-391 13-196 (413)
14 PRK06893 DNA replication initi 98.8 4.2E-08 9.1E-13 92.9 11.6 152 209-391 39-203 (229)
15 PF13401 AAA_22: AAA domain; P 98.8 1.2E-08 2.7E-13 87.7 6.2 118 208-327 3-125 (131)
16 COG2256 MGS1 ATPase related to 98.7 1.1E-07 2.5E-12 92.9 12.1 171 181-387 29-208 (436)
17 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.5E-07 3.4E-12 89.1 12.0 168 188-392 23-202 (226)
18 PF13191 AAA_16: AAA ATPase do 98.7 3.1E-08 6.7E-13 90.6 6.6 48 183-233 1-48 (185)
19 COG1474 CDC6 Cdc6-related prot 98.7 1.6E-06 3.5E-11 87.2 19.2 206 182-391 17-238 (366)
20 PF13173 AAA_14: AAA domain 98.6 1.3E-07 2.9E-12 80.9 8.9 119 210-350 3-127 (128)
21 PF05496 RuvB_N: Holliday junc 98.6 2.6E-07 5.6E-12 84.6 10.7 176 182-390 24-220 (233)
22 PRK05564 DNA polymerase III su 98.6 8.5E-07 1.8E-11 88.3 15.3 178 182-389 4-188 (313)
23 cd00009 AAA The AAA+ (ATPases 98.6 2.4E-07 5.2E-12 80.8 9.9 125 185-329 1-131 (151)
24 PRK14961 DNA polymerase III su 98.6 9.7E-07 2.1E-11 89.6 15.6 181 182-389 16-218 (363)
25 PRK12402 replication factor C 98.6 5.6E-07 1.2E-11 90.8 13.3 196 182-390 15-225 (337)
26 PRK14963 DNA polymerase III su 98.6 1.2E-07 2.6E-12 99.4 8.3 196 183-388 15-214 (504)
27 PRK07003 DNA polymerase III su 98.6 8E-07 1.7E-11 94.9 14.0 179 182-390 16-220 (830)
28 PRK14949 DNA polymerase III su 98.6 8E-07 1.7E-11 96.7 14.2 183 182-391 16-220 (944)
29 PTZ00202 tuzin; Provisional 98.6 2.6E-06 5.7E-11 85.1 16.1 167 179-357 259-433 (550)
30 TIGR02903 spore_lon_C ATP-depe 98.5 1.7E-06 3.7E-11 93.3 16.2 201 183-394 155-398 (615)
31 cd01128 rho_factor Transcripti 98.5 1.5E-07 3.2E-12 89.5 7.0 91 208-299 15-114 (249)
32 PRK14960 DNA polymerase III su 98.5 1E-06 2.2E-11 93.0 13.5 178 182-389 15-217 (702)
33 KOG2028 ATPase related to the 98.5 6.9E-07 1.5E-11 86.0 10.9 130 206-357 159-293 (554)
34 PRK12323 DNA polymerase III su 98.5 1.4E-06 3E-11 91.9 14.0 195 183-391 17-225 (700)
35 PRK00440 rfc replication facto 98.5 1.5E-06 3.2E-11 87.0 13.8 180 183-389 18-201 (319)
36 PLN03025 replication factor C 98.5 1.2E-06 2.5E-11 87.5 12.7 182 183-389 14-198 (319)
37 COG3899 Predicted ATPase [Gene 98.5 1.5E-06 3.2E-11 97.0 13.6 206 183-398 1-267 (849)
38 COG2909 MalT ATP-dependent tra 98.5 4.8E-06 1E-10 88.9 16.0 192 192-398 25-240 (894)
39 PRK13341 recombination factor 98.4 1.2E-06 2.6E-11 95.6 11.6 171 183-386 29-212 (725)
40 PRK06645 DNA polymerase III su 98.4 3.5E-06 7.5E-11 88.2 14.3 193 183-388 22-226 (507)
41 PRK14957 DNA polymerase III su 98.4 3.8E-06 8.2E-11 88.5 14.6 177 183-386 17-215 (546)
42 PRK09376 rho transcription ter 98.4 5.9E-07 1.3E-11 89.2 8.0 101 193-299 158-267 (416)
43 PRK04195 replication factor C 98.4 2E-06 4.3E-11 90.8 12.4 180 182-389 14-200 (482)
44 PRK07994 DNA polymerase III su 98.4 2.4E-06 5.3E-11 91.3 13.0 192 182-389 16-218 (647)
45 PRK08727 hypothetical protein; 98.4 8.3E-06 1.8E-10 77.4 14.4 148 210-388 42-201 (233)
46 PLN03210 Resistant to P. syrin 98.4 3.9E-07 8.5E-12 106.1 6.5 86 420-509 633-718 (1153)
47 TIGR02397 dnaX_nterm DNA polym 98.4 1.2E-05 2.6E-10 81.7 16.6 181 183-391 15-218 (355)
48 PRK14951 DNA polymerase III su 98.4 4.5E-06 9.9E-11 89.1 13.8 196 182-390 16-224 (618)
49 PRK14956 DNA polymerase III su 98.4 1.4E-06 3E-11 89.4 9.5 194 183-388 19-219 (484)
50 PRK08903 DnaA regulatory inact 98.4 6.3E-06 1.4E-10 78.1 13.4 153 208-395 41-203 (227)
51 PRK14962 DNA polymerase III su 98.4 5.6E-06 1.2E-10 86.3 13.9 201 182-409 14-240 (472)
52 PRK14964 DNA polymerase III su 98.4 4.6E-06 9.9E-11 86.6 12.9 181 182-388 13-214 (491)
53 PRK14958 DNA polymerase III su 98.3 4.6E-06 1E-10 87.8 12.9 183 182-390 16-219 (509)
54 PF05621 TniB: Bacterial TniB 98.3 1.4E-05 2.9E-10 76.9 14.6 198 190-390 45-260 (302)
55 PRK08691 DNA polymerase III su 98.3 5E-06 1.1E-10 88.7 12.6 179 182-390 16-219 (709)
56 PRK09112 DNA polymerase III su 98.3 9.8E-06 2.1E-10 81.3 14.1 194 181-391 22-240 (351)
57 TIGR00678 holB DNA polymerase 98.3 1.5E-05 3.2E-10 73.1 14.3 91 287-387 95-187 (188)
58 PRK07940 DNA polymerase III su 98.3 1.1E-05 2.4E-10 82.1 14.4 180 183-391 6-213 (394)
59 KOG2227 Pre-initiation complex 98.3 1.8E-05 4E-10 79.1 15.0 204 180-388 148-365 (529)
60 PRK07471 DNA polymerase III su 98.3 1.9E-05 4.1E-10 79.7 15.6 191 182-391 19-238 (365)
61 TIGR01242 26Sp45 26S proteasom 98.3 5.6E-06 1.2E-10 84.3 11.9 180 181-386 121-329 (364)
62 PRK09087 hypothetical protein; 98.3 1.1E-05 2.4E-10 76.0 12.9 141 209-390 44-194 (226)
63 PRK08084 DNA replication initi 98.3 2.1E-05 4.7E-10 74.7 14.9 152 209-391 45-209 (235)
64 PRK05896 DNA polymerase III su 98.3 9.7E-06 2.1E-10 85.6 13.2 189 182-386 16-215 (605)
65 PRK14955 DNA polymerase III su 98.3 1.1E-05 2.5E-10 82.8 13.1 198 182-388 16-225 (397)
66 PRK14969 DNA polymerase III su 98.2 1.3E-05 2.9E-10 84.9 13.3 180 182-387 16-216 (527)
67 TIGR00767 rho transcription te 98.2 2.9E-06 6.2E-11 84.8 7.6 92 207-299 166-266 (415)
68 PRK09111 DNA polymerase III su 98.2 1.8E-05 4E-10 84.6 14.1 196 182-390 24-232 (598)
69 PRK05642 DNA replication initi 98.2 3.4E-05 7.4E-10 73.2 14.1 152 209-391 45-208 (234)
70 PRK07764 DNA polymerase III su 98.2 2.6E-05 5.7E-10 86.3 15.1 179 183-388 16-218 (824)
71 PRK14952 DNA polymerase III su 98.2 3.9E-05 8.6E-10 81.7 15.2 189 182-386 13-214 (584)
72 PRK14959 DNA polymerase III su 98.2 3.2E-05 7E-10 82.2 14.0 197 183-395 17-225 (624)
73 PRK14950 DNA polymerase III su 98.1 5.7E-05 1.2E-09 81.5 16.2 193 182-389 16-219 (585)
74 PF00308 Bac_DnaA: Bacterial d 98.1 4.1E-05 8.9E-10 71.8 13.0 160 208-389 33-206 (219)
75 PRK14087 dnaA chromosomal repl 98.1 2.8E-05 6.1E-10 80.8 12.9 167 209-391 141-319 (450)
76 TIGR03345 VI_ClpV1 type VI sec 98.1 4.5E-05 9.7E-10 85.4 15.2 152 182-357 187-362 (852)
77 PRK11331 5-methylcytosine-spec 98.1 1.1E-05 2.3E-10 82.1 9.3 119 182-312 175-297 (459)
78 PRK14970 DNA polymerase III su 98.1 6.4E-05 1.4E-09 76.7 14.7 180 182-387 17-205 (367)
79 PF13855 LRR_8: Leucine rich r 98.1 3.8E-06 8.2E-11 61.5 3.8 59 445-506 1-60 (61)
80 TIGR02639 ClpA ATP-dependent C 98.1 3.4E-05 7.3E-10 85.6 12.9 156 182-358 182-358 (731)
81 PRK03992 proteasome-activating 98.1 2.8E-05 6E-10 79.6 11.1 178 182-385 131-337 (389)
82 CHL00181 cbbX CbbX; Provisiona 98.1 0.00024 5.1E-09 69.5 17.0 135 209-359 59-210 (287)
83 COG2255 RuvB Holliday junction 98.0 5E-05 1.1E-09 71.4 11.3 175 182-389 26-221 (332)
84 PRK14953 DNA polymerase III su 98.0 0.00017 3.8E-09 75.6 16.6 181 183-390 17-219 (486)
85 PHA02544 44 clamp loader, smal 98.0 5.5E-05 1.2E-09 75.5 12.4 148 182-356 21-171 (316)
86 PRK08451 DNA polymerase III su 98.0 0.00013 2.8E-09 76.7 15.2 179 182-390 14-217 (535)
87 PRK14954 DNA polymerase III su 98.0 0.00012 2.5E-09 78.7 15.0 196 182-386 16-223 (620)
88 KOG2543 Origin recognition com 98.0 0.00011 2.4E-09 71.8 13.2 166 181-357 5-192 (438)
89 PRK07133 DNA polymerase III su 98.0 0.00015 3.2E-09 78.5 15.5 187 183-387 19-215 (725)
90 CHL00095 clpC Clp protease ATP 98.0 8.5E-05 1.8E-09 83.5 14.0 154 182-356 179-352 (821)
91 PRK14948 DNA polymerase III su 98.0 0.00019 4.1E-09 77.5 16.0 193 183-389 17-220 (620)
92 TIGR02881 spore_V_K stage V sp 98.0 9.7E-05 2.1E-09 71.5 12.3 161 183-359 7-192 (261)
93 PRK14971 DNA polymerase III su 98.0 0.00016 3.4E-09 78.1 15.1 176 182-388 17-219 (614)
94 KOG0617 Ras suppressor protein 97.9 7.5E-07 1.6E-11 77.0 -2.3 85 418-506 99-184 (264)
95 TIGR00362 DnaA chromosomal rep 97.9 0.00024 5.2E-09 73.5 15.6 180 209-410 136-336 (405)
96 PRK14965 DNA polymerase III su 97.9 0.0001 2.2E-09 79.3 13.0 189 182-386 16-215 (576)
97 PRK06305 DNA polymerase III su 97.9 0.00016 3.4E-09 75.4 13.8 177 182-386 17-217 (451)
98 PF05673 DUF815: Protein of un 97.9 0.00011 2.4E-09 68.5 10.7 125 180-331 25-154 (249)
99 PF00004 AAA: ATPase family as 97.9 3.2E-05 6.9E-10 66.2 6.8 21 212-232 1-21 (132)
100 TIGR02880 cbbX_cfxQ probable R 97.9 0.00017 3.6E-09 70.6 12.0 133 211-359 60-209 (284)
101 PRK14088 dnaA chromosomal repl 97.8 0.00017 3.8E-09 74.9 12.2 159 209-388 130-302 (440)
102 PRK12422 chromosomal replicati 97.8 0.00016 3.4E-09 75.1 11.7 154 209-384 141-306 (445)
103 PRK06620 hypothetical protein; 97.8 0.0002 4.3E-09 66.9 11.3 135 210-389 45-187 (214)
104 PRK06647 DNA polymerase III su 97.8 0.00049 1.1E-08 73.5 15.6 190 183-388 17-217 (563)
105 PRK14086 dnaA chromosomal repl 97.8 0.00052 1.1E-08 72.9 15.5 155 210-386 315-483 (617)
106 PRK08116 hypothetical protein; 97.8 8.3E-05 1.8E-09 72.0 8.7 104 210-328 115-221 (268)
107 KOG0989 Replication factor C, 97.8 8.2E-05 1.8E-09 70.7 8.1 183 182-385 36-224 (346)
108 PRK07399 DNA polymerase III su 97.8 0.00058 1.3E-08 67.6 14.6 195 183-391 5-221 (314)
109 PRK00149 dnaA chromosomal repl 97.8 0.0005 1.1E-08 72.1 14.9 181 208-410 147-348 (450)
110 PRK05563 DNA polymerase III su 97.8 0.00072 1.6E-08 72.4 15.9 191 182-388 16-217 (559)
111 PRK05707 DNA polymerase III su 97.8 0.00052 1.1E-08 68.3 13.8 97 287-391 105-203 (328)
112 COG3903 Predicted ATPase [Gene 97.7 2.1E-05 4.6E-10 77.8 3.6 181 208-398 13-196 (414)
113 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00031 6.8E-09 79.2 13.3 153 182-357 173-348 (852)
114 PRK11034 clpA ATP-dependent Cl 97.7 0.00033 7.1E-09 77.2 12.7 156 182-358 186-362 (758)
115 KOG0472 Leucine-rich repeat pr 97.7 1.4E-05 3E-10 78.3 1.4 85 420-507 434-540 (565)
116 smart00382 AAA ATPases associa 97.7 0.00016 3.6E-09 62.1 8.2 88 210-301 3-91 (148)
117 TIGR03689 pup_AAA proteasome A 97.7 0.00038 8.1E-09 72.9 12.1 167 182-358 182-378 (512)
118 COG3267 ExeA Type II secretory 97.7 0.0019 4.1E-08 60.2 15.2 181 207-392 49-246 (269)
119 KOG4658 Apoptotic ATPase [Sign 97.7 1.3E-05 2.8E-10 89.5 1.1 83 420-505 570-652 (889)
120 PRK10865 protein disaggregatio 97.7 0.00074 1.6E-08 76.0 14.9 45 182-232 178-222 (857)
121 PF13855 LRR_8: Leucine rich r 97.6 6.4E-05 1.4E-09 54.9 4.0 59 421-482 1-60 (61)
122 PF14516 AAA_35: AAA-like doma 97.6 0.0018 4E-08 64.8 15.2 200 182-398 11-246 (331)
123 COG0593 DnaA ATPase involved i 97.6 0.0021 4.6E-08 64.9 15.5 135 208-359 112-258 (408)
124 TIGR03346 chaperone_ClpB ATP-d 97.6 0.0012 2.5E-08 74.7 15.2 137 182-327 565-717 (852)
125 TIGR03345 VI_ClpV1 type VI sec 97.6 0.0008 1.7E-08 75.6 13.7 206 182-397 566-825 (852)
126 PRK15386 type III secretion pr 97.6 4.3E-05 9.2E-10 77.0 3.2 77 422-508 73-169 (426)
127 PLN00113 leucine-rich repeat r 97.6 6.6E-05 1.4E-09 86.8 5.1 86 420-507 163-248 (968)
128 PRK10787 DNA-binding ATP-depen 97.6 0.0015 3.1E-08 72.7 15.2 167 181-359 321-507 (784)
129 PLN00113 leucine-rich repeat r 97.6 7E-05 1.5E-09 86.7 5.2 86 420-507 187-272 (968)
130 PRK10865 protein disaggregatio 97.6 0.00057 1.2E-08 76.9 12.2 138 182-327 568-720 (857)
131 TIGR00602 rad24 checkpoint pro 97.6 0.00041 8.8E-09 74.6 10.3 50 182-232 84-133 (637)
132 PRK12377 putative replication 97.5 0.00017 3.8E-09 68.6 6.7 102 209-327 101-205 (248)
133 PTZ00454 26S protease regulato 97.5 0.0014 3E-08 67.1 13.6 181 182-387 145-353 (398)
134 PRK06090 DNA polymerase III su 97.5 0.0025 5.3E-08 63.0 14.8 93 287-391 107-201 (319)
135 COG1373 Predicted ATPase (AAA+ 97.5 0.0011 2.3E-08 68.1 12.8 117 211-352 39-161 (398)
136 TIGR00763 lon ATP-dependent pr 97.5 0.0044 9.5E-08 69.4 18.6 165 182-358 320-505 (775)
137 PRK08118 topology modulation p 97.5 5.1E-05 1.1E-09 68.0 2.7 34 211-244 3-37 (167)
138 TIGR02639 ClpA ATP-dependent C 97.5 0.00085 1.9E-08 74.6 12.9 164 182-358 454-662 (731)
139 COG0466 Lon ATP-dependent Lon 97.5 0.0028 6E-08 67.2 15.4 164 181-359 322-509 (782)
140 PF13177 DNA_pol3_delta2: DNA 97.5 0.0012 2.7E-08 58.7 11.3 138 187-346 2-162 (162)
141 PRK08058 DNA polymerase III su 97.5 0.002 4.4E-08 64.5 13.5 148 183-356 6-180 (329)
142 PTZ00361 26 proteosome regulat 97.5 0.0003 6.6E-09 72.4 7.7 157 182-358 183-367 (438)
143 PRK08769 DNA polymerase III su 97.5 0.0031 6.8E-08 62.3 14.5 95 287-391 112-208 (319)
144 CHL00176 ftsH cell division pr 97.4 0.0011 2.4E-08 71.7 11.9 179 182-385 183-388 (638)
145 PRK08181 transposase; Validate 97.4 0.00035 7.6E-09 67.3 7.2 101 210-328 107-209 (269)
146 PF12799 LRR_4: Leucine Rich r 97.4 0.00011 2.3E-09 49.6 2.5 34 472-506 2-35 (44)
147 TIGR01241 FtsH_fam ATP-depende 97.4 0.0015 3.2E-08 69.5 11.8 179 182-385 55-260 (495)
148 PF04665 Pox_A32: Poxvirus A32 97.4 0.00039 8.3E-09 65.3 6.3 37 209-247 13-49 (241)
149 PRK10536 hypothetical protein; 97.3 0.0021 4.6E-08 60.7 11.1 136 182-329 55-214 (262)
150 KOG0617 Ras suppressor protein 97.3 4.1E-05 8.9E-10 66.5 -0.5 81 420-505 32-112 (264)
151 PRK06526 transposase; Provisio 97.3 0.00032 6.9E-09 67.2 5.4 101 209-328 98-201 (254)
152 PRK09183 transposase/IS protei 97.3 0.00067 1.5E-08 65.4 7.6 102 209-328 102-206 (259)
153 PLN03150 hypothetical protein; 97.3 0.00028 6E-09 76.9 5.2 79 425-505 422-500 (623)
154 PF01695 IstB_IS21: IstB-like 97.3 0.00033 7.1E-09 63.4 4.8 101 209-328 47-150 (178)
155 TIGR02640 gas_vesic_GvpN gas v 97.3 0.003 6.4E-08 61.1 11.7 140 210-357 22-197 (262)
156 PRK06921 hypothetical protein; 97.3 0.0011 2.5E-08 64.0 8.7 101 208-327 116-224 (266)
157 PRK06964 DNA polymerase III su 97.3 0.0047 1E-07 61.7 13.2 93 287-391 131-225 (342)
158 PRK08939 primosomal protein Dn 97.3 0.0014 3.1E-08 64.5 9.5 122 186-327 135-260 (306)
159 PRK06871 DNA polymerase III su 97.3 0.0085 1.8E-07 59.4 14.8 94 287-389 106-201 (325)
160 COG1222 RPT1 ATP-dependent 26S 97.2 0.0043 9.3E-08 60.6 12.0 188 183-396 152-372 (406)
161 PF07728 AAA_5: AAA domain (dy 97.2 9.7E-05 2.1E-09 64.0 0.7 88 212-312 2-89 (139)
162 PRK06835 DNA replication prote 97.2 0.00061 1.3E-08 67.7 6.4 102 210-327 184-288 (329)
163 PRK07261 topology modulation p 97.2 0.00078 1.7E-08 60.6 6.5 22 211-232 2-23 (171)
164 PRK07952 DNA replication prote 97.2 0.002 4.2E-08 61.3 9.3 103 209-327 99-204 (244)
165 PRK15386 type III secretion pr 97.2 0.00036 7.7E-09 70.4 4.4 64 421-492 52-115 (426)
166 COG1484 DnaC DNA replication p 97.2 0.00076 1.6E-08 64.7 6.4 82 208-306 104-185 (254)
167 PRK13531 regulatory ATPase Rav 97.2 0.0012 2.7E-08 68.0 8.3 41 183-231 21-61 (498)
168 PF07693 KAP_NTPase: KAP famil 97.2 0.017 3.7E-07 57.8 16.3 41 189-232 3-43 (325)
169 COG0470 HolB ATPase involved i 97.1 0.002 4.4E-08 64.4 9.5 144 183-346 2-169 (325)
170 KOG0991 Replication factor C, 97.1 0.0013 2.8E-08 60.2 6.9 44 182-231 27-70 (333)
171 PRK11034 clpA ATP-dependent Cl 97.1 0.0035 7.5E-08 69.2 11.7 133 183-326 459-606 (758)
172 KOG0444 Cytoskeletal regulator 97.1 0.00011 2.4E-09 75.9 0.1 90 420-513 102-191 (1255)
173 CHL00095 clpC Clp protease ATP 97.1 0.0014 3E-08 73.8 8.8 136 182-327 509-661 (821)
174 PF12799 LRR_4: Leucine Rich r 97.1 0.00037 8E-09 46.9 2.5 40 445-488 1-40 (44)
175 PRK04132 replication factor C 97.1 0.0047 1E-07 68.5 12.4 154 217-390 574-730 (846)
176 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00045 9.8E-09 68.6 4.1 50 183-232 52-101 (361)
177 KOG0741 AAA+-type ATPase [Post 97.1 0.017 3.6E-07 59.2 15.0 149 207-381 536-704 (744)
178 TIGR02237 recomb_radB DNA repa 97.1 0.0022 4.8E-08 59.7 8.4 49 207-258 10-58 (209)
179 COG0542 clpA ATP-binding subun 97.1 0.0012 2.7E-08 71.5 7.3 134 182-326 491-642 (786)
180 KOG0444 Cytoskeletal regulator 97.1 0.00013 2.8E-09 75.4 -0.3 106 400-509 263-376 (1255)
181 PRK09361 radB DNA repair and r 97.0 0.0036 7.7E-08 59.1 9.3 47 207-256 21-67 (225)
182 PHA00729 NTP-binding motif con 97.0 0.0082 1.8E-07 55.9 11.3 25 208-232 16-40 (226)
183 COG0542 clpA ATP-binding subun 97.0 0.002 4.3E-08 69.9 8.2 153 182-356 170-344 (786)
184 PRK05541 adenylylsulfate kinas 97.0 0.0029 6.3E-08 57.2 8.1 37 207-245 5-41 (176)
185 KOG2228 Origin recognition com 97.0 0.0066 1.4E-07 58.8 10.6 174 182-359 24-220 (408)
186 PRK07993 DNA polymerase III su 97.0 0.018 3.9E-07 57.6 14.4 95 286-389 106-202 (334)
187 PRK04296 thymidine kinase; Pro 97.0 0.0013 2.8E-08 60.3 5.8 112 210-328 3-116 (190)
188 PRK12608 transcription termina 97.0 0.004 8.6E-08 62.3 9.3 102 191-298 120-230 (380)
189 PLN03150 hypothetical protein; 97.0 0.00085 1.8E-08 73.2 5.1 88 420-509 441-529 (623)
190 TIGR01243 CDC48 AAA family ATP 96.9 0.0091 2E-07 66.7 12.8 180 182-386 453-658 (733)
191 PF10443 RNA12: RNA12 protein; 96.9 0.019 4.2E-07 58.0 13.7 112 289-401 149-288 (431)
192 PF14532 Sigma54_activ_2: Sigm 96.9 0.00069 1.5E-08 58.6 3.2 108 185-328 1-110 (138)
193 KOG2004 Mitochondrial ATP-depe 96.9 0.017 3.6E-07 61.4 13.2 50 182-231 411-460 (906)
194 KOG1969 DNA replication checkp 96.9 0.0019 4.2E-08 68.3 6.4 78 206-301 323-400 (877)
195 PF00158 Sigma54_activat: Sigm 96.9 0.0021 4.6E-08 57.5 5.9 45 184-232 1-45 (168)
196 COG1223 Predicted ATPase (AAA+ 96.9 0.008 1.7E-07 56.1 9.5 178 182-385 121-319 (368)
197 cd01394 radB RadB. The archaea 96.8 0.0073 1.6E-07 56.7 9.7 44 207-252 17-60 (218)
198 COG2812 DnaX DNA polymerase II 96.8 0.0062 1.4E-07 63.5 9.9 164 183-358 17-191 (515)
199 KOG0472 Leucine-rich repeat pr 96.8 0.00023 5E-09 70.0 -0.6 81 423-509 230-311 (565)
200 cd01393 recA_like RecA is a b 96.8 0.0084 1.8E-07 56.6 10.1 89 207-298 17-124 (226)
201 KOG2035 Replication factor C, 96.8 0.0061 1.3E-07 57.4 8.6 207 184-412 15-259 (351)
202 PF13207 AAA_17: AAA domain; P 96.8 0.00082 1.8E-08 56.6 2.7 21 211-231 1-21 (121)
203 KOG1514 Origin recognition com 96.8 0.036 7.8E-07 58.8 15.1 202 183-391 397-621 (767)
204 PRK08699 DNA polymerase III su 96.8 0.01 2.3E-07 59.0 10.9 71 287-357 112-184 (325)
205 TIGR01243 CDC48 AAA family ATP 96.8 0.0075 1.6E-07 67.3 10.8 178 183-385 179-381 (733)
206 TIGR02902 spore_lonB ATP-depen 96.8 0.0029 6.3E-08 67.5 7.2 44 183-232 66-109 (531)
207 CHL00195 ycf46 Ycf46; Provisio 96.8 0.012 2.6E-07 61.7 11.5 181 183-387 229-431 (489)
208 PF08423 Rad51: Rad51; InterP 96.7 0.008 1.7E-07 57.8 8.9 89 208-297 37-142 (256)
209 PF14580 LRR_9: Leucine-rich r 96.7 0.001 2.2E-08 59.7 2.4 82 420-507 41-125 (175)
210 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.01 2.2E-07 56.4 9.5 90 207-297 17-124 (235)
211 TIGR03499 FlhF flagellar biosy 96.7 0.0091 2E-07 58.3 9.3 88 208-297 193-281 (282)
212 PRK11889 flhF flagellar biosyn 96.7 0.017 3.8E-07 58.0 11.2 90 208-299 240-331 (436)
213 KOG0924 mRNA splicing factor A 96.7 0.013 2.9E-07 61.4 10.6 132 208-343 370-528 (1042)
214 COG2884 FtsE Predicted ATPase 96.6 0.02 4.4E-07 51.1 10.1 125 208-335 27-204 (223)
215 PRK13695 putative NTPase; Prov 96.6 0.0017 3.8E-08 58.6 3.7 22 211-232 2-23 (174)
216 PF00448 SRP54: SRP54-type pro 96.6 0.0095 2.1E-07 54.8 8.6 89 209-299 1-94 (196)
217 TIGR02974 phageshock_pspF psp 96.6 0.0072 1.6E-07 60.4 8.4 45 184-232 1-45 (329)
218 PF02562 PhoH: PhoH-like prote 96.6 0.0034 7.4E-08 57.7 5.5 132 186-329 4-157 (205)
219 PRK06696 uridine kinase; Valid 96.6 0.0024 5.3E-08 60.2 4.7 43 187-232 3-45 (223)
220 TIGR02238 recomb_DMC1 meiotic 96.6 0.011 2.4E-07 58.4 9.5 59 207-266 94-156 (313)
221 cd00983 recA RecA is a bacter 96.6 0.0091 2E-07 58.9 8.6 85 207-298 53-143 (325)
222 COG2607 Predicted ATPase (AAA+ 96.6 0.0096 2.1E-07 55.0 8.0 107 182-315 60-167 (287)
223 PRK15455 PrkA family serine pr 96.6 0.0016 3.5E-08 68.1 3.2 49 183-231 77-125 (644)
224 PF14580 LRR_9: Leucine-rich r 96.5 0.0013 2.8E-08 59.0 2.2 79 422-507 20-100 (175)
225 TIGR01817 nifA Nif-specific re 96.5 0.011 2.4E-07 63.4 9.7 49 180-232 194-242 (534)
226 cd03214 ABC_Iron-Siderophores_ 96.5 0.021 4.4E-07 51.9 10.0 121 208-332 24-162 (180)
227 PF07724 AAA_2: AAA domain (Cd 96.5 0.0015 3.2E-08 58.7 2.2 40 208-249 2-42 (171)
228 cd01120 RecA-like_NTPases RecA 96.5 0.018 3.8E-07 50.8 9.3 40 211-252 1-40 (165)
229 cd01133 F1-ATPase_beta F1 ATP 96.5 0.013 2.7E-07 56.4 8.6 88 208-297 68-172 (274)
230 cd03228 ABCC_MRP_Like The MRP 96.5 0.013 2.8E-07 52.7 8.3 119 208-333 27-160 (171)
231 KOG0744 AAA+-type ATPase [Post 96.4 0.034 7.4E-07 53.7 11.0 80 209-298 177-260 (423)
232 cd03247 ABCC_cytochrome_bd The 96.4 0.012 2.5E-07 53.4 7.8 119 208-332 27-161 (178)
233 KOG1259 Nischarin, modulator o 96.4 0.00044 9.5E-09 65.5 -1.7 42 465-507 368-411 (490)
234 TIGR02012 tigrfam_recA protein 96.4 0.014 3E-07 57.6 8.7 85 207-298 53-143 (321)
235 KOG0733 Nuclear AAA ATPase (VC 96.4 0.014 3E-07 60.8 8.5 97 183-299 191-293 (802)
236 PLN03187 meiotic recombination 96.4 0.02 4.4E-07 57.2 9.5 59 207-266 124-186 (344)
237 KOG0618 Serine/threonine phosp 96.4 0.00087 1.9E-08 72.6 -0.1 78 423-505 47-124 (1081)
238 cd01131 PilT Pilus retraction 96.4 0.0052 1.1E-07 56.7 5.0 109 210-332 2-113 (198)
239 PF13604 AAA_30: AAA domain; P 96.4 0.0041 8.9E-08 57.3 4.4 106 210-327 19-130 (196)
240 PRK11608 pspF phage shock prot 96.3 0.0083 1.8E-07 60.0 6.8 46 182-231 6-51 (326)
241 COG4608 AppF ABC-type oligopep 96.3 0.02 4.4E-07 54.2 8.9 126 208-336 38-178 (268)
242 TIGR02239 recomb_RAD51 DNA rep 96.3 0.026 5.6E-07 56.0 10.1 59 207-266 94-156 (316)
243 cd03238 ABC_UvrA The excision 96.3 0.016 3.5E-07 52.2 7.9 115 208-332 20-153 (176)
244 PRK15429 formate hydrogenlyase 96.3 0.012 2.7E-07 65.1 8.6 134 182-327 376-520 (686)
245 PF00485 PRK: Phosphoribulokin 96.3 0.021 4.5E-07 52.5 8.8 81 211-292 1-87 (194)
246 PRK09354 recA recombinase A; P 96.3 0.02 4.4E-07 57.0 8.9 85 207-298 58-148 (349)
247 PHA02244 ATPase-like protein 96.3 0.015 3.3E-07 57.9 7.9 22 211-232 121-142 (383)
248 COG1136 SalX ABC-type antimicr 96.2 0.046 9.9E-07 50.9 10.6 62 274-335 146-210 (226)
249 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.03 6.5E-07 48.7 8.9 106 208-332 25-131 (144)
250 PRK12727 flagellar biosynthesi 96.2 0.025 5.3E-07 59.2 9.6 90 208-299 349-439 (559)
251 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.025 5.3E-07 49.8 8.2 116 210-328 3-138 (159)
252 PRK14722 flhF flagellar biosyn 96.2 0.02 4.3E-07 57.8 8.4 91 208-300 136-227 (374)
253 KOG0734 AAA+-type ATPase conta 96.2 0.051 1.1E-06 55.9 11.2 51 183-233 305-361 (752)
254 PRK12723 flagellar biosynthesi 96.2 0.034 7.4E-07 56.5 10.2 91 208-300 173-266 (388)
255 KOG1532 GTPase XAB1, interacts 96.2 0.023 4.9E-07 53.5 8.0 62 206-269 16-88 (366)
256 COG1875 NYN ribonuclease and A 96.1 0.009 1.9E-07 58.5 5.5 136 184-328 226-388 (436)
257 PRK15370 E3 ubiquitin-protein 96.1 0.0062 1.3E-07 67.3 5.1 74 421-505 241-314 (754)
258 PLN03186 DNA repair protein RA 96.1 0.036 7.8E-07 55.4 10.0 59 207-266 121-183 (342)
259 cd03223 ABCD_peroxisomal_ALDP 96.1 0.037 7.9E-07 49.5 9.2 116 208-331 26-151 (166)
260 cd03222 ABC_RNaseL_inhibitor T 96.1 0.025 5.4E-07 51.1 8.0 104 208-332 24-136 (177)
261 KOG0735 AAA+-type ATPase [Post 96.1 0.054 1.2E-06 57.6 11.3 133 208-358 430-586 (952)
262 PRK06067 flagellar accessory p 96.1 0.026 5.7E-07 53.6 8.7 87 207-298 23-130 (234)
263 cd02025 PanK Pantothenate kina 96.1 0.022 4.9E-07 53.4 8.0 73 211-286 1-76 (220)
264 PRK05703 flhF flagellar biosyn 96.1 0.034 7.3E-07 57.6 9.9 89 209-299 221-310 (424)
265 TIGR02236 recomb_radA DNA repa 96.1 0.044 9.6E-07 54.4 10.4 58 207-265 93-154 (310)
266 PRK04301 radA DNA repair and r 96.1 0.052 1.1E-06 54.1 10.9 58 207-265 100-161 (317)
267 cd03216 ABC_Carb_Monos_I This 96.1 0.015 3.2E-07 51.9 6.2 118 208-332 25-146 (163)
268 PRK12724 flagellar biosynthesi 96.1 0.021 4.6E-07 58.0 8.0 24 208-231 222-245 (432)
269 KOG0730 AAA+-type ATPase [Post 96.0 0.058 1.3E-06 57.0 11.1 157 183-359 435-616 (693)
270 COG0468 RecA RecA/RadA recombi 96.0 0.034 7.3E-07 53.7 8.9 89 207-297 58-150 (279)
271 PTZ00035 Rad51 protein; Provis 96.0 0.051 1.1E-06 54.4 10.5 59 207-266 116-178 (337)
272 PRK14974 cell division protein 96.0 0.055 1.2E-06 54.0 10.6 91 207-300 138-234 (336)
273 PF12775 AAA_7: P-loop contain 96.0 0.0099 2.2E-07 57.6 5.2 95 192-306 23-118 (272)
274 PRK05800 cobU adenosylcobinami 96.0 0.0067 1.5E-07 54.4 3.7 80 211-297 3-85 (170)
275 COG1618 Predicted nucleotide k 96.0 0.0074 1.6E-07 52.2 3.6 24 209-232 5-28 (179)
276 PRK07667 uridine kinase; Provi 96.0 0.0099 2.1E-07 54.6 4.8 38 191-232 3-40 (193)
277 TIGR00554 panK_bact pantothena 95.9 0.041 8.9E-07 53.6 9.2 79 207-288 60-141 (290)
278 PF13238 AAA_18: AAA domain; P 95.9 0.0049 1.1E-07 52.2 2.5 21 212-232 1-21 (129)
279 KOG0733 Nuclear AAA ATPase (VC 95.9 0.056 1.2E-06 56.5 10.4 157 208-387 544-720 (802)
280 COG1121 ZnuC ABC-type Mn/Zn tr 95.9 0.054 1.2E-06 51.3 9.6 122 209-332 30-203 (254)
281 PRK09270 nucleoside triphospha 95.9 0.034 7.5E-07 52.6 8.5 25 207-231 31-55 (229)
282 PRK05022 anaerobic nitric oxid 95.9 0.021 4.5E-07 60.9 7.6 135 181-327 186-331 (509)
283 PRK05439 pantothenate kinase; 95.9 0.046 9.9E-07 53.8 9.3 80 206-289 83-166 (311)
284 KOG0731 AAA+-type ATPase conta 95.9 0.069 1.5E-06 58.0 11.3 181 183-388 312-521 (774)
285 TIGR00235 udk uridine kinase. 95.9 0.0075 1.6E-07 56.1 3.7 25 207-231 4-28 (207)
286 TIGR00959 ffh signal recogniti 95.9 0.074 1.6E-06 54.9 11.2 25 207-231 97-121 (428)
287 COG0572 Udk Uridine kinase [Nu 95.9 0.018 3.9E-07 53.0 6.0 78 207-289 6-85 (218)
288 PF00560 LRR_1: Leucine Rich R 95.9 0.0033 7.2E-08 35.3 0.8 21 472-493 1-21 (22)
289 cd03281 ABC_MSH5_euk MutS5 hom 95.8 0.016 3.4E-07 54.1 5.7 121 209-334 29-160 (213)
290 KOG3864 Uncharacterized conser 95.8 0.0011 2.3E-08 59.5 -2.1 67 440-507 120-188 (221)
291 PRK08233 hypothetical protein; 95.8 0.0073 1.6E-07 54.8 3.3 24 209-232 3-26 (182)
292 cd03115 SRP The signal recogni 95.8 0.05 1.1E-06 48.9 8.7 21 211-231 2-22 (173)
293 PRK05480 uridine/cytidine kina 95.8 0.0076 1.6E-07 56.2 3.4 26 207-232 4-29 (209)
294 PLN00020 ribulose bisphosphate 95.8 0.019 4E-07 57.1 6.1 26 207-232 146-171 (413)
295 COG0563 Adk Adenylate kinase a 95.8 0.021 4.5E-07 51.6 6.0 22 211-232 2-23 (178)
296 PRK00889 adenylylsulfate kinas 95.8 0.049 1.1E-06 49.1 8.6 25 208-232 3-27 (175)
297 PF08298 AAA_PrkA: PrkA AAA do 95.8 0.011 2.3E-07 58.4 4.4 51 181-231 60-110 (358)
298 PRK10733 hflB ATP-dependent me 95.8 0.068 1.5E-06 58.6 11.0 129 210-358 186-335 (644)
299 TIGR00064 ftsY signal recognit 95.8 0.074 1.6E-06 51.6 10.1 90 207-299 70-165 (272)
300 KOG0532 Leucine-rich repeat (L 95.8 0.002 4.3E-08 66.4 -0.8 68 435-507 179-246 (722)
301 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.08 1.7E-06 50.3 10.2 49 207-259 19-67 (237)
302 cd03246 ABCC_Protease_Secretio 95.7 0.034 7.4E-07 50.0 7.3 121 208-332 27-160 (173)
303 cd01125 repA Hexameric Replica 95.7 0.086 1.9E-06 50.2 10.4 21 211-231 3-23 (239)
304 PF01583 APS_kinase: Adenylyls 95.7 0.016 3.4E-07 50.8 4.7 36 209-246 2-37 (156)
305 PRK00771 signal recognition pa 95.7 0.066 1.4E-06 55.4 10.0 88 208-298 94-185 (437)
306 PTZ00301 uridine kinase; Provi 95.7 0.014 3E-07 54.3 4.6 23 209-231 3-25 (210)
307 cd01122 GP4d_helicase GP4d_hel 95.7 0.081 1.7E-06 51.4 10.2 53 208-263 29-81 (271)
308 PF12061 DUF3542: Protein of u 95.7 0.026 5.6E-07 53.9 6.2 77 4-85 296-373 (402)
309 PRK10867 signal recognition pa 95.6 0.067 1.5E-06 55.2 9.7 25 207-231 98-122 (433)
310 PRK12726 flagellar biosynthesi 95.6 0.062 1.3E-06 53.9 9.0 91 207-299 204-296 (407)
311 PRK15387 E3 ubiquitin-protein 95.6 0.011 2.4E-07 65.3 4.1 76 421-507 382-457 (788)
312 cd03282 ABC_MSH4_euk MutS4 hom 95.6 0.021 4.6E-07 52.8 5.5 121 208-335 28-158 (204)
313 cd02019 NK Nucleoside/nucleoti 95.6 0.0094 2E-07 44.6 2.5 22 211-232 1-22 (69)
314 PF13671 AAA_33: AAA domain; P 95.6 0.0097 2.1E-07 51.5 3.0 21 211-231 1-21 (143)
315 COG1102 Cmk Cytidylate kinase 95.6 0.027 5.8E-07 48.9 5.4 43 211-266 2-44 (179)
316 PF00154 RecA: recA bacterial 95.6 0.038 8.2E-07 54.4 7.3 85 207-298 51-141 (322)
317 cd02027 APSK Adenosine 5'-phos 95.6 0.036 7.8E-07 48.5 6.5 21 211-231 1-21 (149)
318 COG0396 sufC Cysteine desulfur 95.5 0.099 2.2E-06 48.3 9.3 64 277-340 151-216 (251)
319 PRK06762 hypothetical protein; 95.5 0.011 2.3E-07 52.9 3.1 23 209-231 2-24 (166)
320 TIGR02858 spore_III_AA stage I 95.5 0.067 1.5E-06 51.7 8.7 127 191-332 98-233 (270)
321 cd03230 ABC_DR_subfamily_A Thi 95.5 0.069 1.5E-06 48.0 8.4 119 208-332 25-159 (173)
322 PF00006 ATP-synt_ab: ATP synt 95.5 0.054 1.2E-06 50.4 7.6 84 208-297 14-114 (215)
323 cd01121 Sms Sms (bacterial rad 95.4 0.073 1.6E-06 54.0 8.9 84 207-298 80-168 (372)
324 PRK06547 hypothetical protein; 95.4 0.022 4.7E-07 51.2 4.6 26 207-232 13-38 (172)
325 PTZ00494 tuzin-like protein; P 95.4 0.3 6.5E-06 49.7 12.7 168 179-358 368-544 (664)
326 PRK03846 adenylylsulfate kinas 95.3 0.047 1E-06 50.4 6.9 25 207-231 22-46 (198)
327 PTZ00088 adenylate kinase 1; P 95.3 0.02 4.2E-07 54.0 4.3 21 211-231 8-28 (229)
328 PRK03839 putative kinase; Prov 95.3 0.012 2.7E-07 53.3 2.9 22 211-232 2-23 (180)
329 PRK07132 DNA polymerase III su 95.3 0.28 6.2E-06 48.1 12.5 133 208-356 17-160 (299)
330 COG0464 SpoVK ATPases of the A 95.3 0.078 1.7E-06 56.5 9.3 133 207-359 274-424 (494)
331 PRK15370 E3 ubiquitin-protein 95.3 0.025 5.4E-07 62.6 5.6 80 416-506 215-294 (754)
332 cd03244 ABCC_MRP_domain2 Domai 95.3 0.15 3.2E-06 47.9 10.1 24 208-231 29-52 (221)
333 cd00267 ABC_ATPase ABC (ATP-bi 95.3 0.04 8.6E-07 48.7 5.9 119 209-333 25-145 (157)
334 cd02028 UMPK_like Uridine mono 95.3 0.032 6.8E-07 50.6 5.3 22 211-232 1-22 (179)
335 TIGR01360 aden_kin_iso1 adenyl 95.2 0.015 3.3E-07 53.0 3.2 24 208-231 2-25 (188)
336 PF13504 LRR_7: Leucine rich r 95.2 0.011 2.5E-07 30.7 1.3 17 471-488 1-17 (17)
337 KOG1051 Chaperone HSP104 and r 95.2 0.11 2.5E-06 57.6 10.2 120 183-313 563-685 (898)
338 PRK04328 hypothetical protein; 95.2 0.12 2.6E-06 49.5 9.4 43 207-251 21-63 (249)
339 cd03369 ABCC_NFT1 Domain 2 of 95.2 0.21 4.6E-06 46.3 10.8 24 208-231 33-56 (207)
340 PRK08533 flagellar accessory p 95.2 0.1 2.2E-06 49.4 8.7 50 207-260 22-71 (230)
341 PRK14723 flhF flagellar biosyn 95.2 0.18 3.8E-06 55.5 11.5 24 209-232 185-208 (767)
342 PRK10820 DNA-binding transcrip 95.2 0.037 7.9E-07 59.1 6.3 46 182-231 204-249 (520)
343 PF00910 RNA_helicase: RNA hel 95.2 0.011 2.5E-07 48.5 1.9 21 212-232 1-21 (107)
344 COG1126 GlnQ ABC-type polar am 95.2 0.17 3.8E-06 46.3 9.5 125 208-335 27-203 (240)
345 COG1428 Deoxynucleoside kinase 95.1 0.014 3.1E-07 53.1 2.6 24 209-232 4-27 (216)
346 KOG0728 26S proteasome regulat 95.1 0.34 7.4E-06 45.2 11.5 155 183-358 147-331 (404)
347 TIGR01069 mutS2 MutS2 family p 95.1 0.019 4E-07 63.9 4.1 23 209-231 322-344 (771)
348 KOG0618 Serine/threonine phosp 95.1 0.0041 8.8E-08 67.6 -1.1 84 420-507 382-488 (1081)
349 TIGR01818 ntrC nitrogen regula 95.1 0.074 1.6E-06 56.1 8.4 134 183-328 135-279 (463)
350 PRK14721 flhF flagellar biosyn 95.1 0.14 2.9E-06 52.7 9.8 24 208-231 190-213 (420)
351 PRK06731 flhF flagellar biosyn 95.1 0.16 3.4E-06 49.1 9.7 91 208-300 74-166 (270)
352 PRK11388 DNA-binding transcrip 95.0 0.054 1.2E-06 59.6 7.4 131 182-327 325-466 (638)
353 cd02023 UMPK Uridine monophosp 95.0 0.014 3.1E-07 53.8 2.4 21 211-231 1-21 (198)
354 COG4618 ArpD ABC-type protease 95.0 0.15 3.2E-06 52.5 9.6 24 208-231 361-384 (580)
355 PF03193 DUF258: Protein of un 95.0 0.035 7.5E-07 48.9 4.6 35 189-232 24-58 (161)
356 PRK06995 flhF flagellar biosyn 95.0 0.12 2.6E-06 54.0 9.3 24 209-232 256-279 (484)
357 PRK04040 adenylate kinase; Pro 95.0 0.018 3.9E-07 52.6 3.0 23 209-231 2-24 (188)
358 TIGR00150 HI0065_YjeE ATPase, 95.0 0.032 7E-07 47.5 4.2 40 189-232 6-45 (133)
359 KOG1259 Nischarin, modulator o 95.0 0.008 1.7E-07 57.2 0.6 100 401-507 280-386 (490)
360 PRK00131 aroK shikimate kinase 95.0 0.018 3.9E-07 51.7 2.9 25 208-232 3-27 (175)
361 PRK10751 molybdopterin-guanine 95.0 0.026 5.6E-07 50.5 3.7 26 207-232 4-29 (173)
362 TIGR02322 phosphon_PhnN phosph 95.0 0.019 4.1E-07 52.0 3.0 23 210-232 2-24 (179)
363 cd03217 ABC_FeS_Assembly ABC-t 94.9 0.1 2.2E-06 48.1 7.9 25 208-232 25-49 (200)
364 TIGR00708 cobA cob(I)alamin ad 94.9 0.17 3.8E-06 45.1 8.7 117 209-328 5-140 (173)
365 PRK00625 shikimate kinase; Pro 94.9 0.019 4E-07 51.7 2.7 21 211-231 2-22 (173)
366 PF07726 AAA_3: ATPase family 94.9 0.023 5E-07 47.7 3.0 27 212-240 2-28 (131)
367 cd03213 ABCG_EPDR ABCG transpo 94.9 0.15 3.3E-06 46.8 8.7 24 208-231 34-57 (194)
368 KOG0743 AAA+-type ATPase [Post 94.9 0.62 1.4E-05 47.4 13.5 155 209-398 235-417 (457)
369 PF03205 MobB: Molybdopterin g 94.9 0.035 7.6E-07 48.0 4.2 39 210-249 1-39 (140)
370 TIGR03522 GldA_ABC_ATP gliding 94.9 0.21 4.5E-06 49.4 10.2 24 208-231 27-50 (301)
371 TIGR01359 UMP_CMP_kin_fam UMP- 94.9 0.017 3.7E-07 52.5 2.4 21 211-231 1-21 (183)
372 PF03308 ArgK: ArgK protein; 94.8 0.045 9.7E-07 51.7 5.1 39 190-232 14-52 (266)
373 PF05659 RPW8: Arabidopsis bro 94.8 0.69 1.5E-05 40.1 12.1 84 2-85 3-86 (147)
374 TIGR03263 guanyl_kin guanylate 94.8 0.022 4.8E-07 51.5 3.1 22 210-231 2-23 (180)
375 TIGR02329 propionate_PrpR prop 94.8 0.05 1.1E-06 57.8 6.0 46 183-232 213-258 (526)
376 KOG3347 Predicted nucleotide k 94.8 0.046 1E-06 46.7 4.6 70 209-288 7-76 (176)
377 cd04159 Arl10_like Arl10-like 94.8 0.13 2.9E-06 44.7 8.0 21 212-232 2-22 (159)
378 PF10236 DAP3: Mitochondrial r 94.8 0.8 1.7E-05 45.4 14.1 49 339-388 258-306 (309)
379 PRK10463 hydrogenase nickel in 94.8 0.14 3E-06 49.7 8.4 87 207-299 102-195 (290)
380 PF00625 Guanylate_kin: Guanyl 94.8 0.031 6.8E-07 50.8 3.9 36 209-246 2-37 (183)
381 TIGR03881 KaiC_arch_4 KaiC dom 94.8 0.2 4.3E-06 47.3 9.5 42 207-250 18-59 (229)
382 TIGR02655 circ_KaiC circadian 94.8 0.2 4.3E-06 53.1 10.4 60 192-259 250-309 (484)
383 TIGR01420 pilT_fam pilus retra 94.7 0.044 9.6E-07 55.2 5.2 112 209-331 122-233 (343)
384 TIGR03575 selen_PSTK_euk L-ser 94.7 0.1 2.2E-06 52.0 7.6 21 212-232 2-22 (340)
385 COG1066 Sms Predicted ATP-depe 94.7 0.11 2.4E-06 52.0 7.7 83 208-299 92-179 (456)
386 PF13481 AAA_25: AAA domain; P 94.7 0.14 3.1E-06 46.8 8.1 42 210-251 33-82 (193)
387 COG0467 RAD55 RecA-superfamily 94.7 0.044 9.6E-07 52.9 4.8 43 207-251 21-63 (260)
388 PF06745 KaiC: KaiC; InterPro 94.6 0.042 9.2E-07 51.8 4.6 87 207-297 17-124 (226)
389 KOG0739 AAA+-type ATPase [Post 94.6 0.49 1.1E-05 45.4 11.3 96 183-299 134-236 (439)
390 TIGR02868 CydC thiol reductant 94.6 0.14 3.1E-06 55.0 9.1 25 207-231 359-383 (529)
391 COG1643 HrpA HrpA-like helicas 94.6 0.19 4E-06 56.0 10.0 137 188-335 52-215 (845)
392 TIGR03498 FliI_clade3 flagella 94.6 0.19 4.2E-06 51.6 9.5 87 208-297 139-239 (418)
393 PRK06002 fliI flagellum-specif 94.6 0.19 4.1E-06 51.8 9.4 87 208-297 164-263 (450)
394 cd02024 NRK1 Nicotinamide ribo 94.6 0.021 4.6E-07 51.9 2.3 22 211-232 1-22 (187)
395 PRK06217 hypothetical protein; 94.6 0.023 5.1E-07 51.6 2.6 22 211-232 3-24 (183)
396 PF08477 Miro: Miro-like prote 94.6 0.026 5.7E-07 47.0 2.7 21 212-232 2-22 (119)
397 cd00227 CPT Chloramphenicol (C 94.6 0.026 5.5E-07 51.0 2.8 23 210-232 3-25 (175)
398 TIGR01425 SRP54_euk signal rec 94.6 0.21 4.6E-06 51.3 9.7 25 207-231 98-122 (429)
399 PRK00300 gmk guanylate kinase; 94.6 0.027 5.9E-07 52.2 3.1 25 208-232 4-28 (205)
400 cd00544 CobU Adenosylcobinamid 94.6 0.13 2.8E-06 46.0 7.3 78 212-297 2-82 (169)
401 TIGR03878 thermo_KaiC_2 KaiC d 94.6 0.12 2.7E-06 49.8 7.7 41 207-249 34-74 (259)
402 PRK07594 type III secretion sy 94.6 0.2 4.4E-06 51.5 9.5 86 208-297 154-254 (433)
403 cd02021 GntK Gluconate kinase 94.6 0.024 5.1E-07 49.7 2.5 22 211-232 1-22 (150)
404 PRK14738 gmk guanylate kinase; 94.5 0.037 8E-07 51.4 3.8 25 207-231 11-35 (206)
405 TIGR00390 hslU ATP-dependent p 94.5 0.092 2E-06 53.4 6.7 51 182-232 12-70 (441)
406 smart00534 MUTSac ATPase domai 94.5 0.033 7.1E-07 50.8 3.3 118 211-334 1-128 (185)
407 PRK14737 gmk guanylate kinase; 94.5 0.037 8E-07 50.4 3.6 25 208-232 3-27 (186)
408 PF13086 AAA_11: AAA domain; P 94.5 0.12 2.5E-06 48.7 7.2 52 211-262 19-75 (236)
409 COG0714 MoxR-like ATPases [Gen 94.5 0.083 1.8E-06 53.0 6.4 63 183-258 25-87 (329)
410 cd02020 CMPK Cytidine monophos 94.5 0.026 5.6E-07 49.0 2.5 21 211-231 1-21 (147)
411 PTZ00185 ATPase alpha subunit; 94.5 0.22 4.8E-06 51.8 9.4 90 208-297 188-298 (574)
412 cd01878 HflX HflX subfamily. 94.4 0.074 1.6E-06 49.2 5.6 26 208-233 40-65 (204)
413 COG1703 ArgK Putative periplas 94.4 0.057 1.2E-06 51.8 4.7 62 192-257 38-99 (323)
414 cd00116 LRR_RI Leucine-rich re 94.4 0.0099 2.1E-07 59.1 -0.3 84 420-507 164-262 (319)
415 KOG4194 Membrane glycoprotein 94.4 0.014 3E-07 60.5 0.7 103 421-533 317-448 (873)
416 COG0194 Gmk Guanylate kinase [ 94.4 0.037 8E-07 49.4 3.2 24 209-232 4-27 (191)
417 PF13245 AAA_19: Part of AAA d 94.4 0.1 2.3E-06 39.7 5.3 23 209-231 10-33 (76)
418 PHA02774 E1; Provisional 94.4 0.12 2.6E-06 54.5 7.5 49 191-248 421-469 (613)
419 PF03266 NTPase_1: NTPase; In 94.4 0.028 6.1E-07 50.3 2.5 21 212-232 2-22 (168)
420 PRK08972 fliI flagellum-specif 94.4 0.2 4.3E-06 51.5 8.9 86 208-297 161-261 (444)
421 PRK10078 ribose 1,5-bisphospho 94.4 0.033 7.2E-07 50.8 3.1 23 210-232 3-25 (186)
422 PF13479 AAA_24: AAA domain 94.4 0.16 3.5E-06 47.4 7.8 21 209-229 3-23 (213)
423 cd00071 GMPK Guanosine monopho 94.4 0.029 6.3E-07 48.3 2.6 21 212-232 2-22 (137)
424 PRK10416 signal recognition pa 94.4 0.32 6.9E-06 48.3 10.2 26 207-232 112-137 (318)
425 PRK15424 propionate catabolism 94.4 0.08 1.7E-06 56.3 6.3 47 182-232 219-265 (538)
426 PF03969 AFG1_ATPase: AFG1-lik 94.4 0.062 1.4E-06 54.2 5.2 76 207-300 60-139 (362)
427 COG1936 Predicted nucleotide k 94.3 0.032 6.9E-07 49.1 2.6 20 211-230 2-21 (180)
428 KOG3665 ZYG-1-like serine/thre 94.3 0.024 5.3E-07 62.1 2.3 83 420-506 172-261 (699)
429 PRK09519 recA DNA recombinatio 94.3 0.18 3.9E-06 55.6 8.9 85 207-298 58-148 (790)
430 PRK05917 DNA polymerase III su 94.3 0.4 8.7E-06 46.6 10.4 59 287-345 94-154 (290)
431 KOG1859 Leucine-rich repeat pr 94.3 0.0087 1.9E-07 63.5 -1.1 82 418-506 184-265 (1096)
432 KOG0729 26S proteasome regulat 94.3 0.35 7.5E-06 45.5 9.3 96 183-299 178-281 (435)
433 PLN02348 phosphoribulokinase 94.3 0.23 4.9E-06 50.2 8.9 26 207-232 47-72 (395)
434 PRK09280 F0F1 ATP synthase sub 94.3 0.26 5.7E-06 51.0 9.6 90 207-297 142-247 (463)
435 PRK13947 shikimate kinase; Pro 94.3 0.032 6.8E-07 50.1 2.6 21 211-231 3-23 (171)
436 TIGR00416 sms DNA repair prote 94.3 0.33 7.2E-06 50.8 10.5 96 191-298 80-180 (454)
437 PRK15115 response regulator Gl 94.2 0.072 1.6E-06 55.9 5.7 46 183-232 135-180 (444)
438 PRK13949 shikimate kinase; Pro 94.2 0.033 7.2E-07 49.9 2.7 22 211-232 3-24 (169)
439 cd01135 V_A-ATPase_B V/A-type 94.2 0.24 5.2E-06 47.7 8.5 90 208-297 68-175 (276)
440 PRK00409 recombination and DNA 94.2 0.028 6E-07 62.8 2.5 176 208-397 326-512 (782)
441 cd02029 PRK_like Phosphoribulo 94.2 0.12 2.6E-06 49.4 6.4 77 211-289 1-85 (277)
442 PRK05973 replicative DNA helic 94.2 0.25 5.5E-06 46.6 8.6 50 207-260 62-111 (237)
443 PRK08927 fliI flagellum-specif 94.2 0.3 6.4E-06 50.4 9.7 86 208-297 157-257 (442)
444 COG4886 Leucine-rich repeat (L 94.2 0.014 2.9E-07 60.3 0.1 80 422-506 141-220 (394)
445 cd00820 PEPCK_HprK Phosphoenol 94.2 0.045 9.8E-07 44.6 3.1 22 209-230 15-36 (107)
446 COG1419 FlhF Flagellar GTP-bin 94.2 0.35 7.7E-06 48.7 9.9 89 208-299 202-292 (407)
447 COG1124 DppF ABC-type dipeptid 94.1 0.04 8.6E-07 51.3 3.0 24 208-231 32-55 (252)
448 PRK11823 DNA repair protein Ra 94.1 0.22 4.7E-06 52.1 8.8 84 207-298 78-166 (446)
449 cd00984 DnaB_C DnaB helicase C 94.1 0.32 7E-06 46.2 9.4 53 208-263 12-64 (242)
450 cd01132 F1_ATPase_alpha F1 ATP 94.1 0.15 3.3E-06 49.0 7.0 86 208-297 68-170 (274)
451 COG4133 CcmA ABC-type transpor 94.1 0.45 9.8E-06 42.7 9.3 53 276-328 136-190 (209)
452 PRK15453 phosphoribulokinase; 94.0 0.3 6.4E-06 47.1 8.8 78 208-287 4-89 (290)
453 PRK12597 F0F1 ATP synthase sub 94.0 0.19 4.1E-06 52.2 8.0 90 207-297 141-246 (461)
454 PF08433 KTI12: Chromatin asso 94.0 0.055 1.2E-06 52.3 3.9 23 210-232 2-24 (270)
455 cd00464 SK Shikimate kinase (S 94.0 0.038 8.3E-07 48.4 2.6 20 212-231 2-21 (154)
456 PRK14530 adenylate kinase; Pro 94.0 0.038 8.2E-07 51.7 2.7 21 211-231 5-25 (215)
457 PRK12678 transcription termina 94.0 0.13 2.7E-06 54.3 6.5 99 193-297 405-512 (672)
458 PRK12339 2-phosphoglycerate ki 94.0 0.048 1E-06 50.1 3.2 24 209-232 3-26 (197)
459 TIGR00764 lon_rel lon-related 94.0 0.11 2.3E-06 56.5 6.3 43 182-232 18-60 (608)
460 TIGR01313 therm_gnt_kin carboh 94.0 0.035 7.5E-07 49.4 2.3 20 212-231 1-20 (163)
461 PRK05986 cob(I)alamin adenolsy 94.0 0.24 5.2E-06 44.9 7.6 119 208-328 21-158 (191)
462 cd00046 DEXDc DEAD-like helica 93.9 0.27 5.7E-06 41.6 7.8 36 211-246 2-37 (144)
463 TIGR00073 hypB hydrogenase acc 93.9 0.048 1E-06 50.7 3.2 26 207-232 20-45 (207)
464 PF03215 Rad17: Rad17 cell cyc 93.9 0.066 1.4E-06 56.7 4.6 59 183-246 20-78 (519)
465 CHL00206 ycf2 Ycf2; Provisiona 93.9 0.97 2.1E-05 54.2 14.0 25 208-232 1629-1653(2281)
466 PRK06793 fliI flagellum-specif 93.9 0.22 4.8E-06 51.2 8.2 88 208-298 155-256 (432)
467 PRK10923 glnG nitrogen regulat 93.9 0.12 2.7E-06 54.6 6.7 46 183-232 139-184 (469)
468 COG2019 AdkA Archaeal adenylat 93.9 0.052 1.1E-06 47.4 3.0 23 209-231 4-26 (189)
469 TIGR00041 DTMP_kinase thymidyl 93.9 0.33 7.2E-06 44.4 8.8 23 210-232 4-26 (195)
470 PRK13765 ATP-dependent proteas 93.9 0.089 1.9E-06 57.1 5.5 74 182-265 31-104 (637)
471 PRK13975 thymidylate kinase; P 93.9 0.047 1E-06 50.2 3.0 23 210-232 3-25 (196)
472 COG0529 CysC Adenylylsulfate k 93.9 0.12 2.6E-06 45.7 5.3 25 207-231 21-45 (197)
473 cd01124 KaiC KaiC is a circadi 93.9 0.069 1.5E-06 48.5 4.1 38 211-250 1-38 (187)
474 smart00487 DEXDc DEAD-like hel 93.8 0.17 3.7E-06 45.8 6.8 52 210-264 25-78 (201)
475 cd01136 ATPase_flagellum-secre 93.8 0.38 8.3E-06 47.7 9.4 86 208-297 68-168 (326)
476 PRK05057 aroK shikimate kinase 93.8 0.048 1E-06 49.1 2.9 23 210-232 5-27 (172)
477 PF06309 Torsin: Torsin; Inte 93.8 0.11 2.4E-06 43.4 4.8 40 190-232 37-76 (127)
478 PRK14527 adenylate kinase; Pro 93.8 0.049 1.1E-06 49.9 3.0 24 208-231 5-28 (191)
479 PRK08149 ATP synthase SpaL; Va 93.8 0.24 5.2E-06 50.9 8.2 86 208-297 150-250 (428)
480 cd01672 TMPK Thymidine monopho 93.8 0.13 2.9E-06 47.0 5.9 22 211-232 2-23 (200)
481 PF01078 Mg_chelatase: Magnesi 93.7 0.081 1.8E-06 48.5 4.2 42 182-231 3-44 (206)
482 KOG0532 Leucine-rich repeat (L 93.7 0.021 4.7E-07 59.0 0.5 81 420-506 120-200 (722)
483 PF03029 ATP_bind_1: Conserved 93.7 0.061 1.3E-06 51.1 3.4 33 214-248 1-33 (238)
484 TIGR00455 apsK adenylylsulfate 93.7 0.16 3.5E-06 46.1 6.2 26 207-232 16-41 (184)
485 COG0465 HflB ATP-dependent Zn 93.7 0.58 1.3E-05 49.9 10.9 182 181-387 149-357 (596)
486 COG1100 GTPase SAR1 and relate 93.6 0.05 1.1E-06 50.8 2.8 23 210-232 6-28 (219)
487 PRK13545 tagH teichoic acids e 93.6 0.55 1.2E-05 49.6 10.6 25 208-232 49-73 (549)
488 PRK05201 hslU ATP-dependent pr 93.6 0.16 3.4E-06 51.8 6.4 51 182-232 15-73 (443)
489 PF00025 Arf: ADP-ribosylation 93.6 0.21 4.5E-06 45.0 6.7 26 207-232 12-37 (175)
490 PF00005 ABC_tran: ABC transpo 93.6 0.057 1.2E-06 46.3 2.9 24 209-232 11-34 (137)
491 PRK11176 lipid transporter ATP 93.6 0.24 5.3E-06 53.9 8.4 24 208-231 368-391 (582)
492 COG0003 ArsA Predicted ATPase 93.6 0.12 2.6E-06 51.1 5.4 48 209-258 2-49 (322)
493 PRK15064 ABC transporter ATP-b 93.6 0.56 1.2E-05 50.4 11.1 25 208-232 26-50 (530)
494 PRK05922 type III secretion sy 93.5 0.33 7.1E-06 50.0 8.7 86 208-297 156-256 (434)
495 TIGR00176 mobB molybdopterin-g 93.5 0.048 1E-06 48.0 2.4 22 211-232 1-22 (155)
496 KOG3665 ZYG-1-like serine/thre 93.5 0.038 8.3E-07 60.6 2.1 84 418-506 145-231 (699)
497 COG2274 SunT ABC-type bacterio 93.5 0.27 5.8E-06 54.2 8.5 24 208-231 498-521 (709)
498 PRK10875 recD exonuclease V su 93.5 0.23 5E-06 53.8 7.9 53 209-261 167-220 (615)
499 PRK07196 fliI flagellum-specif 93.5 0.28 6.2E-06 50.5 8.1 26 207-232 153-178 (434)
500 PLN02200 adenylate kinase fami 93.5 0.064 1.4E-06 50.8 3.3 24 208-231 42-65 (234)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-56 Score=483.37 Aligned_cols=470 Identities=25% Similarity=0.419 Sum_probs=362.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHhhccchhhhHH
Q 045152 3 DAIVSSLLGQLTSVAADEVKQHVRLVTGVGEEVKKLTSNLRAIRAVLEDAEKRQMQRDNAVTFWLDQLRDASYDMEDVLD 82 (533)
Q Consensus 3 ~~~v~~~l~kl~~~l~~~~~~e~~~~~~~~~~~~~L~~~L~~i~~~l~~ae~~~~~~~~~~~~Wl~~lrd~ayd~eD~lD 82 (533)
+++++..++|+.++ +.++...+.+.++.+..|+++|..++++++|++.++.. ...+..|.+.+++++|++||+++
T Consensus 2 ~~~~s~~~~~~~~~----l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~ 76 (889)
T KOG4658|consen 2 GACVSFGVEKLDQL----LNRESECLDGKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDIIW 76 (889)
T ss_pred CeEEEEehhhHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888887 88888999999999999999999999999999998876 77889999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCcchhccccccccccccccccccccCcccchhhHHHHHHHHHHHHHHHHHHHHhchhCCcccccc
Q 045152 83 EWTTARLKLQIEGIDDDNALALAPHKKKVRSFFCAVSNCFGSFKQLCLRHDIAVKIREINGKLDDIASQKDKFNFKFDEN 162 (533)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~ 162 (533)
.|.......+..+.-. . ...-.++. |+ ..++++.+..+..+.+++-.+...+..++......
T Consensus 77 ~~~v~~~~~~~~~~l~--~--~~~~~~~~---------c~-----~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~ 138 (889)
T KOG4658|consen 77 LFLVEEIERKANDLLS--T--RSVERQRL---------CL-----CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFE 138 (889)
T ss_pred HHHHHHHHHHHhHHhh--h--hHHHHHHH---------hh-----hhhHhHhhhhhHhHHHHHHHHHHHHHHhcccccee
Confidence 9998887654332110 0 00000111 11 13445555555555566655555555555332111
Q ss_pred cCCC-CCCCCcccccccccCCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchh-hhccCC
Q 045152 163 VSNN-VKKPERVRTISLIDEGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE-VKRNFE 240 (533)
Q Consensus 163 ~~~~-~~~~~~~~~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~ 240 (533)
.... ......+.+.|.....+ ||.+..++++.+.|...+ ..+++|+||||+||||||+.++|+.. ++.+|+
T Consensus 139 ~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd 211 (889)
T KOG4658|consen 139 VVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFD 211 (889)
T ss_pred cccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCc
Confidence 0000 11122334445555555 999999999999997653 38999999999999999999999987 999999
Q ss_pred ceEEEEeCCchhHHHHHHHHHHHhCCCCCCCc--cHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCC
Q 045152 241 KVIWVCVSDTFEEIRVAKAIIEGLGVSASGLS--EFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHE 318 (533)
Q Consensus 241 ~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~--~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~g 318 (533)
.++||+||+.++...++++|+..++....... ..+.++..+.+.|++|||+|||||||+. .+|+.+..++|...+|
T Consensus 212 ~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g 289 (889)
T KOG4658|consen 212 GVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENG 289 (889)
T ss_pred eEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCC
Confidence 99999999999999999999999887443322 2468899999999999999999999998 5699999999998899
Q ss_pred ceEEEEecchHHHhh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHHhhc
Q 045152 319 SKILITTRDRSVALQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLLRS 397 (533)
Q Consensus 319 s~IiiTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~ 397 (533)
|+|++|||++.|+.. +++...++++.|+.++||+||++.+|.. .....+.++++|++|+++|+|+|||++++|+.|+.
T Consensus 290 ~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~-~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~ 368 (889)
T KOG4658|consen 290 SKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPN-TLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLAC 368 (889)
T ss_pred eEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccc-cccccccHHHHHHHHHHHhCChHHHHHHHHHHhcC
Confidence 999999999999998 7888999999999999999999999843 33445559999999999999999999999999999
Q ss_pred ccchHHHHHHHhhhhhhcc-------ccccc---------------ccceEEEe--------------------------
Q 045152 398 KSTVKEWQRILDSEMWKEN-------ISIMP---------------CLSVLRVY-------------------------- 429 (533)
Q Consensus 398 ~~~~~~w~~~l~~~~~~~~-------~~ilp---------------~L~~L~l~-------------------------- 429 (533)
|.+..+|+++.+...+... +.++| |+.|+.++
T Consensus 369 K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~ 448 (889)
T KOG4658|consen 369 KKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDG 448 (889)
T ss_pred CCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCcccc
Confidence 9999999999886433310 11111 11111110
Q ss_pred --------------------------------------------------------------------------------
Q 045152 430 -------------------------------------------------------------------------------- 429 (533)
Q Consensus 430 -------------------------------------------------------------------------------- 429 (533)
T Consensus 449 ~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~ 528 (889)
T KOG4658|consen 449 GETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRM 528 (889)
T ss_pred ccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEE
Confidence
Q ss_pred --------------ecCC------------cccCCc-cccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCC
Q 045152 430 --------------LCPK------------LKVLPD-YLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCP 482 (533)
Q Consensus 430 --------------~c~~------------l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~ 482 (533)
.|++ +..++. .+..++.|++|++++|.++.+|| .+++.|-+|++|++++ +
T Consensus 529 s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP--~~I~~Li~LryL~L~~-t 605 (889)
T KOG4658|consen 529 SLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP--SSIGELVHLRYLDLSD-T 605 (889)
T ss_pred EEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC--hHHhhhhhhhcccccC-C
Confidence 0111 111221 13448899999999999999999 7999999999999998 7
Q ss_pred CCCCCCcCCCCCCCcceeeccCCchh
Q 045152 483 KLKLLPDSLLQITTLKELGMEGSPLL 508 (533)
Q Consensus 483 ~l~~lP~~~~~l~~L~~L~~~~c~~l 508 (533)
.++.||.++.+|+.|.+|++..+..+
T Consensus 606 ~I~~LP~~l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 606 GISHLPSGLGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred CccccchHHHHHHhhheecccccccc
Confidence 89999999999999999999876543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.4e-36 Score=345.54 Aligned_cols=216 Identities=20% Similarity=0.343 Sum_probs=170.2
Q ss_pred cCCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEe---CCc------
Q 045152 180 DEGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV---SDT------ 250 (533)
Q Consensus 180 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---s~~------ 250 (533)
+..++|||+..++++..+|.... +++++|+|+||||+||||||+.+|+ ++..+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccc
Confidence 45679999999999999885432 5789999999999999999999998 57789998888742 111
Q ss_pred -----hh-HHHHHHHHHHHhCCCCC-CCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEE
Q 045152 251 -----FE-EIRVAKAIIEGLGVSAS-GLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILI 323 (533)
Q Consensus 251 -----~~-~~~l~~~il~~l~~~~~-~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Iii 323 (533)
++ ...++.+++.++..... .... ...+++.+.++|+||||||||+. ..|+.+.......++||+|||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEE
Confidence 01 12344455554432211 1111 14567788999999999999876 568888776666678999999
Q ss_pred EecchHHHhhhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHHhhcccchHH
Q 045152 324 TTRDRSVALQLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLLRSKSTVKE 403 (533)
Q Consensus 324 TtR~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~ 403 (533)
|||+..++...+....|+++.|+.++||+||+++||.. ...++.+.+++.+|+++|+|+|||++++|++|+.+ +..+
T Consensus 330 TTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~--~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~ 406 (1153)
T PLN03210 330 ITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKK--NSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKED 406 (1153)
T ss_pred EeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCC--CCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHH
Confidence 99999999887778899999999999999999999943 23345688999999999999999999999999987 6889
Q ss_pred HHHHHhh
Q 045152 404 WQRILDS 410 (533)
Q Consensus 404 w~~~l~~ 410 (533)
|+.+++.
T Consensus 407 W~~~l~~ 413 (1153)
T PLN03210 407 WMDMLPR 413 (1153)
T ss_pred HHHHHHH
Confidence 9988754
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.5e-34 Score=283.49 Aligned_cols=222 Identities=39% Similarity=0.572 Sum_probs=179.9
Q ss_pred chhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCC
Q 045152 187 RVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGV 266 (533)
Q Consensus 187 R~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 266 (533)
||.++++|.++|.... ++.++|+|+||||+||||||..++++..++.+|+.++|+.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7889999999997643 578999999999999999999999987789999999999999998889999999999988
Q ss_pred CCC---CCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHHHhhhCC-CCeeeC
Q 045152 267 SAS---GLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSVALQLGS-IDIIPV 342 (533)
Q Consensus 267 ~~~---~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~~~~~-~~~~~l 342 (533)
... ...+.+.....+.+.+.++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 4466778999999999999999999999876 4788888888777789999999999998877655 678999
Q ss_pred CCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHHhhcccchHHHHHHHhhhhhhc
Q 045152 343 KELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLLRSKSTVKEWQRILDSEMWKE 415 (533)
Q Consensus 343 ~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~l~~~~~~~ 415 (533)
++|+.+++++||++.++... ....+.+++.+++|+++|+|+|||++++|++|+.+.+..+|.++++...+..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~ 226 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSL 226 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCH
T ss_pred cccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987433 2345667889999999999999999999999988778899999998766554
No 4
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.33 E-value=1.3e-10 Score=113.29 Aligned_cols=183 Identities=16% Similarity=0.159 Sum_probs=115.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHH----H
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQ----E 283 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~----~ 283 (533)
...++.|+|++|+|||||++.+++.... ..+ ..+|+ +....+..+++..|...++.+.... +.......+. .
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~-~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGR-DKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHH
Confidence 3458899999999999999999975321 111 12233 3334567788899998887654322 2222223333 2
Q ss_pred H-hCCceEEEEEeCCCCCCccccchhhhcccC---CCCCceEEEEecchHHHhhhC----------CCCeeeCCCCChHh
Q 045152 284 Y-ITRKKFFLVLDDVWDGDYKKWNPFFSCLKN---GHHESKILITTRDRSVALQLG----------SIDIIPVKELAEEE 349 (533)
Q Consensus 284 ~-l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~---~~~gs~IiiTtR~~~v~~~~~----------~~~~~~l~~L~~~~ 349 (533)
. ..+++.++|+||++......++.+...... ......|++|.... ....+. ....+++++++.++
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 267889999999988765556655432221 12233455665432 221111 13457899999999
Q ss_pred hHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHHh
Q 045152 350 CWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLL 395 (533)
Q Consensus 350 ~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 395 (533)
..+++...+...+......--.+..+.|++.++|.|..+..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987764222111122235778999999999999999888766
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.30 E-value=6.8e-11 Score=121.98 Aligned_cols=211 Identities=18% Similarity=0.139 Sum_probs=128.0
Q ss_pred cCCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHH
Q 045152 180 DEGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 259 (533)
Q Consensus 180 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 259 (533)
.++.++||++++++|...+...-. ......+.|+|++|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 456799999999999999854321 234456789999999999999999985332222234566776666677889999
Q ss_pred HHHHhCCCC--CCCccHHHHHHHHHHHhC--CceEEEEEeCCCCCC-ccccchhhhccc--CCCCCce--EEEEecchHH
Q 045152 260 IIEGLGVSA--SGLSEFESLMKQIQEYIT--RKKFFLVLDDVWDGD-YKKWNPFFSCLK--NGHHESK--ILITTRDRSV 330 (533)
Q Consensus 260 il~~l~~~~--~~~~~~~~l~~~l~~~l~--~kr~LlVLDdv~~~~-~~~~~~l~~~l~--~~~~gs~--IiiTtR~~~v 330 (533)
++.++.... ....+..++...+.+.+. +++.+||||+++... ....+.+...+. ....+++ +|.++....+
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch
Confidence 999987521 122345666677777764 456899999997642 111222222221 1122333 5666655433
Q ss_pred HhhhC-------CCCeeeCCCCChHhhHHHHHHhhccC--CCccccccchHHHHHHHhHhCCCcchhHHHH
Q 045152 331 ALQLG-------SIDIIPVKELAEEECWSLLERLAFFR--RSVDDHEKLEPIGRKIAHKCKGLPLAAKVIW 392 (533)
Q Consensus 331 ~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 392 (533)
..... ....+.+++++.++..+++...+..+ ........++.+++......|..+.|+..+-
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 32211 12467899999999999999876321 1111222222233322222455677766654
No 6
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.23 E-value=2.4e-11 Score=115.64 Aligned_cols=196 Identities=21% Similarity=0.180 Sum_probs=99.1
Q ss_pred eeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHH-----
Q 045152 184 VCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK----- 258 (533)
Q Consensus 184 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~----- 258 (533)
|+||+.|+++|.+++.. +....+.|+|+.|+|||+|++.+.+. .+..-...+|+..........+..
T Consensus 1 F~gR~~el~~l~~~l~~------~~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLES------GPSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh------hcCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 68999999999998853 23568999999999999999999874 222111344444333322211111
Q ss_pred --------HHHHHhCCCCC------CCccHHHHHHHHHHHh--CCceEEEEEeCCCCCC-c-cc----cchhhhcccC--
Q 045152 259 --------AIIEGLGVSAS------GLSEFESLMKQIQEYI--TRKKFFLVLDDVWDGD-Y-KK----WNPFFSCLKN-- 314 (533)
Q Consensus 259 --------~il~~l~~~~~------~~~~~~~l~~~l~~~l--~~kr~LlVLDdv~~~~-~-~~----~~~l~~~l~~-- 314 (533)
.+...+..... ...........+.+.+ .+++++||+||+.... . .. ...+...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 12222211110 1111122222232333 2345999999996543 0 01 1123333322
Q ss_pred CCCCceEEEEecchHHHhh--------hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc
Q 045152 315 GHHESKILITTRDRSVALQ--------LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL 386 (533)
Q Consensus 315 ~~~gs~IiiTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 386 (533)
......+|++.....+... .+....+.+++|+.+++++++....-.. ... +.-.+...+|+..+||+|.
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HH
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHH
Confidence 1233345555554444433 2334559999999999999999865311 111 1224556999999999998
Q ss_pred hhHH
Q 045152 387 AAKV 390 (533)
Q Consensus 387 ai~~ 390 (533)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8754
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.19 E-value=7.2e-10 Score=113.13 Aligned_cols=206 Identities=15% Similarity=0.079 Sum_probs=124.6
Q ss_pred cCCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhh-ccC---CceEEEEeCCchhHHH
Q 045152 180 DEGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK-RNF---EKVIWVCVSDTFEEIR 255 (533)
Q Consensus 180 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~ 255 (533)
.++.++||++++++|..+|..... ......+.|+|++|+|||++++.++++..-. ... -..+|+++....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345799999999999999864321 2345678999999999999999999752211 111 1356777776667778
Q ss_pred HHHHHHHHhC---CCCC-CCccHHHHHHHHHHHhC--CceEEEEEeCCCCCCccccch-hhhcccC----CC--CCceEE
Q 045152 256 VAKAIIEGLG---VSAS-GLSEFESLMKQIQEYIT--RKKFFLVLDDVWDGDYKKWNP-FFSCLKN----GH--HESKIL 322 (533)
Q Consensus 256 l~~~il~~l~---~~~~-~~~~~~~l~~~l~~~l~--~kr~LlVLDdv~~~~~~~~~~-l~~~l~~----~~--~gs~Ii 322 (533)
++..|+.++. ...+ ...+..+....+.+.+. +++++||||+++... ..... +...+.. .. ....+|
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~-~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV-GDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc-cCCcHHHHhHhccccccCCCCCeEEEE
Confidence 8999998883 2211 12234455555666553 568899999997652 11112 1111111 11 223445
Q ss_pred EEecchHHHhhhC-----C--CCeeeCCCCChHhhHHHHHHhhccC-CCccccccchHHHHHHHhHhCCCcchh
Q 045152 323 ITTRDRSVALQLG-----S--IDIIPVKELAEEECWSLLERLAFFR-RSVDDHEKLEPIGRKIAHKCKGLPLAA 388 (533)
Q Consensus 323 iTtR~~~v~~~~~-----~--~~~~~l~~L~~~~~~~Lf~~~a~~~-~~~~~~~~l~~~~~~I~~~c~GlPLai 388 (533)
.+++.......+. . ...+.+++.+.++..+++..++-.. ......++..+....++....|.|..+
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 5554443222111 1 2468899999999999999876311 111122233344555677777888554
No 8
>PF05729 NACHT: NACHT domain
Probab=99.10 E-value=7.5e-10 Score=99.34 Aligned_cols=143 Identities=21% Similarity=0.280 Sum_probs=88.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhcc----CCceEEEEeCCchhHH---HHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFEEI---RVAKAIIEGLGVSASGLSEFESLMKQIQ 282 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~l~~~il~~l~~~~~~~~~~~~l~~~l~ 282 (533)
+++.|+|.+|+||||+++.++........ +...+|++........ .+...|.......... ... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP---IEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh---hHH---HHH
Confidence 47899999999999999998875322222 4456677655433322 3444444443322111 111 122
Q ss_pred HH-hCCceEEEEEeCCCCCCcc-------ccchhh-hcccC-CCCCceEEEEecchHH---HhhhCCCCeeeCCCCChHh
Q 045152 283 EY-ITRKKFFLVLDDVWDGDYK-------KWNPFF-SCLKN-GHHESKILITTRDRSV---ALQLGSIDIIPVKELAEEE 349 (533)
Q Consensus 283 ~~-l~~kr~LlVLDdv~~~~~~-------~~~~l~-~~l~~-~~~gs~IiiTtR~~~v---~~~~~~~~~~~l~~L~~~~ 349 (533)
.. ...+++++|||++++.... .+..+. ..++. ..++++++||+|.... .........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 2568999999999764321 122222 33332 3568999999998665 3333445689999999999
Q ss_pred hHHHHHHhh
Q 045152 350 CWSLLERLA 358 (533)
Q Consensus 350 ~~~Lf~~~a 358 (533)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997753
No 9
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.08 E-value=2.5e-09 Score=122.49 Aligned_cols=195 Identities=16% Similarity=0.202 Sum_probs=122.5
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC-CchhHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS-DTFEEIRVAKAI 260 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~l~~~i 260 (533)
+.+|-|. +|.+.|... ...+++.|+|++|.||||++...... ++.++|+++. .+.+...++..+
T Consensus 14 ~~~~~R~----rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRE----RLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcch----HHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 3456565 444444321 35789999999999999999988742 2368999986 444556676777
Q ss_pred HHHhCCCCCC-------------CccHHHHHHHHHHHhC--CceEEEEEeCCCCCCccccchhhhc-ccCCCCCceEEEE
Q 045152 261 IEGLGVSASG-------------LSEFESLMKQIQEYIT--RKKFFLVLDDVWDGDYKKWNPFFSC-LKNGHHESKILIT 324 (533)
Q Consensus 261 l~~l~~~~~~-------------~~~~~~l~~~l~~~l~--~kr~LlVLDdv~~~~~~~~~~l~~~-l~~~~~gs~IiiT 324 (533)
+..+...... ..+...+...+...+. +.+++|||||++..+......+... +.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7666321110 0122333333333332 6789999999977654444433333 3444556788899
Q ss_pred ecchH-H--HhhhCCCCeeeCC----CCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHHhhc
Q 045152 325 TRDRS-V--ALQLGSIDIIPVK----ELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLLRS 397 (533)
Q Consensus 325 tR~~~-v--~~~~~~~~~~~l~----~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~ 397 (533)
||... . ...........+. +|+.+|+.++|...... . . -.+...+|++.|+|.|+++..++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~---~-~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS---P-I---EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC---C-C---CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99732 1 1111112234455 99999999999875421 1 1 2345688999999999999988876654
Q ss_pred c
Q 045152 398 K 398 (533)
Q Consensus 398 ~ 398 (533)
.
T Consensus 232 ~ 232 (903)
T PRK04841 232 N 232 (903)
T ss_pred C
Confidence 3
No 10
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.89 E-value=1.1e-08 Score=102.52 Aligned_cols=193 Identities=20% Similarity=0.121 Sum_probs=101.9
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+|+|+++.++.+..++..... .......+.|+|++|+||||||+.+.+... ..+ .++..+ .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEecc-cccChHHHHHHH
Confidence 4699999999999888754221 123456788999999999999999987422 211 122211 111111222223
Q ss_pred HHhCCCCC-CCccH----HHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHHHhhhC-
Q 045152 262 EGLGVSAS-GLSEF----ESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSVALQLG- 335 (533)
Q Consensus 262 ~~l~~~~~-~~~~~----~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~~~~- 335 (533)
..+..... -.++. ....+.+...+.+.+..+|+|+..... . +...+ .+.+-|..|++...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~--~---~~~~l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR--S---IRLDL---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc--c---eeecC---CCceEEeecCCcccCCHHHHH
Confidence 22211100 00000 011222333333344444444432211 0 00011 12344556666443332221
Q ss_pred -CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHH
Q 045152 336 -SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWN 393 (533)
Q Consensus 336 -~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 393 (533)
....+.+++++.++..+++.+.+... . ..--.+....|++.|+|.|..+..+..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~-~---~~~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARIL-G---VEIDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHc-C---CCcCHHHHHHHHHHcCCCchHHHHHHH
Confidence 13468999999999999999877422 1 112245678999999999975554443
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.83 E-value=4.5e-08 Score=97.25 Aligned_cols=192 Identities=20% Similarity=0.126 Sum_probs=105.3
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+|||+++.++.+..++..... .......+.++|++|+|||+||+.+.+.. ...+ ..+..+...... .+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCch-hHHHHH
Confidence 3689999999999988853321 12345668899999999999999998742 2121 122211111111 122222
Q ss_pred HHhCCCCC------CCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHHHhhhC
Q 045152 262 EGLGVSAS------GLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSVALQLG 335 (533)
Q Consensus 262 ~~l~~~~~------~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~~~~ 335 (533)
..+..... +... ....+.+...+.+.+..+|+++.... ..+. ..+ .+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~~---~~~---~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSA--RSVR---LDL---PPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccc--ccee---ecC---CCeEEEEecCCccccCHHHH
Confidence 22221110 0000 11223344444445555555554322 1111 111 12445556777644433221
Q ss_pred --CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHH
Q 045152 336 --SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWN 393 (533)
Q Consensus 336 --~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 393 (533)
....+.+++++.++..+++.+.+... .. .--.+....|++.|+|.|..+..+..
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~-~~---~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLL-NV---EIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHh-CC---CcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 13467899999999999999877421 11 12245668899999999977655443
No 12
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.81 E-value=7.9e-08 Score=102.93 Aligned_cols=213 Identities=13% Similarity=0.100 Sum_probs=123.1
Q ss_pred CCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhh---hccCC--ceEEEEeCCchhHHH
Q 045152 181 EGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV---KRNFE--KVIWVCVSDTFEEIR 255 (533)
Q Consensus 181 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~ 255 (533)
++.+.||++|+++|...|...-. +.....++.|+|++|.|||++++.|.+...- ..... .+++|++....+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45789999999999998865432 1233467889999999999999999864211 11122 356777766667788
Q ss_pred HHHHHHHHhCCCCC-CCccHHHHHHHHHHHhC---CceEEEEEeCCCCCCccccchhhhcccC-CCCCceEEE--Eecch
Q 045152 256 VAKAIIEGLGVSAS-GLSEFESLMKQIQEYIT---RKKFFLVLDDVWDGDYKKWNPFFSCLKN-GHHESKILI--TTRDR 328 (533)
Q Consensus 256 l~~~il~~l~~~~~-~~~~~~~l~~~l~~~l~---~kr~LlVLDdv~~~~~~~~~~l~~~l~~-~~~gs~Iii--TtR~~ 328 (533)
++..|.+++....+ ...........+...+. ....+||||+++......-+.|...+.. ...+++|++ ++...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 88888888854322 22223334445554442 2346899999965432111223322221 123555544 33321
Q ss_pred H--------HHhhhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHHh
Q 045152 329 S--------VALQLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLL 395 (533)
Q Consensus 329 ~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 395 (533)
+ +...++ ...+..++.+.++..+++..++-..........++-+++.++...|-.-.|+.++-...
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 1 111122 23467799999999999999875321222223333444444444455556666554433
No 13
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.80 E-value=5.1e-08 Score=100.73 Aligned_cols=175 Identities=21% Similarity=0.226 Sum_probs=103.3
Q ss_pred ceeechhhHHH---HHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHH
Q 045152 183 EVCGRVEEKNE---LLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 259 (533)
Q Consensus 183 ~~vGR~~e~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 259 (533)
++||.+..+.. +..++.. .....+.++|++|+||||||+.+.+. .... |+.++......+-.+.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLRE 79 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHH
Confidence 57888776555 6666632 34567888999999999999999873 2222 2322221111111122
Q ss_pred HHHHhCCCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEE--EecchHHH---hh
Q 045152 260 IIEGLGVSASGLSEFESLMKQIQEY-ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILI--TTRDRSVA---LQ 333 (533)
Q Consensus 260 il~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Iii--TtR~~~v~---~~ 333 (533)
+++ ..... ..+++.+|+||+++..+....+.+...+.. |..++| ||.+.... ..
T Consensus 80 ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 80 VIE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHH
Confidence 221 11111 245788999999987665555556555443 444444 34443211 11
Q ss_pred hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 334 LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 334 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
......+.+.+++.++...++.+.+.... .....--.+....|++.|+|.+..+..+
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~-~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKE-RGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhh-cCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 22346789999999999999988653111 1101223456678899999998766443
No 14
>PRK06893 DNA replication initiation factor; Validated
Probab=98.80 E-value=4.2e-08 Score=92.89 Aligned_cols=152 Identities=18% Similarity=0.205 Sum_probs=93.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
...+.|+|++|+|||+|++.+++. .......+.|+.+... ......+ .+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~~~---------------------~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSPAV---------------------LENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhHHH---------------------Hhhcc-c
Confidence 356899999999999999999985 3223345567765311 0001111 11121 2
Q ss_pred eEEEEEeCCCCCC-ccccch-hhhcccCC-CCCceEE-EEecc---------hHHHhhhCCCCeeeCCCCChHhhHHHHH
Q 045152 289 KFFLVLDDVWDGD-YKKWNP-FFSCLKNG-HHESKIL-ITTRD---------RSVALQLGSIDIIPVKELAEEECWSLLE 355 (533)
Q Consensus 289 r~LlVLDdv~~~~-~~~~~~-l~~~l~~~-~~gs~Ii-iTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 355 (533)
.-+|+|||+|... ...|+. +...+... ..|..+| +|++. +.+...+.....+++++++.++.+++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998742 234553 33333322 2355554 45543 3555555556789999999999999999
Q ss_pred HhhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 356 RLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 356 ~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
+.++... . .--+++..-|++.+.|..-.+..+
T Consensus 172 ~~a~~~~-l---~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 172 RNAYQRG-I---ELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHcC-C---CCCHHHHHHHHHhccCCHHHHHHH
Confidence 9886321 1 122556788889998877665543
No 15
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.77 E-value=1.2e-08 Score=87.66 Aligned_cols=118 Identities=20% Similarity=0.264 Sum_probs=80.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhh---ccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVK---RNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEY 284 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~ 284 (533)
+.+++.|+|.+|+|||++++.+.++.... ..-..++|++++...+...+...|+..++.......+...+...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45789999999999999999998742110 013456799988877899999999999998766655667777788877
Q ss_pred hCCc-eEEEEEeCCCCC-CccccchhhhcccCCCCCceEEEEecc
Q 045152 285 ITRK-KFFLVLDDVWDG-DYKKWNPFFSCLKNGHHESKILITTRD 327 (533)
Q Consensus 285 l~~k-r~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IiiTtR~ 327 (533)
+... ..+||+||++.- +...++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7654 469999999665 4333444433332 556777777664
No 16
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.73 E-value=1.1e-07 Score=92.94 Aligned_cols=171 Identities=22% Similarity=0.264 Sum_probs=101.9
Q ss_pred CCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHH
Q 045152 181 EGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 260 (533)
Q Consensus 181 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 260 (533)
..+++|-...+.++++ .+.+....+||++|+||||||+.+... ....| ..++...+-.+=++.+
T Consensus 29 Q~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLREI 92 (436)
T ss_pred hHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHHHH
Confidence 3345555555554443 346777889999999999999999863 33343 3333322222222222
Q ss_pred HHHhCCCCCCCccHHHHHHHH-HHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEE--EecchHHHh---hh
Q 045152 261 IEGLGVSASGLSEFESLMKQI-QEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILI--TTRDRSVAL---QL 334 (533)
Q Consensus 261 l~~l~~~~~~~~~~~~l~~~l-~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Iii--TtR~~~v~~---~~ 334 (533)
+ +.- .....+++.+|++|.|+.-+..+-+.| ||.-..|.-|+| ||.++...- ..
T Consensus 93 ~-----------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 93 I-----------------EEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred H-----------------HHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHh
Confidence 2 222 223358999999999988765555555 444455776666 677654321 22
Q ss_pred CCCCeeeCCCCChHhhHHHHHHhhccCCCc--cccccc-hHHHHHHHhHhCCCcch
Q 045152 335 GSIDIIPVKELAEEECWSLLERLAFFRRSV--DDHEKL-EPIGRKIAHKCKGLPLA 387 (533)
Q Consensus 335 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~--~~~~~l-~~~~~~I~~~c~GlPLa 387 (533)
....++.+++|+.++...++.+.+...... .....+ ++...-++..++|--.+
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 336789999999999999998843211111 111112 33556677777775543
No 17
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.70 E-value=1.5e-07 Score=89.08 Aligned_cols=168 Identities=18% Similarity=0.185 Sum_probs=98.7
Q ss_pred hhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCC
Q 045152 188 VEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVS 267 (533)
Q Consensus 188 ~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~ 267 (533)
+..++.+..++.. .....+.|+|++|+|||+||+.+++. ........++++++.-.+. ...+
T Consensus 23 ~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~~------- 84 (226)
T TIGR03420 23 AELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA---DPEV------- 84 (226)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh---HHHH-------
Confidence 3456677766532 34568999999999999999999874 2223334556654322110 0011
Q ss_pred CCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCcc-cc-chhhhcccC-CCCCceEEEEecchH---------HHhhhC
Q 045152 268 ASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYK-KW-NPFFSCLKN-GHHESKILITTRDRS---------VALQLG 335 (533)
Q Consensus 268 ~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~-~~-~~l~~~l~~-~~~gs~IiiTtR~~~---------v~~~~~ 335 (533)
...+.. .-+|||||++..... .| +.+...+.. ...+.++|+|++... +...+.
T Consensus 85 --------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 85 --------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA 149 (226)
T ss_pred --------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh
Confidence 111222 238999999765322 22 334443332 123457888887532 222222
Q ss_pred CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHH
Q 045152 336 SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIW 392 (533)
Q Consensus 336 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 392 (533)
....+++++++.++...++...+-.. .. .--.+..+.+++.+.|+|..+..+-
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~~~~~~~-~~---~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQSRAARR-GL---QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred cCeeEecCCCCHHHHHHHHHHHHHHc-CC---CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 24578999999999999998754211 11 1224556778888999998876653
No 18
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.69 E-value=3.1e-08 Score=90.61 Aligned_cols=48 Identities=29% Similarity=0.315 Sum_probs=32.7
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcch
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND 233 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 233 (533)
.||||+++++++...|. .. .....+.+.|+|++|+|||+|.+.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AA--QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GT--SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HH--HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999995 22 23567999999999999999999988753
No 19
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.6e-06 Score=87.18 Aligned_cols=206 Identities=17% Similarity=0.153 Sum_probs=130.5
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccC--CceEEEEeCCchhHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEEIRVAKA 259 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~l~~~ 259 (533)
..+.+|+++++++...|...-. ...+.-+.|+|.+|.|||+.++.+.+. ++... ...++|++-...+...++..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 3489999999999988865432 233344899999999999999999984 33332 12789999999999999999
Q ss_pred HHHHhCCCCCCCccHHHHHHHHHHHhC--CceEEEEEeCCCCCCccccchhhhcccCCCC-CceEE--EEecchHHHhhh
Q 045152 260 IIEGLGVSASGLSEFESLMKQIQEYIT--RKKFFLVLDDVWDGDYKKWNPFFSCLKNGHH-ESKIL--ITTRDRSVALQL 334 (533)
Q Consensus 260 il~~l~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~-gs~Ii--iTtR~~~v~~~~ 334 (533)
|++.++..+.......+....+.+.+. ++.+++|||+++.-....-+.+...+..... .++|+ ..+.+......+
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 999997555445556667777777774 5789999999965422211333333332222 34443 344443332222
Q ss_pred CC-------CCeeeCCCCChHhhHHHHHHhhccCC-CccccccchHHHHHHHhHhCC-CcchhHHH
Q 045152 335 GS-------IDIIPVKELAEEECWSLLERLAFFRR-SVDDHEKLEPIGRKIAHKCKG-LPLAAKVI 391 (533)
Q Consensus 335 ~~-------~~~~~l~~L~~~~~~~Lf~~~a~~~~-~~~~~~~l~~~~~~I~~~c~G-lPLai~~~ 391 (533)
.+ ...+..+|-+.++-.+.+..++-.+- .....++.-++...++..-+| .-.|+..+
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 11 23477899999999999998774331 122233333444444444443 34444443
No 20
>PF13173 AAA_14: AAA domain
Probab=98.65 E-value=1.3e-07 Score=80.90 Aligned_cols=119 Identities=22% Similarity=0.309 Sum_probs=78.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCce
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKK 289 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 289 (533)
+++.|.|+.|+|||||+++++.+.. .....++++..+......... + ....+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccCC
Confidence 5899999999999999999986422 335677777665433111000 0 2223333334477
Q ss_pred EEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHHHhh------hCCCCeeeCCCCChHhh
Q 045152 290 FFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSVALQ------LGSIDIIPVKELAEEEC 350 (533)
Q Consensus 290 ~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 350 (533)
.+++||++... ..|......+.+..+..+|++|+.+...... .+....++|.||+..|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 88999999665 4677766666655567889999987665532 12245688999988764
No 21
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.63 E-value=2.6e-07 Score=84.64 Aligned_cols=176 Identities=22% Similarity=0.275 Sum_probs=93.5
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+|||-+.-++.+.-++..... ....+..+.++|++|+||||||..+.+. ....|. +++.+. ..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~-i~--------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPA-IE--------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchh-hh---------
Confidence 4799998888877655533211 2356788999999999999999999874 333331 222111 10
Q ss_pred HHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCC--------CCCc-----------eEE
Q 045152 262 EGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNG--------HHES-----------KIL 322 (533)
Q Consensus 262 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~--------~~gs-----------~Ii 322 (533)
...++...+.. + +++-+|.+|+++..+...-+.|..++.++ +++. -|=
T Consensus 88 -----------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 88 -----------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp -----------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred -----------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 01112222211 2 23457788999876544434444433322 1112 233
Q ss_pred EEecchHHHhhhCC-C-CeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHH
Q 045152 323 ITTRDRSVALQLGS-I-DIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKV 390 (533)
Q Consensus 323 iTtR~~~v~~~~~~-~-~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 390 (533)
.|||...+...+.. . -..+++..+.+|-..+..+.+..- .-+--++.+.+|+++|.|-|.-+.-
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l----~i~i~~~~~~~Ia~rsrGtPRiAnr 220 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL----NIEIDEDAAEEIARRSRGTPRIANR 220 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT----T-EE-HHHHHHHHHCTTTSHHHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh----CCCcCHHHHHHHHHhcCCChHHHHH
Confidence 57887555443333 2 345899999999999998876421 1222356789999999999976553
No 22
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=8.5e-07 Score=88.30 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=115.0
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcch----hhhccCCceEEEEe-CCchhHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND----EVKRNFEKVIWVCV-SDTFEEIRV 256 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~----~~~~~F~~~~wv~v-s~~~~~~~l 256 (533)
.+++|-+.-++.+..++..+ .-.....++|+.|+||||+|+.++..- ....|+|...|... +....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 35789888889999988433 235677899999999999998887621 12345565555432 22222222
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHHH-h-hh
Q 045152 257 AKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSVA-L-QL 334 (533)
Q Consensus 257 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~-~-~~ 334 (533)
.+++.+.+... -..+++-++|+|+++..+...++.+...+.....++.+|++|.+.+.. . ..
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 12222222111 113456678888887777678888999998877889898888765422 1 12
Q ss_pred CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhH
Q 045152 335 GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAK 389 (533)
Q Consensus 335 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 389 (533)
.....+++.+++.++....+.+... + . -.+.+..++..++|.|..+.
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~-~---~----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYN-D---I----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhc-C---C----CHHHHHHHHHHcCCCHHHHH
Confidence 2256899999999999887765431 1 0 12335678889999887554
No 23
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.61 E-value=2.4e-07 Score=80.79 Aligned_cols=125 Identities=21% Similarity=0.132 Sum_probs=71.1
Q ss_pred eechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHh
Q 045152 185 CGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGL 264 (533)
Q Consensus 185 vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l 264 (533)
+|++..+..+...+... ....+.|+|++|+|||++++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47788888888888432 346889999999999999999997422 222345666554433222111111000
Q ss_pred CCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCC------CCCceEEEEecchH
Q 045152 265 GVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNG------HHESKILITTRDRS 329 (533)
Q Consensus 265 ~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~------~~gs~IiiTtR~~~ 329 (533)
............++.++|+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999754222222333333221 35778888887653
No 24
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=9.7e-07 Score=89.60 Aligned_cols=181 Identities=18% Similarity=0.193 Sum_probs=108.5
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhcc-------------------CCce
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN-------------------FEKV 242 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~ 242 (533)
.+++|-+.-++.+...+... .-...+.++|+.|+||||+|+.+.+...-... +...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 36899999999988888532 23457789999999999999988763211000 1111
Q ss_pred EEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceE
Q 045152 243 IWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEY-ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKI 321 (533)
Q Consensus 243 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~I 321 (533)
.++..+....+ .+..++...+... ..+++-++|+|+++..+...++.+...+.......++
T Consensus 91 ~~~~~~~~~~v------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 91 IEIDAASRTKV------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred EEecccccCCH------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11111110111 1111111111110 1245568999999877655677777777665566777
Q ss_pred EEEecch-HHHhh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhH
Q 045152 322 LITTRDR-SVALQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAK 389 (533)
Q Consensus 322 iiTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 389 (533)
|++|.+. .+... ......+++++++.++..+.+...+...+ ..--++....|++.++|.|..+.
T Consensus 153 Il~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g----~~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 153 ILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES----IDTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred EEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 7766543 33322 22356799999999999988887653211 11123456778999999886443
No 25
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.59 E-value=5.6e-07 Score=90.77 Aligned_cols=196 Identities=18% Similarity=0.139 Sum_probs=107.4
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeCCchhHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEEIRVAKAI 260 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~i 260 (533)
.+++|++..++.+..++.. +..+.+.++|++|+||||+|+.+.+... ...+. ..+.+++++..+. ....+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~--~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQ--GKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhc--chhhh
Confidence 4688999999999888843 2344678999999999999999876321 11222 2344443321100 00000
Q ss_pred H------HHhCCC-CCCCccHHHHHHHHHHH---h--CCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecch
Q 045152 261 I------EGLGVS-ASGLSEFESLMKQIQEY---I--TRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDR 328 (533)
Q Consensus 261 l------~~l~~~-~~~~~~~~~l~~~l~~~---l--~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~ 328 (533)
. ..++.. .......+.....+... . .+.+-++|+||+..........+...+......+++|+|+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0 000000 00000111122222111 1 2345589999996554333444555554444557788777543
Q ss_pred H-HHhhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHH
Q 045152 329 S-VALQL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKV 390 (533)
Q Consensus 329 ~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 390 (533)
. +...+ .....+.+.+++.++...++...+...+ .. --.+....+++.++|.+-.+..
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~-~~---~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEG-VD---YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2 22222 2245788899999999888887653211 11 1245667888889887766543
No 26
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=1.2e-07 Score=99.44 Aligned_cols=196 Identities=19% Similarity=0.159 Sum_probs=111.5
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 262 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 262 (533)
+++|-+.-.+.|..++... .-...+.++|++|+||||+|+.+.+...-...+...+|.|.+... +.......+.
T Consensus 15 dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~ 88 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVL 88 (504)
T ss_pred HhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceE
Confidence 5899888888888887533 234567999999999999999887642211222223343321100 0000000000
Q ss_pred HhCCC-CCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecc-hHHHhhh-CCCC
Q 045152 263 GLGVS-ASGLSEFESLMKQIQE-YITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRD-RSVALQL-GSID 338 (533)
Q Consensus 263 ~l~~~-~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~-~~v~~~~-~~~~ 338 (533)
.+... .....+..++...+.. -..+++-++|||+++..+...+..+...+......+.+|++|.. ..+...+ ....
T Consensus 89 el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 89 EIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQ 168 (504)
T ss_pred EecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceE
Confidence 00100 0011112222222221 12345668999999877666677787777665555556655543 3333222 2356
Q ss_pred eeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchh
Q 045152 339 IIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAA 388 (533)
Q Consensus 339 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 388 (533)
.+++.+++.++....+.+.+...+-. --.+....|++.++|.+.-+
T Consensus 169 ~~~f~~ls~~el~~~L~~i~~~egi~----i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLLEAEGRE----AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 79999999999999998876421111 12445678889999988644
No 27
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=8e-07 Score=94.87 Aligned_cols=179 Identities=17% Similarity=0.183 Sum_probs=111.3
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhc-------------------cCCce
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------NFEKV 242 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~ 242 (533)
.++||.+..++.|..++... .-...+.++|..|+||||+|+.+.+...... .|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 36899999999999988532 2345667999999999999987765311111 11112
Q ss_pred EEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccccchhhhcccCCCCC
Q 045152 243 IWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEY----ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHE 318 (533)
Q Consensus 243 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~g 318 (533)
++++.+.. ...+++...+... ..++.-++|||+++..+...+..|+..+......
T Consensus 91 iEIDAas~---------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASN---------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEeccccc---------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 22222111 1122222222211 1345568899999887767788888877666667
Q ss_pred ceEEEEecchH-HHh-hhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc-hhHH
Q 045152 319 SKILITTRDRS-VAL-QLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL-AAKV 390 (533)
Q Consensus 319 s~IiiTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~ 390 (533)
.++|+||++.. +.. .......++++.++.++..+.+.+.+...+ ...-.+....|++.++|... |+..
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg----I~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER----IAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 78888777643 322 223357899999999999999887653111 11124556788889988664 4443
No 28
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=8e-07 Score=96.66 Aligned_cols=183 Identities=18% Similarity=0.204 Sum_probs=112.8
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhcc-------------------CCce
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN-------------------FEKV 242 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~ 242 (533)
.++||-+.-++.|..++... .-...+.++|+.|+||||+|+.+.+...-... |.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 36899999999998888532 22445689999999999999999864211111 1111
Q ss_pred EEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceE
Q 045152 243 IWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQE-YITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKI 321 (533)
Q Consensus 243 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~I 321 (533)
+++...... ...++.++...+.. ...+++-++|||+++..+...++.|+..+.......++
T Consensus 91 iEidAas~~------------------kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRT------------------KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEecccccc------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 111111001 11112222222221 12466779999999888777788888877665556666
Q ss_pred EEEecc-hHHHhh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 322 LITTRD-RSVALQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 322 iiTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
|++|.+ ..+... ......|++++|+.++...++.+.+-.. ....-.+....|++.++|.|.-+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E----gI~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE----QLPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 665544 433322 2335789999999999999988765311 11122455688899999988644433
No 29
>PTZ00202 tuzin; Provisional
Probab=98.55 E-value=2.6e-06 Score=85.11 Aligned_cols=167 Identities=14% Similarity=0.212 Sum_probs=102.3
Q ss_pred ccCCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHH
Q 045152 179 IDEGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 258 (533)
Q Consensus 179 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 258 (533)
.+.+.|+||+++...+...|...+. ...+++.|+|++|+|||||++.+.... ++ ..++++.. +..+++.
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l----~~-~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKE----GM-PAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcC----Cc-eEEEECCC---CHHHHHH
Confidence 4556899999999999999965432 345699999999999999999998632 22 13333322 6799999
Q ss_pred HHHHHhCCCCCCC--ccHHHHHHHHHHHh-C-CceEEEEEeCCCCCCc-cccchhhhcccCCCCCceEEEEecchHHHhh
Q 045152 259 AIIEGLGVSASGL--SEFESLMKQIQEYI-T-RKKFFLVLDDVWDGDY-KKWNPFFSCLKNGHHESKILITTRDRSVALQ 333 (533)
Q Consensus 259 ~il~~l~~~~~~~--~~~~~l~~~l~~~l-~-~kr~LlVLDdv~~~~~-~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~~ 333 (533)
.++.+++.+.... .-...+.+.+.+.- . +++.+||+-=-...+. ..+.+. ..|.....-|.|++---.+.+...
T Consensus 328 ~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 328 SVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchh
Confidence 9999999743322 11233344443322 3 6777777653321110 011111 122333445667765444433221
Q ss_pred ---hCCCCeeeCCCCChHhhHHHHHHh
Q 045152 334 ---LGSIDIIPVKELAEEECWSLLERL 357 (533)
Q Consensus 334 ---~~~~~~~~l~~L~~~~~~~Lf~~~ 357 (533)
......|.+++++.+++.++..+.
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhc
Confidence 122467889999999998887664
No 30
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.55 E-value=1.7e-06 Score=93.34 Aligned_cols=201 Identities=21% Similarity=0.164 Sum_probs=120.3
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccC---CceEEEEeCCc---hhHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVSDT---FEEIRV 256 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~~l 256 (533)
+++|++..+..+...+.. .....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...+
T Consensus 155 ~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 155 EIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred hceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 589999999988877732 234579999999999999999998754332222 12345544321 112222
Q ss_pred HHH---------------HHHHhCCC------------------CCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCcc
Q 045152 257 AKA---------------IIEGLGVS------------------ASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYK 303 (533)
Q Consensus 257 ~~~---------------il~~l~~~------------------~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~ 303 (533)
... .+...+.. ..+.. ....+..+.+.+.++++.++-|+.|..+..
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 111 11111110 00111 133577888888889999998888777666
Q ss_pred ccchhhhcccCCCCCceEEE--EecchHH-Hhhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHh
Q 045152 304 KWNPFFSCLKNGHHESKILI--TTRDRSV-ALQL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAH 379 (533)
Q Consensus 304 ~~~~l~~~l~~~~~gs~Iii--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~ 379 (533)
.|+.+...+....+...+++ ||++... ...+ .....+.+.+++.++.+.++.+.+-.. ... --.++...|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~-~v~---ls~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKI-NVH---LAAGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHc-CCC---CCHHHHHHHHH
Confidence 78887776666555555555 5664321 1111 223567899999999999999876411 111 11344555666
Q ss_pred HhCCCcchhHHHHHH
Q 045152 380 KCKGLPLAAKVIWNL 394 (533)
Q Consensus 380 ~c~GlPLai~~~~~~ 394 (533)
.+..-+.++..++.+
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 665556777666443
No 31
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.54 E-value=1.5e-07 Score=89.51 Aligned_cols=91 Identities=19% Similarity=0.094 Sum_probs=63.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc--hhHHHHHHHHHHHhCCCCCCCcc------HHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT--FEEIRVAKAIIEGLGVSASGLSE------FESLMK 279 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~l~~~il~~l~~~~~~~~~------~~~l~~ 279 (533)
....++|+|++|+|||||++.+|++.... +|+.++|+++... +++.++++.+...+-....+... ......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999975444 8999999998776 78999999983333222111111 112222
Q ss_pred HHHHH-hCCceEEEEEeCCCC
Q 045152 280 QIQEY-ITRKKFFLVLDDVWD 299 (533)
Q Consensus 280 ~l~~~-l~~kr~LlVLDdv~~ 299 (533)
..... -.+++.++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 22222 257899999999943
No 32
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1e-06 Score=93.01 Aligned_cols=178 Identities=18% Similarity=0.175 Sum_probs=110.1
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhc-------------------cCCce
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------NFEKV 242 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~ 242 (533)
.++||.+...+.|..++... .-...+.++|+.|+||||+|+.+.+...-.. .|.-+
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 36899999999999998533 2356789999999999999988865311100 11111
Q ss_pred EEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHH----HhCCceEEEEEeCCCCCCccccchhhhcccCCCCC
Q 045152 243 IWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQE----YITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHE 318 (533)
Q Consensus 243 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~----~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~g 318 (533)
+.++.+.. ...+++...+.. -..+++-++|+|+++..+......+...+.....+
T Consensus 90 iEIDAAs~---------------------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 90 IEIDAASR---------------------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred EEeccccc---------------------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 22221111 112222222211 12356678999999887666777777777665566
Q ss_pred ceEEEEecch-HHH-hhhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhH
Q 045152 319 SKILITTRDR-SVA-LQLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAK 389 (533)
Q Consensus 319 s~IiiTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 389 (533)
.++|++|.+. .+. ........+++++++.++....+.+.+...+ ..--.+....|++.++|.+..+.
T Consensus 149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg----I~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ----IAADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 7777777653 222 2223357899999999999988887663211 11123445778888888775544
No 33
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.53 E-value=6.9e-07 Score=86.03 Aligned_cols=130 Identities=24% Similarity=0.291 Sum_probs=88.1
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh
Q 045152 206 QKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI 285 (533)
Q Consensus 206 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l 285 (533)
++.+..+.+||++|.||||||+.+.+...... ..||..|....-..-.++|+++-. -...+
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq---------------~~~~l 219 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ---------------NEKSL 219 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH---------------HHHhh
Confidence 35678889999999999999999987533222 567776655443333444444321 11234
Q ss_pred CCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEE--EecchHHH---hhhCCCCeeeCCCCChHhhHHHHHHh
Q 045152 286 TRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILI--TTRDRSVA---LQLGSIDIIPVKELAEEECWSLLERL 357 (533)
Q Consensus 286 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Iii--TtR~~~v~---~~~~~~~~~~l~~L~~~~~~~Lf~~~ 357 (533)
..+|.+|.+|.|+..+..+-+.+ ||.-..|.-++| ||.++... ..+....++.|+.|+.++...++.+-
T Consensus 220 ~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 67899999999988765555544 455556776666 77776442 22344678999999999999888873
No 34
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=1.4e-06 Score=91.85 Aligned_cols=195 Identities=14% Similarity=0.159 Sum_probs=111.3
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhc---cCCceEEEEeCCchhHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR---NFEKVIWVCVSDTFEEIRVAKA 259 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~l~~~ 259 (533)
++||-+.-++.|.+++... .-...+.++|+.|+||||+|+.+.+...-.. ..... +.........+.
T Consensus 17 dVIGQe~vv~~L~~al~~g-----RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC~~ 86 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQ-----RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRACTE 86 (700)
T ss_pred HHcCcHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHHHH
Confidence 6899999999999988543 2345678999999999999988865311100 00000 000000000011
Q ss_pred HHHH-----hCCCCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEec-chH
Q 045152 260 IIEG-----LGVSASGLSEFESLMKQIQEY----ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTR-DRS 329 (533)
Q Consensus 260 il~~-----l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR-~~~ 329 (533)
|... +..........+++.+.+... ..++.-++|||+++..+...++.|+..+..-...+.+|++|. ...
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 1000 000000011122222222221 245667899999988877778888887766555566655554 444
Q ss_pred HHhhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 330 VALQL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 330 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
+..-+ .....+.++.++.++..+.+.+.+...+ ...-.+....|++.++|.|..+..+
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg----i~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG----IAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 43222 2357899999999999998887653111 1111344578899999999765444
No 35
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.52 E-value=1.5e-06 Score=86.96 Aligned_cols=180 Identities=16% Similarity=0.093 Sum_probs=104.0
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEe--CCchhHHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV--SDTFEEIRVAKAI 260 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~l~~~i 260 (533)
+++|+++.++.+..++.. +....+.++|++|+||||+|+.+.+.. ....+.. .++.+ +...... ...+.
T Consensus 18 ~~~g~~~~~~~l~~~i~~------~~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~~~-~~~~~ 88 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKE------KNMPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERGID-VIRNK 88 (319)
T ss_pred HhcCcHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccchH-HHHHH
Confidence 588999999999998843 234457999999999999999998642 1112211 12222 2211111 11111
Q ss_pred HHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecch-HHHhhh-CCCC
Q 045152 261 IEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDR-SVALQL-GSID 338 (533)
Q Consensus 261 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~-~v~~~~-~~~~ 338 (533)
+..+....+ .....+-++++|+++.........+...+......+.+|+++... .+.... ....
T Consensus 89 i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 89 IKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 111100000 001235689999996654344455666665545556777776432 111111 2234
Q ss_pred eeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhH
Q 045152 339 IIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAK 389 (533)
Q Consensus 339 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 389 (533)
.+++.+++.++....+...+...+ . .--.+....+++.++|.+.-+.
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~-~---~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEG-I---EITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHH
Confidence 689999999999888887764211 1 1124566888999999876643
No 36
>PLN03025 replication factor C subunit; Provisional
Probab=98.51 E-value=1.2e-06 Score=87.54 Aligned_cols=182 Identities=13% Similarity=0.090 Sum_probs=104.6
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeCCchhHHHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~il 261 (533)
+++|.++.++.|..++.. +....+.++|++|+||||+|+.+.+.. ....|. .++-++.++..+.. ..++++
T Consensus 14 ~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~i 85 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNKI 85 (319)
T ss_pred HhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHHH
Confidence 578988888888877643 234457799999999999999987631 112222 12222222222221 222222
Q ss_pred HHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecch-HHHhhh-CCCCe
Q 045152 262 EGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDR-SVALQL-GSIDI 339 (533)
Q Consensus 262 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~-~v~~~~-~~~~~ 339 (533)
+.+...... ...++.-+++||+++.........+...+......+++|+++... .+...+ .....
T Consensus 86 ~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 86 KMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 211100000 002356689999998765545555655555444567777776542 221111 12457
Q ss_pred eeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhH
Q 045152 340 IPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAK 389 (533)
Q Consensus 340 ~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 389 (533)
+++++++.++....+...+-..+- . --.+....|++.++|-...+.
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi-~---i~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKV-P---YVPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 899999999999888877632111 1 114456788889988765443
No 37
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.47 E-value=1.5e-06 Score=97.05 Aligned_cols=206 Identities=17% Similarity=0.181 Sum_probs=121.0
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE---eCCch---hHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC---VSDTF---EEIRV 256 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---vs~~~---~~~~l 256 (533)
.++||+.+.+.|...+..... +...++.+.|..|||||+|++.|.. .+.+.+...+--. ...+. .....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHH
Confidence 378999999999999976543 5667999999999999999999986 3333321111111 11111 11223
Q ss_pred HHHHHHHh-------------------CCCCC-----------------C-----CccHH-----HHHHHHHHHh-CCce
Q 045152 257 AKAIIEGL-------------------GVSAS-----------------G-----LSEFE-----SLMKQIQEYI-TRKK 289 (533)
Q Consensus 257 ~~~il~~l-------------------~~~~~-----------------~-----~~~~~-----~l~~~l~~~l-~~kr 289 (533)
+++++.++ +.... . ..... .....+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 33333322 11100 0 00000 1222333333 3469
Q ss_pred EEEEEeCCCCCCccccchhhhcccCCCC------CceEEEEecch--HHHhhhCCCCeeeCCCCChHhhHHHHHHhhccC
Q 045152 290 FFLVLDDVWDGDYKKWNPFFSCLKNGHH------ESKILITTRDR--SVALQLGSIDIIPVKELAEEECWSLLERLAFFR 361 (533)
Q Consensus 290 ~LlVLDdv~~~~~~~~~~l~~~l~~~~~------gs~IiiTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~ 361 (533)
.++|+||+++.+....+-+......... ..-.+.|.+.. .+.........+.|.||+..+.-.+.......
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~- 234 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGC- 234 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC-
Confidence 9999999977665444443322221110 11122233322 22222234678999999999999999887631
Q ss_pred CCccccccchHHHHHHHhHhCCCcchhHHHHHHhhcc
Q 045152 362 RSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLLRSK 398 (533)
Q Consensus 362 ~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~ 398 (533)
......+....|+++..|+|+.+..+-..+...
T Consensus 235 ----~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 235 ----TKLLPAPLLELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred ----cccccchHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence 122345667999999999999999888877764
No 38
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.45 E-value=4.8e-06 Score=88.93 Aligned_cols=192 Identities=19% Similarity=0.228 Sum_probs=126.1
Q ss_pred HHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC-chhHHHHHHHHHHHhCCCCCC
Q 045152 192 NELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGVSASG 270 (533)
Q Consensus 192 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~il~~l~~~~~~ 270 (533)
.++.+.|... .+.+.+.|..|+|.|||||+..... ....-..+.|++.++ +.+...+...++..++.-.++
T Consensus 25 ~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 25 PRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred HHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 4555555432 4789999999999999999988864 122335689999865 456778888888887642221
Q ss_pred -------------CccHHHHHHHHHHHhC--CceEEEEEeCCCCCCccccch-hhhcccCCCCCceEEEEecchHHHhhh
Q 045152 271 -------------LSEFESLMKQIQEYIT--RKKFFLVLDDVWDGDYKKWNP-FFSCLKNGHHESKILITTRDRSVALQL 334 (533)
Q Consensus 271 -------------~~~~~~l~~~l~~~l~--~kr~LlVLDdv~~~~~~~~~~-l~~~l~~~~~gs~IiiTtR~~~v~~~~ 334 (533)
..+...+...+..-+. .++..+||||.+-........ +...+.....+-..|+|||+..-....
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la 176 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA 176 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc
Confidence 2234445555555443 367899999997754444444 333445667788899999985322110
Q ss_pred ---CCCCeeeC----CCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHHhhcc
Q 045152 335 ---GSIDIIPV----KELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLLRSK 398 (533)
Q Consensus 335 ---~~~~~~~l----~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~ 398 (533)
-....+++ -.++.+|+-++|..... .+-+ +.-.+.+.+..+|-+-|+..++-.++.+
T Consensus 177 ~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 177 RLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---LPLD----AADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred ceeehhhHHhcChHhhcCChHHHHHHHHHcCC---CCCC----hHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 01222333 25899999999988652 1111 3345788999999999999888777733
No 39
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.44 E-value=1.2e-06 Score=95.56 Aligned_cols=171 Identities=18% Similarity=0.219 Sum_probs=95.0
Q ss_pred ceeechhhHH---HHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHH
Q 045152 183 EVCGRVEEKN---ELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 259 (533)
Q Consensus 183 ~~vGR~~e~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 259 (533)
+|+|.+..+. .+...+.. +....+.++|++|+||||||+.+++. ...+|. .++.+. ....
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~----- 91 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK----- 91 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH-----
Confidence 5788887664 45555532 34567789999999999999999973 333331 111110 0000
Q ss_pred HHHHhCCCCCCCccHHHHHHHHHHHh--CCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEE--ecchH--HHhh
Q 045152 260 IIEGLGVSASGLSEFESLMKQIQEYI--TRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILIT--TRDRS--VALQ 333 (533)
Q Consensus 260 il~~l~~~~~~~~~~~~l~~~l~~~l--~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiT--tR~~~--v~~~ 333 (533)
+.........+.+ .+++.++||||++..+...++.+...+. .|+.++|+ |.++. +...
T Consensus 92 -------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 92 -------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred -------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhH
Confidence 1111111221212 2467799999998765555555554443 34555553 44432 2111
Q ss_pred -hCCCCeeeCCCCChHhhHHHHHHhhccCC---CccccccchHHHHHHHhHhCCCcc
Q 045152 334 -LGSIDIIPVKELAEEECWSLLERLAFFRR---SVDDHEKLEPIGRKIAHKCKGLPL 386 (533)
Q Consensus 334 -~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~---~~~~~~~l~~~~~~I~~~c~GlPL 386 (533)
......+.+++|+.++...++.+.+-... ......--.+....|++.+.|.-.
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 12246799999999999999987653100 000111124455777777777644
No 40
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=3.5e-06 Score=88.17 Aligned_cols=193 Identities=17% Similarity=0.166 Sum_probs=109.6
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCc-eEEEEeCCchhHHHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK-VIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~l~~~il 261 (533)
+++|-+.-+..+...+... .-...+.++|+.|+||||+|+.+.+...-...... ..+..+... .....+.
T Consensus 22 dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~ 92 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFN 92 (507)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHh
Confidence 5789988888888777432 23467889999999999999999763211110000 000000000 0000010
Q ss_pred HHhC-----CCCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEE-EecchHHH
Q 045152 262 EGLG-----VSASGLSEFESLMKQIQEY----ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILI-TTRDRSVA 331 (533)
Q Consensus 262 ~~l~-----~~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Iii-TtR~~~v~ 331 (533)
.... .........+++...+... ..+++-++|+|+++..+...++.|...+......+.+|+ ||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 0000 0000011122222222211 245677899999988766778888887776555666655 44544544
Q ss_pred hhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchh
Q 045152 332 LQL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAA 388 (533)
Q Consensus 332 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 388 (533)
..+ .....+++.+++.++....+.+.+...+. .--.+....|++.++|.+.-+
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi----~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENL----KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 333 23567899999999999999887742111 112345577888898877544
No 41
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=3.8e-06 Score=88.48 Aligned_cols=177 Identities=20% Similarity=0.220 Sum_probs=106.6
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhh-------------------hccCCceE
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV-------------------KRNFEKVI 243 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~F~~~~ 243 (533)
+++|-+..++.+...+... .-...+.++|+.|+||||+|+.+.+...- ...|...+
T Consensus 17 diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 6889999999999888532 23456789999999999999888752110 00122222
Q ss_pred EEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEE
Q 045152 244 WVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEY-ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKIL 322 (533)
Q Consensus 244 wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ii 322 (533)
++.......+. +...+...+... ..+++-++|+|+++..+...++.|...+......+.+|
T Consensus 92 eidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 92 EIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred EeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 33221111111 112222222211 23566799999998877667778888887665566666
Q ss_pred EEecc-hHHHhh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc
Q 045152 323 ITTRD-RSVALQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL 386 (533)
Q Consensus 323 iTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 386 (533)
++|.+ ..+... ......+++++++.++....+.+.+-..+ ...-......|++.++|.+.
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg----i~~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN----INSDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHH
Confidence 55443 333322 23357899999999998888776542111 11123445667788888654
No 42
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.43 E-value=5.9e-07 Score=89.16 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=67.2
Q ss_pred HHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCch--hHHHHHHHHHHHhCCCCCC
Q 045152 193 ELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF--EEIRVAKAIIEGLGVSASG 270 (533)
Q Consensus 193 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~l~~~il~~l~~~~~~ 270 (533)
++++.+..- +.....+|+|++|+||||||+.+|++.... +|+.++||.+++.. ++.++++.+...+-....+
T Consensus 158 rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 455555432 355678999999999999999999975444 89999999999887 7888888886322212111
Q ss_pred CccH------HHHHHHHHHH-hCCceEEEEEeCCCC
Q 045152 271 LSEF------ESLMKQIQEY-ITRKKFFLVLDDVWD 299 (533)
Q Consensus 271 ~~~~------~~l~~~l~~~-l~~kr~LlVLDdv~~ 299 (533)
.... ......-+.. -.++.++|++|++..
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 1111 1111112222 267999999999953
No 43
>PRK04195 replication factor C large subunit; Provisional
Probab=98.42 E-value=2e-06 Score=90.82 Aligned_cols=180 Identities=22% Similarity=0.221 Sum_probs=106.5
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+++|.++.++.+.+|+..... ....+.+.|+|++|+||||+|+.+.+.. .|+ .+-++.++..+.. ....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHHHHH
Confidence 3589999999999999864431 1236789999999999999999998742 232 2333444332222 222222
Q ss_pred HHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc----cccchhhhcccCCCCCceEEEEecchH-HHh-hh-
Q 045152 262 EGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDY----KKWNPFFSCLKNGHHESKILITTRDRS-VAL-QL- 334 (533)
Q Consensus 262 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~----~~~~~l~~~l~~~~~gs~IiiTtR~~~-v~~-~~- 334 (533)
....... .....++-+||||+++.... ..+..+...+.. .+..||+|+.+.. ... .+
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 2211100 00113677999999976432 224445554442 2345666665421 111 11
Q ss_pred CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhH
Q 045152 335 GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAK 389 (533)
Q Consensus 335 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 389 (533)
.....+.+.+++.++....+.+.+...+. .. -.+....|++.++|-...+.
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i---~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGI-EC---DDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHH
Confidence 23567899999999998888876642211 11 13556778888888665544
No 44
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=2.4e-06 Score=91.31 Aligned_cols=192 Identities=19% Similarity=0.205 Sum_probs=109.7
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.++||-+.-++.|...+... .-...+.++|+.|+||||+|+.+.+...-...+. ..+...-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 36899998888888888532 2235578999999999999998876311110000 00000001111111
Q ss_pred HH-------hCCC-CCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecc-hHHH
Q 045152 262 EG-------LGVS-ASGLSEFESLMKQIQEY-ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRD-RSVA 331 (533)
Q Consensus 262 ~~-------l~~~-~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~-~~v~ 331 (533)
.. +... .....+..++...+... ..+++-++|||+++..+....+.|+..+.......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 0000 00111122222222211 2456779999999888777788888877765556666655544 4443
Q ss_pred h-hhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhH
Q 045152 332 L-QLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAK 389 (533)
Q Consensus 332 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 389 (533)
. .......|++++++.++....+.+.+-..+ ...-......|++.++|.+.-+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~----i~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQ----IPFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 2 223367899999999999998887652111 11123445678888999776443
No 45
>PRK08727 hypothetical protein; Validated
Probab=98.38 E-value=8.3e-06 Score=77.43 Aligned_cols=148 Identities=16% Similarity=0.091 Sum_probs=88.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCce
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKK 289 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 289 (533)
..+.|+|..|+|||.|++.+++. .......+.|+++.+ ....+. ..+ +.+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~-~~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DAL-EAL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHH-HHH-hcC
Confidence 45999999999999999999874 333333556665322 111111 011 111 123
Q ss_pred EEEEEeCCCCCCc-cccch-hhhcccC-CCCCceEEEEecch---------HHHhhhCCCCeeeCCCCChHhhHHHHHHh
Q 045152 290 FFLVLDDVWDGDY-KKWNP-FFSCLKN-GHHESKILITTRDR---------SVALQLGSIDIIPVKELAEEECWSLLERL 357 (533)
Q Consensus 290 ~LlVLDdv~~~~~-~~~~~-l~~~l~~-~~~gs~IiiTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 357 (533)
-+|||||+..... ..|.. +...+.. ...|..||+|++.. ++...+.....+++++++.++-.+++.+.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 4899999964321 22332 3332221 12456699998752 22233334568899999999999999987
Q ss_pred hccCCCccccccchHHHHHHHhHhCCCcchh
Q 045152 358 AFFRRSVDDHEKLEPIGRKIAHKCKGLPLAA 388 (533)
Q Consensus 358 a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 388 (533)
+... .. .--++....|++.+.|-.-.+
T Consensus 175 a~~~-~l---~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRR-GL---ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHc-CC---CCCHHHHHHHHHhCCCCHHHH
Confidence 7522 11 122456677888888766554
No 46
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.38 E-value=3.9e-07 Score=106.12 Aligned_cols=86 Identities=29% Similarity=0.568 Sum_probs=66.9
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
+++|+.|.+++|..+..+|. +..+++|+.|++.+|.++..+| ..++.|++|+.|++++|+++..+|.++ ++++|++
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp--~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~ 708 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELP--SSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR 708 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccc--hhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence 55677777777777777774 6667888888888888888888 677888888888888888888888766 6788888
Q ss_pred eeccCCchhH
Q 045152 500 LGMEGSPLLE 509 (533)
Q Consensus 500 L~~~~c~~l~ 509 (533)
|++++|+.+.
T Consensus 709 L~Lsgc~~L~ 718 (1153)
T PLN03210 709 LNLSGCSRLK 718 (1153)
T ss_pred EeCCCCCCcc
Confidence 8888886543
No 47
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.38 E-value=1.2e-05 Score=81.73 Aligned_cols=181 Identities=13% Similarity=0.155 Sum_probs=107.8
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhh--------------------ccCCce
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK--------------------RNFEKV 242 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~ 242 (533)
+++|.+..++.+.+++... .-...+.++|++|+||||+|+.+.....-. .+++.
T Consensus 15 ~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~- 88 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV- 88 (355)
T ss_pred hccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-
Confidence 5799999999999988533 234578899999999999998876531100 02221
Q ss_pred EEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceE
Q 045152 243 IWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEY-ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKI 321 (533)
Q Consensus 243 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~I 321 (533)
+++..+...... +...+.+.+... ..+++-++|+|++...+......+...+......+.+
T Consensus 89 ~~~~~~~~~~~~------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 89 IEIDAASNNGVD------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred EEeeccccCCHH------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 222211111110 111122211111 1245558899999665544566677777555556667
Q ss_pred EEEecchH-HHhhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 322 LITTRDRS-VALQL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 322 iiTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
|++|.+.. +...+ .....+++.+++.++...++...+-..+ . .--.+....+++.++|.|..+...
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g-~---~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEG-I---KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCChHHHHHH
Confidence 77765543 22222 2345788999999999888887663111 1 111456788899999988765443
No 48
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=4.5e-06 Score=89.07 Aligned_cols=196 Identities=15% Similarity=0.175 Sum_probs=107.9
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhcc--CCceEEEEeCCchhHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSDTFEEIRVAKA 259 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~l~~~ 259 (533)
.++||-+.-+..|..++... .-...+.++|+.|+||||+|+.+.+...-... ...... ...+.-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 36899888888888888543 23467789999999999999888542100000 000000 00000011111
Q ss_pred HHHHh-----CCCCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecc-hH
Q 045152 260 IIEGL-----GVSASGLSEFESLMKQIQEY----ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRD-RS 329 (533)
Q Consensus 260 il~~l-----~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~-~~ 329 (533)
|...- ..........+++.+.+... ..++.-++|||+++..+...++.++..+......+.+|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 10000 00000011122222222211 1244558999999888777788888777665556666655543 33
Q ss_pred HHh-hhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHH
Q 045152 330 VAL-QLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKV 390 (533)
Q Consensus 330 v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 390 (533)
+.. .......+++++++.++....+.+.+...+- ..-.+....|++.++|.+.-+..
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi----~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV----PAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 332 2233578999999999999888876531111 11234557788888887755443
No 49
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.4e-06 Score=89.42 Aligned_cols=194 Identities=16% Similarity=0.113 Sum_probs=109.2
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 262 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 262 (533)
+++|-+.-+..|..++... .-...+.++|+.|+||||+|+.+.+...- .+... ...+....+-..+...+..
T Consensus 19 dvVGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc-e~~~~--~~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKRLNC-ENPIG--NEPCNECTSCLEITKGISS 90 (484)
T ss_pred HHhChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhcCc-ccccC--ccccCCCcHHHHHHccCCc
Confidence 5899888888888888532 12356899999999999999999763111 11000 0000001111111111000
Q ss_pred Hh---CC-CCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEe-cchHHHhhh-C
Q 045152 263 GL---GV-SASGLSEFESLMKQIQEY-ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITT-RDRSVALQL-G 335 (533)
Q Consensus 263 ~l---~~-~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTt-R~~~v~~~~-~ 335 (533)
.+ .. ......+..++...+... ..++.-++|+|+++..+...++.|+..+........+|++| ....+...+ .
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 00 00 001111222233333221 24566799999998887777888877776544455555444 434443222 3
Q ss_pred CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchh
Q 045152 336 SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAA 388 (533)
Q Consensus 336 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 388 (533)
....|.+.+++.++..+.+.+.+-..+ ..--.+....|++.++|.+.-+
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~Eg----i~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIEN----VQYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCChHHHH
Confidence 356799999999999888887653211 1112455677888888888544
No 50
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.37 E-value=6.3e-06 Score=78.08 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=87.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITR 287 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 287 (533)
....+.|+|..|+|||+||+.+++.. .... ....+++...... . + ... .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~-~~~~-~~~~~i~~~~~~~------~----~------------------~~~-~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADA-SYGG-RNARYLDAASPLL------A----F------------------DFD-P 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEehHHhHH------H----H------------------hhc-c
Confidence 34678999999999999999998742 1222 2344454322110 0 0 011 2
Q ss_pred ceEEEEEeCCCCCCccccchhhhcccCC-CCCc-eEEEEecchHHHh--------hhCCCCeeeCCCCChHhhHHHHHHh
Q 045152 288 KKFFLVLDDVWDGDYKKWNPFFSCLKNG-HHES-KILITTRDRSVAL--------QLGSIDIIPVKELAEEECWSLLERL 357 (533)
Q Consensus 288 kr~LlVLDdv~~~~~~~~~~l~~~l~~~-~~gs-~IiiTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~Lf~~~ 357 (533)
..-++|+||+...+...-..+...+... ..|. .+|+|++...... .+.....+++++++.++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2347899999654332223344444321 2334 3666665432211 2222467899999998877777654
Q ss_pred hccCCCccccccchHHHHHHHhHhCCCcchhHHHHHHh
Q 045152 358 AFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLL 395 (533)
Q Consensus 358 a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 395 (533)
+- ... ..--++....+++.+.|++..+..+-..|
T Consensus 170 ~~-~~~---v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AA-ERG---LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HH-HcC---CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 32 111 11224567788889999998877665444
No 51
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=5.6e-06 Score=86.28 Aligned_cols=201 Identities=18% Similarity=0.186 Sum_probs=112.2
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhcc-------------------CCce
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN-------------------FEKV 242 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~ 242 (533)
.++||.+.-...|...+... .-...+.++|++|+||||+|+.+.+...-... +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 35899888877777777432 23456899999999999999988753111000 0011
Q ss_pred EEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceE
Q 045152 243 IWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQE-YITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKI 321 (533)
Q Consensus 243 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~I 321 (533)
..++.+....... ...+...+.. ...+++-++|+|+++.......+.+...+........+
T Consensus 89 ~el~aa~~~gid~------------------iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDE------------------IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHH------------------HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 2222211111111 1111111111 12346679999999765544556666666554444544
Q ss_pred EEEecc-hHHHhhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCC-CcchhHHHHHHhhc-
Q 045152 322 LITTRD-RSVALQL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKG-LPLAAKVIWNLLRS- 397 (533)
Q Consensus 322 iiTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~~~L~~- 397 (533)
|++|.+ ..+...+ .....+.+.+++.++....+.+.+...+- .--.+....|++.++| ++.++..+-.+...
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi----~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~ 226 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI----EIDREALSFIAKRASGGLRDALTMLEQVWKFS 226 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 444443 3343322 23567899999999998888877632111 1124456778887765 46666666554332
Q ss_pred --ccchHHHHHHHh
Q 045152 398 --KSTVKEWQRILD 409 (533)
Q Consensus 398 --~~~~~~w~~~l~ 409 (533)
+-+.+....++.
T Consensus 227 ~~~It~e~V~~~l~ 240 (472)
T PRK14962 227 EGKITLETVHEALG 240 (472)
T ss_pred CCCCCHHHHHHHHc
Confidence 125555555543
No 52
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=4.6e-06 Score=86.61 Aligned_cols=181 Identities=20% Similarity=0.178 Sum_probs=109.5
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcch------------------hhh-ccCCce
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND------------------EVK-RNFEKV 242 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~------------------~~~-~~F~~~ 242 (533)
.++||-+..++.+...+..+ .-...+.++|+.|+||||+|+.+...- .+. ..+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 36899888888888777432 234578999999999999998886410 000 112223
Q ss_pred EEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEE
Q 045152 243 IWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKIL 322 (533)
Q Consensus 243 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ii 322 (533)
+.++.+....+.+ .+++++..... -..+++-++|+|+++..+....+.|...+....+.+.+|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 3333332222222 11222211100 013456689999997766666777888877666667666
Q ss_pred EEec-chHHHhhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchh
Q 045152 323 ITTR-DRSVALQL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAA 388 (533)
Q Consensus 323 iTtR-~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 388 (533)
++|. ...+...+ .....+++.+++.++....+.+.+...+. .--.+....|++.++|.+..+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 6554 34443322 33577899999999999888887642111 112344577888888877543
No 53
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=4.6e-06 Score=87.81 Aligned_cols=183 Identities=15% Similarity=0.136 Sum_probs=108.3
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhh-------------------ccCCce
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK-------------------RNFEKV 242 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~ 242 (533)
.++||-+.-++.|..++... .-...+.++|+.|+||||+|+.+.+...-. ..|.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~-----~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ-----YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 36899999999999999533 234567899999999999998886531111 111112
Q ss_pred EEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEE
Q 045152 243 IWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKIL 322 (533)
Q Consensus 243 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ii 322 (533)
+.++.+....+.++ +++++.+.. .-..++.-++|+|+++..+....+.+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 23322222222211 122221111 0113456689999998877667777877777665667777
Q ss_pred EEecc-hHHHhh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHH
Q 045152 323 ITTRD-RSVALQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKV 390 (533)
Q Consensus 323 iTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 390 (533)
++|.+ ..+... ......+++++++.++....+.+.+-..+- .--.+....|++.++|.+.-+..
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi----~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV----EFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHH
Confidence 66544 333222 222567889999999887776665431111 11133456788888887765433
No 54
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.34 E-value=1.4e-05 Score=76.88 Aligned_cols=198 Identities=19% Similarity=0.203 Sum_probs=119.4
Q ss_pred hHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEEEeCCchhHHHHHHHHHHHhC
Q 045152 190 EKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLG 265 (533)
Q Consensus 190 e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~ 265 (533)
-++++.+.|... .......+.|||.+|.|||++++++....-... .--.++.|.+....+...++..|+.+++
T Consensus 45 ~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 45 ALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 345666656443 346678899999999999999999886421111 1115777888889999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHhCC-ceEEEEEeCCCCC---Cccccchh---hhcccCCCCCceEEEEecchHHHhh-----
Q 045152 266 VSASGLSEFESLMKQIQEYITR-KKFFLVLDDVWDG---DYKKWNPF---FSCLKNGHHESKILITTRDRSVALQ----- 333 (533)
Q Consensus 266 ~~~~~~~~~~~l~~~l~~~l~~-kr~LlVLDdv~~~---~~~~~~~l---~~~l~~~~~gs~IiiTtR~~~v~~~----- 333 (533)
.+.........+.......++. +--+||+|++++. ....-..+ ...+.+...=+-|.+-|+...-+-.
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 8766666666666666566644 4558999999763 11111122 2333333334445555554322211
Q ss_pred hCCCCeeeCCCCChHh-hHHHHHHhhcc-CCCccccccchHHHHHHHhHhCCCcchhHH
Q 045152 334 LGSIDIIPVKELAEEE-CWSLLERLAFF-RRSVDDHEKLEPIGRKIAHKCKGLPLAAKV 390 (533)
Q Consensus 334 ~~~~~~~~l~~L~~~~-~~~Lf~~~a~~-~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 390 (533)
.+....+.++....++ ...|+...... .-.....-...+++..|...++|+.--+..
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 1124567777766554 34444322110 111122233478899999999998755443
No 55
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=5e-06 Score=88.72 Aligned_cols=179 Identities=15% Similarity=0.182 Sum_probs=107.7
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhcc-------------------CCce
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN-------------------FEKV 242 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~ 242 (533)
.+++|.+..+..|..++... .-...+.++|+.|+||||+|+.+.+...-... |.-.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 36899999999999998533 23467899999999999999888653110000 1111
Q ss_pred EEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHH----HhCCceEEEEEeCCCCCCccccchhhhcccCCCCC
Q 045152 243 IWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQE----YITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHE 318 (533)
Q Consensus 243 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~----~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~g 318 (533)
+.+..+... ..+.+...+.. -..+++-++|||+++..+......|+..+......
T Consensus 91 lEidaAs~~---------------------gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 91 LEIDAASNT---------------------GIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred EEEeccccC---------------------CHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 122211111 11222222211 12346678999999776555566677777654455
Q ss_pred ceEEEEecch-HHHh-hhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHH
Q 045152 319 SKILITTRDR-SVAL-QLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKV 390 (533)
Q Consensus 319 s~IiiTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 390 (533)
+++|++|.+. .+.. ..+....+.+.+++.++....+.+.+-..+ ..--.+....|++.++|.+.-+..
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg----i~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK----IAYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC----CCcCHHHHHHHHHHhCCCHHHHHH
Confidence 6677766543 2221 123345688899999999998887663211 111234568889999998865443
No 56
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=9.8e-06 Score=81.29 Aligned_cols=194 Identities=17% Similarity=0.181 Sum_probs=114.4
Q ss_pred CCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhcc----CCceEEEEeCCchhHHHH
Q 045152 181 EGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFEEIRV 256 (533)
Q Consensus 181 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~l 256 (533)
-..++|-++..+.+...+..+ .-...+.|+|+.|+||||+|..+.+. +-.+ +..... .........
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~~~---~~~~~~c~~ 91 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPETL---ADPDPASPV 91 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCcccc---CCCCCCCHH
Confidence 346899999999999988543 23457899999999999999877653 1110 111100 000001112
Q ss_pred HHHHHHH-------hCCC--C-----CCCccHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccccchhhhcccCCCC
Q 045152 257 AKAIIEG-------LGVS--A-----SGLSEFESLMKQIQEYI-----TRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHH 317 (533)
Q Consensus 257 ~~~il~~-------l~~~--~-----~~~~~~~~l~~~l~~~l-----~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~ 317 (533)
.+.+... +..+ . ......+++. .+.+++ .+++-++|+|+++..+....+.+...+.....
T Consensus 92 c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~ 170 (351)
T PRK09112 92 WRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPA 170 (351)
T ss_pred HHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence 2222211 1000 0 0111233332 333333 35667999999988877777777777765544
Q ss_pred CceEEEEecc-hHHHhhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 318 ESKILITTRD-RSVALQL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 318 gs~IiiTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
...+|++|.. ..+.... .....+++.+++.++..+++.+... ... .-.+....|++.++|.|..+..+
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~---~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGS---SQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhc---ccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5555554443 3332222 2356899999999999999987432 111 11345678899999999876544
No 57
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.32 E-value=1.5e-05 Score=73.15 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=64.4
Q ss_pred CceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecch-HHHhhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCc
Q 045152 287 RKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDR-SVALQL-GSIDIIPVKELAEEECWSLLERLAFFRRSV 364 (533)
Q Consensus 287 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 364 (533)
+.+-++|+||++..+....+.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~---g--- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ---G--- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc---C---
Confidence 456789999997766566777887777655667777777653 222222 22468999999999998888775 1
Q ss_pred cccccchHHHHHHHhHhCCCcch
Q 045152 365 DDHEKLEPIGRKIAHKCKGLPLA 387 (533)
Q Consensus 365 ~~~~~l~~~~~~I~~~c~GlPLa 387 (533)
. -.+.+..|++.++|.|..
T Consensus 169 i----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 I----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred C----CHHHHHHHHHHcCCCccc
Confidence 1 145678999999999864
No 58
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=1.1e-05 Score=82.10 Aligned_cols=180 Identities=13% Similarity=0.058 Sum_probs=106.9
Q ss_pred ceeechhhHHHHHHHHhCCCcc----CCCCeEEEEEEcCCCChHHHHHHHHhcchhhh------------------ccCC
Q 045152 183 EVCGRVEEKNELLSKLLCESSE----QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK------------------RNFE 240 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------------------~~F~ 240 (533)
+++|-+.-++.|...+...... +..-...+.++|+.|+|||++|+.+.+.-.-. ..++
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 5889888888899888643210 00135678899999999999998875421000 0011
Q ss_pred ceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHH---HHHHH-HhCCceEEEEEeCCCCCCccccchhhhcccCCC
Q 045152 241 KVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLM---KQIQE-YITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGH 316 (533)
Q Consensus 241 ~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~---~~l~~-~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~ 316 (533)
-..++.... .....+++. ..+.. -..+++-++|+|+++..+......+...+....
T Consensus 86 D~~~i~~~~--------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~ 145 (394)
T PRK07940 86 DVRVVAPEG--------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP 145 (394)
T ss_pred CEEEecccc--------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC
Confidence 111221100 011122222 11111 112455688889998877666666777776655
Q ss_pred CCceEEEEecch-HHHhh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 317 HESKILITTRDR-SVALQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 317 ~gs~IiiTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
.+..+|++|.+. .+... ......+.+.+++.++..+.+..... . -.+.+..++..++|.|..+..+
T Consensus 146 ~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 146 PRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----V----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 667666666653 33322 23357899999999999888874321 1 1344677899999999765433
No 59
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=1.8e-05 Score=79.08 Aligned_cols=204 Identities=12% Similarity=0.070 Sum_probs=122.4
Q ss_pred cCCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHH
Q 045152 180 DEGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 259 (533)
Q Consensus 180 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 259 (533)
.++.++||+.|+..+.+|+...- .....+.+-|.|-+|.|||.+...++.+..-...-..+++++...-.....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 45679999999999999986554 2356788999999999999999999986332222235577776665567788888
Q ss_pred HHHHhCCCCCCCccHHHHHHHHHHHhCC--ceEEEEEeCCCCCCccccchhhhcccC-CCCCceEEEEecch--HH----
Q 045152 260 IIEGLGVSASGLSEFESLMKQIQEYITR--KKFFLVLDDVWDGDYKKWNPFFSCLKN-GHHESKILITTRDR--SV---- 330 (533)
Q Consensus 260 il~~l~~~~~~~~~~~~l~~~l~~~l~~--kr~LlVLDdv~~~~~~~~~~l~~~l~~-~~~gs~IiiTtR~~--~v---- 330 (533)
|...+...........+....+.....+ .-+|+|||.++.-....-..+...|.+ .-+++|+|+.---. +.
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 8877722211111124445555555544 368999999965322222223333332 23456665532211 11
Q ss_pred -Hhh---hC-CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchh
Q 045152 331 -ALQ---LG-SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAA 388 (533)
Q Consensus 331 -~~~---~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 388 (533)
... .+ ....+..+|-+.++-.++|..+.-. ......+......+++|+.|.-=-+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~---~~t~~~~~~Aie~~ArKvaa~SGDl 365 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE---ESTSIFLNAAIELCARKVAAPSGDL 365 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc---ccccccchHHHHHHHHHhccCchhH
Confidence 111 11 1456788899999999999988742 2222223334444555555544333
No 60
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=1.9e-05 Score=79.72 Aligned_cols=191 Identities=15% Similarity=0.108 Sum_probs=111.7
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccC--C------ceEEEEeCCchhH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF--E------KVIWVCVSDTFEE 253 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~------~~~wv~vs~~~~~ 253 (533)
.+++|-++-.+.+.+.+..+ .-...+.++|+.|+||+|+|..+.+.---.... . ...-+| ..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~--~~--- 88 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID--PD--- 88 (365)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC--CC---
Confidence 46899999999999888543 234578899999999999997665421000000 0 000000 00
Q ss_pred HHHHHHHHHHh-------CC---CC----CCCccHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccccchhhhcccC
Q 045152 254 IRVAKAIIEGL-------GV---SA----SGLSEFESLMKQIQEYI-----TRKKFFLVLDDVWDGDYKKWNPFFSCLKN 314 (533)
Q Consensus 254 ~~l~~~il~~l-------~~---~~----~~~~~~~~l~~~l~~~l-----~~kr~LlVLDdv~~~~~~~~~~l~~~l~~ 314 (533)
....+.+...- .. +. .....++++. .+.+.+ .+++-++|+||++..+......|...+..
T Consensus 89 c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 89 HPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred ChHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 00111111000 00 00 0111233322 233333 24567899999988877777788877776
Q ss_pred CCCCceEEEEecchH-HHhh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 315 GHHESKILITTRDRS-VALQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 315 ~~~gs~IiiTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
...++.+|++|.+.. +... ......+.+.+++.++..+++..... . .. ......++..++|.|+.+..+
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~--~---~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP--D---LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc--c---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 555676777776653 3222 23367899999999999999987532 1 11 111267889999999866544
No 61
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.30 E-value=5.6e-06 Score=84.29 Aligned_cols=180 Identities=17% Similarity=0.135 Sum_probs=99.4
Q ss_pred CCceeechhhHHHHHHHHhCCCcc-------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhH
Q 045152 181 EGEVCGRVEEKNELLSKLLCESSE-------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE 253 (533)
Q Consensus 181 ~~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 253 (533)
..++.|+++.++++.+.+...-.. +-...+.+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----
Confidence 347899999999998877422110 0123556899999999999999999874 33232 22221
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCCc-----------c---ccchhhhcccC--CC
Q 045152 254 IRVAKAIIEGLGVSASGLSEFESLMKQIQEYI-TRKKFFLVLDDVWDGDY-----------K---KWNPFFSCLKN--GH 316 (533)
Q Consensus 254 ~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVLDdv~~~~~-----------~---~~~~l~~~l~~--~~ 316 (533)
..+.... ++ ........+.+.. ...+.+|+|||++.... . .+..+...+.. ..
T Consensus 190 ~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111110 00 0111122222222 34678999999965310 0 11112222211 13
Q ss_pred CCceEEEEecchHHHh-h----hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc
Q 045152 317 HESKILITTRDRSVAL-Q----LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL 386 (533)
Q Consensus 317 ~gs~IiiTtR~~~v~~-~----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 386 (533)
.+.+||.||....... . ......+.++..+.++..++|+.++.... .....+ ...+++.+.|..-
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~-l~~~~~----~~~la~~t~g~sg 329 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK-LAEDVD----LEAIAKMTEGASG 329 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCC-CCccCC----HHHHHHHcCCCCH
Confidence 4667888887543221 1 12245789999999999999998764221 111112 3667778877653
No 62
>PRK09087 hypothetical protein; Validated
Probab=98.29 E-value=1.1e-05 Score=75.98 Aligned_cols=141 Identities=15% Similarity=0.182 Sum_probs=86.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
...+.|+|+.|+|||+|++.+++.. ...+++.. .+..+++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHhh---------------------hc-
Confidence 3568999999999999999888642 12244321 1111111111 11
Q ss_pred eEEEEEeCCCCCCccccchhhhcccC-CCCCceEEEEecc---------hHHHhhhCCCCeeeCCCCChHhhHHHHHHhh
Q 045152 289 KFFLVLDDVWDGDYKKWNPFFSCLKN-GHHESKILITTRD---------RSVALQLGSIDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 289 r~LlVLDdv~~~~~~~~~~l~~~l~~-~~~gs~IiiTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
-++++||+..... .-+.+...+.. ...|..||+|++. +++...+.....+++++++.++-.+++.+.+
T Consensus 89 -~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 2788999954321 11223333321 1336779998873 3344444556789999999999999999887
Q ss_pred ccCCCccccccchHHHHHHHhHhCCCcchhHH
Q 045152 359 FFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKV 390 (533)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 390 (533)
-.. . ..--+++..-|++.+.|..-++..
T Consensus 167 ~~~-~---~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 ADR-Q---LYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHc-C---CCCCHHHHHHHHHHhhhhHHHHHH
Confidence 421 1 112256678888888888777653
No 63
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.29 E-value=2.1e-05 Score=74.70 Aligned_cols=152 Identities=18% Similarity=0.181 Sum_probs=90.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
...+.|+|+.|+|||+|++.+++. ....-..+.++++..... . ..+..+.+. +
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~---~-----------------~~~~~~~~~-----~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW---F-----------------VPEVLEGME-----Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh---h-----------------hHHHHHHhh-----h
Confidence 457899999999999999998874 222233455665432100 0 011111111 1
Q ss_pred eEEEEEeCCCCCCc-cccch-hhhcccCC-CCC-ceEEEEecch---------HHHhhhCCCCeeeCCCCChHhhHHHHH
Q 045152 289 KFFLVLDDVWDGDY-KKWNP-FFSCLKNG-HHE-SKILITTRDR---------SVALQLGSIDIIPVKELAEEECWSLLE 355 (533)
Q Consensus 289 r~LlVLDdv~~~~~-~~~~~-l~~~l~~~-~~g-s~IiiTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 355 (533)
.-+++|||+..... ..|+. +...+... ..| .++|+||+.. ++...+.....+++++++.++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 23789999965421 23443 22222211 123 4688988754 333344445789999999999999998
Q ss_pred HhhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 356 RLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 356 ~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
+.+... . -.--+++..-|++.+.|..-++..+
T Consensus 178 ~~a~~~-~---~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 178 LRARLR-G---FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHc-C---CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 866421 1 1122567788888888877665443
No 64
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=9.7e-06 Score=85.61 Aligned_cols=189 Identities=19% Similarity=0.209 Sum_probs=104.6
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+++|.+.-++.+..++... .-...+.++|+.|+||||+|+.+.+...-.. |.... ..+.....+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHH
Confidence 36899999999999888533 2346788999999999999988865311000 11100 000011111111
Q ss_pred HHh-------CCCC-CCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEe-cchHHH
Q 045152 262 EGL-------GVSA-SGLSEFESLMKQIQEY-ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITT-RDRSVA 331 (533)
Q Consensus 262 ~~l-------~~~~-~~~~~~~~l~~~l~~~-l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTt-R~~~v~ 331 (533)
... .... ....+...+...+... ..+++-++|+|+++..+...+..|...+......+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 100 0000 0001112222211111 12344469999998766566777777776555556565554 433443
Q ss_pred hh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc
Q 045152 332 LQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL 386 (533)
Q Consensus 332 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 386 (533)
.. ......+++.+++.++....+...+...+.. --.+.+..+++.++|.+.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~----Is~eal~~La~lS~GdlR 215 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK----IEDNAIDKIADLADGSLR 215 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHH
Confidence 22 2335679999999999998888765311111 113456778888888664
No 65
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.1e-05 Score=82.80 Aligned_cols=198 Identities=15% Similarity=0.161 Sum_probs=107.5
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE-eCCchhHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC-VSDTFEEIRVAKAI 260 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~l~~~i 260 (533)
.+++|-+.-++.|..++..+ .-...+.++|+.|+||||+|..+.+.-.-...+....|.. +..+...-..-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 36889888888888888432 2245588999999999999988765311111010000000 00000000011111
Q ss_pred HHHhCC-----CCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEe-cchHH
Q 045152 261 IEGLGV-----SASGLSEFESLMKQIQEY----ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITT-RDRSV 330 (533)
Q Consensus 261 l~~l~~-----~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTt-R~~~v 330 (533)
...... ........+++.+..... ..+++-++|+|+++..+...++.+...+....+.+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 100000 000111123332222111 23456688999997766567778888877665666666555 43444
Q ss_pred HhhhC-CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchh
Q 045152 331 ALQLG-SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAA 388 (533)
Q Consensus 331 ~~~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 388 (533)
...+. ....+++.+++.++....+...+-..+ ..--.+.+..|++.++|.+.-+
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g----~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEG----ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHH
Confidence 33221 235688999999999888877653111 1122456788899999977544
No 66
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.3e-05 Score=84.89 Aligned_cols=180 Identities=16% Similarity=0.164 Sum_probs=105.0
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhh-------------------ccCCce
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK-------------------RNFEKV 242 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~ 242 (533)
.+++|-+.-++.+..++... .-...+.++|+.|+||||+|+.+.....-. ..|.-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 36899999999998888543 234567899999999999998886531100 011112
Q ss_pred EEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEE
Q 045152 243 IWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKIL 322 (533)
Q Consensus 243 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ii 322 (533)
+++..+....+.. .++++..+.. .-..+++-++|+|+++..+....+.+...+......+.+|
T Consensus 91 ~ei~~~~~~~vd~-ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAASNTQVDA-MRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeeccccCCHHH-HHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 2222111111111 1111111110 0113566799999998776666777777776655566666
Q ss_pred EEecc-hHHHhh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcch
Q 045152 323 ITTRD-RSVALQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLA 387 (533)
Q Consensus 323 iTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 387 (533)
++|.+ ..+... ......+++++++.++....+.+.+-..+ ...-.+....|++.++|.+.-
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg----i~~~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN----IPFDATALQLLARAAAGSMRD 216 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHH
Confidence 65544 333211 12246789999999999888877553111 111234457788888887753
No 67
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.22 E-value=2.9e-06 Score=84.79 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=63.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc--hhHHHHHHHHHHHhCCCCCCCccH------HHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT--FEEIRVAKAIIEGLGVSASGLSEF------ESLM 278 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~l~~~il~~l~~~~~~~~~~------~~l~ 278 (533)
+....++|+|++|.|||||++.+++... ..+|+..+||.+.+. .++.++++.++..+-....+.... ....
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 3456899999999999999999998633 337999999999866 789999999865443222221111 1122
Q ss_pred HHHHHH-hCCceEEEEEeCCCC
Q 045152 279 KQIQEY-ITRKKFFLVLDDVWD 299 (533)
Q Consensus 279 ~~l~~~-l~~kr~LlVLDdv~~ 299 (533)
+..... -.+++.+|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 222222 257999999999953
No 68
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=1.8e-05 Score=84.63 Aligned_cols=196 Identities=16% Similarity=0.158 Sum_probs=110.0
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCC--ceEEEEeCCchhHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE--KVIWVCVSDTFEEIRVAKA 259 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~l~~~ 259 (533)
.+++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+.+...-..... ...+-.+.. -.-.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHHHH
Confidence 36899999999999988543 2355788999999999999988876311111000 000000000 001111
Q ss_pred HHHHhCC-----CCCCCccHHHHH---HHHHHH-hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEe-cchH
Q 045152 260 IIEGLGV-----SASGLSEFESLM---KQIQEY-ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITT-RDRS 329 (533)
Q Consensus 260 il~~l~~-----~~~~~~~~~~l~---~~l~~~-l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTt-R~~~ 329 (533)
|...... ........+++. ..+... ..+++-++|+|+++..+....+.|...+......+.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1111000 000111122222 222111 12455679999997776566777877776665667676655 3333
Q ss_pred HHhhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHH
Q 045152 330 VALQL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKV 390 (533)
Q Consensus 330 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 390 (533)
+...+ .....+++..++.++....+.+.+-..+. .--.+....|++.++|.+.-+..
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi----~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV----EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 33222 23567899999999999888876531111 11134567788888888865543
No 69
>PRK05642 DNA replication initiation factor; Validated
Probab=98.20 E-value=3.4e-05 Score=73.23 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=90.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
...+.|+|..|+|||.|++.+.+. ....-..++|++.. ++... .. .+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~------~~~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLA------ELLDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHH------HHHhh--------------hH----HHHHhhhhC
Confidence 367899999999999999999863 22222456677532 12111 01 122222222
Q ss_pred eEEEEEeCCCCCC-ccccch-hhhcccC-CCCCceEEEEecchHH---------HhhhCCCCeeeCCCCChHhhHHHHHH
Q 045152 289 KFFLVLDDVWDGD-YKKWNP-FFSCLKN-GHHESKILITTRDRSV---------ALQLGSIDIIPVKELAEEECWSLLER 356 (533)
Q Consensus 289 r~LlVLDdv~~~~-~~~~~~-l~~~l~~-~~~gs~IiiTtR~~~v---------~~~~~~~~~~~l~~L~~~~~~~Lf~~ 356 (533)
=++|+||+.... ...|.. +...+.. ...|..+|+|++...- ...+.....+++++++.++-.++++.
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 268899996432 124443 4444432 2346778888875321 12222346789999999999999996
Q ss_pred hhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 357 LAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 357 ~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
++... ... --+++..-|++.+.|....+..+
T Consensus 178 ka~~~-~~~---l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 178 RASRR-GLH---LTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHc-CCC---CCHHHHHHHHHhcCCCHHHHHHH
Confidence 66421 111 12567788888888876665443
No 70
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=2.6e-05 Score=86.29 Aligned_cols=179 Identities=14% Similarity=0.106 Sum_probs=107.9
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccC---------------------Cc
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF---------------------EK 241 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---------------------~~ 241 (533)
++||.+..++.|..++... .-...+.++|+.|+||||+|+.+.+...-.... ..
T Consensus 16 eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred HhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 6899998899999988533 234568899999999999998886532110110 00
Q ss_pred eEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHH-HHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCce
Q 045152 242 VIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQ-EYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESK 320 (533)
Q Consensus 242 ~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~-~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ 320 (533)
+++++...... ..+..++...+. .-..+++-++|||+++..+...++.|+..+..-...+.
T Consensus 91 v~eidaas~~~------------------Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~ 152 (824)
T PRK07764 91 VTEIDAASHGG------------------VDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLK 152 (824)
T ss_pred EEEecccccCC------------------HHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeE
Confidence 11111111101 111112211111 11235566889999988877778888888877666666
Q ss_pred EEEEecc-hHHHhhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchh
Q 045152 321 ILITTRD-RSVALQL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAA 388 (533)
Q Consensus 321 IiiTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 388 (533)
+|++|.+ ..+...+ .....|++..++.++...++.+.+-.. . ...-.+....|++.++|.+..+
T Consensus 153 fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E-G---v~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 153 FIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE-G---VPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred EEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc-C---CCCCHHHHHHHHHHcCCCHHHH
Confidence 6665543 3444322 336789999999999888887754211 1 1112344577888899977443
No 71
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.9e-05 Score=81.67 Aligned_cols=189 Identities=14% Similarity=0.125 Sum_probs=106.3
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+++|.+.-++.|..++..+ .-...+.++|+.|+||||+|+.+.+...-....+ +-.+. .-...+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg----~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCG----VCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccc----ccHHHHHhh
Confidence 36899999999999988532 2345678999999999999988875311000000 00000 000000110
Q ss_pred HH---------hCCC-CCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEe-cchH
Q 045152 262 EG---------LGVS-ASGLSEFESLMKQIQEY-ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITT-RDRS 329 (533)
Q Consensus 262 ~~---------l~~~-~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTt-R~~~ 329 (533)
.. +... .....+..++...+... ..+++-++|+|+++..+....+.|+..+........+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 0000 00111222222222211 13456689999998877777778888887665566666555 4444
Q ss_pred HHhh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc
Q 045152 330 VALQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL 386 (533)
Q Consensus 330 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 386 (533)
+... ......+++.+++.++..+.+.+.+...+. .--.+....|++.++|.+.
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi----~i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV----VVDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHH
Confidence 4332 233578999999999988888775531111 1113445677888888764
No 72
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=3.2e-05 Score=82.16 Aligned_cols=197 Identities=15% Similarity=0.179 Sum_probs=108.5
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 262 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 262 (533)
+++|-+..++.|...+... .-...+.++|+.|+||||+|+.+.+...-...... ...+.-...+.|..
T Consensus 17 dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~ 84 (624)
T PRK14959 17 EVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQ 84 (624)
T ss_pred HhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhc
Confidence 5789888888888877432 22467889999999999999888763211100000 00000011111111
Q ss_pred HhC-------C-CCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecc-hHHHh
Q 045152 263 GLG-------V-SASGLSEFESLMKQIQE-YITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRD-RSVAL 332 (533)
Q Consensus 263 ~l~-------~-~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~-~~v~~ 332 (533)
... . ......+...+...+.. -..+++-++|||+++..+....+.|...+........+|++|.. ..+..
T Consensus 85 g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPV 164 (624)
T ss_pred CCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhH
Confidence 000 0 00000111111111111 12356678999999777666667777777654445556665544 44432
Q ss_pred h-hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCc-chhHHHHHHh
Q 045152 333 Q-LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLP-LAAKVIWNLL 395 (533)
Q Consensus 333 ~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~~~L 395 (533)
. ......+++++++.++....+...+.... . .--.+....|++.++|.+ .|+..+..++
T Consensus 165 TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-i---~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 165 TIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-V---DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHhhhhccccCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 22346789999999999988887653211 1 112455677888888865 5666655443
No 73
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=5.7e-05 Score=81.47 Aligned_cols=193 Identities=16% Similarity=0.184 Sum_probs=108.4
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+++|-+.-++.|..++... .-...+.++|+.|+||||+|+.+.+.......+.. ....+.....+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~------~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK------GRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCccCHHHHHHh
Confidence 36899999899988888532 23456789999999999999988753111000000 00001111222222
Q ss_pred HHhCCC-----CCCCccHHHH---HHHHHHH-hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecc-hHHH
Q 045152 262 EGLGVS-----ASGLSEFESL---MKQIQEY-ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRD-RSVA 331 (533)
Q Consensus 262 ~~l~~~-----~~~~~~~~~l---~~~l~~~-l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~-~~v~ 331 (533)
...... .......+++ ...+... ..+++-++|+|+++..+....+.|...+......+.+|+++.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 211110 0011112222 2222111 1245678999999766555666777777665556666666543 3333
Q ss_pred hhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhH
Q 045152 332 LQL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAK 389 (533)
Q Consensus 332 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 389 (533)
..+ .....+.++.++.++....+...+...+. . --.+....|++.++|.+..+.
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~---i~~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-N---LEPGALEAIARAATGSMRDAE 219 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 222 22457889999999988888876632111 1 123556788899999886544
No 74
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.13 E-value=4.1e-05 Score=71.85 Aligned_cols=160 Identities=16% Similarity=0.234 Sum_probs=90.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccC--CceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI 285 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l 285 (533)
....+.|+|..|+|||.|.+.+++. +.... ..++++ +..++...+...+... .. ..+.+.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~------~~~~f~~~~~~~~~~~-----~~----~~~~~~~ 95 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYL------SAEEFIREFADALRDG-----EI----EEFKDRL 95 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEE------EHHHHHHHHHHHHHTT-----SH----HHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceee------cHHHHHHHHHHHHHcc-----cc----hhhhhhh
Confidence 4456889999999999999999984 33222 234555 3445555555554331 11 2233344
Q ss_pred CCceEEEEEeCCCCCCcc-ccch-hhhcccC-CCCCceEEEEecch---------HHHhhhCCCCeeeCCCCChHhhHHH
Q 045152 286 TRKKFFLVLDDVWDGDYK-KWNP-FFSCLKN-GHHESKILITTRDR---------SVALQLGSIDIIPVKELAEEECWSL 353 (533)
Q Consensus 286 ~~kr~LlVLDdv~~~~~~-~~~~-l~~~l~~-~~~gs~IiiTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~L 353 (533)
+ .-=+|+|||++..... .|.. +...+.. ...|.+||+|+... ++...+...-.+++++++.++...+
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 4 3347899999664322 2322 2222221 13466899999542 3333444456799999999999999
Q ss_pred HHHhhccCCCccccccchHHHHHHHhHhCCCcchhH
Q 045152 354 LERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAK 389 (533)
Q Consensus 354 f~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 389 (533)
+.+.+...+ .. --+++..-|++.+.+..-.+.
T Consensus 175 l~~~a~~~~-~~---l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 175 LQKKAKERG-IE---LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHTT------S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHhC-CC---CcHHHHHHHHHhhcCCHHHHH
Confidence 998875221 11 224566667777666554443
No 75
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.13 E-value=2.8e-05 Score=80.85 Aligned_cols=167 Identities=19% Similarity=0.188 Sum_probs=99.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
...+.|+|..|.|||+|++.+.+.......-..++++ +..++...+...+.... .....+.+.++ .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 4568999999999999999998732111111233444 33456666666554210 11223333333 3
Q ss_pred eEEEEEeCCCCCCcc-c-cchhhhcccC-CCCCceEEEEecch---------HHHhhhCCCCeeeCCCCChHhhHHHHHH
Q 045152 289 KFFLVLDDVWDGDYK-K-WNPFFSCLKN-GHHESKILITTRDR---------SVALQLGSIDIIPVKELAEEECWSLLER 356 (533)
Q Consensus 289 r~LlVLDdv~~~~~~-~-~~~l~~~l~~-~~~gs~IiiTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 356 (533)
.-+|||||+...... . .+.+...+.. ...|..||+|+... .+...+...-.+.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 448899999654311 1 2234333331 13345688886542 2223333456788999999999999998
Q ss_pred hhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 357 LAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 357 ~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
.+-..+ . ...--+++..-|++.+.|.|..+.-+
T Consensus 287 ~~~~~g-l-~~~l~~evl~~Ia~~~~gd~R~L~ga 319 (450)
T PRK14087 287 EIKNQN-I-KQEVTEEAINFISNYYSDDVRKIKGS 319 (450)
T ss_pred HHHhcC-C-CCCCCHHHHHHHHHccCCCHHHHHHH
Confidence 874211 1 01223567888999999999876544
No 76
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.12 E-value=4.5e-05 Score=85.41 Aligned_cols=152 Identities=21% Similarity=0.210 Sum_probs=84.7
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhcc------CCceEE-EEeCCchhHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN------FEKVIW-VCVSDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~w-v~vs~~~~~~ 254 (533)
.+++||+.++.++++.|.... ..-+.++|++|+||||+|+.+... +... ....+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~----- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL----- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh-----
Confidence 368999999999999986543 335569999999999999988863 2211 122333 22111
Q ss_pred HHHHHHHHHhCCCCCCCccH-HHHHHHHHHHh-CCceEEEEEeCCCCCCc-----cccc---hhhhcccCCCCCceEEEE
Q 045152 255 RVAKAIIEGLGVSASGLSEF-ESLMKQIQEYI-TRKKFFLVLDDVWDGDY-----KKWN---PFFSCLKNGHHESKILIT 324 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~-~~l~~~l~~~l-~~kr~LlVLDdv~~~~~-----~~~~---~l~~~l~~~~~gs~IiiT 324 (533)
+........+. ..+...+.+.- .+++.+|++|+++.... ..-+ .+...+..+ .-++|-|
T Consensus 254 ---------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~Iga 322 (852)
T TIGR03345 254 ---------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAA 322 (852)
T ss_pred ---------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEe
Confidence 00000011111 12222222221 24689999999966321 1111 133333222 2455555
Q ss_pred ecchHHHhh-------hCCCCeeeCCCCChHhhHHHHHHh
Q 045152 325 TRDRSVALQ-------LGSIDIIPVKELAEEECWSLLERL 357 (533)
Q Consensus 325 tR~~~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~ 357 (533)
|..+..... ......+.+++++.++..+++...
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 554333211 123568999999999999997543
No 77
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.12 E-value=1.1e-05 Score=82.07 Aligned_cols=119 Identities=15% Similarity=0.174 Sum_probs=75.7
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.++++.++..+.+...|.. ...|.++|++|+|||++|+.+++.......|+.+.||++++.++..++...+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 4578889999999999853 34688899999999999999987544445778889999998887666553221
Q ss_pred HHhCCCCCCCccH-HHHHHHHHHHh--CCceEEEEEeCCCCCCccc-cchhhhcc
Q 045152 262 EGLGVSASGLSEF-ESLMKQIQEYI--TRKKFFLVLDDVWDGDYKK-WNPFFSCL 312 (533)
Q Consensus 262 ~~l~~~~~~~~~~-~~l~~~l~~~l--~~kr~LlVLDdv~~~~~~~-~~~l~~~l 312 (533)
....+..-. .-..+.+.... .++++++|+|++...+... +..+...+
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 110010000 11112222222 2468999999997655332 44444433
No 78
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=6.4e-05 Score=76.70 Aligned_cols=180 Identities=18% Similarity=0.212 Sum_probs=101.5
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhh------hccCCceEE-EEeCCchhHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV------KRNFEKVIW-VCVSDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------~~~F~~~~w-v~vs~~~~~~ 254 (533)
.+++|.+...+.+...+... .-...+.++|++|+||||+|+.+.+...- ...|...+. +......+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 35789999999999988532 23468889999999999999888653110 011211111 1100000011
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEec-chHHHhh
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTR-DRSVALQ 333 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR-~~~v~~~ 333 (533)
-..++++.+.. .-..+++-++++|++.......+..+...+......+.+|++|. ...+...
T Consensus 92 -~i~~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 92 -DIRNLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred -HHHHHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 11111111110 01123555899999966544456666666654444555655553 3222222
Q ss_pred -hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcch
Q 045152 334 -LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLA 387 (533)
Q Consensus 334 -~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 387 (533)
......+++++++.++....+...+...+ .. --.+....+++.++|.+..
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g-~~---i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEG-IK---FEDDALHIIAQKADGALRD 205 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHhCCCCHHH
Confidence 22345789999999999888887664211 11 1145667788888886553
No 79
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.07 E-value=3.8e-06 Score=61.47 Aligned_cols=59 Identities=20% Similarity=0.415 Sum_probs=49.7
Q ss_pred CccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCc-CCCCCCCcceeeccCCc
Q 045152 445 TTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPD-SLLQITTLKELGMEGSP 506 (533)
Q Consensus 445 ~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~-~~~~l~~L~~L~~~~c~ 506 (533)
++|++|++++| .+..+|. ..+..+++|++|+|++ .+++.+|+ .+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~-~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP-DSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECT-TTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCH-HHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46889999987 5888885 4677899999999996 68888885 67889999999999886
No 80
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.07 E-value=3.4e-05 Score=85.62 Aligned_cols=156 Identities=21% Similarity=0.196 Sum_probs=85.6
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchh---hhccC-CceEEEEeCCchhHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE---VKRNF-EKVIWVCVSDTFEEIRVA 257 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F-~~~~wv~vs~~~~~~~l~ 257 (533)
.+++||+++++++++.|.... ..-+.++|++|+|||++|+.+.+.-. +...+ ...+|.. +...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHh
Confidence 368999999999999885432 33467999999999999998886311 11111 3344421 111111
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCCc---------cccchhhhcccCCCCCceEEEEecc
Q 045152 258 KAIIEGLGVSASGLSEFESLMKQIQEYI-TRKKFFLVLDDVWDGDY---------KKWNPFFSCLKNGHHESKILITTRD 327 (533)
Q Consensus 258 ~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVLDdv~~~~~---------~~~~~l~~~l~~~~~gs~IiiTtR~ 327 (533)
. . .....+.+.....+.+.+ ..++.+|++|+++.... +.-+.+...+..+ .-++|-+|..
T Consensus 251 a----~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~ 320 (731)
T TIGR02639 251 A----G----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTY 320 (731)
T ss_pred h----h----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCH
Confidence 0 0 000112222233333333 34678999999964210 1111233333221 2344444443
Q ss_pred hHHHh------h-hCCCCeeeCCCCChHhhHHHHHHhh
Q 045152 328 RSVAL------Q-LGSIDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 328 ~~v~~------~-~~~~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
++... . ......+.++.++.++..++++...
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 22211 1 1224578999999999999998654
No 81
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.06 E-value=2.8e-05 Score=79.63 Aligned_cols=178 Identities=16% Similarity=0.134 Sum_probs=97.4
Q ss_pred CceeechhhHHHHHHHHhCCCcc-------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSE-------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (533)
.++.|+++.++++.+.+...-.. +-..++.|.++|++|+|||++|+.+++. .... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----H
Confidence 46899999999998876321100 1134567899999999999999999873 2222 333221 1
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCC-----------ccccchhhhccc---C--CCC
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQEYI-TRKKFFLVLDDVWDGD-----------YKKWNPFFSCLK---N--GHH 317 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVLDdv~~~~-----------~~~~~~l~~~l~---~--~~~ 317 (533)
++. ....+ ........+.+.. ...+.+|+|||++... ......+...+. . ...
T Consensus 200 ~l~----~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 200 ELV----QKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHh----Hhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 111 11111 0111222222222 3467899999996421 001111222221 1 123
Q ss_pred CceEEEEecchHHHh-hh----CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCc
Q 045152 318 ESKILITTRDRSVAL-QL----GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLP 385 (533)
Q Consensus 318 gs~IiiTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 385 (533)
+..||.||...+... .+ .....+.+++.+.++-.++|+.+.... ......+ ...+++.+.|.-
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~-~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM-NLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC-CCCCcCC----HHHHHHHcCCCC
Confidence 566777777643322 11 124578999999999999999876421 1111122 355677777755
No 82
>CHL00181 cbbX CbbX; Provisional
Probab=98.05 E-value=0.00024 Score=69.51 Aligned_cols=135 Identities=11% Similarity=0.057 Sum_probs=72.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
...+.++|++|+||||+|+.++........-...-|+.++.. ++ ...+.+.. .......+.. ..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~l----~~~~~g~~-----~~~~~~~l~~-a~-- 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----DL----VGQYIGHT-----APKTKEVLKK-AM-- 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----HH----HHHHhccc-----hHHHHHHHHH-cc--
Confidence 445889999999999999999763111111111124444421 22 22221111 0111222222 22
Q ss_pred eEEEEEeCCCCC---------CccccchhhhcccCCCCCceEEEEecchHHHhhh--------CCCCeeeCCCCChHhhH
Q 045152 289 KFFLVLDDVWDG---------DYKKWNPFFSCLKNGHHESKILITTRDRSVALQL--------GSIDIIPVKELAEEECW 351 (533)
Q Consensus 289 r~LlVLDdv~~~---------~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~ 351 (533)
.-+|+||++... ..+....+...+.....+.+||+++....+.... .....+.+++++.++..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 248999999642 0111223344444444556777777644332211 12457899999999999
Q ss_pred HHHHHhhc
Q 045152 352 SLLERLAF 359 (533)
Q Consensus 352 ~Lf~~~a~ 359 (533)
+++...+-
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 99888764
No 83
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.04 E-value=5e-05 Score=71.37 Aligned_cols=175 Identities=22% Similarity=0.216 Sum_probs=101.5
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+|+|-+.-++.+.-++..... .+..+--+.++|++|.||||||.-+.+...+ .+ -++-.....-
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--n~----k~tsGp~leK-------- 90 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGV--NL----KITSGPALEK-------- 90 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC--Ce----EecccccccC--------
Confidence 3689998888888777754432 4566889999999999999999999874322 21 1111111110
Q ss_pred HHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhccc--------CCCCCce-----------EE
Q 045152 262 EGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLK--------NGHHESK-----------IL 322 (533)
Q Consensus 262 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~--------~~~~gs~-----------Ii 322 (533)
..++...+- .|+ +.=++.+|.++..+...-+.+..+.. ..++++| |=
T Consensus 91 ------------~gDlaaiLt-~Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 91 ------------PGDLAAILT-NLE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred ------------hhhHHHHHh-cCC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 111111111 122 23356678876644322222222211 1133343 33
Q ss_pred EEecchHHHhhhCC--CCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhH
Q 045152 323 ITTRDRSVALQLGS--IDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAK 389 (533)
Q Consensus 323 iTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 389 (533)
.|||.-.+...+.. .-+.+++.-+.+|-.++..+.+..- ...--++-+.+|+++..|-|.-+.
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l----~i~i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL----GIEIDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh----CCCCChHHHHHHHHhccCCcHHHH
Confidence 48887544433322 3467888899999999998877321 111225668999999999997554
No 84
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00017 Score=75.59 Aligned_cols=181 Identities=17% Similarity=0.162 Sum_probs=104.4
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhh---h----------------ccCCceE
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV---K----------------RNFEKVI 243 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~----------------~~F~~~~ 243 (533)
+++|-+.-...+..++... .-...+.++|+.|+||||+|+.+.....- . ..|...+
T Consensus 17 diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred HccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 5789999999999888543 23456778999999999999887652110 0 0011112
Q ss_pred EEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEE
Q 045152 244 WVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEY-ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKIL 322 (533)
Q Consensus 244 wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ii 322 (533)
++..+.... ..+...+...+... ..+++-++|+|+++.......+.+...+........+|
T Consensus 92 eidaas~~g------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 92 EIDAASNRG------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred EEeCccCCC------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 221111111 11112222222111 13566799999997665555666777776554455555
Q ss_pred EEe-cchHHHhh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHH
Q 045152 323 ITT-RDRSVALQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKV 390 (533)
Q Consensus 323 iTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 390 (533)
++| +...+... ......+.+.+++.++....+.+.+-..+- ..-.+....|++.++|.+..+..
T Consensus 154 l~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi----~id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 154 LCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI----EYEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred EEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 555 33333322 223457899999999988888876531111 11234567788888887764433
No 85
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.02 E-value=5.5e-05 Score=75.52 Aligned_cols=148 Identities=15% Similarity=0.130 Sum_probs=84.6
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+++|.++..+.+..++... .-..++.++|++|+||||+|+.+++.. .. ....++.+. ... +..+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-ccH-HHHHHHH
Confidence 46899999999999988532 235677889999999999999998732 11 123344333 111 1111111
Q ss_pred HHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc-cccchhhhcccCCCCCceEEEEecchHH-Hhh-hCCCC
Q 045152 262 EGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDY-KKWNPFFSCLKNGHHESKILITTRDRSV-ALQ-LGSID 338 (533)
Q Consensus 262 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~-~~~~~l~~~l~~~~~gs~IiiTtR~~~v-~~~-~~~~~ 338 (533)
..+.. .. .+.+.+-++|+||++.... .....+...+.....++++|+||..... ... .....
T Consensus 89 ~~~~~-------------~~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 89 TRFAS-------------TV--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHHH-------------hh--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 11100 00 0113455789999965522 2223344445444567788888865421 111 12234
Q ss_pred eeeCCCCChHhhHHHHHH
Q 045152 339 IIPVKELAEEECWSLLER 356 (533)
Q Consensus 339 ~~~l~~L~~~~~~~Lf~~ 356 (533)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677777777777666543
No 86
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00013 Score=76.69 Aligned_cols=179 Identities=15% Similarity=0.130 Sum_probs=107.8
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhh--hcc----------------CC-ce
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV--KRN----------------FE-KV 242 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~----------------F~-~~ 242 (533)
.+++|-+.-.+.+...+..+ .-...+.++|+.|+||||+|+.+.+..-- ... +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 36899888888888888432 23456789999999999999877642100 000 00 11
Q ss_pred EEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccccchhhhcccCCCCC
Q 045152 243 IWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEY----ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHE 318 (533)
Q Consensus 243 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~g 318 (533)
+.+..+.. ...+.+...+... ..+++-++|+|+++..+.+..+.|+..+......
T Consensus 89 ~eldaas~---------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAASN---------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEeccccc---------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 11111111 1122222222211 1245668999999887766777787777666666
Q ss_pred ceEEEEecch-HHHh-hhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHH
Q 045152 319 SKILITTRDR-SVAL-QLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKV 390 (533)
Q Consensus 319 s~IiiTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 390 (533)
+++|++|.+. .+.. .......+++.+++.++....+.+.+...+ ..--.+....|++.++|.+.-+..
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG----i~i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG----VSYEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCcHHHHHH
Confidence 7777776653 2221 112256899999999999888876653211 111245567788888888855443
No 87
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00012 Score=78.68 Aligned_cols=196 Identities=15% Similarity=0.179 Sum_probs=105.2
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE-eCCchhHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC-VSDTFEEIRVAKAI 260 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~l~~~i 260 (533)
.+++|-+.-+..|..++..+ .-...+.++|+.|+||||+|+.+.+.-.-...++.-.|.. +......-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 36899888888888887432 2345688999999999999987765311111110000100 00000000011111
Q ss_pred HHHhCC-----CCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEe-cchHH
Q 045152 261 IEGLGV-----SASGLSEFESLMKQIQEY----ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITT-RDRSV 330 (533)
Q Consensus 261 l~~l~~-----~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTt-R~~~v 330 (533)
...-.. ........+++...+... ..+++-++|+|+++..+....+.|...+......+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 100000 000111123333222222 23455678999997766556777888777655556555544 43444
Q ss_pred Hhh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc
Q 045152 331 ALQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL 386 (533)
Q Consensus 331 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 386 (533)
... ......+++.+++.++....+.+.+-..+. .--.+.+..|++.++|..-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi----~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI----QIDADALQLIARKAQGSMR 223 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHH
Confidence 332 233678999999999988887765531111 1124456778888988554
No 88
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.99 E-value=0.00011 Score=71.78 Aligned_cols=166 Identities=18% Similarity=0.244 Sum_probs=105.1
Q ss_pred CCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHH
Q 045152 181 EGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 260 (533)
Q Consensus 181 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 260 (533)
++.+.+|+.++..+...+...+. .-++.|.|.|-.|.|||.+.+.+++.. =...+|+++-+.++...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHHH
Confidence 46788999999999998865431 345667999999999999999999753 2246899999999999999999
Q ss_pred HHHhCCCCCCC-------ccHHHHHHHHHH--Hh--CCceEEEEEeCCCCCCccccch-hhhc-c--c--CCCCCceEEE
Q 045152 261 IEGLGVSASGL-------SEFESLMKQIQE--YI--TRKKFFLVLDDVWDGDYKKWNP-FFSC-L--K--NGHHESKILI 323 (533)
Q Consensus 261 l~~l~~~~~~~-------~~~~~l~~~l~~--~l--~~kr~LlVLDdv~~~~~~~~~~-l~~~-l--~--~~~~gs~Iii 323 (533)
+.+.+..+.+. .........+.+ .. +++.++||||+++.-. +.+. +... + . -..+.. .|+
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--D~~a~ll~~l~~L~el~~~~~i-~ii 153 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--DMDAILLQCLFRLYELLNEPTI-VII 153 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--ccchHHHHHHHHHHHHhCCCce-EEE
Confidence 99986322211 122333344443 12 2468999999995432 1221 1111 1 1 112223 344
Q ss_pred Eecc--hHH-HhhhCC--CCeeeCCCCChHhhHHHHHHh
Q 045152 324 TTRD--RSV-ALQLGS--IDIIPVKELAEEECWSLLERL 357 (533)
Q Consensus 324 TtR~--~~v-~~~~~~--~~~~~l~~L~~~~~~~Lf~~~ 357 (533)
++-. +.. ...++. ...+..+.-+.++...++.+.
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 4332 222 222344 345677888888888887653
No 89
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00015 Score=78.47 Aligned_cols=187 Identities=18% Similarity=0.238 Sum_probs=103.9
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCce---EEEE---eCCchhHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKV---IWVC---VSDTFEEIRV 256 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~---~wv~---vs~~~~~~~l 256 (533)
+++|-+.-++.+..++... .-...+.++|+.|+||||+|+.+.... ...+.... +-.| ....++..
T Consensus 19 dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~L-nC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANAL-NCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHh-cccccCCCCCchhHHHHhhcCCCcEE--
Confidence 5889988888999888533 235567899999999999998886521 11010000 0000 00000000
Q ss_pred HHHHHHHhCCCC-CCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEE-EecchHHHhh
Q 045152 257 AKAIIEGLGVSA-SGLSEFESLMKQIQEY-ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILI-TTRDRSVALQ 333 (533)
Q Consensus 257 ~~~il~~l~~~~-~~~~~~~~l~~~l~~~-l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Iii-TtR~~~v~~~ 333 (533)
.+.... ....+..++...+... ..+++-++|+|+++......+..|...+......+.+|+ |+....+...
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 000000 0011122222222211 235666899999987766677777777765544555554 4444444432
Q ss_pred -hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcch
Q 045152 334 -LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLA 387 (533)
Q Consensus 334 -~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 387 (533)
......+++.+++.++....+...+-..+- ..-.+.+..|++.++|.+.-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI----~id~eAl~~LA~lS~GslR~ 215 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENI----SYEKNALKLIAKLSSGSLRD 215 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 233568999999999998888775431111 11133467788888886643
No 90
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.98 E-value=8.5e-05 Score=83.48 Aligned_cols=154 Identities=21% Similarity=0.157 Sum_probs=84.4
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchh---hhccC-CceEEEEeCCchhHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE---VKRNF-EKVIWVCVSDTFEEIRVA 257 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F-~~~~wv~vs~~~~~~~l~ 257 (533)
.+++||+++++++++.|.... ..-+.++|++|+|||++|+.+..... +.... ...+|.- +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHHh
Confidence 368999999999999996442 33457999999999999988876311 11111 2344531 222111
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCC-----cc--ccch-hhhcccCCCCCceEEEEecch
Q 045152 258 KAIIEGLGVSASGLSEFESLMKQIQE-YITRKKFFLVLDDVWDGD-----YK--KWNP-FFSCLKNGHHESKILITTRDR 328 (533)
Q Consensus 258 ~~il~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdv~~~~-----~~--~~~~-l~~~l~~~~~gs~IiiTtR~~ 328 (533)
. +. ....+.++....+.+ .-..++.+|++|+++... .. .... |...+..+ .-++|.+|..+
T Consensus 248 a-------g~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ 317 (821)
T CHL00095 248 A-------GT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLD 317 (821)
T ss_pred c-------cC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHH
Confidence 1 11 111222222222222 223568899999996321 00 1111 22222222 24455555554
Q ss_pred HHHhh-------hCCCCeeeCCCCChHhhHHHHHH
Q 045152 329 SVALQ-------LGSIDIIPVKELAEEECWSLLER 356 (533)
Q Consensus 329 ~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~ 356 (533)
..... ......+.++..+.++...++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 43221 12245688888999998888764
No 91
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00019 Score=77.48 Aligned_cols=193 Identities=16% Similarity=0.171 Sum_probs=106.2
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 262 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 262 (533)
+++|.+.-...|..++.... -...+.++|+.|+||||+|+.+.+...- ...+... ..........+.+..
T Consensus 17 ~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c-~~~~~~~----~~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNC-LNSDKPT----PEPCGKCELCRAIAA 86 (620)
T ss_pred hccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcC-CCcCCCC----CCCCcccHHHHHHhc
Confidence 57899988999988885432 2356789999999999999988763211 1110000 000011111122211
Q ss_pred HhCC-----CCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecc-hHHHh
Q 045152 263 GLGV-----SASGLSEFESLMKQIQEY----ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRD-RSVAL 332 (533)
Q Consensus 263 ~l~~-----~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~-~~v~~ 332 (533)
.... ........+.+.+.+... ..+++-++|+|+++..+...++.|+..+......+.+|++|.+ ..+..
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 1100 000111222222222111 1245568899999877666677787777655455555555544 33332
Q ss_pred hh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhH
Q 045152 333 QL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAK 389 (533)
Q Consensus 333 ~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 389 (533)
.+ .....+++..++.++....+.+.+...+. . --.+....|++.++|.+..+.
T Consensus 167 TIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~---is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 167 TIISRCQRFDFRRIPLEAMVQHLSEIAEKESI-E---IEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 22 23567888899998888777765531111 1 113456788888888775443
No 92
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.96 E-value=9.7e-05 Score=71.52 Aligned_cols=161 Identities=14% Similarity=0.109 Sum_probs=79.9
Q ss_pred ceeechhhHHHHHHHHhC---C------CccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhH
Q 045152 183 EVCGRVEEKNELLSKLLC---E------SSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE 253 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~---~------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 253 (533)
.++|.+..++.+.+.... . .-...+....+.++|++|+||||+|+.+.+...-...-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 478888777666543211 0 0001234567889999999999999999763110010111123332221
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc--------cccchhhhcccCCCCCceEEEEe
Q 045152 254 IRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDY--------KKWNPFFSCLKNGHHESKILITT 325 (533)
Q Consensus 254 ~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~--------~~~~~l~~~l~~~~~gs~IiiTt 325 (533)
++. ....+. ........+.. .. .-+|+||+++.-.. +..+.+...+........+|+++
T Consensus 84 -~l~----~~~~g~-----~~~~~~~~~~~-a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLV----GEYIGH-----TAQKTREVIKK-AL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhh----hhhccc-----hHHHHHHHHHh-cc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111 111100 01112222222 12 24889999965221 12233433333333333455555
Q ss_pred cchHHHh------hh-CC-CCeeeCCCCChHhhHHHHHHhhc
Q 045152 326 RDRSVAL------QL-GS-IDIIPVKELAEEECWSLLERLAF 359 (533)
Q Consensus 326 R~~~v~~------~~-~~-~~~~~l~~L~~~~~~~Lf~~~a~ 359 (533)
....... .+ .. ...+++++++.++..+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4332211 11 11 34688999999999999987764
No 93
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00016 Score=78.07 Aligned_cols=176 Identities=16% Similarity=0.176 Sum_probs=106.5
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchh---------------------hhccCC
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE---------------------VKRNFE 240 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---------------------~~~~F~ 240 (533)
.+++|-+...+.|..++... .-...+.++|+.|+||||+|+.+..... ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 36899999999999988532 2345688999999999999977654211 011222
Q ss_pred ceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccccchhhhcccCCC
Q 045152 241 KVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEY----ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGH 316 (533)
Q Consensus 241 ~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~ 316 (533)
. ..+..+.... .+++...+.+. ..+++-++|+|+++..+...++.|...+....
T Consensus 92 ~-~~ld~~~~~~---------------------vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 I-HELDAASNNS---------------------VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred e-EEecccccCC---------------------HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 1 1122111111 12222222111 12355588999998776667778888887665
Q ss_pred CCceEEEEe-cchHHHhhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchh
Q 045152 317 HESKILITT-RDRSVALQL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAA 388 (533)
Q Consensus 317 ~gs~IiiTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 388 (533)
..+.+|++| ....+...+ .....+++++++.++....+.+.+-..+ . .--.+....|++.++|...-+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-i---~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-I---TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHH
Confidence 566666544 444444332 3356799999999999888887653111 1 111345677888888866433
No 94
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.94 E-value=7.5e-07 Score=77.03 Aligned_cols=85 Identities=29% Similarity=0.382 Sum_probs=72.7
Q ss_pred ccccccceEEEeecC-CcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCC
Q 045152 418 SIMPCLSVLRVYLCP-KLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITT 496 (533)
Q Consensus 418 ~ilp~L~~L~l~~c~-~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~ 496 (533)
..+|.|.+|++.|.. +-..||..+..++.|+.|.+++ ..++-+| +++++|++||.|.+++ ..|-+||..++.|+.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp--~dvg~lt~lqil~lrd-ndll~lpkeig~lt~ 174 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILP--PDVGKLTNLQILSLRD-NDLLSLPKEIGDLTR 174 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCC--hhhhhhcceeEEeecc-CchhhCcHHHHHHHH
Confidence 458889999998832 2256898888999999999985 4488899 8999999999999999 899999999999999
Q ss_pred cceeeccCCc
Q 045152 497 LKELGMEGSP 506 (533)
Q Consensus 497 L~~L~~~~c~ 506 (533)
|++|+|.|+.
T Consensus 175 lrelhiqgnr 184 (264)
T KOG0617|consen 175 LRELHIQGNR 184 (264)
T ss_pred HHHHhcccce
Confidence 9999998873
No 95
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.94 E-value=0.00024 Score=73.49 Aligned_cols=180 Identities=17% Similarity=0.170 Sum_probs=99.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccC--CceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhC
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIT 286 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 286 (533)
...+.|+|+.|+|||+|++.+++. +.... ..+++++ ..++...+...+... .... +.+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~~~----~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS------SEKFTNDFVNALRNN-----KMEE----FKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CHHH----HHHHHH
Confidence 456899999999999999999984 33322 2345554 233444455444321 1222 222332
Q ss_pred CceEEEEEeCCCCCCcccc--chhhhcccC-CCCCceEEEEecc-hHHH--------hhhCCCCeeeCCCCChHhhHHHH
Q 045152 287 RKKFFLVLDDVWDGDYKKW--NPFFSCLKN-GHHESKILITTRD-RSVA--------LQLGSIDIIPVKELAEEECWSLL 354 (533)
Q Consensus 287 ~kr~LlVLDdv~~~~~~~~--~~l~~~l~~-~~~gs~IiiTtR~-~~v~--------~~~~~~~~~~l~~L~~~~~~~Lf 354 (533)
+ .-+|+|||++......+ +.+...+.. ...|..+|+|+.. +... ..+.....+.+++.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 34899999965322111 223333321 1235568887764 2211 12222346899999999999999
Q ss_pred HHhhccCCCccccccchHHHHHHHhHhCCCcchhHH----HH---HHhhcccchHHHHHHHhh
Q 045152 355 ERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKV----IW---NLLRSKSTVKEWQRILDS 410 (533)
Q Consensus 355 ~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~----~~---~~L~~~~~~~~w~~~l~~ 410 (533)
.+.+.... ..--+++...|++.+.|....+.- +. ......-+.+..+.++..
T Consensus 278 ~~~~~~~~----~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 278 QKKAEEEG----LELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKD 336 (405)
T ss_pred HHHHHHcC----CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 98874221 111256677888888887664332 21 111122255666666653
No 96
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.0001 Score=79.27 Aligned_cols=189 Identities=14% Similarity=0.201 Sum_probs=102.2
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+++|-+.-...|...+... .-...+.++|+.|+||||+|+.+.+...-....+. .+.+.......|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 36899998889998888532 23456789999999999999888653110000000 0000000000010
Q ss_pred HH-------hCCC-CCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEe-cchHHH
Q 045152 262 EG-------LGVS-ASGLSEFESLMKQIQEY-ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITT-RDRSVA 331 (533)
Q Consensus 262 ~~-------l~~~-~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTt-R~~~v~ 331 (533)
.. +... .....+..++...+... ..+++-++|+|+++..+....+.|...+......+.+|++| ....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000 00011122222222111 13455688999998776666777877776655566666554 444444
Q ss_pred hhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc
Q 045152 332 LQL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL 386 (533)
Q Consensus 332 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 386 (533)
..+ .....+++.+++.++....+...+-..+- .--.+....|++.++|...
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi----~i~~~al~~la~~a~G~lr 215 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI----SISDAALALVARKGDGSMR 215 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHH
Confidence 322 23567889999999888777765421111 1113445677788887653
No 97
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00016 Score=75.39 Aligned_cols=177 Identities=17% Similarity=0.195 Sum_probs=101.8
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhh---------------------ccCC
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK---------------------RNFE 240 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------------~~F~ 240 (533)
.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+.+...-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 36899999999999888532 224678899999999999998876521100 0111
Q ss_pred ceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCccccchhhhcccCCCCCc
Q 045152 241 KVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQE-YITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHES 319 (533)
Q Consensus 241 ~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs 319 (533)
.+++........ .+...+...+.. ...+++-++|+|+++.......+.|...+......+
T Consensus 92 -~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111111001001 111111111111 113566788999997655445566777776655566
Q ss_pred eEEEEecc-hHHHhh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc
Q 045152 320 KILITTRD-RSVALQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL 386 (533)
Q Consensus 320 ~IiiTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 386 (533)
.+|++|.. ..+... ......+++++++.++....+...+-..+ . .--.+....|++.++|.+.
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~---~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-I---ETSREALLPIARAAQGSLR 217 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHH
Confidence 66666643 323222 22356789999999998888877653111 1 1123456778888888654
No 98
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.89 E-value=0.00011 Score=68.48 Aligned_cols=125 Identities=21% Similarity=0.256 Sum_probs=73.3
Q ss_pred cCCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHH
Q 045152 180 DEGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 259 (533)
Q Consensus 180 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 259 (533)
.-.+++|.+.+++.|.+-....- ......-+.++|..|.|||+|++.+.+...-+. .--|.|...
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~--------- 89 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE--------- 89 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH---------
Confidence 34579999999988877543222 123456778899999999999999986321111 112222221
Q ss_pred HHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCC-CCccccchhhhcccCC----CCCceEEEEecchHHH
Q 045152 260 IIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWD-GDYKKWNPFFSCLKNG----HHESKILITTRDRSVA 331 (533)
Q Consensus 260 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~-~~~~~~~~l~~~l~~~----~~gs~IiiTtR~~~v~ 331 (533)
+..++..+...++. ...||+|.+||+-= .....+..|.+.|..+ .....|..||...+..
T Consensus 90 ----------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 90 ----------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred ----------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 12233334444432 45799999999842 2234566666666533 2334455566555443
No 99
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.89 E-value=3.2e-05 Score=66.17 Aligned_cols=21 Identities=48% Similarity=0.477 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 045152 212 ISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~ 232 (533)
|.|+|++|+||||+|+.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999974
No 100
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.85 E-value=0.00017 Score=70.56 Aligned_cols=133 Identities=12% Similarity=0.069 Sum_probs=71.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceE
Q 045152 211 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKF 290 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~ 290 (533)
.+.++|++|.||||+|+.+.....-........|+.++. .++ +..+.+.. .......+.+ . ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~-----~~~~~~~~~~-a--~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT-----APKTKEILKR-A--MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcccc-----hHHHHHHHHH-c--cCc
Confidence 588999999999999977765211111111112444442 122 22222211 1112222222 2 235
Q ss_pred EEEEeCCCCC---------CccccchhhhcccCCCCCceEEEEecchHHHhhh--C------CCCeeeCCCCChHhhHHH
Q 045152 291 FLVLDDVWDG---------DYKKWNPFFSCLKNGHHESKILITTRDRSVALQL--G------SIDIIPVKELAEEECWSL 353 (533)
Q Consensus 291 LlVLDdv~~~---------~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~~~--~------~~~~~~l~~L~~~~~~~L 353 (533)
+|+||++... ..+.++.+...+.....+.+||+++......... . ....+++++++.+|..++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999632 0112334445554444566677776543222111 1 135689999999999999
Q ss_pred HHHhhc
Q 045152 354 LERLAF 359 (533)
Q Consensus 354 f~~~a~ 359 (533)
+.+.+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988763
No 101
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.00017 Score=74.93 Aligned_cols=159 Identities=15% Similarity=0.150 Sum_probs=91.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhcc-CC-ceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhC
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRN-FE-KVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIT 286 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 286 (533)
...+.|+|++|+|||+|++.+.+. +... .. .++|++ ..++..++...+... ... .+.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~------~~~f~~~~~~~~~~~-----~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYIT------SEKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHhcc-----cHH----HHHHHHH
Confidence 446999999999999999999984 3332 23 345554 344555565555321 122 2223333
Q ss_pred CceEEEEEeCCCCCCc-ccc-chhhhcccC-CCCCceEEEEec-chHHH--------hhhCCCCeeeCCCCChHhhHHHH
Q 045152 287 RKKFFLVLDDVWDGDY-KKW-NPFFSCLKN-GHHESKILITTR-DRSVA--------LQLGSIDIIPVKELAEEECWSLL 354 (533)
Q Consensus 287 ~kr~LlVLDdv~~~~~-~~~-~~l~~~l~~-~~~gs~IiiTtR-~~~v~--------~~~~~~~~~~l~~L~~~~~~~Lf 354 (533)
.+.-+|+|||+..... ..+ +.+...+.. ...|..||+||. .+.-. ..+.....+.+++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 3456899999964311 111 123222221 122456888874 33221 12233457889999999999999
Q ss_pred HHhhccCCCccccccchHHHHHHHhHhCCCcchh
Q 045152 355 ERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAA 388 (533)
Q Consensus 355 ~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 388 (533)
++.+.... .. --+++...|++.+.|.-..+
T Consensus 273 ~~~~~~~~-~~---l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEH-GE---LPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcC-CC---CCHHHHHHHHhccccCHHHH
Confidence 98874211 11 12456777888877765443
No 102
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.00016 Score=75.11 Aligned_cols=154 Identities=20% Similarity=0.202 Sum_probs=85.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
...+.|+|+.|+|||+|++.+.+. +......+++++ ...+...+...+... . ...++.... .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 457889999999999999999984 322223445554 233444555544321 1 122333333 3
Q ss_pred eEEEEEeCCCCCCcccc--chhhhcccC-CCCCceEEEEecc-hH--------HHhhhCCCCeeeCCCCChHhhHHHHHH
Q 045152 289 KFFLVLDDVWDGDYKKW--NPFFSCLKN-GHHESKILITTRD-RS--------VALQLGSIDIIPVKELAEEECWSLLER 356 (533)
Q Consensus 289 r~LlVLDdv~~~~~~~~--~~l~~~l~~-~~~gs~IiiTtR~-~~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 356 (533)
.-+|++||+.......+ +.+...+.. ...|..||+||.. +. +...+.....+.+.+++.++...++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 45888999965432222 223332221 1235578888854 21 122223346789999999999999998
Q ss_pred hhccCCCccccccchHHHHHHHhHhCCC
Q 045152 357 LAFFRRSVDDHEKLEPIGRKIAHKCKGL 384 (533)
Q Consensus 357 ~a~~~~~~~~~~~l~~~~~~I~~~c~Gl 384 (533)
.+-..+ ... -.++..-|+..+.|.
T Consensus 283 k~~~~~-~~l---~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALS-IRI---EETALDFLIEALSSN 306 (445)
T ss_pred HHHHcC-CCC---CHHHHHHHHHhcCCC
Confidence 774221 111 134445555555543
No 103
>PRK06620 hypothetical protein; Validated
Probab=97.81 E-value=0.0002 Score=66.91 Aligned_cols=135 Identities=16% Similarity=0.119 Sum_probs=78.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCce
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKK 289 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 289 (533)
..+.|+|++|+|||+|++.+.+... ..++. ..+.. . +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-------~~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-------AYIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-------CEEcc--hhhhc---------------------h-------hHH-hcC
Confidence 6789999999999999998876421 12221 10000 0 001 123
Q ss_pred EEEEEeCCCCCCccccchhhhcccC-CCCCceEEEEecch-------HHHhhhCCCCeeeCCCCChHhhHHHHHHhhccC
Q 045152 290 FFLVLDDVWDGDYKKWNPFFSCLKN-GHHESKILITTRDR-------SVALQLGSIDIIPVKELAEEECWSLLERLAFFR 361 (533)
Q Consensus 290 ~LlVLDdv~~~~~~~~~~l~~~l~~-~~~gs~IiiTtR~~-------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~ 361 (533)
-++++||++.... ..+...+.. ...|..||+|++.+ +....+.....+++++++.++-..++.+.+..
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~- 162 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI- 162 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH-
Confidence 4788999953211 122222211 13466889988743 22233344558999999999988888877641
Q ss_pred CCccccccchHHHHHHHhHhCCCcchhH
Q 045152 362 RSVDDHEKLEPIGRKIAHKCKGLPLAAK 389 (533)
Q Consensus 362 ~~~~~~~~l~~~~~~I~~~c~GlPLai~ 389 (533)
.. -.--+++..-|++.+.|.-..+.
T Consensus 163 ~~---l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 163 SS---VTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred cC---CCCCHHHHHHHHHHccCCHHHHH
Confidence 11 11125667778888877655443
No 104
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00049 Score=73.45 Aligned_cols=190 Identities=12% Similarity=0.095 Sum_probs=106.6
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 262 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 262 (533)
+++|-+.-++.+..++... .-...+.++|+.|+||||+|+.+.+...-...... ..+....+- +.|..
T Consensus 17 diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~~ 84 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSIDN 84 (563)
T ss_pred HccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHHc
Confidence 6899998899999988533 23557889999999999999988763111100000 000000000 11110
Q ss_pred HhC-----CCCCCCccHHHHHHHH---HH-HhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecc-hHHHh
Q 045152 263 GLG-----VSASGLSEFESLMKQI---QE-YITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRD-RSVAL 332 (533)
Q Consensus 263 ~l~-----~~~~~~~~~~~l~~~l---~~-~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~-~~v~~ 332 (533)
.-. .........+++.... .. -..+++-++|+|+++..+...++.|...+......+.+|++|.. ..+..
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 000 0000011122222221 11 12356668999999877666677787777765556666665543 33332
Q ss_pred hh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchh
Q 045152 333 QL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAA 388 (533)
Q Consensus 333 ~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 388 (533)
.+ .....+++.+++.++....+.+.+...+ ..--.+....|++.++|.+..+
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg----i~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ----IKYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHH
Confidence 22 2245689999999999888887653211 1112445667788888877543
No 105
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.81 E-value=0.00052 Score=72.87 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=89.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccC--CceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCC
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITR 287 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 287 (533)
..+.|+|..|.|||.|++.+.+. ....+ -.+++++ ..++..++...+... ..+ .+++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit------aeef~~el~~al~~~-----~~~----~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS------SEEFTNEFINSIRDG-----KGD----SFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHhc-----cHH----HHHHHhhc
Confidence 45899999999999999999984 33222 2345553 334444444443211 111 22233322
Q ss_pred ceEEEEEeCCCCCCcc-ccc-hhhhcccC-CCCCceEEEEecch---------HHHhhhCCCCeeeCCCCChHhhHHHHH
Q 045152 288 KKFFLVLDDVWDGDYK-KWN-PFFSCLKN-GHHESKILITTRDR---------SVALQLGSIDIIPVKELAEEECWSLLE 355 (533)
Q Consensus 288 kr~LlVLDdv~~~~~~-~~~-~l~~~l~~-~~~gs~IiiTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 355 (533)
.=+|||||+...... .|. .|...+.. ...|..|||||+.. .+...+...-.+.|+..+.+.-..++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 347899999654222 222 23333321 13356688888752 233334446678999999999999999
Q ss_pred HhhccCCCccccccchHHHHHHHhHhCCCcc
Q 045152 356 RLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL 386 (533)
Q Consensus 356 ~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 386 (533)
+++... ... --+++..-|++.+.+..-
T Consensus 457 kka~~r-~l~---l~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 457 KKAVQE-QLN---APPEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHhc-CCC---CCHHHHHHHHHhccCCHH
Confidence 887422 111 124566667766665543
No 106
>PRK08116 hypothetical protein; Validated
Probab=97.79 E-value=8.3e-05 Score=71.97 Aligned_cols=104 Identities=21% Similarity=0.217 Sum_probs=60.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCce
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKK 289 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 289 (533)
..+.++|..|+|||.||..+++. ...+...+++++ ..+++..+...+.... ..... .+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~----~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDEN----EIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc--cccHH----HHHHHhcCCC
Confidence 46889999999999999999985 322333455664 3445555555443211 11111 2233343333
Q ss_pred EEEEEeCCCCCCccccch--hhhcccC-CCCCceEEEEecch
Q 045152 290 FFLVLDDVWDGDYKKWNP--FFSCLKN-GHHESKILITTRDR 328 (533)
Q Consensus 290 ~LlVLDdv~~~~~~~~~~--l~~~l~~-~~~gs~IiiTtR~~ 328 (533)
||||||+.......|.. +...+.. -..|..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996543344543 3333322 13456799998753
No 107
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.79 E-value=8.2e-05 Score=70.70 Aligned_cols=183 Identities=16% Similarity=0.128 Sum_probs=109.8
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEE-EEeCCchhHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIW-VCVSDTFEEIRVAKAI 260 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~l~~~i 260 (533)
.+++|-+..+.-+...+.. ........+|++|.|||+-|..+.....-.+.|.+++- .|+|..-... +..
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr-- 106 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVR-- 106 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chh--
Confidence 3588988889999888864 35678899999999999999877753222344554432 3344332211 000
Q ss_pred HHHhCCCCCCCccHHHHHHHHHHHh--CCce-EEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecc-hHHHhhh-C
Q 045152 261 IEGLGVSASGLSEFESLMKQIQEYI--TRKK-FFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRD-RSVALQL-G 335 (533)
Q Consensus 261 l~~l~~~~~~~~~~~~l~~~l~~~l--~~kr-~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~-~~v~~~~-~ 335 (533)
....+...+........ ..++ -.+|||+++....+.|..+...+......++.|+.+.. ..+...+ .
T Consensus 107 --------~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 107 --------EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred --------hhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 00111111111111011 0123 47899999988888999999988776666776655543 2222222 2
Q ss_pred CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCc
Q 045152 336 SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLP 385 (533)
Q Consensus 336 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 385 (533)
...-|..++|..++...-++..+-..+ .+--.+..+.|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~----v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEG----VDIDDDALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHcCCcH
Confidence 245688999999988888877763211 1112344577888888743
No 108
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00058 Score=67.61 Aligned_cols=195 Identities=16% Similarity=0.199 Sum_probs=110.6
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcch---h---------h-hccCCceEEEEeCC
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND---E---------V-KRNFEKVIWVCVSD 249 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~---------~-~~~F~~~~wv~vs~ 249 (533)
+++|-+..++.+...+..+ .-.....++|+.|+||+++|..+.+.- . + ...++-..|+.-..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~-----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQN-----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HhCCHHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 5789999999999988533 235789999999999999996664421 0 0 11222334442100
Q ss_pred chhHHHHHHHHHHHhCC--CCCCCccHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccccchhhhcccCCCCCceEE
Q 045152 250 TFEEIRVAKAIIEGLGV--SASGLSEFESLMKQIQEYI-----TRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKIL 322 (533)
Q Consensus 250 ~~~~~~l~~~il~~l~~--~~~~~~~~~~l~~~l~~~l-----~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ii 322 (533)
..+-..+-..-+...+. ........++.. .+.+.+ .+++-++|+|+++..+......|+..+.... .+.+|
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 00000000011111110 111112223322 233333 3566789999998877667777887776554 34555
Q ss_pred EEecc-hHHHhhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 323 ITTRD-RSVALQL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 323 iTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
++|.+ ..+...+ .....+++.+++.++..+.+...... . . .......++..++|.|..+...
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~--~-~----~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE--E-I----LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc--c-c----chhHHHHHHHHcCCCHHHHHHH
Confidence 55544 3333322 33678999999999999999876421 1 0 1111357788999999766543
No 109
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.78 E-value=0.0005 Score=72.12 Aligned_cols=181 Identities=16% Similarity=0.140 Sum_probs=100.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCC--ceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE--KVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI 285 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l 285 (533)
....+.|+|+.|+|||+|++.+.+. +...+. .+++++. .++...+...+... ... .+.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~----~~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----TME----EFKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----cHH----HHHHHH
Confidence 3456899999999999999999984 333332 3445542 23334444444211 112 223333
Q ss_pred CCceEEEEEeCCCCCCccc--cchhhhcccC-CCCCceEEEEecchH---------HHhhhCCCCeeeCCCCChHhhHHH
Q 045152 286 TRKKFFLVLDDVWDGDYKK--WNPFFSCLKN-GHHESKILITTRDRS---------VALQLGSIDIIPVKELAEEECWSL 353 (533)
Q Consensus 286 ~~kr~LlVLDdv~~~~~~~--~~~l~~~l~~-~~~gs~IiiTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~L 353 (533)
+ +.-+|||||++...... -+.+...+.. ...|..||+|+.... +...+.....+++++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 34489999996532111 1223332221 123455888776431 122233345789999999999999
Q ss_pred HHHhhccCCCccccccchHHHHHHHhHhCCCcchhH----HHHH---HhhcccchHHHHHHHhh
Q 045152 354 LERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAK----VIWN---LLRSKSTVKEWQRILDS 410 (533)
Q Consensus 354 f~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~----~~~~---~L~~~~~~~~w~~~l~~ 410 (533)
+.+.+... . ..--+++...|++.+.|....+. .+.. .....-+.+..+.++..
T Consensus 289 l~~~~~~~-~---~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 289 LKKKAEEE-G---IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred HHHHHHHc-C---CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 99887421 1 11224567788888888766432 2221 11222256666666654
No 110
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00072 Score=72.40 Aligned_cols=191 Identities=17% Similarity=0.169 Sum_probs=103.6
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+++|.+...+.+..++... .-...+.++|+.|+||||+|+.+.....-...-+. .+.+.-...+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG-----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHh
Confidence 36899999999999988543 23566788999999999999888642100000000 0000001111111
Q ss_pred HHhCC-----CCCCCccHH---HHHHHHHHH-hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEe-cchHHH
Q 045152 262 EGLGV-----SASGLSEFE---SLMKQIQEY-ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITT-RDRSVA 331 (533)
Q Consensus 262 ~~l~~-----~~~~~~~~~---~l~~~l~~~-l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTt-R~~~v~ 331 (533)
..... ........+ ++...+... ..+++-++|+|+++......+..|...+........+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 10000 000001122 222222211 23566788999997766566777777766544455555544 433333
Q ss_pred hh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchh
Q 045152 332 LQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAA 388 (533)
Q Consensus 332 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 388 (533)
.. ......+.+.+++.++....+...+-..+ . .--.+....|++.++|.+..+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~eg-i---~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEG-I---EYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHH
Confidence 22 22356788999999998888877653111 1 111345567788888876543
No 111
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.00052 Score=68.32 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=66.9
Q ss_pred CceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchH-HHhh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCc
Q 045152 287 RKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRS-VALQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSV 364 (533)
Q Consensus 287 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 364 (533)
+++-++|+|+++..+......+...+.....++.+|+||.+.. +... ......+.+.+++.+++.+.+..... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~-~--- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP-E--- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc-c---
Confidence 3444567899988887788888888876666777777777653 3322 23357799999999999988876531 0
Q ss_pred cccccchHHHHHHHhHhCCCcchhHHH
Q 045152 365 DDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 365 ~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
. ..+.+..++..++|.|+.+..+
T Consensus 181 ~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 S----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 0 1233456788999999866544
No 112
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.74 E-value=2.1e-05 Score=77.84 Aligned_cols=181 Identities=22% Similarity=0.224 Sum_probs=114.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEE-EEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIW-VCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIT 286 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 286 (533)
..+-+.++|.|||||||++-.+.. +...|..-.| +....-.+...+.-.+...++..... -+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 467899999999999999988875 5667755554 44444334444444444445544322 1233445666777
Q ss_pred CceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHHHhhhCCCCeeeCCCCChH-hhHHHHHHhhccC-CCc
Q 045152 287 RKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSVALQLGSIDIIPVKELAEE-ECWSLLERLAFFR-RSV 364 (533)
Q Consensus 287 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~~a~~~-~~~ 364 (533)
+++.++|+||..+.- ..-..+...+-.+...-.|+.|+|.... ........+++|+.. ++.++|...+... ...
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 899999999994321 1111223334444555668888886533 233456777777765 6888887766422 111
Q ss_pred cccccchHHHHHHHhHhCCCcchhHHHHHHhhcc
Q 045152 365 DDHEKLEPIGRKIAHKCKGLPLAAKVIWNLLRSK 398 (533)
Q Consensus 365 ~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~ 398 (533)
.....-.....+|.++..|.|++|...++..+.-
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl 196 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL 196 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc
Confidence 2222335667899999999999999888776654
No 113
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.73 E-value=0.00031 Score=79.21 Aligned_cols=153 Identities=19% Similarity=0.139 Sum_probs=82.4
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhcc------CCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN------FEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~ 255 (533)
.+++||+.++.++++.|.... ...+.++|++|+|||++|+.+... +... ....+|.. ++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHH
Confidence 358999999999999995432 344568999999999999888763 2211 12333321 1111
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHh-C-CceEEEEEeCCCCCCc-----c---ccchhhhcccCCCCCceEEEEe
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYI-T-RKKFFLVLDDVWDGDY-----K---KWNPFFSCLKNGHHESKILITT 325 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~-~kr~LlVLDdv~~~~~-----~---~~~~l~~~l~~~~~gs~IiiTt 325 (533)
+. . +. ....+.+.....+.+.+ + +++.+|++|+++.... . .-+.+...+ ..+ .-++|-+|
T Consensus 240 l~----a---~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l-~~g-~i~~IgaT 309 (852)
T TIGR03346 240 LI----A---GA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL-ARG-ELHCIGAT 309 (852)
T ss_pred Hh----h---cc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh-hcC-ceEEEEeC
Confidence 11 0 00 00012222222222222 2 4689999999974310 0 011122222 111 23445455
Q ss_pred cchHHHhh-------hCCCCeeeCCCCChHhhHHHHHHh
Q 045152 326 RDRSVALQ-------LGSIDIIPVKELAEEECWSLLERL 357 (533)
Q Consensus 326 R~~~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~ 357 (533)
..+..... ......+.++..+.++...++...
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 44433221 122456889999999999988764
No 114
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.72 E-value=0.00033 Score=77.17 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=85.3
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhcc-----CCceEEEEeCCchhHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN-----FEKVIWVCVSDTFEEIRV 256 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~l 256 (533)
..++||+.++.++++.|.... ..-+.++|++|+|||++|+.+.... +... .++.+|.. +...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~~- 252 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIGS- 252 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHHH-
Confidence 368999999999999886532 2344689999999999999988631 1111 13444421 1111
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCC------C--ccccchhhhcccCCCCCceEEEEecc
Q 045152 257 AKAIIEGLGVSASGLSEFESLMKQIQEYI-TRKKFFLVLDDVWDG------D--YKKWNPFFSCLKNGHHESKILITTRD 327 (533)
Q Consensus 257 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVLDdv~~~------~--~~~~~~l~~~l~~~~~gs~IiiTtR~ 327 (533)
++. +. ....+.+.....+.+.+ +.++.+|+||+++.. . ..+...+..++... ..-++|-+|..
T Consensus 253 ---lla---G~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~ 324 (758)
T PRK11034 253 ---LLA---GT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_pred ---Hhc---cc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCCh
Confidence 111 00 00112222222232223 346679999999642 0 11111122222221 12345555544
Q ss_pred hHHHhh-------hCCCCeeeCCCCChHhhHHHHHHhh
Q 045152 328 RSVALQ-------LGSIDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 328 ~~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
++.... ......+.++..+.++..+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 433211 1224679999999999999998643
No 115
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.69 E-value=1.4e-05 Score=78.30 Aligned_cols=85 Identities=24% Similarity=0.345 Sum_probs=62.4
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCC----------------------ccCCCCCCCcceEE
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPI----------------------LEDHIFLPRLSSLR 477 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~----------------------~~~~~~l~~L~~L~ 477 (533)
++.|..|+++. .-+..+|..++.+..||.|+++. ..+..+|. ...+++|.+|.+|+
T Consensus 434 l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLD 511 (565)
T KOG0472|consen 434 LQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLD 511 (565)
T ss_pred hhcceeeeccc-chhhhcchhhhhhhhhheecccc-cccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceec
Confidence 44555555554 44556666666666666666663 23444442 02388899999999
Q ss_pred eccCCCCCCCCcCCCCCCCcceeeccCCch
Q 045152 478 IEYCPKLKLLPDSLLQITTLKELGMEGSPL 507 (533)
Q Consensus 478 l~~C~~l~~lP~~~~~l~~L~~L~~~~c~~ 507 (533)
|.+ ..|..+|+.++++++|++|+++|+|-
T Consensus 512 L~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 512 LQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred cCC-CchhhCChhhccccceeEEEecCCcc
Confidence 999 89999999999999999999999985
No 116
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.69 E-value=0.00016 Score=62.06 Aligned_cols=88 Identities=23% Similarity=0.135 Sum_probs=45.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc-
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK- 288 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k- 288 (533)
..+.|+|++|+||||+++.+... .......++++..+........... ...................+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 57899999999999999999874 2222223555554433222111111 111111111112222233444444433
Q ss_pred eEEEEEeCCCCCC
Q 045152 289 KFFLVLDDVWDGD 301 (533)
Q Consensus 289 r~LlVLDdv~~~~ 301 (533)
..++++|++....
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4899999997653
No 117
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.69 E-value=0.00038 Score=72.86 Aligned_cols=167 Identities=11% Similarity=0.070 Sum_probs=90.0
Q ss_pred CceeechhhHHHHHHHHhCCCc-------cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhh---ccCCceEEEEeCCch
Q 045152 182 GEVCGRVEEKNELLSKLLCESS-------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK---RNFEKVIWVCVSDTF 251 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~wv~vs~~~ 251 (533)
.++.|.+..++++.+.+...-. .+-..++-+.++|++|.|||++|+.+++..... ..+....|+++....
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 3578899999888887532110 011245678999999999999999999842111 012234455544321
Q ss_pred hHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCCc-------ccc-----chhhhcccCC--C
Q 045152 252 EEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI-TRKKFFLVLDDVWDGDY-------KKW-----NPFFSCLKNG--H 316 (533)
Q Consensus 252 ~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVLDdv~~~~~-------~~~-----~~l~~~l~~~--~ 316 (533)
++....++ .......+....++.. .+++++|+||+++..-. ... ..+...+... .
T Consensus 262 --------Ll~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 262 --------LLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred --------hcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 11111000 0001112222222222 34789999999964210 011 1232223211 2
Q ss_pred CCceEEEEecchHHHh-h-h---CCCCeeeCCCCChHhhHHHHHHhh
Q 045152 317 HESKILITTRDRSVAL-Q-L---GSIDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 317 ~gs~IiiTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
.+..||.||...+... . . .....++++..+.++..++|..+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3445566666554322 1 1 124568999999999999999875
No 118
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.69 E-value=0.0019 Score=60.20 Aligned_cols=181 Identities=17% Similarity=0.165 Sum_probs=107.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC-CchhHHHHHHHHHHHhCCCCCCCc--cHHHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS-DTFEEIRVAKAIIEGLGVSASGLS--EFESLMKQIQE 283 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~l~~~il~~l~~~~~~~~--~~~~l~~~l~~ 283 (533)
.+-+++.++|.-|.|||++.+....... -+.++-|.++ ...+...+...++..+........ ......+.+..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 3456899999999999999994443111 1112223333 345677888888888876322211 12333344444
Q ss_pred Hh-CCce-EEEEEeCCCCCCccccchhhhcccCCCCCc---eEEEEec--------chHHHhhhCCCCe-eeCCCCChHh
Q 045152 284 YI-TRKK-FFLVLDDVWDGDYKKWNPFFSCLKNGHHES---KILITTR--------DRSVALQLGSIDI-IPVKELAEEE 349 (533)
Q Consensus 284 ~l-~~kr-~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs---~IiiTtR--------~~~v~~~~~~~~~-~~l~~L~~~~ 349 (533)
.. ++++ ..+++||....+.+..+.++-.......++ +|+..-. .......-..... |.+.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 33 5677 899999998766666665544332111111 2333222 1111111122344 9999999999
Q ss_pred hHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHH
Q 045152 350 CWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIW 392 (533)
Q Consensus 350 ~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 392 (533)
...++..+..... ...+---.+....|.....|.|.+|..++
T Consensus 205 t~~yl~~~Le~a~-~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 205 TGLYLRHRLEGAG-LPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHHHHhccC-CCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 9999888765332 22222234566889999999999998765
No 119
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.68 E-value=1.3e-05 Score=89.52 Aligned_cols=83 Identities=27% Similarity=0.366 Sum_probs=75.4
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
||.|.+|++++|.++.+||++++.|-+||+|+++++. +..|| .++++|.+|.+||+..+..+..+|..+..|++|++
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP--~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLP--SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccc--hHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 7889999999999999999999999999999999654 99999 79999999999999999999999876666999999
Q ss_pred eeccCC
Q 045152 500 LGMEGS 505 (533)
Q Consensus 500 L~~~~c 505 (533)
|.+...
T Consensus 647 L~l~~s 652 (889)
T KOG4658|consen 647 LRLPRS 652 (889)
T ss_pred EEeecc
Confidence 998543
No 120
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.66 E-value=0.00074 Score=76.03 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=37.0
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.+++||+.++.++++.|.... ...+.++|++|+|||+||+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 369999999999999996432 345668999999999999888763
No 121
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.63 E-value=6.4e-05 Score=54.88 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=49.9
Q ss_pred cccceEEEeecCCcccCCc-cccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCC
Q 045152 421 PCLSVLRVYLCPKLKVLPD-YLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCP 482 (533)
Q Consensus 421 p~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~ 482 (533)
|.|++|.+++| .+..+|. .+..+++|++|+++++ .+..+|. ..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCCc
Confidence 57899999996 8888885 5678999999999954 4888885 567899999999999973
No 122
>PF14516 AAA_35: AAA-like domain
Probab=97.60 E-value=0.0018 Score=64.79 Aligned_cols=200 Identities=14% Similarity=0.174 Sum_probs=115.1
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-----hhHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-----FEEIRV 256 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~l 256 (533)
+-.|+|..--+++.+.+.. ....+.|.|+-.+|||+|...+.+..+- ..+ .++++++... .+...+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~-------~G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQ-------PGSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CcccCchHHHHHHHHHHhc-------CCCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHH
Confidence 3456888566666666643 2458999999999999999998874322 233 4457775431 234444
Q ss_pred HHHH----HHHhCCCCC-------CCccHHHHHHHHHHHh---CCceEEEEEeCCCCCCc--cccchhhhccc----CCC
Q 045152 257 AKAI----IEGLGVSAS-------GLSEFESLMKQIQEYI---TRKKFFLVLDDVWDGDY--KKWNPFFSCLK----NGH 316 (533)
Q Consensus 257 ~~~i----l~~l~~~~~-------~~~~~~~l~~~l~~~l---~~kr~LlVLDdv~~~~~--~~~~~l~~~l~----~~~ 316 (533)
++.+ .++++.... ...........+.+.+ .+++.+|+||+++..-. ...+++...+. ...
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 4444 444443321 0112223333444432 26899999999965321 11123333222 110
Q ss_pred ----CCc-eEEE-EecchHHHhh-----hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCc
Q 045152 317 ----HES-KILI-TTRDRSVALQ-----LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLP 385 (533)
Q Consensus 317 ----~gs-~Iii-TtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 385 (533)
... ++++ .+........ ++....++|++++.+|...|+...-. . -. ....++|...++|+|
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~---~-~~----~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGL---E-FS----QEQLEQLMDWTGGHP 233 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhc---c-CC----HHHHHHHHHHHCCCH
Confidence 011 1222 2211111111 12245789999999999999887642 1 11 222788999999999
Q ss_pred chhHHHHHHhhcc
Q 045152 386 LAAKVIWNLLRSK 398 (533)
Q Consensus 386 Lai~~~~~~L~~~ 398 (533)
..+..++..+..+
T Consensus 234 ~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 234 YLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999765
No 123
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.0021 Score=64.94 Aligned_cols=135 Identities=18% Similarity=0.181 Sum_probs=82.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITR 287 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 287 (533)
....+.|+|..|.|||.|++.+.+. ...+......++++ .+....+.+..+.. .-...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 5778999999999999999999984 44455433333333 33344444444322 1133444444
Q ss_pred ceEEEEEeCCCCCCc-cccc-hhhhcccC-CCCCceEEEEecc---------hHHHhhhCCCCeeeCCCCChHhhHHHHH
Q 045152 288 KKFFLVLDDVWDGDY-KKWN-PFFSCLKN-GHHESKILITTRD---------RSVALQLGSIDIIPVKELAEEECWSLLE 355 (533)
Q Consensus 288 kr~LlVLDdv~~~~~-~~~~-~l~~~l~~-~~~gs~IiiTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 355 (533)
.-=++++||++-... +.|+ .+...+.. ...|..||+|++. +.+...+...-.+.+.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 334889999965211 1222 23333321 1234489999864 2344445556789999999999999999
Q ss_pred Hhhc
Q 045152 356 RLAF 359 (533)
Q Consensus 356 ~~a~ 359 (533)
+.+.
T Consensus 255 kka~ 258 (408)
T COG0593 255 KKAE 258 (408)
T ss_pred HHHH
Confidence 8764
No 124
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.59 E-value=0.0012 Score=74.72 Aligned_cols=137 Identities=18% Similarity=0.287 Sum_probs=78.0
Q ss_pred CceeechhhHHHHHHHHhCCCc---cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESS---EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 258 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 258 (533)
..++|.+..++.+...+..... .......++.++|+.|+|||++|+.+... ....-...+.++++...+...+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH--
Confidence 4589999999999988865321 01223567889999999999999998863 2111223344444432221111
Q ss_pred HHHHHhCCCCC--CCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCC-----------CCCceEEEEe
Q 045152 259 AIIEGLGVSAS--GLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNG-----------HHESKILITT 325 (533)
Q Consensus 259 ~il~~l~~~~~--~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IiiTt 325 (533)
..-++.++. +......+...++ .....+|+||++...+...+..|...+..+ ...+-||+||
T Consensus 641 --~~l~g~~~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 641 --ARLIGAPPGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred --HHhcCCCCCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 111222211 1111122222222 223458999999887777777777766443 1334477787
Q ss_pred cc
Q 045152 326 RD 327 (533)
Q Consensus 326 R~ 327 (533)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 65
No 125
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.59 E-value=0.0008 Score=75.56 Aligned_cols=206 Identities=19% Similarity=0.250 Sum_probs=110.5
Q ss_pred CceeechhhHHHHHHHHhCCC---ccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCES---SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 258 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 258 (533)
..++|-+.-++.+.+.+.... ........++.++|+.|+|||.||+.+... .-......+-++++.-.+. .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----h
Confidence 468999999999988875431 112345568999999999999999887652 2111122222222221111 1
Q ss_pred HHHHHhCCCCCCC---ccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCC-----------CCceEEEE
Q 045152 259 AIIEGLGVSASGL---SEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGH-----------HESKILIT 324 (533)
Q Consensus 259 ~il~~l~~~~~~~---~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IiiT 324 (533)
.+ ..+.+.+++. .....+...++ +...-+|+||++...+...++.|...+..+. ..+-||+|
T Consensus 640 ~~-~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 640 TV-SRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hh-ccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 11 1222221111 11122333333 2455799999998777666777766665442 45667778
Q ss_pred ecchH--HHh------------------------hh-----CCCCeeeCCCCChHhhHHHHHHhhccC-----CC-cccc
Q 045152 325 TRDRS--VAL------------------------QL-----GSIDIIPVKELAEEECWSLLERLAFFR-----RS-VDDH 367 (533)
Q Consensus 325 tR~~~--v~~------------------------~~-----~~~~~~~l~~L~~~~~~~Lf~~~a~~~-----~~-~~~~ 367 (533)
|.... +.. .+ +...++.+.+|+.++...++....-.- .. ...-
T Consensus 716 SNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l 795 (852)
T TIGR03345 716 SNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAEL 795 (852)
T ss_pred CCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceE
Confidence 65310 000 01 112466778888888888776543210 00 0011
Q ss_pred ccchHHHHHHHhHhCCCcchhHHHHHHhhc
Q 045152 368 EKLEPIGRKIAHKCKGLPLAAKVIWNLLRS 397 (533)
Q Consensus 368 ~~l~~~~~~I~~~c~GlPLai~~~~~~L~~ 397 (533)
.--.+....|++.+.+-...+..+-+.+..
T Consensus 796 ~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~ 825 (852)
T TIGR03345 796 VYSEALVEHIVARCTEVESGARNIDAILNQ 825 (852)
T ss_pred EECHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 112344556777777666666666665554
No 126
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.58 E-value=4.3e-05 Score=76.95 Aligned_cols=77 Identities=30% Similarity=0.564 Sum_probs=58.7
Q ss_pred ccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEe--ccCCCCCCCCcCCCCC-----
Q 045152 422 CLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRI--EYCPKLKLLPDSLLQI----- 494 (533)
Q Consensus 422 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l--~~C~~l~~lP~~~~~l----- 494 (533)
+|+.|.+++|.++..+|+.+. .+|++|++++|+++..+| +. |+.|.+ ..|..+..||+++..|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP--~s------Le~L~L~~n~~~~L~~LPssLk~L~I~~~ 142 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP--ES------VRSLEIKGSATDSIKNVPNGLTSLSINSY 142 (426)
T ss_pred CCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc--cc------cceEEeCCCCCcccccCcchHhheecccc
Confidence 689999999999988887664 689999999998888888 33 444444 3456678888777655
Q ss_pred -------------CCcceeeccCCchh
Q 045152 495 -------------TTLKELGMEGSPLL 508 (533)
Q Consensus 495 -------------~~L~~L~~~~c~~l 508 (533)
++|++|++++|..+
T Consensus 143 n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 143 NPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred ccccccccccccCCcccEEEecCCCcc
Confidence 37899999998854
No 127
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.57 E-value=6.6e-05 Score=86.83 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=72.0
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|++|++++|.....+|..+..+++|++|++++|.-...+| ..++.+++|++|+|++|.-...+|..+.++++|++
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP--RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC--hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence 6788899998877667788888889999999998887555678 68888999999999997666688988999999999
Q ss_pred eeccCCch
Q 045152 500 LGMEGSPL 507 (533)
Q Consensus 500 L~~~~c~~ 507 (533)
|++++|..
T Consensus 241 L~L~~n~l 248 (968)
T PLN00113 241 LDLVYNNL 248 (968)
T ss_pred EECcCcee
Confidence 99988853
No 128
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.57 E-value=0.0015 Score=72.68 Aligned_cols=167 Identities=17% Similarity=0.256 Sum_probs=90.5
Q ss_pred CCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHH
Q 045152 181 EGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 260 (533)
Q Consensus 181 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 260 (533)
+.+.+|.++-+++|.++|............++.++|++|+||||+|+.+... ....| +-+..+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccch
Confidence 3468999999999999886322111234568999999999999999999862 22222 123333332322211111
Q ss_pred HHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccc----cchhhhcccC---------------CCCCceE
Q 045152 261 IEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKK----WNPFFSCLKN---------------GHHESKI 321 (533)
Q Consensus 261 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~----~~~l~~~l~~---------------~~~gs~I 321 (533)
....+. . ...+...+... ....-+++||+++...... .+.+...+.. .....-+
T Consensus 396 ~~~~g~-----~-~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RTYIGS-----M-PGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hccCCC-----C-CcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 001110 0 11223333322 2234578999997643221 1233333321 1123444
Q ss_pred EEEecchHHHhhh-CCCCeeeCCCCChHhhHHHHHHhhc
Q 045152 322 LITTRDRSVALQL-GSIDIIPVKELAEEECWSLLERLAF 359 (533)
Q Consensus 322 iiTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~ 359 (533)
|.|+....+...+ .....+++.+++.++-.++.+++..
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 5555443332221 2356789999999999888877653
No 129
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.57 E-value=7e-05 Score=86.67 Aligned_cols=86 Identities=21% Similarity=0.167 Sum_probs=76.6
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|++|.++.|.....+|..+..+++|++|+++++.-...+| ..++.+++|++|++++|.-...+|..+.++++|++
T Consensus 187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 264 (968)
T PLN00113 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP--YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264 (968)
T ss_pred CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC--hhHhcCCCCCEEECcCceeccccChhHhCCCCCCE
Confidence 6789999999988777899999999999999999887555788 68999999999999998766789999999999999
Q ss_pred eeccCCch
Q 045152 500 LGMEGSPL 507 (533)
Q Consensus 500 L~~~~c~~ 507 (533)
|++++|..
T Consensus 265 L~L~~n~l 272 (968)
T PLN00113 265 LFLYQNKL 272 (968)
T ss_pred EECcCCee
Confidence 99998863
No 130
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.57 E-value=0.00057 Score=76.89 Aligned_cols=138 Identities=17% Similarity=0.264 Sum_probs=75.2
Q ss_pred CceeechhhHHHHHHHHhCCCc---cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESS---EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 258 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 258 (533)
..++|.+.-++.+...+..... ..+....++.++|+.|+|||+||+.+.+. ....-...+.++++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h----
Confidence 4688999998888888754321 01223468889999999999999998853 211122334444432211 1
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHhC-CceEEEEEeCCCCCCccccchhhhcccCC-----------CCCceEEEEec
Q 045152 259 AIIEGLGVSASGLSEFESLMKQIQEYIT-RKKFFLVLDDVWDGDYKKWNPFFSCLKNG-----------HHESKILITTR 326 (533)
Q Consensus 259 ~il~~l~~~~~~~~~~~~l~~~l~~~l~-~kr~LlVLDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IiiTtR 326 (533)
.....+.+.++.....+. ...+.+.++ ...-+|+|||+...+...+..+...+..+ ...+.||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 112222222211111110 111222222 23369999999877666777776666433 12233777876
Q ss_pred c
Q 045152 327 D 327 (533)
Q Consensus 327 ~ 327 (533)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 131
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.55 E-value=0.00041 Score=74.55 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=39.5
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.+++|-++.++++..++..... ......++.|+|++|+||||+++.+...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999865432 1233467999999999999999999864
No 132
>PRK12377 putative replication protein; Provisional
Probab=97.55 E-value=0.00017 Score=68.56 Aligned_cols=102 Identities=21% Similarity=0.118 Sum_probs=57.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
...+.++|.+|+|||+||..+.+. .......++++++. +++..+-...... ..... +.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~~----~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDNG----QSGEK----FLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhcc----chHHH----HHHHh-cC
Confidence 357899999999999999999984 33334445666543 4444444333211 11111 22222 35
Q ss_pred eEEEEEeCCCCCCccccch--hhhcccCC-CCCceEEEEecc
Q 045152 289 KFFLVLDDVWDGDYKKWNP--FFSCLKNG-HHESKILITTRD 327 (533)
Q Consensus 289 r~LlVLDdv~~~~~~~~~~--l~~~l~~~-~~gs~IiiTtR~ 327 (533)
.-||||||+.......|.. +...+... .+.-.+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5699999996544344543 33333321 223447888764
No 133
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.54 E-value=0.0014 Score=67.11 Aligned_cols=181 Identities=12% Similarity=0.089 Sum_probs=96.3
Q ss_pred CceeechhhHHHHHHHHhCCCc-------cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESS-------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (533)
.++.|.+..+++|.+.+...-. -+-..++.+.++|++|.|||+||+.+.+. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 3588999888888876531110 01134677899999999999999999874 22222 22211 1
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC------cc----c----cchhhhcccC--CCCC
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGD------YK----K----WNPFFSCLKN--GHHE 318 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~------~~----~----~~~l~~~l~~--~~~g 318 (533)
.+ .....+. ....+...+.......+.+|+||+++..- .. . +..+...+.. ...+
T Consensus 214 ~l----~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EF----VQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HH----HHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 11 1111110 11122222333334578899999985421 00 0 1112222211 2235
Q ss_pred ceEEEEecchHHHhh--h---CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcch
Q 045152 319 SKILITTRDRSVALQ--L---GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLA 387 (533)
Q Consensus 319 s~IiiTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 387 (533)
..||+||...+.... . .....+.++..+.++..++|..... ........++ .++++.+.|.--|
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~-~~~l~~dvd~----~~la~~t~g~sga 353 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS-KMNLSEEVDL----EDFVSRPEKISAA 353 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh-cCCCCcccCH----HHHHHHcCCCCHH
Confidence 678888876543321 1 1255688999999988888886543 1111122223 4566677666543
No 134
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.0025 Score=62.98 Aligned_cols=93 Identities=11% Similarity=0.095 Sum_probs=67.2
Q ss_pred CceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecch-HHH-hhhCCCCeeeCCCCChHhhHHHHHHhhccCCCc
Q 045152 287 RKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDR-SVA-LQLGSIDIIPVKELAEEECWSLLERLAFFRRSV 364 (533)
Q Consensus 287 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 364 (533)
+++=++|+|+++..+......+...+.....++.+|++|.+. .+. +.......+.+.+++.+++.+.+.....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~----- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI----- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC-----
Confidence 445688999998888778888888887776777777776654 333 3334467899999999999888865311
Q ss_pred cccccchHHHHHHHhHhCCCcchhHHH
Q 045152 365 DDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 365 ~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
. ....++..++|.|+.+..+
T Consensus 182 ~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-------hHHHHHHHcCCCHHHHHHH
Confidence 1 1346788999999977644
No 135
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.54 E-value=0.0011 Score=68.11 Aligned_cols=117 Identities=21% Similarity=0.300 Sum_probs=73.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceE
Q 045152 211 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKF 290 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~ 290 (533)
++.|.|+-++||||+++.+... .... .++++..+......-+.+ ....+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d-----------------~~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLD-----------------LLRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHH-----------------HHHHHHHhhccCCc
Confidence 9999999999999999666542 1111 555553332111110111 11111111122778
Q ss_pred EEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHHHh-----h-hCCCCeeeCCCCChHhhHH
Q 045152 291 FLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSVAL-----Q-LGSIDIIPVKELAEEECWS 352 (533)
Q Consensus 291 LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~-----~-~~~~~~~~l~~L~~~~~~~ 352 (533)
.++||.|... ..|......+.+.++. +|++|+.+..... . .|....+.+-||+..|...
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 9999999655 6788888877766555 7888887654432 2 2336788999999999875
No 136
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.53 E-value=0.0044 Score=69.42 Aligned_cols=165 Identities=15% Similarity=0.211 Sum_probs=85.3
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+++|.++-++++.+++............++.++|++|+|||++|+.+.+. ....| +-++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHHHHcCC--
Confidence 458899999999988764221111223458999999999999999999873 32233 12223332222221110
Q ss_pred HHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccc----cchhhhccc--------CC-------CCCceEE
Q 045152 262 EGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKK----WNPFFSCLK--------NG-------HHESKIL 322 (533)
Q Consensus 262 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~----~~~l~~~l~--------~~-------~~gs~Ii 322 (533)
. ..........+...+.... .++-+++||+++...... ...+...+. +. ..+..+|
T Consensus 393 ---~-~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ---R-RTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ---C-CceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 0 0000011122333333332 333478999996643211 111222221 00 1233345
Q ss_pred EEecchH-HHh-hhCCCCeeeCCCCChHhhHHHHHHhh
Q 045152 323 ITTRDRS-VAL-QLGSIDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 323 iTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
.||.... +.. .......+.+.+++.++-.+++.+..
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5555432 111 12334678999999999888887643
No 137
>PRK08118 topology modulation protein; Reviewed
Probab=97.53 E-value=5.1e-05 Score=68.00 Aligned_cols=34 Identities=32% Similarity=0.614 Sum_probs=27.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhh-ccCCceEE
Q 045152 211 VISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIW 244 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 244 (533)
.|.|+|++|+||||||+.+++...+. -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999864443 45677775
No 138
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.53 E-value=0.00085 Score=74.58 Aligned_cols=164 Identities=16% Similarity=0.251 Sum_probs=92.3
Q ss_pred CceeechhhHHHHHHHHhCCCc---cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESS---EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 258 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 258 (533)
..++|-+..++.+...+..... .......++.++|+.|+|||+||+.+... . +...+.++.+.-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 3578888888888887753211 01234567899999999999999999863 2 23345555544222111
Q ss_pred HHHHHhCCCCC--CCccHHHHHHHHHHHhC-CceEEEEEeCCCCCCccccchhhhcccCC-----------CCCceEEEE
Q 045152 259 AIIEGLGVSAS--GLSEFESLMKQIQEYIT-RKKFFLVLDDVWDGDYKKWNPFFSCLKNG-----------HHESKILIT 324 (533)
Q Consensus 259 ~il~~l~~~~~--~~~~~~~l~~~l~~~l~-~kr~LlVLDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IiiT 324 (533)
+..-++.... +...... +.+.++ ...-+++||+++..+.+.++.|...+..+ ...+.||+|
T Consensus 526 -~~~lig~~~gyvg~~~~~~----l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGL----LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred -HHHHhcCCCCCcccchhhH----HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 1111222211 1111122 233333 33469999999887766677776665433 123446777
Q ss_pred ecch--HHH--------------------hhhC-----C-CCeeeCCCCChHhhHHHHHHhh
Q 045152 325 TRDR--SVA--------------------LQLG-----S-IDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 325 tR~~--~v~--------------------~~~~-----~-~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
|..- .+. ..+. . ..++.+++|+.++..+++....
T Consensus 601 sn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L 662 (731)
T TIGR02639 601 SNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFV 662 (731)
T ss_pred CCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHH
Confidence 6431 010 0111 1 3567788888888877776543
No 139
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0028 Score=67.24 Aligned_cols=164 Identities=18% Similarity=0.287 Sum_probs=90.8
Q ss_pred CCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHH
Q 045152 181 EGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 260 (533)
Q Consensus 181 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 260 (533)
+.+-+|.++-+++|++.|.-..-...-...++++||++|+|||+|++.+.+ .....| +-+++..--|..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEI---- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEI---- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHh----
Confidence 345689999999999998543321234568999999999999999999986 344444 22233333232211
Q ss_pred HHHhCCC-CC--CCccHHHHHHHHHHHhCCceEEEEEeCCCCCCcccc----chhhhccc-CCC------------CCce
Q 045152 261 IEGLGVS-AS--GLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKW----NPFFSCLK-NGH------------HESK 320 (533)
Q Consensus 261 l~~l~~~-~~--~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~----~~l~~~l~-~~~------------~gs~ 320 (533)
.+. .. +.+. ..+...++ ..+.+.-+++||.++....+-- ..++..|. ..+ -=|.
T Consensus 393 ----RGHRRTYIGamP-GrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 393 ----RGHRRTYIGAMP-GKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ----ccccccccccCC-hHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 111 00 1111 11222222 2245678999999965432111 11222221 100 0133
Q ss_pred E-EEEecc-hH-H-HhhhCCCCeeeCCCCChHhhHHHHHHhhc
Q 045152 321 I-LITTRD-RS-V-ALQLGSIDIIPVKELAEEECWSLLERLAF 359 (533)
Q Consensus 321 I-iiTtR~-~~-v-~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~ 359 (533)
| .|||-+ -+ + +..+....++++.+-+++|-.++-+++..
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 3 344433 22 2 22334568899999999998888777654
No 140
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.51 E-value=0.0012 Score=58.70 Aligned_cols=138 Identities=18% Similarity=0.158 Sum_probs=74.6
Q ss_pred chhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhh------------------ccCCceEEEEeC
Q 045152 187 RVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK------------------RNFEKVIWVCVS 248 (533)
Q Consensus 187 R~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------------------~~F~~~~wv~vs 248 (533)
-+...+.+...+... .-...+.++|+.|+||+|+|..+.+.---. ..+.-..|+.-.
T Consensus 2 q~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~ 76 (162)
T PF13177_consen 2 QEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD 76 (162)
T ss_dssp -HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT
T ss_pred cHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc
Confidence 345556666666332 235578999999999999997775421000 122333444322
Q ss_pred Cc---hhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEe
Q 045152 249 DT---FEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITT 325 (533)
Q Consensus 249 ~~---~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTt 325 (533)
.. ..++++- ++...+.... ..++.=++||||++..+.+....|+..+.....++.+|++|
T Consensus 77 ~~~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t 139 (162)
T PF13177_consen 77 KKKKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILIT 139 (162)
T ss_dssp TSSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEE
T ss_pred cccchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 21 2222222 2333222111 12356689999999888888888988888877889998888
Q ss_pred cchH-HHh-hhCCCCeeeCCCCC
Q 045152 326 RDRS-VAL-QLGSIDIIPVKELA 346 (533)
Q Consensus 326 R~~~-v~~-~~~~~~~~~l~~L~ 346 (533)
.+.. +.. .......+.+++++
T Consensus 140 ~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 140 NNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp S-GGGS-HHHHTTSEEEEE----
T ss_pred CChHHChHHHHhhceEEecCCCC
Confidence 8754 222 22334556665553
No 141
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.002 Score=64.48 Aligned_cols=148 Identities=11% Similarity=0.108 Sum_probs=87.7
Q ss_pred ceee-chhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhc--------------------cCCc
Q 045152 183 EVCG-RVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR--------------------NFEK 241 (533)
Q Consensus 183 ~~vG-R~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~ 241 (533)
.++| -+.-++.+...+..+ .-.....++|+.|+||||+|+.+.+..--.. |.|.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 3556 445566666666422 2356779999999999999987754210000 1111
Q ss_pred eEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccccchhhhcccCCCC
Q 045152 242 VIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEY----ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHH 317 (533)
Q Consensus 242 ~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~ 317 (533)
.++... ......+++.+.+... ..+++-++|+|+++..+......|...+.....
T Consensus 81 -~~i~~~--------------------~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~ 139 (329)
T PRK08058 81 -HLVAPD--------------------GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSG 139 (329)
T ss_pred -EEeccc--------------------cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCC
Confidence 111100 0111222332222211 234556799999987776667778888877667
Q ss_pred CceEEEEecchH-HHhhh-CCCCeeeCCCCChHhhHHHHHH
Q 045152 318 ESKILITTRDRS-VALQL-GSIDIIPVKELAEEECWSLLER 356 (533)
Q Consensus 318 gs~IiiTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~ 356 (533)
++.+|++|.+.. +...+ .....+++.+++.++..+.+..
T Consensus 140 ~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 140 GTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 777777776533 32222 3367899999999999887765
No 142
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.46 E-value=0.0003 Score=72.41 Aligned_cols=157 Identities=14% Similarity=0.094 Sum_probs=86.4
Q ss_pred CceeechhhHHHHHHHHhCCCcc-------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSE-------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (533)
.++.|.+..++++.+.+.-.-.. +-.....+.++|++|.|||++|+.+.+. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 35789999988888876321100 1124456889999999999999999973 33333 222111
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc------cc--------cchhhhcccC--CCCC
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDY------KK--------WNPFFSCLKN--GHHE 318 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~------~~--------~~~l~~~l~~--~~~g 318 (533)
++. ....+. ....+...+.......+.+|+||+++.... .. ...+...+.. ...+
T Consensus 252 eL~----~k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 252 ELI----QKYLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred hhh----hhhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 111 111110 011122222222345678999999843210 00 0111111211 1335
Q ss_pred ceEEEEecchHHHhh-h----CCCCeeeCCCCChHhhHHHHHHhh
Q 045152 319 SKILITTRDRSVALQ-L----GSIDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 319 s~IiiTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
..||.||...+.... + .....+.++..+.++..++|..+.
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 678888876544332 1 125678999999999999998765
No 143
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0031 Score=62.31 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=66.2
Q ss_pred CceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecch-HHHhh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCc
Q 045152 287 RKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDR-SVALQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSV 364 (533)
Q Consensus 287 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 364 (533)
+++-++|||+++..+...-..|...+.....++.+|++|.+. .+..- ......+.+.+++.+++.+.+.....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~~----- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQGV----- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcCC-----
Confidence 456789999998877666677777777666677777777653 33322 23367789999999999888865311
Q ss_pred cccccchHHHHHHHhHhCCCcchhHHH
Q 045152 365 DDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 365 ~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
. ...+..++..++|.|+.+..+
T Consensus 187 -~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 187 -S----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 222567789999999876543
No 144
>CHL00176 ftsH cell division protein; Validated
Probab=97.44 E-value=0.0011 Score=71.69 Aligned_cols=179 Identities=16% Similarity=0.138 Sum_probs=94.7
Q ss_pred CceeechhhHHHHHHH---HhCCCc---cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSK---LLCESS---EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~---L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
.++.|.++.++++.+. +..... -+....+-+.++|++|.|||+||+.+.... . .-|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----H
Confidence 3578887766655544 322210 011234568999999999999999998632 1 123333221 1
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC----------ccccc----hhhhccc--CCCCCc
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGD----------YKKWN----PFFSCLK--NGHHES 319 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~----------~~~~~----~l~~~l~--~~~~gs 319 (533)
+.. ...+ .....+...+.......+++|+|||++... ...+. .+...+. ....+.
T Consensus 252 f~~----~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVE----MFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHH----Hhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 110 0000 011223334444556678999999995421 01111 1222221 123455
Q ss_pred eEEEEecchHHHhh-h----CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCc
Q 045152 320 KILITTRDRSVALQ-L----GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLP 385 (533)
Q Consensus 320 ~IiiTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 385 (533)
.||.||...+.... + .....+.+...+.++-.++++.++.. ..... ......+++.+.|..
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~-~~~~~----d~~l~~lA~~t~G~s 388 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN-KKLSP----DVSLELIARRTPGFS 388 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh-cccch----hHHHHHHHhcCCCCC
Confidence 67777766543221 1 12467888888999999999887642 11111 122356677777733
No 145
>PRK08181 transposase; Validated
Probab=97.43 E-value=0.00035 Score=67.34 Aligned_cols=101 Identities=21% Similarity=0.185 Sum_probs=55.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCce
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKK 289 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 289 (533)
..+.++|++|+|||.||..+.+. .......++|++ ..++...+..... .......... + .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~l~~----l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTR------TTDLVQKLQVARR-----ELQLESAIAK----L-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeee------HHHHHHHHHHHHh-----CCcHHHHHHH----H-hcC
Confidence 35899999999999999999873 222333455554 3445555433321 1122222222 2 134
Q ss_pred EEEEEeCCCCCCccccc--hhhhcccCCCCCceEEEEecch
Q 045152 290 FFLVLDDVWDGDYKKWN--PFFSCLKNGHHESKILITTRDR 328 (533)
Q Consensus 290 ~LlVLDdv~~~~~~~~~--~l~~~l~~~~~gs~IiiTtR~~ 328 (533)
-||||||+.......|. .+...+...-.+..+||||..+
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 59999999654433332 2444443211123588888764
No 146
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.41 E-value=0.00011 Score=49.56 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=17.0
Q ss_pred CcceEEeccCCCCCCCCcCCCCCCCcceeeccCCc
Q 045152 472 RLSSLRIEYCPKLKLLPDSLLQITTLKELGMEGSP 506 (533)
Q Consensus 472 ~L~~L~l~~C~~l~~lP~~~~~l~~L~~L~~~~c~ 506 (533)
+|++|++++ .+++.+|+.+.+|++|++|++++|+
T Consensus 2 ~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSN-NQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccC-CCCcccCchHhCCCCCCEEEecCCC
Confidence 455555555 3555555445555555555555554
No 147
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.38 E-value=0.0015 Score=69.46 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=92.6
Q ss_pred CceeechhhHHHHHHHHh---CCCc---cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLL---CESS---EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
.+++|-++.++++.+.+. .... .+....+-+.++|++|.|||+||+.+.+.. ... ++.++.. +
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~~----~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISGS----D 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccHH----H
Confidence 367888877666655442 1100 011234568899999999999999998642 111 2333211 1
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc----------cccch----hhhccc--CCCCCc
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDY----------KKWNP----FFSCLK--NGHHES 319 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~----------~~~~~----l~~~l~--~~~~gs 319 (533)
+.. ...+ .....+...+.......+.+|+|||++.... ..+.. +...+. ....+.
T Consensus 124 ~~~----~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FVE----MFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HHH----HHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 111 1100 0112233334444445678999999954210 01111 111111 122344
Q ss_pred eEEEEecchHHHh-hh----CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCc
Q 045152 320 KILITTRDRSVAL-QL----GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLP 385 (533)
Q Consensus 320 ~IiiTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 385 (533)
.||.||..+.... .+ .....+.++..+.++-.++|....... ......+ ...+++.+.|.-
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~-~~~~~~~----l~~la~~t~G~s 260 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK-KLAPDVD----LKAVARRTPGFS 260 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC-CCCcchh----HHHHHHhCCCCC
Confidence 5666776543221 11 225678899999988889888765311 1111112 246777777744
No 148
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.36 E-value=0.00039 Score=65.34 Aligned_cols=37 Identities=22% Similarity=0.420 Sum_probs=29.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEe
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 247 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 247 (533)
.-.++|+|..|.|||||+..+..+ ....|..+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 346789999999999999888864 6678877776653
No 149
>PRK10536 hypothetical protein; Provisional
Probab=97.34 E-value=0.0021 Score=60.75 Aligned_cols=136 Identities=13% Similarity=0.187 Sum_probs=73.1
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE--e--CC-----chh
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC--V--SD-----TFE 252 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~--v--s~-----~~~ 252 (533)
..+.++......+..++.. ...+.++|++|.|||+||..+..+.-....|+..+... + .+ +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 3467788888888888842 24899999999999999988776422233444333321 1 10 001
Q ss_pred HH----HHHHHHHHHhCCCCCCCccHHHHHH--------HHHHHhCCceE---EEEEeCCCCCCccccchhhhcccCCCC
Q 045152 253 EI----RVAKAIIEGLGVSASGLSEFESLMK--------QIQEYITRKKF---FLVLDDVWDGDYKKWNPFFSCLKNGHH 317 (533)
Q Consensus 253 ~~----~l~~~il~~l~~~~~~~~~~~~l~~--------~l~~~l~~kr~---LlVLDdv~~~~~~~~~~l~~~l~~~~~ 317 (533)
.. -.+.-+...+..-- .....+.... .=..++++..+ ++|+|++.+.+.. .+...+...+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~---~~k~~ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAA---QMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHH---HHHHHHhhcCC
Confidence 11 11222222221100 0001111100 01135566654 9999999665543 33444445567
Q ss_pred CceEEEEecchH
Q 045152 318 ESKILITTRDRS 329 (533)
Q Consensus 318 gs~IiiTtR~~~ 329 (533)
+|++|+|--..+
T Consensus 203 ~sk~v~~GD~~Q 214 (262)
T PRK10536 203 NVTVIVNGDITQ 214 (262)
T ss_pred CCEEEEeCChhh
Confidence 899998876543
No 150
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.33 E-value=4.1e-05 Score=66.47 Aligned_cols=81 Identities=26% Similarity=0.408 Sum_probs=59.0
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
+.....|.+++ .++...|..+-.+.+|+.|++++-. +++|| .++..|+.|+.|++. ..+|..+|.+++.++.|+.
T Consensus 32 ~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nnq-ie~lp--~~issl~klr~lnvg-mnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 32 MSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNNQ-IEELP--TSISSLPKLRILNVG-MNRLNILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccch-hhhcC--hhhhhchhhhheecc-hhhhhcCccccCCCchhhh
Confidence 33455566666 5667777777778888888887544 77888 677778888888875 3677788888888888888
Q ss_pred eeccCC
Q 045152 500 LGMEGS 505 (533)
Q Consensus 500 L~~~~c 505 (533)
||+..+
T Consensus 107 ldltyn 112 (264)
T KOG0617|consen 107 LDLTYN 112 (264)
T ss_pred hhcccc
Confidence 887544
No 151
>PRK06526 transposase; Provisional
Probab=97.32 E-value=0.00032 Score=67.24 Aligned_cols=101 Identities=16% Similarity=0.206 Sum_probs=53.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
...+.|+|++|+|||+||..+.... ....+. +.|+ +..++...+...... .. ....+... .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a-~~~g~~-v~f~------t~~~l~~~l~~~~~~-----~~---~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA-CQAGHR-VLFA------TAAQWVARLAAAHHA-----GR---LQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH-HHCCCc-hhhh------hHHHHHHHHHHHHhc-----Cc---HHHHHHHh--cc
Confidence 3468999999999999999987642 222332 3333 334444444332111 11 11222222 23
Q ss_pred eEEEEEeCCCCCCccccc--hhhhcccC-CCCCceEEEEecch
Q 045152 289 KFFLVLDDVWDGDYKKWN--PFFSCLKN-GHHESKILITTRDR 328 (533)
Q Consensus 289 r~LlVLDdv~~~~~~~~~--~l~~~l~~-~~~gs~IiiTtR~~ 328 (533)
.-+|||||+.......+. .+...+.. ...++ +|+||..+
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 458999999654322222 23333321 12344 88888764
No 152
>PRK09183 transposase/IS protein; Provisional
Probab=97.31 E-value=0.00067 Score=65.36 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=53.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
...+.|+|++|+|||+||..+.... ....+ .+.+++ ..++...+...... .. +...+...+ .+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a-~~~G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~ 164 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA-VRAGI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MA 164 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH-HHcCC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cC
Confidence 3467899999999999999997532 22222 233443 23333333222111 01 112222222 34
Q ss_pred eEEEEEeCCCCCCccccc--hhhhcccC-CCCCceEEEEecch
Q 045152 289 KFFLVLDDVWDGDYKKWN--PFFSCLKN-GHHESKILITTRDR 328 (533)
Q Consensus 289 r~LlVLDdv~~~~~~~~~--~l~~~l~~-~~~gs~IiiTtR~~ 328 (533)
.-++||||+.......+. .+...+.. ...++ +||||...
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 569999999754333332 24333321 12344 88888753
No 153
>PLN03150 hypothetical protein; Provisional
Probab=97.28 E-value=0.00028 Score=76.95 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=40.6
Q ss_pred eEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcceeeccC
Q 045152 425 VLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKELGMEG 504 (533)
Q Consensus 425 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~L~~~~ 504 (533)
.|.++.+.--..+|..+..+++|+.|+|+++.--..+| ..++.|++|+.|+|++|.--..+|+.+.+|++|++|++++
T Consensus 422 ~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP--~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP--PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC--hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 34444433223455555555666666665543222455 4555556666666655433334555555566666666555
Q ss_pred C
Q 045152 505 S 505 (533)
Q Consensus 505 c 505 (533)
|
T Consensus 500 N 500 (623)
T PLN03150 500 N 500 (623)
T ss_pred C
Confidence 4
No 154
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.28 E-value=0.00033 Score=63.40 Aligned_cols=101 Identities=22% Similarity=0.399 Sum_probs=51.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
..-+.++|..|+|||.||..+.+. .+...+ .+.|++ ..+++..+-..- . .......... +. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~-~~~~g~-~v~f~~------~~~L~~~l~~~~----~-~~~~~~~~~~----l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE-AIRKGY-SVLFIT------ASDLLDELKQSR----S-DGSYEELLKR----LK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH-HHHTT---EEEEE------HHHHHHHHHCCH----C-CTTHCHHHHH----HH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH-hccCCc-ceeEee------cCceeccccccc----c-ccchhhhcCc----cc-c
Confidence 456999999999999999998874 233333 355664 344444443221 1 1122222222 22 3
Q ss_pred eEEEEEeCCCCCCccccch--hhhcccCC-CCCceEEEEecch
Q 045152 289 KFFLVLDDVWDGDYKKWNP--FFSCLKNG-HHESKILITTRDR 328 (533)
Q Consensus 289 r~LlVLDdv~~~~~~~~~~--l~~~l~~~-~~gs~IiiTtR~~ 328 (533)
.=||||||+.......|.. +...+... .++ .+||||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 3588999997654444432 32322211 223 578888753
No 155
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.27 E-value=0.003 Score=61.14 Aligned_cols=140 Identities=17% Similarity=0.161 Sum_probs=71.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH--------HH----hCCCCC-CCccHHH
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII--------EG----LGVSAS-GLSEFES 276 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il--------~~----l~~~~~-~~~~~~~ 276 (533)
..+.+.|++|+|||+||+.+.. ... ...+.++.....+..+++.... .. ...... ....+.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 95 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV- 95 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec-
Confidence 3567899999999999999985 221 2344556555555444432210 00 000000 000000
Q ss_pred HHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCC----------------CCCceEEEEecchHHH------h-h
Q 045152 277 LMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNG----------------HHESKILITTRDRSVA------L-Q 333 (533)
Q Consensus 277 l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~----------------~~gs~IiiTtR~~~v~------~-~ 333 (533)
...+..... +...+++|++...+.+....|...+..+ .++.+||+|+...... . .
T Consensus 96 -~g~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL 173 (262)
T TIGR02640 96 -DNRLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDAL 173 (262)
T ss_pred -CchHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHH
Confidence 001111111 3468899999776555555555544221 1356788888753211 0 1
Q ss_pred hCCCCeeeCCCCChHhhHHHHHHh
Q 045152 334 LGSIDIIPVKELAEEECWSLLERL 357 (533)
Q Consensus 334 ~~~~~~~~l~~L~~~~~~~Lf~~~ 357 (533)
......+.+...+.++-.+++..+
T Consensus 174 ~~R~~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 174 LDRLITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred HhhcEEEECCCCCHHHHHHHHHHh
Confidence 111334566666766666666655
No 156
>PRK06921 hypothetical protein; Provisional
Probab=97.27 E-value=0.0011 Score=63.98 Aligned_cols=101 Identities=22% Similarity=0.338 Sum_probs=54.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITR 287 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 287 (533)
....+.++|..|+|||+||..+.+.. .+..-..++|++. .+++..+...+ +.....+. .+ .
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l-~~~~g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~-~~-~ 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL-MRKKGVPVLYFPF------VEGFGDLKDDF----------DLLEAKLN-RM-K 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH-hhhcCceEEEEEH------HHHHHHHHHHH----------HHHHHHHH-Hh-c
Confidence 35678999999999999999998742 2221344566653 22333332221 11111222 22 2
Q ss_pred ceEEEEEeCCCC-----CCccccch--hhhcccCC-CCCceEEEEecc
Q 045152 288 KKFFLVLDDVWD-----GDYKKWNP--FFSCLKNG-HHESKILITTRD 327 (533)
Q Consensus 288 kr~LlVLDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~IiiTtR~ 327 (533)
+--||||||+.. +....|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 345999999932 22234443 44433321 234558888864
No 157
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.0047 Score=61.66 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=65.5
Q ss_pred CceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecc-hHHHh-hhCCCCeeeCCCCChHhhHHHHHHhhccCCCc
Q 045152 287 RKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRD-RSVAL-QLGSIDIIPVKELAEEECWSLLERLAFFRRSV 364 (533)
Q Consensus 287 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~-~~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 364 (533)
+++-++|+|+++..+......|+..+....+++.+|++|.+ ..+.. .......+.+.+++.++..+.+..... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~---~- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV---A- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC---C-
Confidence 45568899999988888888898888877777777666655 44432 233357899999999999988876421 0
Q ss_pred cccccchHHHHHHHhHhCCCcchhHHH
Q 045152 365 DDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 365 ~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
. ...++..++|.|+.+..+
T Consensus 207 ----~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 ----D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ----h----HHHHHHHcCCCHHHHHHH
Confidence 0 123577889999765543
No 158
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.26 E-value=0.0014 Score=64.53 Aligned_cols=122 Identities=15% Similarity=0.196 Sum_probs=69.1
Q ss_pred echhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhC
Q 045152 186 GRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLG 265 (533)
Q Consensus 186 GR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~ 265 (533)
++..-.....+++..... .....-+.|+|..|+|||.||..+.+.. ....+ .+.++++ ..++.++...+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l-~~~g~-~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANEL-AKKGV-SSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHH-HHcCC-CEEEEEH------HHHHHHHHHHHh
Confidence 344444455555543221 1234679999999999999999999853 23333 3456654 345555544442
Q ss_pred CCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccch--hhhcc-cCC-CCCceEEEEecc
Q 045152 266 VSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNP--FFSCL-KNG-HHESKILITTRD 327 (533)
Q Consensus 266 ~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~--l~~~l-~~~-~~gs~IiiTtR~ 327 (533)
.. +...... .+ .+.=||||||+.......|.. +...+ ... ..+..+|+||..
T Consensus 205 ~~-----~~~~~l~----~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG-----SVKEKID----AV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC-----cHHHHHH----Hh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 1222222 22 245689999997766666754 43333 222 234568888864
No 159
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0085 Score=59.38 Aligned_cols=94 Identities=10% Similarity=0.010 Sum_probs=66.4
Q ss_pred CceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecch-HHHhh-hCCCCeeeCCCCChHhhHHHHHHhhccCCCc
Q 045152 287 RKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDR-SVALQ-LGSIDIIPVKELAEEECWSLLERLAFFRRSV 364 (533)
Q Consensus 287 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 364 (533)
+++-++|+|+++..+......++..+.....++.+|++|.+. .+..- ......+.+.+++.++..+.+..... .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~--~-- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS--A-- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc--c--
Confidence 556688899998888777888888887777777777777654 33322 23367899999999999988876531 1
Q ss_pred cccccchHHHHHHHhHhCCCcchhH
Q 045152 365 DDHEKLEPIGRKIAHKCKGLPLAAK 389 (533)
Q Consensus 365 ~~~~~l~~~~~~I~~~c~GlPLai~ 389 (533)
. ...+...+..++|.|+.+.
T Consensus 182 -~----~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 182 -E----ISEILTALRINYGRPLLAL 201 (325)
T ss_pred -C----hHHHHHHHHHcCCCHHHHH
Confidence 1 1124566788999996443
No 160
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0043 Score=60.58 Aligned_cols=188 Identities=16% Similarity=0.132 Sum_probs=107.5
Q ss_pred ceeechhhHHHHHHHHhCCCcc-------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSE-------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
++=|-++++++|.+...-.-.+ +-..++-|.++|++|.|||-||++|.+. .... |+.|...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~At-----FIrvvgS----- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDAT-----FIRVVGS----- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCce-----EEEeccH-----
Confidence 4567888898888875322110 2346778899999999999999999984 3333 3444332
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCC-ceEEEEEeCCCCCC-----------ccc---cchhhhcccC--CCCC
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITR-KKFFLVLDDVWDGD-----------YKK---WNPFFSCLKN--GHHE 318 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~-kr~LlVLDdv~~~~-----------~~~---~~~l~~~l~~--~~~g 318 (533)
++.+..-+ +...++..+.+..+. .+..|.+|.++... .+. .-+|+..+.. ....
T Consensus 220 ---ElVqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 220 ---ELVQKYIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred ---HHHHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 12222211 123455666666654 57899999985421 010 1112222221 1345
Q ss_pred ceEEEEecchHHHhh--hC---CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcch----hH
Q 045152 319 SKILITTRDRSVALQ--LG---SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLA----AK 389 (533)
Q Consensus 319 s~IiiTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa----i~ 389 (533)
.+||..|...++... +. -+..++++.-+.+.-.++|+-+.- .-+....-++ ..+++.|.|.-=| +.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtr-kM~l~~dvd~----e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTR-KMNLADDVDL----ELLARLTEGFSGADLKAIC 365 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhh-hccCccCcCH----HHHHHhcCCCchHHHHHHH
Confidence 689988877655432 12 266788886666666677766553 2222333344 5567777777644 33
Q ss_pred HHHHHhh
Q 045152 390 VIWNLLR 396 (533)
Q Consensus 390 ~~~~~L~ 396 (533)
+=|+++.
T Consensus 366 tEAGm~A 372 (406)
T COG1222 366 TEAGMFA 372 (406)
T ss_pred HHHhHHH
Confidence 4455554
No 161
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.23 E-value=9.7e-05 Score=64.04 Aligned_cols=88 Identities=26% Similarity=0.209 Sum_probs=46.8
Q ss_pred EEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEE
Q 045152 212 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFF 291 (533)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~L 291 (533)
|.|+|++|+|||+||+.+..- .. ....-+.++...+..+++...--. ... .......+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~--~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPS-NGQ--FEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET--TTT--TCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeec-ccc--cccccccccccc-----cceeE
Confidence 679999999999999999863 21 123345667766666554322211 000 000000000001 17889
Q ss_pred EEEeCCCCCCccccchhhhcc
Q 045152 292 LVLDDVWDGDYKKWNPFFSCL 312 (533)
Q Consensus 292 lVLDdv~~~~~~~~~~l~~~l 312 (533)
+|||++...+...+..+...+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999765544444454443
No 162
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.22 E-value=0.00061 Score=67.69 Aligned_cols=102 Identities=19% Similarity=0.250 Sum_probs=55.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCce
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKK 289 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 289 (533)
..+.++|..|+|||.||..+.+.. +... ..++|+++ .+++..+...-. .. ..+... .+ +.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l-~~~g-~~V~y~t~------~~l~~~l~~~~~-~~--~~~~~~---~~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL-LDRG-KSVIYRTA------DELIEILREIRF-NN--DKELEE---VY-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH-HHCC-CeEEEEEH------HHHHHHHHHHHh-cc--chhHHH---HH-HHhc-cC
Confidence 669999999999999999998742 2223 34556643 233333322111 10 111111 11 2222 23
Q ss_pred EEEEEeCCCCCCccccch--hhhcccCC-CCCceEEEEecc
Q 045152 290 FFLVLDDVWDGDYKKWNP--FFSCLKNG-HHESKILITTRD 327 (533)
Q Consensus 290 ~LlVLDdv~~~~~~~~~~--l~~~l~~~-~~gs~IiiTtR~ 327 (533)
=||||||+.......|.. +...+... ..+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 489999996654344432 44433321 234568888874
No 163
>PRK07261 topology modulation protein; Provisional
Probab=97.21 E-value=0.00078 Score=60.61 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999988753
No 164
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.20 E-value=0.002 Score=61.26 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=57.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
...+.++|.+|+|||+||..+.+.. ...-..+++++ ..++...+-..... ....... +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIIT------VADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEE------HHHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 3578999999999999999999852 22233455553 34444444443321 1111222 223343 3
Q ss_pred eEEEEEeCCCCCCccccch--hhhcccC-CCCCceEEEEecc
Q 045152 289 KFFLVLDDVWDGDYKKWNP--FFSCLKN-GHHESKILITTRD 327 (533)
Q Consensus 289 r~LlVLDdv~~~~~~~~~~--l~~~l~~-~~~gs~IiiTtR~ 327 (533)
.=+|||||+.......|.. +...+.. -.....+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4588999997665455653 3333321 1223457777764
No 165
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.19 E-value=0.00036 Score=70.42 Aligned_cols=64 Identities=25% Similarity=0.458 Sum_probs=53.8
Q ss_pred cccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCC
Q 045152 421 PCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLL 492 (533)
Q Consensus 421 p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~ 492 (533)
+.+..|+++.| .+..||. ...+|+.|.+.+|.++..+| ..+ .++|++|++++|++|..||+++.
T Consensus 52 ~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP--~~L--P~nLe~L~Ls~Cs~L~sLP~sLe 115 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLP--GSI--PEGLEKLTVCHCPEISGLPESVR 115 (426)
T ss_pred cCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCC--chh--hhhhhheEccCcccccccccccc
Confidence 56889999998 8899983 23579999999999999999 444 46999999999999999997653
No 166
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.00076 Score=64.69 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=50.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITR 287 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 287 (533)
+..-+.++|.+|+|||.||..+.+.. ...--.+.+++ ..++..++....... . ....+.+.+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l--~~~g~sv~f~~------~~el~~~Lk~~~~~~----~----~~~~l~~~l-~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL--LKAGISVLFIT------APDLLSKLKAAFDEG----R----LEEKLLREL-K 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhcC----c----hHHHHHHHh-h
Confidence 45578999999999999999999853 23223455554 445556665554321 1 111222212 1
Q ss_pred ceEEEEEeCCCCCCccccc
Q 045152 288 KKFFLVLDDVWDGDYKKWN 306 (533)
Q Consensus 288 kr~LlVLDdv~~~~~~~~~ 306 (533)
+-=||||||+.......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 3348999999776555555
No 167
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.18 E-value=0.0012 Score=67.97 Aligned_cols=41 Identities=22% Similarity=0.180 Sum_probs=36.0
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.++||++.++.+...+..+. .|.|.|++|+|||+||+.+..
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHH
Confidence 57999999999999886554 588999999999999999986
No 168
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.16 E-value=0.017 Score=57.81 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 189 EEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 189 ~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.-.+.+.+.+.... .....+|+|.|.=|+||||+.+.+.+.
T Consensus 3 ~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 3 PYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred HHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456666665442 257889999999999999999998764
No 169
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.002 Score=64.43 Aligned_cols=144 Identities=18% Similarity=0.163 Sum_probs=82.8
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhc-------------------cCCceE
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------NFEKVI 243 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~ 243 (533)
.++|-+....++..+..... .-...+.++|++|+||||+|..+.+.-.-.. .++.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677778888888886432 1233599999999999999988876311000 112333
Q ss_pred EEEeCCchh---HHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCce
Q 045152 244 WVCVSDTFE---EIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESK 320 (533)
Q Consensus 244 wv~vs~~~~---~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ 320 (533)
.++-+.... ..+..+++.+....... .++.-++++|+++..+.+.-..+...+......++
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444333322 12222222222221110 25677899999987766555666666666667788
Q ss_pred EEEEecch-HHHhhhC-CCCeeeCCCCC
Q 045152 321 ILITTRDR-SVALQLG-SIDIIPVKELA 346 (533)
Q Consensus 321 IiiTtR~~-~v~~~~~-~~~~~~l~~L~ 346 (533)
+|++|... .+...+. ....+++.+.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCch
Confidence 88888743 3322222 24556666633
No 170
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.13 E-value=0.0013 Score=60.18 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=35.6
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.++||-++.++++.-.-. +++..-+.|.||+|+||||-+..+.+
T Consensus 27 ~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHH
Confidence 368999998888876653 35678899999999999998877665
No 171
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.13 E-value=0.0035 Score=69.24 Aligned_cols=133 Identities=16% Similarity=0.257 Sum_probs=73.2
Q ss_pred ceeechhhHHHHHHHHhCCC---ccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCES---SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 259 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 259 (533)
.++|-++.++.+.+.+.... .........+.++|++|+|||++|+.+... .. ...+.++++...... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhcccc----c
Confidence 47898888888888875321 111234568899999999999999988763 21 223344443322111 1
Q ss_pred HHHHhCCCCCCCccHHHHHHHHHHHhC-CceEEEEEeCCCCCCccccchhhhcccCC-----------CCCceEEEEec
Q 045152 260 IIEGLGVSASGLSEFESLMKQIQEYIT-RKKFFLVLDDVWDGDYKKWNPFFSCLKNG-----------HHESKILITTR 326 (533)
Q Consensus 260 il~~l~~~~~~~~~~~~l~~~l~~~l~-~kr~LlVLDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IiiTtR 326 (533)
+.+-++.+.. ....+ ....+.+.++ ....+++||++...+.+.+..+...+..+ ...+-||+||.
T Consensus 530 ~~~LiG~~~g-yvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 530 VSRLIGAPPG-YVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred HHHHcCCCCC-ccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 1111222211 10000 0112223332 33469999999887766677776655432 12344777775
No 172
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.13 E-value=0.00011 Score=75.90 Aligned_cols=90 Identities=21% Similarity=0.322 Sum_probs=76.2
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
|.-|..|++++ ..++..|.++...+++-+|+|++ ++++.+|. +-+.+|+-|-+|+|++ .+|..||+.+..|..||+
T Consensus 102 l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn-~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 102 LKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSY-NNIETIPN-SLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred cccceeeecch-hhhhhcchhhhhhcCcEEEEccc-CccccCCc-hHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhh
Confidence 44688899998 77899999999999999999995 56999994 2344799999999999 899999999999999999
Q ss_pred eeccCCchhHHhhc
Q 045152 500 LGMEGSPLLEKRYE 513 (533)
Q Consensus 500 L~~~~c~~l~~~~~ 513 (533)
|.++++|..-=+++
T Consensus 178 L~Ls~NPL~hfQLr 191 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLR 191 (1255)
T ss_pred hhcCCChhhHHHHh
Confidence 99999997554443
No 173
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.13 E-value=0.0014 Score=73.82 Aligned_cols=136 Identities=18% Similarity=0.259 Sum_probs=75.3
Q ss_pred CceeechhhHHHHHHHHhCCCc---cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESS---EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 258 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 258 (533)
..++|-+.-++.+...+..... ..+....++.++|+.|+|||+||+.+.+. .-..-...+-++.+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 4688988888888887753211 11233556789999999999999888752 1111123333444332211111
Q ss_pred HHHHHhCCCCC--CCccHHHHHHHHHHHhCCce-EEEEEeCCCCCCccccchhhhcccCC-----------CCCceEEEE
Q 045152 259 AIIEGLGVSAS--GLSEFESLMKQIQEYITRKK-FFLVLDDVWDGDYKKWNPFFSCLKNG-----------HHESKILIT 324 (533)
Q Consensus 259 ~il~~l~~~~~--~~~~~~~l~~~l~~~l~~kr-~LlVLDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IiiT 324 (533)
..-++.++. +..... .+.+.++.++ .+++||+++..+.+.+..|...+..+ ...+-+|+|
T Consensus 585 --~~l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --HHhcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 111222111 111112 2333444444 58999999887766777777666543 234556777
Q ss_pred ecc
Q 045152 325 TRD 327 (533)
Q Consensus 325 tR~ 327 (533)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 664
No 174
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.12 E-value=0.00037 Score=46.94 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=31.9
Q ss_pred CccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCC
Q 045152 445 TTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLP 488 (533)
Q Consensus 445 ~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP 488 (533)
++|++|+++++. ++.+| +.++.|++|++|++++| .++++|
T Consensus 1 ~~L~~L~l~~N~-i~~l~--~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLP--PELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHG--GHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCC-CcccC--chHhCCCCCCEEEecCC-CCCCCc
Confidence 478999999765 88998 56899999999999996 687776
No 175
>PRK04132 replication factor C small subunit; Provisional
Probab=97.11 E-value=0.0047 Score=68.46 Aligned_cols=154 Identities=12% Similarity=0.000 Sum_probs=95.0
Q ss_pred CCCChHHHHHHHHhcchhhhccC-CceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEe
Q 045152 217 LGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLD 295 (533)
Q Consensus 217 ~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLD 295 (533)
|.++||||+|..+.++. ....+ ...+-++.++..+.. ..++++..+....+. -..+.-++|||
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 77899999999998742 11222 235667777654443 333333332110000 01245799999
Q ss_pred CCCCCCccccchhhhcccCCCCCceEEEEecch-HHHhhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHH
Q 045152 296 DVWDGDYKKWNPFFSCLKNGHHESKILITTRDR-SVALQL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPI 373 (533)
Q Consensus 296 dv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~ 373 (533)
+++..+......|...+......+++|++|.+. .+...+ .....+++.+++.++....+...+... ... --.+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~E-gi~---i~~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE-GLE---LTEEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhc-CCC---CCHHH
Confidence 998887667777877776555567777766654 332222 236789999999999888877655311 111 11446
Q ss_pred HHHHHhHhCCCcchhHH
Q 045152 374 GRKIAHKCKGLPLAAKV 390 (533)
Q Consensus 374 ~~~I~~~c~GlPLai~~ 390 (533)
...|++.++|.+..+..
T Consensus 714 L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 714 LQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 78899999998865443
No 176
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.10 E-value=0.00045 Score=68.56 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=41.5
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
+++|.++.++++++++...........+++.++|++|.||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999996654212345688999999999999999999864
No 177
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.017 Score=59.23 Aligned_cols=149 Identities=24% Similarity=0.285 Sum_probs=88.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhC
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIT 286 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 286 (533)
.....+.+.|++|+|||+||..+.. ...|+.+--++ +-++. +. .+......+...+.+.-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiS---pe~mi----------G~--sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIIS---PEDMI----------GL--SESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeC---hHHcc----------Cc--cHHHHHHHHHHHHHHhhc
Confidence 4677888999999999999998874 56787655442 11111 10 011122334444555556
Q ss_pred CceEEEEEeCCCCCCccccch------------hhhcccCC-CCCceE--EEEecchHHHhhhCC----CCeeeCCCCCh
Q 045152 287 RKKFFLVLDDVWDGDYKKWNP------------FFSCLKNG-HHESKI--LITTRDRSVALQLGS----IDIIPVKELAE 347 (533)
Q Consensus 287 ~kr~LlVLDdv~~~~~~~~~~------------l~~~l~~~-~~gs~I--iiTtR~~~v~~~~~~----~~~~~l~~L~~ 347 (533)
..--.||+||+..- -+|-. |...+... .+|-|+ +-||....+...|+- ...|+++.++.
T Consensus 597 S~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 67789999999432 23332 22233322 334454 447777788877764 56789999988
Q ss_pred -HhhHHHHHHhhccCCCccccccchHHHHHHHhHh
Q 045152 348 -EECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKC 381 (533)
Q Consensus 348 -~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c 381 (533)
++..+.++..-. -.+.+.+.++.+...+|
T Consensus 675 ~~~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELNI-----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHccC-----CCcchhHHHHHHHhccc
Confidence 777777776431 12333445555555555
No 178
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.08 E-value=0.0022 Score=59.74 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=36.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 258 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 258 (533)
+...++.|+|++|+|||+++.++... .......++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 45789999999999999999887653 223456789998865 55554443
No 179
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0012 Score=71.52 Aligned_cols=134 Identities=21% Similarity=0.350 Sum_probs=81.5
Q ss_pred CceeechhhHHHHHHHHhCCC---ccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccC---CceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCES---SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~ 255 (533)
..++|-++-++.+.+.+.... .+.+....+...+|+.|||||.||+.+... -| +..+-+++|+-....
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~EkH- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYMEKH- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHHHH-
Confidence 468999998888888775332 113456778889999999999999888752 23 334444433322111
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceE-EEEEeCCCCCCccccchhhhcccCC----C-------CCceEEE
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKF-FLVLDDVWDGDYKKWNPFFSCLKNG----H-------HESKILI 323 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~-LlVLDdv~~~~~~~~~~l~~~l~~~----~-------~gs~Iii 323 (533)
-...+-+.+++.--.++ -..|-+..+.++| +|.||++...+.+.++.|...|.++ + ..+-||+
T Consensus 565 ----sVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIIm 639 (786)
T COG0542 565 ----SVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIM 639 (786)
T ss_pred ----HHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEE
Confidence 12333333332221111 2345555667776 8889999877777777777776654 2 2455677
Q ss_pred Eec
Q 045152 324 TTR 326 (533)
Q Consensus 324 TtR 326 (533)
||.
T Consensus 640 TSN 642 (786)
T COG0542 640 TSN 642 (786)
T ss_pred ecc
Confidence 774
No 180
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.05 E-value=0.00013 Score=75.43 Aligned_cols=106 Identities=19% Similarity=0.298 Sum_probs=83.0
Q ss_pred chHHHHHHHhhhhhhcccccc-------cccceEEEee-cCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCC
Q 045152 400 TVKEWQRILDSEMWKENISIM-------PCLSVLRVYL-CPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLP 471 (533)
Q Consensus 400 ~~~~w~~~l~~~~~~~~~~il-------p~L~~L~l~~-c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~ 471 (533)
+.++|.++-.-...-..-..+ +.|+.|++-. --.|+.+|.+++.|..|+++...+ ++|+-.| ++++..+
T Consensus 263 ~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVP--EglcRC~ 339 (1255)
T KOG0444|consen 263 TEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVP--EGLCRCV 339 (1255)
T ss_pred cHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCc--hhhhhhH
Confidence 568898764433322222233 3566665533 346788999999999999999885 4588889 8999999
Q ss_pred CcceEEeccCCCCCCCCcCCCCCCCcceeeccCCchhH
Q 045152 472 RLSSLRIEYCPKLKLLPDSLLQITTLKELGMEGSPLLE 509 (533)
Q Consensus 472 ~L~~L~l~~C~~l~~lP~~~~~l~~L~~L~~~~c~~l~ 509 (533)
.|+.|+| +|..|..||+.|.-|+.|..||++.+|+|.
T Consensus 340 kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 340 KLQKLKL-DHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred HHHHhcc-cccceeechhhhhhcCCcceeeccCCcCcc
Confidence 9999999 569999999999999999999999999887
No 181
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.02 E-value=0.0036 Score=59.13 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=34.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRV 256 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l 256 (533)
....++.|+|.+|+|||++|.++... ....-..++|++.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 45789999999999999999888753 22334678899877 5555443
No 182
>PHA00729 NTP-binding motif containing protein
Probab=97.02 E-value=0.0082 Score=55.86 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
....|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998763
No 183
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.002 Score=69.95 Aligned_cols=153 Identities=22% Similarity=0.212 Sum_probs=84.4
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhc-cC-----CceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-NF-----EKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F-----~~~~wv~vs~~~~~~~ 255 (533)
.+++||++|+.++++.|..... +-. .++|.+|+|||++|.-+.. ++.. .- +..++. .++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NNP--vLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~s-----LD~g- 235 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NNP--VLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYS-----LDLG- 235 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CCC--eEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEE-----ecHH-
Confidence 3689999999999999976642 222 3689999999999866654 2211 11 111111 0111
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCC---------ccccchhhhcccCCCCCceEEEEe
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYI-TRKKFFLVLDDVWDGD---------YKKWNPFFSCLKNGHHESKILITT 325 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVLDdv~~~~---------~~~~~~l~~~l~~~~~gs~IiiTt 325 (533)
.-+-+ ..--.++++....+.+.+ +.++..|++|.++..- .+.-.-+..+|..+. --.|-.||
T Consensus 236 ------~LvAG-akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT 307 (786)
T COG0542 236 ------SLVAG-AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATT 307 (786)
T ss_pred ------HHhcc-ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEecc
Confidence 11111 111233444444444444 3458999999997621 111122333343332 23355666
Q ss_pred cchHHH------hhhCCCCeeeCCCCChHhhHHHHHH
Q 045152 326 RDRSVA------LQLGSIDIIPVKELAEEECWSLLER 356 (533)
Q Consensus 326 R~~~v~------~~~~~~~~~~l~~L~~~~~~~Lf~~ 356 (533)
-++.-- ........+.+...+.+++..+++-
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 554221 1112356788999999999988864
No 184
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.00 E-value=0.0029 Score=57.21 Aligned_cols=37 Identities=38% Similarity=0.606 Sum_probs=28.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEE
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV 245 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 245 (533)
....+|.+.|+.|+||||+|+.+++ .....+...+++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 3556999999999999999999987 344455555555
No 185
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.99 E-value=0.0066 Score=58.76 Aligned_cols=174 Identities=17% Similarity=0.185 Sum_probs=96.5
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhH-HHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE-IRVAKAI 260 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~l~~~i 260 (533)
..++|-.++..++-.++....- .++...+.|+|+.|.|||+|...+..+ .+..=+..+-|........ .-.++.|
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHH
Confidence 3578999999988888854331 244567889999999999999888875 2222233344444443332 2234445
Q ss_pred HHHhCCC----CCCCccHHHHHHHHHHHhC------CceEEEEEeCCCCCCccccchh-hhccc----CCCCCceEEEEe
Q 045152 261 IEGLGVS----ASGLSEFESLMKQIQEYIT------RKKFFLVLDDVWDGDYKKWNPF-FSCLK----NGHHESKILITT 325 (533)
Q Consensus 261 l~~l~~~----~~~~~~~~~l~~~l~~~l~------~kr~LlVLDdv~~~~~~~~~~l-~~~l~----~~~~gs~IiiTt 325 (533)
.+++..+ .....+..+....+-..|+ +-++++|+|.++-.....-..+ ...|. ...+-|-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 4444322 1112223333334444442 2368888988854321111111 11221 234556677888
Q ss_pred cchHH-------HhhhCCCCeeeCCCCChHhhHHHHHHhhc
Q 045152 326 RDRSV-------ALQLGSIDIIPVKELAEEECWSLLERLAF 359 (533)
Q Consensus 326 R~~~v-------~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~ 359 (533)
|-.-. -..+.-..++-++.++.++...++++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 86322 22222223566678888888888887663
No 186
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.018 Score=57.56 Aligned_cols=95 Identities=13% Similarity=0.008 Sum_probs=66.4
Q ss_pred CCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecch-HHHhh-hCCCCeeeCCCCChHhhHHHHHHhhccCCC
Q 045152 286 TRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDR-SVALQ-LGSIDIIPVKELAEEECWSLLERLAFFRRS 363 (533)
Q Consensus 286 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~ 363 (533)
.+++-++|+|+++..+...-..|+..+.....++.+|++|.+. .+..- ......+.+.+++.++..+.+.....
T Consensus 106 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~---- 181 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT---- 181 (334)
T ss_pred cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC----
Confidence 3566789999998887777788888887766677777777653 34432 33356789999999999887765321
Q ss_pred ccccccchHHHHHHHhHhCCCcchhH
Q 045152 364 VDDHEKLEPIGRKIAHKCKGLPLAAK 389 (533)
Q Consensus 364 ~~~~~~l~~~~~~I~~~c~GlPLai~ 389 (533)
.. .+.+..++..++|.|..+.
T Consensus 182 -~~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 182 -MS----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred -CC----HHHHHHHHHHcCCCHHHHH
Confidence 01 2235677899999997543
No 187
>PRK04296 thymidine kinase; Provisional
Probab=96.99 E-value=0.0013 Score=60.28 Aligned_cols=112 Identities=15% Similarity=0.095 Sum_probs=60.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCC--CccHHHHHHHHHHHhCC
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASG--LSEFESLMKQIQEYITR 287 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~--~~~~~~l~~~l~~~l~~ 287 (533)
.++.|+|+.|.||||+|..+... ...+-..++.+. ..++.......+..+++..... .....++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999777653 222333333331 1112222233445555432211 1233444445544 333
Q ss_pred ceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecch
Q 045152 288 KKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDR 328 (533)
Q Consensus 288 kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~ 328 (533)
+.-+||+|.+.-.+.++...+...+ ...|..||+|.++.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~ 116 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDT 116 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 5568999999433222222233322 24577899998874
No 188
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.97 E-value=0.004 Score=62.25 Aligned_cols=102 Identities=14% Similarity=0.053 Sum_probs=63.7
Q ss_pred HHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCc-eEEEEeCC-chhHHHHHHHHHHHhCCCC
Q 045152 191 KNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK-VIWVCVSD-TFEEIRVAKAIIEGLGVSA 268 (533)
Q Consensus 191 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~-~~~~~~l~~~il~~l~~~~ 268 (533)
..++++.+..- +...-+.|+|.+|+|||||++.+.+.. ...+-+. ++|+.+.+ ..++.++++.+...+....
T Consensus 120 ~~RvID~l~Pi-----GkGQR~LIvG~pGtGKTTLl~~la~~i-~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 120 SMRVVDLVAPI-----GKGQRGLIVAPPRAGKTVLLQQIAAAV-AANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hHhhhhheeec-----CCCceEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 45577777543 234567999999999999999988742 1223344 46666654 4567888888887766543
Q ss_pred CCCccHH-----HHHHHHHHHh--CCceEEEEEeCCC
Q 045152 269 SGLSEFE-----SLMKQIQEYI--TRKKFFLVLDDVW 298 (533)
Q Consensus 269 ~~~~~~~-----~l~~~l~~~l--~~kr~LlVLDdv~ 298 (533)
.+..... .....+.+++ .+++.+||+|++.
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 2221111 1111222222 5789999999993
No 189
>PLN03150 hypothetical protein; Provisional
Probab=96.97 E-value=0.00085 Score=73.17 Aligned_cols=88 Identities=16% Similarity=0.058 Sum_probs=72.7
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCC-CCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQI-TTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l-~~L~ 498 (533)
++.|+.|.++.+..-..+|..+..+.+|+.|+|+++.--..+| +.++.|++|+.|+|++|.--..+|..+..+ .++.
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP--~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP--ESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc--hHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 5689999999876556899999999999999999876444788 789999999999999976556899887763 5778
Q ss_pred eeeccCCchhH
Q 045152 499 ELGMEGSPLLE 509 (533)
Q Consensus 499 ~L~~~~c~~l~ 509 (533)
.+++.+++.+.
T Consensus 519 ~l~~~~N~~lc 529 (623)
T PLN03150 519 SFNFTDNAGLC 529 (623)
T ss_pred eEEecCCcccc
Confidence 89988887544
No 190
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.92 E-value=0.0091 Score=66.65 Aligned_cols=180 Identities=16% Similarity=0.152 Sum_probs=94.9
Q ss_pred CceeechhhHHHHHHHHhCCCcc-------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSE-------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (533)
.++.|.+..++.|.+.+...-.. +-...+-+.++|++|.|||+||+.+.+. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 35778888777777765321100 1123456889999999999999999874 22222 222211
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC------ccc------cchhhhcccC--CCCCce
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGD------YKK------WNPFFSCLKN--GHHESK 320 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~------~~~------~~~l~~~l~~--~~~gs~ 320 (533)
+++....+ .....+...+...-...+.+|+||+++... ... ...+...+.. ...+..
T Consensus 522 ----~l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 11111111 111222233333334567899999985320 000 1112222221 123445
Q ss_pred EEEEecchHHHhh--h---CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc
Q 045152 321 ILITTRDRSVALQ--L---GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL 386 (533)
Q Consensus 321 IiiTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 386 (533)
||.||..++.... . .....+.++..+.++-.++|+.... ........++ ..+++.+.|.-=
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~-~~~~~~~~~l----~~la~~t~g~sg 658 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR-SMPLAEDVDL----EELAEMTEGYTG 658 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc-CCCCCccCCH----HHHHHHcCCCCH
Confidence 6667766543321 1 2256788899999999999876542 1111122223 556777877653
No 191
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.92 E-value=0.019 Score=57.99 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=69.1
Q ss_pred eEEEEEeCCCCCCcc---ccchhh---hcccCCCCCceEEEEecchHHHh----hhC--CCCeeeCCCCChHhhHHHHHH
Q 045152 289 KFFLVLDDVWDGDYK---KWNPFF---SCLKNGHHESKILITTRDRSVAL----QLG--SIDIIPVKELAEEECWSLLER 356 (533)
Q Consensus 289 r~LlVLDdv~~~~~~---~~~~l~---~~l~~~~~gs~IiiTtR~~~v~~----~~~--~~~~~~l~~L~~~~~~~Lf~~ 356 (533)
+-+||||+.-..... -|+.+. ..+-. .+-..||++|-+..... .+. ..+.+.|...+.+.|..+...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 679999999553211 122221 22222 23456888877654433 332 257789999999999999998
Q ss_pred hhccCCCc------------ccc----ccchHHHHHHHhHhCCCcchhHHHHHHhhcccch
Q 045152 357 LAFFRRSV------------DDH----EKLEPIGRKIAHKCKGLPLAAKVIWNLLRSKSTV 401 (533)
Q Consensus 357 ~a~~~~~~------------~~~----~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~ 401 (533)
+.-..... ... .....-....+..+||=-.-+..+++-++...++
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 77422100 000 1233444667888899888899888888876644
No 192
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.92 E-value=0.00069 Score=58.61 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=61.4
Q ss_pred eechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhh-hccCCceEEEEeCCchhHHHHHHHHHHH
Q 045152 185 CGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV-KRNFEKVIWVCVSDTFEEIRVAKAIIEG 263 (533)
Q Consensus 185 vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~l~~~il~~ 263 (533)
||....+.++.+.+..-. .....|.|.|..|.||+++|+.++..... ...|... .... .+ .++++.
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-~~-----~~~l~~ 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-LP-----AELLEQ 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC-TC-----HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh-Cc-----HHHHHH
Confidence 567777777777765432 23456799999999999999999874221 1112110 0000 00 111111
Q ss_pred hCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCC-CCCceEEEEecch
Q 045152 264 LGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNG-HHESKILITTRDR 328 (533)
Q Consensus 264 l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~-~~gs~IiiTtR~~ 328 (533)
. +.--++|+|+..-+.+....+...+... ....|+|.||...
T Consensus 68 ---------------------a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 ---------------------A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---------------------C--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---------------------c--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1 3345789999776655555666666532 5678999998753
No 193
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.017 Score=61.38 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=41.2
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+-+|.++-+++|++++.-..-.++-+..+++.+|++|||||++|+.+..
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH
Confidence 45689999999999998544322345678999999999999999999986
No 194
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.87 E-value=0.0019 Score=68.29 Aligned_cols=78 Identities=22% Similarity=0.262 Sum_probs=55.2
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh
Q 045152 206 QKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI 285 (533)
Q Consensus 206 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l 285 (533)
.+.-+++.+.|++|+||||||..+.++. .| .++=|+.|+.-+...+-..|...+....... .
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------a 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------A 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhccccc-------------c
Confidence 3567899999999999999999998642 23 3567888888777777666666554322110 1
Q ss_pred CCceEEEEEeCCCCCC
Q 045152 286 TRKKFFLVLDDVWDGD 301 (533)
Q Consensus 286 ~~kr~LlVLDdv~~~~ 301 (533)
.+++..+|+|.++...
T Consensus 385 dsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAP 400 (877)
T ss_pred CCCcceEEEecccCCc
Confidence 2577889999996654
No 195
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.86 E-value=0.0021 Score=57.50 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=32.6
Q ss_pred eeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 184 VCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 184 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
++|.+..+.++.+.+.... .....|.|+|..|.||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a----~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----SSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----TSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHh----CCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 4677888888888775443 22356779999999999999999973
No 196
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.85 E-value=0.008 Score=56.08 Aligned_cols=178 Identities=19% Similarity=0.155 Sum_probs=97.5
Q ss_pred CceeechhhHH---HHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHH
Q 045152 182 GEVCGRVEEKN---ELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 258 (533)
Q Consensus 182 ~~~vGR~~e~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 258 (533)
++++|-++.+. -|++.|...+.-++-.++-|..+|++|.|||.+|+.+.+...+ .| +.+. ..+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vk----at~--- 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVK----ATE--- 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEec----hHH---
Confidence 46889877654 4566665444334566889999999999999999999985322 22 2211 111
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCCc------------cccchhhhccc--CCCCCceEEE
Q 045152 259 AIIEGLGVSASGLSEFESLMKQIQEYI-TRKKFFLVLDDVWDGDY------------KKWNPFFSCLK--NGHHESKILI 323 (533)
Q Consensus 259 ~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVLDdv~~~~~------------~~~~~l~~~l~--~~~~gs~Iii 323 (533)
-|-+.++ +....+..+.+.. +.-++++.||.++.... +....|+.-+. ..+.|...|-
T Consensus 187 liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 187 LIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 1222221 1122222333333 44689999998853210 01111222221 1245666666
Q ss_pred EecchHHHhhh-C--CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCc
Q 045152 324 TTRDRSVALQL-G--SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLP 385 (533)
Q Consensus 324 TtR~~~v~~~~-~--~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 385 (533)
.|.++...... . ....++...-+.+|-.+++...+-. - +-....-.+.++++.+|+.
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~--~---Plpv~~~~~~~~~~t~g~S 319 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK--F---PLPVDADLRYLAAKTKGMS 319 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh--C---CCccccCHHHHHHHhCCCC
Confidence 66666554322 1 2445677777888888888887631 1 1111222466777777765
No 197
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.84 E-value=0.0073 Score=56.66 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=32.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchh
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE 252 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 252 (533)
....++.|.|.+|+||||+|.++... ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 45789999999999999999887753 222334677887655544
No 198
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0062 Score=63.53 Aligned_cols=164 Identities=18% Similarity=0.234 Sum_probs=94.7
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 262 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 262 (533)
++||-+.-...|...+.... -..-....|+-|+||||+|+.+..-..-.. + ....+.+.-..-+.|..
T Consensus 17 evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhc
Confidence 57999888899988885432 344556789999999999988764211010 0 00111111111122222
Q ss_pred HhCC--------CCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecc-hHHH-
Q 045152 263 GLGV--------SASGLSEFESLMKQIQEYI-TRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRD-RSVA- 331 (533)
Q Consensus 263 ~l~~--------~~~~~~~~~~l~~~l~~~l-~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~-~~v~- 331 (533)
.-.. ......+..++.+.+.-.- .++.=+.|+|+|+-.....|..++..+.........|+.|.+ ..+.
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 1000 0111122222222222111 345568899999877777888888877766556666665554 3333
Q ss_pred hhhCCCCeeeCCCCChHhhHHHHHHhh
Q 045152 332 LQLGSIDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 332 ~~~~~~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
........|.++.++.++-...+...+
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~ 191 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAIL 191 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHH
Confidence 233446789999999998888777665
No 199
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.83 E-value=0.00023 Score=69.96 Aligned_cols=81 Identities=30% Similarity=0.430 Sum_probs=67.5
Q ss_pred cceEEEeecCCcccCCcccc-ccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcceee
Q 045152 423 LSVLRVYLCPKLKVLPDYLL-QTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKELG 501 (533)
Q Consensus 423 L~~L~l~~c~~l~~lp~~l~-~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~L~ 501 (533)
|+.|.+.. ..++.+|..++ ++.+|.+|++.+-+ +++.| .+++.|.+|++|++++ ..+..||.+++++ .|+.|-
T Consensus 230 L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNk-lke~P--de~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 230 LKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVP--DEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLA 303 (565)
T ss_pred HHHHHhcc-cHHHhhHHHHhcccccceeeeccccc-cccCc--hHHHHhhhhhhhcccC-CccccCCcccccc-eeeehh
Confidence 44444443 45567776665 79999999999654 99999 7999999999999999 8999999999999 999999
Q ss_pred ccCCchhH
Q 045152 502 MEGSPLLE 509 (533)
Q Consensus 502 ~~~c~~l~ 509 (533)
+.|+|.-+
T Consensus 304 leGNPlrT 311 (565)
T KOG0472|consen 304 LEGNPLRT 311 (565)
T ss_pred hcCCchHH
Confidence 99999543
No 200
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.83 E-value=0.0084 Score=56.57 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=53.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccC------CceEEEEeCCchhHHHHHHHHHHHhCCCC---------CCC
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF------EKVIWVCVSDTFEEIRVAKAIIEGLGVSA---------SGL 271 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~l~~~il~~l~~~~---------~~~ 271 (533)
....++.|+|.+|.|||+||..+.... .... ..++|++....++...+. .+........ ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 456799999999999999998876431 1222 567899887776655443 3333322110 011
Q ss_pred ccHHHHHHHHHHHhC----CceEEEEEeCCC
Q 045152 272 SEFESLMKQIQEYIT----RKKFFLVLDDVW 298 (533)
Q Consensus 272 ~~~~~l~~~l~~~l~----~kr~LlVLDdv~ 298 (533)
.+.+++...+..... .+.-|+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 234444444444432 345588899883
No 201
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.82 E-value=0.0061 Score=57.36 Aligned_cols=207 Identities=13% Similarity=0.135 Sum_probs=113.7
Q ss_pred eeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc----hhhhccCCceEEEEeCC----------
Q 045152 184 VCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN----DEVKRNFEKVIWVCVSD---------- 249 (533)
Q Consensus 184 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~----~~~~~~F~~~~wv~vs~---------- 249 (533)
+.++++....+..... .....-+.++|+.|.||-|.+-.+.+. .--+-.-+...|.+-+.
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5566666666666553 245678899999999999887554432 11122233444543222
Q ss_pred ch-----------hHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceE-EEEEeCCCCCCccccchhhhcccCCCC
Q 045152 250 TF-----------EEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKF-FLVLDDVWDGDYKKWNPFFSCLKNGHH 317 (533)
Q Consensus 250 ~~-----------~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~-LlVLDdv~~~~~~~~~~l~~~l~~~~~ 317 (533)
++ ...-+.++|+++.....+-. .-..+.| ++|+-.+++-..+.-..+......-.+
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 21 11233444444432211100 0012333 566777755443444445554444456
Q ss_pred CceEEEEecch-HHHhhh-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHHh
Q 045152 318 ESKILITTRDR-SVALQL-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLL 395 (533)
Q Consensus 318 gs~IiiTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 395 (533)
.+|+|+...+- .+...+ ...-.++++..+++|....+++.+- .+.-..| .+++.+|+++++|+-.-+..+-..+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~--kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLK--KEGLQLP--KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHH--HhcccCc--HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 78888755432 122222 2245689999999999999988763 1111222 6789999999999765544444433
Q ss_pred hccc----------chHHHHHHHhhhh
Q 045152 396 RSKS----------TVKEWQRILDSEM 412 (533)
Q Consensus 396 ~~~~----------~~~~w~~~l~~~~ 412 (533)
+.+. ..-+|+-++.+..
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHH
Confidence 3221 2357888876533
No 202
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.82 E-value=0.00082 Score=56.56 Aligned_cols=21 Identities=43% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 203
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.81 E-value=0.036 Score=58.84 Aligned_cols=202 Identities=15% Similarity=0.123 Sum_probs=117.0
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhh------hccCCceEEEEeCCchhHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV------KRNFEKVIWVCVSDTFEEIRV 256 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------~~~F~~~~wv~vs~~~~~~~l 256 (533)
.+-+|+.|..+|..++...-++ +...+.+-|.|-+|.|||..+..|.+.... -..|+ .+.|+.-.-..+.++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 4668999999999988665542 345569999999999999999999874221 12343 344555555568899
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHhC-----CceEEEEEeCCCCCCccccchhhhcccC-CCCCceEEEEecc--h
Q 045152 257 AKAIIEGLGVSASGLSEFESLMKQIQEYIT-----RKKFFLVLDDVWDGDYKKWNPFFSCLKN-GHHESKILITTRD--R 328 (533)
Q Consensus 257 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l~-----~kr~LlVLDdv~~~~~~~~~~l~~~l~~-~~~gs~IiiTtR~--~ 328 (533)
+..|..++.+.... .......+..+.. .+..++++|+++.--...-+-+...|.+ ..++|+++|.+=. .
T Consensus 475 Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 475 YEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 99999999875422 2233334444432 3568899998843211111224444443 3567777664421 1
Q ss_pred H---------HHhhhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 329 S---------VALQLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 329 ~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
+ ++..++ ...+...+-++++-.++...+..+. ......-.+=++++|+.-.|-.-.|+...
T Consensus 552 dlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred cCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 1 111111 2456677777887777776665321 11222223334555555555555554443
No 204
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.81 E-value=0.01 Score=59.01 Aligned_cols=71 Identities=10% Similarity=0.108 Sum_probs=46.4
Q ss_pred CceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchH-HHhhh-CCCCeeeCCCCChHhhHHHHHHh
Q 045152 287 RKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRS-VALQL-GSIDIIPVKELAEEECWSLLERL 357 (533)
Q Consensus 287 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~ 357 (533)
+++-++|+|++...+...-..+...+.....++.+|++|.+.. +...+ .....+.+.+++.++..+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556788877665556666666654445566777777643 33222 22567899999999998887653
No 205
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.79 E-value=0.0075 Score=67.33 Aligned_cols=178 Identities=15% Similarity=0.104 Sum_probs=90.6
Q ss_pred ceeechhhHHHHHHHHhCCCcc-------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSE-------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
++.|.+..++++.+++...-.. +-...+.+.++|++|.|||+||+.+.+. .... ++.++.. +
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~-----~i~i~~~----~ 247 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAY-----FISINGP----E 247 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCe-----EEEEecH----H
Confidence 5789999999888876321100 1123467889999999999999999873 2222 2222211 1
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCcc-----------ccchhhhcccCC-CCCceEEE
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYK-----------KWNPFFSCLKNG-HHESKILI 323 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~-----------~~~~l~~~l~~~-~~gs~Iii 323 (533)
+ ..... ......+...+.......+.+|+|||++..... ....+...+... ..+..++|
T Consensus 248 i----~~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 248 I----MSKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred H----hcccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE
Confidence 1 11100 011122333333344556789999998542100 011233323211 22333444
Q ss_pred -EecchH-HHhhh----CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCc
Q 045152 324 -TTRDRS-VALQL----GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLP 385 (533)
Q Consensus 324 -TtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 385 (533)
||.... +...+ .....+.+...+.++-.+++....- ........ ....+++.+.|.-
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~-~~~l~~d~----~l~~la~~t~G~~ 381 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR-NMPLAEDV----DLDKLAEVTHGFV 381 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc-CCCCcccc----CHHHHHHhCCCCC
Confidence 554432 21111 1135677888888888888875432 11111111 2355666777654
No 206
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.78 E-value=0.0029 Score=67.49 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=35.8
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
+++|.+..++.+...+... ....+.|+|++|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999988876432 3456789999999999999999863
No 207
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.77 E-value=0.012 Score=61.70 Aligned_cols=181 Identities=15% Similarity=0.092 Sum_probs=91.1
Q ss_pred ceeechhhHHHHHHHHhCC----CccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCE----SSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 258 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~----~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 258 (533)
++.|.+..++.+.+....- ...+-...+-|.++|++|.|||.+|+.+.+. ....| +-+..+ .
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~------~--- 294 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVG------K--- 294 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhH------H---
Confidence 5677766665555432110 0001234577899999999999999999873 22221 111111 1
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc--cc----------cchhhhcccCCCCCceEEEEec
Q 045152 259 AIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDY--KK----------WNPFFSCLKNGHHESKILITTR 326 (533)
Q Consensus 259 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~--~~----------~~~l~~~l~~~~~gs~IiiTtR 326 (533)
+.....+ .....+...+...-...+++|++|+++..-. .. ...+...+.....+.-||.||.
T Consensus 295 -l~~~~vG-----ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN 368 (489)
T CHL00195 295 -LFGGIVG-----ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN 368 (489)
T ss_pred -hcccccC-----hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 1111100 1112222223222235789999999964210 00 0112222222233444666776
Q ss_pred chHHH-hhh----CCCCeeeCCCCChHhhHHHHHHhhccCCCc-cccccchHHHHHHHhHhCCCcch
Q 045152 327 DRSVA-LQL----GSIDIIPVKELAEEECWSLLERLAFFRRSV-DDHEKLEPIGRKIAHKCKGLPLA 387 (533)
Q Consensus 327 ~~~v~-~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~-~~~~~l~~~~~~I~~~c~GlPLa 387 (533)
+.... ..+ .....+.++.-+.++-.++|..+....... ....+ ...+++.+.|.-=|
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfSGA 431 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFSGA 431 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccC----HHHHHhhcCCCCHH
Confidence 54321 111 225678888889999999998776421111 11122 35566677666543
No 208
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.70 E-value=0.008 Score=57.81 Aligned_cols=89 Identities=25% Similarity=0.381 Sum_probs=53.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEEEeCCchhHHHHHHHHHHHhCCCCC---------CCccH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS---------GLSEF 274 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~---------~~~~~ 274 (533)
...+.=|+|++|+|||.|+..++-...+.. .=..++||+....|+..++.+ |++..+.... ...+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-HhhccccccchhhhceeeeecCCH
Confidence 456888999999999999977754322222 224699999999998877754 6665443210 01122
Q ss_pred HHH---HHHHHHHh-CCceEEEEEeCC
Q 045152 275 ESL---MKQIQEYI-TRKKFFLVLDDV 297 (533)
Q Consensus 275 ~~l---~~~l~~~l-~~kr~LlVLDdv 297 (533)
+++ ...+...+ .++--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 233 33333333 344568888888
No 209
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.68 E-value=0.001 Score=59.71 Aligned_cols=82 Identities=24% Similarity=0.349 Sum_probs=35.2
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCC-CCCCCcceEEeccCCCCCCCCc--CCCCCCC
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDH-IFLPRLSSLRIEYCPKLKLLPD--SLLQITT 496 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~-~~l~~L~~L~l~~C~~l~~lP~--~~~~l~~ 496 (533)
+..|+.|+++. ..+..++ ++..+..|+.|++++ ..+..++ +.+ ..+|+|+.|++++ .++..+-+ .+..+++
T Consensus 41 l~~L~~L~Ls~-N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~--~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~ 114 (175)
T PF14580_consen 41 LDKLEVLDLSN-NQITKLE-GLPGLPRLKTLDLSN-NRISSIS--EGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPK 114 (175)
T ss_dssp -TT--EEE-TT-S--S--T-T----TT--EEE--S-S---S-C--HHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT
T ss_pred hcCCCEEECCC-CCCcccc-CccChhhhhhcccCC-CCCCccc--cchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCC
Confidence 45678888877 4556665 566788888898884 4577775 333 3578999999988 77777653 4566888
Q ss_pred cceeeccCCch
Q 045152 497 LKELGMEGSPL 507 (533)
Q Consensus 497 L~~L~~~~c~~ 507 (533)
|++|++.|+|.
T Consensus 115 L~~L~L~~NPv 125 (175)
T PF14580_consen 115 LRVLSLEGNPV 125 (175)
T ss_dssp --EEE-TT-GG
T ss_pred cceeeccCCcc
Confidence 99999999985
No 210
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.68 E-value=0.01 Score=56.36 Aligned_cols=90 Identities=18% Similarity=0.262 Sum_probs=53.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEEEeCCchhHHHHHHHHHHHhCCCC------------CC
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLGVSA------------SG 270 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~------------~~ 270 (533)
....++.|+|.+|+|||+|+.++.-...... ....++|++....++..++.+ +++..+... ..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 4568999999999999999988864322221 136789999887776554433 333332211 01
Q ss_pred CccHHHHHHHHHHHhC-C-ceEEEEEeCC
Q 045152 271 LSEFESLMKQIQEYIT-R-KKFFLVLDDV 297 (533)
Q Consensus 271 ~~~~~~l~~~l~~~l~-~-kr~LlVLDdv 297 (533)
..+.......+...+. . +.-++|+|.+
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 1122233344444442 3 5668888888
No 211
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.68 E-value=0.0091 Score=58.34 Aligned_cols=88 Identities=23% Similarity=0.249 Sum_probs=46.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-hhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIT 286 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 286 (533)
...++.|+|++|+||||++..+......+..-..+..|+.... ......+....+.++.+.....+...+...+.. +.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-cc
Confidence 4679999999999999999888753222211124555654331 112223333333344332222333444444443 33
Q ss_pred CceEEEEEeCC
Q 045152 287 RKKFFLVLDDV 297 (533)
Q Consensus 287 ~kr~LlVLDdv 297 (533)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 347777754
No 212
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.017 Score=58.03 Aligned_cols=90 Identities=12% Similarity=0.267 Sum_probs=48.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-hhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIT 286 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 286 (533)
..++|+++|++|+||||++..+... ....-..+..++.... ....+-++...+.++.+-....+...+...+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4579999999999999999888753 2222123445543321 122333334444444332222344455554444322
Q ss_pred C-ceEEEEEeCCCC
Q 045152 287 R-KKFFLVLDDVWD 299 (533)
Q Consensus 287 ~-kr~LlVLDdv~~ 299 (533)
. +.=++++|-.-.
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 1 345778887754
No 213
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.67 E-value=0.013 Score=61.43 Aligned_cols=132 Identities=22% Similarity=0.313 Sum_probs=73.8
Q ss_pred CeEEEEEEcCCCChHHH-HHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC------------CC---
Q 045152 208 GLHVISLVGLGGIGKTT-LAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS------------GL--- 271 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~------------~~--- 271 (533)
.-.||.|+|..|.|||| |+|.+|.+.-.. ...+=++-....-...+.+.+.+.++..-. ..
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~edGY~~---~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T 446 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLYEDGYAD---NGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDT 446 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHHhccccc---CCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCce
Confidence 45699999999999987 678888752111 122222222333445666777777644311 00
Q ss_pred -----ccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhccc---CCCCCceEEEEecc---hHHHhhhCCCCee
Q 045152 272 -----SEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLK---NGHHESKILITTRD---RSVALQLGSIDII 340 (533)
Q Consensus 272 -----~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~---~~~~gs~IiiTtR~---~~v~~~~~~~~~~ 340 (533)
.+.--+.+.|.+..-+|--.||+|..++... .-+.+...+. .....-++||||-. +..+..++....+
T Consensus 447 ~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERsl-NtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~f 525 (1042)
T KOG0924|consen 447 KIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSL-NTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQF 525 (1042)
T ss_pred eEEEeccchHHHHHhhhhhhhheeEEEechhhhccc-chHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCcee
Confidence 1222344445555556777999999976532 2233333332 23346789999865 4455556644444
Q ss_pred eCC
Q 045152 341 PVK 343 (533)
Q Consensus 341 ~l~ 343 (533)
.++
T Consensus 526 ~Ip 528 (1042)
T KOG0924|consen 526 TIP 528 (1042)
T ss_pred eec
Confidence 443
No 214
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.65 E-value=0.02 Score=51.10 Aligned_cols=125 Identities=22% Similarity=0.253 Sum_probs=71.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE---------------------eCCch---------------
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC---------------------VSDTF--------------- 251 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---------------------vs~~~--------------- 251 (533)
....+.|+|++|.|||||.+.+|...+. =...+|++ |-+++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 4568999999999999999999975322 22344442 00111
Q ss_pred ------hHHHH---HHHHHHHhCCC------CCCCccHHHHHHHHHHHhCCceEEEEEeCCCC-CC-ccccchhhhcccC
Q 045152 252 ------EEIRV---AKAIIEGLGVS------ASGLSEFESLMKQIQEYITRKKFFLVLDDVWD-GD-YKKWNPFFSCLKN 314 (533)
Q Consensus 252 ------~~~~l---~~~il~~l~~~------~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~-~~-~~~~~~l~~~l~~ 314 (533)
...++ ..+.++.++.. +....--++..-.+...+-+++-+++-|.--- -+ ...|+-+.-.-.-
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 11122 22223333322 11223344555566777778888999886521 11 1345543332234
Q ss_pred CCCCceEEEEecchHHHhhhC
Q 045152 315 GHHESKILITTRDRSVALQLG 335 (533)
Q Consensus 315 ~~~gs~IiiTtR~~~v~~~~~ 335 (533)
+..|+.|+++|.+..+-..+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hhcCcEEEEEeccHHHHHhcc
Confidence 567999999999988776653
No 215
>PRK13695 putative NTPase; Provisional
Probab=96.64 E-value=0.0017 Score=58.56 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
-|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998864
No 216
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.64 E-value=0.0095 Score=54.77 Aligned_cols=89 Identities=22% Similarity=0.225 Sum_probs=50.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC-CchhHHHHHHHHHHHhCCCC---CCCccH-HHHHHHHHH
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS-DTFEEIRVAKAIIEGLGVSA---SGLSEF-ESLMKQIQE 283 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~l~~~il~~l~~~~---~~~~~~-~~l~~~l~~ 283 (533)
+.+|.++|+.|+||||.+-++...... +-..+..++.. ......+-++...+.++.+. ....+. +.+...+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~--~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKL--KGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhh--ccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 468999999999999998777653222 24456667654 23455666777777777542 112222 223333433
Q ss_pred HhCCceEEEEEeCCCC
Q 045152 284 YITRKKFFLVLDDVWD 299 (533)
Q Consensus 284 ~l~~kr~LlVLDdv~~ 299 (533)
.-..+.=++++|=.-.
T Consensus 79 ~~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHHTTSSEEEEEE-SS
T ss_pred HhhcCCCEEEEecCCc
Confidence 3233344778886643
No 217
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.63 E-value=0.0072 Score=60.43 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=34.2
Q ss_pred eeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 184 VCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 184 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
++|....+.++.+.+.... .....|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHh
Confidence 4677777777777765443 23456899999999999999999863
No 218
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.63 E-value=0.0034 Score=57.68 Aligned_cols=132 Identities=22% Similarity=0.267 Sum_probs=61.4
Q ss_pred echhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC----Cch-----hHH--
Q 045152 186 GRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS----DTF-----EEI-- 254 (533)
Q Consensus 186 GR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs----~~~-----~~~-- 254 (533)
.+..+....++.|. ...++.+.|++|.|||.||-...-+.-....|+..+++.-. +.. +..
T Consensus 4 p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 35566667777775 23589999999999999997666544445777777776411 110 000
Q ss_pred --HHHHHHHHHhCCCCCCCccHHHHHHH------HHHHhCCc---eEEEEEeCCCCCCccccchhhhcccCCCCCceEEE
Q 045152 255 --RVAKAIIEGLGVSASGLSEFESLMKQ------IQEYITRK---KFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILI 323 (533)
Q Consensus 255 --~l~~~il~~l~~~~~~~~~~~~l~~~------l~~~l~~k---r~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Iii 323 (533)
-.+.-+...+..-- .....+.+... -..+++++ ..++|+|++.+....++..+ +-..+.||++|+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEE
Confidence 01111122221100 11112221110 01234554 46999999966554444444 555677899999
Q ss_pred EecchH
Q 045152 324 TTRDRS 329 (533)
Q Consensus 324 TtR~~~ 329 (533)
+--..+
T Consensus 152 ~GD~~Q 157 (205)
T PF02562_consen 152 TGDPSQ 157 (205)
T ss_dssp EE----
T ss_pred ecCcee
Confidence 876543
No 219
>PRK06696 uridine kinase; Validated
Probab=96.62 E-value=0.0024 Score=60.16 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 187 RVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 187 R~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
|.+-+++|.+.+.... .+...+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 5667778888876533 256889999999999999999999863
No 220
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.61 E-value=0.011 Score=58.44 Aligned_cols=59 Identities=24% Similarity=0.327 Sum_probs=41.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhh----ccCCceEEEEeCCchhHHHHHHHHHHHhCC
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSDTFEEIRVAKAIIEGLGV 266 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 266 (533)
...+++-|+|++|+|||+|+..+.-..... ..-..++||+....|+.+++.+ +++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 456889999999999999997665322221 1124789999998888887654 5566554
No 221
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.59 E-value=0.0091 Score=58.95 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=55.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCC-----CCCccHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSA-----SGLSEFESLMKQI 281 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~-----~~~~~~~~l~~~l 281 (533)
+.-+++-|+|++|+||||||.+++.. ....-..++||+....++.. .++.++... ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 46779999999999999999877653 33345678899887766653 333443321 1122345555555
Q ss_pred HHHhC-CceEEEEEeCCC
Q 045152 282 QEYIT-RKKFFLVLDDVW 298 (533)
Q Consensus 282 ~~~l~-~kr~LlVLDdv~ 298 (533)
...++ +..-++|+|-+-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55554 356689999983
No 222
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.58 E-value=0.0096 Score=55.00 Aligned_cols=107 Identities=20% Similarity=0.257 Sum_probs=65.0
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
..++|-+..++.+.+--.... .....--|.+||.-|.|||+|++++.+. +.......+-|+ ..
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glrLVEV~--k~----------- 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNE--YADEGLRLVEVD--KE----------- 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHH--HHhcCCeEEEEc--HH-----------
Confidence 358999988888877543322 1234456889999999999999999873 444443333322 11
Q ss_pred HHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCC-CCccccchhhhcccCC
Q 045152 262 EGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWD-GDYKKWNPFFSCLKNG 315 (533)
Q Consensus 262 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~-~~~~~~~~l~~~l~~~ 315 (533)
+..++..+.+.++ ...+||.|..||+-- .....+..+...+..+
T Consensus 123 --------dl~~Lp~l~~~Lr--~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ 167 (287)
T COG2607 123 --------DLATLPDLVELLR--ARPEKFILFCDDLSFEEGDDAYKALKSALEGG 167 (287)
T ss_pred --------HHhhHHHHHHHHh--cCCceEEEEecCCCCCCCchHHHHHHHHhcCC
Confidence 1111222222222 246899999999942 2334567777777644
No 223
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.56 E-value=0.0016 Score=68.13 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=39.6
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+++|.++.+++|++.|......-....+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999433211234567999999999999999999986
No 224
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.55 E-value=0.0013 Score=58.97 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=29.2
Q ss_pred ccceEEEeecCCcccCCcccc-ccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCC-CCCCcce
Q 045152 422 CLSVLRVYLCPKLKVLPDYLL-QTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLL-QITTLKE 499 (533)
Q Consensus 422 ~L~~L~l~~c~~l~~lp~~l~-~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~-~l~~L~~ 499 (533)
.++.|++.+ ..+..+ +.+. .+.+|+.|+++++. +..++ ++..|++|+.|++++ .+|+++++++. ++++|++
T Consensus 20 ~~~~L~L~~-n~I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~---~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRG-NQISTI-ENLGATLDKLEVLDLSNNQ-ITKLE---GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS---S--T---T----TT--EEE--S-S---S-CHHHHHH-TT--E
T ss_pred ccccccccc-cccccc-cchhhhhcCCCEEECCCCC-Ccccc---CccChhhhhhcccCC-CCCCccccchHHhCCcCCE
Confidence 356677766 333443 3555 57899999999766 77777 677799999999999 89999987664 5899999
Q ss_pred eeccCCch
Q 045152 500 LGMEGSPL 507 (533)
Q Consensus 500 L~~~~c~~ 507 (533)
|+++++.+
T Consensus 93 L~L~~N~I 100 (175)
T PF14580_consen 93 LYLSNNKI 100 (175)
T ss_dssp EE-TTS--
T ss_pred EECcCCcC
Confidence 99987764
No 225
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.54 E-value=0.011 Score=63.45 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=39.2
Q ss_pred cCCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 180 DEGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 180 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
....++|....+.++.+.+.... .....|.|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHh
Confidence 34579999999999888875443 23456789999999999999999874
No 226
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.52 E-value=0.021 Score=51.86 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=65.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE---eCCchhHHH------HHHHHHHHhCCCC------CCCc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC---VSDTFEEIR------VAKAIIEGLGVSA------SGLS 272 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~------l~~~il~~l~~~~------~~~~ 272 (533)
...+++|+|..|.|||||.+.+... .......+++. +.. .+... ...++++.++... ....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 3468999999999999999999863 22344444443 111 11111 1112445544321 1112
Q ss_pred cHHHHHHHHHHHhCCceEEEEEeCCCCC-CccccchhhhcccCC-CC-CceEEEEecchHHHh
Q 045152 273 EFESLMKQIQEYITRKKFFLVLDDVWDG-DYKKWNPFFSCLKNG-HH-ESKILITTRDRSVAL 332 (533)
Q Consensus 273 ~~~~l~~~l~~~l~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~-gs~IiiTtR~~~v~~ 332 (533)
.-+...-.+...+-..+-++++|+.-.. +....+.+...+... .. |..||++|.+.....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 2222333345556667788999987432 222333344444322 12 567888888766543
No 227
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.49 E-value=0.0015 Score=58.71 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=28.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhh-ccCCceEEEEeCC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCVSD 249 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~ 249 (533)
+..++.+.|+.|+|||.||+.+.+. .. ......+-++.+.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSE 42 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhc
Confidence 3578899999999999999988863 22 3334555555543
No 228
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.49 E-value=0.018 Score=50.84 Aligned_cols=40 Identities=35% Similarity=0.424 Sum_probs=29.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchh
Q 045152 211 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE 252 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 252 (533)
++.|+|.+|.||||++..+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999988764 222345677877665543
No 229
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.49 E-value=0.013 Score=56.40 Aligned_cols=88 Identities=20% Similarity=0.216 Sum_probs=53.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccC-CceEEEEeCCch-hHHHHHHHHHHHhCCC-------CCCCccHH---
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTF-EEIRVAKAIIEGLGVS-------ASGLSEFE--- 275 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~l~~~il~~l~~~-------~~~~~~~~--- 275 (533)
+-.-++|+|.+|.|||||++.+++. ++.+| +.++++.+.+.. .+.++..++...-... ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4567899999999999999999984 44455 445566565543 4456666655431111 11111111
Q ss_pred --HHHHHHHHHh---CCceEEEEEeCC
Q 045152 276 --SLMKQIQEYI---TRKKFFLVLDDV 297 (533)
Q Consensus 276 --~l~~~l~~~l---~~kr~LlVLDdv 297 (533)
...-.+.+++ .++.+|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1222344444 388999999999
No 230
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.013 Score=52.74 Aligned_cols=119 Identities=17% Similarity=0.139 Sum_probs=59.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC--chhHHHHHHHHHHHhCC--CCCC----------Ccc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD--TFEEIRVAKAIIEGLGV--SASG----------LSE 273 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~l~~~il~~l~~--~~~~----------~~~ 273 (533)
...+++|+|+.|.|||||.+.+..- .......+++.-.. ....... .+.++. .... ...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~---~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRL---YDPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC---CCCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCH
Confidence 3468999999999999999999863 22233444332110 0000110 011110 0000 011
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCCCC-CccccchhhhcccCCCCCceEEEEecchHHHhh
Q 045152 274 FESLMKQIQEYITRKKFFLVLDDVWDG-DYKKWNPFFSCLKNGHHESKILITTRDRSVALQ 333 (533)
Q Consensus 274 ~~~l~~~l~~~l~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~~ 333 (533)
.+...-.+...+..++-+++||+-... +......+...+.....+..||++|.+......
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 111222344455567789999997532 222233344444322235668888888766543
No 231
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.034 Score=53.66 Aligned_cols=80 Identities=19% Similarity=0.286 Sum_probs=47.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhh--ccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhC
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVK--RNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIT 286 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 286 (533)
-++|.++|++|.|||+|.+.+++...++ ..|....-+-++.. .++..-. .+. ..-+..+.+.+.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWF----sES--gKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWF----SES--GKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHH----hhh--hhHHHHHHHHHHHHHh
Confidence 4789999999999999999998864443 34444444433322 2222222 111 1224455666667776
Q ss_pred Cce--EEEEEeCCC
Q 045152 287 RKK--FFLVLDDVW 298 (533)
Q Consensus 287 ~kr--~LlVLDdv~ 298 (533)
++. +++.+|.|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 654 455688883
No 232
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.43 E-value=0.012 Score=53.40 Aligned_cols=119 Identities=18% Similarity=0.117 Sum_probs=59.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCC--C-------------CCCCc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGV--S-------------ASGLS 272 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~--~-------------~~~~~ 272 (533)
...+++|+|+.|.|||||++.+..-. ......+++.-. +.......+-+.++. + .....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 34589999999999999999998631 222333333211 111111111111110 0 00111
Q ss_pred cHHHHHHHHHHHhCCceEEEEEeCCCCC-CccccchhhhcccCCCCCceEEEEecchHHHh
Q 045152 273 EFESLMKQIQEYITRKKFFLVLDDVWDG-DYKKWNPFFSCLKNGHHESKILITTRDRSVAL 332 (533)
Q Consensus 273 ~~~~l~~~l~~~l~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~ 332 (533)
..+...-.+...+-.++-+++||+.... +....+.+...+.....+..||++|.+.....
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 1122233344555667788999998542 22222333333332223667888888876654
No 233
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.43 E-value=0.00044 Score=65.47 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=35.5
Q ss_pred cCCCCCCCcceEEeccCCCCCCCC--cCCCCCCCcceeeccCCch
Q 045152 465 EDHIFLPRLSSLRIEYCPKLKLLP--DSLLQITTLKELGMEGSPL 507 (533)
Q Consensus 465 ~~~~~l~~L~~L~l~~C~~l~~lP--~~~~~l~~L~~L~~~~c~~ 507 (533)
..+++|-+|.+|++++ .++..+- .+|++|++|++|.+.++|.
T Consensus 368 SGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 368 SGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCc
Confidence 3678889999999988 7887776 4899999999999999984
No 234
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.42 E-value=0.014 Score=57.65 Aligned_cols=85 Identities=20% Similarity=0.220 Sum_probs=54.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCC-----CCCccHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSA-----SGLSEFESLMKQI 281 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~-----~~~~~~~~l~~~l 281 (533)
+.-+++-|.|++|+||||||.++... ....-..++||...+.++.. .+++++... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 56789999999999999999877653 23334567899877666553 344444321 1122345555555
Q ss_pred HHHhC-CceEEEEEeCCC
Q 045152 282 QEYIT-RKKFFLVLDDVW 298 (533)
Q Consensus 282 ~~~l~-~kr~LlVLDdv~ 298 (533)
...++ +..-++|+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456789999983
No 235
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.014 Score=60.83 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=61.8
Q ss_pred ceeechhhHHHHHHHHhCCCcc------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSE------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRV 256 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l 256 (533)
++=|.+....++.+++..-... +-..++-|.++|++|.|||.||+.+.+...+ -|+.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v-------Pf~~isAp------ 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV-------PFLSISAP------ 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC-------ceEeecch------
Confidence 4668888888887776432210 1235678899999999999999999985322 23444432
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCC
Q 045152 257 AKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWD 299 (533)
Q Consensus 257 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~ 299 (533)
+|+..+.++ +.+.+.+.+.+.-..-++++++|+++.
T Consensus 258 --eivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 --EIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred --hhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeecccc
Confidence 233333222 233444445555566899999999965
No 236
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.36 E-value=0.02 Score=57.18 Aligned_cols=59 Identities=24% Similarity=0.265 Sum_probs=42.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhh----ccCCceEEEEeCCchhHHHHHHHHHHHhCC
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSDTFEEIRVAKAIIEGLGV 266 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 266 (533)
...+++-|+|.+|+|||+|+..++-..... ..-..++||+....|+..++.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 456788899999999999997775322221 1124789999999888887655 5555554
No 237
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.36 E-value=0.00087 Score=72.60 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=64.1
Q ss_pred cceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcceeec
Q 045152 423 LSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKELGM 502 (533)
Q Consensus 423 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~L~~ 502 (533)
|+.|+++. ......|-.+..+.+|+.|+++ |..+.+.| .+++.+.+|++|+|.+ ..+..+|.++..+++|+.|++
T Consensus 47 L~~l~lsn-n~~~~fp~~it~l~~L~~ln~s-~n~i~~vp--~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSN-NQISSFPIQITLLSHLRQLNLS-RNYIRSVP--SSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eEEeeccc-cccccCCchhhhHHHHhhcccc-hhhHhhCc--hhhhhhhcchhheecc-chhhcCchhHHhhhccccccc
Confidence 77777776 4556667778888888899888 67788888 6888899999998854 899999999999999999998
Q ss_pred cCC
Q 045152 503 EGS 505 (533)
Q Consensus 503 ~~c 505 (533)
+.+
T Consensus 122 S~N 124 (1081)
T KOG0618|consen 122 SFN 124 (1081)
T ss_pred chh
Confidence 755
No 238
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.36 E-value=0.0052 Score=56.75 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=58.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHH---HHHHHhCCCCCCCccHHHHHHHHHHHhC
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK---AIIEGLGVSASGLSEFESLMKQIQEYIT 286 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~---~il~~l~~~~~~~~~~~~l~~~l~~~l~ 286 (533)
..|.|+|+.|.||||++..+... +..+....++.- .++.. -... .+..+-.. ..+.......++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~E--~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPIE--FVHESKRSLINQREV----GLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCcc--ccccCccceeeeccc----CCCccCHHHHHHHHhc
Confidence 47899999999999999887653 322333344432 22211 0000 01111000 0111234456667777
Q ss_pred CceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHHHh
Q 045152 287 RKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSVAL 332 (533)
Q Consensus 287 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~ 332 (533)
..+=.+++|++.+. +....... ....|..++.|+...++..
T Consensus 73 ~~pd~ii~gEird~--e~~~~~l~---~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 73 QDPDVILVGEMRDL--ETIRLALT---AAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CCcCEEEEcCCCCH--HHHHHHHH---HHHcCCEEEEEecCCcHHH
Confidence 66779999999543 33333222 2234566777777665543
No 239
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.35 E-value=0.0041 Score=57.28 Aligned_cols=106 Identities=20% Similarity=0.218 Sum_probs=51.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh----
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI---- 285 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l---- 285 (533)
+++.|.|++|.||||++..+... +... ...+.+.....--...+.+. .+... ..+..........-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~L~~~----~~~~a---~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKELREK----TGIEA---QTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHHHHHH----HTS-E---EEHHHHTTEECCEECCSS
T ss_pred eEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHHHHHh----hCcch---hhHHHHHhcCCccccccc
Confidence 57888999999999999888763 2222 23444443433333333332 22110 11110000000000
Q ss_pred --CCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecc
Q 045152 286 --TRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRD 327 (533)
Q Consensus 286 --~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~ 327 (533)
..++-++|+|++.-.+...+..+....+. .|+++|+.--.
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 12345999999976655556666555544 46788776543
No 240
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.35 E-value=0.0083 Score=59.99 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=37.4
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..++|+...+.++.+.+.... .....|.|+|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHH
Confidence 358999999988888875543 2345788999999999999999985
No 241
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.34 E-value=0.02 Score=54.22 Aligned_cols=126 Identities=19% Similarity=0.153 Sum_probs=71.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC-----chhHHHHHHHHHHHhCCCC------CCC-ccHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-----TFEEIRVAKAIIEGLGVSA------SGL-SEFE 275 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~l~~~il~~l~~~~------~~~-~~~~ 275 (533)
+..+++|||..|.|||||++.+.. ....-...+++.-.+ .....+-..++++.++... +.. ...+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 456899999999999999999985 333333444443211 2223345566677766432 111 2222
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCCCc-cccchhhhccc--CCCCCceEEEEecchHHHhhhCC
Q 045152 276 SLMKQIQEYITRKKFFLVLDDVWDGDY-KKWNPFFSCLK--NGHHESKILITTRDRSVALQLGS 336 (533)
Q Consensus 276 ~l~~~l~~~l~~kr~LlVLDdv~~~~~-~~~~~l~~~l~--~~~~gs~IiiTtR~~~v~~~~~~ 336 (533)
...-.+...+.-++-++|.|+.-..-. ..-.++...+. ....|-..+..|-+-.+...+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 233345566778889999998733211 11122222222 12335667778888777766543
No 242
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.32 E-value=0.026 Score=56.01 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=40.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEEEeCCchhHHHHHHHHHHHhCC
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLGV 266 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 266 (533)
....++.|.|.+|+|||||+..++....... .-..++|++....++..++ .++.+.++.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 4578999999999999999988764222211 1135799998887777663 334555443
No 243
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.31 E-value=0.016 Score=52.19 Aligned_cols=115 Identities=17% Similarity=0.252 Sum_probs=60.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcch-hh--hc---cCC--ceEEEEeCCchhHHHHHHHHHHHhCCCCC----C---Cc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNND-EV--KR---NFE--KVIWVCVSDTFEEIRVAKAIIEGLGVSAS----G---LS 272 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~-~~--~~---~F~--~~~wv~vs~~~~~~~l~~~il~~l~~~~~----~---~~ 272 (533)
...+++|+|+.|+|||||.+.+..+. .+ .. .|. ...|+ .+ .+.++.++.... . ..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 44689999999999999999885321 11 11 111 12232 21 345566654321 1 11
Q ss_pred cHHHHHHHHHHHhCCc--eEEEEEeCCCCC-CccccchhhhcccCC-CCCceEEEEecchHHHh
Q 045152 273 EFESLMKQIQEYITRK--KFFLVLDDVWDG-DYKKWNPFFSCLKNG-HHESKILITTRDRSVAL 332 (533)
Q Consensus 273 ~~~~l~~~l~~~l~~k--r~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~gs~IiiTtR~~~v~~ 332 (533)
.-....-.+...+-.+ +-++++|+.-.. +......+...+... ..|..||++|.+.....
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 1222233344444455 678888987432 222233344433321 24667888888876653
No 244
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.31 E-value=0.012 Score=65.14 Aligned_cols=134 Identities=17% Similarity=0.214 Sum_probs=72.2
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
..++|+...+..+.+.+.... .....|.|+|..|+|||++|+.+++... + .-...+.+++..-. ...+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~-r-~~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSG-R-NNRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcC-C-CCCCeEEEecccCC-hhHhhhhhc
Confidence 368999998888877765332 2345789999999999999999987421 1 11233444444321 111111121
Q ss_pred HHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCC-----------CCCceEEEEecc
Q 045152 262 EGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNG-----------HHESKILITTRD 327 (533)
Q Consensus 262 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IiiTtR~ 327 (533)
....+...... ......+. ....-.|+||||..........+...+..+ ..+.|||.||..
T Consensus 449 g~~~~~~~g~~--~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 449 GHERGAFTGAS--AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred Ccccccccccc--cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 11111000000 00111121 122346899999776555555566555432 134588888764
No 245
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.30 E-value=0.021 Score=52.51 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=44.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCC---ceEEEEeCCchhHHHHHHHHHHH---hCCCCCCCccHHHHHHHHHHH
Q 045152 211 VISLVGLGGIGKTTLAQLAYNNDEVKRNFE---KVIWVCVSDTFEEIRVAKAIIEG---LGVSASGLSEFESLMKQIQEY 284 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~---~~~wv~vs~~~~~~~l~~~il~~---l~~~~~~~~~~~~l~~~l~~~ 284 (533)
||+|.|++|+||||+|+.+..... +.... ....++....+........--.. .....+...+.+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN-KRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-TCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-ccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHH
Confidence 699999999999999999986311 12222 23444433333222222221111 111223345677777778777
Q ss_pred hCCceEEE
Q 045152 285 ITRKKFFL 292 (533)
Q Consensus 285 l~~kr~Ll 292 (533)
..++..-+
T Consensus 80 ~~g~~i~~ 87 (194)
T PF00485_consen 80 KNGGSIEI 87 (194)
T ss_dssp HTTSCEEE
T ss_pred hCCCcccc
Confidence 66666444
No 246
>PRK09354 recA recombinase A; Provisional
Probab=96.27 E-value=0.02 Score=57.00 Aligned_cols=85 Identities=19% Similarity=0.220 Sum_probs=56.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCC-----CCCccHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSA-----SGLSEFESLMKQI 281 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~-----~~~~~~~~l~~~l 281 (533)
+.-+++-|+|++|+||||||.++... ....-..++||.....++.. .++.++... ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 56789999999999999999877653 33345678899887777653 344444321 1122345555555
Q ss_pred HHHhC-CceEEEEEeCCC
Q 045152 282 QEYIT-RKKFFLVLDDVW 298 (533)
Q Consensus 282 ~~~l~-~kr~LlVLDdv~ 298 (533)
...++ +..-++|+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55554 356689999983
No 247
>PHA02244 ATPase-like protein
Probab=96.25 E-value=0.015 Score=57.93 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.|.|+|++|+|||+||+.+...
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999863
No 248
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.25 E-value=0.046 Score=50.91 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCCC-CCccccchhhhcccC--CCCCceEEEEecchHHHhhhC
Q 045152 274 FESLMKQIQEYITRKKFFLVLDDVWD-GDYKKWNPFFSCLKN--GHHESKILITTRDRSVALQLG 335 (533)
Q Consensus 274 ~~~l~~~l~~~l~~kr~LlVLDdv~~-~~~~~~~~l~~~l~~--~~~gs~IiiTtR~~~v~~~~~ 335 (533)
-++..-.+.+.+-..+-+|+.|+--. -+...-+.+...+.. ...|..||+.|.++.++..+.
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 34445556677778888889997521 111222334444432 234778999999999998543
No 249
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.22 E-value=0.03 Score=48.73 Aligned_cols=106 Identities=22% Similarity=0.220 Sum_probs=56.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITR 287 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 287 (533)
...+++|+|..|.|||||++.+.... ......+|+.-.. .+.--. +....+...-.+...+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~-~lS~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFE-QLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEc-cCCHHHHHHHHHHHHHhc
Confidence 34689999999999999999998632 2233444432100 000000 011112222334445556
Q ss_pred ceEEEEEeCCCCC-CccccchhhhcccCCCCCceEEEEecchHHHh
Q 045152 288 KKFFLVLDDVWDG-DYKKWNPFFSCLKNGHHESKILITTRDRSVAL 332 (533)
Q Consensus 288 kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~ 332 (533)
++-++++|+.-.. +......+...+... +..||++|.+.....
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 6678899987432 222333444444332 245888887765544
No 250
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.025 Score=59.17 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=46.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC-chhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIT 286 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 286 (533)
...+|+|+|++|+||||++..+......+.....+..++... .....+.+....+.++.......+...+...+.. +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 457999999999999999988765311111123445554322 1112222333333333322222233344444433 33
Q ss_pred CceEEEEEeCCCC
Q 045152 287 RKKFFLVLDDVWD 299 (533)
Q Consensus 287 ~kr~LlVLDdv~~ 299 (533)
..=+|++|..-.
T Consensus 428 -~~DLVLIDTaG~ 439 (559)
T PRK12727 428 -DYKLVLIDTAGM 439 (559)
T ss_pred -cCCEEEecCCCc
Confidence 345788888743
No 251
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.21 E-value=0.025 Score=49.81 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=60.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC---chhHHHHHHHHHHHh-----CCC----CCCC-cc---
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD---TFEEIRVAKAIIEGL-----GVS----ASGL-SE--- 273 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~l~~~il~~l-----~~~----~~~~-~~--- 273 (533)
..|-|++..|.||||+|....-. .....+ .+.++.+-. ......+++.+ ..+ +.. ..+. .+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r-a~~~g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR-ALGHGY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HHHCCC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46788888899999999655532 122222 333433222 23333333333 011 000 0000 11
Q ss_pred HHHHHHHHHHHhC-CceEEEEEeCCCCC---CccccchhhhcccCCCCCceEEEEecch
Q 045152 274 FESLMKQIQEYIT-RKKFFLVLDDVWDG---DYKKWNPFFSCLKNGHHESKILITTRDR 328 (533)
Q Consensus 274 ~~~l~~~l~~~l~-~kr~LlVLDdv~~~---~~~~~~~l~~~l~~~~~gs~IiiTtR~~ 328 (533)
........++.+. ++-=|+|||++-.. ..-..+.+...+.....+.-+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122233334443 35569999998432 2233455666666666677899999984
No 252
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.02 Score=57.79 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=49.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC-chhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIT 286 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 286 (533)
...++.++|+.|+||||++..+......+.....+..++... .....+-++...+.++.+.....+..++...+. .+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hhc
Confidence 346899999999999999988876321121223455555322 123344455555555544322222222333333 334
Q ss_pred CceEEEEEeCCCCC
Q 045152 287 RKKFFLVLDDVWDG 300 (533)
Q Consensus 287 ~kr~LlVLDdv~~~ 300 (533)
++ -++++|..-..
T Consensus 215 ~~-DlVLIDTaG~~ 227 (374)
T PRK14722 215 NK-HMVLIDTIGMS 227 (374)
T ss_pred CC-CEEEEcCCCCC
Confidence 44 45669988543
No 253
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.051 Score=55.87 Aligned_cols=51 Identities=31% Similarity=0.247 Sum_probs=36.8
Q ss_pred ceeechh---hHHHHHHHHhCCCcc---CCCCeEEEEEEcCCCChHHHHHHHHhcch
Q 045152 183 EVCGRVE---EKNELLSKLLCESSE---QQKGLHVISLVGLGGIGKTTLAQLAYNND 233 (533)
Q Consensus 183 ~~vGR~~---e~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 233 (533)
++-|-++ |+++|+++|.+...- +..-++-|.++|++|.|||-||++|.-..
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4566654 678888888554311 12346778999999999999999998753
No 254
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.034 Score=56.55 Aligned_cols=91 Identities=15% Similarity=0.228 Sum_probs=52.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhh--ccCCceEEEEeCCc-hhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVK--RNFEKVIWVCVSDT-FEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEY 284 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~vs~~-~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~ 284 (533)
...+|.++|+.|+||||.+..+....... .+-..+..+++... .....-++...+.++.+-........+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 45799999999999999998877532221 11224455554431 1223335555555655433333445555544443
Q ss_pred hCCceEEEEEeCCCCC
Q 045152 285 ITRKKFFLVLDDVWDG 300 (533)
Q Consensus 285 l~~kr~LlVLDdv~~~ 300 (533)
.+.-++++|.....
T Consensus 253 --~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 --KDFDLVLVDTIGKS 266 (388)
T ss_pred --CCCCEEEEcCCCCC
Confidence 34568899988554
No 255
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.17 E-value=0.023 Score=53.48 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=39.5
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEe---------CCchhHHH--HHHHHHHHhCCCCC
Q 045152 206 QKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV---------SDTFEEIR--VAKAIIEGLGVSAS 269 (533)
Q Consensus 206 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---------s~~~~~~~--l~~~il~~l~~~~~ 269 (533)
...+.+|.++||+|.||||..|.++.+. ...+..-.-|+. ..+.++.+ -+++.+++.+..+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl--~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHL--HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHH--hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 3567788999999999999999998753 333333333332 22334433 26677887765543
No 256
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.15 E-value=0.009 Score=58.52 Aligned_cols=136 Identities=24% Similarity=0.272 Sum_probs=71.5
Q ss_pred eeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc-hhhhccCCceEE----EEeCCch-------
Q 045152 184 VCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN-DEVKRNFEKVIW----VCVSDTF------- 251 (533)
Q Consensus 184 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~-~~~~~~F~~~~w----v~vs~~~------- 251 (533)
+-+|..+..--++.|+. +.+..|.+.|.+|.|||-||-+..-. ...+..|..++- +.+.++.
T Consensus 226 i~prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 34577777777777764 46889999999999999999443211 122333432221 1122211
Q ss_pred --hHHHHHHHHHHHhCCCC-CCCccHHHHHHHHH---------HHhCCc---eEEEEEeCCCCCCccccchhhhcccCCC
Q 045152 252 --EEIRVAKAIIEGLGVSA-SGLSEFESLMKQIQ---------EYITRK---KFFLVLDDVWDGDYKKWNPFFSCLKNGH 316 (533)
Q Consensus 252 --~~~~l~~~il~~l~~~~-~~~~~~~~l~~~l~---------~~l~~k---r~LlVLDdv~~~~~~~~~~l~~~l~~~~ 316 (533)
.+.-..+.|...+..-. .+......+...+. .+++++ .-++|+|.+.+-.. ..+...+...+
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR~G 376 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTRAG 376 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHhcc
Confidence 12223333433332110 01011111111111 223443 45899999965433 33455566778
Q ss_pred CCceEEEEecch
Q 045152 317 HESKILITTRDR 328 (533)
Q Consensus 317 ~gs~IiiTtR~~ 328 (533)
.||||+.|--..
T Consensus 377 ~GsKIVl~gd~a 388 (436)
T COG1875 377 EGSKIVLTGDPA 388 (436)
T ss_pred CCCEEEEcCCHH
Confidence 899999887544
No 257
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.15 E-value=0.0062 Score=67.33 Aligned_cols=74 Identities=20% Similarity=0.366 Sum_probs=40.6
Q ss_pred cccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCccee
Q 045152 421 PCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKEL 500 (533)
Q Consensus 421 p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~L 500 (533)
+.|+.|.++.| .+..+|..+. .+|+.|+++ |++|..+| ..+. ++|++|++++| +|+.+|..+. ++|+.|
T Consensus 241 ~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls-~N~L~~LP--~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L 309 (754)
T PRK15370 241 DTIQEMELSIN-RITELPERLP--SALQSLDLF-HNKISCLP--ENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHL 309 (754)
T ss_pred ccccEEECcCC-ccCcCChhHh--CCCCEEECc-CCccCccc--cccC--CCCcEEECCCC-ccccCcccch--hhHHHH
Confidence 35555655553 3445555443 356666666 34466666 3332 46666666664 5666665443 356666
Q ss_pred eccCC
Q 045152 501 GMEGS 505 (533)
Q Consensus 501 ~~~~c 505 (533)
++++|
T Consensus 310 ~Ls~N 314 (754)
T PRK15370 310 NVQSN 314 (754)
T ss_pred HhcCC
Confidence 66655
No 258
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.13 E-value=0.036 Score=55.45 Aligned_cols=59 Identities=20% Similarity=0.243 Sum_probs=41.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEEEeCCchhHHHHHHHHHHHhCC
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLGV 266 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 266 (533)
....++-|.|.+|+|||+|+..++-...... .-..++||+....|+..++. +|++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 4577888999999999999977764322111 11368999999988887764 45666554
No 259
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.13 E-value=0.037 Score=49.48 Aligned_cols=116 Identities=16% Similarity=0.046 Sum_probs=59.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEE-------EeCCchhH--HHHHHHHHHHhCCCCCCCccHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV-------CVSDTFEE--IRVAKAIIEGLGVSASGLSEFESLM 278 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-------~vs~~~~~--~~l~~~il~~l~~~~~~~~~~~~l~ 278 (533)
.-.+++|+|+.|.|||||++.+..-.. .....+++ .+.+.... ..+...+.-. .......-+...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~r 99 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQR 99 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHH
Confidence 345899999999999999999986421 11222211 12222211 1222222110 112222223333
Q ss_pred HHHHHHhCCceEEEEEeCCCCC-CccccchhhhcccCCCCCceEEEEecchHHH
Q 045152 279 KQIQEYITRKKFFLVLDDVWDG-DYKKWNPFFSCLKNGHHESKILITTRDRSVA 331 (533)
Q Consensus 279 ~~l~~~l~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~ 331 (533)
-.+...+-.++-++++|+--.. +......+...+... +..||++|.+....
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 3445555567778899987432 222233343434332 35688888876654
No 260
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.12 E-value=0.025 Score=51.06 Aligned_cols=104 Identities=19% Similarity=0.106 Sum_probs=55.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE------eCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC------VSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQI 281 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l 281 (533)
.-.+++|+|+.|.|||||.+.+..- .......+++. +.+... ...-+...-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl---~~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~l 82 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ---LIPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAI 82 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC---CCCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHH
Confidence 3458999999999999999998753 12223333322 111110 11122233344
Q ss_pred HHHhCCceEEEEEeCCCCC-CccccchhhhcccCC-CC-CceEEEEecchHHHh
Q 045152 282 QEYITRKKFFLVLDDVWDG-DYKKWNPFFSCLKNG-HH-ESKILITTRDRSVAL 332 (533)
Q Consensus 282 ~~~l~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~-gs~IiiTtR~~~v~~ 332 (533)
...+..++-++++|+.-.. +......+...+... .. +..||++|.+.....
T Consensus 83 aral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 4555567778999987432 212222233333221 12 255777887765544
No 261
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.054 Score=57.63 Aligned_cols=133 Identities=19% Similarity=0.098 Sum_probs=71.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc--hhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT--FEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI 285 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l 285 (533)
...-|.|.|+.|+|||+||+.+++... +.+.-.+.+++++.- -..+.+++.+ ...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHH
Confidence 345788999999999999999997533 444444555554432 1122222222 22233445
Q ss_pred CCceEEEEEeCCCC------CCccccchh----hhccc-----CCCCCce--EEEEecchHHHh-hh----CCCCeeeCC
Q 045152 286 TRKKFFLVLDDVWD------GDYKKWNPF----FSCLK-----NGHHESK--ILITTRDRSVAL-QL----GSIDIIPVK 343 (533)
Q Consensus 286 ~~kr~LlVLDdv~~------~~~~~~~~l----~~~l~-----~~~~gs~--IiiTtR~~~v~~-~~----~~~~~~~l~ 343 (533)
...+-+|||||++- .+..+|... ..++. ....+.+ +|.|.....-.. .+ -......++
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 56788999999943 111233321 11111 1233444 344444322111 11 113467888
Q ss_pred CCChHhhHHHHHHhh
Q 045152 344 ELAEEECWSLLERLA 358 (533)
Q Consensus 344 ~L~~~~~~~Lf~~~a 358 (533)
.+...+--++++...
T Consensus 572 ap~~~~R~~IL~~~~ 586 (952)
T KOG0735|consen 572 APAVTRRKEILTTIF 586 (952)
T ss_pred CcchhHHHHHHHHHH
Confidence 888887777766543
No 262
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.12 E-value=0.026 Score=53.56 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=54.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCC------------------
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSA------------------ 268 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~------------------ 268 (533)
+..+++.|+|.+|+|||+|+.++... ..+ +=..++|++..+.. .++.+++ ++++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~~--~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENTS--KSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCCH--HHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 56789999999999999999887542 122 34578888876543 3444443 2232110
Q ss_pred --CCCccHHHHHHHHHHHhCC-ceEEEEEeCCC
Q 045152 269 --SGLSEFESLMKQIQEYITR-KKFFLVLDDVW 298 (533)
Q Consensus 269 --~~~~~~~~l~~~l~~~l~~-kr~LlVLDdv~ 298 (533)
......+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112235566666666653 55689999984
No 263
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.11 E-value=0.022 Score=53.40 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=38.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhc-cC-CceEEEEeCCchhHHHHHHHHHHHhC-CCCCCCccHHHHHHHHHHHhC
Q 045152 211 VISLVGLGGIGKTTLAQLAYNNDEVKR-NF-EKVIWVCVSDTFEEIRVAKAIIEGLG-VSASGLSEFESLMKQIQEYIT 286 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F-~~~~wv~vs~~~~~~~l~~~il~~l~-~~~~~~~~~~~l~~~l~~~l~ 286 (533)
+|+|.|..|+||||||+.+... ... .. ..+..++...-+.......... .+. ...+...+.+.+...+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~--l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL--LSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH--HhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 5899999999999999988863 221 01 2344555444332222222211 111 111234455666666655554
No 264
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.09 E-value=0.034 Score=57.56 Aligned_cols=89 Identities=18% Similarity=0.198 Sum_probs=47.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCch-hHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCC
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITR 287 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 287 (533)
..++.++|++|+||||++..+.........-..+..|+....- ...+-+....+.++.+.....+..++...+.. +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-
Confidence 4699999999999999997775422111223356666654321 12222333334344332222333444444543 22
Q ss_pred ceEEEEEeCCCC
Q 045152 288 KKFFLVLDDVWD 299 (533)
Q Consensus 288 kr~LlVLDdv~~ 299 (533)
..=++++|..-.
T Consensus 299 ~~DlVlIDt~G~ 310 (424)
T PRK05703 299 DCDVILIDTAGR 310 (424)
T ss_pred CCCEEEEeCCCC
Confidence 346788997744
No 265
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.08 E-value=0.044 Score=54.45 Aligned_cols=58 Identities=21% Similarity=0.282 Sum_probs=40.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEEEeCCchhHHHHHHHHHHHhC
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLG 265 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~ 265 (533)
....++-|+|++|+|||+++.+++....... .-..++||+....|+..++.+ +++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 4578999999999999999977764322210 113789999988888776543 444444
No 266
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.07 E-value=0.052 Score=54.14 Aligned_cols=58 Identities=22% Similarity=0.337 Sum_probs=40.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhcc----CCceEEEEeCCchhHHHHHHHHHHHhC
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFEEIRVAKAIIEGLG 265 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~l~~~il~~l~ 265 (533)
+...++-|+|++|+|||+++.++.-....... =..++||+....++...+.+ +++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 45788999999999999999777643211111 14789999988888776654 344443
No 267
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.06 E-value=0.015 Score=51.89 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=61.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC--chhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD--TFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI 285 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l 285 (533)
...+++|+|+.|.|||||.+.+... .......+++.-.. ..+..+.. .+.++.- .+....+...-.+...+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~-~qLS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDAR---RAGIAMV-YQLSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHH---hcCeEEE-EecCHHHHHHHHHHHHH
Confidence 3458999999999999999999863 23344555543111 01111111 1111110 01122223333444555
Q ss_pred CCceEEEEEeCCCCC-CccccchhhhcccCC-CCCceEEEEecchHHHh
Q 045152 286 TRKKFFLVLDDVWDG-DYKKWNPFFSCLKNG-HHESKILITTRDRSVAL 332 (533)
Q Consensus 286 ~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~gs~IiiTtR~~~v~~ 332 (533)
-.++-++++|+.-.. +......+...+... ..|..||++|.+.....
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 667788899987432 222333344444321 23667888888865443
No 268
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.021 Score=58.05 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...++.++|++|+||||++..+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999988875
No 269
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.058 Score=56.97 Aligned_cols=157 Identities=17% Similarity=0.087 Sum_probs=80.1
Q ss_pred ceeechhhHHHHHHHHhCCCcc-------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSE-------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
++=|-++-+.+|.+...-.-.. +-..++-|..+|++|.|||++|+.+.+. ....| +.++.+-
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgpE---- 503 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGPE---- 503 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCHH----
Confidence 3445666666666544322110 1246778999999999999999999983 33344 3333221
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc-------c----ccchhhhcccCCCC--CceEE
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDY-------K----KWNPFFSCLKNGHH--ESKIL 322 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~-------~----~~~~l~~~l~~~~~--gs~Ii 322 (533)
++....+ .+...+...+.+.-.-.+.++.||.++.... . ....|+.-+..... +--||
T Consensus 504 ----L~sk~vG-----eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~Vi 574 (693)
T KOG0730|consen 504 ----LFSKYVG-----ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVI 574 (693)
T ss_pred ----HHHHhcC-----chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEE
Confidence 1111111 1112222222222233558888888853210 0 01112222221122 22233
Q ss_pred EEecchHHHh--hhC---CCCeeeCCCCChHhhHHHHHHhhc
Q 045152 323 ITTRDRSVAL--QLG---SIDIIPVKELAEEECWSLLERLAF 359 (533)
Q Consensus 323 iTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~Lf~~~a~ 359 (533)
-.|..++... .+. .+..+.++.-+.+.-.++|+.++-
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 3344333322 122 267788888888888999998874
No 270
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.034 Score=53.69 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=58.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhC---C-CCCCCccHHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLG---V-SASGLSEFESLMKQIQ 282 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~---~-~~~~~~~~~~l~~~l~ 282 (533)
+.-+++=|+|+.|.||||+|.+++-. .+..-..++||+.-..+++..+.+-....+. . .+.....-..+...+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 56788889999999999999777653 4444558999999998888765543333121 1 1122222334444444
Q ss_pred HHhCCceEEEEEeCC
Q 045152 283 EYITRKKFFLVLDDV 297 (533)
Q Consensus 283 ~~l~~kr~LlVLDdv 297 (533)
.....+--|+|+|.+
T Consensus 136 ~~~~~~i~LvVVDSv 150 (279)
T COG0468 136 RSGAEKIDLLVVDSV 150 (279)
T ss_pred HhccCCCCEEEEecC
Confidence 444445679999998
No 271
>PTZ00035 Rad51 protein; Provisional
Probab=96.01 E-value=0.051 Score=54.44 Aligned_cols=59 Identities=24% Similarity=0.281 Sum_probs=39.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhh----ccCCceEEEEeCCchhHHHHHHHHHHHhCC
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSDTFEEIRVAKAIIEGLGV 266 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 266 (533)
....++.|+|.+|+|||||+..+.-..... ..-..++||+....++..++ .++.+.++.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 467899999999999999998776432211 11235679988777776664 334555443
No 272
>PRK14974 cell division protein FtsY; Provisional
Probab=96.01 E-value=0.055 Score=53.98 Aligned_cols=91 Identities=25% Similarity=0.215 Sum_probs=48.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCch--hHHHHHHHHHHHhCCCCC---CCccHHH-HHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF--EEIRVAKAIIEGLGVSAS---GLSEFES-LMKQ 280 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~l~~~il~~l~~~~~---~~~~~~~-l~~~ 280 (533)
.++.+|.++|++|+||||++..+.... ....+ .++.++ .+.+ ...+-++...+.++.+.. ...+... ....
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l-~~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL-KKNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH-HHcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 347899999999999999887777532 12223 233443 2222 233445556666654321 1122222 2233
Q ss_pred HHHHhCCceEEEEEeCCCCC
Q 045152 281 IQEYITRKKFFLVLDDVWDG 300 (533)
Q Consensus 281 l~~~l~~kr~LlVLDdv~~~ 300 (533)
+........=++++|-....
T Consensus 215 i~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHHhCCCCEEEEECCCcc
Confidence 33222222338999988543
No 273
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.00 E-value=0.0099 Score=57.65 Aligned_cols=95 Identities=27% Similarity=0.277 Sum_probs=49.5
Q ss_pred HHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHH-hCCCCCC
Q 045152 192 NELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEG-LGVSASG 270 (533)
Q Consensus 192 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~-l~~~~~~ 270 (533)
..+++.+... -+-+.++|+.|+|||++++....... ...| ...-++.+...+...++ .+++. +......
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQ-KIIESKLEKRRGR 92 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHH-HCCCTTECECTTE
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCCC
Confidence 4556666533 35679999999999999988875311 1111 13345556554444433 33322 1111000
Q ss_pred CccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccc
Q 045152 271 LSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWN 306 (533)
Q Consensus 271 ~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~ 306 (533)
. ..--.+|+.++.+||+.-+..+.|.
T Consensus 93 ~----------~gP~~~k~lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 93 V----------YGPPGGKKLVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp E----------EEEESSSEEEEEEETTT-S---TTS
T ss_pred C----------CCCCCCcEEEEEecccCCCCCCCCC
Confidence 0 0001468899999999655444444
No 274
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.98 E-value=0.0067 Score=54.36 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=42.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCC---ccHHHHHHHHHHHhCC
Q 045152 211 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGL---SEFESLMKQIQEYITR 287 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~---~~~~~l~~~l~~~l~~ 287 (533)
++.|.|.+|.||||+|..+.... . ...+++.....++ .+..+.|..........- .....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~---~~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--G---LQVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--C---CCcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 68999999999999998887531 1 1234554444433 345555544332221111 1112234444443332
Q ss_pred ceEEEEEeCC
Q 045152 288 KKFFLVLDDV 297 (533)
Q Consensus 288 kr~LlVLDdv 297 (533)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 236888887
No 275
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.0074 Score=52.24 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.--|.|.||+|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 456899999999999999999863
No 276
>PRK07667 uridine kinase; Provisional
Probab=95.95 E-value=0.0099 Score=54.62 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 191 KNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 191 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.+.|.+.+.... +...+|+|-|.+|.||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666664433 44589999999999999999999863
No 277
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.95 E-value=0.041 Score=53.64 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=43.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccC--CceEEEEeCCchhHHHHHHHHHHHh-CCCCCCCccHHHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEEIRVAKAIIEGL-GVSASGLSEFESLMKQIQE 283 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~l~~~il~~l-~~~~~~~~~~~~l~~~l~~ 283 (533)
..+.+|+|.|..|+||||+|+.+..- ..... ..+..++...-+.........- .+ ....+...+...+...+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l--l~~~~~~g~V~vi~~D~f~~~~~~l~~~g-~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL--LSRWPEHRKVELITTDGFLHPNQVLKERN-LMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCceEEEecccccccHHHHHHcC-CccccCCChhccHHHHHHHHHH
Confidence 46789999999999999999877541 22111 1344555444332222222110 00 0112334566667777766
Q ss_pred HhCCc
Q 045152 284 YITRK 288 (533)
Q Consensus 284 ~l~~k 288 (533)
...++
T Consensus 137 Lk~g~ 141 (290)
T TIGR00554 137 LKSGK 141 (290)
T ss_pred HHCCC
Confidence 66554
No 278
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.94 E-value=0.0049 Score=52.22 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 045152 212 ISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~ 232 (533)
|.|.|.+|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999864
No 279
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.056 Score=56.51 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=89.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITR 287 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 287 (533)
.+.-|.++|++|.|||-||++|.|. ...+| ++|-.+ + ++...-++ +.......+++.-..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----E----LlNkYVGE-----SErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----E----LLNKYVGE-----SERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----H----HHHHHhhh-----HHHHHHHHHHHhhcC
Confidence 4567899999999999999999994 34444 444433 1 22221111 112233333333456
Q ss_pred ceEEEEEeCCCCC-----Cccccc------hhhhccc--CCCCCceEEEEecchHHHhh--hCC---CCeeeCCCCChHh
Q 045152 288 KKFFLVLDDVWDG-----DYKKWN------PFFSCLK--NGHHESKILITTRDRSVALQ--LGS---IDIIPVKELAEEE 349 (533)
Q Consensus 288 kr~LlVLDdv~~~-----~~~~~~------~l~~~l~--~~~~gs~IiiTtR~~~v~~~--~~~---~~~~~l~~L~~~~ 349 (533)
.+++|.||.++.- +...|. +|+.-+. ....|.-||-.|..+++... +.+ .....+..-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 7999999999541 111221 2222222 12456667777776655432 122 5677788888889
Q ss_pred hHHHHHHhhccCCCc--cccccchHHHHHHHhHhCCCcch
Q 045152 350 CWSLLERLAFFRRSV--DDHEKLEPIGRKIAHKCKGLPLA 387 (533)
Q Consensus 350 ~~~Lf~~~a~~~~~~--~~~~~l~~~~~~I~~~c~GlPLa 387 (533)
-.++++...-. ... ...-++.++++ ..+|.|.-=|
T Consensus 684 R~~ILK~~tkn-~k~pl~~dVdl~eia~--~~~c~gftGA 720 (802)
T KOG0733|consen 684 RVAILKTITKN-TKPPLSSDVDLDEIAR--NTKCEGFTGA 720 (802)
T ss_pred HHHHHHHHhcc-CCCCCCcccCHHHHhh--cccccCCchh
Confidence 88998877631 122 22345555555 3567776543
No 280
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.054 Score=51.29 Aligned_cols=122 Identities=19% Similarity=0.269 Sum_probs=66.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchh-----hh------ccC---CceEEEEe----CCc--hhH---------------
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDE-----VK------RNF---EKVIWVCV----SDT--FEE--------------- 253 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~-----~~------~~F---~~~~wv~v----s~~--~~~--------------- 253 (533)
...++|+|+.|.|||||.+.+..-.. +. ..+ ..+.||.- ... .++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 46899999999999999999975210 10 001 13444421 000 011
Q ss_pred -------HHHHHHHHHHhCCCC-----CCCccHHH-HHHHHHHHhCCceEEEEEeCCCCC-C---ccccchhhhcccCCC
Q 045152 254 -------IRVAKAIIEGLGVSA-----SGLSEFES-LMKQIQEYITRKKFFLVLDDVWDG-D---YKKWNPFFSCLKNGH 316 (533)
Q Consensus 254 -------~~l~~~il~~l~~~~-----~~~~~~~~-l~~~l~~~l~~kr~LlVLDdv~~~-~---~~~~~~l~~~l~~~~ 316 (533)
.+...+.++.++... -...+-.+ ..-.+.+.|..++=|++||.--.. + ....-.+...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 234444555555431 11222233 344566778889999999976332 1 12222333333333
Q ss_pred CCceEEEEecchHHHh
Q 045152 317 HESKILITTRDRSVAL 332 (533)
Q Consensus 317 ~gs~IiiTtR~~~v~~ 332 (533)
|..|+++|-+-....
T Consensus 189 -g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 -GKTVLMVTHDLGLVM 203 (254)
T ss_pred -CCEEEEEeCCcHHhH
Confidence 888999998855443
No 281
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.93 E-value=0.034 Score=52.57 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+...+++|.|+.|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999998886
No 282
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.91 E-value=0.021 Score=60.91 Aligned_cols=135 Identities=15% Similarity=0.193 Sum_probs=74.0
Q ss_pred CCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHH
Q 045152 181 EGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 260 (533)
Q Consensus 181 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 260 (533)
...++|....+.++.+.+.... .....|.|+|..|+|||++|+.+++.. ...-...+.|++..-.+ ..+...+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s--~r~~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAAS--PRADKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhC--CcCCCCeEEEEcccCCh-HHHHHHh
Confidence 4568999999999888886543 345678999999999999999998732 11222345555544321 1111122
Q ss_pred HHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCC-----------CCceEEEEecc
Q 045152 261 IEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGH-----------HESKILITTRD 327 (533)
Q Consensus 261 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IiiTtR~ 327 (533)
+-...+....... .....+ +. .+ .-.|+||++..-.......+...+..+. ...|||.||..
T Consensus 259 fG~~~g~~~ga~~--~~~g~~-~~-a~-gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 259 FGHVKGAFTGAIS--NRSGKF-EL-AD-GGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred cCccccccCCCcc--cCCcch-hh-cC-CCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 1111110000000 000011 11 12 2246899997766555556666554321 24588888764
No 283
>PRK05439 pantothenate kinase; Provisional
Probab=95.91 E-value=0.046 Score=53.77 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=45.3
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHHhcchhhhcc--CCceEEEEeCCchhHHHHHHH--HHHHhCCCCCCCccHHHHHHHH
Q 045152 206 QKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSDTFEEIRVAKA--IIEGLGVSASGLSEFESLMKQI 281 (533)
Q Consensus 206 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~l~~~--il~~l~~~~~~~~~~~~l~~~l 281 (533)
.+..-+|+|.|.+|+||||+|+.+.. ..... ...+.-++..+-+.....+.. ++..-+ .+..-+.+.+...+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg--~Pes~D~~~l~~~L 158 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKG--FPESYDMRALLRFL 158 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhhhccccCC--CcccccHHHHHHHH
Confidence 35678999999999999999988875 22221 123444554443332222221 111111 12334566677777
Q ss_pred HHHhCCce
Q 045152 282 QEYITRKK 289 (533)
Q Consensus 282 ~~~l~~kr 289 (533)
.....++.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 76666654
No 284
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.069 Score=58.01 Aligned_cols=181 Identities=18% Similarity=0.107 Sum_probs=100.2
Q ss_pred ceeechhh---HHHHHHHHhCCCcc---CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHH
Q 045152 183 EVCGRVEE---KNELLSKLLCESSE---QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRV 256 (533)
Q Consensus 183 ~~vGR~~e---~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l 256 (533)
++.|-++- +++++++|.....- +..-++-+.++|++|.|||-||+++.-... +-|++++..-
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGSE----- 379 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGSE----- 379 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechHH-----
Confidence 56777654 55556666433210 123567889999999999999999997433 3345555431
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCCcc---------------ccchhhhcccCCC--CC
Q 045152 257 AKAIIEGLGVSASGLSEFESLMKQIQEYI-TRKKFFLVLDDVWDGDYK---------------KWNPFFSCLKNGH--HE 318 (533)
Q Consensus 257 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVLDdv~~~~~~---------------~~~~l~~~l~~~~--~g 318 (533)
.++-+.+. + ...+..+.... ...+.++.+|+++..... .+.++..-+.... .+
T Consensus 380 ---FvE~~~g~--~----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 380 ---FVEMFVGV--G----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ---HHHHhccc--c----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 11111110 0 11222233332 346788888988542111 1222222222222 22
Q ss_pred ceEEEEecchHHHhh--hC---CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchh
Q 045152 319 SKILITTRDRSVALQ--LG---SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAA 388 (533)
Q Consensus 319 s~IiiTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 388 (533)
--++-+|+..++... +. .+..+.+..-+.....++|.-++-. .....+..++++ |+...-|++=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~---~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRK---KKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhc---cCCCcchhhHHH-HHhcCCCCcHHH
Confidence 333445665555432 11 2677888888888889999988742 222244556666 888888888664
No 285
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.89 E-value=0.0075 Score=56.11 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+...+|+|+|++|+|||||++.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999986
No 286
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.89 E-value=0.074 Score=54.88 Aligned_cols=25 Identities=44% Similarity=0.414 Sum_probs=21.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+.++.++|.+|+||||+|..+..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3468999999999999999877664
No 287
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.87 E-value=0.018 Score=53.03 Aligned_cols=78 Identities=18% Similarity=0.285 Sum_probs=43.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHh--CCCCCCCccHHHHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGL--GVSASGLSEFESLMKQIQEY 284 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l--~~~~~~~~~~~~l~~~l~~~ 284 (533)
..+.+|+|.|.+|.||||+|+.+++. ...+ ...-++...-+...+ ........ .-..+...+.+-+...|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~--~~~~--~~~~I~~D~YYk~~~-~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ--LGVE--KVVVISLDDYYKDQS-HLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH--hCcC--cceEeeccccccchh-hcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45789999999999999999999873 3322 122222211111000 00011111 11223345667777788888
Q ss_pred hCCce
Q 045152 285 ITRKK 289 (533)
Q Consensus 285 l~~kr 289 (533)
+.+++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 288
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.87 E-value=0.0033 Score=35.25 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=14.8
Q ss_pred CcceEEeccCCCCCCCCcCCCC
Q 045152 472 RLSSLRIEYCPKLKLLPDSLLQ 493 (533)
Q Consensus 472 ~L~~L~l~~C~~l~~lP~~~~~ 493 (533)
+|++|+|++| +++.+|+++.+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 5777777777 77777776554
No 289
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.84 E-value=0.016 Score=54.13 Aligned_cols=121 Identities=12% Similarity=0.137 Sum_probs=58.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC---CCccHHHHHHHHHHH-
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS---GLSEFESLMKQIQEY- 284 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~---~~~~~~~l~~~l~~~- 284 (533)
.+++.|+|+.|.|||||.+.+...... .+-...+|.. . .. ...+.++...+..... .......-...+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--S-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--C-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 478999999999999999888642111 1111112211 0 00 0111122222222111 111111112222222
Q ss_pred -hCCceEEEEEeCCCCCCc-cccc----hhhhcccCC-CCCceEEEEecchHHHhhh
Q 045152 285 -ITRKKFFLVLDDVWDGDY-KKWN----PFFSCLKNG-HHESKILITTRDRSVALQL 334 (533)
Q Consensus 285 -l~~kr~LlVLDdv~~~~~-~~~~----~l~~~l~~~-~~gs~IiiTtR~~~v~~~~ 334 (533)
+..++.|++||+.-.... .+.. .+...+... ..+..+|+||.+.......
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 246788999999865321 1111 122223222 2345799999988777654
No 290
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.0011 Score=59.55 Aligned_cols=67 Identities=21% Similarity=0.406 Sum_probs=51.5
Q ss_pred cccccCccceeecccCCCCCCCCCccCCC-CCCCcceEEeccCCCCCCCC-cCCCCCCCcceeeccCCch
Q 045152 440 YLLQTTTLQKLRILQCPSMEELPILEDHI-FLPRLSSLRIEYCPKLKLLP-DSLLQITTLKELGMEGSPL 507 (533)
Q Consensus 440 ~l~~l~~L~~L~l~~~~~l~~lp~~~~~~-~l~~L~~L~l~~C~~l~~lP-~~~~~l~~L~~L~~~~c~~ 507 (533)
++..++.++.|.+.+|.++...-. +.++ -.+||+.|+|++|+++++-- ..+.++++|+.|++.+-|.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L-~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCL-ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HHhccchhhhheeccccchhhHHH-HHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 456678888999999998775332 1222 48999999999999997743 3677899999999988773
No 291
>PRK08233 hypothetical protein; Provisional
Probab=95.83 E-value=0.0073 Score=54.76 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999863
No 292
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.82 E-value=0.05 Score=48.91 Aligned_cols=21 Identities=57% Similarity=0.623 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999988876
No 293
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.82 E-value=0.0076 Score=56.16 Aligned_cols=26 Identities=38% Similarity=0.541 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.+..+|+|.|.+|+|||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999863
No 294
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.80 E-value=0.019 Score=57.10 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..+..++|+|++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999984
No 295
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.021 Score=51.57 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 296
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.79 E-value=0.049 Score=49.09 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...+|.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999864
No 297
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.78 E-value=0.011 Score=58.37 Aligned_cols=51 Identities=25% Similarity=0.335 Sum_probs=43.6
Q ss_pred CCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 181 EGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 181 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...|+|.++.++++++.+.......+..-+++.++|+.|.||||||+.+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999766543456789999999999999999998875
No 298
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.77 E-value=0.068 Score=58.55 Aligned_cols=129 Identities=13% Similarity=0.084 Sum_probs=68.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCce
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKK 289 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 289 (533)
+-|.|+|++|.|||++|+.+... ....| +.++.. ++.. .... .....+...+.......+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~--~~~~f-----~~is~~----~~~~----~~~g-----~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE--AKVPF-----FTISGS----DFVE----MFVG-----VGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--cCCCE-----EEEehH----HhHH----hhhc-----ccHHHHHHHHHHHHhcCC
Confidence 45899999999999999999863 22222 222211 1110 0000 011222333333334567
Q ss_pred EEEEEeCCCCCCc----------cccch----hhhcccC--CCCCceEEEEecchHHHhhh-----CCCCeeeCCCCChH
Q 045152 290 FFLVLDDVWDGDY----------KKWNP----FFSCLKN--GHHESKILITTRDRSVALQL-----GSIDIIPVKELAEE 348 (533)
Q Consensus 290 ~LlVLDdv~~~~~----------~~~~~----l~~~l~~--~~~gs~IiiTtR~~~v~~~~-----~~~~~~~l~~L~~~ 348 (533)
.+|+||+++.... ..+.. +...+.. ...+.-+|.||..++..... .....+.+...+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 8999999955310 11111 1111111 12344555677766543211 12567888888888
Q ss_pred hhHHHHHHhh
Q 045152 349 ECWSLLERLA 358 (533)
Q Consensus 349 ~~~~Lf~~~a 358 (533)
+-.+++..+.
T Consensus 326 ~R~~Il~~~~ 335 (644)
T PRK10733 326 GREQILKVHM 335 (644)
T ss_pred HHHHHHHHHh
Confidence 8888887765
No 299
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.76 E-value=0.074 Score=51.60 Aligned_cols=90 Identities=24% Similarity=0.286 Sum_probs=47.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhH--HHHHHHHHHHhCCCC---CCCccH-HHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE--IRVAKAIIEGLGVSA---SGLSEF-ESLMKQ 280 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~l~~~il~~l~~~~---~~~~~~-~~l~~~ 280 (533)
.+.+++.++|++|+||||++..+... ....-..+.+++.. .+.. .+-+....+..+.+- ....+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 45689999999999999999877653 22222345555543 2222 222333344443221 111122 222333
Q ss_pred HHHHhCCceEEEEEeCCCC
Q 045152 281 IQEYITRKKFFLVLDDVWD 299 (533)
Q Consensus 281 l~~~l~~kr~LlVLDdv~~ 299 (533)
+........-++++|-.-.
T Consensus 147 l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHCCCCEEEEeCCCC
Confidence 4444444456788887743
No 300
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.76 E-value=0.002 Score=66.36 Aligned_cols=68 Identities=32% Similarity=0.519 Sum_probs=42.3
Q ss_pred ccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcceeeccCCch
Q 045152 435 KVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKELGMEGSPL 507 (533)
Q Consensus 435 ~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~L~~~~c~~ 507 (533)
..+|..++.+.+|+.|++. -.++..+| +.++.| .|..|+++ |.++..+|-.+.+++.||+|-+.++|.
T Consensus 179 ~slpsql~~l~slr~l~vr-Rn~l~~lp--~El~~L-pLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 179 QSLPSQLGYLTSLRDLNVR-RNHLEDLP--EELCSL-PLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhchHHhhhHHHHHHHHHh-hhhhhhCC--HHHhCC-ceeeeecc-cCceeecchhhhhhhhheeeeeccCCC
Confidence 3344444444444444443 12244444 444433 46677774 689999999999999999999988874
No 301
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.75 E-value=0.08 Score=50.34 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=33.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 259 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 259 (533)
+..+++.|.|.+|.|||++|.++... .. ..-..++|++... +..++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHH
Confidence 46789999999999999999765432 12 2345788887665 33444444
No 302
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.75 E-value=0.034 Score=50.04 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=58.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC--chhHHHHHHHHHHHhCCCCC--C-------CccHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD--TFEEIRVAKAIIEGLGVSAS--G-------LSEFES 276 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~l~~~il~~l~~~~~--~-------~~~~~~ 276 (533)
...+++|+|+.|.|||||.+.+..- .......+++.-.. ..........+ ..+..... . ....+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGL---LRPTSGRVRLDGADISQWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc---cCCCCCeEEECCEEcccCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHH
Confidence 3458999999999999999999853 22233333332100 00111111110 00000000 0 111122
Q ss_pred HHHHHHHHhCCceEEEEEeCCCCC-CccccchhhhcccC-CCCCceEEEEecchHHHh
Q 045152 277 LMKQIQEYITRKKFFLVLDDVWDG-DYKKWNPFFSCLKN-GHHESKILITTRDRSVAL 332 (533)
Q Consensus 277 l~~~l~~~l~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~IiiTtR~~~v~~ 332 (533)
..-.+...+-.++-+++||+.-.. +......+...+.. ...|..||++|.+.....
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 223344455566678899988432 22222333333322 123667888888876554
No 303
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.73 E-value=0.086 Score=50.20 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+..|+|++|+|||+||..+.-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999977764
No 304
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.71 E-value=0.016 Score=50.79 Aligned_cols=36 Identities=39% Similarity=0.296 Sum_probs=26.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 246 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 246 (533)
..+|.|.|.+|.||||||+.+.. +....-..++++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 46899999999999999999987 3444444555554
No 305
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.70 E-value=0.066 Score=55.36 Aligned_cols=88 Identities=26% Similarity=0.241 Sum_probs=47.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC-chhHHHHHHHHHHHhCCCCCC---CccHHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGVSASG---LSEFESLMKQIQE 283 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~il~~l~~~~~~---~~~~~~l~~~l~~ 283 (533)
.+.+|.++|.+|+||||++..+..... +..+ .+..|+... .....+.++.+.++++.+... ..+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 468999999999999999988876322 2222 334444322 112344555666665543211 1222222222222
Q ss_pred HhCCceEEEEEeCCC
Q 045152 284 YITRKKFFLVLDDVW 298 (533)
Q Consensus 284 ~l~~kr~LlVLDdv~ 298 (533)
.+.+. -++|+|..-
T Consensus 172 ~~~~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFKKA-DVIIVDTAG 185 (437)
T ss_pred HhhcC-CEEEEECCC
Confidence 33333 567888773
No 306
>PTZ00301 uridine kinase; Provisional
Probab=95.70 E-value=0.014 Score=54.25 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998875
No 307
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.69 E-value=0.081 Score=51.42 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=35.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEG 263 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~ 263 (533)
...++.|.|.+|+||||++.++.... ...+-..++|+++.. +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 44588899999999999998876532 222234677887655 344555555544
No 308
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.65 E-value=0.026 Score=53.93 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-HhccccCChHHHHHHHHHHhhccchhhhHH
Q 045152 4 AIVSSLLGQLTSVAADEVKQHVRLVTGVGEEVKKLTSNLRAIRAVLEDA-EKRQMQRDNAVTFWLDQLRDASYDMEDVLD 82 (533)
Q Consensus 4 ~~v~~~l~kl~~~l~~~~~~e~~~~~~~~~~~~~L~~~L~~i~~~l~~a-e~~~~~~~~~~~~Wl~~lrd~ayd~eD~lD 82 (533)
+.|..++++|-.+... -...+.-++.+++-++.+++.+|.||+.. +..+..+++ .+....++-..||++|.++|
T Consensus 296 GyVdFlL~NLkdfq~r----ysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~-~ed~a~~ii~kAyevEYVVD 370 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGR----YSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDT-NEDCATQIIRKAYEVEYVVD 370 (402)
T ss_pred cHHHHHHhhHHHHhcc----ccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhh-hhhHHHHHHHHHhheeeeee
Confidence 3566777777766332 22345567889999999999999999986 554555444 89999999999999999999
Q ss_pred HHH
Q 045152 83 EWT 85 (533)
Q Consensus 83 ~~~ 85 (533)
-+.
T Consensus 371 aCi 373 (402)
T PF12061_consen 371 ACI 373 (402)
T ss_pred hhh
Confidence 774
No 309
>PRK10867 signal recognition particle protein; Provisional
Probab=95.63 E-value=0.067 Score=55.22 Aligned_cols=25 Identities=48% Similarity=0.492 Sum_probs=20.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+.+|.++|++|+||||++..+..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3468999999999999998866654
No 310
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.61 E-value=0.062 Score=53.93 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=53.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-hhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI 285 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l 285 (533)
....++.++|+.|+||||++..+... ....-..+.+|+.... ....+-++...+.++.+.....+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 34689999999999999999888753 2222234566665432 12344555555555543222234455555454332
Q ss_pred -CCceEEEEEeCCCC
Q 045152 286 -TRKKFFLVLDDVWD 299 (533)
Q Consensus 286 -~~kr~LlVLDdv~~ 299 (533)
.+..=++++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13456788888754
No 311
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.61 E-value=0.011 Score=65.29 Aligned_cols=76 Identities=29% Similarity=0.418 Sum_probs=61.3
Q ss_pred cccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCccee
Q 045152 421 PCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKEL 500 (533)
Q Consensus 421 p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~L 500 (533)
+.|+.|++++ ..+..+|.. ..+|+.|+++++. +..+|. . ..+|+.|++++ .+|+.+|+++.++++|+.|
T Consensus 382 ~~L~~LdLs~-N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~--l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~L 450 (788)
T PRK15387 382 SGLKELIVSG-NRLTSLPVL---PSELKELMVSGNR-LTSLPM--L---PSGLLSLSVYR-NQLTRLPESLIHLSSETTV 450 (788)
T ss_pred cccceEEecC-CcccCCCCc---ccCCCEEEccCCc-CCCCCc--c---hhhhhhhhhcc-CcccccChHHhhccCCCeE
Confidence 4688888887 456777754 3678899999765 888883 2 35788999998 6899999999999999999
Q ss_pred eccCCch
Q 045152 501 GMEGSPL 507 (533)
Q Consensus 501 ~~~~c~~ 507 (533)
++++++.
T Consensus 451 dLs~N~L 457 (788)
T PRK15387 451 NLEGNPL 457 (788)
T ss_pred ECCCCCC
Confidence 9999984
No 312
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.60 E-value=0.021 Score=52.83 Aligned_cols=121 Identities=18% Similarity=0.231 Sum_probs=60.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCC---ccHHHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGL---SEFESLMKQIQEY 284 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~---~~~~~l~~~l~~~ 284 (533)
...++.|.|+.|.||||+.+.+.... +-.+. -.+|.. ......+...|+..++...... .....-...+...
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa--~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPA--EYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcch--hhcCccChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 34789999999999999998886431 11111 111111 1111122333333333321111 1111111122222
Q ss_pred h--CCceEEEEEeCCCCCC-ccc----cchhhhcccCCCCCceEEEEecchHHHhhhC
Q 045152 285 I--TRKKFFLVLDDVWDGD-YKK----WNPFFSCLKNGHHESKILITTRDRSVALQLG 335 (533)
Q Consensus 285 l--~~kr~LlVLDdv~~~~-~~~----~~~l~~~l~~~~~gs~IiiTtR~~~v~~~~~ 335 (533)
+ ..++-|+++|+..... ..+ ...+...+.. .|+.+|++|...+++..+.
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 2 3567899999984421 111 1122223322 2788999999988877654
No 313
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.59 E-value=0.0094 Score=44.56 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
+|.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988763
No 314
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.58 E-value=0.0097 Score=51.53 Aligned_cols=21 Identities=43% Similarity=0.515 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999874
No 315
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.56 E-value=0.027 Score=48.91 Aligned_cols=43 Identities=28% Similarity=0.364 Sum_probs=31.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCC
Q 045152 211 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGV 266 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 266 (533)
+|.|.|++|.||||+|+.+.++.... . .+.-.++++|++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~------vsaG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------L------VSAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------e------eeccHHHHHHHHHcCC
Confidence 68999999999999999998742221 1 1334677888887665
No 316
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.55 E-value=0.038 Score=54.44 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=51.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC-----CCccHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS-----GLSEFESLMKQI 281 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l 281 (533)
+..+++-|+|+.|+||||||..+... ....-..++||.....++.. .++.++.... .....++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 45679999999999999999888763 44445678999987776654 3444444311 112334445555
Q ss_pred HHHhCC-ceEEEEEeCCC
Q 045152 282 QEYITR-KKFFLVLDDVW 298 (533)
Q Consensus 282 ~~~l~~-kr~LlVLDdv~ 298 (533)
...++. ..-++|+|-|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 555543 44588999983
No 317
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.55 E-value=0.036 Score=48.53 Aligned_cols=21 Identities=48% Similarity=0.638 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+|.|+|.+|+||||||+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 318
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.099 Score=48.26 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCceEEEEEeCCCCC-CccccchhhhcccC-CCCCceEEEEecchHHHhhhCCCCee
Q 045152 277 LMKQIQEYITRKKFFLVLDDVWDG-DYKKWNPFFSCLKN-GHHESKILITTRDRSVALQLGSIDII 340 (533)
Q Consensus 277 l~~~l~~~l~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~IiiTtR~~~v~~~~~~~~~~ 340 (533)
-...+.+.+-=++-+.|||..++. +.+....+...+.. ..+|+-++|.|..+.++....++..+
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 344455555556778999998653 22333333333321 23467788888888898887664443
No 319
>PRK06762 hypothetical protein; Provisional
Probab=95.53 E-value=0.011 Score=52.93 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999886
No 320
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.51 E-value=0.067 Score=51.71 Aligned_cols=127 Identities=14% Similarity=0.100 Sum_probs=65.0
Q ss_pred HHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC-
Q 045152 191 KNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS- 269 (533)
Q Consensus 191 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~- 269 (533)
.+.++..|... +....++|+|+.|.|||||.+.+... -......+++.- ......+-..++...+..-..
T Consensus 98 ~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~---~~~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~ 168 (270)
T TIGR02858 98 ADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARI---LSTGISQLGLRG-KKVGIVDERSEIAGCVNGVPQH 168 (270)
T ss_pred HHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCc---cCCCCceEEECC-EEeecchhHHHHHHHhcccccc
Confidence 45555555422 34578999999999999999999863 223333444321 111110111222222211000
Q ss_pred ------CC-ccHHHHHHHHHHHh-CCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHHHh
Q 045152 270 ------GL-SEFESLMKQIQEYI-TRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSVAL 332 (533)
Q Consensus 270 ------~~-~~~~~l~~~l~~~l-~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~ 332 (533)
+. ..... ...+...+ ...+-++++|.+-.. +.+..+...+ ..|..+|+||.+..+..
T Consensus 169 ~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 169 DVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 00 11111 11223333 247789999998432 3344444443 24778999998766643
No 321
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.51 E-value=0.069 Score=48.05 Aligned_cols=119 Identities=21% Similarity=0.200 Sum_probs=60.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCC--CCC---C---------Ccc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGV--SAS---G---------LSE 273 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~--~~~---~---------~~~ 273 (533)
.-.+++|+|+.|.|||||.+.+.... ......+++.-....... ..+...++. +.. . ...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 34589999999999999999997631 223344443211000000 011111110 000 0 111
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCCCC-CccccchhhhcccCC-CCCceEEEEecchHHHh
Q 045152 274 FESLMKQIQEYITRKKFFLVLDDVWDG-DYKKWNPFFSCLKNG-HHESKILITTRDRSVAL 332 (533)
Q Consensus 274 ~~~l~~~l~~~l~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~gs~IiiTtR~~~v~~ 332 (533)
.+...-.+...+..++-++++|+.-.. +......+...+... ..|..||++|.+.....
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 122223455556677888999998432 222233344434321 23667888888876554
No 322
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.46 E-value=0.054 Score=50.39 Aligned_cols=84 Identities=19% Similarity=0.287 Sum_probs=51.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-hhHHHHHHHHHHHhCC-------CCCCCccH-----
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEEIRVAKAIIEGLGV-------SASGLSEF----- 274 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~il~~l~~-------~~~~~~~~----- 274 (533)
+..-++|+|.+|+|||+|+..+.++. .-+..+++.+.+. ..+.++.+++...-.. ...+....
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 34678999999999999999888642 2334477777755 4556666666443111 11111111
Q ss_pred ----HHHHHHHHHHhCCceEEEEEeCC
Q 045152 275 ----ESLMKQIQEYITRKKFFLVLDDV 297 (533)
Q Consensus 275 ----~~l~~~l~~~l~~kr~LlVLDdv 297 (533)
-...+.+++ .++.+|+++||+
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred hccchhhhHHHhh--cCCceeehhhhh
Confidence 112223333 689999999999
No 323
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.39 E-value=0.073 Score=53.99 Aligned_cols=84 Identities=23% Similarity=0.304 Sum_probs=48.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCC-----CccHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASG-----LSEFESLMKQI 281 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~-----~~~~~~l~~~l 281 (533)
....++.|.|.+|+|||||+.++... ....-..++|++..+.. ..+. .-.+.++..... ..+.+.+.+.+
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs~--~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEESP--EQIK-LRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcCH--HHHH-HHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 34679999999999999999888753 22233467787754432 2222 223444432211 12334444433
Q ss_pred HHHhCCceEEEEEeCCC
Q 045152 282 QEYITRKKFFLVLDDVW 298 (533)
Q Consensus 282 ~~~l~~kr~LlVLDdv~ 298 (533)
. ..+.-++|+|.+.
T Consensus 155 ~---~~~~~lVVIDSIq 168 (372)
T cd01121 155 E---ELKPDLVIIDSIQ 168 (372)
T ss_pred H---hcCCcEEEEcchH
Confidence 2 2356688999883
No 324
>PRK06547 hypothetical protein; Provisional
Probab=95.38 E-value=0.022 Score=51.18 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
....+|+|.|++|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999763
No 325
>PTZ00494 tuzin-like protein; Provisional
Probab=95.36 E-value=0.3 Score=49.67 Aligned_cols=168 Identities=15% Similarity=0.174 Sum_probs=102.2
Q ss_pred ccCCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHH
Q 045152 179 IDEGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 258 (533)
Q Consensus 179 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 258 (533)
.....+|.|++|-..+.+.|..-+. ..++++.+.|.-|.||++|.+.....+. -..++|.+... ++-++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDtLr 436 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDTLR 436 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cchHH
Confidence 3456789999998888888866543 5789999999999999999988775322 24567776654 45677
Q ss_pred HHHHHhCCCCCCC-cc-HHHHHH---HHHHHhCCceEEEEEeCCCCCCc-cccchhhhcccCCCCCceEEEEecchHHHh
Q 045152 259 AIIEGLGVSASGL-SE-FESLMK---QIQEYITRKKFFLVLDDVWDGDY-KKWNPFFSCLKNGHHESKILITTRDRSVAL 332 (533)
Q Consensus 259 ~il~~l~~~~~~~-~~-~~~l~~---~l~~~l~~kr~LlVLDdv~~~~~-~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~ 332 (533)
.+.+.++.+..+. .+ ++-+.+ .-.....++.-+||+-=-.-.+. ..+.+. ..|.....-|.|++---.+.+..
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTP 515 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhch
Confidence 8888888764332 12 222222 22223456666777653211110 011111 11223334566666544443322
Q ss_pred hh---CCCCeeeCCCCChHhhHHHHHHhh
Q 045152 333 QL---GSIDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 333 ~~---~~~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
.. .....|.+++++.+++.++.++..
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhccc
Confidence 11 224678999999999999877643
No 326
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.35 E-value=0.047 Score=50.36 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....+|.|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999999876
No 327
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.33 E-value=0.02 Score=54.02 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
-|.|+|++|+||||+|+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999875
No 328
>PRK03839 putative kinase; Provisional
Probab=95.32 E-value=0.012 Score=53.31 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 329
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.32 E-value=0.28 Score=48.12 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=76.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcch---h---hh--ccCCceEEEEe-CCchhHHHHHHHHHHHhCCCCCCCccHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNND---E---VK--RNFEKVIWVCV-SDTFEEIRVAKAIIEGLGVSASGLSEFESLM 278 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~---~---~~--~~F~~~~wv~v-s~~~~~~~l~~~il~~l~~~~~~~~~~~~l~ 278 (533)
-..+..++|..|.||+++|..+.+.- . +. .|-+...++.. .....+.++. ++.+.+...+
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~---------- 85 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS---------- 85 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC----------
Confidence 34667799999999999998776521 0 01 11112222221 1111111111 1222221110
Q ss_pred HHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecc-hHHHhh-hCCCCeeeCCCCChHhhHHHHHH
Q 045152 279 KQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRD-RSVALQ-LGSIDIIPVKELAEEECWSLLER 356 (533)
Q Consensus 279 ~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~ 356 (533)
.-.+++-++|+|++...+......+...+.....++.+|++|.+ ..+... ......+++.+++.++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 00146778899999776656677788888777777777766644 333322 33367899999999998877665
No 330
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.078 Score=56.45 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=75.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhC
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIT 286 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 286 (533)
...+.+.++|++|.|||.||+++.+. ...+| +.+... + ++....+ .....+...+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~f-----i~v~~~-~-------l~sk~vG-----esek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRF-----ISVKGS-E-------LLSKWVG-----ESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeE-----EEeeCH-H-------Hhccccc-----hHHHHHHHHHHHHHc
Confidence 45668999999999999999999972 23333 222222 1 1111111 112223333444445
Q ss_pred CceEEEEEeCCCCC-----Cc------cccchhhhccc--CCCCCceEEEEecchHHHhhh-----CCCCeeeCCCCChH
Q 045152 287 RKKFFLVLDDVWDG-----DY------KKWNPFFSCLK--NGHHESKILITTRDRSVALQL-----GSIDIIPVKELAEE 348 (533)
Q Consensus 287 ~kr~LlVLDdv~~~-----~~------~~~~~l~~~l~--~~~~gs~IiiTtR~~~v~~~~-----~~~~~~~l~~L~~~ 348 (533)
..+..|.+|+++.. .. .....+...+. ....+..||-||..+...... .-...+.++.-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78899999999541 00 11122222232 122334455566554433321 22567889999999
Q ss_pred hhHHHHHHhhc
Q 045152 349 ECWSLLERLAF 359 (533)
Q Consensus 349 ~~~~Lf~~~a~ 359 (533)
+..+.|+.+..
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999998874
No 331
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.29 E-value=0.025 Score=62.63 Aligned_cols=80 Identities=24% Similarity=0.297 Sum_probs=60.5
Q ss_pred ccccccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCC
Q 045152 416 NISIMPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQIT 495 (533)
Q Consensus 416 ~~~ilp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~ 495 (533)
+..+.++|+.|++++| .+..+|..+. .+|+.|++++|. +..+| ..+ .++|++|++++ .+|..+|+.+. +
T Consensus 215 P~~l~~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP--~~l--~s~L~~L~Ls~-N~L~~LP~~l~--~ 283 (754)
T PRK15370 215 PENLQGNIKTLYANSN-QLTSIPATLP--DTIQEMELSINR-ITELP--ERL--PSALQSLDLFH-NKISCLPENLP--E 283 (754)
T ss_pred ChhhccCCCEEECCCC-ccccCChhhh--ccccEEECcCCc-cCcCC--hhH--hCCCCEEECcC-CccCccccccC--C
Confidence 3344557888888864 5777887654 578888888765 77888 444 36899999975 68999998775 5
Q ss_pred CcceeeccCCc
Q 045152 496 TLKELGMEGSP 506 (533)
Q Consensus 496 ~L~~L~~~~c~ 506 (533)
+|++|++++|.
T Consensus 284 sL~~L~Ls~N~ 294 (754)
T PRK15370 284 ELRYLSVYDNS 294 (754)
T ss_pred CCcEEECCCCc
Confidence 89999999884
No 332
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.26 E-value=0.15 Score=47.85 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|.|||||++.+..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999864
No 333
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.04 Score=48.68 Aligned_cols=119 Identities=19% Similarity=0.188 Sum_probs=60.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
..+++|+|..|.|||||.+.+... -......+++........ ........+..-. +....+...-.+...+...
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~---~~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~-qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL---LKPTSGEILIDGKDIAKL--PLEELRRRIGYVP-QLSGGQRQRVALARALLLN 98 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCccEEEECCEEcccC--CHHHHHhceEEEe-eCCHHHHHHHHHHHHHhcC
Confidence 368999999999999999999863 223445555432111000 0001111111100 0111222233344555556
Q ss_pred eEEEEEeCCCCC-CccccchhhhcccCC-CCCceEEEEecchHHHhh
Q 045152 289 KFFLVLDDVWDG-DYKKWNPFFSCLKNG-HHESKILITTRDRSVALQ 333 (533)
Q Consensus 289 r~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~gs~IiiTtR~~~v~~~ 333 (533)
+-++++|+.-.. +......+...+... ..+..++++|.+......
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 788999998432 222233333333321 124668888887666554
No 334
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.26 E-value=0.032 Score=50.58 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988863
No 335
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.23 E-value=0.015 Score=52.96 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+..+|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998875
No 336
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.22 E-value=0.011 Score=30.72 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=8.6
Q ss_pred CCcceEEeccCCCCCCCC
Q 045152 471 PRLSSLRIEYCPKLKLLP 488 (533)
Q Consensus 471 ~~L~~L~l~~C~~l~~lP 488 (533)
++|+.|+|++|. |++||
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 466777777765 66665
No 337
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.11 Score=57.58 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=68.5
Q ss_pred ceeechhhHHHHHHHHhCCCccCC--CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQ--KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 260 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 260 (533)
.++|-++-+..|-+.+........ .....+.+.|+.|+|||-||+.+... +-...+..+-|+.+. ... +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse------~~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSE------FQE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhh------hhh-h
Confidence 467777777777777765442112 25778889999999999999888752 323333444443332 222 3
Q ss_pred HHHhCCCCCCCccHHHHHHHHHHHhCCceE-EEEEeCCCCCCccccchhhhccc
Q 045152 261 IEGLGVSASGLSEFESLMKQIQEYITRKKF-FLVLDDVWDGDYKKWNPFFSCLK 313 (533)
Q Consensus 261 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~-LlVLDdv~~~~~~~~~~l~~~l~ 313 (533)
.+-++.++ .... .+....|.+.++.++| +|.||||...+......+...+.
T Consensus 634 skligsp~-gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 634 SKLIGSPP-GYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhccCCCc-cccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 33333322 1111 1122355666666654 77799997766555554444444
No 338
>PRK04328 hypothetical protein; Provisional
Probab=95.20 E-value=0.12 Score=49.53 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=31.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCch
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF 251 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 251 (533)
+..+++.|.|.+|.|||+||.++... .. ..-..++|++.....
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee~~ 63 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEEHP 63 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeCCH
Confidence 45789999999999999999776542 22 234567888876643
No 339
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.19 E-value=0.21 Score=46.31 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|..|.|||||++.+..
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999864
No 340
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.18 E-value=0.1 Score=49.38 Aligned_cols=50 Identities=18% Similarity=0.140 Sum_probs=31.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 260 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 260 (533)
+...++.|.|.+|.||||||.++... ..+.. ..+++++... +..++.+.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 34569999999999999998555432 22222 4456666333 345555554
No 341
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.17 E-value=0.18 Score=55.47 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..++.++|+.|+||||++..+...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 579999999999999999887753
No 342
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.17 E-value=0.037 Score=59.13 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=35.3
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..++|....+.++.+.+.... ..-..|.|+|..|.||+++|+.++.
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A----~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLA----MLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHh----CCCCCEEEECCCCccHHHHHHHHHH
Confidence 368999888888877764332 1234588999999999999999875
No 343
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.17 E-value=0.011 Score=48.46 Aligned_cols=21 Identities=43% Similarity=0.543 Sum_probs=18.5
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 045152 212 ISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~ 232 (533)
|.|+|++|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998764
No 344
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.16 E-value=0.17 Score=46.31 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=69.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC-------------------Cch-----------------
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS-------------------DTF----------------- 251 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs-------------------~~~----------------- 251 (533)
...|++|.|++|.|||||.+.+-. ....-...+||.-. +.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 456999999999999999998864 22233344444310 111
Q ss_pred --------hHHHHHHHHHHHhCCCCC------CCccHHHHHHHHHHHhCCceEEEEEeCCCCC-Cccccchhhhccc-CC
Q 045152 252 --------EEIRVAKAIIEGLGVSAS------GLSEFESLMKQIQEYITRKKFFLVLDDVWDG-DYKKWNPFFSCLK-NG 315 (533)
Q Consensus 252 --------~~~~l~~~il~~l~~~~~------~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~-~~~~~~~l~~~l~-~~ 315 (533)
...+...++++.++.... ...--++..-.+.+.|.=++-++.+|..-+. +.+.-.++...+. -.
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 223344455555554321 1122334444566777777788899998432 2222222222222 12
Q ss_pred CCCceEEEEecchHHHhhhC
Q 045152 316 HHESKILITTRDRSVALQLG 335 (533)
Q Consensus 316 ~~gs~IiiTtR~~~v~~~~~ 335 (533)
..|-.+|+.|..-..|..+.
T Consensus 184 ~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 184 EEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred HcCCeEEEEechhHHHHHhh
Confidence 44667788888776666543
No 345
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.014 Score=53.07 Aligned_cols=24 Identities=42% Similarity=0.499 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..+|+|-||-|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999874
No 346
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.34 Score=45.15 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=84.8
Q ss_pred ceee-chhhHHHHHHHHhCCCcc-------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHH
Q 045152 183 EVCG-RVEEKNELLSKLLCESSE-------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 254 (533)
Q Consensus 183 ~~vG-R~~e~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (533)
+++| -+..+.+|.+.+.-.-.+ +-.++.-+.++|++|.|||-||+.|++ +..+-|+.||..--+.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVah-------ht~c~firvsgselvq 219 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAH-------HTDCTFIRVSGSELVQ 219 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHh-------hcceEEEEechHHHHH
Confidence 3555 466677776655322110 234667889999999999999999996 3456678887653221
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCCc-----------cccc---hhhhccc--CCCC
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQEYI-TRKKFFLVLDDVWDGDY-----------KKWN---PFFSCLK--NGHH 317 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVLDdv~~~~~-----------~~~~---~l~~~l~--~~~~ 317 (533)
+-|-+ .......+.-.. ..-+..|..|.++.... +.-. .+...+. ...+
T Consensus 220 ---k~ige-----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 220 ---KYIGE-----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred ---HHhhh-----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 11111 011112222111 34566788888754210 0001 1222222 1245
Q ss_pred CceEEEEecchHHHhhh--C---CCCeeeCCCCChHhhHHHHHHhh
Q 045152 318 ESKILITTRDRSVALQL--G---SIDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 318 gs~IiiTtR~~~v~~~~--~---~~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
.-+||..|..-++.... . .+..++.++-+++.-.++++-+.
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 66788877665443321 1 25667888888887777776543
No 347
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.14 E-value=0.019 Score=63.92 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..++.|+|+.|.|||||.+.+.-
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHH
Confidence 47899999999999999988864
No 348
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.13 E-value=0.0041 Score=67.65 Aligned_cols=84 Identities=27% Similarity=0.456 Sum_probs=47.7
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCC--------------------ccCCCCCCCcceEEe
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPI--------------------LEDHIFLPRLSSLRI 478 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~--------------------~~~~~~l~~L~~L~l 478 (533)
+++|+.|.++| ..+..+|+. +.++..|+.|+++|-. |+.||. .+++..++.|+.+++
T Consensus 382 ~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 382 FKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDL 459 (1081)
T ss_pred ccceeeeeecc-cccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEec
Confidence 44788888888 455556644 3455666666666432 555551 125555666666666
Q ss_pred ccCCCCCC--CCcCCCCCCCcceeeccCCch
Q 045152 479 EYCPKLKL--LPDSLLQITTLKELGMEGSPL 507 (533)
Q Consensus 479 ~~C~~l~~--lP~~~~~l~~L~~L~~~~c~~ 507 (533)
+ |.+|+. +|..... ++|++||++|++.
T Consensus 460 S-~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 460 S-CNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred c-cchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 3 456543 3322222 6667777766663
No 349
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.10 E-value=0.074 Score=56.09 Aligned_cols=134 Identities=15% Similarity=0.199 Sum_probs=68.5
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 262 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 262 (533)
.++|......++...+.... .....+.|.|..|.||+++|+.+.... .......+-+++..- ..+.+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~~--~~~~~~~~~~~c~~~--~~~~~~~~l- 205 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRHS--PRANGPFIALNMAAI--PKDLIESEL- 205 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHhC--CCCCCCeEEEeCCCC--CHHHHHHHh-
Confidence 57888777777776664332 233467899999999999999998632 112223333443332 122333222
Q ss_pred HhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCC-----------CCceEEEEecch
Q 045152 263 GLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGH-----------HESKILITTRDR 328 (533)
Q Consensus 263 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IiiTtR~~ 328 (533)
++.......... .......-....-.|+||++..........+...+..+. ...|||+||...
T Consensus 206 -fg~~~~~~~~~~--~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 206 -FGHEKGAFTGAN--TRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred -cCCCCCCCCCcc--cCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 221110000000 000000001123348899997766555556665554321 245788887643
No 350
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.07 E-value=0.14 Score=52.67 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987764
No 351
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.06 E-value=0.16 Score=49.10 Aligned_cols=91 Identities=12% Similarity=0.262 Sum_probs=49.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-hhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIT 286 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 286 (533)
+..+++++|.+|+||||++..+... ....=..+.+++.... .....-++...+.++.+.....+...+...+...-.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 3469999999999999999888653 2222124555654432 122222333333343322222333444444433222
Q ss_pred -CceEEEEEeCCCCC
Q 045152 287 -RKKFFLVLDDVWDG 300 (533)
Q Consensus 287 -~kr~LlVLDdv~~~ 300 (533)
.+.=++++|..-..
T Consensus 152 ~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 152 EARVDYILIDTAGKN 166 (270)
T ss_pred cCCCCEEEEECCCCC
Confidence 24568899988554
No 352
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.05 E-value=0.054 Score=59.59 Aligned_cols=131 Identities=18% Similarity=0.122 Sum_probs=70.0
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
+.++|....+.++.+...... .....|.|+|..|+||+++|+.+++.. ...-...+.|++..-. ...+..+++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~~A~~ih~~s--~r~~~pfv~vnc~~~~-~~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAA----KSSFPVLLCGEEGVGKALLAQAIHNES--ERAAGPYIAVNCQLYP-DEALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCcCHHHHHHHHHHhC--CccCCCeEEEECCCCC-hHHHHHHhc
Confidence 357899888888877775443 223457899999999999999998731 1111233444444322 222222332
Q ss_pred HHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCC-----------CCceEEEEecc
Q 045152 262 EGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGH-----------HESKILITTRD 327 (533)
Q Consensus 262 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IiiTtR~ 327 (533)
........... ...+. ....=.|+||++..........|...+..+. ...|||.||..
T Consensus 398 g~~~~~~~~~~-----~g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 398 GSDRTDSENGR-----LSKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCCcCccCCC-----CCcee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 21111000000 00000 1123358999997766555566666654321 13467776654
No 353
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.03 E-value=0.014 Score=53.80 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+|+|.|++|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 354
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.03 E-value=0.15 Score=52.49 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|.||||||+.+.-
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHc
Confidence 345899999999999999999863
No 355
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.03 E-value=0.035 Score=48.91 Aligned_cols=35 Identities=31% Similarity=0.446 Sum_probs=29.7
Q ss_pred hhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 189 EEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 189 ~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
+.+++|.+.|. + ++++++|..|+|||||...+..+
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 56788888882 3 68999999999999999999875
No 356
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.02 E-value=0.12 Score=54.00 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..|++++|+.|+||||++..+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 479999999999999999888763
No 357
>PRK04040 adenylate kinase; Provisional
Probab=95.02 E-value=0.018 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|+|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 358
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.00 E-value=0.032 Score=47.46 Aligned_cols=40 Identities=25% Similarity=0.121 Sum_probs=28.3
Q ss_pred hhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 189 EEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 189 ~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
++..++-+.|...- ....+|.+.|.-|.||||+++.+.+.
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445555553221 23458999999999999999999874
No 359
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.99 E-value=0.008 Score=57.17 Aligned_cols=100 Identities=18% Similarity=0.285 Sum_probs=72.3
Q ss_pred hHHHHHHHhh-----hhhhccc--ccccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCc
Q 045152 401 VKEWQRILDS-----EMWKENI--SIMPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRL 473 (533)
Q Consensus 401 ~~~w~~~l~~-----~~~~~~~--~ilp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L 473 (533)
.+.|+.+-.- .+..+.+ ..+|.++.|.+++ ..+..+- ++..+.+|+.|++++-. |.++- ...-+|.|+
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~--Gwh~KLGNI 354 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTVQ-NLAELPQLQLLDLSGNL-LAECV--GWHLKLGNI 354 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccc-cceeeeh-hhhhcccceEeecccch-hHhhh--hhHhhhcCE
Confidence 4567665432 2222333 4578999999998 4444433 37788999999999644 66665 455678999
Q ss_pred ceEEeccCCCCCCCCcCCCCCCCcceeeccCCch
Q 045152 474 SSLRIEYCPKLKLLPDSLLQITTLKELGMEGSPL 507 (533)
Q Consensus 474 ~~L~l~~C~~l~~lP~~~~~l~~L~~L~~~~c~~ 507 (533)
+.|+|.+ ..+.+|. ++++|-+|..||++++.+
T Consensus 355 KtL~La~-N~iE~LS-GL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 355 KTLKLAQ-NKIETLS-GLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred eeeehhh-hhHhhhh-hhHhhhhheeccccccch
Confidence 9999988 6778877 899999999999998864
No 360
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.98 E-value=0.018 Score=51.70 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
....|.|+|++|+||||+|+.+.+.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999863
No 361
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.96 E-value=0.026 Score=50.45 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
....+++|+|..|+|||||++.+...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 35679999999999999999998863
No 362
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.96 E-value=0.019 Score=51.98 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.+++|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999988763
No 363
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.93 E-value=0.1 Score=48.14 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4469999999999999999988764
No 364
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.90 E-value=0.17 Score=45.09 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=60.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceE--EEEeCCchhHHHHHHHHHHHh-----CCC----CCCC-cc---
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVI--WVCVSDTFEEIRVAKAIIEGL-----GVS----ASGL-SE--- 273 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~--wv~vs~~~~~~~l~~~il~~l-----~~~----~~~~-~~--- 273 (533)
...|-|++..|.||||.|-.+.-. .....+...+ |+--........++..+ .+ +.. ..+. .+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 367888888999999999555432 1222232211 22222122333333332 11 110 0011 11
Q ss_pred HHHHHHHHHHHhCC-ceEEEEEeCCCC---CCccccchhhhcccCCCCCceEEEEecch
Q 045152 274 FESLMKQIQEYITR-KKFFLVLDDVWD---GDYKKWNPFFSCLKNGHHESKILITTRDR 328 (533)
Q Consensus 274 ~~~l~~~l~~~l~~-kr~LlVLDdv~~---~~~~~~~~l~~~l~~~~~gs~IiiTtR~~ 328 (533)
..+..+..++.+.. +--|+|||.+-. ...-..+.+...+.....+.-||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 12233334444444 456999999832 11233445666666666677899999985
No 365
>PRK00625 shikimate kinase; Provisional
Probab=94.89 E-value=0.019 Score=51.67 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.|.|+||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999976
No 366
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.89 E-value=0.023 Score=47.67 Aligned_cols=27 Identities=37% Similarity=0.566 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHhcchhhhccCC
Q 045152 212 ISLVGLGGIGKTTLAQLAYNNDEVKRNFE 240 (533)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 240 (533)
|.|+|.+|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999986 3555564
No 367
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.87 E-value=0.15 Score=46.78 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|.|+.|.|||||.+.+..
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 446899999999999999999876
No 368
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.62 Score=47.41 Aligned_cols=155 Identities=15% Similarity=0.098 Sum_probs=81.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
-+--.++||+|.|||+++.++.+.. .|+..- +..+...+-.+ ++.++.. ...
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L----~ydIyd-LeLt~v~~n~d-Lr~LL~~----------------------t~~ 286 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL----NYDIYD-LELTEVKLDSD-LRHLLLA----------------------TPN 286 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc----CCceEE-eeeccccCcHH-HHHHHHh----------------------CCC
Confidence 3567899999999999999998742 232211 11111111111 2222211 234
Q ss_pred eEEEEEeCCCCC--------C-c---------cccchhhhccc--C-CCCCceEE-EEecchHHHh--hhC---CCCeee
Q 045152 289 KFFLVLDDVWDG--------D-Y---------KKWNPFFSCLK--N-GHHESKIL-ITTRDRSVAL--QLG---SIDIIP 341 (533)
Q Consensus 289 r~LlVLDdv~~~--------~-~---------~~~~~l~~~l~--~-~~~gs~Ii-iTtR~~~v~~--~~~---~~~~~~ 341 (533)
+-+||+.|++-. . . -.+.-|+.++. + ...+-||| +||...+-.. .+. .+..+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 566777777431 0 0 01112333332 1 12234555 5666543322 112 256788
Q ss_pred CCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHHh-hcc
Q 045152 342 VKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLL-RSK 398 (533)
Q Consensus 342 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L-~~~ 398 (533)
|..=+.+....||.+...... + ..+..+|.+...|.-+.-..++..| ..+
T Consensus 367 mgyCtf~~fK~La~nYL~~~~---~----h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEE---D----HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCC---C----cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 999999999999998764211 2 2345566666666666655555544 444
No 369
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.86 E-value=0.035 Score=48.00 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=27.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 249 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 249 (533)
.+|.|+|..|+|||||++.+.+. ..+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~-l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE-LKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH-HHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HhHcCCceEEEEEccC
Confidence 37999999999999999999985 2345666666666544
No 370
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.86 E-value=0.21 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|.|||||.+.+..
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 446899999999999999999875
No 371
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.85 E-value=0.017 Score=52.47 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999875
No 372
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.85 E-value=0.045 Score=51.68 Aligned_cols=39 Identities=36% Similarity=0.501 Sum_probs=28.2
Q ss_pred hHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 190 EKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 190 e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
+..++++.+.... ++..+|+|.|++|+|||||...+...
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 4556666665432 46789999999999999999887653
No 373
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.84 E-value=0.69 Score=40.15 Aligned_cols=84 Identities=13% Similarity=0.218 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHhhccchhhhH
Q 045152 2 VDAIVSSLLGQLTSVAADEVKQHVRLVTGVGEEVKKLTSNLRAIRAVLEDAEKRQMQRDNAVTFWLDQLRDASYDMEDVL 81 (533)
Q Consensus 2 a~~~v~~~l~kl~~~l~~~~~~e~~~~~~~~~~~~~L~~~L~~i~~~l~~ae~~~~~~~~~~~~Wl~~lrd~ayd~eD~l 81 (533)
||-+.+++++...+.+...+.+..+.....+.-+++|..+++.|.-++++.+.....-+..-+.-+++|.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 44455555555555444446666666667788899999999999999998887543323333666888999999999998
Q ss_pred HHHH
Q 045152 82 DEWT 85 (533)
Q Consensus 82 D~~~ 85 (533)
+.|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 8774
No 374
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.82 E-value=0.022 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
++|+|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999987
No 375
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.82 E-value=0.05 Score=57.85 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=37.3
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
+++|....+.++.+.+..-. .....|.|.|..|.||+++|+.+++.
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred heeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 58999998888888774333 23467899999999999999999863
No 376
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.82 E-value=0.046 Score=46.70 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=40.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
..-|.|.|-+|+|||||++.+..-. ..-|+++|+-.....++...=+.. ....-+.+.+.+.|...+.+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-------~~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-------GLEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-------CCceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhcC
Confidence 4568899999999999999998521 134677665433333222211111 122345566666676666543
No 377
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.81 E-value=0.13 Score=44.69 Aligned_cols=21 Identities=48% Similarity=0.640 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 045152 212 ISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~ 232 (533)
|+|+|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999875
No 378
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.79 E-value=0.8 Score=45.37 Aligned_cols=49 Identities=29% Similarity=0.182 Sum_probs=32.6
Q ss_pred eeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchh
Q 045152 339 IIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAA 388 (533)
Q Consensus 339 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 388 (533)
++++++++.+|+..++....-.+-- .....-+...+++....+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887642211 111223445566666679998643
No 379
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.77 E-value=0.14 Score=49.72 Aligned_cols=87 Identities=20% Similarity=0.161 Sum_probs=47.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC-------CCccHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS-------GLSEFESLMK 279 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-------~~~~~~~l~~ 279 (533)
.+..++.|+|.+|.|||||...+.+. ..... ..+.+ ..+..+..+ .+.++..+.+.. --.+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~-~~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR--LKDSV-PCAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--hccCC-CEEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 57899999999999999999988863 22333 22222 222222222 122333332210 0122334455
Q ss_pred HHHHHhCCceEEEEEeCCCC
Q 045152 280 QIQEYITRKKFFLVLDDVWD 299 (533)
Q Consensus 280 ~l~~~l~~kr~LlVLDdv~~ 299 (533)
.+........-++|++++..
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 55554444456788999843
No 380
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.76 E-value=0.031 Score=50.80 Aligned_cols=36 Identities=36% Similarity=0.445 Sum_probs=27.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 246 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 246 (533)
.++|.|+|+.|+|||||++.+.. .....|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 46899999999999999999987 3445665555544
No 381
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.76 E-value=0.2 Score=47.33 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=30.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 250 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 250 (533)
+....+.|.|.+|.||||||..+.... .+ .-..++|++....
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccCC
Confidence 456899999999999999998765421 22 3456788876443
No 382
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.76 E-value=0.2 Score=53.08 Aligned_cols=60 Identities=20% Similarity=0.122 Sum_probs=38.1
Q ss_pred HHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHH
Q 045152 192 NELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 259 (533)
Q Consensus 192 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 259 (533)
..+-+.|..+- ..-+++.|.|++|+|||||+.++... ...+-..+++++..+. ..++...
T Consensus 250 ~~lD~~lgGG~----~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eEs--~~~i~~~ 309 (484)
T TIGR02655 250 VRLDEMCGGGF----FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEES--RAQLLRN 309 (484)
T ss_pred HhHHHHhcCCc----cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCC--HHHHHHH
Confidence 44555553332 46789999999999999999777653 2223345677765543 3444444
No 383
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.72 E-value=0.044 Score=55.20 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=60.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
...|.|.|+.|.||||+.+.+.+. +..+....++. +.++... .......-+.....+ .........++..++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~~~~~i~q~evg-~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRNKRSLINQREVG-LDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccCccceEEccccC-CCCcCHHHHHHHhhccC
Confidence 468999999999999999988763 33344455543 3332211 100000000000001 11123455677778888
Q ss_pred eEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHHH
Q 045152 289 KFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSVA 331 (533)
Q Consensus 289 r~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~ 331 (533)
+=.|++|++.+. +.+.... .....|..++.|.-..+..
T Consensus 196 pd~i~vgEird~--~~~~~~l---~aa~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 196 PDVILIGEMRDL--ETVELAL---TAAETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCEEEEeCCCCH--HHHHHHH---HHHHcCCcEEEEEcCCCHH
Confidence 889999999543 3333322 2233456566666554443
No 384
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.71 E-value=0.1 Score=52.01 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 045152 212 ISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~ 232 (533)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999998864
No 385
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.11 Score=52.03 Aligned_cols=83 Identities=24% Similarity=0.380 Sum_probs=51.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCC-----CccHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASG-----LSEFESLMKQIQ 282 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~-----~~~~~~l~~~l~ 282 (533)
.-++|.|-|.+|||||||.-++..+ ....- .+.+|+-.+...-. +--.++++....+ ..+++.+...+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~~Qi---klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESLQQI---KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCHHHH---HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 4679999999999999999888874 33333 67777644432211 2223455533221 234444444443
Q ss_pred HHhCCceEEEEEeCCCC
Q 045152 283 EYITRKKFFLVLDDVWD 299 (533)
Q Consensus 283 ~~l~~kr~LlVLDdv~~ 299 (533)
..++-++|+|-+..
T Consensus 166 ---~~~p~lvVIDSIQT 179 (456)
T COG1066 166 ---QEKPDLVVIDSIQT 179 (456)
T ss_pred ---hcCCCEEEEeccce
Confidence 36788999999843
No 386
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.70 E-value=0.14 Score=46.75 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=27.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccC--------CceEEEEeCCch
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNF--------EKVIWVCVSDTF 251 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--------~~~~wv~vs~~~ 251 (533)
.++.|.|++|+||||++..+.........| ..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 478899999999999997776542222222 367788766653
No 387
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.65 E-value=0.044 Score=52.92 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=34.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCch
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF 251 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 251 (533)
+..+++.|+|.+|+|||+++.++... ...+...++||+.....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCCH
Confidence 56789999999999999999776652 44458889999877653
No 388
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.64 E-value=0.042 Score=51.81 Aligned_cols=87 Identities=28% Similarity=0.317 Sum_probs=48.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCC---------------CCC-
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVS---------------ASG- 270 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~---------------~~~- 270 (533)
+..+++.|.|.+|+|||+|+.++... ..+..=..++|++...+. .++.+.+- .++.. ...
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 45679999999999999999665432 222213467888876543 33333322 33211 000
Q ss_pred ----CccHHHHHHHHHHHhCC-ceEEEEEeCC
Q 045152 271 ----LSEFESLMKQIQEYITR-KKFFLVLDDV 297 (533)
Q Consensus 271 ----~~~~~~l~~~l~~~l~~-kr~LlVLDdv 297 (533)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23455555555555543 3367777776
No 389
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.49 Score=45.39 Aligned_cols=96 Identities=23% Similarity=0.274 Sum_probs=58.8
Q ss_pred ceeechhhHHHHHHHHhCCC------ccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCES------SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRV 256 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l 256 (533)
++-|.+..++.|.+...-.- .......+-|.++|++|.||+.||+.|..... .-|.+||...
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-------STFFSvSSSD----- 201 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-------STFFSVSSSD----- 201 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-------CceEEeehHH-----
Confidence 46788888888777542111 00124578899999999999999999987421 2234454432
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCC
Q 045152 257 AKAIIEGLGVSASGLSEFESLMKQIQEYI-TRKKFFLVLDDVWD 299 (533)
Q Consensus 257 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVLDdv~~ 299 (533)
++....+ +.+.++..|.+.. .+|+-+|.+|.++.
T Consensus 202 ---LvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 202 ---LVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ---HHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 1222111 1234455555544 45889999999853
No 390
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.63 E-value=0.14 Score=55.02 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+....++|+|+.|.|||||++.+..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3557899999999999999999864
No 391
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=94.63 E-value=0.19 Score=55.97 Aligned_cols=137 Identities=18% Similarity=0.254 Sum_probs=80.5
Q ss_pred hhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCC
Q 045152 188 VEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVS 267 (533)
Q Consensus 188 ~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~ 267 (533)
...+.+|.+.+. .-.|+.|.|..|.||||-.-+++-+.-. .....+-++-........+...+.++++..
T Consensus 52 ~~~~~~i~~ai~--------~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~ 121 (845)
T COG1643 52 TAVRDEILKAIE--------QNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEK 121 (845)
T ss_pred HHHHHHHHHHHH--------hCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCC
Confidence 356778888773 4569999999999999988444432111 223445444455566778888888888764
Q ss_pred CCC-------------------CccHHHHHHHHH-HHhCCceEEEEEeCCCCCCccccchhhhccc----CCCCCceEEE
Q 045152 268 ASG-------------------LSEFESLMKQIQ-EYITRKKFFLVLDDVWDGDYKKWNPFFSCLK----NGHHESKILI 323 (533)
Q Consensus 268 ~~~-------------------~~~~~~l~~~l~-~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~----~~~~gs~Iii 323 (533)
..+ .++...+...++ +.+-.+--.+|+|.+++-+. .-+-++..+. .-..--||||
T Consensus 122 ~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl-~tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 122 LGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSL-NTDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred cCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhH-HHHHHHHHHHHHHhhcCCCceEEE
Confidence 211 122334444443 33344556899999987542 2222333222 2222478999
Q ss_pred Eecc---hHHHhhhC
Q 045152 324 TTRD---RSVALQLG 335 (533)
Q Consensus 324 TtR~---~~v~~~~~ 335 (533)
+|=. +..+..++
T Consensus 201 mSATld~~rfs~~f~ 215 (845)
T COG1643 201 MSATLDAERFSAYFG 215 (845)
T ss_pred EecccCHHHHHHHcC
Confidence 8754 34444444
No 392
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.63 E-value=0.19 Score=51.59 Aligned_cols=87 Identities=22% Similarity=0.227 Sum_probs=48.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCC-------CCCCccHHH----
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVS-------ASGLSEFES---- 276 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~-------~~~~~~~~~---- 276 (533)
....++|+|..|+|||||++.+..... ....++...-...-.+.++....+..-+.. ..+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 446899999999999999998886421 222222222222334555555544332211 111111111
Q ss_pred -HHHHHHHHh--CCceEEEEEeCC
Q 045152 277 -LMKQIQEYI--TRKKFFLVLDDV 297 (533)
Q Consensus 277 -l~~~l~~~l--~~kr~LlVLDdv 297 (533)
....+.+++ +++.+|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 222244444 578999999999
No 393
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.61 E-value=0.19 Score=51.85 Aligned_cols=87 Identities=22% Similarity=0.182 Sum_probs=47.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCC-----C-CCCccH-----HH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVS-----A-SGLSEF-----ES 276 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~-----~-~~~~~~-----~~ 276 (533)
....++|+|..|+|||||++.+.... .....++++.-...-++.++....+...... . .+.... ..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 45689999999999999999887532 2223444443223334444444333332110 1 111111 11
Q ss_pred HHHHHHHHh--CCceEEEEEeCC
Q 045152 277 LMKQIQEYI--TRKKFFLVLDDV 297 (533)
Q Consensus 277 l~~~l~~~l--~~kr~LlVLDdv 297 (533)
....+.+++ +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122233343 478999999999
No 394
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.61 E-value=0.021 Score=51.86 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 395
>PRK06217 hypothetical protein; Validated
Probab=94.61 E-value=0.023 Score=51.64 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.|.|.|.+|.||||+|+.+.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 396
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.61 E-value=0.026 Score=47.01 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 045152 212 ISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~ 232 (533)
|.|+|..|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999865
No 397
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.60 E-value=0.026 Score=50.97 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999998763
No 398
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.60 E-value=0.21 Score=51.33 Aligned_cols=25 Identities=40% Similarity=0.405 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....+|.++|..|+||||++..+..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999977764
No 399
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.60 E-value=0.027 Score=52.20 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...+|+|+|+.|+|||||++.+...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999863
No 400
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.59 E-value=0.13 Score=46.00 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=44.2
Q ss_pred EEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCC---ccHHHHHHHHHHHhCCc
Q 045152 212 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGL---SEFESLMKQIQEYITRK 288 (533)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~---~~~~~l~~~l~~~l~~k 288 (533)
+.|.|.+|.|||++|.++... ....++++.....++. ++.+.|.+.....+..- .....+...+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 679999999999999887642 2346777777766654 34444443222221111 1122333333221 2 2
Q ss_pred eEEEEEeCC
Q 045152 289 KFFLVLDDV 297 (533)
Q Consensus 289 r~LlVLDdv 297 (533)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337899987
No 401
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.59 E-value=0.12 Score=49.75 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=29.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 249 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 249 (533)
+..+++.|.|++|.|||++|.++... ..+ .=..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~-~a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT-QAS-RGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH-HHh-CCCcEEEEEecC
Confidence 45679999999999999999776542 122 234677888754
No 402
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.58 E-value=0.2 Score=51.53 Aligned_cols=86 Identities=17% Similarity=0.258 Sum_probs=50.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC-chhHHHHHHHHHHHhCCC-------CCCCccHHH---
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGVS-------ASGLSEFES--- 276 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~il~~l~~~-------~~~~~~~~~--- 276 (533)
....++|+|..|+|||||.+.+.+.. +.+..++..+.+ ...+.+++.+....-... ..+......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 45689999999999999999998632 344455555554 334445555543211000 111111111
Q ss_pred --HHHHHHHHh--CCceEEEEEeCC
Q 045152 277 --LMKQIQEYI--TRKKFFLVLDDV 297 (533)
Q Consensus 277 --l~~~l~~~l--~~kr~LlVLDdv 297 (533)
....+.+++ +++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 122233444 578999999999
No 403
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.56 E-value=0.024 Score=49.65 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3688999999999999998763
No 404
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.51 E-value=0.037 Score=51.40 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.....|.|+|++|+|||||++.+.+
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4678899999999999999999875
No 405
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.49 E-value=0.092 Score=53.38 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=35.8
Q ss_pred CceeechhhHHHHHHHHhCC--------CccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 182 GEVCGRVEEKNELLSKLLCE--------SSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..++|.++.+..+.-.+... .-.....++.|.++|++|+|||++|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35788888887776655432 0001123467899999999999999999863
No 406
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.49 E-value=0.033 Score=50.78 Aligned_cols=118 Identities=19% Similarity=0.180 Sum_probs=56.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCC---CCCccHHHHHHHHHHHhCC
Q 045152 211 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSA---SGLSEFESLMKQIQEYITR 287 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~---~~~~~~~~l~~~l~~~l~~ 287 (533)
++.|+|+.|.||||+.+.+.-.. +-.+-.+.+|-. . .. ......++..++... ........-...+...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G~~v~a~--~-~~-~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIGSFVPAE--S-AE-LPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHHhCCCeeeh--h-eE-ecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 46799999999999998887321 111111111110 0 00 000111111111111 1111222223334444433
Q ss_pred --ceEEEEEeCCCCCC-ccccch----hhhcccCCCCCceEEEEecchHHHhhh
Q 045152 288 --KKFFLVLDDVWDGD-YKKWNP----FFSCLKNGHHESKILITTRDRSVALQL 334 (533)
Q Consensus 288 --kr~LlVLDdv~~~~-~~~~~~----l~~~l~~~~~gs~IiiTtR~~~v~~~~ 334 (533)
++-|+++|+.-..- ...-.. +...+.. ..++.+|++|...++....
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 78899999985431 111111 2222222 1367799999988776654
No 407
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.48 E-value=0.037 Score=50.44 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999863
No 408
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.47 E-value=0.12 Score=48.69 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=29.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcchh-----hhccCCceEEEEeCCchhHHHHHHHHHH
Q 045152 211 VISLVGLGGIGKTTLAQLAYNNDE-----VKRNFEKVIWVCVSDTFEEIRVAKAIIE 262 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~-----~~~~F~~~~wv~vs~~~~~~~l~~~il~ 262 (533)
+..|+|++|.||||++..+..... ....-...+-++...+..+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 788999999999987755554320 1133445555555555555555555554
No 409
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.46 E-value=0.083 Score=52.97 Aligned_cols=63 Identities=22% Similarity=0.184 Sum_probs=45.4
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 258 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 258 (533)
.++|+++....+...+... +.+.+.|++|+|||+||+.+... .. ...++|.+.......++.-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcC
Confidence 4788888888877777644 35889999999999999999863 22 3345666666666655443
No 410
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.46 E-value=0.026 Score=49.02 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998886
No 411
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.45 E-value=0.22 Score=51.82 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=53.1
Q ss_pred CeEEEEEEcCCCChHHHHH-HHHhcchhhh-----ccCCceEEEEeCCchhHHHHHHHHHHHhCC-C-------CCCCcc
Q 045152 208 GLHVISLVGLGGIGKTTLA-QLAYNNDEVK-----RNFEKVIWVCVSDTFEEIRVAKAIIEGLGV-S-------ASGLSE 273 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~l~~~il~~l~~-~-------~~~~~~ 273 (533)
+..-++|.|..|+|||+|| ..+.+...+. .+-..++++.+.+......-+.+.+++-+. + ..+...
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4567899999999999997 6666653221 244578888888766543334444444331 1 011111
Q ss_pred HH-----HHHHHHHHHh--CCceEEEEEeCC
Q 045152 274 FE-----SLMKQIQEYI--TRKKFFLVLDDV 297 (533)
Q Consensus 274 ~~-----~l~~~l~~~l--~~kr~LlVLDdv 297 (533)
.. -....+.+++ +++..|+|+||+
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 11 1112233333 578999999999
No 412
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.43 E-value=0.074 Score=49.18 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcch
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNND 233 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 233 (533)
....|+|+|.+|+|||||...+....
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 45689999999999999999888753
No 413
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.43 E-value=0.057 Score=51.80 Aligned_cols=62 Identities=27% Similarity=0.283 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHH
Q 045152 192 NELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVA 257 (533)
Q Consensus 192 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~ 257 (533)
.+++..+... .++..+|+|.|.||+|||||...+-....-+.+--.++=|.=|.+++--.++
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 4455555433 3678899999999999999998877643223332233334445555544443
No 414
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=94.42 E-value=0.0099 Score=59.13 Aligned_cols=84 Identities=19% Similarity=0.113 Sum_probs=51.6
Q ss_pred ccccceEEEeecCCc----ccCCccccccCccceeecccCCCCC-----CCCCccCCCCCCCcceEEeccCCCCCC----
Q 045152 420 MPCLSVLRVYLCPKL----KVLPDYLLQTTTLQKLRILQCPSME-----ELPILEDHIFLPRLSSLRIEYCPKLKL---- 486 (533)
Q Consensus 420 lp~L~~L~l~~c~~l----~~lp~~l~~l~~L~~L~l~~~~~l~-----~lp~~~~~~~l~~L~~L~l~~C~~l~~---- 486 (533)
++.|+.|++++|.-- ..++..+...++|++|++++|. +. .++ ..+..+++|++|++++|+ +..
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~--~~~~~~~~L~~L~ls~n~-l~~~~~~ 239 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALA--ETLASLKSLEVLNLGDNN-LTDAGAA 239 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHH--HHhcccCCCCEEecCCCc-CchHHHH
Confidence 346788888775422 2344444555788888888775 33 223 345567888889988874 432
Q ss_pred -CCcCC-CCCCCcceeeccCCch
Q 045152 487 -LPDSL-LQITTLKELGMEGSPL 507 (533)
Q Consensus 487 -lP~~~-~~l~~L~~L~~~~c~~ 507 (533)
+...+ .+.+.|++|++++|..
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCC
Confidence 11111 1247888898888864
No 415
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=94.41 E-value=0.014 Score=60.53 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=0.0
Q ss_pred cccceEEEeecCCcccCCccccc-------------------------cCccceeeccc---CCCCCCCCCccCCCCCCC
Q 045152 421 PCLSVLRVYLCPKLKVLPDYLLQ-------------------------TTTLQKLRILQ---CPSMEELPILEDHIFLPR 472 (533)
Q Consensus 421 p~L~~L~l~~c~~l~~lp~~l~~-------------------------l~~L~~L~l~~---~~~l~~lp~~~~~~~l~~ 472 (533)
+.|+.|++++ ..+..++++-.. +.+|+.|+|.. ...++.-. .-+..|++
T Consensus 317 qkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa--~~f~gl~~ 393 (873)
T KOG4194|consen 317 QKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA--VAFNGLPS 393 (873)
T ss_pred ccceeEeccc-cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch--hhhccchh
Q ss_pred cceEEeccCCCCCCCC-cCCCCCCCcceeeccCCchhHHhhccCCCCCCcccccCCcccccC
Q 045152 473 LSSLRIEYCPKLKLLP-DSLLQITTLKELGMEGSPLLEKRYEEGKGEDWRKISHIPHIMRSA 533 (533)
Q Consensus 473 L~~L~l~~C~~l~~lP-~~~~~l~~L~~L~~~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 533 (533)
|+.|.+.| .+||.+| .-+..|.+|++|++-++++-.=+..+ +.+| |...+++++
T Consensus 394 LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nA-----Fe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 394 LRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNA-----FEPM-ELKELVMNS 448 (873)
T ss_pred hhheeecC-ceeeecchhhhccCcccceecCCCCcceeecccc-----cccc-hhhhhhhcc
No 416
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.40 E-value=0.037 Score=49.41 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...+.|.|++|+|||||++.++++
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468899999999999999999975
No 417
>PF13245 AAA_19: Part of AAA domain
Probab=94.40 E-value=0.1 Score=39.71 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=16.9
Q ss_pred eEEEEEEcCCCChHHHHH-HHHhc
Q 045152 209 LHVISLVGLGGIGKTTLA-QLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA-~~v~~ 231 (533)
.+++.|.|++|.|||+++ +.+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357888999999999555 44443
No 418
>PHA02774 E1; Provisional
Probab=94.40 E-value=0.12 Score=54.49 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC
Q 045152 191 KNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 248 (533)
Q Consensus 191 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 248 (533)
...+..+|. +.++...+.|+|++|.|||.+|-.+.+- . .-..+.||+..
T Consensus 421 l~~lk~~l~-----~~PKknciv~~GPP~TGKS~fa~sL~~~--L--~G~vi~fvN~~ 469 (613)
T PHA02774 421 LTALKDFLK-----GIPKKNCLVIYGPPDTGKSMFCMSLIKF--L--KGKVISFVNSK 469 (613)
T ss_pred HHHHHHHHh-----cCCcccEEEEECCCCCCHHHHHHHHHHH--h--CCCEEEEEECc
Confidence 345555552 2245569999999999999999888762 1 12345677653
No 419
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.40 E-value=0.028 Score=50.26 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 045152 212 ISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~ 232 (533)
|.|.|.+|+|||||++.+.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999998864
No 420
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.39 E-value=0.2 Score=51.52 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=51.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCch-hHHHHHHHHHHHhCCC-------CCCCccHH----
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVAKAIIEGLGVS-------ASGLSEFE---- 275 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~-------~~~~~~~~---- 275 (533)
....++|+|..|+|||||++.+... ...+.++++-+.+.. .+.++..+++..-+.. ..+.....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~----~~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRG----TTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccC----CCCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 4467999999999999999999863 122455566565543 3455666554432111 11111111
Q ss_pred -HHHHHHHHHh--CCceEEEEEeCC
Q 045152 276 -SLMKQIQEYI--TRKKFFLVLDDV 297 (533)
Q Consensus 276 -~l~~~l~~~l--~~kr~LlVLDdv 297 (533)
...-.+.+++ +++.+|+++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1122233444 579999999999
No 421
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.39 E-value=0.033 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999763
No 422
>PF13479 AAA_24: AAA domain
Probab=94.38 E-value=0.16 Score=47.35 Aligned_cols=21 Identities=43% Similarity=0.360 Sum_probs=18.4
Q ss_pred eEEEEEEcCCCChHHHHHHHH
Q 045152 209 LHVISLVGLGGIGKTTLAQLA 229 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v 229 (533)
.-.+.|+|.+|+||||+|..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 356889999999999999876
No 423
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.38 E-value=0.029 Score=48.34 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 045152 212 ISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~ 232 (533)
|+|+|+.|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999863
No 424
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.38 E-value=0.32 Score=48.32 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
....++.++|++|+||||++..+...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35689999999999999999888753
No 425
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.37 E-value=0.08 Score=56.31 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=37.8
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.+++|....++++.+.+.... .....|.|.|..|.||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 358999998888888775433 23457899999999999999999874
No 426
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.36 E-value=0.062 Score=54.24 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=46.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhh----hccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEV----KRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQ 282 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~ 282 (533)
..++-+-|+|..|.|||.|.-.+|+...+ +-||.. =+.++.+.+-..- ..... ...+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~----------Fm~~vh~~l~~~~----~~~~~----l~~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHE----------FMLDVHSRLHQLR----GQDDP----LPQVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccH----------HHHHHHHHHHHHh----CCCcc----HHHHH
Confidence 45788999999999999999999986433 224321 1223333333222 11112 23344
Q ss_pred HHhCCceEEEEEeCCCCC
Q 045152 283 EYITRKKFFLVLDDVWDG 300 (533)
Q Consensus 283 ~~l~~kr~LlVLDdv~~~ 300 (533)
+.+.++..||.||++.-.
T Consensus 122 ~~l~~~~~lLcfDEF~V~ 139 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVT 139 (362)
T ss_pred HHHHhcCCEEEEeeeecc
Confidence 555667779999998543
No 427
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.32 E-value=0.032 Score=49.10 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 045152 211 VISLVGLGGIGKTTLAQLAY 230 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~ 230 (533)
.|+|.|.+|+||||++..+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 48999999999999998876
No 428
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.31 E-value=0.024 Score=62.13 Aligned_cols=83 Identities=22% Similarity=0.199 Sum_probs=43.1
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCC-------cCCC
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLP-------DSLL 492 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP-------~~~~ 492 (533)
+|+|..|++|. +++..+ .++..|++|+.|.+.+.+ ++.-+.+.++..|++|+.|++|. .+-..-| +.-.
T Consensus 172 FpNL~sLDIS~-TnI~nl-~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~-~~~~~~~~ii~qYlec~~ 247 (699)
T KOG3665|consen 172 FPNLRSLDISG-TNISNL-SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISR-DKNNDDTKIIEQYLECGM 247 (699)
T ss_pred cCccceeecCC-CCccCc-HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccc-cccccchHHHHHHHHhcc
Confidence 45555555555 444444 345555666665555443 33333334555677777777765 3322222 1122
Q ss_pred CCCCcceeeccCCc
Q 045152 493 QITTLKELGMEGSP 506 (533)
Q Consensus 493 ~l~~L~~L~~~~c~ 506 (533)
.|++|+.||++|+-
T Consensus 248 ~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 248 VLPELRFLDCSGTD 261 (699)
T ss_pred cCccccEEecCCcc
Confidence 36677777777664
No 429
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.29 E-value=0.18 Score=55.63 Aligned_cols=85 Identities=21% Similarity=0.182 Sum_probs=56.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC-----CCccHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS-----GLSEFESLMKQI 281 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l 281 (533)
+..+++-|.|++|+|||||+.++... ....-..++||.....++. ..+++++.... .....+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 46788999999999999999776542 2233356889988777764 25666665421 122334455555
Q ss_pred HHHhC-CceEEEEEeCCC
Q 045152 282 QEYIT-RKKFFLVLDDVW 298 (533)
Q Consensus 282 ~~~l~-~kr~LlVLDdv~ 298 (533)
...++ ++.-|+|+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 356789999984
No 430
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.29 E-value=0.4 Score=46.65 Aligned_cols=59 Identities=8% Similarity=0.082 Sum_probs=39.9
Q ss_pred CceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecc-hHHHhh-hCCCCeeeCCCC
Q 045152 287 RKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRD-RSVALQ-LGSIDIIPVKEL 345 (533)
Q Consensus 287 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~-~~v~~~-~~~~~~~~l~~L 345 (533)
++.-++|+|+++..+.+.+..++..+.....++.+|++|.+ ..+... ......+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 45568899999888878888888888776667777666665 444322 223455666544
No 431
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.27 E-value=0.0087 Score=63.50 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=62.7
Q ss_pred ccccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCc
Q 045152 418 SIMPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTL 497 (533)
Q Consensus 418 ~ilp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L 497 (533)
..+|+++.|++++ ..+...- .+..++.|++|+|+ .+.|..+|-+.. --..|+.|+|+| +.|++|- ++.+|++|
T Consensus 184 qll~ale~LnLsh-Nk~~~v~-~Lr~l~~LkhLDls-yN~L~~vp~l~~--~gc~L~~L~lrn-N~l~tL~-gie~LksL 256 (1096)
T KOG1859|consen 184 QLLPALESLNLSH-NKFTKVD-NLRRLPKLKHLDLS-YNCLRHVPQLSM--VGCKLQLLNLRN-NALTTLR-GIENLKSL 256 (1096)
T ss_pred HHHHHhhhhccch-hhhhhhH-HHHhcccccccccc-cchhccccccch--hhhhheeeeecc-cHHHhhh-hHHhhhhh
Confidence 3578899999988 4444444 67788999999998 566888884222 234599999999 7888888 79999999
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
+.||++.+-
T Consensus 257 ~~LDlsyNl 265 (1096)
T KOG1859|consen 257 YGLDLSYNL 265 (1096)
T ss_pred hccchhHhh
Confidence 999987653
No 432
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.35 Score=45.54 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=55.3
Q ss_pred ceeechhhHHHHHHHHhCCCcc-------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSE-------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
++=|=.++++++.+.....--+ +-+.+.-|.++|++|.|||-+|+.|.| +....| |.|-..
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf-----irvigs----- 245 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF-----IRVIGS----- 245 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE-----EeehhH-----
Confidence 3456677788877754221100 123566788999999999999999998 343333 333221
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCC-ceEEEEEeCCCC
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITR-KKFFLVLDDVWD 299 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~-kr~LlVLDdv~~ 299 (533)
++....-+ +.......+.+..+. |-++|.+|.++.
T Consensus 246 ---elvqkyvg------egarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 246 ---ELVQKYVG------EGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred ---HHHHHHhh------hhHHHHHHHHHHhcccceEEEEeecccc
Confidence 11111111 112344455555555 568888998843
No 433
>PLN02348 phosphoribulokinase
Probab=94.26 E-value=0.23 Score=50.20 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
+...+|+|.|.+|.||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999998863
No 434
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.26 E-value=0.26 Score=51.01 Aligned_cols=90 Identities=20% Similarity=0.165 Sum_probs=54.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCch-hHHHHHHHHHHHhCCC-------CCCCccHH---
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVAKAIIEGLGVS-------ASGLSEFE--- 275 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~-------~~~~~~~~--- 275 (533)
..-.-++|+|.+|+|||||+..+..+... .+-+.++++-+.+.. .+.+++.+++..-... ..+.....
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 34568999999999999999887653211 122456677665543 4566666666532111 11111111
Q ss_pred --HHHHHHHHHh---CCceEEEEEeCC
Q 045152 276 --SLMKQIQEYI---TRKKFFLVLDDV 297 (533)
Q Consensus 276 --~l~~~l~~~l---~~kr~LlVLDdv 297 (533)
...-.+.+++ +++.+|+++|++
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecch
Confidence 1223345555 678999999999
No 435
>PRK13947 shikimate kinase; Provisional
Probab=94.25 E-value=0.032 Score=50.06 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999876
No 436
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.25 E-value=0.33 Score=50.78 Aligned_cols=96 Identities=23% Similarity=0.239 Sum_probs=53.1
Q ss_pred HHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC-
Q 045152 191 KNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS- 269 (533)
Q Consensus 191 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~- 269 (533)
...+-+.|..+- ....++.|.|.+|+|||||+.++... ....-..++|++..+.. ..+... ++.++....
T Consensus 80 i~~LD~vLgGGi----~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs~--~qi~~r-a~rlg~~~~~ 150 (454)
T TIGR00416 80 FGELDRVLGGGI----VPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEESL--QQIKMR-AIRLGLPEPN 150 (454)
T ss_pred cHHHHHHhcCCc----cCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCCH--HHHHHH-HHHcCCChHH
Confidence 344545553322 45679999999999999999887653 22222357788755432 222221 233332211
Q ss_pred ----CCccHHHHHHHHHHHhCCceEEEEEeCCC
Q 045152 270 ----GLSEFESLMKQIQEYITRKKFFLVLDDVW 298 (533)
Q Consensus 270 ----~~~~~~~l~~~l~~~l~~kr~LlVLDdv~ 298 (533)
...+.+.+...+.+ .+.-++|+|.+-
T Consensus 151 l~~~~e~~~~~I~~~i~~---~~~~~vVIDSIq 180 (454)
T TIGR00416 151 LYVLSETNWEQICANIEE---ENPQACVIDSIQ 180 (454)
T ss_pred eEEcCCCCHHHHHHHHHh---cCCcEEEEecch
Confidence 12234444444332 355689999884
No 437
>PRK15115 response regulator GlrR; Provisional
Probab=94.25 E-value=0.072 Score=55.85 Aligned_cols=46 Identities=24% Similarity=0.208 Sum_probs=32.7
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.++|....+.++.+...... ..-..+.|.|.+|.|||++|+.+.+.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----QSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----cCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 46777777766666543322 12345779999999999999999864
No 438
>PRK13949 shikimate kinase; Provisional
Probab=94.22 E-value=0.033 Score=49.91 Aligned_cols=22 Identities=45% Similarity=0.499 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
-|.|+|++|+||||+++.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998863
No 439
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.21 E-value=0.24 Score=47.65 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=54.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhh--hccCCceEEEEeCCch-hHHHHHHHHHHHhCCC-------CCCCccHH--
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEV--KRNFEKVIWVCVSDTF-EEIRVAKAIIEGLGVS-------ASGLSEFE-- 275 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~-------~~~~~~~~-- 275 (533)
.-.-++|+|-.|+|||+|+..+.++... +.+-+.++++-+.+.. ++.+++.++...=... ..+.....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4567899999999999999888764321 1234678888887654 4556666665432111 11111111
Q ss_pred ---HHHHHHHHHh---CCceEEEEEeCC
Q 045152 276 ---SLMKQIQEYI---TRKKFFLVLDDV 297 (533)
Q Consensus 276 ---~l~~~l~~~l---~~kr~LlVLDdv 297 (533)
.....+.+++ .++++|+++||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1222344444 368999999999
No 440
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.20 E-value=0.028 Score=62.76 Aligned_cols=176 Identities=19% Similarity=0.164 Sum_probs=79.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC---CCccHHHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS---GLSEFESLMKQIQEY 284 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~---~~~~~~~l~~~l~~~ 284 (533)
..+++.|+|+.+.||||+.+.+.-.. + ....-++|.+... ....++..|+..++.... ....+..-...+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~-~--maq~G~~vpa~~~-~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAA-L--MAKSGLPIPANEP-SEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHH-H--HHHhCCCcccCCC-ccccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 45789999999999999998885321 0 0011112222110 001111112212221110 111111112222222
Q ss_pred hC--CceEEEEEeCCCCCC-ccccchh----hhcccCCCCCceEEEEecchHHHhhhCCCCeeeCCCCCh-HhhHHHHHH
Q 045152 285 IT--RKKFFLVLDDVWDGD-YKKWNPF----FSCLKNGHHESKILITTRDRSVALQLGSIDIIPVKELAE-EECWSLLER 356 (533)
Q Consensus 285 l~--~kr~LlVLDdv~~~~-~~~~~~l----~~~l~~~~~gs~IiiTtR~~~v~~~~~~~~~~~l~~L~~-~~~~~Lf~~ 356 (533)
+. ..+-|++||...... ......+ ...+. ..|+.+|+||....+.........+.-..+.. ++... +..
T Consensus 402 l~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~-~~Y 478 (782)
T PRK00409 402 LEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDEETLR-PTY 478 (782)
T ss_pred HHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCc-EEE
Confidence 22 477899999986432 1222223 22222 24788999999987766543311111000000 01100 000
Q ss_pred hhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHHhhc
Q 045152 357 LAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLLRS 397 (533)
Q Consensus 357 ~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~ 397 (533)
....| . .-...|-+|++++ |+|-.+..-|.-+-.
T Consensus 479 kl~~G----~--~g~S~a~~iA~~~-Glp~~ii~~A~~~~~ 512 (782)
T PRK00409 479 RLLIG----I--PGKSNAFEIAKRL-GLPENIIEEAKKLIG 512 (782)
T ss_pred EEeeC----C--CCCcHHHHHHHHh-CcCHHHHHHHHHHHh
Confidence 00000 0 1144577777776 788888777765543
No 441
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.20 E-value=0.12 Score=49.36 Aligned_cols=77 Identities=21% Similarity=0.184 Sum_probs=42.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchh--HHHHHHHHHHH----hCCCC--CCCccHHHHHHHHH
Q 045152 211 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE--EIRVAKAIIEG----LGVSA--SGLSEFESLMKQIQ 282 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~l~~~il~~----l~~~~--~~~~~~~~l~~~l~ 282 (533)
+|+|.|.+|+||||+++.+... ....-..+..++...-+. -...-..+... ..... ++..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~--l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI--FAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 5899999999999999988753 221111244454332222 11222222221 12222 34556777777887
Q ss_pred HHhCCce
Q 045152 283 EYITRKK 289 (533)
Q Consensus 283 ~~l~~kr 289 (533)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7776553
No 442
>PRK05973 replicative DNA helicase; Provisional
Probab=94.19 E-value=0.25 Score=46.64 Aligned_cols=50 Identities=22% Similarity=0.134 Sum_probs=32.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 260 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 260 (533)
....++.|.|.+|+|||+++.++.... .+. -..+++++.... ..++...+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~-a~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEA-MKS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH-Hhc-CCeEEEEEEeCC--HHHHHHHH
Confidence 355689999999999999997765432 232 345666665543 34444443
No 443
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.19 E-value=0.3 Score=50.38 Aligned_cols=86 Identities=17% Similarity=0.221 Sum_probs=50.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCch-hHHHHHHHHHHHhCCC-------CCCCccHH----
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVAKAIIEGLGVS-------ASGLSEFE---- 275 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~-------~~~~~~~~---- 275 (533)
....++|+|..|+|||||++.+.+.. ..+.++++-+.+.. .+.++..+.+..-+.. ..+.....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 45688999999999999999998642 22445555555543 3445554444432211 11111111
Q ss_pred -HHHHHHHHHh--CCceEEEEEeCC
Q 045152 276 -SLMKQIQEYI--TRKKFFLVLDDV 297 (533)
Q Consensus 276 -~l~~~l~~~l--~~kr~LlVLDdv 297 (533)
...-.+.+++ .++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1222234444 578999999999
No 444
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.18 E-value=0.014 Score=60.26 Aligned_cols=80 Identities=24% Similarity=0.317 Sum_probs=58.1
Q ss_pred ccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcceee
Q 045152 422 CLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKELG 501 (533)
Q Consensus 422 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~L~ 501 (533)
.|+.|+++. ..+..+|..+..+++|+.|++++++ +..+| ...+.+++|+.|++++ .++..+|..+..+..|++|.
T Consensus 141 nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~--~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 141 NLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND-LSDLP--KLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELD 215 (394)
T ss_pred hcccccccc-cchhhhhhhhhccccccccccCCch-hhhhh--hhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhh
Confidence 577777776 6667777777778888888888666 77777 4444677888888877 67888887665566677777
Q ss_pred ccCCc
Q 045152 502 MEGSP 506 (533)
Q Consensus 502 ~~~c~ 506 (533)
+++.+
T Consensus 216 ~~~N~ 220 (394)
T COG4886 216 LSNNS 220 (394)
T ss_pred hcCCc
Confidence 77663
No 445
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.17 E-value=0.045 Score=44.58 Aligned_cols=22 Identities=36% Similarity=0.339 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHh
Q 045152 209 LHVISLVGLGGIGKTTLAQLAY 230 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~ 230 (533)
-..++|+|+.|.|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999876
No 446
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.16 E-value=0.35 Score=48.74 Aligned_cols=89 Identities=25% Similarity=0.290 Sum_probs=47.1
Q ss_pred CeEEEEEEcCCCChHHH-HHHHHhcchhhhccCCceEEEEeCC-chhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh
Q 045152 208 GLHVISLVGLGGIGKTT-LAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI 285 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l 285 (533)
+.++|.+||+.|+|||| ||+....-. ....-..+..|+... .....+-++...+-++.+-....+..++...+.. +
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~-l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA-L 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH-h
Confidence 37899999999999975 555544321 122334566666432 1233344444455555543333344444444432 2
Q ss_pred CCceEEEEEeCCCC
Q 045152 286 TRKKFFLVLDDVWD 299 (533)
Q Consensus 286 ~~kr~LlVLDdv~~ 299 (533)
++. =+|.+|-+..
T Consensus 280 ~~~-d~ILVDTaGr 292 (407)
T COG1419 280 RDC-DVILVDTAGR 292 (407)
T ss_pred hcC-CEEEEeCCCC
Confidence 233 4566676654
No 447
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.14 E-value=0.04 Score=51.27 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|..|.|||||++.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 456899999999999999999853
No 448
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.10 E-value=0.22 Score=52.05 Aligned_cols=84 Identities=24% Similarity=0.298 Sum_probs=49.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC-----CCccHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS-----GLSEFESLMKQI 281 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l 281 (533)
....++.|.|.+|+|||||+.++.... ...-..++|++..+.. ..+... ++.++.... ...+.+.+...+
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~--a~~g~~vlYvs~Ees~--~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARL--AAAGGKVLYVSGEESA--SQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccccH--HHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 346799999999999999998887642 2223456787765433 233222 344443211 113344444444
Q ss_pred HHHhCCceEEEEEeCCC
Q 045152 282 QEYITRKKFFLVLDDVW 298 (533)
Q Consensus 282 ~~~l~~kr~LlVLDdv~ 298 (533)
.+ .+.-++|+|.+.
T Consensus 153 ~~---~~~~lVVIDSIq 166 (446)
T PRK11823 153 EE---EKPDLVVIDSIQ 166 (446)
T ss_pred Hh---hCCCEEEEechh
Confidence 32 355689999984
No 449
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.10 E-value=0.32 Score=46.23 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=35.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEG 263 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~ 263 (533)
...++.|.|.+|+|||+++..+..+. ...+=..++|++... +..++...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~-~~~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENI-AKKQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 45789999999999999998776542 223234567776544 445566665543
No 450
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.09 E-value=0.15 Score=48.96 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=49.0
Q ss_pred CeEEEEEEcCCCChHHHHH-HHHhcchhhhccCCce-EEEEeCCch-hHHHHHHHHHHHhCCC-------CCCCccHHH-
Q 045152 208 GLHVISLVGLGGIGKTTLA-QLAYNNDEVKRNFEKV-IWVCVSDTF-EEIRVAKAIIEGLGVS-------ASGLSEFES- 276 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~l~~~il~~l~~~-------~~~~~~~~~- 276 (533)
+-.-++|+|..|+|||+|| +.+.+. .+-+.+ +++-+.+.. .+.++.+++...-... ..+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 4567899999999999996 656542 123444 566666553 4556666665432111 111111111
Q ss_pred ----HHHHHHHHh--CCceEEEEEeCC
Q 045152 277 ----LMKQIQEYI--TRKKFFLVLDDV 297 (533)
Q Consensus 277 ----l~~~l~~~l--~~kr~LlVLDdv 297 (533)
..-.+.+++ +++.+|+++||+
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 112223333 578999999999
No 451
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.45 Score=42.66 Aligned_cols=53 Identities=9% Similarity=0.080 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCCCc-cccchhhhccc-CCCCCceEEEEecch
Q 045152 276 SLMKQIQEYITRKKFFLVLDDVWDGDY-KKWNPFFSCLK-NGHHESKILITTRDR 328 (533)
Q Consensus 276 ~l~~~l~~~l~~kr~LlVLDdv~~~~~-~~~~~l~~~l~-~~~~gs~IiiTtR~~ 328 (533)
+..-.+.+..-.++-|-+||+....-. +.-..+...+. ....|..||.||-.+
T Consensus 136 qRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 136 QRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 334445566678889999999854311 11122222222 345677788888755
No 452
>PRK15453 phosphoribulokinase; Provisional
Probab=94.04 E-value=0.3 Score=47.12 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=42.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCch--hHHHHHHHHH--HHh--CCCC--CCCccHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF--EEIRVAKAII--EGL--GVSA--SGLSEFESLMK 279 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~l~~~il--~~l--~~~~--~~~~~~~~l~~ 279 (533)
...+|+|.|.+|+||||+|+.+.+. ....-...+.++...-+ +-...-..+. +.- +... ++..+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i--f~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI--FRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 4579999999999999999988742 21111123444433222 2222222111 111 1122 34556777777
Q ss_pred HHHHHhCC
Q 045152 280 QIQEYITR 287 (533)
Q Consensus 280 ~l~~~l~~ 287 (533)
.++.+..+
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 77776653
No 453
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.03 E-value=0.19 Score=52.21 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=55.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCch-hHHHHHHHHHHHhCCC-------CCCCccH----
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVAKAIIEGLGVS-------ASGLSEF---- 274 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~-------~~~~~~~---- 274 (533)
..-.-++|+|.+|+|||||+..+.+... +.+-+.++++-+.+.. .+.++..++...-... ..+....
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 3456899999999999999988776422 2356777787776543 4456666665432111 1111111
Q ss_pred -HHHHHHHHHHh---CCceEEEEEeCC
Q 045152 275 -ESLMKQIQEYI---TRKKFFLVLDDV 297 (533)
Q Consensus 275 -~~l~~~l~~~l---~~kr~LlVLDdv 297 (533)
......+.+++ .++.+|+++||+
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 12223344555 378999999999
No 454
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.03 E-value=0.055 Score=52.30 Aligned_cols=23 Identities=39% Similarity=0.319 Sum_probs=17.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 36889999999999999988863
No 455
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.02 E-value=0.038 Score=48.45 Aligned_cols=20 Identities=45% Similarity=0.697 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 045152 212 ISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~ 231 (533)
|.|+|++|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999975
No 456
>PRK14530 adenylate kinase; Provisional
Probab=94.01 E-value=0.038 Score=51.71 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 457
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.98 E-value=0.13 Score=54.26 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=52.2
Q ss_pred HHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEE-EeCCch-hHHHHHHHHHHHhCCCCCC
Q 045152 193 ELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV-CVSDTF-EEIRVAKAIIEGLGVSASG 270 (533)
Q Consensus 193 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-~vs~~~-~~~~l~~~il~~l~~~~~~ 270 (533)
++++.|..- +.-.-.+|+|++|+|||||++.+.+.. ...+-++.++| -|.+.. .+.++.+.+-..+-....+
T Consensus 405 RvIDll~PI-----GkGQR~LIvgpp~aGKTtLL~~IAn~i-~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D 478 (672)
T PRK12678 405 RVIDLIMPI-----GKGQRGLIVSPPKAGKTTILQNIANAI-TTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFD 478 (672)
T ss_pred eeeeeeccc-----ccCCEeEEeCCCCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCC
Confidence 455555432 345678999999999999999988731 12233444433 344432 2333322221111111111
Q ss_pred Cc-----cHHHHHHHHHHHh--CCceEEEEEeCC
Q 045152 271 LS-----EFESLMKQIQEYI--TRKKFFLVLDDV 297 (533)
Q Consensus 271 ~~-----~~~~l~~~l~~~l--~~kr~LlVLDdv 297 (533)
.. ....+.-.+.+++ .++.+||++|++
T Consensus 479 ~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 479 RPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 11 1122333344444 678999999999
No 458
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.97 E-value=0.048 Score=50.13 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998863
No 459
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.96 E-value=0.11 Score=56.52 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=33.5
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.+++|.++.++.+...+... ..+.++|++|+||||+|+.+.+.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~ 60 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAEL 60 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHH
Confidence 46889988887777766421 25669999999999999999863
No 460
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.96 E-value=0.035 Score=49.39 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 045152 212 ISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~ 231 (533)
|.|+|++|+||||+|+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999998876
No 461
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.95 E-value=0.24 Score=44.87 Aligned_cols=119 Identities=17% Similarity=0.067 Sum_probs=62.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC---chhHHHHHHHHH--HH--hCCC----C-CCCcc--
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD---TFEEIRVAKAII--EG--LGVS----A-SGLSE-- 273 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~l~~~il--~~--l~~~----~-~~~~~-- 273 (533)
....|.|+|..|-||||.|.-+.-. .....+ .+..+.+-. ......++..+- .- .+.. . ....+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~r-a~g~G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALR-AVGHGK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHH-HHHCCC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 3468899999999999999655432 112222 233333221 223333333310 00 0100 0 00011
Q ss_pred -HHHHHHHHHHHhC-CceEEEEEeCCCC---CCccccchhhhcccCCCCCceEEEEecch
Q 045152 274 -FESLMKQIQEYIT-RKKFFLVLDDVWD---GDYKKWNPFFSCLKNGHHESKILITTRDR 328 (533)
Q Consensus 274 -~~~l~~~l~~~l~-~kr~LlVLDdv~~---~~~~~~~~l~~~l~~~~~gs~IiiTtR~~ 328 (533)
.....+..++.+. ++-=|+|||.+-. ...-..+++...+.....+.-||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1223333444444 4556999999832 12234556667776666678899999975
No 462
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=93.95 E-value=0.27 Score=41.56 Aligned_cols=36 Identities=22% Similarity=0.063 Sum_probs=24.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE
Q 045152 211 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 246 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 246 (533)
.+.|.|+.|.|||+.+................+|++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 467999999999999977765432222345556654
No 463
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.93 E-value=0.048 Score=50.70 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.++++|+++|..|+|||||.+++...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999988763
No 464
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.93 E-value=0.066 Score=56.69 Aligned_cols=59 Identities=25% Similarity=0.275 Sum_probs=42.5
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 246 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 246 (533)
+++--.+-++++..||..... +....+++.+.|++|+||||.++.+.+. -.|+.+-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 344445677888888865432 2234579999999999999999999863 3566677765
No 465
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.90 E-value=0.97 Score=54.19 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.++-|.++|++|.|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 4668899999999999999999975
No 466
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.89 E-value=0.22 Score=51.23 Aligned_cols=88 Identities=23% Similarity=0.220 Sum_probs=50.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCC-------CCCCcc-----HH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVS-------ASGLSE-----FE 275 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~-------~~~~~~-----~~ 275 (533)
....++|+|..|.|||||++.+..... ....++...-.....+.+++...+..-+.. ..+... ..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 456889999999999999999886422 112233222223355666666555442211 111111 11
Q ss_pred HHHHHHHHHh--CCceEEEEEeCCC
Q 045152 276 SLMKQIQEYI--TRKKFFLVLDDVW 298 (533)
Q Consensus 276 ~l~~~l~~~l--~~kr~LlVLDdv~ 298 (533)
.....+.+++ +++..|+++||+-
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchH
Confidence 2222333444 4789999999993
No 467
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.89 E-value=0.12 Score=54.55 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=35.8
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.++|+...+.++.+.+.... .....+.|+|.+|+|||++|+.++..
T Consensus 139 ~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 58998888888777664322 23456889999999999999999874
No 468
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.88 E-value=0.052 Score=47.40 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999987765
No 469
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.88 E-value=0.33 Score=44.40 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..|+|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 470
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.88 E-value=0.089 Score=57.05 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=50.3
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+++|.++-++.+...+... +.+.++|++|+||||+|+.+.+. -...+++..+|+.-+ ..+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~np-~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPNP-EDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeCC-CcchHHHHHHHH
Confidence 35889888888777766321 36889999999999999998863 223345777886643 334555555555
Q ss_pred HHhC
Q 045152 262 EGLG 265 (533)
Q Consensus 262 ~~l~ 265 (533)
.+++
T Consensus 101 ~~~G 104 (637)
T PRK13765 101 AGKG 104 (637)
T ss_pred HhcC
Confidence 4443
No 471
>PRK13975 thymidylate kinase; Provisional
Probab=93.87 E-value=0.047 Score=50.16 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 472
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.86 E-value=0.12 Score=45.66 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+..+|-+.|.+|.||||+|..++.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHH
Confidence 4567999999999999999999986
No 473
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.85 E-value=0.069 Score=48.55 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=26.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 250 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 250 (533)
++.|.|++|+|||+||.++.... .+ .=..++|++....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~-~~-~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG-LA-RGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH-HH-CCCcEEEEECCCC
Confidence 36799999999999998776532 22 2245778876543
No 474
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=93.83 E-value=0.17 Score=45.77 Aligned_cols=52 Identities=21% Similarity=0.121 Sum_probs=28.9
Q ss_pred EEEEEEcCCCChHHH-HHHHHhcchhhhccC-CceEEEEeCCchhHHHHHHHHHHHh
Q 045152 210 HVISLVGLGGIGKTT-LAQLAYNNDEVKRNF-EKVIWVCVSDTFEEIRVAKAIIEGL 264 (533)
Q Consensus 210 ~vi~I~G~gGiGKTt-LA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~l~~~il~~l 264 (533)
..+.|.|..|.|||+ ++..++.. ..... ...+++ +....-...+...+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~--~~~~~~~~~l~~-~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEA--LKRGKGKRVLVL-VPTRELAEQWAEELKKLG 78 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHH--hcccCCCcEEEE-eCCHHHHHHHHHHHHHHh
Confidence 678999999999999 44555542 22221 234444 333333344444444433
No 475
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.83 E-value=0.38 Score=47.70 Aligned_cols=86 Identities=17% Similarity=0.221 Sum_probs=48.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC-CchhHHHHHHHHHHHhCCC-------CCCCccH-----
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS-DTFEEIRVAKAIIEGLGVS-------ASGLSEF----- 274 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~l~~~il~~l~~~-------~~~~~~~----- 274 (533)
....++|+|..|.|||||.+.+..... -+..+...+. ..-++.++....+..-... ..+....
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 346789999999999999998886421 2233333333 2334555555554432211 1111111
Q ss_pred HHHHHHHHHHh--CCceEEEEEeCC
Q 045152 275 ESLMKQIQEYI--TRKKFFLVLDDV 297 (533)
Q Consensus 275 ~~l~~~l~~~l--~~kr~LlVLDdv 297 (533)
....-.+.+++ +++.+|+++||+
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccc
Confidence 11122233333 578999999998
No 476
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.82 E-value=0.048 Score=49.06 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..|.|+|+.|.||||+++.+.+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999999863
No 477
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.80 E-value=0.11 Score=43.42 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=28.9
Q ss_pred hHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 190 EKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 190 e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
-.+.|...+... ...++-|++.+|.+|+|||.+++.+.+.
T Consensus 37 v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 37 VVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 344555555443 3467899999999999999988776653
No 478
>PRK14527 adenylate kinase; Provisional
Probab=93.79 E-value=0.049 Score=49.89 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+|.|+|++|+||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998875
No 479
>PRK08149 ATP synthase SpaL; Validated
Probab=93.78 E-value=0.24 Score=50.91 Aligned_cols=86 Identities=15% Similarity=0.241 Sum_probs=49.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC-chhHHHHHHHHHHHhCCC-------CCCCccH-----
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGVS-------ASGLSEF----- 274 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~il~~l~~~-------~~~~~~~----- 274 (533)
+...++|+|..|+|||||...+.... .-+.++...+.. ..++.++..+.+...... ..+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 45689999999999999999988632 223333333332 234555656665532211 1111111
Q ss_pred HHHHHHHHHHh--CCceEEEEEeCC
Q 045152 275 ESLMKQIQEYI--TRKKFFLVLDDV 297 (533)
Q Consensus 275 ~~l~~~l~~~l--~~kr~LlVLDdv 297 (533)
......+.+++ .++.+|+++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 11222233333 579999999999
No 480
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.76 E-value=0.13 Score=47.03 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 481
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.73 E-value=0.081 Score=48.46 Aligned_cols=42 Identities=33% Similarity=0.420 Sum_probs=29.2
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+++|-+.-+..+.-... ...-+.++|++|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAa--------G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA--------GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH--------CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHc--------CCCCeEEECCCCCCHHHHHHHHHH
Confidence 357787776666655553 235799999999999999998853
No 482
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=93.70 E-value=0.021 Score=59.02 Aligned_cols=81 Identities=27% Similarity=0.432 Sum_probs=68.7
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
+..|.+|+++. ..+..||.+++. -.|+.|-+++ +++..+| ++++.++.|..|+.+. .++.++|..+++|.+|+.
T Consensus 120 L~~lt~l~ls~-NqlS~lp~~lC~-lpLkvli~sN-Nkl~~lp--~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 120 LEALTFLDLSS-NQLSHLPDGLCD-LPLKVLIVSN-NKLTSLP--EEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhHHHHhhhcc-chhhcCChhhhc-CcceeEEEec-CccccCC--cccccchhHHHhhhhh-hhhhhchHHhhhHHHHHH
Confidence 55788888887 777889999886 4588998885 5599999 7899999999999977 589999999999999999
Q ss_pred eeccCCc
Q 045152 500 LGMEGSP 506 (533)
Q Consensus 500 L~~~~c~ 506 (533)
|.++.+-
T Consensus 194 l~vrRn~ 200 (722)
T KOG0532|consen 194 LNVRRNH 200 (722)
T ss_pred HHHhhhh
Confidence 9987664
No 483
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.67 E-value=0.061 Score=51.09 Aligned_cols=33 Identities=27% Similarity=0.248 Sum_probs=21.1
Q ss_pred EEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC
Q 045152 214 LVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 248 (533)
Q Consensus 214 I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 248 (533)
|+||+|+||||+++.+.+.. ..+-..++-|+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~--~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL--ESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH--TTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHH--HhccCCceEEEcc
Confidence 68999999999999998742 3333345556543
No 484
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.67 E-value=0.16 Score=46.07 Aligned_cols=26 Identities=38% Similarity=0.428 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
....++.|.|.+|.||||+|+.+...
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999863
No 485
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.58 Score=49.91 Aligned_cols=182 Identities=20% Similarity=0.157 Sum_probs=93.5
Q ss_pred CCceeechhhHH---HHHHHHhCCCcc---CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHH
Q 045152 181 EGEVCGRVEEKN---ELLSKLLCESSE---QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 254 (533)
Q Consensus 181 ~~~~vGR~~e~~---~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (533)
-.++-|.++.++ ++++.|.....- +..-++-+.++|++|.|||.||+++.....+- | .++|...-+
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~FV- 220 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSDFV- 220 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchhhh-
Confidence 346778776655 555566433210 11346778999999999999999999864432 2 222221100
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC----------ccccchhhhc-cc--C-CC--CC
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGD----------YKKWNPFFSC-LK--N-GH--HE 318 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~----------~~~~~~l~~~-l~--~-~~--~g 318 (533)
++.-.++ .....+.+.+..+.-++.+++|.++... .+++++.... +. + .. .|
T Consensus 221 ----emfVGvG--------AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~g 288 (596)
T COG0465 221 ----EMFVGVG--------ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEG 288 (596)
T ss_pred ----hhhcCCC--------cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCc
Confidence 1111111 1223344455556668999999885421 1233332222 21 1 12 23
Q ss_pred ceEEEEecchHHHhh--h---CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcch
Q 045152 319 SKILITTRDRSVALQ--L---GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLA 387 (533)
Q Consensus 319 s~IiiTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 387 (533)
-.|+..|..++|... + ..+..+.++.-+...-.++++-++- ...-...-++ ..|++.+-|.-.|
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~-~~~l~~~Vdl----~~iAr~tpGfsGA 357 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAK-NKPLAEDVDL----KKIARGTPGFSGA 357 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhh-cCCCCCcCCH----HHHhhhCCCcccc
Confidence 334444555555422 1 2255666666666666666665543 1111112222 2378888887766
No 486
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=93.62 E-value=0.05 Score=50.84 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.-|+|+|++|+|||||+..+..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 56889999999999999999876
No 487
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.61 E-value=0.55 Score=49.56 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...+++|+|+.|.|||||++.+..-
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999763
No 488
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.60 E-value=0.16 Score=51.77 Aligned_cols=51 Identities=20% Similarity=0.228 Sum_probs=36.4
Q ss_pred CceeechhhHHHHHHHHhCC--------CccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 182 GEVCGRVEEKNELLSKLLCE--------SSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..++|.++.+..+..++... ..........|.++|++|+|||+||+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45788888888887777431 0000112467899999999999999988763
No 489
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=93.60 E-value=0.21 Score=45.01 Aligned_cols=26 Identities=42% Similarity=0.442 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..-.-|.|.|+.|+||||+.+.+...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~ 37 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNG 37 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSS
T ss_pred CcEEEEEEECCCccchHHHHHHhhhc
Confidence 35567799999999999999999764
No 490
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.59 E-value=0.057 Score=46.29 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..+++|+|..|.|||||.+.+...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEEccCCCccccceeeeccc
Confidence 358999999999999999999763
No 491
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.57 E-value=0.24 Score=53.88 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....++|+|..|.|||||++.+..
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 446799999999999999998864
No 492
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.56 E-value=0.12 Score=51.09 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=30.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHH
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 258 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 258 (533)
.+++.+.|.||+||||+|....-. .......+.-|++....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~--lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK--LAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH--HHHcCCcEEEEEeCCCCchHhhhc
Confidence 478999999999999999774321 222224466666555554444433
No 493
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=93.56 E-value=0.56 Score=50.42 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...+++|+|+.|.|||||.+.+...
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999863
No 494
>PRK05922 type III secretion system ATPase; Validated
Probab=93.55 E-value=0.33 Score=50.02 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=48.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC-chhHHHHHHHHHHHhCCCC-------CCCccH-----
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGVSA-------SGLSEF----- 274 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~il~~l~~~~-------~~~~~~----- 274 (533)
....++|+|..|+|||||.+.+.... ..+...++.+.. ...+.+.+.+......... .+....
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 44578999999999999999998642 223334433333 2233445544443332211 111111
Q ss_pred HHHHHHHHHHh--CCceEEEEEeCC
Q 045152 275 ESLMKQIQEYI--TRKKFFLVLDDV 297 (533)
Q Consensus 275 ~~l~~~l~~~l--~~kr~LlVLDdv 297 (533)
....-.+.+++ .++.+|+++||+
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 11222344444 579999999999
No 495
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.55 E-value=0.048 Score=48.04 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
|++|+|+.|+|||||+..+...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 496
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.54 E-value=0.038 Score=60.62 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=58.4
Q ss_pred ccccccceEEEeecCCccc-CCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCC--cCCCCC
Q 045152 418 SIMPCLSVLRVYLCPKLKV-LPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLP--DSLLQI 494 (533)
Q Consensus 418 ~ilp~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP--~~~~~l 494 (533)
..+|.|+.|.+.+-.-... ...-...+++|.+||++++. +..+ .+++.|.||+.|.+++. .+.+-+ ..+-+|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS~LknLq~L~mrnL-e~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL---SGISRLKNLQVLSMRNL-EFESYQDLIDLFNL 219 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc---HHHhccccHHHHhccCC-CCCchhhHHHHhcc
Confidence 5699999999976211111 01111247899999999876 5555 48889999999999873 343333 256679
Q ss_pred CCcceeeccCCc
Q 045152 495 TTLKELGMEGSP 506 (533)
Q Consensus 495 ~~L~~L~~~~c~ 506 (533)
++|+.||||.-.
T Consensus 220 ~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 220 KKLRVLDISRDK 231 (699)
T ss_pred cCCCeeeccccc
Confidence 999999998654
No 497
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.51 E-value=0.27 Score=54.16 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....|+|+|..|.|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998854
No 498
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.51 E-value=0.23 Score=53.79 Aligned_cols=53 Identities=15% Similarity=0.050 Sum_probs=31.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhh-hccCCceEEEEeCCchhHHHHHHHHH
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEV-KRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
-++..|.|.+|.||||++..+.....- ...-...+.+..+..--...+.+.+-
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 358889999999999999888753111 11112456665554444444444443
No 499
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.50 E-value=0.28 Score=50.50 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.....++|+|..|+|||||++.+...
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhcc
Confidence 34578999999999999999988763
No 500
>PLN02200 adenylate kinase family protein
Probab=93.49 E-value=0.064 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+.+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998875
Done!