Query 045152
Match_columns 533
No_of_seqs 414 out of 3366
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 18:15:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.5E-33 5E-38 301.0 19.8 214 185-414 131-357 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 3E-26 1E-30 268.2 21.5 211 180-410 122-344 (1249)
3 1vt4_I APAF-1 related killer D 99.9 8.1E-27 2.8E-31 253.9 14.2 199 184-407 130-350 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 1.2E-24 4.1E-29 235.0 18.5 209 181-410 123-344 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.7 9.5E-18 3.2E-22 138.7 7.3 81 4-89 1-83 (115)
6 2qen_A Walker-type ATPase; unk 99.6 2.5E-14 8.6E-19 143.4 14.1 197 180-396 10-250 (350)
7 1w5s_A Origin recognition comp 99.5 4E-14 1.4E-18 145.4 14.6 211 181-393 21-267 (412)
8 2fna_A Conserved hypothetical 99.5 9.5E-14 3.2E-18 139.5 15.4 196 180-397 11-255 (357)
9 2qby_B CDC6 homolog 3, cell di 99.4 3.2E-12 1.1E-16 129.9 14.0 226 181-410 19-269 (384)
10 2v1u_A Cell division control p 99.4 9.1E-12 3.1E-16 126.4 15.9 203 181-388 18-245 (387)
11 1njg_A DNA polymerase III subu 99.3 1.1E-11 3.7E-16 117.0 15.0 197 182-394 23-230 (250)
12 1fnn_A CDC6P, cell division co 99.3 1.9E-11 6.4E-16 124.3 16.9 206 182-391 17-246 (389)
13 2qby_A CDC6 homolog 1, cell di 99.3 5.8E-12 2E-16 127.8 11.2 204 181-390 19-243 (386)
14 2chg_A Replication factor C sm 99.3 5.1E-11 1.7E-15 110.8 15.5 184 182-391 17-203 (226)
15 1sxj_B Activator 1 37 kDa subu 99.1 4.3E-10 1.5E-14 111.1 13.1 186 182-393 21-211 (323)
16 1iqp_A RFCS; clamp loader, ext 99.0 3.4E-09 1.2E-13 104.7 12.5 183 182-392 25-212 (327)
17 3te6_A Regulatory protein SIR3 98.9 1.4E-08 4.9E-13 98.9 13.5 172 183-359 21-212 (318)
18 2chq_A Replication factor C sm 98.8 3.5E-08 1.2E-12 97.1 11.8 180 183-391 18-203 (319)
19 1jr3_A DNA polymerase III subu 98.8 6.4E-08 2.2E-12 97.5 13.6 195 182-392 16-221 (373)
20 1jbk_A CLPB protein; beta barr 98.7 4.5E-08 1.6E-12 88.3 9.0 45 182-232 22-66 (195)
21 1hqc_A RUVB; extended AAA-ATPa 98.6 5.7E-08 1.9E-12 95.9 9.2 182 182-395 12-214 (324)
22 3bos_A Putative DNA replicatio 98.6 1.5E-07 5.1E-12 88.3 9.5 172 183-391 29-216 (242)
23 3rgz_A Protein brassinosteroid 98.6 5.3E-08 1.8E-12 107.9 6.9 109 420-530 631-766 (768)
24 4fcg_A Uncharacterized protein 98.5 1.4E-07 4.9E-12 93.3 8.8 85 420-507 205-289 (328)
25 1sxj_D Activator 1 41 kDa subu 98.5 3.1E-07 1.1E-11 91.7 10.5 194 182-391 37-234 (353)
26 3pvs_A Replication-associated 98.5 1.7E-06 5.7E-11 88.9 15.8 176 182-390 26-213 (447)
27 2z4s_A Chromosomal replication 98.4 1.1E-06 3.7E-11 90.4 11.7 182 209-411 130-332 (440)
28 4fcg_A Uncharacterized protein 98.4 3.5E-07 1.2E-11 90.5 6.9 83 420-504 228-310 (328)
29 3h4m_A Proteasome-activating n 98.4 3E-06 1E-10 81.8 13.4 184 182-390 17-229 (285)
30 3pfi_A Holliday junction ATP-d 98.4 1.5E-06 5.2E-11 86.1 11.4 177 182-391 29-226 (338)
31 3uk6_A RUVB-like 2; hexameric 98.4 4.5E-06 1.5E-10 83.7 15.0 197 182-390 44-301 (368)
32 1sxj_A Activator 1 95 kDa subu 98.4 1.3E-06 4.3E-11 92.0 11.2 196 182-391 39-252 (516)
33 2qz4_A Paraplegin; AAA+, SPG7, 98.4 5.9E-06 2E-10 78.6 14.7 186 182-390 6-220 (262)
34 2r9u_A Variable lymphocyte rec 98.4 1.3E-06 4.3E-11 77.9 9.1 89 415-507 27-117 (174)
35 1sxj_E Activator 1 40 kDa subu 98.3 1.3E-06 4.4E-11 87.3 10.1 195 182-391 14-236 (354)
36 1d2n_A N-ethylmaleimide-sensit 98.3 6.8E-06 2.3E-10 78.8 14.5 172 182-384 33-229 (272)
37 3u61_B DNA polymerase accessor 98.3 3.2E-06 1.1E-10 83.3 12.3 178 182-390 26-214 (324)
38 3g39_A Variable lymphocyte rec 98.3 1.9E-06 6.4E-11 76.4 9.1 89 415-507 24-114 (170)
39 3syl_A Protein CBBX; photosynt 98.3 4E-06 1.4E-10 81.9 12.3 161 183-359 32-218 (309)
40 1a5t_A Delta prime, HOLB; zinc 98.3 1E-05 3.5E-10 80.0 15.1 170 188-390 8-203 (334)
41 2p65_A Hypothetical protein PF 98.3 9.2E-07 3.2E-11 79.2 6.9 45 182-232 22-66 (187)
42 4b8c_D Glucose-repressible alc 98.2 9E-07 3.1E-11 97.1 6.5 83 420-507 246-328 (727)
43 2ell_A Acidic leucine-rich nuc 98.2 1.3E-06 4.4E-11 77.1 5.9 81 420-506 48-131 (168)
44 4ezg_A Putative uncharacterize 98.2 1.3E-06 4.4E-11 79.5 5.8 84 420-507 87-171 (197)
45 2wfh_A SLIT homolog 2 protein 98.2 3.9E-06 1.3E-10 76.0 9.0 83 420-506 53-137 (193)
46 2ell_A Acidic leucine-rich nuc 98.2 1.4E-06 4.9E-11 76.8 5.2 87 419-507 69-159 (168)
47 3n70_A Transport activator; si 98.2 2.1E-06 7.2E-11 73.9 6.0 114 183-327 2-115 (145)
48 3e6j_A Variable lymphocyte rec 98.1 8E-06 2.8E-10 76.1 9.8 82 420-506 87-170 (229)
49 1sxj_C Activator 1 40 kDa subu 98.1 9.9E-06 3.4E-10 80.4 10.8 174 183-388 26-208 (340)
50 1l8q_A Chromosomal replication 98.1 2.4E-05 8.1E-10 77.0 13.5 156 208-387 36-203 (324)
51 3eie_A Vacuolar protein sortin 98.1 1.7E-05 5.9E-10 78.0 12.4 183 182-389 18-225 (322)
52 3ec2_A DNA replication protein 98.1 4.3E-06 1.5E-10 74.7 6.9 120 188-327 20-142 (180)
53 1dce_A Protein (RAB geranylger 98.1 3.9E-06 1.3E-10 89.2 7.4 81 420-506 462-544 (567)
54 2qp9_X Vacuolar protein sortin 98.1 2.2E-05 7.4E-10 78.3 12.5 186 182-391 51-260 (355)
55 2wfh_A SLIT homolog 2 protein 98.1 8.6E-06 2.9E-10 73.7 8.7 89 415-507 25-114 (193)
56 4ezg_A Putative uncharacterize 98.1 2.6E-06 9E-11 77.4 5.1 83 420-507 111-193 (197)
57 2v9t_B SLIT homolog 2 protein 98.1 1.5E-05 5E-10 73.8 10.2 83 420-506 79-163 (220)
58 1a9n_A U2A', U2A'; complex (nu 98.1 2.8E-06 9.7E-11 75.6 4.8 79 422-506 43-124 (176)
59 1qvr_A CLPB protein; coiled co 98.0 1.1E-05 3.8E-10 90.1 10.2 154 182-357 170-344 (854)
60 2w58_A DNAI, primosome compone 98.0 8.5E-06 2.9E-10 74.2 7.7 118 190-327 37-158 (202)
61 1xwi_A SKD1 protein; VPS4B, AA 98.0 7.5E-05 2.6E-09 73.3 15.0 187 182-391 12-222 (322)
62 2v9t_B SLIT homolog 2 protein 98.0 1.3E-05 4.5E-10 74.1 8.8 85 420-507 55-140 (220)
63 3e6j_A Variable lymphocyte rec 98.0 1E-05 3.5E-10 75.4 8.0 84 420-507 63-147 (229)
64 2je0_A Acidic leucine-rich nuc 98.0 2.1E-06 7.3E-11 74.0 3.1 81 420-506 41-124 (149)
65 4b8c_D Glucose-repressible alc 98.0 4.3E-06 1.5E-10 91.7 6.3 83 420-507 223-305 (727)
66 2o6s_A Variable lymphocyte rec 98.0 2.3E-05 7.9E-10 71.6 10.2 83 420-506 75-159 (208)
67 3pxg_A Negative regulator of g 98.0 2.8E-05 9.5E-10 80.6 11.9 147 182-358 180-338 (468)
68 3d8b_A Fidgetin-like protein 1 98.0 4.1E-05 1.4E-09 76.4 12.8 185 182-391 84-294 (357)
69 2v70_A SLIT-2, SLIT homolog 2 98.0 1.3E-05 4.3E-10 74.2 8.3 84 420-507 80-165 (220)
70 2xwt_C Thyrotropin receptor; s 98.0 5.3E-06 1.8E-10 77.8 5.7 83 420-506 79-167 (239)
71 3co5_A Putative two-component 98.0 3.4E-06 1.2E-10 72.4 3.8 110 183-327 5-115 (143)
72 1w8a_A SLIT protein; signaling 98.0 1.3E-05 4.6E-10 72.4 7.9 83 420-506 53-137 (192)
73 2o6r_A Variable lymphocyte rec 98.0 2E-05 6.7E-10 70.1 8.9 83 420-506 51-135 (177)
74 2o6r_A Variable lymphocyte rec 98.0 3.5E-05 1.2E-09 68.4 10.5 88 416-507 23-112 (177)
75 2gno_A DNA polymerase III, gam 98.0 2.6E-05 8.9E-10 75.8 10.3 148 187-358 2-152 (305)
76 3e4g_A ATP synthase subunit S, 98.0 9.3E-07 3.2E-11 78.1 -0.0 87 422-509 62-153 (176)
77 2zan_A Vacuolar protein sortin 98.0 0.0001 3.5E-09 75.8 15.2 187 182-391 134-344 (444)
78 2v70_A SLIT-2, SLIT homolog 2 98.0 2.1E-05 7.1E-10 72.8 8.8 84 420-507 56-141 (220)
79 1w8a_A SLIT protein; signaling 98.0 1.9E-05 6.4E-10 71.4 8.3 89 415-507 23-114 (192)
80 3rfs_A Internalin B, repeat mo 98.0 2.7E-05 9.3E-10 74.5 9.9 84 420-507 108-193 (272)
81 1p9a_G Platelet glycoprotein I 97.9 2.9E-05 1E-09 75.1 10.0 83 420-506 99-183 (290)
82 3m19_A Variable lymphocyte rec 97.9 3.1E-05 1E-09 73.1 9.9 84 420-507 106-191 (251)
83 3m19_A Variable lymphocyte rec 97.9 3.2E-05 1.1E-09 73.0 9.9 84 420-507 82-167 (251)
84 3cf0_A Transitional endoplasmi 97.9 0.00013 4.4E-09 70.9 14.1 181 182-387 15-223 (301)
85 1ozn_A Reticulon 4 receptor; N 97.9 2.9E-05 1E-09 74.7 9.4 84 420-506 104-188 (285)
86 3b9p_A CG5977-PA, isoform A; A 97.9 0.00025 8.6E-09 68.6 16.1 183 182-391 21-232 (297)
87 1a9n_A U2A', U2A'; complex (nu 97.9 4.6E-06 1.6E-10 74.2 3.3 87 420-509 63-154 (176)
88 2o6s_A Variable lymphocyte rec 97.9 3E-05 1E-09 70.8 8.8 83 420-506 51-135 (208)
89 2je0_A Acidic leucine-rich nuc 97.9 1.4E-05 4.7E-10 68.9 6.1 84 419-507 15-100 (149)
90 2r9u_A Variable lymphocyte rec 97.9 4.8E-05 1.6E-09 67.5 9.6 77 425-507 16-93 (174)
91 1dce_A Protein (RAB geranylger 97.9 1.2E-05 4.3E-10 85.3 6.7 78 422-506 442-519 (567)
92 2xwt_C Thyrotropin receptor; s 97.9 1.8E-05 6.2E-10 74.0 7.1 83 420-506 104-190 (239)
93 4fcw_A Chaperone protein CLPB; 97.9 3.6E-05 1.2E-09 75.1 9.3 167 183-358 18-229 (311)
94 2o6q_A Variable lymphocyte rec 97.9 5.2E-05 1.8E-09 72.4 10.2 83 420-506 108-192 (270)
95 1ogq_A PGIP-2, polygalacturona 97.9 9.4E-06 3.2E-10 79.5 4.9 84 420-507 100-186 (313)
96 4eco_A Uncharacterized protein 97.9 1.6E-05 5.6E-10 85.8 7.2 71 433-506 194-284 (636)
97 2o6q_A Variable lymphocyte rec 97.9 5.7E-05 1.9E-09 72.1 10.2 84 420-507 132-217 (270)
98 4g8a_A TOLL-like receptor 4; l 97.9 2.1E-05 7E-10 84.6 7.9 83 420-506 75-159 (635)
99 3vfd_A Spastin; ATPase, microt 97.9 0.00016 5.6E-09 73.0 14.0 186 182-391 115-325 (389)
100 3o6n_A APL1; leucine-rich repe 97.8 1E-05 3.5E-10 81.8 5.1 83 420-506 247-329 (390)
101 1ozn_A Reticulon 4 receptor; N 97.8 6.2E-05 2.1E-09 72.4 10.2 84 420-506 79-164 (285)
102 1xku_A Decorin; proteoglycan, 97.8 2.4E-05 8.3E-10 77.0 7.4 84 420-506 191-274 (330)
103 1ojl_A Transcriptional regulat 97.8 3.2E-05 1.1E-09 75.3 7.9 46 182-231 2-47 (304)
104 3hu3_A Transitional endoplasmi 97.8 7.1E-05 2.4E-09 77.6 10.7 183 182-389 204-412 (489)
105 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00016 5.5E-09 79.7 13.8 156 182-358 186-362 (758)
106 4eco_A Uncharacterized protein 97.8 1.2E-05 4.1E-10 86.9 4.6 67 437-505 239-315 (636)
107 3g39_A Variable lymphocyte rec 97.8 8.3E-05 2.8E-09 65.6 9.3 78 424-507 12-90 (170)
108 4b4t_J 26S protease regulatory 97.8 0.00042 1.4E-08 69.2 15.1 181 182-387 148-356 (405)
109 3o6n_A APL1; leucine-rich repe 97.8 7.1E-05 2.4E-09 75.5 9.8 82 420-506 92-176 (390)
110 4ecn_A Leucine-rich repeat pro 97.8 2.9E-05 1E-09 86.3 7.3 53 422-478 729-783 (876)
111 2bjv_A PSP operon transcriptio 97.8 2.8E-05 9.5E-10 74.1 6.3 46 183-232 7-52 (265)
112 3oja_B Anopheles plasmodium-re 97.8 6.6E-05 2.3E-09 80.4 9.8 83 420-506 98-182 (597)
113 2ifg_A High affinity nerve gro 97.8 3.8E-05 1.3E-09 76.2 7.4 84 421-507 31-115 (347)
114 1ogq_A PGIP-2, polygalacturona 97.8 2.7E-05 9.2E-10 76.2 6.1 84 420-507 124-209 (313)
115 3rfs_A Internalin B, repeat mo 97.7 7.3E-05 2.5E-09 71.4 9.0 83 420-506 132-216 (272)
116 1p9a_G Platelet glycoprotein I 97.7 6.8E-05 2.3E-09 72.5 8.5 84 420-507 123-207 (290)
117 2z62_A TOLL-like receptor 4, v 97.7 5.6E-05 1.9E-09 72.3 7.8 84 420-506 75-160 (276)
118 3vq2_A TLR4, TOLL-like recepto 97.7 5.6E-05 1.9E-09 81.0 8.4 83 420-506 79-164 (606)
119 1h6u_A Internalin H; cell adhe 97.7 4.5E-05 1.6E-09 74.4 7.1 79 420-506 84-162 (308)
120 2ft3_A Biglycan; proteoglycan, 97.7 4.1E-05 1.4E-09 75.4 6.6 83 421-506 193-275 (332)
121 4g8a_A TOLL-like receptor 4; l 97.7 4E-05 1.4E-09 82.3 7.0 83 420-506 99-184 (635)
122 3pxi_A Negative regulator of g 97.7 0.00015 5E-09 80.0 11.5 149 182-358 180-338 (758)
123 4b4t_L 26S protease subunit RP 97.7 0.00039 1.3E-08 70.5 13.7 180 182-387 181-389 (437)
124 3zyi_A Leucine-rich repeat-con 97.7 5.7E-05 2E-09 77.9 7.6 83 420-506 146-229 (452)
125 2ifg_A High affinity nerve gro 97.7 4.6E-05 1.6E-09 75.6 6.6 79 426-507 13-92 (347)
126 4fmz_A Internalin; leucine ric 97.7 5.1E-05 1.8E-09 75.1 6.8 80 420-506 87-166 (347)
127 1ofh_A ATP-dependent HSL prote 97.7 0.00028 9.7E-09 68.5 12.0 51 182-232 15-73 (310)
128 4b4t_K 26S protease regulatory 97.7 0.00026 9E-09 71.6 12.0 180 182-386 172-380 (428)
129 3zyi_A Leucine-rich repeat-con 97.7 7.6E-05 2.6E-09 77.0 8.3 84 420-507 98-183 (452)
130 2kjq_A DNAA-related protein; s 97.7 3.3E-05 1.1E-09 66.6 4.6 87 209-327 36-124 (149)
131 3rgz_A Protein brassinosteroid 97.7 4.4E-05 1.5E-09 84.4 6.8 84 421-506 466-549 (768)
132 3o53_A Protein LRIM1, AGAP0063 97.6 3.1E-05 1.1E-09 75.9 4.7 83 420-508 168-250 (317)
133 2z80_A TOLL-like receptor 2, v 97.6 5E-05 1.7E-09 75.6 6.3 85 420-506 99-185 (353)
134 2z7x_B TOLL-like receptor 1, v 97.6 6.4E-05 2.2E-09 79.0 7.3 82 420-507 398-480 (520)
135 3oja_B Anopheles plasmodium-re 97.6 9.8E-05 3.3E-09 79.1 8.9 80 420-505 122-202 (597)
136 1wwl_A Monocyte differentiatio 97.6 5.4E-05 1.8E-09 74.0 6.1 84 420-506 120-212 (312)
137 2z62_A TOLL-like receptor 4, v 97.6 9.7E-05 3.3E-09 70.6 7.7 84 420-507 51-136 (276)
138 2z80_A TOLL-like receptor 2, v 97.6 6.8E-05 2.3E-09 74.6 6.7 82 420-506 75-160 (353)
139 3vq2_A TLR4, TOLL-like recepto 97.6 5.1E-05 1.7E-09 81.4 6.2 84 420-507 472-557 (606)
140 2xot_A Amphoterin-induced prot 97.6 9.1E-05 3.1E-09 74.0 7.6 83 420-506 87-174 (361)
141 1h6u_A Internalin H; cell adhe 97.6 7.7E-05 2.6E-09 72.8 6.8 81 419-507 105-185 (308)
142 4b4t_H 26S protease regulatory 97.6 0.0011 3.7E-08 67.2 15.3 178 183-386 210-416 (467)
143 3zyj_A Leucine-rich repeat-con 97.6 9.2E-05 3.1E-09 76.1 7.7 83 420-506 135-218 (440)
144 3v47_A TOLL-like receptor 5B a 97.6 9.5E-05 3.2E-09 76.1 7.8 85 420-507 322-407 (455)
145 4fmz_A Internalin; leucine ric 97.6 8.9E-05 3E-09 73.4 7.2 81 419-506 108-188 (347)
146 2z66_A Variable lymphocyte rec 97.6 0.00012 4.1E-09 71.1 7.9 86 420-507 174-260 (306)
147 3v47_A TOLL-like receptor 5B a 97.6 9.6E-05 3.3E-09 76.1 7.6 83 420-506 53-140 (455)
148 2z7x_B TOLL-like receptor 1, v 97.6 5.9E-05 2E-09 79.3 6.0 82 420-507 44-127 (520)
149 2z81_A CD282 antigen, TOLL-lik 97.6 7.9E-05 2.7E-09 78.8 6.9 84 420-506 49-134 (549)
150 4ecn_A Leucine-rich repeat pro 97.6 9.9E-05 3.4E-09 82.1 7.9 84 419-508 751-840 (876)
151 2c9o_A RUVB-like 1; hexameric 97.6 0.00025 8.6E-09 73.1 10.5 97 290-391 297-409 (456)
152 3j0a_A TOLL-like receptor 5; m 97.6 0.00011 3.6E-09 82.3 8.1 86 420-506 72-159 (844)
153 3pxi_A Negative regulator of g 97.6 7.8E-05 2.7E-09 82.2 7.0 156 182-358 491-675 (758)
154 1xeu_A Internalin C; cellular 97.5 0.00012 3.9E-09 69.7 7.1 78 420-506 62-139 (263)
155 3zyj_A Leucine-rich repeat-con 97.5 0.00012 4.3E-09 75.1 7.8 81 421-506 185-266 (440)
156 2ft3_A Biglycan; proteoglycan, 97.5 0.00015 5E-09 71.5 8.0 82 420-507 77-159 (332)
157 3g06_A SSPH2 (leucine-rich rep 97.5 0.00011 3.9E-09 78.7 7.6 77 420-507 220-296 (622)
158 3j0a_A TOLL-like receptor 5; m 97.5 0.00013 4.3E-09 81.6 8.3 84 420-506 47-134 (844)
159 1h6t_A Internalin B; cell adhe 97.5 9.9E-05 3.4E-09 71.3 6.4 80 420-507 133-212 (291)
160 1xeu_A Internalin C; cellular 97.5 0.00012 4.1E-09 69.6 6.9 78 421-506 106-183 (263)
161 1h6t_A Internalin B; cell adhe 97.5 0.00011 3.6E-09 71.1 6.6 79 420-506 89-167 (291)
162 2ast_B S-phase kinase-associat 97.5 1.4E-05 4.7E-10 78.9 0.2 82 420-505 193-282 (336)
163 2z66_A Variable lymphocyte rec 97.5 0.0001 3.5E-09 71.6 6.5 85 420-507 149-235 (306)
164 3a79_B TLR6, VLRB.59, TOLL-lik 97.5 0.00014 4.7E-09 77.3 8.0 82 420-507 427-509 (562)
165 1lv7_A FTSH; alpha/beta domain 97.5 0.00083 2.8E-08 63.4 12.6 184 182-390 12-223 (257)
166 1in4_A RUVB, holliday junction 97.5 0.00048 1.6E-08 67.9 11.2 175 183-390 26-221 (334)
167 2r62_A Cell division protease 97.5 5.1E-05 1.8E-09 72.3 4.1 180 182-386 11-219 (268)
168 2id5_A Lingo-1, leucine rich r 97.5 0.00015 5.1E-09 75.3 7.9 83 420-506 79-163 (477)
169 4b4t_I 26S protease regulatory 97.5 0.00077 2.6E-08 67.6 12.6 180 182-387 182-390 (437)
170 4b4t_M 26S protease regulatory 97.5 0.00023 8E-09 72.1 9.0 179 182-386 181-388 (434)
171 4glp_A Monocyte differentiatio 97.5 0.00016 5.4E-09 70.5 7.6 81 420-507 223-306 (310)
172 2ast_B S-phase kinase-associat 97.5 6.8E-06 2.3E-10 81.1 -2.4 87 420-508 141-235 (336)
173 2ce7_A Cell division protein F 97.5 0.00067 2.3E-08 69.8 12.4 179 182-385 16-221 (476)
174 1wwl_A Monocyte differentiatio 97.5 0.00013 4.4E-09 71.2 6.9 80 420-507 227-308 (312)
175 4ay9_X Follicle-stimulating ho 97.5 0.0001 3.5E-09 73.3 6.2 90 415-506 24-115 (350)
176 1o6v_A Internalin A; bacterial 97.5 9.5E-05 3.2E-09 76.6 6.1 79 420-506 67-145 (466)
177 3oja_A Leucine-rich immune mol 97.5 6.8E-05 2.3E-09 78.2 4.9 83 420-508 168-250 (487)
178 3a79_B TLR6, VLRB.59, TOLL-lik 97.5 0.00013 4.4E-09 77.5 7.2 81 420-507 75-158 (562)
179 2xot_A Amphoterin-induced prot 97.5 0.00017 5.8E-09 72.0 7.6 84 419-506 62-147 (361)
180 3oja_A Leucine-rich immune mol 97.5 6.9E-05 2.4E-09 78.1 4.7 79 420-502 190-269 (487)
181 2z63_A TOLL-like receptor 4, v 97.5 0.00016 5.4E-09 76.7 7.7 83 420-506 444-529 (570)
182 1ds9_A Outer arm dynein; leuci 97.5 2E-06 6.9E-11 78.2 -6.2 82 420-507 69-152 (198)
183 1xku_A Decorin; proteoglycan, 97.5 0.00027 9.3E-09 69.4 8.8 80 421-506 76-156 (330)
184 3o53_A Protein LRIM1, AGAP0063 97.5 8.6E-05 2.9E-09 72.7 4.9 83 420-507 143-226 (317)
185 1m9s_A Internalin B; cell inva 97.4 0.00015 5E-09 77.6 7.0 79 420-506 86-164 (605)
186 1m9s_A Internalin B; cell inva 97.4 0.00015 5.1E-09 77.5 6.9 80 419-506 107-186 (605)
187 2z81_A CD282 antigen, TOLL-lik 97.4 0.00015 5E-09 76.7 6.5 86 420-507 73-160 (549)
188 3t6q_A CD180 antigen; protein- 97.4 0.00021 7.2E-09 76.5 7.3 84 420-506 80-164 (606)
189 2id5_A Lingo-1, leucine rich r 97.4 0.0003 1E-08 72.9 8.3 85 420-506 55-139 (477)
190 1ziw_A TOLL-like receptor 3; i 97.4 0.00035 1.2E-08 75.9 9.0 84 420-506 72-156 (680)
191 1ziw_A TOLL-like receptor 3; i 97.4 0.00026 9E-09 76.9 8.0 85 420-507 48-133 (680)
192 2z63_A TOLL-like receptor 4, v 97.4 0.00019 6.7E-09 76.0 6.8 84 420-506 420-505 (570)
193 1ds9_A Outer arm dynein; leuci 97.4 5.5E-06 1.9E-10 75.3 -4.6 58 421-481 93-150 (198)
194 3bz5_A Internalin-J, INLJ; leu 97.4 0.00043 1.5E-08 71.4 9.1 76 420-506 63-138 (457)
195 3m6a_A ATP-dependent protease 97.3 0.0014 4.9E-08 68.9 13.0 165 182-358 81-266 (543)
196 3t6q_A CD180 antigen; protein- 97.3 0.00031 1E-08 75.2 7.6 84 420-506 56-140 (606)
197 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00034 1.2E-08 77.1 7.7 164 182-358 458-666 (758)
198 3t15_A Ribulose bisphosphate c 97.3 0.0017 5.9E-08 62.6 11.8 26 207-232 34-59 (293)
199 1qvr_A CLPB protein; coiled co 97.2 0.00059 2E-08 76.1 8.8 135 183-327 559-710 (854)
200 3cvr_A Invasion plasmid antige 97.2 0.00038 1.3E-08 73.7 6.8 78 419-507 158-242 (571)
201 2qgz_A Helicase loader, putati 97.2 0.00033 1.1E-08 68.2 5.7 118 190-327 136-257 (308)
202 1o6v_A Internalin A; bacterial 97.2 0.00044 1.5E-08 71.5 6.7 79 420-506 45-123 (466)
203 3cf2_A TER ATPase, transitiona 97.2 0.003 1E-07 68.9 13.4 180 183-387 205-409 (806)
204 2r44_A Uncharacterized protein 97.1 0.00056 1.9E-08 67.3 6.8 152 182-359 27-199 (331)
205 4glp_A Monocyte differentiatio 97.1 0.0008 2.7E-08 65.4 7.7 85 420-506 116-208 (310)
206 2cvh_A DNA repair and recombin 97.1 0.0022 7.5E-08 58.6 10.3 86 208-299 19-116 (220)
207 3bz5_A Internalin-J, INLJ; leu 97.1 0.00085 2.9E-08 69.2 8.1 77 419-506 83-159 (457)
208 4ay9_X Follicle-stimulating ho 97.0 0.00087 3E-08 66.4 7.0 77 421-503 177-254 (350)
209 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00032 1.1E-08 67.7 3.5 70 208-299 122-193 (331)
210 3g06_A SSPH2 (leucine-rich rep 97.0 0.0014 4.7E-08 70.2 8.7 74 420-506 60-152 (622)
211 1jl5_A Outer protein YOPM; leu 97.0 0.0014 4.7E-08 67.5 8.1 74 422-505 132-205 (454)
212 3e4g_A ATP synthase subunit S, 96.9 0.00028 9.5E-09 62.2 2.1 73 435-509 51-128 (176)
213 3cvr_A Invasion plasmid antige 96.9 0.0017 5.7E-08 68.7 8.0 71 422-506 121-191 (571)
214 1jl5_A Outer protein YOPM; leu 96.8 0.0023 8E-08 65.8 8.0 75 420-506 194-268 (454)
215 2dhr_A FTSH; AAA+ protein, hex 96.8 0.017 5.9E-07 59.6 14.2 175 182-385 31-236 (499)
216 1ixz_A ATP-dependent metallopr 96.7 0.008 2.7E-07 56.4 10.4 178 182-385 16-221 (254)
217 2x8a_A Nuclear valosin-contain 96.7 0.011 3.9E-07 56.1 11.6 126 212-358 47-191 (274)
218 1ypw_A Transitional endoplasmi 96.7 0.0047 1.6E-07 68.2 9.9 157 182-358 204-385 (806)
219 1jr3_D DNA polymerase III, del 96.6 0.016 5.4E-07 57.1 12.5 157 208-390 17-183 (343)
220 2ca6_A RAN GTPase-activating p 96.5 0.00026 8.8E-09 71.3 -1.3 84 420-507 215-315 (386)
221 2b8t_A Thymidine kinase; deoxy 96.5 0.0018 6.2E-08 59.5 4.3 112 208-327 11-125 (223)
222 3hr8_A Protein RECA; alpha and 96.5 0.0063 2.1E-07 60.0 8.4 85 207-298 59-149 (356)
223 2ca6_A RAN GTPase-activating p 96.5 0.00052 1.8E-08 69.0 0.6 84 420-507 186-286 (386)
224 1um8_A ATP-dependent CLP prote 96.5 0.0086 2.9E-07 59.9 9.5 23 209-231 72-94 (376)
225 1v5w_A DMC1, meiotic recombina 96.5 0.012 4.1E-07 58.0 10.4 90 207-297 120-228 (343)
226 1n0w_A DNA repair protein RAD5 96.5 0.007 2.4E-07 56.1 8.2 90 208-298 23-129 (243)
227 1iy2_A ATP-dependent metallopr 96.3 0.01 3.5E-07 56.6 8.6 179 182-385 40-245 (278)
228 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0069 2.4E-07 55.7 7.1 116 208-328 22-168 (235)
229 2i1q_A DNA repair and recombin 96.2 0.0094 3.2E-07 58.2 8.0 90 207-297 96-213 (322)
230 3io5_A Recombination and repai 96.2 0.015 5.2E-07 55.8 9.0 83 211-298 30-121 (333)
231 1rz3_A Hypothetical protein rb 96.2 0.0051 1.7E-07 55.6 5.3 42 187-231 3-44 (201)
232 2z43_A DNA repair and recombin 96.1 0.014 4.9E-07 56.9 8.6 89 208-297 106-212 (324)
233 2px0_A Flagellar biosynthesis 95.9 0.019 6.6E-07 55.2 8.4 87 208-297 104-191 (296)
234 1xp8_A RECA protein, recombina 95.9 0.022 7.4E-07 56.5 8.8 84 208-298 73-162 (366)
235 2zr9_A Protein RECA, recombina 95.9 0.019 6.4E-07 56.6 8.2 84 208-298 60-149 (349)
236 1u94_A RECA protein, recombina 95.8 0.018 6.2E-07 56.9 7.6 83 208-297 62-150 (356)
237 1g5t_A COB(I)alamin adenosyltr 95.7 0.0068 2.3E-07 54.1 3.6 117 210-328 29-163 (196)
238 3lw7_A Adenylate kinase relate 95.6 0.0061 2.1E-07 53.2 3.0 20 210-229 2-21 (179)
239 2p1m_B Transport inhibitor res 95.6 0.0018 6.3E-08 68.8 -0.6 86 420-508 129-224 (594)
240 2p1m_B Transport inhibitor res 95.5 0.0023 7.9E-08 68.0 0.1 85 420-506 155-246 (594)
241 3c8u_A Fructokinase; YP_612366 95.5 0.011 3.7E-07 53.7 4.5 37 191-231 8-44 (208)
242 3ice_A Transcription terminati 95.5 0.024 8.1E-07 56.0 7.1 54 192-251 162-216 (422)
243 1zp6_A Hypothetical protein AT 95.4 0.0079 2.7E-07 53.6 3.3 24 208-231 8-31 (191)
244 1sky_E F1-ATPase, F1-ATP synth 95.4 0.043 1.5E-06 55.8 9.0 87 210-297 152-254 (473)
245 3tqc_A Pantothenate kinase; bi 95.4 0.036 1.2E-06 53.8 8.0 45 185-231 70-114 (321)
246 1gvn_B Zeta; postsegregational 95.3 0.016 5.3E-07 55.6 5.2 40 191-231 16-55 (287)
247 3rw6_A Nuclear RNA export fact 95.3 0.0076 2.6E-07 56.9 2.9 79 420-501 169-257 (267)
248 1qhx_A CPT, protein (chloramph 95.3 0.0081 2.8E-07 52.8 2.9 22 210-231 4-25 (178)
249 3rw6_A Nuclear RNA export fact 95.3 0.0098 3.4E-07 56.2 3.6 62 443-507 168-232 (267)
250 1pzn_A RAD51, DNA repair and r 95.3 0.058 2E-06 53.2 9.3 46 207-252 129-178 (349)
251 3kb2_A SPBC2 prophage-derived 95.2 0.0086 3E-07 52.2 2.9 22 210-231 2-23 (173)
252 1ly1_A Polynucleotide kinase; 95.2 0.0096 3.3E-07 52.3 3.1 22 210-231 3-24 (181)
253 1odf_A YGR205W, hypothetical 3 95.2 0.014 5E-07 55.9 4.5 26 207-232 29-54 (290)
254 3vaa_A Shikimate kinase, SK; s 95.2 0.0087 3E-07 53.9 2.8 23 209-231 25-47 (199)
255 3lda_A DNA repair protein RAD5 95.2 0.047 1.6E-06 54.8 8.3 58 208-266 177-238 (400)
256 1kgd_A CASK, peripheral plasma 95.2 0.01 3.5E-07 52.5 3.2 23 209-231 5-27 (180)
257 1vma_A Cell division protein F 95.2 0.095 3.2E-06 50.5 10.2 89 207-298 102-196 (306)
258 3nbx_X ATPase RAVA; AAA+ ATPas 95.2 0.014 4.9E-07 60.3 4.7 42 183-232 23-64 (500)
259 3uie_A Adenylyl-sulfate kinase 95.1 0.013 4.3E-07 52.8 3.7 25 208-232 24-48 (200)
260 1ex7_A Guanylate kinase; subst 95.1 0.0082 2.8E-07 53.4 2.3 22 210-231 2-23 (186)
261 1knq_A Gluconate kinase; ALFA/ 95.0 0.015 5.1E-07 51.0 3.8 24 208-231 7-30 (175)
262 4gp7_A Metallophosphoesterase; 95.0 0.012 4E-07 51.6 3.0 24 208-231 8-31 (171)
263 1z7x_W Ribonuclease inhibitor; 95.0 0.0031 1.1E-07 64.7 -0.9 35 444-481 255-294 (461)
264 3dm5_A SRP54, signal recogniti 95.0 0.12 4.3E-06 52.1 10.8 24 208-231 99-122 (443)
265 3tau_A Guanylate kinase, GMP k 95.0 0.012 4.2E-07 53.3 3.2 25 208-232 7-31 (208)
266 3tr0_A Guanylate kinase, GMP k 95.0 0.013 4.3E-07 52.9 3.2 23 209-231 7-29 (205)
267 1z7x_W Ribonuclease inhibitor; 95.0 0.0029 1E-07 64.9 -1.3 34 472-506 86-124 (461)
268 1kag_A SKI, shikimate kinase I 94.9 0.011 3.6E-07 51.7 2.5 22 210-231 5-26 (173)
269 3sr0_A Adenylate kinase; phosp 94.9 0.038 1.3E-06 50.0 6.3 21 211-231 2-22 (206)
270 2p5t_B PEZT; postsegregational 94.9 0.02 6.7E-07 53.8 4.4 40 191-231 15-54 (253)
271 3hws_A ATP-dependent CLP prote 94.9 0.017 5.9E-07 57.3 4.3 50 183-232 16-74 (363)
272 2rhm_A Putative kinase; P-loop 94.9 0.014 4.8E-07 51.9 3.2 24 208-231 4-27 (193)
273 3bh0_A DNAB-like replicative h 94.8 0.11 3.8E-06 50.3 9.8 53 207-263 66-118 (315)
274 4eun_A Thermoresistant glucoki 94.8 0.014 4.6E-07 52.6 3.0 24 208-231 28-51 (200)
275 3trf_A Shikimate kinase, SK; a 94.8 0.012 4.2E-07 52.0 2.7 23 209-231 5-27 (185)
276 2ra8_A Uncharacterized protein 94.8 0.0051 1.7E-07 61.1 0.0 87 420-507 218-319 (362)
277 3asz_A Uridine kinase; cytidin 94.8 0.016 5.3E-07 52.6 3.3 24 208-231 5-28 (211)
278 3kl4_A SRP54, signal recogniti 94.8 0.13 4.3E-06 52.1 10.2 25 208-232 96-120 (433)
279 1nks_A Adenylate kinase; therm 94.8 0.014 4.9E-07 51.8 2.9 22 210-231 2-23 (194)
280 2bdt_A BH3686; alpha-beta prot 94.7 0.017 5.7E-07 51.4 3.3 22 210-231 3-24 (189)
281 3a00_A Guanylate kinase, GMP k 94.7 0.012 4.2E-07 52.3 2.3 22 210-231 2-23 (186)
282 2j41_A Guanylate kinase; GMP, 94.7 0.016 5.6E-07 52.1 3.2 23 209-231 6-28 (207)
283 3t61_A Gluconokinase; PSI-biol 94.6 0.013 4.4E-07 52.8 2.3 23 209-231 18-40 (202)
284 2qt1_A Nicotinamide riboside k 94.6 0.019 6.6E-07 51.9 3.5 25 207-231 19-43 (207)
285 3goz_A Leucine-rich repeat-con 94.6 0.0088 3E-07 59.4 1.3 85 420-507 49-150 (362)
286 2ga8_A Hypothetical 39.9 kDa p 94.6 0.029 9.9E-07 54.9 4.9 44 186-231 3-46 (359)
287 1kht_A Adenylate kinase; phosp 94.6 0.016 5.5E-07 51.4 2.9 22 210-231 4-25 (192)
288 1ye8_A Protein THEP1, hypothet 94.6 0.018 6.1E-07 50.9 3.1 22 211-232 2-23 (178)
289 2ck3_D ATP synthase subunit be 94.6 0.23 8E-06 50.3 11.6 65 193-263 142-207 (482)
290 2qor_A Guanylate kinase; phosp 94.6 0.013 4.4E-07 53.0 2.2 24 208-231 11-34 (204)
291 1lvg_A Guanylate kinase, GMP k 94.6 0.014 4.7E-07 52.6 2.4 23 209-231 4-26 (198)
292 2orw_A Thymidine kinase; TMTK, 94.6 0.0042 1.4E-07 55.3 -1.1 22 210-231 4-25 (184)
293 1ukz_A Uridylate kinase; trans 94.5 0.021 7.1E-07 51.4 3.5 25 207-231 13-37 (203)
294 1uf9_A TT1252 protein; P-loop, 94.5 0.02 6.7E-07 51.4 3.3 25 207-231 6-30 (203)
295 3upu_A ATP-dependent DNA helic 94.5 0.036 1.2E-06 56.9 5.7 22 211-232 47-68 (459)
296 3iij_A Coilin-interacting nucl 94.5 0.015 5E-07 51.3 2.3 23 209-231 11-33 (180)
297 3ogk_B Coronatine-insensitive 94.5 0.029 1E-06 59.4 5.1 81 420-504 242-327 (592)
298 3cf2_A TER ATPase, transitiona 94.5 0.076 2.6E-06 57.9 8.2 158 181-358 476-661 (806)
299 1tev_A UMP-CMP kinase; ploop, 94.5 0.02 6.7E-07 51.0 3.1 23 209-231 3-25 (196)
300 2jaq_A Deoxyguanosine kinase; 94.5 0.018 6.1E-07 51.7 2.9 21 211-231 2-22 (205)
301 1y63_A LMAJ004144AAA protein; 94.4 0.021 7E-07 50.7 3.2 24 208-231 9-32 (184)
302 3umf_A Adenylate kinase; rossm 94.4 0.022 7.6E-07 51.9 3.4 25 207-231 27-51 (217)
303 3ney_A 55 kDa erythrocyte memb 94.4 0.021 7.2E-07 51.2 3.1 24 208-231 18-41 (197)
304 1cke_A CK, MSSA, protein (cyti 94.4 0.02 7E-07 52.4 3.0 22 210-231 6-27 (227)
305 3goz_A Leucine-rich repeat-con 94.4 0.0052 1.8E-07 61.1 -1.1 84 422-507 197-296 (362)
306 2yvu_A Probable adenylyl-sulfa 94.4 0.026 8.8E-07 50.0 3.6 26 207-232 11-36 (186)
307 1fx0_B ATP synthase beta chain 94.4 0.12 4E-06 52.7 8.8 99 193-297 154-275 (498)
308 4a1f_A DNAB helicase, replicat 94.4 0.083 2.9E-06 51.6 7.5 51 208-262 45-95 (338)
309 3cm0_A Adenylate kinase; ATP-b 94.4 0.024 8.1E-07 50.1 3.4 23 209-231 4-26 (186)
310 1zuh_A Shikimate kinase; alpha 94.3 0.019 6.5E-07 49.9 2.7 24 208-231 6-29 (168)
311 2ze6_A Isopentenyl transferase 94.3 0.021 7.3E-07 53.5 3.1 22 210-231 2-23 (253)
312 2c95_A Adenylate kinase 1; tra 94.3 0.019 6.6E-07 51.2 2.7 24 208-231 8-31 (196)
313 3aez_A Pantothenate kinase; tr 94.3 0.027 9.1E-07 54.6 3.9 25 207-231 88-112 (312)
314 1jjv_A Dephospho-COA kinase; P 94.3 0.025 8.5E-07 51.0 3.5 22 210-231 3-24 (206)
315 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.023 7.8E-07 53.6 3.2 23 209-231 4-26 (260)
316 1znw_A Guanylate kinase, GMP k 94.3 0.022 7.6E-07 51.5 3.1 24 208-231 19-42 (207)
317 1htw_A HI0065; nucleotide-bind 94.3 0.03 1E-06 48.4 3.7 24 208-231 32-55 (158)
318 2bbw_A Adenylate kinase 4, AK4 94.2 0.022 7.6E-07 53.1 3.1 23 209-231 27-49 (246)
319 1xjc_A MOBB protein homolog; s 94.2 0.023 8E-07 49.5 2.9 25 208-232 3-27 (169)
320 2if2_A Dephospho-COA kinase; a 94.2 0.022 7.4E-07 51.3 2.9 21 211-231 3-23 (204)
321 3tlx_A Adenylate kinase 2; str 94.2 0.034 1.2E-06 51.8 4.2 24 208-231 28-51 (243)
322 2plr_A DTMP kinase, probable t 94.2 0.025 8.6E-07 51.1 3.2 23 210-232 5-27 (213)
323 2hf9_A Probable hydrogenase ni 94.2 0.032 1.1E-06 51.0 4.0 25 208-232 37-61 (226)
324 2cdn_A Adenylate kinase; phosp 94.2 0.025 8.6E-07 50.8 3.2 24 208-231 19-42 (201)
325 2jeo_A Uridine-cytidine kinase 94.1 0.029 9.8E-07 52.3 3.6 24 208-231 24-47 (245)
326 1via_A Shikimate kinase; struc 94.1 0.022 7.6E-07 49.9 2.6 21 211-231 6-26 (175)
327 1qf9_A UMP/CMP kinase, protein 94.1 0.029 1E-06 49.7 3.4 23 209-231 6-28 (194)
328 1s96_A Guanylate kinase, GMP k 94.1 0.025 8.6E-07 51.7 3.0 24 208-231 15-38 (219)
329 2xxa_A Signal recognition part 94.1 0.22 7.4E-06 50.5 10.2 25 207-231 98-122 (433)
330 1z6g_A Guanylate kinase; struc 94.1 0.021 7.2E-07 52.2 2.5 24 208-231 22-45 (218)
331 2vli_A Antibiotic resistance p 94.1 0.017 5.9E-07 50.8 1.9 23 209-231 5-27 (183)
332 1uj2_A Uridine-cytidine kinase 94.0 0.029 9.8E-07 52.5 3.4 25 207-231 20-44 (252)
333 1rj9_A FTSY, signal recognitio 94.0 0.027 9.2E-07 54.3 3.3 24 208-231 101-124 (304)
334 3e70_C DPA, signal recognition 94.0 0.17 5.9E-06 49.2 9.1 25 207-231 127-151 (328)
335 2z0h_A DTMP kinase, thymidylat 94.0 0.087 3E-06 46.8 6.4 21 211-231 2-22 (197)
336 2ra8_A Uncharacterized protein 94.0 0.038 1.3E-06 54.8 4.3 38 469-506 250-290 (362)
337 2pt5_A Shikimate kinase, SK; a 93.9 0.028 9.4E-07 48.7 2.9 21 211-231 2-22 (168)
338 2ffh_A Protein (FFH); SRP54, s 93.9 0.22 7.5E-06 50.2 9.8 24 208-231 97-120 (425)
339 1zu4_A FTSY; GTPase, signal re 93.9 0.21 7.2E-06 48.4 9.4 25 207-231 103-127 (320)
340 2pez_A Bifunctional 3'-phospho 93.9 0.034 1.1E-06 48.9 3.4 24 208-231 4-27 (179)
341 2bwj_A Adenylate kinase 5; pho 93.9 0.026 9E-07 50.4 2.7 23 209-231 12-34 (199)
342 2pbr_A DTMP kinase, thymidylat 93.9 0.028 9.7E-07 49.9 2.9 21 211-231 2-22 (195)
343 2j37_W Signal recognition part 93.9 0.5 1.7E-05 48.7 12.5 25 207-231 99-123 (504)
344 1e6c_A Shikimate kinase; phosp 93.8 0.024 8.2E-07 49.4 2.3 22 210-231 3-24 (173)
345 3hjn_A DTMP kinase, thymidylat 93.8 0.13 4.6E-06 46.0 7.3 51 211-263 2-52 (197)
346 1j8m_F SRP54, signal recogniti 93.8 0.24 8.3E-06 47.4 9.6 88 209-298 98-190 (297)
347 1aky_A Adenylate kinase; ATP:A 93.8 0.028 9.6E-07 51.3 2.8 23 209-231 4-26 (220)
348 2fz4_A DNA repair protein RAD2 93.8 0.29 9.9E-06 45.1 9.8 103 212-325 111-226 (237)
349 2iyv_A Shikimate kinase, SK; t 93.8 0.028 9.6E-07 49.6 2.7 21 211-231 4-24 (184)
350 1sq5_A Pantothenate kinase; P- 93.8 0.063 2.2E-06 51.9 5.4 25 207-231 78-102 (308)
351 2wsm_A Hydrogenase expression/ 93.8 0.036 1.2E-06 50.4 3.5 39 188-232 15-53 (221)
352 1ls1_A Signal recognition part 93.8 0.2 6.8E-06 48.0 8.8 24 209-232 98-121 (295)
353 1g8p_A Magnesium-chelatase 38 93.8 0.022 7.5E-07 56.0 2.1 45 182-232 24-68 (350)
354 1nn5_A Similar to deoxythymidy 93.8 0.029 9.9E-07 50.8 2.8 24 209-232 9-32 (215)
355 4e22_A Cytidylate kinase; P-lo 93.7 0.032 1.1E-06 52.2 3.1 23 209-231 27-49 (252)
356 3fwy_A Light-independent proto 93.7 0.035 1.2E-06 53.8 3.4 25 207-231 46-70 (314)
357 2yhs_A FTSY, cell division pro 93.7 0.12 4E-06 53.0 7.4 42 207-251 291-332 (503)
358 2f6r_A COA synthase, bifunctio 93.6 0.038 1.3E-06 52.7 3.4 24 207-230 73-96 (281)
359 2grj_A Dephospho-COA kinase; T 93.6 0.036 1.2E-06 49.5 3.1 25 207-231 10-34 (192)
360 2wwf_A Thymidilate kinase, put 93.6 0.031 1.1E-06 50.5 2.7 25 208-232 9-33 (212)
361 1m7g_A Adenylylsulfate kinase; 93.6 0.041 1.4E-06 49.9 3.4 25 208-232 24-48 (211)
362 3b9q_A Chloroplast SRP recepto 93.5 0.044 1.5E-06 52.8 3.6 25 207-231 98-122 (302)
363 1zd8_A GTP:AMP phosphotransfer 93.5 0.032 1.1E-06 51.3 2.5 23 209-231 7-29 (227)
364 3fb4_A Adenylate kinase; psych 93.4 0.039 1.3E-06 50.1 3.1 21 211-231 2-22 (216)
365 3un9_A NLR family member X1; l 93.4 0.0077 2.6E-07 60.1 -1.9 83 421-507 155-251 (372)
366 2v54_A DTMP kinase, thymidylat 93.4 0.038 1.3E-06 49.6 2.9 23 209-231 4-26 (204)
367 4a74_A DNA repair and recombin 93.4 0.041 1.4E-06 50.3 3.2 44 207-250 23-70 (231)
368 2ged_A SR-beta, signal recogni 93.4 0.058 2E-06 47.7 4.1 26 207-232 46-71 (193)
369 2ehv_A Hypothetical protein PH 93.4 0.04 1.4E-06 51.1 3.1 40 208-248 29-68 (251)
370 3lnc_A Guanylate kinase, GMP k 93.4 0.026 8.8E-07 52.0 1.7 22 209-230 27-48 (231)
371 1vht_A Dephospho-COA kinase; s 93.4 0.047 1.6E-06 49.7 3.5 23 209-231 4-26 (218)
372 3tif_A Uncharacterized ABC tra 93.3 0.042 1.4E-06 50.9 3.1 24 208-231 30-53 (235)
373 2i3b_A HCR-ntpase, human cance 93.3 0.036 1.2E-06 49.4 2.5 22 211-232 3-24 (189)
374 3dl0_A Adenylate kinase; phosp 93.3 0.042 1.5E-06 49.9 3.1 21 211-231 2-22 (216)
375 2onk_A Molybdate/tungstate ABC 93.3 0.042 1.4E-06 51.0 3.0 22 210-231 25-46 (240)
376 3ogk_B Coronatine-insensitive 93.3 0.027 9.2E-07 59.7 1.9 85 420-506 219-304 (592)
377 2f1r_A Molybdopterin-guanine d 93.3 0.026 8.9E-07 49.4 1.5 22 210-231 3-24 (171)
378 1zak_A Adenylate kinase; ATP:A 93.3 0.032 1.1E-06 51.0 2.2 23 209-231 5-27 (222)
379 2pcj_A ABC transporter, lipopr 93.2 0.042 1.4E-06 50.4 2.9 23 209-231 30-52 (224)
380 3be4_A Adenylate kinase; malar 93.1 0.038 1.3E-06 50.3 2.5 23 209-231 5-27 (217)
381 1gtv_A TMK, thymidylate kinase 93.1 0.022 7.4E-07 51.6 0.8 21 211-231 2-22 (214)
382 3p32_A Probable GTPase RV1496/ 93.1 0.09 3.1E-06 51.9 5.3 37 191-231 65-101 (355)
383 2q6t_A DNAB replication FORK h 93.0 0.32 1.1E-05 49.5 9.5 53 208-263 199-251 (444)
384 2vp4_A Deoxynucleoside kinase; 93.0 0.056 1.9E-06 49.7 3.5 25 207-231 18-42 (230)
385 4akg_A Glutathione S-transfera 93.0 0.53 1.8E-05 58.1 12.6 139 210-358 1268-1431(2695)
386 3b85_A Phosphate starvation-in 93.0 0.042 1.4E-06 49.8 2.5 22 210-231 23-44 (208)
387 3cmu_A Protein RECA, recombina 93.0 0.15 5E-06 60.9 7.6 85 207-298 1425-1515(2050)
388 3gfo_A Cobalt import ATP-bindi 92.9 0.05 1.7E-06 51.6 3.1 23 209-231 34-56 (275)
389 2cbz_A Multidrug resistance-as 92.9 0.05 1.7E-06 50.4 3.0 24 208-231 30-53 (237)
390 2r6a_A DNAB helicase, replicat 92.9 0.22 7.6E-06 50.9 8.2 51 208-261 202-252 (454)
391 3llm_A ATP-dependent RNA helic 92.9 0.28 9.6E-06 45.1 8.2 89 210-299 77-187 (235)
392 1np6_A Molybdopterin-guanine d 92.9 0.052 1.8E-06 47.6 2.9 25 208-232 5-29 (174)
393 1b0u_A Histidine permease; ABC 92.9 0.051 1.8E-06 51.2 3.1 24 208-231 31-54 (262)
394 2zej_A Dardarin, leucine-rich 92.8 0.053 1.8E-06 47.7 2.9 22 211-232 4-25 (184)
395 2og2_A Putative signal recogni 92.8 0.061 2.1E-06 53.0 3.6 25 207-231 155-179 (359)
396 1mv5_A LMRA, multidrug resista 92.8 0.06 2.1E-06 50.1 3.4 24 208-231 27-50 (243)
397 1ji0_A ABC transporter; ATP bi 92.8 0.055 1.9E-06 50.2 3.1 23 209-231 32-54 (240)
398 3sb4_A Hypothetical leucine ri 92.8 0.13 4.6E-06 49.9 6.1 81 420-506 225-308 (329)
399 3ake_A Cytidylate kinase; CMP 92.8 0.056 1.9E-06 48.5 3.1 21 211-231 4-24 (208)
400 3l0o_A Transcription terminati 92.8 0.08 2.7E-06 52.2 4.2 55 191-251 162-217 (427)
401 4g1u_C Hemin import ATP-bindin 92.7 0.056 1.9E-06 51.0 3.0 23 209-231 37-59 (266)
402 1g6h_A High-affinity branched- 92.7 0.057 1.9E-06 50.7 3.1 23 209-231 33-55 (257)
403 2wji_A Ferrous iron transport 92.7 0.078 2.7E-06 45.7 3.7 23 210-232 4-26 (165)
404 2olj_A Amino acid ABC transpor 92.7 0.058 2E-06 50.8 3.1 24 208-231 49-72 (263)
405 2d2e_A SUFC protein; ABC-ATPas 92.7 0.06 2E-06 50.3 3.2 23 209-231 29-51 (250)
406 3nwj_A ATSK2; P loop, shikimat 92.7 0.048 1.7E-06 50.9 2.5 23 209-231 48-70 (250)
407 1sgw_A Putative ABC transporte 92.6 0.05 1.7E-06 49.5 2.5 23 209-231 35-57 (214)
408 3a8t_A Adenylate isopentenyltr 92.6 0.072 2.5E-06 51.8 3.7 24 208-231 39-62 (339)
409 3e1s_A Exodeoxyribonuclease V, 92.6 0.13 4.5E-06 54.2 6.0 22 210-231 205-226 (574)
410 1yrb_A ATP(GTP)binding protein 92.6 0.078 2.7E-06 49.6 4.0 25 207-231 12-36 (262)
411 2ff7_A Alpha-hemolysin translo 92.6 0.06 2.1E-06 50.2 3.1 23 209-231 35-57 (247)
412 2pze_A Cystic fibrosis transme 92.6 0.06 2.1E-06 49.5 3.1 23 209-231 34-56 (229)
413 2xb4_A Adenylate kinase; ATP-b 92.6 0.057 2E-06 49.4 2.9 21 211-231 2-22 (223)
414 4eaq_A DTMP kinase, thymidylat 92.6 0.14 4.8E-06 47.0 5.5 25 208-232 25-49 (229)
415 3d3q_A TRNA delta(2)-isopenten 92.6 0.061 2.1E-06 52.4 3.2 22 210-231 8-29 (340)
416 3r20_A Cytidylate kinase; stru 92.6 0.062 2.1E-06 49.5 3.0 23 209-231 9-31 (233)
417 1oix_A RAS-related protein RAB 92.6 0.077 2.6E-06 47.1 3.6 25 208-232 28-52 (191)
418 1tue_A Replication protein E1; 92.5 0.076 2.6E-06 47.6 3.5 37 191-232 45-81 (212)
419 1e4v_A Adenylate kinase; trans 92.5 0.057 1.9E-06 49.0 2.7 21 211-231 2-22 (214)
420 1vpl_A ABC transporter, ATP-bi 92.5 0.063 2.1E-06 50.3 3.1 24 208-231 40-63 (256)
421 2zu0_C Probable ATP-dependent 92.5 0.064 2.2E-06 50.6 3.1 24 208-231 45-68 (267)
422 1ny5_A Transcriptional regulat 92.5 0.42 1.4E-05 47.7 9.3 45 183-231 138-182 (387)
423 2eyu_A Twitching motility prot 92.5 0.078 2.7E-06 49.9 3.7 110 208-331 24-136 (261)
424 2ixe_A Antigen peptide transpo 92.4 0.065 2.2E-06 50.7 3.1 24 208-231 44-67 (271)
425 2qi9_C Vitamin B12 import ATP- 92.4 0.066 2.3E-06 49.9 3.1 23 209-231 26-48 (249)
426 2ghi_A Transport protein; mult 92.4 0.064 2.2E-06 50.4 3.0 23 209-231 46-68 (260)
427 2f9l_A RAB11B, member RAS onco 92.4 0.066 2.3E-06 47.8 2.9 24 209-232 5-28 (199)
428 3zvl_A Bifunctional polynucleo 92.3 0.071 2.4E-06 53.9 3.4 26 207-232 256-281 (416)
429 3exa_A TRNA delta(2)-isopenten 92.3 0.073 2.5E-06 51.1 3.2 23 209-231 3-25 (322)
430 1ak2_A Adenylate kinase isoenz 92.3 0.067 2.3E-06 49.3 2.9 23 209-231 16-38 (233)
431 2dyk_A GTP-binding protein; GT 92.3 0.078 2.7E-06 45.1 3.2 23 210-232 2-24 (161)
432 2yz2_A Putative ABC transporte 92.3 0.069 2.4E-06 50.4 3.1 24 208-231 32-55 (266)
433 2nq2_C Hypothetical ABC transp 92.3 0.069 2.4E-06 50.0 3.0 23 209-231 31-53 (253)
434 3rfe_A Platelet glycoprotein I 92.2 0.17 5.9E-06 41.8 5.1 46 457-507 19-67 (130)
435 3ld9_A DTMP kinase, thymidylat 92.2 0.25 8.5E-06 45.1 6.6 56 207-262 19-74 (223)
436 2v9p_A Replication protein E1; 92.2 0.069 2.4E-06 51.3 3.0 25 207-231 124-148 (305)
437 2ihy_A ABC transporter, ATP-bi 92.2 0.071 2.4E-06 50.7 3.1 23 209-231 47-69 (279)
438 3k1j_A LON protease, ATP-depen 92.2 0.065 2.2E-06 57.1 3.0 41 183-231 42-82 (604)
439 3foz_A TRNA delta(2)-isopenten 92.2 0.083 2.9E-06 50.6 3.5 24 208-231 9-32 (316)
440 3crm_A TRNA delta(2)-isopenten 92.2 0.073 2.5E-06 51.5 3.1 22 210-231 6-27 (323)
441 1ltq_A Polynucleotide kinase; 92.2 0.073 2.5E-06 51.1 3.1 22 210-231 3-24 (301)
442 2dr3_A UPF0273 protein PH0284; 92.2 0.11 3.7E-06 48.0 4.2 41 208-250 22-62 (247)
443 1a7j_A Phosphoribulokinase; tr 92.1 0.041 1.4E-06 52.7 1.3 24 208-231 4-27 (290)
444 2wjg_A FEOB, ferrous iron tran 92.1 0.1 3.4E-06 45.9 3.7 25 208-232 6-30 (188)
445 1q57_A DNA primase/helicase; d 92.0 0.52 1.8E-05 48.8 9.7 54 208-264 241-294 (503)
446 2qe7_A ATP synthase subunit al 92.0 0.3 1E-05 49.8 7.5 96 193-297 151-263 (502)
447 2ce2_X GTPase HRAS; signaling 92.0 0.071 2.4E-06 45.4 2.6 22 211-232 5-26 (166)
448 2lkc_A Translation initiation 92.0 0.11 3.7E-06 45.0 3.8 26 207-232 6-31 (178)
449 3bgw_A DNAB-like replicative h 92.0 0.42 1.4E-05 48.6 8.6 52 208-263 196-247 (444)
450 2v3c_C SRP54, signal recogniti 91.9 0.1 3.6E-06 52.8 4.1 42 191-232 78-122 (432)
451 1g41_A Heat shock protein HSLU 91.9 0.14 4.6E-06 51.9 4.8 50 182-231 15-72 (444)
452 4edh_A DTMP kinase, thymidylat 91.9 0.32 1.1E-05 44.0 7.0 24 209-232 6-29 (213)
453 3sop_A Neuronal-specific septi 91.8 0.079 2.7E-06 50.1 2.9 21 211-231 4-24 (270)
454 1q3t_A Cytidylate kinase; nucl 91.8 0.088 3E-06 48.6 3.1 25 207-231 14-38 (236)
455 1z2a_A RAS-related protein RAB 91.7 0.11 3.7E-06 44.4 3.5 24 209-232 5-28 (168)
456 2qmh_A HPR kinase/phosphorylas 91.6 0.1 3.6E-06 46.4 3.3 24 209-232 34-57 (205)
457 2nzj_A GTP-binding protein REM 91.6 0.13 4.5E-06 44.3 3.9 24 209-232 4-27 (175)
458 2pjz_A Hypothetical protein ST 91.5 0.095 3.3E-06 49.3 3.1 23 209-231 30-52 (263)
459 2r9v_A ATP synthase subunit al 91.5 0.39 1.3E-05 49.0 7.7 96 193-297 164-276 (515)
460 2erx_A GTP-binding protein DI- 91.5 0.099 3.4E-06 44.9 3.0 23 210-232 4-26 (172)
461 3q72_A GTP-binding protein RAD 91.5 0.09 3.1E-06 45.0 2.7 22 211-232 4-25 (166)
462 3nh6_A ATP-binding cassette SU 91.5 0.076 2.6E-06 51.1 2.4 24 208-231 79-102 (306)
463 3q85_A GTP-binding protein REM 91.5 0.1 3.5E-06 44.8 3.0 22 210-231 3-24 (169)
464 3con_A GTPase NRAS; structural 91.4 0.097 3.3E-06 46.1 2.9 23 210-232 22-44 (190)
465 1nij_A Hypothetical protein YJ 91.4 0.091 3.1E-06 51.0 2.9 24 208-231 3-26 (318)
466 1u8z_A RAS-related protein RAL 91.4 0.095 3.2E-06 44.7 2.8 24 209-232 4-27 (168)
467 3kta_A Chromosome segregation 91.4 0.1 3.4E-06 45.8 3.0 21 211-231 28-48 (182)
468 3lv8_A DTMP kinase, thymidylat 91.4 0.27 9.2E-06 45.3 6.0 52 209-261 27-78 (236)
469 1svm_A Large T antigen; AAA+ f 91.4 0.1 3.4E-06 51.9 3.2 25 207-231 167-191 (377)
470 1nlf_A Regulatory protein REPA 91.4 0.095 3.3E-06 49.7 3.0 24 208-231 29-52 (279)
471 3un9_A NLR family member X1; l 91.4 0.018 6.1E-07 57.4 -2.2 84 420-507 125-223 (372)
472 1svi_A GTP-binding protein YSX 91.3 0.12 4E-06 45.7 3.3 25 208-232 22-46 (195)
473 1cr0_A DNA primase/helicase; R 91.3 0.098 3.3E-06 50.1 3.0 52 208-263 34-86 (296)
474 1c1y_A RAS-related protein RAP 91.3 0.1 3.4E-06 44.6 2.8 22 211-232 5-26 (167)
475 2gj8_A MNME, tRNA modification 91.3 0.1 3.5E-06 45.4 2.8 23 210-232 5-27 (172)
476 1z08_A RAS-related protein RAB 91.2 0.1 3.4E-06 44.8 2.7 25 208-232 5-29 (170)
477 1ek0_A Protein (GTP-binding pr 91.2 0.1 3.5E-06 44.6 2.8 22 211-232 5-26 (170)
478 1fzq_A ADP-ribosylation factor 91.2 0.14 4.7E-06 44.9 3.6 25 208-232 15-39 (181)
479 2ocp_A DGK, deoxyguanosine kin 91.2 0.11 3.7E-06 48.1 3.1 24 209-232 2-25 (241)
480 1kao_A RAP2A; GTP-binding prot 91.1 0.1 3.6E-06 44.4 2.7 23 210-232 4-26 (167)
481 1z0j_A RAB-22, RAS-related pro 91.1 0.11 3.6E-06 44.6 2.7 24 209-232 6-29 (170)
482 3cmu_A Protein RECA, recombina 91.1 0.34 1.1E-05 57.9 7.6 86 207-299 381-472 (2050)
483 2bbs_A Cystic fibrosis transme 91.0 0.1 3.5E-06 49.8 2.8 24 208-231 63-86 (290)
484 1ky3_A GTP-binding protein YPT 91.0 0.14 4.7E-06 44.4 3.5 26 207-232 6-31 (182)
485 3ihw_A Centg3; RAS, centaurin, 91.0 0.11 3.7E-06 45.8 2.7 25 208-232 19-43 (184)
486 1m7b_A RND3/RHOE small GTP-bin 91.0 0.1 3.5E-06 45.7 2.6 25 208-232 6-30 (184)
487 1nrj_B SR-beta, signal recogni 91.0 0.12 4E-06 46.7 3.0 26 207-232 10-35 (218)
488 4tmk_A Protein (thymidylate ki 90.9 0.36 1.2E-05 43.7 6.2 52 210-262 4-55 (213)
489 2cxx_A Probable GTP-binding pr 90.9 0.11 3.9E-06 45.5 2.8 22 211-232 3-24 (190)
490 2ck3_A ATP synthase subunit al 90.9 0.59 2E-05 47.8 8.3 100 193-297 151-271 (510)
491 3end_A Light-independent proto 90.9 0.13 4.5E-06 49.4 3.5 40 207-248 39-78 (307)
492 3t1o_A Gliding protein MGLA; G 90.9 0.11 3.7E-06 45.9 2.7 24 208-231 13-36 (198)
493 2fn4_A P23, RAS-related protei 90.9 0.16 5.6E-06 43.9 3.8 26 207-232 7-32 (181)
494 1wms_A RAB-9, RAB9, RAS-relate 90.9 0.11 3.9E-06 44.9 2.7 25 208-232 6-30 (177)
495 3vr4_A V-type sodium ATPase ca 90.8 0.87 3E-05 47.1 9.5 59 193-260 221-280 (600)
496 2qtf_A Protein HFLX, GTP-bindi 90.8 0.29 9.9E-06 48.4 5.9 25 208-232 178-202 (364)
497 1r8s_A ADP-ribosylation factor 90.8 0.11 3.9E-06 44.2 2.7 21 212-232 3-23 (164)
498 2www_A Methylmalonic aciduria 90.8 0.14 4.8E-06 50.4 3.6 25 207-231 72-96 (349)
499 3v9p_A DTMP kinase, thymidylat 90.8 0.28 9.7E-06 44.9 5.4 24 209-232 25-48 (227)
500 3c5c_A RAS-like protein 12; GD 90.8 0.12 4E-06 45.6 2.7 25 208-232 20-44 (187)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.5e-33 Score=301.01 Aligned_cols=214 Identities=21% Similarity=0.266 Sum_probs=175.4
Q ss_pred eechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc--chhhhccCCceEEEEeCCch--hHHHHHHHH
Q 045152 185 CGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN--NDEVKRNFEKVIWVCVSDTF--EEIRVAKAI 260 (533)
Q Consensus 185 vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~l~~~i 260 (533)
|||+.++++|.++|.... ....++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.. +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699999999999996542 24689999999999999999999998 67899999999999999885 899999999
Q ss_pred HHHhCCCCC-------CCccHHHHHHHHHHHhCCc-eEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHHHh
Q 045152 261 IEGLGVSAS-------GLSEFESLMKQIQEYITRK-KFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSVAL 332 (533)
Q Consensus 261 l~~l~~~~~-------~~~~~~~l~~~l~~~l~~k-r~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~ 332 (533)
+.+++.... ...+.+.+...+++.+.++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986521 2234567789999999996 9999999999863222221 27999999999999998
Q ss_pred hhCC-CCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHHhhcccchHHHHHHHhhh
Q 045152 333 QLGS-IDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLLRSKSTVKEWQRILDSE 411 (533)
Q Consensus 333 ~~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~l~~~ 411 (533)
.++. ...|+|++|+.+++|+||.+.+|... ..+.+++++.+|+++|+|+||||+++|+.|+.+ + .+|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 8763 46799999999999999999987432 246778899999999999999999999999876 2 3454556655
Q ss_pred hhh
Q 045152 412 MWK 414 (533)
Q Consensus 412 ~~~ 414 (533)
.|.
T Consensus 355 l~~ 357 (549)
T 2a5y_B 355 LES 357 (549)
T ss_dssp HHH
T ss_pred hhc
Confidence 554
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=3e-26 Score=268.18 Aligned_cols=211 Identities=26% Similarity=0.395 Sum_probs=167.7
Q ss_pred cCCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhh-hccC-CceEEEEeCCch--hHHH
Q 045152 180 DEGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSDTF--EEIR 255 (533)
Q Consensus 180 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~--~~~~ 255 (533)
..+.||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ..+| +.++|+++++.. +...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 44569999999999999997543 46899999999999999999999997544 4445 677799998843 4455
Q ss_pred HHHHHHHHhCCCC----CCCccHHHHHHHHHHHhCCc--eEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchH
Q 045152 256 VAKAIIEGLGVSA----SGLSEFESLMKQIQEYITRK--KFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRS 329 (533)
Q Consensus 256 l~~~il~~l~~~~----~~~~~~~~l~~~l~~~l~~k--r~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~ 329 (533)
.+..++..+.... ....+.+.+...++..+.++ |+||||||||+. ..|..+ .+||+||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHH
Confidence 5777777776542 22356788889999999877 999999999865 334332 57899999999999
Q ss_pred HHhh-hCCCCeeeCCC-CChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHHhhcccchHHHHHH
Q 045152 330 VALQ-LGSIDIIPVKE-LAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLLRSKSTVKEWQRI 407 (533)
Q Consensus 330 v~~~-~~~~~~~~l~~-L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~ 407 (533)
++.. .+....+++++ |+.+++++||...++. ..+.+.+.+.+|+++|+|+||||+++|++|+.++ ..|..+
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~-----~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~ 341 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNM-----KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYY 341 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS-----CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCC-----ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHH
Confidence 9854 45567899996 9999999999988852 2345667899999999999999999999999875 467776
Q ss_pred Hhh
Q 045152 408 LDS 410 (533)
Q Consensus 408 l~~ 410 (533)
++.
T Consensus 342 l~~ 344 (1249)
T 3sfz_A 342 LRQ 344 (1249)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.94 E-value=8.1e-27 Score=253.86 Aligned_cols=199 Identities=22% Similarity=0.269 Sum_probs=153.8
Q ss_pred eeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCc-eEEEEeCCchhHHHHHHHHHH
Q 045152 184 VCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK-VIWVCVSDTFEEIRVAKAIIE 262 (533)
Q Consensus 184 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~l~~~il~ 262 (533)
.|||++++++|.++|... ...++|+|+||||+||||||+.+|++.+++.+|+. ++|+++++.++...++..|++
T Consensus 130 ~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 499999999999999743 23789999999999999999999988788999986 999999999888888877776
Q ss_pred HhCC---C---CCC-----CccHHHHHHHHHHHh---CCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecch
Q 045152 263 GLGV---S---ASG-----LSEFESLMKQIQEYI---TRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDR 328 (533)
Q Consensus 263 ~l~~---~---~~~-----~~~~~~l~~~l~~~l---~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~ 328 (533)
.++. . ..+ ..+.+.+...+++.+ .++|+||||||||+. +.|+.+ + +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccCh
Confidence 4321 1 000 123455666777765 789999999999984 445543 2 689999999999
Q ss_pred HHHhhhCCCCeeeCC------CCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHHhhccc-ch
Q 045152 329 SVALQLGSIDIIPVK------ELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLLRSKS-TV 401 (533)
Q Consensus 329 ~v~~~~~~~~~~~l~------~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~-~~ 401 (533)
.++..+.....+.++ +|+.+|||+||++... . . ..++..+| |+|+||||+++|+.|+.+. +.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g-~-~------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-C-R------PQDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHC-C-C------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcC-C-C------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 988655443456666 9999999999998832 1 1 22334444 9999999999999999885 67
Q ss_pred HHHHHH
Q 045152 402 KEWQRI 407 (533)
Q Consensus 402 ~~w~~~ 407 (533)
++|...
T Consensus 345 eeW~~~ 350 (1221)
T 1vt4_I 345 DNWKHV 350 (1221)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 788754
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=234.98 Aligned_cols=209 Identities=24% Similarity=0.330 Sum_probs=155.7
Q ss_pred CCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhh-hccC-CceEEEEeCCchh--HHHH
Q 045152 181 EGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSDTFE--EIRV 256 (533)
Q Consensus 181 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~l 256 (533)
.+.||||+.++++|.++|.... +..++|+|+||||+||||||..++++..+ ..+| +.++|++++.... ....
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~ 198 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMK 198 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHH
Confidence 4569999999999999996532 45789999999999999999999998666 7889 5899999876522 2222
Q ss_pred HHHHHHHhCCC----CCCCccHHHHHHHHHHHhCC--ceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHH
Q 045152 257 AKAIIEGLGVS----ASGLSEFESLMKQIQEYITR--KKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSV 330 (533)
Q Consensus 257 ~~~il~~l~~~----~~~~~~~~~l~~~l~~~l~~--kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v 330 (533)
+..+...++.. .....+.+.+...+...+.+ +++||||||+|+.. .+. ...+|++||||||++.+
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--~l~-------~l~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--VLK-------AFDSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--HHH-------TTCSSCEEEEEESCGGG
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--HHH-------HhcCCCeEEEECCCcHH
Confidence 33344455421 12334567777788887765 78999999998642 222 22568999999999988
Q ss_pred HhhhCCCCeeeC---CCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHHhhcccchHHHHHH
Q 045152 331 ALQLGSIDIIPV---KELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLLRSKSTVKEWQRI 407 (533)
Q Consensus 331 ~~~~~~~~~~~l---~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~ 407 (533)
+..+.. ..+.+ ++|+.+++++||...++. ......+.+.+|+++|+|+|||+..+|+.|+.+. ..|..+
T Consensus 270 ~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~-----~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~ 341 (591)
T 1z6t_A 270 TDSVMG-PKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYY 341 (591)
T ss_dssp GTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTS-----CGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHH
T ss_pred HHhcCC-CceEeecCCCCCHHHHHHHHHHHhCC-----CcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHH
Confidence 765432 33333 689999999999998852 1223456789999999999999999999998864 368776
Q ss_pred Hhh
Q 045152 408 LDS 410 (533)
Q Consensus 408 l~~ 410 (533)
++.
T Consensus 342 l~~ 344 (591)
T 1z6t_A 342 LKQ 344 (591)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.71 E-value=9.5e-18 Score=138.65 Aligned_cols=81 Identities=26% Similarity=0.472 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc--cccCChHHHHHHHHHHhhccchhhhH
Q 045152 4 AIVSSLLGQLTSVAADEVKQHVRLVTGVGEEVKKLTSNLRAIRAVLEDAEKR--QMQRDNAVTFWLDQLRDASYDMEDVL 81 (533)
Q Consensus 4 ~~v~~~l~kl~~~l~~~~~~e~~~~~~~~~~~~~L~~~L~~i~~~l~~ae~~--~~~~~~~~~~Wl~~lrd~ayd~eD~l 81 (533)
|+|+++++||+++ +.+|+.++.|+++++++|+++|++|++||.+|+.+ +.. +++++.|+++||++|||+||||
T Consensus 1 a~v~~ll~KL~~l----l~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~-d~~vk~W~~~vrdlaYD~ED~i 75 (115)
T 3qfl_A 1 AAISNLIPKLGEL----LTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQL-DSQDKLWADEVRELSYVIEDVV 75 (115)
T ss_dssp CTTCSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999 88999999999999999999999999999999987 445 8999999999999999999999
Q ss_pred HHHHHHHH
Q 045152 82 DEWTTARL 89 (533)
Q Consensus 82 D~~~~~~~ 89 (533)
|+|.|+..
T Consensus 76 D~f~~~~~ 83 (115)
T 3qfl_A 76 DKFLVQVD 83 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999875
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.55 E-value=2.5e-14 Score=143.36 Aligned_cols=197 Identities=15% Similarity=0.176 Sum_probs=129.0
Q ss_pred cCCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCch------hH
Q 045152 180 DEGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF------EE 253 (533)
Q Consensus 180 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~------~~ 253 (533)
.+..|+||+++++.+.+++.. + +++.|+|++|+|||||++.+.+.. . .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~------~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN------Y--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH------C--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhc------C--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 445799999999999998842 1 689999999999999999998642 2 6777765432 45
Q ss_pred HHHHHHHHHHhCC-----------------C-CCCCccHHHHHHHHHHHhCC-ceEEEEEeCCCCCCc-------cccch
Q 045152 254 IRVAKAIIEGLGV-----------------S-ASGLSEFESLMKQIQEYITR-KKFFLVLDDVWDGDY-------KKWNP 307 (533)
Q Consensus 254 ~~l~~~il~~l~~-----------------~-~~~~~~~~~l~~~l~~~l~~-kr~LlVLDdv~~~~~-------~~~~~ 307 (533)
..++..+.+.+.. . .....+...+...+.+.... ++.+|||||++..+. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 5666666655432 0 00113455566666665543 389999999976432 11222
Q ss_pred hhhcccCCCCCceEEEEecchHHHhhh-----------CC-CCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHH
Q 045152 308 FFSCLKNGHHESKILITTRDRSVALQL-----------GS-IDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGR 375 (533)
Q Consensus 308 l~~~l~~~~~gs~IiiTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~ 375 (533)
+...... .++.++|+|++.......+ +. ...+++.+|+.+++.+++..... ..... .-.+...
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~-~~~~~---~~~~~~~ 229 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFR-EVNLD---VPENEIE 229 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHH-TTTCC---CCHHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHH-HcCCC---CCHHHHH
Confidence 2222222 2467899998876432211 11 24789999999999999987532 11111 1235678
Q ss_pred HHHhHhCCCcchhHHHHHHhh
Q 045152 376 KIAHKCKGLPLAAKVIWNLLR 396 (533)
Q Consensus 376 ~I~~~c~GlPLai~~~~~~L~ 396 (533)
.|+..|+|+|+++..++..+.
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~ 250 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYL 250 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHh
Confidence 999999999999999886543
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.54 E-value=4e-14 Score=145.35 Aligned_cols=211 Identities=15% Similarity=0.067 Sum_probs=133.7
Q ss_pred CCceeechhhHHHHHHHH-hCCCccCCCCeEEEEE--EcCCCChHHHHHHHHhcchhhh---ccCC-ceEEEEeCCchhH
Q 045152 181 EGEVCGRVEEKNELLSKL-LCESSEQQKGLHVISL--VGLGGIGKTTLAQLAYNNDEVK---RNFE-KVIWVCVSDTFEE 253 (533)
Q Consensus 181 ~~~~vGR~~e~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~---~~F~-~~~wv~vs~~~~~ 253 (533)
+..++||+++++.+.+++ .............+.| +|++|+||||||+.+++..... ..|. ..+|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 4321100023456666 9999999999999999753221 0122 3567776666778
Q ss_pred HHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHhC--CceEEEEEeCCCCCCc------cccchhhhcccCC---C--CCc
Q 045152 254 IRVAKAIIEGLGVSASG-LSEFESLMKQIQEYIT--RKKFFLVLDDVWDGDY------KKWNPFFSCLKNG---H--HES 319 (533)
Q Consensus 254 ~~l~~~il~~l~~~~~~-~~~~~~l~~~l~~~l~--~kr~LlVLDdv~~~~~------~~~~~l~~~l~~~---~--~gs 319 (533)
..++..++.+++..... ..+...+...+.+.+. +++++|||||+|.... +.+..+...+... . ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 88999999998764321 2334555666666654 6799999999976321 2233233333211 2 344
Q ss_pred eEEEEecchHHHhhhC--------C-CCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhC------CC
Q 045152 320 KILITTRDRSVALQLG--------S-IDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCK------GL 384 (533)
Q Consensus 320 ~IiiTtR~~~v~~~~~--------~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~------Gl 384 (533)
.+|+||+...+...+. . ...+.+++++.++.+++|...+...... ..--.+....|++.|+ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCCCc
Confidence 5787887655332111 1 2239999999999999998654211110 1112456788999999 99
Q ss_pred cchhHHHHH
Q 045152 385 PLAAKVIWN 393 (533)
Q Consensus 385 PLai~~~~~ 393 (533)
|..+..+..
T Consensus 259 p~~~~~l~~ 267 (412)
T 1w5s_A 259 ARRAIVALK 267 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 976655543
No 8
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=9.5e-14 Score=139.49 Aligned_cols=196 Identities=14% Similarity=0.188 Sum_probs=123.5
Q ss_pred cCCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-----hhHH
Q 045152 180 DEGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-----FEEI 254 (533)
Q Consensus 180 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~ 254 (533)
.+..|+||+++++.|.+ +. . +++.|+|++|+|||||++.+.+.. .. ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHH
Confidence 44579999999999999 72 1 589999999999999999998742 22 2578876532 2333
Q ss_pred HHHHHHHHHhC--------------C------CCC---------CCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc---
Q 045152 255 RVAKAIIEGLG--------------V------SAS---------GLSEFESLMKQIQEYITRKKFFLVLDDVWDGDY--- 302 (533)
Q Consensus 255 ~l~~~il~~l~--------------~------~~~---------~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~--- 302 (533)
.++..+.+.+. . ... .......+...+.+... ++++|||||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 33333333221 0 000 12234555555554433 489999999976431
Q ss_pred cccchhhhcccCCCCCceEEEEecchHHHhhh-----------CC-CCeeeCCCCChHhhHHHHHHhhccCCCccccccc
Q 045152 303 KKWNPFFSCLKNGHHESKILITTRDRSVALQL-----------GS-IDIIPVKELAEEECWSLLERLAFFRRSVDDHEKL 370 (533)
Q Consensus 303 ~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l 370 (533)
..+..+...+.....+.++|+|++.......+ +. ...+++.+|+.+++.+++..... ... ....
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~-~~~-~~~~-- 230 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ-EAD-IDFK-- 230 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH-HHT-CCCC--
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH-HcC-CCCC--
Confidence 22333323222222467899999876532211 11 25789999999999999987542 101 1111
Q ss_pred hHHHHHHHhHhCCCcchhHHHHHHhhc
Q 045152 371 EPIGRKIAHKCKGLPLAAKVIWNLLRS 397 (533)
Q Consensus 371 ~~~~~~I~~~c~GlPLai~~~~~~L~~ 397 (533)
.. ..|+..|+|+|+++..++..+..
T Consensus 231 -~~-~~i~~~t~G~P~~l~~~~~~~~~ 255 (357)
T 2fna_A 231 -DY-EVVYEKIGGIPGWLTYFGFIYLD 255 (357)
T ss_dssp -CH-HHHHHHHCSCHHHHHHHHHHHHH
T ss_pred -cH-HHHHHHhCCCHHHHHHHHHHHcc
Confidence 12 78999999999999999877653
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=3.2e-12 Score=129.90 Aligned_cols=226 Identities=13% Similarity=0.051 Sum_probs=140.6
Q ss_pred CCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhh----cc--CCceEEEEeCCch-hH
Q 045152 181 EGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK----RN--FEKVIWVCVSDTF-EE 253 (533)
Q Consensus 181 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~ 253 (533)
+..++||+++++++..++..... ....+.+.|+|++|+||||||+.+++...-. .. ....+|+++.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 36799999999999988854221 2345689999999999999999998742111 01 3356777766655 77
Q ss_pred HHHHHHHHHHhCCCCC--CCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchh-hhcccCCCCCceEEEEecchHH
Q 045152 254 IRVAKAIIEGLGVSAS--GLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPF-FSCLKNGHHESKILITTRDRSV 330 (533)
Q Consensus 254 ~~l~~~il~~l~~~~~--~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l-~~~l~~~~~gs~IiiTtR~~~v 330 (533)
..++..++..+.+... .......+...+.+.+..++.+|||||++......+... ...+.....+..+|+||+....
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 7888888888733211 122345566777777877666999999966432221222 2223222267788889886532
Q ss_pred H----hhh--CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhC---CCcch-hHHHHHHh--h--
Q 045152 331 A----LQL--GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCK---GLPLA-AKVIWNLL--R-- 396 (533)
Q Consensus 331 ~----~~~--~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~---GlPLa-i~~~~~~L--~-- 396 (533)
. ..+ .....+.+++++.++..++|...+..+.. ...--.+....+++.++ |.|.. +..+-... .
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLI--KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSC--TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcc--cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 1 111 11238999999999999999987531100 01112345677888887 88873 33332222 2
Q ss_pred -cccchHHHHHHHhh
Q 045152 397 -SKSTVKEWQRILDS 410 (533)
Q Consensus 397 -~~~~~~~w~~~l~~ 410 (533)
..-+.+.+..+++.
T Consensus 255 ~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 255 GGIIRKEHVDKAIVD 269 (384)
T ss_dssp SSCCCHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHH
Confidence 12256677666654
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.35 E-value=9.1e-12 Score=126.44 Aligned_cols=203 Identities=18% Similarity=0.093 Sum_probs=129.9
Q ss_pred CCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhh----ccCCceEEEEeCCchhHHHH
Q 045152 181 EGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSDTFEEIRV 256 (533)
Q Consensus 181 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~l 256 (533)
+..++||+.+++.+..++.... .......+.|+|++|+||||||+.+++...-. ..--..+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 3679999999999999885432 12346689999999999999999998742111 00234677887777788889
Q ss_pred HHHHHHHhCCCCCC-CccHHHHHHHHHHHh--CCceEEEEEeCCCCCCcc--ccchhhhccc---CC--CCCceEEEEec
Q 045152 257 AKAIIEGLGVSASG-LSEFESLMKQIQEYI--TRKKFFLVLDDVWDGDYK--KWNPFFSCLK---NG--HHESKILITTR 326 (533)
Q Consensus 257 ~~~il~~l~~~~~~-~~~~~~l~~~l~~~l--~~kr~LlVLDdv~~~~~~--~~~~l~~~l~---~~--~~gs~IiiTtR 326 (533)
+..++..++..... ......+...+.+.+ .+++.+|||||++..... ..+.+...+. .. ..+..+|+||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999998764322 233555566666666 356899999999764322 1222322222 11 34567777877
Q ss_pred chHHHh----h-hCCC--CeeeCCCCChHhhHHHHHHhhccC-CCccccccchHHHHHHHhHhC---CCcchh
Q 045152 327 DRSVAL----Q-LGSI--DIIPVKELAEEECWSLLERLAFFR-RSVDDHEKLEPIGRKIAHKCK---GLPLAA 388 (533)
Q Consensus 327 ~~~v~~----~-~~~~--~~~~l~~L~~~~~~~Lf~~~a~~~-~~~~~~~~l~~~~~~I~~~c~---GlPLai 388 (533)
...... . .... ..+.+++++.++..+++...+... ..... -.+....+++.++ |.|..+
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~G~~r~~ 245 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL---DPDVVPLCAALAAREHGDARRA 245 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB---CSSHHHHHHHHHHSSSCCHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC---CHHHHHHHHHHHHHhccCHHHH
Confidence 652211 1 1111 478999999999999999875311 11111 2345677888887 999433
No 11
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.35 E-value=1.1e-11 Score=117.00 Aligned_cols=197 Identities=17% Similarity=0.137 Sum_probs=118.0
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+++||+..++.+..++.... ....+.|+|++|+||||||+.+++.......+.. + ......... .+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~--~-~~~~~~~~~----~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA--T-PCGVCDNCR----EIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS--S-CCSCSHHHH----HHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--C-CCcccHHHH----HHh
Confidence 358999999999999985432 2358899999999999999999864221111100 0 000000000 000
Q ss_pred HHhC-----CCCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHH-H
Q 045152 262 EGLG-----VSASGLSEFESLMKQIQEY----ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSV-A 331 (533)
Q Consensus 262 ~~l~-----~~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v-~ 331 (533)
.... ...........+...+... ..+++.+|||||++..+...++.+...+.....+..+|+||+.... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 0000 0000001111122222111 1356799999999776555667777776665567888888876432 1
Q ss_pred h-hhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHH
Q 045152 332 L-QLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNL 394 (533)
Q Consensus 332 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 394 (533)
. .......+++++++.++..+++...+.... . .--.+....|++.|+|+|..+..+...
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~-~---~~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEH-I---AHEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTT-C---CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 112246799999999999999998764211 1 112455688999999999998876543
No 12
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.34 E-value=1.9e-11 Score=124.33 Aligned_cols=206 Identities=16% Similarity=0.116 Sum_probs=136.0
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhcc-CCceEEEEeCCchhHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSDTFEEIRVAKAI 260 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~l~~~i 260 (533)
+.++||+.+++.+..++........+..+.+.|+|++|+|||||++.+.+. .... -...+|++++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 679999999999999886532101123348999999999999999999874 2222 1346777777777788899999
Q ss_pred HHHhCCCCCC-CccHHHHHHHHHHHhC--CceEEEEEeCCCCCCccccchhhhcccCCC----CCceEEEEecchHHHhh
Q 045152 261 IEGLGVSASG-LSEFESLMKQIQEYIT--RKKFFLVLDDVWDGDYKKWNPFFSCLKNGH----HESKILITTRDRSVALQ 333 (533)
Q Consensus 261 l~~l~~~~~~-~~~~~~l~~~l~~~l~--~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~----~gs~IiiTtR~~~v~~~ 333 (533)
+..++..... ......+...+...+. +++.+|||||++..+......+...+.... .+..+|++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9888654322 2234555555555553 568899999997764444445544443211 36678888876644332
Q ss_pred hC-------CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHh---------CCCcchhHHH
Q 045152 334 LG-------SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKC---------KGLPLAAKVI 391 (533)
Q Consensus 334 ~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c---------~GlPLai~~~ 391 (533)
+. ....+.+++++.++..+++...+..... ...--.+....|++.+ .|.|..+..+
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 21 1236999999999999999887531110 0112245667888999 7887655444
No 13
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=5.8e-12 Score=127.77 Aligned_cols=204 Identities=17% Similarity=0.122 Sum_probs=129.0
Q ss_pred CCceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccC---CceEEEEeCCchhHHHHH
Q 045152 181 EGEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVSDTFEEIRVA 257 (533)
Q Consensus 181 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~l~ 257 (533)
+..++||+.+++.+.+++..... ......+.|+|++|+||||||+.+++. ....+ ...+|+++....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 46799999999999998864311 234668999999999999999999874 33332 246677766655667778
Q ss_pred HHHHHHhCCCCCC-CccHHHHHHHHHHHhC--CceEEEEEeCCCCCC----ccccchhhhcccC-CCCCceEEEEecchH
Q 045152 258 KAIIEGLGVSASG-LSEFESLMKQIQEYIT--RKKFFLVLDDVWDGD----YKKWNPFFSCLKN-GHHESKILITTRDRS 329 (533)
Q Consensus 258 ~~il~~l~~~~~~-~~~~~~l~~~l~~~l~--~kr~LlVLDdv~~~~----~~~~~~l~~~l~~-~~~gs~IiiTtR~~~ 329 (533)
..++..++..... ..+.......+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 8888777553221 2234555555655553 458999999996532 1223333333321 233556788887654
Q ss_pred HHhhhC-----C--CCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhC---CCcchhHH
Q 045152 330 VALQLG-----S--IDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCK---GLPLAAKV 390 (533)
Q Consensus 330 v~~~~~-----~--~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~---GlPLai~~ 390 (533)
....+. . ...+.+++++.++..+++...+..... ...--.+....+++.++ |.|..+..
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ 243 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALD 243 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 322211 1 147999999999999999986521110 11122455677777777 99985433
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.29 E-value=5.1e-11 Score=110.80 Aligned_cols=184 Identities=15% Similarity=-0.010 Sum_probs=115.0
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeCCchhHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEEIRVAKAI 260 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~i 260 (533)
.+++|++..++.+.+++... ....+.|+|++|+|||+||+.+++... ...+. ..+.++.+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 36899999999999999543 223489999999999999999986321 11222 23344433333322222111
Q ss_pred HHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHHH-h-hhCCCC
Q 045152 261 IEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSVA-L-QLGSID 338 (533)
Q Consensus 261 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~-~-~~~~~~ 338 (533)
........ ...+++.+|||||++.......+.+...+.....+.++|+||+..... . ......
T Consensus 90 ~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 KEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 11110000 013578899999997765445556666665555677888888765321 1 112244
Q ss_pred eeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 339 IIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 339 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
.+.+.+++.++..+++.+.+..... . --.+....+++.++|.|..+..+
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGV-K---ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 7899999999999999887632111 1 12355678899999999965544
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=4.3e-10 Score=111.10 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=114.6
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccC-CceEEEEeCCchhHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTFEEIRVAKAI 260 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~l~~~i 260 (533)
.+++|++..++.+..++... ....+.|+|++|+||||+|+.+++... ...+ ...++++.+....... .+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHH
Confidence 46899999999999998543 223389999999999999999987421 1111 1233444333222111 1111
Q ss_pred HHHhCCCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHH-Hh-hhCCC
Q 045152 261 IEGLGVSASGLSEFESLMKQIQEYI-TRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSV-AL-QLGSI 337 (533)
Q Consensus 261 l~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v-~~-~~~~~ 337 (533)
+..+... ...+ .+++.++|+||++......++.+...+.....++++|+||+...- .. .....
T Consensus 93 ~~~~~~~--------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQK--------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHB--------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhc--------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 2111100 0011 346889999999876555566666666655567788888866421 11 12234
Q ss_pred CeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcch-hHHHHH
Q 045152 338 DIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLA-AKVIWN 393 (533)
Q Consensus 338 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa-i~~~~~ 393 (533)
..+++.+++.++..+++...+...+. . --.+....|++.++|.|.. +..+..
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDV-K---YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 58999999999999999886631111 1 1235568899999999955 444433
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=3.4e-09 Score=104.75 Aligned_cols=183 Identities=14% Similarity=0.056 Sum_probs=113.8
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccC-CceEEEEeCCchhHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTFEEIRVAKAI 260 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~l~~~i 260 (533)
.+++|++..++.+..++... ....+.|+|++|+||||+|+.+++... ...+ ...+.++.+.......+ ...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~-~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINVI-REK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHTT-HHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchHHH-HHH
Confidence 35899999999999988543 333489999999999999999987421 1111 12334443332221111 111
Q ss_pred HHHhCCCCCCCccHHHHHHHHHH--HhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHH-Hhh-hCC
Q 045152 261 IEGLGVSASGLSEFESLMKQIQE--YITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSV-ALQ-LGS 336 (533)
Q Consensus 261 l~~l~~~~~~~~~~~~l~~~l~~--~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v-~~~-~~~ 336 (533)
+..+ ... ...+++.++|+||++......++.+...+.....++++|+||..... ... ...
T Consensus 97 ~~~~----------------~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 97 VKEF----------------ARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HHHH----------------HHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred HHHH----------------HhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 1110 000 11256789999999776555566676666655567888888876432 111 112
Q ss_pred CCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHH
Q 045152 337 IDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIW 392 (533)
Q Consensus 337 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 392 (533)
...+.+.+++.++...++...+...+ .. --.+....|++.++|.|..+..+.
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~-~~---~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEG-LE---LTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTT-CE---ECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcC-CC---CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 34789999999999999987764211 11 123556788999999998765443
No 17
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.4e-08 Score=98.91 Aligned_cols=172 Identities=10% Similarity=-0.002 Sum_probs=106.7
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhc---cC--CceEEEEeCCchhHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR---NF--EKVIWVCVSDTFEEIRVA 257 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F--~~~~wv~vs~~~~~~~l~ 257 (533)
.+.||++|+++|...|...- ..+....+.|+|++|.|||++++.|.+...... .. -..+.|+.....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 37899999999998886543 235677889999999999999999997532111 11 135667777777888899
Q ss_pred HHHHHHhCCCCCCC-ccHHHHHHHHHHH--hCCceEEEEEeCCCCCCccccchhhhcccCC-CCCce--EEEEecchH--
Q 045152 258 KAIIEGLGVSASGL-SEFESLMKQIQEY--ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNG-HHESK--ILITTRDRS-- 329 (533)
Q Consensus 258 ~~il~~l~~~~~~~-~~~~~l~~~l~~~--l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~-~~gs~--IiiTtR~~~-- 329 (533)
..|++++.+..... .....+...+... -.+++++++||+++... .-+.+...+... ...++ ||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 99999996643222 2233333333332 24578999999997653 222333333211 12232 333343321
Q ss_pred ---HH----hhhCCCCeeeCCCCChHhhHHHHHHhhc
Q 045152 330 ---VA----LQLGSIDIIPVKELAEEECWSLLERLAF 359 (533)
Q Consensus 330 ---v~----~~~~~~~~~~l~~L~~~~~~~Lf~~~a~ 359 (533)
+. ..++ ...+.+++.+.++..+++.+++-
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 1111 24689999999999999988764
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.76 E-value=3.5e-08 Score=97.08 Aligned_cols=180 Identities=15% Similarity=0.050 Sum_probs=110.6
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeCCchhHHHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~il 261 (533)
+++|++..++.+..++... ....+.++|++|+|||++|+.+.+... ...+. ..+.++.+....
T Consensus 18 ~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~--------- 81 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG--------- 81 (319)
T ss_dssp GSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC---------
T ss_pred HHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC---------
Confidence 5899999999998887432 333489999999999999999886311 11111 223344332111
Q ss_pred HHhCCCCCCCccHHHHHHHHHHH--h-CCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchH-HHhh-hCC
Q 045152 262 EGLGVSASGLSEFESLMKQIQEY--I-TRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRS-VALQ-LGS 336 (533)
Q Consensus 262 ~~l~~~~~~~~~~~~l~~~l~~~--l-~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~-v~~~-~~~ 336 (533)
..........+... + .+++.++|+||++.......+.+...+.....++++|+||.... +... ...
T Consensus 82 ---------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 152 (319)
T 2chq_A 82 ---------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (319)
T ss_dssp ---------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT
T ss_pred ---------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh
Confidence 00111111111111 1 25678999999976654555667666665556778888876543 1111 123
Q ss_pred CCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 337 IDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 337 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
...+.+.+++.++..+++...+...+ .. --.+....++..++|.+..+...
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~-~~---i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 153 CAVFRFKPVPKEAMKKRLLEICEKEG-VK---ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTC-CC---BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 45799999999999999987763211 11 12345677889999999865543
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.75 E-value=6.4e-08 Score=97.51 Aligned_cols=195 Identities=17% Similarity=0.175 Sum_probs=113.3
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+++|++..++.+...+.... ....+.|+|++|+||||+|+.+.+.......+.. ..+....+ ...+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~~~----~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVCDN----CREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSSHH----HHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCcccHH----HHHHh
Confidence 358999999999999885432 2357889999999999999988763211111100 00000000 01111
Q ss_pred HHh-------CCC-CCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchH-HH
Q 045152 262 EGL-------GVS-ASGLSEFESLMKQIQEY-ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRS-VA 331 (533)
Q Consensus 262 ~~l-------~~~-~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~-v~ 331 (533)
... ... .........+...+... ..+++.++|+||++..+....+.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000 000 01112222222222111 135678999999977655556667776665555677777776432 11
Q ss_pred h-hhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHH
Q 045152 332 L-QLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIW 392 (533)
Q Consensus 332 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 392 (533)
. .......+++.+++.++..+++...+...+ .. --.+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~-~~---~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEH-IA---HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CC---BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 122346789999999999999987653111 11 113456788999999998876553
No 20
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.68 E-value=4.5e-08 Score=88.27 Aligned_cols=45 Identities=27% Similarity=0.288 Sum_probs=37.8
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..++||+++++.+.+.+... ....+.|+|++|+|||+||+.+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998542 3456789999999999999999874
No 21
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.64 E-value=5.7e-08 Score=95.90 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=107.2
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+++|++..+..+..++..... .......+.|+|++|+|||+||+.+.+. ... ..++++.+......
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~------- 78 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPG------- 78 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChH-------
Confidence 4689999999988888753211 0123457889999999999999999863 221 22344433222211
Q ss_pred HHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCC------------------CCCceEEE
Q 045152 262 EGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNG------------------HHESKILI 323 (533)
Q Consensus 262 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~------------------~~gs~Iii 323 (533)
.+...+...+ .+..+|+|||++.........+...+... ..+.++|.
T Consensus 79 --------------~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 79 --------------DLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp --------------HHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred --------------HHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 1111111111 24568899999765433334343333211 02345666
Q ss_pred EecchH-HHhhh-CC-CCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHHh
Q 045152 324 TTRDRS-VALQL-GS-IDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNLL 395 (533)
Q Consensus 324 TtR~~~-v~~~~-~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 395 (533)
||.... +...+ .. ...+.+.+++.++..+++...+.... . .--.+....+++.+.|.|..+..+...+
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-~---~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-V---RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-C---CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-C---CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 665432 11111 11 25789999999999999988764211 1 1124567889999999998877655443
No 22
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.57 E-value=1.5e-07 Score=88.34 Aligned_cols=172 Identities=14% Similarity=0.103 Sum_probs=98.7
Q ss_pred ceeech---hhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHH
Q 045152 183 EVCGRV---EEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 259 (533)
Q Consensus 183 ~~vGR~---~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 259 (533)
+++|.+ ...+.+..+... +....+.|+|++|+||||||+.+.+. .......+.|++++.....
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~------ 94 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI------ 94 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS------
T ss_pred hccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH------
Confidence 466633 445555555532 24568899999999999999999874 2223345567665432110
Q ss_pred HHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccc--cchhhhcccCC-CCCc-eEEEEecchH------
Q 045152 260 IIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKK--WNPFFSCLKNG-HHES-KILITTRDRS------ 329 (533)
Q Consensus 260 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~--~~~l~~~l~~~-~~gs-~IiiTtR~~~------ 329 (533)
+.+ .+ +.+ .++.+|||||++...... .+.+...+... ..+. ++|+||+...
T Consensus 95 ~~~-----------------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 95 STA-----------------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp CGG-----------------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred HHH-----------------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 000 00 011 345789999997653322 23333333211 1222 4777776321
Q ss_pred ---HHhhhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 330 ---VALQLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 330 ---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
+...+.....+.+++++.++..+++...+.... . .--.+....+++.++|.+..+..+
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~---~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-L---QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-C---CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHccCCHHHHHHH
Confidence 111222226799999999999999988763111 1 112456678899999998776543
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.56 E-value=5.3e-08 Score=107.88 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=79.1
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|++|+++++.--..+|..+..+++|+.|+++++.--..+| ..++.|++|++|+|+++.--..+|..+.++++|++
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip--~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP--DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC--hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 5678999999977666899999999999999999877444788 78999999999999996544589999999999999
Q ss_pred eeccCCch-----------------------hH----HhhccCCCCCCcccccCCccc
Q 045152 500 LGMEGSPL-----------------------LE----KRYEEGKGEDWRKISHIPHIM 530 (533)
Q Consensus 500 L~~~~c~~-----------------------l~----~~~~~~~~~~~~~~~~i~~~~ 530 (533)
|++++|+. |. ..|....+++|++|+|+|.++
T Consensus 709 L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp EECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred EECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 99988732 11 378888999999999999886
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.54 E-value=1.4e-07 Score=93.26 Aligned_cols=85 Identities=21% Similarity=0.324 Sum_probs=57.3
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|++|.+++| .+..+|..+..+++|++|++++|.....+| ..++.+++|++|+|++|..+..+|..+.++++|++
T Consensus 205 l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 205 LQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYP--PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp CTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCC--CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred CCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhH--HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 456667777663 345566666667777777777666666666 56666777777777777777777766777777777
Q ss_pred eeccCCch
Q 045152 500 LGMEGSPL 507 (533)
Q Consensus 500 L~~~~c~~ 507 (533)
|++++|+.
T Consensus 282 L~L~~n~~ 289 (328)
T 4fcg_A 282 LDLRGCVN 289 (328)
T ss_dssp EECTTCTT
T ss_pred EeCCCCCc
Confidence 77777664
No 25
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.52 E-value=3.1e-07 Score=91.68 Aligned_cols=194 Identities=12% Similarity=0.059 Sum_probs=111.0
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeCCchhHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEEIRVAKAI 260 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~i 260 (533)
.+++|+++.++.+..++.... ...+.|+|++|+||||+|+.+.+.......+. ....++.+.......+ .+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 468999999999999985432 23389999999999999999987421111121 2233333332222221 221
Q ss_pred HHHhCCC-CCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchH-HHhh-hCCC
Q 045152 261 IEGLGVS-ASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRS-VALQ-LGSI 337 (533)
Q Consensus 261 l~~l~~~-~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~-v~~~-~~~~ 337 (533)
+..+... ....... .....-.+++-++++|+++.........+...+.......++|++|.... +... ....
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 2111100 0000000 00011123557999999976554445556666654445567777775432 1111 1123
Q ss_pred CeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 338 DIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 338 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
..+.+.+++.++....+...+... .. .--.+....|++.++|.|..+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~-~~---~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQE-NV---KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTT-TC---CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHh-CC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 478999999999999998866311 11 112456788999999999875443
No 26
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.51 E-value=1.7e-06 Score=88.95 Aligned_cols=176 Identities=19% Similarity=0.190 Sum_probs=100.4
Q ss_pred CceeechhhH---HHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-hhHHHHH
Q 045152 182 GEVCGRVEEK---NELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEEIRVA 257 (533)
Q Consensus 182 ~~~vGR~~e~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~ 257 (533)
.+++|.+..+ ..+...+.. +....+.|+|++|+||||||+.+.+. .... ++.++.. ..... .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~------~~~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEA------GHLHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHH------TCCCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHc------CCCcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHH-H
Confidence 4588888777 666666643 34578999999999999999999873 2222 2222211 11111 1
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHH-HHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEE-EecchH--H-Hh
Q 045152 258 KAIIEGLGVSASGLSEFESLMKQIQ-EYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILI-TTRDRS--V-AL 332 (533)
Q Consensus 258 ~~il~~l~~~~~~~~~~~~l~~~l~-~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Iii-TtR~~~--v-~~ 332 (533)
+.++ .... ....+++.+|+||+++..+....+.|...+..+ ...+|. ||.+.. + ..
T Consensus 92 r~~~-----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 92 REAI-----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHH-----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHH
T ss_pred HHHH-----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHH
Confidence 1111 1111 112467889999999877655666676666542 233333 544432 1 11
Q ss_pred hhCCCCeeeCCCCChHhhHHHHHHhhccCCCc---cccccchHHHHHHHhHhCCCcchhHH
Q 045152 333 QLGSIDIIPVKELAEEECWSLLERLAFFRRSV---DDHEKLEPIGRKIAHKCKGLPLAAKV 390 (533)
Q Consensus 333 ~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~---~~~~~l~~~~~~I~~~c~GlPLai~~ 390 (533)
.......+.+++++.++...++.+.+...... ....--.+....+++.++|.+..+..
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 22334578899999999999998876421000 11112245567788888888766543
No 27
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.42 E-value=1.1e-06 Score=90.42 Aligned_cols=182 Identities=16% Similarity=0.126 Sum_probs=105.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCC--ceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhC
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE--KVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIT 286 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 286 (533)
...+.|+|++|+||||||+.+++. ....|. .+++++. ..+..++...+... . ...+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----K----LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHHHHHHTT-----C----HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHcc-----c----HHHHHHHhc
Confidence 668999999999999999999973 333332 2344432 23334444443221 1 112333344
Q ss_pred CceEEEEEeCCCCCCc--cccchhhhcccC-CCCCceEEEEecch---------HHHhhhCCCCeeeCCCCChHhhHHHH
Q 045152 287 RKKFFLVLDDVWDGDY--KKWNPFFSCLKN-GHHESKILITTRDR---------SVALQLGSIDIIPVKELAEEECWSLL 354 (533)
Q Consensus 287 ~kr~LlVLDdv~~~~~--~~~~~l~~~l~~-~~~gs~IiiTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf 354 (533)
.+.-+|+|||++.... ..-+.+...+.. ...|..||+||.+. .+...+.....+.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3667999999965432 122234333321 23467788888752 22222333357899999999999999
Q ss_pred HHhhccCCCccccccchHHHHHHHhHhCCCcchhHHHHHH------hhcc-cchHHHHHHHhhh
Q 045152 355 ERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVIWNL------LRSK-STVKEWQRILDSE 411 (533)
Q Consensus 355 ~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~------L~~~-~~~~~w~~~l~~~ 411 (533)
.+.+.... ...+ .+....|+..+.|.+..+..+-.. +..+ -+.+.+..++...
T Consensus 273 ~~~~~~~~-~~i~---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 273 RKMLEIEH-GELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHT-CCCC---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTT
T ss_pred HHHHHHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 88763111 1111 345678889999988765432211 1122 2566777776643
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.39 E-value=3.5e-07 Score=90.50 Aligned_cols=83 Identities=24% Similarity=0.365 Sum_probs=78.7
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|++|++++|.....+|..+..+++|++|++++|..+..+| ..++.+++|++|+|++|+.+..+|+.+.+|++|+.
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP--LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC--TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc--hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 6789999999999999999999999999999999999999999 68999999999999999999999999999999999
Q ss_pred eeccC
Q 045152 500 LGMEG 504 (533)
Q Consensus 500 L~~~~ 504 (533)
+++..
T Consensus 306 l~l~~ 310 (328)
T 4fcg_A 306 ILVPP 310 (328)
T ss_dssp EECCG
T ss_pred EeCCH
Confidence 99863
No 29
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.38 E-value=3e-06 Score=81.80 Aligned_cols=184 Identities=16% Similarity=0.086 Sum_probs=99.5
Q ss_pred CceeechhhHHHHHHHHhCCCcc-------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSE-------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (533)
.+++|.++.++.+.+.+...... +-.....+.|+|++|+|||+||+.+.+. .... .+.+..+.-.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~--- 88 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELV--- 88 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGC---
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHH---
Confidence 46899999999998877432000 0123456899999999999999999863 2211 2222221110
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCC-----------Cccccchhhhcc---c--CCCCC
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDG-----------DYKKWNPFFSCL---K--NGHHE 318 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~-----------~~~~~~~l~~~l---~--~~~~g 318 (533)
... ...........+......++.+|+|||++.. +......+...+ . ....+
T Consensus 89 -----------~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 89 -----------KKF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp -----------CCS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred -----------Hhc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 000 0011112222223333456689999999542 101111122222 1 12335
Q ss_pred ceEEEEecchHHHh--hh---CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCC-cchhHH
Q 045152 319 SKILITTRDRSVAL--QL---GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGL-PLAAKV 390 (533)
Q Consensus 319 s~IiiTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~ 390 (533)
..||.||....... .. .....+.++..+.++..++|...+... ....... ...++..+.|. |-.+..
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM-NLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC-CCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 66777887543221 11 123478999999999999998876421 1111112 36677777774 434443
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.38 E-value=1.5e-06 Score=86.15 Aligned_cols=177 Identities=15% Similarity=0.121 Sum_probs=103.9
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+++|++..++.+..++..... .......+.|+|++|+|||+||+.+.+. .... .+.++.+....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~--------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEK--------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCS---------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccc---------
Confidence 4689999999999988864321 1234556899999999999999999763 2222 22333221111
Q ss_pred HHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCC------------------CCceEEE
Q 045152 262 EGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGH------------------HESKILI 323 (533)
Q Consensus 262 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~------------------~gs~Iii 323 (533)
.......+.. ..+..+|+||+++.........+...+.... ++..+|.
T Consensus 94 ------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 94 ------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp ------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred ------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 1111111111 2355788999997654433444444333221 1245666
Q ss_pred EecchHH-Hhh-hCC-CCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHHH
Q 045152 324 TTRDRSV-ALQ-LGS-IDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 324 TtR~~~v-~~~-~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 391 (533)
+|..... ... ... ...+.+.+++.++...++.+.+.... ..--.+....+++.+.|.|..+..+
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~----~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN----KTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT----CEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 6654321 111 112 36799999999999999987763211 1112455677888999999655543
No 31
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.37 E-value=4.5e-06 Score=83.73 Aligned_cols=197 Identities=14% Similarity=0.076 Sum_probs=104.4
Q ss_pred CceeechhhHHH---HHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEe----CCchhHH
Q 045152 182 GEVCGRVEEKNE---LLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV----SDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v----s~~~~~~ 254 (533)
.+++|++..++. +.+.+.... .....+.|+|++|+|||+||+.+.+. ..... ..+.+.. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~-~~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDT-PFTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSC-CEEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccC-Ccccccchhhhhcccchh
Confidence 469999988766 444443322 23468999999999999999999874 22111 1112221 1122333
Q ss_pred HHHHHHHHHhCC---------------------CCC-------C--CccHHHHHHHHHHHh-----CCc----eEEEEEe
Q 045152 255 RVAKAIIEGLGV---------------------SAS-------G--LSEFESLMKQIQEYI-----TRK----KFFLVLD 295 (533)
Q Consensus 255 ~l~~~il~~l~~---------------------~~~-------~--~~~~~~l~~~l~~~l-----~~k----r~LlVLD 295 (533)
..+.+.+..... ... . ......+...+.... .++ +.+|+||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 334333332110 000 0 000122222222211 123 3599999
Q ss_pred CCCCCCccccchhhhcccCCCCCceEEEEecc-------------hHHH-hhhCCCCeeeCCCCChHhhHHHHHHhhccC
Q 045152 296 DVWDGDYKKWNPFFSCLKNGHHESKILITTRD-------------RSVA-LQLGSIDIIPVKELAEEECWSLLERLAFFR 361 (533)
Q Consensus 296 dv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~-------------~~v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~ 361 (533)
+++.........+...+...... .++++|.. ..+. ........+.+++++.++..+++...+...
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 99776555555555555443333 34444431 1111 111223458999999999999999876421
Q ss_pred CCccccccchHHHHHHHhHhC-CCcchhHH
Q 045152 362 RSVDDHEKLEPIGRKIAHKCK-GLPLAAKV 390 (533)
Q Consensus 362 ~~~~~~~~l~~~~~~I~~~c~-GlPLai~~ 390 (533)
. . .--.+....|++.+. |.|..+..
T Consensus 276 ~-~---~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 276 D-V---EMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp T-C---CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred C-C---CCCHHHHHHHHHHhcCCCHHHHHH
Confidence 1 1 122456678888887 88876544
No 32
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=1.3e-06 Score=91.99 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=107.5
Q ss_pred CceeechhhHHHHHHHHhCCCc-----------cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc
Q 045152 182 GEVCGRVEEKNELLSKLLCESS-----------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 250 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 250 (533)
.+++|++..++.+.+++..... .+.+..+.+.|+|++|+||||+|+.+.+.. .+ ..+.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 4689999999999999965210 001235789999999999999999998742 22 2334444443
Q ss_pred hhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccc---cchhhhcccCCCCCceEEEEecc
Q 045152 251 FEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKK---WNPFFSCLKNGHHESKILITTRD 327 (533)
Q Consensus 251 ~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~---~~~l~~~l~~~~~gs~IiiTtR~ 327 (533)
.... +....+........-..-...... .....+++.+|+||+++...... +..+...+... +..||+++..
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 3322 222222222111000000000000 00123577899999996643221 23344433322 3446665554
Q ss_pred hH---HHhhhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc-hhHHH
Q 045152 328 RS---VALQLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL-AAKVI 391 (533)
Q Consensus 328 ~~---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 391 (533)
.. +.........+.+++++.++..+++...+....-. . -.+....|++.++|.+. ++..+
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~-i---~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK-L---DPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-C---CTTHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHcCCcHHHHHHHH
Confidence 22 22222224578999999999999988766421111 1 13446788899999554 44444
No 33
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.36 E-value=5.9e-06 Score=78.56 Aligned_cols=186 Identities=13% Similarity=0.067 Sum_probs=96.7
Q ss_pred CceeechhhHHHHHHHHhC---CCc---cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLLC---ESS---EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~---~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
.+++|.+..++.+.+++.. ... -+......+.|+|++|+|||++|+.+.+. .... .+.++.+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~--- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVE--- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHh---
Confidence 4688998887777665421 110 00123456889999999999999999873 2222 23344332110
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC------------ccccc---hhhhcccC--CCCC
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGD------------YKKWN---PFFSCLKN--GHHE 318 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~------------~~~~~---~l~~~l~~--~~~g 318 (533)
.........+...+.......+.+|+|||++... ..... .+...+.. ...+
T Consensus 78 ------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 78 ------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp ------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred ------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 0000111222223333334457899999996531 11111 22222221 1234
Q ss_pred ceEEEEecchHHH-hh-hC---CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc-hhHH
Q 045152 319 SKILITTRDRSVA-LQ-LG---SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL-AAKV 390 (533)
Q Consensus 319 s~IiiTtR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~ 390 (533)
..||.||...... .. .. ....+.++..+.++-.+++...+.... . ..........+++.+.|.+- .+..
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-~--~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK-L--TQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT-C--CBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC-C--CcchhhHHHHHHHHCCCCCHHHHHH
Confidence 5666677654321 11 11 235678999999999999988763211 1 11111234678888888765 4433
No 34
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.35 E-value=1.3e-06 Score=77.89 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=73.4
Q ss_pred cccccccccceEEEeecCCcccC-CccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CC
Q 045152 415 ENISIMPCLSVLRVYLCPKLKVL-PDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LL 492 (533)
Q Consensus 415 ~~~~ilp~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~ 492 (533)
++..+.+.|++|.++++ .+..+ |..+..+++|++|+|++. .|..+|. ..+..+++|++|+|++ .+|+.+|++ +.
T Consensus 27 iP~~~~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~-N~l~~l~~~~~~ 102 (174)
T 2r9u_A 27 VPAGIPTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPT-GVFDKLTQLTQLDLND-NHLKSIPRGAFD 102 (174)
T ss_dssp CCSCCCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCS-SCCCCCCTTTTT
T ss_pred cCCCcCCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccCh-hHhCCcchhhEEECCC-CccceeCHHHhc
Confidence 34445678999999984 45666 667889999999999976 5899983 2357899999999999 689999986 88
Q ss_pred CCCCcceeeccCCch
Q 045152 493 QITTLKELGMEGSPL 507 (533)
Q Consensus 493 ~l~~L~~L~~~~c~~ 507 (533)
++++|++|++++++.
T Consensus 103 ~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 103 NLKSLTHIYLYNNPW 117 (174)
T ss_dssp TCTTCSEEECCSSCB
T ss_pred cccCCCEEEeCCCCc
Confidence 999999999998873
No 35
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=1.3e-06 Score=87.25 Aligned_cols=195 Identities=13% Similarity=0.091 Sum_probs=104.3
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcch---hhhc-cCC-----------------
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNND---EVKR-NFE----------------- 240 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~-~F~----------------- 240 (533)
.+++|.+...+.+..++... +....+.|+|+.|+||||+|+.+.... .... .++
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~-----~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP-----RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT-----TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhC-----CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 35899998888888777222 122228999999999999998876521 0000 000
Q ss_pred ---ceEEEEeCCch-hHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCC
Q 045152 241 ---KVIWVCVSDTF-EEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGH 316 (533)
Q Consensus 241 ---~~~wv~vs~~~-~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~ 316 (533)
..+.+..+... ......++++..+.....- .... .+. .+.+++-++|||++...+......+...+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 01111111100 0000122222222111000 0000 000 023366799999997755445555666665444
Q ss_pred CCceEEEEecchH-HHh-hhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccc-hHHHHHHHhHhCCCcchhHHH
Q 045152 317 HESKILITTRDRS-VAL-QLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKL-EPIGRKIAHKCKGLPLAAKVI 391 (533)
Q Consensus 317 ~gs~IiiTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l-~~~~~~I~~~c~GlPLai~~~ 391 (533)
.+..+|++|.... +.. .......+++++++.++..+.+...+...+ .. -- .+....|++.++|.+..+..+
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER-IQ---LETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CE---ECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC-CC---CCcHHHHHHHHHHcCCCHHHHHHH
Confidence 5677888776532 211 122346799999999999999987763111 11 11 345678899999998766544
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.33 E-value=6.8e-06 Score=78.75 Aligned_cols=172 Identities=21% Similarity=0.195 Sum_probs=92.0
Q ss_pred CceeechhhHHHHHHH-------HhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHH
Q 045152 182 GEVCGRVEEKNELLSK-------LLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~-------L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (533)
..++|.....+++... +... .......+.|+|++|+|||+||+.+.+. .. +. .+.++.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~-~~~i~~~~~---- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FP-FIKICSPDK---- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CS-EEEEECGGG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CC-EEEEeCHHH----
Confidence 3567777776666652 2211 1245778999999999999999999873 21 22 122222211
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCC------Ccc----ccchhhhcccC---CCCCceE
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDG------DYK----KWNPFFSCLKN---GHHESKI 321 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~------~~~----~~~~l~~~l~~---~~~gs~I 321 (533)
+.+. ........+...+......+..+|+|||++.. ... ....+...+.. ......|
T Consensus 101 ---------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 1000 00001122233333344567889999998542 101 11222222221 2233456
Q ss_pred EEEecchHHHhh---hCC-CCeeeCCCCCh-HhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCC
Q 045152 322 LITTRDRSVALQ---LGS-IDIIPVKELAE-EECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGL 384 (533)
Q Consensus 322 iiTtR~~~v~~~---~~~-~~~~~l~~L~~-~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl 384 (533)
|.||........ ... ...+.+++++. ++...++.+... . -.+....|++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~----~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----F----KDKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----S----CHHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----C----CHHHHHHHHHHhcCC
Confidence 777777654433 122 45688999988 666666655321 1 134467788888884
No 37
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.33 E-value=3.2e-06 Score=83.30 Aligned_cols=178 Identities=14% Similarity=0.104 Sum_probs=103.2
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+++|.+..++.+..++... ....++.+.|++|+|||++|+.+.+. .. ...+.++.+.. ... ..+.++
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~~~-~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-KID-FVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-CHH-HHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-CHH-HHHHHH
Confidence 46899999999999999643 23467888899999999999999863 21 22344443331 111 111111
Q ss_pred HHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC-ccccchhhhcccCCCCCceEEEEecchHH-Hhh-hCCCC
Q 045152 262 EGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGD-YKKWNPFFSCLKNGHHESKILITTRDRSV-ALQ-LGSID 338 (533)
Q Consensus 262 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~-~~~~~~l~~~l~~~~~gs~IiiTtR~~~v-~~~-~~~~~ 338 (533)
...... ....+++.+++|||++... ....+.+...+.....+.++|+||....- ... .....
T Consensus 94 ~~~~~~---------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 94 TNFASA---------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHHB---------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHHhh---------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 111000 0012367899999997654 34445555555443456778888876431 111 11135
Q ss_pred eeeCCCCChHhhHHHHH-------HhhccCCCccccccch-HHHHHHHhHhCCCcchhHH
Q 045152 339 IIPVKELAEEECWSLLE-------RLAFFRRSVDDHEKLE-PIGRKIAHKCKGLPLAAKV 390 (533)
Q Consensus 339 ~~~l~~L~~~~~~~Lf~-------~~a~~~~~~~~~~~l~-~~~~~I~~~c~GlPLai~~ 390 (533)
.+++++++.++-.+++. ..+. ..... --. +....|++.++|.+..+..
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~-~~~~~---~~~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICK-HEGIA---IADMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHH-HHTCC---BSCHHHHHHHHHHTCSCTTHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHH-HcCCC---CCcHHHHHHHHHhCCCCHHHHHH
Confidence 78999999888443322 2221 00111 113 6678888999988775443
No 38
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.31 E-value=1.9e-06 Score=76.45 Aligned_cols=89 Identities=21% Similarity=0.289 Sum_probs=73.2
Q ss_pred cccccccccceEEEeecCCcccC-CccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CC
Q 045152 415 ENISIMPCLSVLRVYLCPKLKVL-PDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LL 492 (533)
Q Consensus 415 ~~~~ilp~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~ 492 (533)
++..+.+.+++|.+++ ..+..+ |..+..+++|++|++++.. +..+|. ..+..+++|++|+|++ .+|+.+|++ +.
T Consensus 24 ip~~~~~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~-~~f~~l~~L~~L~L~~-N~l~~~~~~~~~ 99 (170)
T 3g39_A 24 VPTGIPTTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPA-GVFDKLTQLTQLSLND-NQLKSIPRGAFD 99 (170)
T ss_dssp CCSCCCTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCS-SCCCCCCTTTTT
T ss_pred cCccCCCCCcEEEcCC-CcCCccChhhhcCcccCCEEECCCCC-cCccCh-hhccCCCCCCEEECCC-CccCEeCHHHhc
Confidence 3445567899999998 456666 6668899999999999764 888883 3457899999999999 689999975 88
Q ss_pred CCCCcceeeccCCch
Q 045152 493 QITTLKELGMEGSPL 507 (533)
Q Consensus 493 ~l~~L~~L~~~~c~~ 507 (533)
++++|++|+++++|.
T Consensus 100 ~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 100 NLKSLTHIWLLNNPW 114 (170)
T ss_dssp TCTTCCEEECCSSCB
T ss_pred CCCCCCEEEeCCCCC
Confidence 999999999998863
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.30 E-value=4e-06 Score=81.89 Aligned_cols=161 Identities=13% Similarity=0.064 Sum_probs=89.1
Q ss_pred ceeechhhHHHHHHHHhCCC---------ccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhH
Q 045152 183 EVCGRVEEKNELLSKLLCES---------SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE 253 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 253 (533)
+++|.+..++.+.+.+.... -........+.|+|++|+|||+||+.+.+...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 46888888887776653210 001234567899999999999999988764222122212223333311
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCC---------CccccchhhhcccCCCCCceEEEE
Q 045152 254 IRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDG---------DYKKWNPFFSCLKNGHHESKILIT 324 (533)
Q Consensus 254 ~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~---------~~~~~~~l~~~l~~~~~gs~IiiT 324 (533)
.+..... ..........+... +..+|+||+++.. .......+...+.....+..+|.|
T Consensus 109 ---------~l~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1111100 01111222222222 3359999999643 222334455555555556778888
Q ss_pred ecchHHHhhh--------CCCCeeeCCCCChHhhHHHHHHhhc
Q 045152 325 TRDRSVALQL--------GSIDIIPVKELAEEECWSLLERLAF 359 (533)
Q Consensus 325 tR~~~v~~~~--------~~~~~~~l~~L~~~~~~~Lf~~~a~ 359 (533)
|......... .....+.+++++.++...++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 7654321110 1136789999999999999988764
No 40
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.30 E-value=1e-05 Score=80.04 Aligned_cols=170 Identities=12% Similarity=0.050 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhh--------------------ccCCceEEEEe
Q 045152 188 VEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK--------------------RNFEKVIWVCV 247 (533)
Q Consensus 188 ~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~wv~v 247 (533)
++..+.+...+..+ .-...+.++|+.|+|||++|+.+.+...-. .|++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 34456666666432 234578999999999999998887531100 0112 222221
Q ss_pred CCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEE
Q 045152 248 SDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEY----ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILI 323 (533)
Q Consensus 248 s~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Iii 323 (533)
.. .......+.+...+... ..+++-++|+|+++..+....+.+...+.....++.+|+
T Consensus 82 ~~------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp CT------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred cc------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 10 00111222222222111 124677899999977665556667777766556677777
Q ss_pred EecchH-HHh-hhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHH
Q 045152 324 TTRDRS-VAL-QLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKV 390 (533)
Q Consensus 324 TtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 390 (533)
+|.+.. +.. .......+++++++.++..+.+..... . -.+....+++.++|.|..+..
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~----~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----M----SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----C----CHHHHHHHHHHTTTCHHHHHH
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----C----CHHHHHHHHHHcCCCHHHHHH
Confidence 776542 222 223356799999999999999887641 1 133457789999999977654
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.29 E-value=9.2e-07 Score=79.18 Aligned_cols=45 Identities=24% Similarity=0.208 Sum_probs=37.6
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.+++||+.+++.+.+.+... ....+.|+|++|+|||+||+.+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998542 3456789999999999999999864
No 42
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.24 E-value=9e-07 Score=97.08 Aligned_cols=83 Identities=23% Similarity=0.244 Sum_probs=74.8
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|++|.++++ .+..+|..+..+.+|++|+|+++. |..+| ..++.|++|++|+|++| .|..+|.++.+|++|++
T Consensus 246 l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp--~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 246 YDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLP--AELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQF 320 (727)
T ss_dssp CCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCC--SSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCC
T ss_pred CCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccC--hhhcCCCCCCEEECCCC-CCCccChhhhcCCCccE
Confidence 678999999985 566999999999999999999776 88999 78999999999999996 88999999999999999
Q ss_pred eeccCCch
Q 045152 500 LGMEGSPL 507 (533)
Q Consensus 500 L~~~~c~~ 507 (533)
|++++|+.
T Consensus 321 L~L~~N~l 328 (727)
T 4b8c_D 321 LGVEGNPL 328 (727)
T ss_dssp EECTTSCC
T ss_pred EeCCCCcc
Confidence 99999973
No 43
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.22 E-value=1.3e-06 Score=77.14 Aligned_cols=81 Identities=23% Similarity=0.228 Sum_probs=47.5
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCC-CCCccCCCCCCCcceEEeccCCCCCCCC--cCCCCCCC
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEE-LPILEDHIFLPRLSSLRIEYCPKLKLLP--DSLLQITT 496 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~-lp~~~~~~~l~~L~~L~l~~C~~l~~lP--~~~~~l~~ 496 (533)
++.|++|.+++|. +..+ ..+..+++|++|+++++. +.. +| ..+..+++|++|++++| .+..+| ..+.++++
T Consensus 48 l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~ 121 (168)
T 2ell_A 48 FVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENR-IFGGLD--MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLEC 121 (168)
T ss_dssp GGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCC-CCSCCC--HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSC
T ss_pred CCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCc-CchHHH--HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCC
Confidence 4556666666644 4444 455556666666666554 444 44 33344666666666664 566665 45666666
Q ss_pred cceeeccCCc
Q 045152 497 LKELGMEGSP 506 (533)
Q Consensus 497 L~~L~~~~c~ 506 (533)
|++|++++|+
T Consensus 122 L~~L~l~~N~ 131 (168)
T 2ell_A 122 LKSLDLFNCE 131 (168)
T ss_dssp CCEEECCSSG
T ss_pred CCEEEeeCCc
Confidence 6666666665
No 44
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.21 E-value=1.3e-06 Score=79.48 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=60.1
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCC-CCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEE-LPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~-lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~ 498 (533)
++.|++|.+++|.--...|..+..+++|++|+++++. +.. .| ..++.+++|++|++++|..+..+| .+.++++|+
T Consensus 87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~--~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA-HDDSIL--TKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK 162 (197)
T ss_dssp CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB-CBGGGH--HHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc-cCcHhH--HHHhhCCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence 5677777777755444466677777888888887765 433 44 466778888888888876677777 577788888
Q ss_pred eeeccCCch
Q 045152 499 ELGMEGSPL 507 (533)
Q Consensus 499 ~L~~~~c~~ 507 (533)
+|++++|+.
T Consensus 163 ~L~l~~n~i 171 (197)
T 4ezg_A 163 SLNIQFDGV 171 (197)
T ss_dssp EEECTTBCC
T ss_pred EEECCCCCC
Confidence 888877763
No 45
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.20 E-value=3.9e-06 Score=76.03 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=50.9
Q ss_pred ccccceEEEeecCCcccCC-ccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLP-DYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L 497 (533)
++.|++|+++++ .+..++ ..+..+++|++|++++.. +..+|. ..+..+++|++|+|++ ..|..+|++ +.++++|
T Consensus 53 l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~-~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L 128 (193)
T 2wfh_A 53 YKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR-LRCIPP-RTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSAL 128 (193)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCT-TTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTC
T ss_pred ccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc-cCEeCH-HHhCCCCCCCEEECCC-CCCCeeChhhhhcCccc
Confidence 445666666653 334443 345566666666666543 555552 3466677777777777 467777753 6667777
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|+++++|
T Consensus 129 ~~L~L~~N~ 137 (193)
T 2wfh_A 129 SHLAIGANP 137 (193)
T ss_dssp CEEECCSSC
T ss_pred cEEEeCCCC
Confidence 777777665
No 46
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.17 E-value=1.4e-06 Score=76.82 Aligned_cols=87 Identities=20% Similarity=0.146 Sum_probs=73.7
Q ss_pred cccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCc----CCCCC
Q 045152 419 IMPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPD----SLLQI 494 (533)
Q Consensus 419 ilp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~----~~~~l 494 (533)
-++.|++|.+++|.--..+|..+..+++|++|+++++. +..+|.+..++.+++|++|++++| .+..+|+ .+..+
T Consensus 69 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l 146 (168)
T 2ell_A 69 KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLL 146 (168)
T ss_dssp CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTC
T ss_pred cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhC
Confidence 37889999999966544477777779999999999875 888875457889999999999996 7888887 78899
Q ss_pred CCcceeeccCCch
Q 045152 495 TTLKELGMEGSPL 507 (533)
Q Consensus 495 ~~L~~L~~~~c~~ 507 (533)
++|++|++++|+.
T Consensus 147 ~~L~~L~l~~n~~ 159 (168)
T 2ell_A 147 PQLTYLDGYDRED 159 (168)
T ss_dssp SSCCEETTEETTS
T ss_pred ccCcEecCCCCCh
Confidence 9999999999875
No 47
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.16 E-value=2.1e-06 Score=73.90 Aligned_cols=114 Identities=17% Similarity=0.045 Sum_probs=67.5
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 262 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 262 (533)
+++|+...+.++.+.+.... .....|.|+|++|+|||++|+.+++... ..... .+ ++.+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----ETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----TCCSCEEEESSTTSSHHHHHHHHHHSST-TTTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCC-EE-EECCCCCcc---------
Confidence 57899999999988875432 1234578999999999999999987421 11112 23 554432211
Q ss_pred HhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecc
Q 045152 263 GLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRD 327 (533)
Q Consensus 263 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~ 327 (533)
... ...+... ..-.|+||+++.........+...+.......++|.||..
T Consensus 66 ---------~~~---~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQL---NDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCH---HHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhh---hcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 011 1111111 2246899999776554455566665444455678877764
No 48
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.13 E-value=8e-06 Score=76.09 Aligned_cols=82 Identities=26% Similarity=0.375 Sum_probs=45.0
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCc-CCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPD-SLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~-~~~~l~~L 497 (533)
++.|++|.++++ .+..+|.. +..+.+|++|+++++. +..+| ..+..+++|++|+|++ .+|..+|+ .+..+++|
T Consensus 87 l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp--~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 87 LTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNK-LTELP--RGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSL 161 (229)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCSCC--TTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred CCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCCc-ccccC--cccccCCCCCEEECCC-CcCCccCHHHHhCCCCC
Confidence 445556666553 44444433 3455666666665433 55555 4555566666666665 35555553 35556666
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|+++++|
T Consensus 162 ~~L~l~~N~ 170 (229)
T 3e6j_A 162 THAYLFGNP 170 (229)
T ss_dssp CEEECTTSC
T ss_pred CEEEeeCCC
Confidence 666666555
No 49
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=9.9e-06 Score=80.36 Aligned_cols=174 Identities=13% Similarity=0.110 Sum_probs=100.8
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeCCchhHHHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~il 261 (533)
+++|.+..++.+...+..+ +...+.++|++|+||||+|+.+..... ...+. ...-++.+.....
T Consensus 26 ~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~-------- 90 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGI-------- 90 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSH--------
T ss_pred HhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccH--------
Confidence 4788888888888877532 333389999999999999999886311 11111 1222222221111
Q ss_pred HHhCCCCCCCccHHHHHHHHHHH------hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchH-HHh-h
Q 045152 262 EGLGVSASGLSEFESLMKQIQEY------ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRS-VAL-Q 333 (533)
Q Consensus 262 ~~l~~~~~~~~~~~~l~~~l~~~------l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~-v~~-~ 333 (533)
+.+...+... ..+.+-++|+|+++.......+.+...+......+++|++|.... +.. .
T Consensus 91 -------------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i 157 (340)
T 1sxj_C 91 -------------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPAL 157 (340)
T ss_dssp -------------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred -------------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhH
Confidence 1111111111 123467899999976554445556655554445567777765432 111 1
Q ss_pred hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchh
Q 045152 334 LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAA 388 (533)
Q Consensus 334 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 388 (533)
......+.+.+++.++..+.+...+-.. ... --.+....|++.++|.+.-+
T Consensus 158 ~sR~~~~~~~~l~~~~~~~~l~~~~~~~-~~~---i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 158 LSQCTRFRFQPLPQEAIERRIANVLVHE-KLK---LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHTT-TCC---BCHHHHHHHHHHHTTCHHHH
T ss_pred HhhceeEeccCCCHHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHcCCCHHHH
Confidence 1224578899999999888887765211 111 11345677888888887643
No 50
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.12 E-value=2.4e-05 Score=77.03 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=86.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITR 287 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 287 (533)
....+.|+|++|+||||||+.+.+.. ...-...++++. ..+...+...+... .... +.....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~--~~~~~~~~~i~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~- 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA--KKRGYRVIYSSA------DDFAQAMVEHLKKG-----TINE----FRNMYK- 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH--HHTTCCEEEEEH------HHHHHHHHHHHHHT-----CHHH----HHHHHH-
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEH------HHHHHHHHHHHHcC-----cHHH----HHHHhc-
Confidence 45678999999999999999998742 211123345542 22333333332210 1111 122222
Q ss_pred ceEEEEEeCCCCCCc--cccchhhhcccC-CCCCceEEEEecch---------HHHhhhCCCCeeeCCCCChHhhHHHHH
Q 045152 288 KKFFLVLDDVWDGDY--KKWNPFFSCLKN-GHHESKILITTRDR---------SVALQLGSIDIIPVKELAEEECWSLLE 355 (533)
Q Consensus 288 kr~LlVLDdv~~~~~--~~~~~l~~~l~~-~~~gs~IiiTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 355 (533)
+..+|+|||+..... .....+...+.. ...|..||+||... .+...+.....+.+++ +.++..+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 356899999965432 112233333321 12356788877642 1222222235689999 9999999998
Q ss_pred HhhccCCCccccccchHHHHHHHhHhCCCcch
Q 045152 356 RLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLA 387 (533)
Q Consensus 356 ~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 387 (533)
..+.... .. --.+....|++.+ |..-.
T Consensus 177 ~~~~~~~-~~---l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 177 EKLKEFN-LE---LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHTT-CC---CCHHHHHHHHHHC-SSHHH
T ss_pred HHHHhcC-CC---CCHHHHHHHHHhC-CCHHH
Confidence 8764211 11 1144567778888 77654
No 51
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.12 E-value=1.7e-05 Score=77.96 Aligned_cols=183 Identities=16% Similarity=0.050 Sum_probs=99.3
Q ss_pred CceeechhhHHHHHHHHhCCC------ccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCES------SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
.+++|.+..++.|.+.+.... .......+.+.|+|++|+|||+||+.+.+. .... .+.++. .+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~------~~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSS------SD 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEH------HH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEch------HH
Confidence 468999999999988772110 001123567899999999999999999873 2222 122221 11
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHH-HHHhCCceEEEEEeCCCCCCcc-------c----cchhhhccc---CCCCCce
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQI-QEYITRKKFFLVLDDVWDGDYK-------K----WNPFFSCLK---NGHHESK 320 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l-~~~l~~kr~LlVLDdv~~~~~~-------~----~~~l~~~l~---~~~~gs~ 320 (533)
+ .... ..........+ ...-..++.+|+||+++..... . ...+...+. ....+..
T Consensus 87 l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 87 L----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp H----HTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred H----hhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 1 1110 01112222222 2222446789999999643110 0 122222222 2234555
Q ss_pred EEEEecchHHHh-hh--CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCC-cchhH
Q 045152 321 ILITTRDRSVAL-QL--GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGL-PLAAK 389 (533)
Q Consensus 321 IiiTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~ 389 (533)
||.||..+.... .+ .....+.+...+.++-.++|...+..... . .-......|++.+.|. +-.|.
T Consensus 157 vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~---~~~~~l~~la~~t~g~sg~di~ 225 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC-V---LTKEDYRTLGAMTEGYSGSDIA 225 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC-C---CCHHHHHHHHHTTTTCCHHHHH
T ss_pred EEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC-C---CCHHHHHHHHHHcCCCCHHHHH
Confidence 666776542211 11 22456788899999999999987642111 1 1123457788888874 33344
No 52
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.10 E-value=4.3e-06 Score=74.74 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCC
Q 045152 188 VEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVS 267 (533)
Q Consensus 188 ~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~ 267 (533)
....+.+.++..... ......+.|+|++|+||||||+.+++.......+ .+++++ ..++...+.......
T Consensus 20 ~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~ 89 (180)
T 3ec2_A 20 NRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEG 89 (180)
T ss_dssp HHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCc
Confidence 344455555553332 1345789999999999999999998743212222 233443 344444444333221
Q ss_pred CCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccc--hhhhcccCC-CCCceEEEEecc
Q 045152 268 ASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWN--PFFSCLKNG-HHESKILITTRD 327 (533)
Q Consensus 268 ~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~--~l~~~l~~~-~~gs~IiiTtR~ 327 (533)
... .....+. +.-+|||||++....+.|. .+...+... ..|..+|+||..
T Consensus 90 ~~~-----~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 90 KDT-----KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CCS-----HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred hHH-----HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 111 1122221 4568999999743333343 233333221 246778888874
No 53
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.09 E-value=3.9e-06 Score=89.24 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=52.9
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCC--CcCCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLL--PDSLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~l--P~~~~~l~~L 497 (533)
++.|+.|.++++ .+..+|..+..+++|++|+++++. +..+| .++.|++|++|+|++ .+|..+ |+.+.++++|
T Consensus 462 l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp---~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 462 LLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LENVD---GVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp GTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCG---GGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTC
T ss_pred cccCcEeecCcc-cccccchhhhcCCCCCEEECCCCC-CCCCc---ccCCCCCCcEEECCC-CCCCCCCCcHHHhcCCCC
Confidence 345666666663 445666666667777777776543 55555 566677777777776 366666 6677777777
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++|+
T Consensus 536 ~~L~L~~N~ 544 (567)
T 1dce_A 536 VLLNLQGNS 544 (567)
T ss_dssp CEEECTTSG
T ss_pred CEEEecCCc
Confidence 777777665
No 54
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.09 E-value=2.2e-05 Score=78.33 Aligned_cols=186 Identities=14% Similarity=-0.009 Sum_probs=98.2
Q ss_pred CceeechhhHHHHHHHHhCC----C--ccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCE----S--SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
.+++|.+..++.|.+.+... . .......+.|.|+|++|+|||+||+.+.+. .... .+.++. .+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~------~~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSS------SD 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEH------HH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeH------HH
Confidence 46899999999988876311 0 001123456889999999999999999874 2222 122221 11
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCcc-----------ccchhhhccc---CCCCCceE
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYK-----------KWNPFFSCLK---NGHHESKI 321 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~I 321 (533)
+. ....+ .....+...+......++.+|+||+++..... ....+...+. ....+..|
T Consensus 120 l~----~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 LV----SKWMG-----ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HH----SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred Hh----hhhcc-----hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 11 11100 11111222222222457789999999653211 0122222222 12334556
Q ss_pred EEEecchHHH-hh--hCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCC-cchhHHH
Q 045152 322 LITTRDRSVA-LQ--LGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGL-PLAAKVI 391 (533)
Q Consensus 322 iiTtR~~~v~-~~--~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 391 (533)
|.||..+... .. -.....+.+...+.++-.+++......... .. -......|++.+.|. +-.|..+
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~---~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS-VL---TKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB-CC---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 6667654211 11 123456788999999999999887642111 10 123457788889884 4344443
No 55
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.09 E-value=8.6e-06 Score=73.74 Aligned_cols=89 Identities=16% Similarity=0.256 Sum_probs=75.0
Q ss_pred cccccccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCc-CCCC
Q 045152 415 ENISIMPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPD-SLLQ 493 (533)
Q Consensus 415 ~~~~ilp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~-~~~~ 493 (533)
++..+.+.++.|.+++ ..+..+|..+..+++|++|+++++. +..++. ..+..|++|++|+|++ ..|..+|+ .+.+
T Consensus 25 ip~~~~~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~-~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~ 100 (193)
T 2wfh_A 25 LPKGIPRDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNR-ISTLSN-QSFSNMTQLLTLILSY-NRLRCIPPRTFDG 100 (193)
T ss_dssp CCSCCCTTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCS-SCCCBCCTTTTTT
T ss_pred CCCCCCCCCCEEECCC-CcCchhHHHhhcccCCCEEECCCCc-CCEeCH-hHccCCCCCCEEECCC-CccCEeCHHHhCC
Confidence 3444556899999988 5678999999999999999999765 888874 4588999999999999 57988885 5899
Q ss_pred CCCcceeeccCCch
Q 045152 494 ITTLKELGMEGSPL 507 (533)
Q Consensus 494 l~~L~~L~~~~c~~ 507 (533)
+++|++|+++++..
T Consensus 101 l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 101 LKSLRLLSLHGNDI 114 (193)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCCC
Confidence 99999999998864
No 56
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.08 E-value=2.6e-06 Score=77.37 Aligned_cols=83 Identities=12% Similarity=0.170 Sum_probs=71.5
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
+|.|++|.+++|.--...|..+..+++|++|++++|..+..+| .+..+++|++|++++| .+..+| .+..+++|++
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQ 185 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCE
Confidence 7889999999976655678888899999999999988788887 6788999999999996 688888 7899999999
Q ss_pred eeccCCch
Q 045152 500 LGMEGSPL 507 (533)
Q Consensus 500 L~~~~c~~ 507 (533)
|++++++.
T Consensus 186 L~l~~N~i 193 (197)
T 4ezg_A 186 LYAFSQTI 193 (197)
T ss_dssp EEECBC--
T ss_pred EEeeCccc
Confidence 99998874
No 57
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.07 E-value=1.5e-05 Score=73.83 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=48.5
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L 497 (533)
++.|++|++++ ..+..+|.. +..+++|++|+++++. +..++. ..+..+++|++|+|++ .++..+|+. +..+++|
T Consensus 79 l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 79 LRSLNSLVLYG-NKITELPKSLFEGLFSLQLLLLNANK-INCLRV-DAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAI 154 (220)
T ss_dssp CSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTC
T ss_pred CcCCCEEECCC-CcCCccCHhHccCCCCCCEEECCCCC-CCEeCH-HHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCC
Confidence 44566666665 344555544 3456666666666543 555542 3455666666666666 456666643 5666667
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|+++++|
T Consensus 155 ~~L~L~~N~ 163 (220)
T 2v9t_B 155 QTMHLAQNP 163 (220)
T ss_dssp CEEECCSSC
T ss_pred CEEEeCCCC
Confidence 777766665
No 58
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.05 E-value=2.8e-06 Score=75.61 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=39.7
Q ss_pred ccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCC-CCCCCcceEEeccCCCCCCCCc--CCCCCCCcc
Q 045152 422 CLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDH-IFLPRLSSLRIEYCPKLKLLPD--SLLQITTLK 498 (533)
Q Consensus 422 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~-~~l~~L~~L~l~~C~~l~~lP~--~~~~l~~L~ 498 (533)
.|++|+++++ .+..+ +.+..+++|++|+++++. +..+| +.+ +.+++|++|++++| .+..+|+ .+.++++|+
T Consensus 43 ~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 43 QFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNR-ICRIG--EGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLT 116 (176)
T ss_dssp CCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSC-CCEEC--SCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCC
T ss_pred CCCEEECCCC-CCCcc-cccccCCCCCEEECCCCc-ccccC--cchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCC
Confidence 4555555553 23333 344455555555555443 44444 232 44555555555553 4455554 455555555
Q ss_pred eeeccCCc
Q 045152 499 ELGMEGSP 506 (533)
Q Consensus 499 ~L~~~~c~ 506 (533)
+|++++|+
T Consensus 117 ~L~l~~N~ 124 (176)
T 1a9n_A 117 YLCILRNP 124 (176)
T ss_dssp EEECCSSG
T ss_pred EEEecCCC
Confidence 55555554
No 59
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.04 E-value=1.1e-05 Score=90.09 Aligned_cols=154 Identities=22% Similarity=0.222 Sum_probs=80.0
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhh---hccC-C-ceEEEEeCCchhHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV---KRNF-E-KVIWVCVSDTFEEIRV 256 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~F-~-~~~wv~vs~~~~~~~l 256 (533)
.+++||++++..+.+.|... ....+.++|++|+||||||+.+.+...- .... . .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 35899999999999998543 2334689999999999999999863210 0011 1 223333221100
Q ss_pred HHHHHHHhCCCCCCCccHHH-HHHHHHHHhC-CceEEEEEeCCCCCC--------ccccchhhhcccCCCCCceEEEEec
Q 045152 257 AKAIIEGLGVSASGLSEFES-LMKQIQEYIT-RKKFFLVLDDVWDGD--------YKKWNPFFSCLKNGHHESKILITTR 326 (533)
Q Consensus 257 ~~~il~~l~~~~~~~~~~~~-l~~~l~~~l~-~kr~LlVLDdv~~~~--------~~~~~~l~~~l~~~~~gs~IiiTtR 326 (533)
+. ....+... +...+...-. +++.+|+||+++... .+....+...+.. .+..+|.+|.
T Consensus 240 ---------g~-~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------GA-KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEEC
T ss_pred ---------cC-ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecC
Confidence 00 00011222 2222222222 367899999996532 1111223333322 2344565555
Q ss_pred chHHHh-----hh-CCCCeeeCCCCChHhhHHHHHHh
Q 045152 327 DRSVAL-----QL-GSIDIIPVKELAEEECWSLLERL 357 (533)
Q Consensus 327 ~~~v~~-----~~-~~~~~~~l~~L~~~~~~~Lf~~~ 357 (533)
...... .+ .....+.+++++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 443211 11 12345889999999999998754
No 60
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.04 E-value=8.5e-06 Score=74.25 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=61.9
Q ss_pred hHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC
Q 045152 190 EKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS 269 (533)
Q Consensus 190 e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~ 269 (533)
..+.+.+++..... ......+.|+|++|+|||+||+.+++. .......++|++++ .+...+...+...
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~-- 104 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQDQ-- 104 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC---C--
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhccc--
Confidence 34455555543221 112268899999999999999999974 33333455666542 3444444333211
Q ss_pred CCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccch--hhh-cccCC-CCCceEEEEecc
Q 045152 270 GLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNP--FFS-CLKNG-HHESKILITTRD 327 (533)
Q Consensus 270 ~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~--l~~-~l~~~-~~gs~IiiTtR~ 327 (533)
........+. +.-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 105 ---~~~~~~~~~~-----~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 ---TMNEKLDYIK-----KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCHHHHHHHH-----HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---hHHHHHHHhc-----CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 1222223332 12389999997644334432 322 22211 235678888874
No 61
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.04 E-value=7.5e-05 Score=73.34 Aligned_cols=187 Identities=14% Similarity=0.052 Sum_probs=98.9
Q ss_pred CceeechhhHHHHHHHHhCC----C--ccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCE----S--SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
.+++|.++.++.|.+.+... . .......+.+.|+|++|+|||+||+.+.+... .. ..+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHH----
Confidence 46889998888888766311 0 00112346789999999999999999987320 11 12233332211
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCcc-------c----cchhhhcccC---CCCCceE
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYK-------K----WNPFFSCLKN---GHHESKI 321 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~-------~----~~~l~~~l~~---~~~gs~I 321 (533)
.... ......+...+...-..++.+|+||+++..... . ...+...+.. ...+..|
T Consensus 84 ----------~~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 84 ----------SKWL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp ----------CSSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred ----------hhhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 0000 011122222222222456789999999653110 0 0112222211 2234555
Q ss_pred EEEecchHHHh-hh--CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc-hhHHH
Q 045152 322 LITTRDRSVAL-QL--GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL-AAKVI 391 (533)
Q Consensus 322 iiTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 391 (533)
|.||..+.... .+ .....+.++..+.++-.+++........ .. --......|++.+.|..- .+..+
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-~~---l~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ-NS---LTEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC-BC---CCHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC-CC---CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 55665432111 11 2245688899999999999988663111 11 012345778889988744 34444
No 62
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.02 E-value=1.3e-05 Score=74.11 Aligned_cols=85 Identities=20% Similarity=0.184 Sum_probs=70.4
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCC-cCCCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLP-DSLLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP-~~~~~l~~L~ 498 (533)
++.|++|.++++.--...|..+..+++|++|+++++. +..+|. ..+..+++|++|+|++ .++..+| ..+.++++|+
T Consensus 55 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~-~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPK-SLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCH-hHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCC
Confidence 6789999999855434447888999999999999765 888884 3367899999999999 5788875 6788999999
Q ss_pred eeeccCCch
Q 045152 499 ELGMEGSPL 507 (533)
Q Consensus 499 ~L~~~~c~~ 507 (533)
+|+++++..
T Consensus 132 ~L~L~~N~l 140 (220)
T 2v9t_B 132 LLSLYDNKL 140 (220)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcC
Confidence 999999874
No 63
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.02 E-value=1e-05 Score=75.36 Aligned_cols=84 Identities=25% Similarity=0.222 Sum_probs=71.7
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~ 498 (533)
++.|++|.++++ .+..+|.. +..+++|++|+++++ .+..+|. ..+..+++|++|+|++ .+|..+|..+.++++|+
T Consensus 63 l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~ 138 (229)
T 3e6j_A 63 LINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPS-AVFDRLVHLKELFMCC-NKLTELPRGIERLTHLT 138 (229)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCS
T ss_pred ccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccCh-hHhCcchhhCeEeccC-CcccccCcccccCCCCC
Confidence 678999999984 46778755 578999999999976 4888883 3467899999999999 58999999999999999
Q ss_pred eeeccCCch
Q 045152 499 ELGMEGSPL 507 (533)
Q Consensus 499 ~L~~~~c~~ 507 (533)
+|+++++..
T Consensus 139 ~L~L~~N~l 147 (229)
T 3e6j_A 139 HLALDQNQL 147 (229)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcC
Confidence 999998853
No 64
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.02 E-value=2.1e-06 Score=74.03 Aligned_cols=81 Identities=22% Similarity=0.227 Sum_probs=39.8
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCC-CCCccCCCCCCCcceEEeccCCCCCCCC--cCCCCCCC
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEE-LPILEDHIFLPRLSSLRIEYCPKLKLLP--DSLLQITT 496 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~-lp~~~~~~~l~~L~~L~l~~C~~l~~lP--~~~~~l~~ 496 (533)
++.|++|.+++| .+..+ ..+..+++|++|+++++. +.. +| ..++.+++|++|++++| .+..+| ..+.++++
T Consensus 41 l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~--~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~ 114 (149)
T 2je0_A 41 FEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGGLE--VLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLEN 114 (149)
T ss_dssp CTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSCTH--HHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTT
T ss_pred cCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccchHH--HHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCC
Confidence 344555555543 33333 344445555555555443 333 33 23334555555555553 355543 45555555
Q ss_pred cceeeccCCc
Q 045152 497 LKELGMEGSP 506 (533)
Q Consensus 497 L~~L~~~~c~ 506 (533)
|++|++++|+
T Consensus 115 L~~L~l~~N~ 124 (149)
T 2je0_A 115 LKSLDLFNCE 124 (149)
T ss_dssp CCEEECTTCG
T ss_pred CCEEeCcCCc
Confidence 5555555554
No 65
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.02 E-value=4.3e-06 Score=91.67 Aligned_cols=83 Identities=18% Similarity=0.152 Sum_probs=74.4
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|+.|+++++. +..+|..+..+.+|++|+|+++. |..+| ..++.|++|++|+|++| +|..+|+.+.+|++|++
T Consensus 223 l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp--~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 223 DQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELP--AEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCC--GGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSE
T ss_pred CCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccC--hhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCE
Confidence 6789999999855 56899999999999999999775 88999 78999999999999995 68899999999999999
Q ss_pred eeccCCch
Q 045152 500 LGMEGSPL 507 (533)
Q Consensus 500 L~~~~c~~ 507 (533)
|++++|..
T Consensus 298 L~L~~N~l 305 (727)
T 4b8c_D 298 FYFFDNMV 305 (727)
T ss_dssp EECCSSCC
T ss_pred EECCCCCC
Confidence 99999853
No 66
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.01 E-value=2.3e-05 Score=71.60 Aligned_cols=83 Identities=25% Similarity=0.366 Sum_probs=57.4
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L 497 (533)
++.|++|.++++ .+..+|.. +..+++|++|+++++. +..+|. ..+..+++|++|+++++ .+..+|+. +.++++|
T Consensus 75 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 75 LTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPD-GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSL 150 (208)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred CCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCCc-CcccCH-hHhccCCcCCEEECCCC-ccceeCHHHhccCCCc
Confidence 567777777764 45555544 4667788888887654 666663 23567788888888774 67777765 6778888
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++++
T Consensus 151 ~~L~l~~N~ 159 (208)
T 2o6s_A 151 QYIWLHDNP 159 (208)
T ss_dssp CEEECCSCC
T ss_pred cEEEecCCC
Confidence 888887765
No 67
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.01 E-value=2.8e-05 Score=80.58 Aligned_cols=147 Identities=18% Similarity=0.148 Sum_probs=78.7
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccC-----CceEEEEeCCchhHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF-----EKVIWVCVSDTFEEIRV 256 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-----~~~~wv~vs~~~~~~~l 256 (533)
.+++||+.+++.+...|.... ..-+.|+|++|+|||+||+.+... +...+ ...-++.+.-.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC------
Confidence 359999999999999996432 334679999999999999998863 21111 11112211111
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHHHh----
Q 045152 257 AKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSVAL---- 332 (533)
Q Consensus 257 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~---- 332 (533)
....+. ....... .+...-..++.+|++|. ..+....+...+..+ ..++|.+|.......
T Consensus 246 -----~~~~g~--~e~~~~~---~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -----TKYRGE--FEDRLKK---VMDEIRQAGNIILFIDA----AIDASNILKPSLARG--ELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTTHHH---HHHHHHTCCCCEEEECC------------CCCTTSS--SCEEEEECCTTTTHHHHTT
T ss_pred -----ccccch--HHHHHHH---HHHHHHhcCCeEEEEeC----chhHHHHHHHhhcCC--CEEEEecCCHHHHHHHhhc
Confidence 000000 0011222 22222335678899991 112233344444322 345666555443211
Q ss_pred ---hhCCCCeeeCCCCChHhhHHHHHHhh
Q 045152 333 ---QLGSIDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 333 ---~~~~~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
.......+.+++.+.++..+++....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11123468999999999999998755
No 68
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.01 E-value=4.1e-05 Score=76.38 Aligned_cols=185 Identities=10% Similarity=0.050 Sum_probs=99.1
Q ss_pred CceeechhhHHHHHHHHhCC----C--ccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCE----S--SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
.+++|.+..++.+.+.+... . .......+.+.|+|++|+|||+||+.+.+. ... ..+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhc---
Confidence 46899999999998877421 0 000124567899999999999999999863 211 223344332110
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCc-----------cccchhhhcccC----CCCCc
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQE-YITRKKFFLVLDDVWDGDY-----------KKWNPFFSCLKN----GHHES 319 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdv~~~~~-----------~~~~~l~~~l~~----~~~gs 319 (533)
. ...........+.. .-..++.+|+||+++.... .....+...+.. ...+.
T Consensus 156 -----------~--~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------K--WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------S--STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------c--ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 0 00111111222222 2235678999999943210 011223322221 12244
Q ss_pred eEEEEecchH-HHhhh--CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCC-cchhHHH
Q 045152 320 KILITTRDRS-VALQL--GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGL-PLAAKVI 391 (533)
Q Consensus 320 ~IiiTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 391 (533)
.||.||.... +...+ .....+.+...+.++..+++...+.... .. --......|++.+.|. +-.+..+
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~---l~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ-CC---LSEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC-BC---CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC-CC---ccHHHHHHHHHHcCCCCHHHHHHH
Confidence 5555665432 11111 2234678889999999998887663111 11 1134567788888884 4445544
No 69
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.00 E-value=1.3e-05 Score=74.23 Aligned_cols=84 Identities=12% Similarity=0.174 Sum_probs=67.7
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCC-CcCCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLL-PDSLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~l-P~~~~~l~~L 497 (533)
++.|++|.++++ .+..+|.. +..+++|++|+++++. +..++. ..+..+++|++|+|++ .++..+ |..+..+++|
T Consensus 80 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L 155 (220)
T 2v70_A 80 ASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNR-ITCVGN-DSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSL 155 (220)
T ss_dssp CTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCT-TSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTC
T ss_pred CCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCc-CCeECH-hHcCCCccCCEEECCC-CcCCEECHHHhcCCCCC
Confidence 678899999884 45666544 7789999999999765 777643 5788899999999999 578887 6788999999
Q ss_pred ceeeccCCch
Q 045152 498 KELGMEGSPL 507 (533)
Q Consensus 498 ~~L~~~~c~~ 507 (533)
++|+++++|.
T Consensus 156 ~~L~L~~N~l 165 (220)
T 2v70_A 156 STLNLLANPF 165 (220)
T ss_dssp CEEECCSCCE
T ss_pred CEEEecCcCC
Confidence 9999998873
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.00 E-value=5.3e-06 Score=77.75 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=50.0
Q ss_pred ccccceEEEeecCCcccCCc-cccccCccceeecccCCCCCCCCCccCCCCCCCcc---eEEeccCCCCCCCCcC-CCCC
Q 045152 420 MPCLSVLRVYLCPKLKVLPD-YLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLS---SLRIEYCPKLKLLPDS-LLQI 494 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~---~L~l~~C~~l~~lP~~-~~~l 494 (533)
++.|++|.+++|..+..+|. .+..+++|++|+++++. +..+| .++.+++|+ +|++++++.+..+|+. +.++
T Consensus 79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp---~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l 154 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFP---DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154 (239)
T ss_dssp CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCC---CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Ccccc---ccccccccccccEEECCCCcchhhcCcccccch
Confidence 45666666666556666553 34556666666666554 55555 245555555 6666665566666643 5666
Q ss_pred CCcc-eeeccCCc
Q 045152 495 TTLK-ELGMEGSP 506 (533)
Q Consensus 495 ~~L~-~L~~~~c~ 506 (533)
++|+ +|+++++.
T Consensus 155 ~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 155 CNETLTLKLYNNG 167 (239)
T ss_dssp BSSEEEEECCSCC
T ss_pred hcceeEEEcCCCC
Confidence 6777 77766654
No 71
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.99 E-value=3.4e-06 Score=72.41 Aligned_cols=110 Identities=11% Similarity=0.056 Sum_probs=62.1
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 262 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 262 (533)
+++|++..+.++.+.+.... .....|.|+|++|+|||++|+.+++... ..+.++++.- .....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~--~~~~~----- 67 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----KRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEY--LIDMP----- 67 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----TCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTH--HHHCH-----
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhC--ChHhh-----
Confidence 57899999888888875322 1223478999999999999999987421 2222222211 11111
Q ss_pred HhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCC-CCCceEEEEecc
Q 045152 263 GLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNG-HHESKILITTRD 327 (533)
Q Consensus 263 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~-~~gs~IiiTtR~ 327 (533)
..+.+.. +.-.++||+++.........+...+... ..+.++|.||..
T Consensus 68 ----------------~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 68 ----------------MELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ----------------HHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ----------------hhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111111 2346899999776544444455544432 345678887764
No 72
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.98 E-value=1.3e-05 Score=72.35 Aligned_cols=83 Identities=19% Similarity=0.345 Sum_probs=66.8
Q ss_pred ccccceEEEeecCCcccC-CccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCC-CcCCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVL-PDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLL-PDSLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~l-P~~~~~l~~L 497 (533)
++.|++|.++++. +..+ |..+..+.+|++|++++.. +..+|. ..+..+++|++|+|++ .++..+ |..+..+++|
T Consensus 53 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L 128 (192)
T 1w8a_A 53 LPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK-IKEISN-KMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSL 128 (192)
T ss_dssp CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCC-CCEECS-SSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTC
T ss_pred CCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCc-CCccCH-HHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCC
Confidence 6789999998854 4444 7778889999999999755 777773 3478899999999999 467665 6788899999
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++++
T Consensus 129 ~~L~L~~N~ 137 (192)
T 1w8a_A 129 TSLNLASNP 137 (192)
T ss_dssp CEEECTTCC
T ss_pred CEEEeCCCC
Confidence 999998876
No 73
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.98 E-value=2e-05 Score=70.10 Aligned_cols=83 Identities=24% Similarity=0.358 Sum_probs=66.0
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCC-CCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSL-LQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~-~~l~~L 497 (533)
++.|++|.++++ .+..+|.. +..+++|++|+++++. +..+|. ..+..+++|++|+++++ .+..+|+.+ .++++|
T Consensus 51 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L 126 (177)
T 2o6r_A 51 LTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK-LQSLPN-GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSL 126 (177)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred cccccEEECCCC-cceEeChhHccCCCccCEEECCCCC-ccccCH-HHhhCCcccCEEECcCC-cceEeCHHHhcCCccc
Confidence 567889998874 56677655 5778999999998754 777773 34678999999999984 888888764 778999
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++++
T Consensus 127 ~~L~l~~N~ 135 (177)
T 2o6r_A 127 QKIWLHTNP 135 (177)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 999998887
No 74
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.98 E-value=3.5e-05 Score=68.44 Aligned_cols=88 Identities=30% Similarity=0.347 Sum_probs=71.1
Q ss_pred ccccccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCC
Q 045152 416 NISIMPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQ 493 (533)
Q Consensus 416 ~~~ilp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~ 493 (533)
+..+.+.++.|.++++ .+..+|.. +..+++|++|+++++. +..+|. ..++.+++|++|++++ .++..+|+. +.+
T Consensus 23 p~~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~ 98 (177)
T 2o6r_A 23 PTGIPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPD-GVFDKLTKLTILYLHE-NKLQSLPNGVFDK 98 (177)
T ss_dssp CTTCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred CCCCCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCc-ceEeCh-hHccCCCccCEEECCC-CCccccCHHHhhC
Confidence 3345678999999984 46677654 5789999999999764 888883 3468899999999999 589999875 688
Q ss_pred CCCcceeeccCCch
Q 045152 494 ITTLKELGMEGSPL 507 (533)
Q Consensus 494 l~~L~~L~~~~c~~ 507 (533)
+++|++|+++++..
T Consensus 99 l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 99 LTQLKELALDTNQL 112 (177)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CcccCEEECcCCcc
Confidence 99999999998864
No 75
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=2.6e-05 Score=75.82 Aligned_cols=148 Identities=13% Similarity=0.026 Sum_probs=91.5
Q ss_pred chhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchh-hhccCCceEEEEeCC-chhHHHHHHHHHHHh
Q 045152 187 RVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE-VKRNFEKVIWVCVSD-TFEEIRVAKAIIEGL 264 (533)
Q Consensus 187 R~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~-~~~~~~l~~~il~~l 264 (533)
-++-++.+...+.. ++.....++|++|.||||+|+.+.+... ....+....+++.++ ...+.. .+++.+.+
T Consensus 2 ~~~~~~~L~~~i~~------~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~ 74 (305)
T 2gno_A 2 AKDQLETLKRIIEK------SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFL 74 (305)
T ss_dssp --CHHHHHHHHHHT------CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHC------CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHH
Confidence 34455666666632 2367889999999999999999876311 111122334454332 222222 22333333
Q ss_pred CCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecch-HHHhhhCCCCeeeCC
Q 045152 265 GVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDR-SVALQLGSIDIIPVK 343 (533)
Q Consensus 265 ~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~-~v~~~~~~~~~~~l~ 343 (533)
...+ ..+++-++|+|+++..+....+.|...+....+.+.+|++|.++ .+...+..- .++++
T Consensus 75 ~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~ 137 (305)
T 2gno_A 75 NYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVV 137 (305)
T ss_dssp TSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEE
T ss_pred hhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCC
Confidence 2111 12456789999998776666777888787666677777776543 333333334 89999
Q ss_pred CCChHhhHHHHHHhh
Q 045152 344 ELAEEECWSLLERLA 358 (533)
Q Consensus 344 ~L~~~~~~~Lf~~~a 358 (533)
+++.++..+.+.+..
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999988765
No 76
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=9.3e-07 Score=78.07 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=63.1
Q ss_pred ccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCC----CCcceEEeccCCCCCCCC-cCCCCCCC
Q 045152 422 CLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFL----PRLSSLRIEYCPKLKLLP-DSLLQITT 496 (533)
Q Consensus 422 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l----~~L~~L~l~~C~~l~~lP-~~~~~l~~ 496 (533)
.|+.|++++|.--..=-..+..+++|++|+|++|..+..-- +..+..+ ++|++|+|++|+++..-- ..+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 58999999987322222345678999999999999876421 1233333 479999999999986411 23567899
Q ss_pred cceeeccCCchhH
Q 045152 497 LKELGMEGSPLLE 509 (533)
Q Consensus 497 L~~L~~~~c~~l~ 509 (533)
|++|++++||.+.
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999999654
No 77
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.97 E-value=0.0001 Score=75.79 Aligned_cols=187 Identities=14% Similarity=0.063 Sum_probs=98.6
Q ss_pred CceeechhhHHHHHHHHhCC----C--ccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCE----S--SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
.+++|.+..++.|.+.+... . .......+.+.|+|++|+|||+||+.+.+. . ...-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH----
Confidence 46899999999888876311 0 001123568899999999999999999873 2 112234433321
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCcc-------cc----chhhhcccC---CCCCceE
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYK-------KW----NPFFSCLKN---GHHESKI 321 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~-------~~----~~l~~~l~~---~~~gs~I 321 (533)
+. ....+.. ......+. ...-..++.+|+||+++..... .. ..+...+.. ...+..|
T Consensus 204 l~----~~~~g~~--~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LV----SKWLGES--EKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp ------------C--CCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HH----hhhcchH--HHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 11 1111111 11122222 2222356789999999653110 01 112222211 2345566
Q ss_pred EEEecchHHHh-h-h-CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCc-chhHHH
Q 045152 322 LITTRDRSVAL-Q-L-GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLP-LAAKVI 391 (533)
Q Consensus 322 iiTtR~~~v~~-~-~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~ 391 (533)
|.||..+.... . . .....+.++..+.++...+|....... .... -......|++.+.|.. -.|..+
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~--~~~l--~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGST--QNSL--TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTS--CEEC--CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcC--CCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 66776542211 1 1 223567888888899989988876311 1110 1234577888898854 344433
No 78
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.95 E-value=2.1e-05 Score=72.76 Aligned_cols=84 Identities=12% Similarity=0.222 Sum_probs=67.6
Q ss_pred ccccceEEEeecCCcccCCc-cccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCC-CcCCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPD-YLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLL-PDSLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~l-P~~~~~l~~L 497 (533)
++.|++|.++++ .+..++. .+..+++|++|+++++. +..+|. ..+..+++|++|+|++ .++..+ |..+.++++|
T Consensus 56 l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 56 LPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR-LENVQH-KMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSV 131 (220)
T ss_dssp CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCG-GGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTC
T ss_pred CCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc-cCccCH-hHhcCCcCCCEEECCC-CcCCeECHhHcCCCccC
Confidence 678999999884 4566654 67889999999999765 777773 3478899999999999 467776 5778899999
Q ss_pred ceeeccCCch
Q 045152 498 KELGMEGSPL 507 (533)
Q Consensus 498 ~~L~~~~c~~ 507 (533)
++|++++|..
T Consensus 132 ~~L~L~~N~l 141 (220)
T 2v70_A 132 RLLSLYDNQI 141 (220)
T ss_dssp SEEECTTSCC
T ss_pred CEEECCCCcC
Confidence 9999998863
No 79
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.95 E-value=1.9e-05 Score=71.35 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=71.9
Q ss_pred cccccccccceEEEeecCCcccCCcc--ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-C
Q 045152 415 ENISIMPCLSVLRVYLCPKLKVLPDY--LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-L 491 (533)
Q Consensus 415 ~~~~ilp~L~~L~l~~c~~l~~lp~~--l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~ 491 (533)
++..+.+.++.|.++++ .+..+|.. +..+++|++|+++++. +..++. ..+..+++|++|+|++ .+|..+|+. +
T Consensus 23 ip~~~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~-N~l~~~~~~~~ 98 (192)
T 1w8a_A 23 IPRDIPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEP-NAFEGASHIQELQLGE-NKIKEISNKMF 98 (192)
T ss_dssp CCSCCCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCT-TTTTTCTTCCEEECCS-CCCCEECSSSS
T ss_pred CccCCCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCH-hHcCCcccCCEEECCC-CcCCccCHHHh
Confidence 33445558999999984 66777753 7889999999999765 777642 5788999999999999 578888764 8
Q ss_pred CCCCCcceeeccCCch
Q 045152 492 LQITTLKELGMEGSPL 507 (533)
Q Consensus 492 ~~l~~L~~L~~~~c~~ 507 (533)
.++++|++|+++++..
T Consensus 99 ~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQI 114 (192)
T ss_dssp TTCTTCCEEECCSSCC
T ss_pred cCCCCCCEEECCCCcC
Confidence 8999999999999864
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.95 E-value=2.7e-05 Score=74.46 Aligned_cols=84 Identities=27% Similarity=0.372 Sum_probs=62.2
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L 497 (533)
++.|++|.+++|. +..+|.. +..+++|++|+++++. +..+|. ..++.+++|++|++++| ++..+|+. +.++++|
T Consensus 108 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 108 LTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPK-GVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQL 183 (272)
T ss_dssp CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCc-cCccCH-HHhccCccCCEEECCCC-CcCccCHHHhcCCccC
Confidence 5678888888754 4555544 5778888888888774 777773 33577888888888886 67777755 5778888
Q ss_pred ceeeccCCch
Q 045152 498 KELGMEGSPL 507 (533)
Q Consensus 498 ~~L~~~~c~~ 507 (533)
++|++++|..
T Consensus 184 ~~L~L~~N~l 193 (272)
T 3rfs_A 184 KDLRLYQNQL 193 (272)
T ss_dssp CEEECCSSCC
T ss_pred CEEECCCCcC
Confidence 8888888763
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.95 E-value=2.9e-05 Score=75.09 Aligned_cols=83 Identities=28% Similarity=0.373 Sum_probs=46.7
Q ss_pred ccccceEEEeecCCcccCC-ccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCC-CCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLP-DYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSL-LQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~-~~l~~L 497 (533)
++.|++|.+++ ..+..+| ..+..+++|++|+++++. +..+|. ..+..+++|+.|+|++ .+|+.+|+++ .++++|
T Consensus 99 l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 99 LPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNE-LKTLPP-GLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENL 174 (290)
T ss_dssp CTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTC
T ss_pred CCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCC-CCccCh-hhcccccCCCEEECCC-CcCCccCHHHhcCcCCC
Confidence 44566666655 3344444 335556666666666543 555552 2345566666666666 3566666543 456666
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++|.
T Consensus 175 ~~L~L~~N~ 183 (290)
T 1p9a_G 175 DTLLLQENS 183 (290)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 666666654
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.94 E-value=3.1e-05 Score=73.13 Aligned_cols=84 Identities=21% Similarity=0.318 Sum_probs=56.9
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCc-CCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPD-SLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~-~~~~l~~L 497 (533)
++.|++|.++++ .+..+|.. +..+++|++|+++++ .+..+|. ..++.+++|++|+|++ ..+..+|+ .+.++++|
T Consensus 106 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 106 LTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPA-GAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTC
T ss_pred cCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCH-HHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCC
Confidence 556777777763 55566654 356777777777765 3666663 2466777788888777 36667665 56677778
Q ss_pred ceeeccCCch
Q 045152 498 KELGMEGSPL 507 (533)
Q Consensus 498 ~~L~~~~c~~ 507 (533)
++|++++++.
T Consensus 182 ~~L~l~~N~~ 191 (251)
T 3m19_A 182 QTITLFGNQF 191 (251)
T ss_dssp CEEECCSCCB
T ss_pred CEEEeeCCce
Confidence 8888777764
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.93 E-value=3.2e-05 Score=72.96 Aligned_cols=84 Identities=25% Similarity=0.335 Sum_probs=63.3
Q ss_pred ccccceEEEeecCCcccCC-ccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCc-CCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLP-DYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPD-SLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~-~~~~l~~L 497 (533)
++.|++|.++++ .+..+| ..+..+++|++|+++++ .+..+|. ..+..+++|++|+|+++ +|..+|+ .+.++++|
T Consensus 82 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 82 LTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPS-GVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNL 157 (251)
T ss_dssp CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCC-cCCCcCh-hHhccCCcccEEECcCC-cCCccCHHHcCcCcCC
Confidence 567888888774 445555 34567888888888875 4777773 23577889999999884 8888886 57888999
Q ss_pred ceeeccCCch
Q 045152 498 KELGMEGSPL 507 (533)
Q Consensus 498 ~~L~~~~c~~ 507 (533)
++|++++|..
T Consensus 158 ~~L~L~~N~l 167 (251)
T 3m19_A 158 QTLSLSTNQL 167 (251)
T ss_dssp CEEECCSSCC
T ss_pred CEEECCCCcC
Confidence 9999988863
No 84
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.92 E-value=0.00013 Score=70.95 Aligned_cols=181 Identities=15% Similarity=0.107 Sum_probs=98.7
Q ss_pred CceeechhhHHHHHHHHhCCCc-------cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESS-------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (533)
.+++|.+..++.+.+.+...-. -+-.....+.|+|++|+|||+||+.+.+. ... -++.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~-----~~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQA-----NFISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC-----EEEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCC-----CEEEEE----hH
Confidence 3589999988888877642100 00124567899999999999999999873 221 223332 22
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc----------cc----cchhhhcccC--CCCC
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDY----------KK----WNPFFSCLKN--GHHE 318 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~----------~~----~~~l~~~l~~--~~~g 318 (533)
++.... ++.. . ..+...+.......+.+++||+++.... .. ...+...+.. ...+
T Consensus 84 ~l~~~~---~g~~---~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLTMW---FGES---E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHHH---HTTC---T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHhhh---cCch---H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 222221 1111 1 1122233333345678999999953100 01 1223333321 2335
Q ss_pred ceEEEEecchHHHh-h-hC---CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcch
Q 045152 319 SKILITTRDRSVAL-Q-LG---SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLA 387 (533)
Q Consensus 319 s~IiiTtR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 387 (533)
..||.||....... . .. ....+.++..+.++-.+++....... .......+ ..++..+.|.|-+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~-~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS-PVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCSSCCH----HHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC-CCCccchH----HHHHHHcCCCCHH
Confidence 56777776553221 1 12 23578899999999999888765321 11111222 4566677777754
No 85
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.91 E-value=2.9e-05 Score=74.68 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=51.4
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L~ 498 (533)
++.|++|.++++.--...|..+..+++|++|+++++. +..+|. ..++.+++|++|++++| ++..+|+. +.++++|+
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPD-DTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLD 180 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCH-hHhccCCCccEEECCCC-cccccCHHHhcCccccC
Confidence 4566666666644323234455566677777776554 555552 23566777777777774 56666653 66677777
Q ss_pred eeeccCCc
Q 045152 499 ELGMEGSP 506 (533)
Q Consensus 499 ~L~~~~c~ 506 (533)
+|++++|.
T Consensus 181 ~L~l~~n~ 188 (285)
T 1ozn_A 181 RLLLHQNR 188 (285)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 77777765
No 86
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.91 E-value=0.00025 Score=68.57 Aligned_cols=183 Identities=16% Similarity=0.101 Sum_probs=97.6
Q ss_pred CceeechhhHHHHHHHHhCCCc------cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESS------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
.+++|.+..++.+.+.+..... .-......+.|+|++|+||||+|+.+.+. .... .+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 4689999999998887632100 00123567899999999999999999863 2211 22333322110
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHH-HHHHHhCCceEEEEEeCCCCCCccc-----------cchhhhcc---cCC--CCC
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMK-QIQEYITRKKFFLVLDDVWDGDYKK-----------WNPFFSCL---KNG--HHE 318 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~-~l~~~l~~kr~LlVLDdv~~~~~~~-----------~~~l~~~l---~~~--~~g 318 (533)
.. ......... .+......++.+|+||+++...... ...+...+ +.. ..+
T Consensus 93 -----------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 00 011122222 2222224567899999995531110 00122111 111 123
Q ss_pred ceEEEEecchH-----HHhhhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc-hhHHH
Q 045152 319 SKILITTRDRS-----VALQLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL-AAKVI 391 (533)
Q Consensus 319 s~IiiTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 391 (533)
..||.||.... +.. .....+.+...+.++...++...+..... .--......+++.+.|.+- ++..+
T Consensus 160 v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGS----PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSC----CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 45666776542 222 12356777888888888888776531111 1113455778889999886 44433
No 87
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.91 E-value=4.6e-06 Score=74.23 Aligned_cols=87 Identities=18% Similarity=0.141 Sum_probs=73.6
Q ss_pred ccccceEEEeecCCcccCCccc-cccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC----CCCC
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYL-LQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS----LLQI 494 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~----~~~l 494 (533)
++.|++|.++++ .+..+|..+ ..+++|++|+++++. +..+|.+..++.+++|++|++++| .+..+|+. +..+
T Consensus 63 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l 139 (176)
T 1a9n_A 63 LRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKV 139 (176)
T ss_dssp CSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHC
T ss_pred CCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHC
Confidence 678999999985 567888765 789999999999775 788884347889999999999995 67889985 8899
Q ss_pred CCcceeeccCCchhH
Q 045152 495 TTLKELGMEGSPLLE 509 (533)
Q Consensus 495 ~~L~~L~~~~c~~l~ 509 (533)
++|++|++++++.-+
T Consensus 140 ~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 140 PQVRVLDFQKVKLKE 154 (176)
T ss_dssp TTCSEETTEECCHHH
T ss_pred CccceeCCCcCCHHH
Confidence 999999999998544
No 88
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.90 E-value=3e-05 Score=70.85 Aligned_cols=83 Identities=27% Similarity=0.328 Sum_probs=68.3
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L 497 (533)
++.|++|.++++ .+..+|.. +..+++|++|+++++. +..+|. ..+..+++|++|+++++ ++..+|+. +.++++|
T Consensus 51 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 51 LTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPN-GVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQL 126 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred cccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCH-hHhcCccCCCEEEcCCC-cCcccCHhHhccCCcC
Confidence 678999999884 56777765 4678999999999765 788873 34688999999999994 78888875 6889999
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++|.
T Consensus 127 ~~L~l~~N~ 135 (208)
T 2o6s_A 127 KDLRLYQNQ 135 (208)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 999999885
No 89
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.90 E-value=1.4e-05 Score=68.87 Aligned_cols=84 Identities=13% Similarity=0.087 Sum_probs=70.3
Q ss_pred cccccceEEEeecCCc-ccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCC-CCcCCCCCCC
Q 045152 419 IMPCLSVLRVYLCPKL-KVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKL-LPDSLLQITT 496 (533)
Q Consensus 419 ilp~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~-lP~~~~~l~~ 496 (533)
..+.++.|.+++|.-- ..+|..+..+++|++|++++|. +..++ .++.+++|++|++++| .+.. +|..+.++++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIA---NLPKLNKLKKLELSDN-RVSGGLEVLAEKCPN 89 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCT---TCCCCTTCCEEECCSS-CCCSCTHHHHHHCTT
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCch---hhhcCCCCCEEECCCC-cccchHHHHhhhCCC
Confidence 3578999999997543 3889888999999999999875 77664 7888999999999996 5666 8877777999
Q ss_pred cceeeccCCch
Q 045152 497 LKELGMEGSPL 507 (533)
Q Consensus 497 L~~L~~~~c~~ 507 (533)
|++|++++|..
T Consensus 90 L~~L~ls~N~i 100 (149)
T 2je0_A 90 LTHLNLSGNKI 100 (149)
T ss_dssp CCEEECTTSCC
T ss_pred CCEEECCCCcC
Confidence 99999999873
No 90
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.89 E-value=4.8e-05 Score=67.49 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=63.1
Q ss_pred eEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCcceeecc
Q 045152 425 VLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTLKELGME 503 (533)
Q Consensus 425 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L~~L~~~ 503 (533)
.+.++. ..+..+|..+. .+|++|++++.. +..+|. ..++.+++|++|+|++ .+|..+|++ +.++++|++|+++
T Consensus 16 ~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 16 LVNCQN-IRLASVPAGIP--TDKQRLWLNNNQ-ITKLEP-GVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp EEECCS-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEeCC-CCCCccCCCcC--CCCcEEEeCCCC-ccccCH-HHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECC
Confidence 445444 56788898775 899999999765 888753 5788999999999999 599999987 4889999999999
Q ss_pred CCch
Q 045152 504 GSPL 507 (533)
Q Consensus 504 ~c~~ 507 (533)
++..
T Consensus 90 ~N~l 93 (174)
T 2r9u_A 90 DNHL 93 (174)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 8863
No 91
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.88 E-value=1.2e-05 Score=85.31 Aligned_cols=78 Identities=22% Similarity=0.200 Sum_probs=70.4
Q ss_pred ccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcceee
Q 045152 422 CLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKELG 501 (533)
Q Consensus 422 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~L~ 501 (533)
.|+.|.++++ .+..+|. +..+++|+.|+++++. +..+| ..++.|++|++|+|++ ..|..+| .+.++++|++|+
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp--~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNR-LRALP--PALAALRCLEVLQASD-NALENVD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSC-CCCCC--GGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEE
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCccc-ccccc--hhhhcCCCCCEEECCC-CCCCCCc-ccCCCCCCcEEE
Confidence 5889999884 7788997 8999999999999765 88999 7899999999999999 5899999 899999999999
Q ss_pred ccCCc
Q 045152 502 MEGSP 506 (533)
Q Consensus 502 ~~~c~ 506 (533)
+++|.
T Consensus 515 Ls~N~ 519 (567)
T 1dce_A 515 LCNNR 519 (567)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 99885
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.88 E-value=1.8e-05 Score=74.03 Aligned_cols=83 Identities=20% Similarity=0.307 Sum_probs=63.7
Q ss_pred ccccceEEEeecCCcccCCccccccCccc---eeecccCCCCCCCCCccCCCCCCCcc-eEEeccCCCCCCCCcCCCCCC
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQ---KLRILQCPSMEELPILEDHIFLPRLS-SLRIEYCPKLKLLPDSLLQIT 495 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~---~L~l~~~~~l~~lp~~~~~~~l~~L~-~L~l~~C~~l~~lP~~~~~l~ 495 (533)
++.|++|.++++. +..+|. +..+.+|+ +|++++++.+..+|. ..+..+++|+ +|++++ ..+..+|+.....+
T Consensus 104 l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~~ 179 (239)
T 2xwt_C 104 LPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYN-NGFTSVQGYAFNGT 179 (239)
T ss_dssp CTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCS-CCCCEECTTTTTTC
T ss_pred CCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCC-CCCcccCHhhcCCC
Confidence 6678888888754 566776 66777777 888888767888873 3477788888 888888 46778887665568
Q ss_pred CcceeeccCCc
Q 045152 496 TLKELGMEGSP 506 (533)
Q Consensus 496 ~L~~L~~~~c~ 506 (533)
+|++|++++|+
T Consensus 180 ~L~~L~L~~n~ 190 (239)
T 2xwt_C 180 KLDAVYLNKNK 190 (239)
T ss_dssp EEEEEECTTCT
T ss_pred CCCEEEcCCCC
Confidence 88888888886
No 93
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.87 E-value=3.6e-05 Score=75.06 Aligned_cols=167 Identities=17% Similarity=0.292 Sum_probs=89.1
Q ss_pred ceeechhhHHHHHHHHhCCC---ccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCES---SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 259 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 259 (533)
.++|.+..++.+...+.... .........+.++|++|+|||++|+.+.+. ....-...+.++++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 46888888888887775431 001123468999999999999999999863 22222234555544322111 1111
Q ss_pred HHHHhCCCCC--CCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCC-----------CCceEEEEec
Q 045152 260 IIEGLGVSAS--GLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGH-----------HESKILITTR 326 (533)
Q Consensus 260 il~~l~~~~~--~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IiiTtR 326 (533)
+ ++.... .......+...+. ....-+++||++..........+...+..+. ..+.+|.||.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred h---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1 221111 0010011222222 1334689999997665444555555443221 1333777776
Q ss_pred ch---------------HH--------Hhh-----hCC-CCeeeCCCCChHhhHHHHHHhh
Q 045152 327 DR---------------SV--------ALQ-----LGS-IDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 327 ~~---------------~v--------~~~-----~~~-~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
.. .+ ... ... ...+.+.+++.++...++....
T Consensus 169 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 169 LGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp TTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHT
T ss_pred cCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 51 11 111 111 2467788888888888877643
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.87 E-value=5.2e-05 Score=72.38 Aligned_cols=83 Identities=28% Similarity=0.327 Sum_probs=57.5
Q ss_pred ccccceEEEeecCCcccCC-ccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLP-DYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L 497 (533)
++.|++|.++++ .+..+| ..+..+++|++|+++++. +..+|. ..+..+++|++|+|++| .+..+|+. +.++++|
T Consensus 108 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 183 (270)
T 2o6q_A 108 LVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPK-GVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTEL 183 (270)
T ss_dssp CSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred ccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCc-CCccCH-hHccCCcccceeEecCC-cCcEeChhHhccCCCc
Confidence 456777777763 344444 335677788888887654 677763 23677888888888874 67777754 6778888
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++|.
T Consensus 184 ~~L~L~~N~ 192 (270)
T 2o6q_A 184 KTLKLDNNQ 192 (270)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 888888775
No 95
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.86 E-value=9.4e-06 Score=79.51 Aligned_cols=84 Identities=21% Similarity=0.316 Sum_probs=66.1
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCC-CCCCccCCCCCCCcceEEeccCCCCC-CCCcCCCCCC-C
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSME-ELPILEDHIFLPRLSSLRIEYCPKLK-LLPDSLLQIT-T 496 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~-~lp~~~~~~~l~~L~~L~l~~C~~l~-~lP~~~~~l~-~ 496 (533)
++.|++|.++++.--..+|..+..+++|++|+++++. +. .+| ..++.+++|++|++++| .+. .+|..+.+++ +
T Consensus 100 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p--~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~ 175 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLP--PSISSLPNLVGITFDGN-RISGAIPDSYGSFSKL 175 (313)
T ss_dssp CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-EESCCC--GGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTT
T ss_pred CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-cCCcCC--hHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhc
Confidence 6678888888866555788888888888888888766 44 577 67888888889988885 454 7888888887 8
Q ss_pred cceeeccCCch
Q 045152 497 LKELGMEGSPL 507 (533)
Q Consensus 497 L~~L~~~~c~~ 507 (533)
|++|++++|..
T Consensus 176 L~~L~L~~N~l 186 (313)
T 1ogq_A 176 FTSMTISRNRL 186 (313)
T ss_dssp CCEEECCSSEE
T ss_pred CcEEECcCCee
Confidence 88888888763
No 96
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.86 E-value=1.6e-05 Score=85.83 Aligned_cols=71 Identities=18% Similarity=0.349 Sum_probs=39.3
Q ss_pred CcccCCccccccCccceeecccCCCCCC------------------CCCccCCC--CCCCcceEEeccCCCCCCCCcCCC
Q 045152 433 KLKVLPDYLLQTTTLQKLRILQCPSMEE------------------LPILEDHI--FLPRLSSLRIEYCPKLKLLPDSLL 492 (533)
Q Consensus 433 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~------------------lp~~~~~~--~l~~L~~L~l~~C~~l~~lP~~~~ 492 (533)
.+..+|..+..+++|++|+++++. +.. +| +.++ .|++|++|+|++|.-...+|+.+.
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip--~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKT--EDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTT--SCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCc--hhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 333455555555555555555544 444 55 4555 555555555555555555555555
Q ss_pred CCCCcceeeccCCc
Q 045152 493 QITTLKELGMEGSP 506 (533)
Q Consensus 493 ~l~~L~~L~~~~c~ 506 (533)
++++|++|++++|.
T Consensus 271 ~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 271 ALPEMQLINVACNR 284 (636)
T ss_dssp TCSSCCEEECTTCT
T ss_pred cCCCCCEEECcCCC
Confidence 55555555555554
No 97
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.86 E-value=5.7e-05 Score=72.11 Aligned_cols=84 Identities=24% Similarity=0.393 Sum_probs=69.8
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L 497 (533)
++.|++|.++++ .+..+|.. +..+++|++|+++++. +..+|. ..+..+++|++|+|++| .+..+|+. +..+++|
T Consensus 132 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 132 LTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPE-GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKL 207 (270)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred CcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCc-CcEeCh-hHhccCCCcCEEECCCC-cCCcCCHHHhccccCC
Confidence 678999999985 56677765 6789999999999775 777873 34778999999999996 88899875 7789999
Q ss_pred ceeeccCCch
Q 045152 498 KELGMEGSPL 507 (533)
Q Consensus 498 ~~L~~~~c~~ 507 (533)
++|+++++|.
T Consensus 208 ~~L~l~~N~~ 217 (270)
T 2o6q_A 208 KMLQLQENPW 217 (270)
T ss_dssp CEEECCSSCB
T ss_pred CEEEecCCCe
Confidence 9999999884
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.85 E-value=2.1e-05 Score=84.61 Aligned_cols=83 Identities=24% Similarity=0.322 Sum_probs=54.6
Q ss_pred ccccceEEEeecCCcccCCc-cccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPD-YLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L 497 (533)
++.|++|++++| .+..+|+ .+..+++|++|+|+++. |..+|. ..+..|++|++|++++| +|..+|+. +.++++|
T Consensus 75 l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~-~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 75 FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLAL-GAFSGLSSLQKLVAVET-NLASLENFPIGHLKTL 150 (635)
T ss_dssp CTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECG-GGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTC
T ss_pred CCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCH-HHhcCCCCCCEEECCCC-cCCCCChhhhhcCccc
Confidence 556777777764 4555654 35667777777777654 666663 23566777777777774 66777653 6777777
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++|.
T Consensus 151 ~~L~Ls~N~ 159 (635)
T 4g8a_A 151 KELNVAHNL 159 (635)
T ss_dssp CEEECCSSC
T ss_pred CeeccccCc
Confidence 777777664
No 99
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.85 E-value=0.00016 Score=72.96 Aligned_cols=186 Identities=15% Similarity=0.060 Sum_probs=96.5
Q ss_pred CceeechhhHHHHHHHHhCCCc------cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESS------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
.+++|.+..++.+.+.+..... ........+.|+|++|+|||+||+.+.+. ... ..+.++.+.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTSK-- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhcc--
Confidence 4689999999999887732110 00123467899999999999999999763 211 1233332221110
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc-------c----ccchhhhccc---C-CCCCce
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDY-------K----KWNPFFSCLK---N-GHHESK 320 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~-------~----~~~~l~~~l~---~-~~~gs~ 320 (533)
.. ......+...+...-..++.+|+||+++.... . ....+...+. . ......
T Consensus 188 --------~~-----g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 188 --------YV-----GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred --------cc-----chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 00 00111112222222234567999999954210 0 0111222221 1 122344
Q ss_pred EEEEecchHHH-hh-hCC-CCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc-hhHHH
Q 045152 321 ILITTRDRSVA-LQ-LGS-IDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL-AAKVI 391 (533)
Q Consensus 321 IiiTtR~~~v~-~~-~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 391 (533)
||.||...... .. ... ...+.+...+.++..+++...+.... ..-.......|++.+.|..- ++..+
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~----~~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG----SPLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC----CCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 55566543211 11 112 34688899999999999987763211 11123456788888888654 44433
No 100
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.85 E-value=1e-05 Score=81.82 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=45.9
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
+|.|+.|.++++.--...|..+..+++|++|+++++. +..+| .....+++|++|++++| ++..+|+.+..+++|++
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALN--LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLEN 322 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEE--CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSE
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccC--cccCCCCCCCEEECCCC-cceecCccccccCcCCE
Confidence 4556666666543333335555556666666666543 55555 34455566666666664 55556655555555555
Q ss_pred eeccCCc
Q 045152 500 LGMEGSP 506 (533)
Q Consensus 500 L~~~~c~ 506 (533)
|++++|+
T Consensus 323 L~L~~N~ 329 (390)
T 3o6n_A 323 LYLDHNS 329 (390)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 5555554
No 101
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.83 E-value=6.2e-05 Score=72.38 Aligned_cols=84 Identities=23% Similarity=0.294 Sum_probs=63.3
Q ss_pred ccccceEEEeecCCcccC-CccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVL-PDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L 497 (533)
++.|++|.++++..+..+ |..+..+++|++|+++++. +..++. ..+..+++|++|++++| .+..+|+. +.++++|
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 155 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGP-GLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNL 155 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECH-hHhhCCcCCCEEECCCC-cccccCHhHhccCCCc
Confidence 567888888887656666 5667778888888888765 555542 45777888888888884 67777754 7788888
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++|.
T Consensus 156 ~~L~l~~n~ 164 (285)
T 1ozn_A 156 THLFLHGNR 164 (285)
T ss_dssp CEEECCSSC
T ss_pred cEEECCCCc
Confidence 888888875
No 102
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.83 E-value=2.4e-05 Score=77.03 Aligned_cols=84 Identities=19% Similarity=0.153 Sum_probs=47.1
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
.+.|+.|.++++.--...|..+..+++|++|+++++. +..++. ..+..+++|++|+|++| .+..+|..+..+++|++
T Consensus 191 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~ 267 (330)
T 1xku_A 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDN-GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQV 267 (330)
T ss_dssp CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECT-TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCE
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeCh-hhccCCCCCCEEECCCC-cCccCChhhccCCCcCE
Confidence 3456666666543222234555556666666666544 444442 24555666666666664 55566666666666666
Q ss_pred eeccCCc
Q 045152 500 LGMEGSP 506 (533)
Q Consensus 500 L~~~~c~ 506 (533)
|++++|+
T Consensus 268 L~l~~N~ 274 (330)
T 1xku_A 268 VYLHNNN 274 (330)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 6666654
No 103
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.82 E-value=3.2e-05 Score=75.27 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=36.5
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..++|++..+.++.+.+.... .....|.|+|.+|+|||++|+.+.+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHH
Confidence 358999999999888875433 2234678999999999999999986
No 104
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.81 E-value=7.1e-05 Score=77.61 Aligned_cols=183 Identities=12% Similarity=0.068 Sum_probs=99.5
Q ss_pred CceeechhhHHHHHHHHhCCCcc-------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSE-------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (533)
.+++|.+..++++.+++...... +......+.|+|++|+|||+||+.+.+. .... .+.++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEch------
Confidence 35899999999998877432000 0123456899999999999999999863 2211 2333321
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc-----------cccchhhhcccC--CCCCceE
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDY-----------KKWNPFFSCLKN--GHHESKI 321 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~I 321 (533)
.+ ...+. ..........+.....+++.+|+||+++.... .....|...+.. ...+.+|
T Consensus 273 ~l----~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 EI----MSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp HH----HTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred Hh----hhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 11 11110 11122233344444456778999999942110 011223333331 2234556
Q ss_pred EEEecchHH-Hhhh----CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCC-cchhH
Q 045152 322 LITTRDRSV-ALQL----GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGL-PLAAK 389 (533)
Q Consensus 322 iiTtR~~~v-~~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~ 389 (533)
|.||..... ...+ .....+.+...+.++-.+++...+.. ........ ..+++..+.|. +-.+.
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~-~~l~~~~~----l~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-MKLADDVD----LEQVANETHGHVGADLA 412 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT-SCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc-CCCcchhh----HHHHHHHccCCcHHHHH
Confidence 667665422 1111 22346889999999999999887631 11111122 25567777775 43343
No 105
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.79 E-value=0.00016 Score=79.70 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=85.5
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhh---h-ccCCceEEEEeCCchhHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEV---K-RNFEKVIWVCVSDTFEEIRVA 257 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~-~~F~~~~wv~vs~~~~~~~l~ 257 (533)
.+++||+.+++.+.+.|... ....+.|+|++|+|||++|+.+.+...- . ..+...+|. +.-. .+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~-~~~~----~l- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-LDIG----SL- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE-CCCC-------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE-EcHH----HH-
Confidence 36899999999999998543 3345689999999999999998863110 0 012233331 1100 00
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCC--------ccc-cchhhhcccCCCCCceEEEEecc
Q 045152 258 KAIIEGLGVSASGLSEFESLMKQIQEYI-TRKKFFLVLDDVWDGD--------YKK-WNPFFSCLKNGHHESKILITTRD 327 (533)
Q Consensus 258 ~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVLDdv~~~~--------~~~-~~~l~~~l~~~~~gs~IiiTtR~ 327 (533)
+... ......+.....+.+.+ ..++.+|+|||++... ... ...+...+. ..+.++|.+|..
T Consensus 254 ------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~ 324 (758)
T 1r6b_X 254 ------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTY 324 (758)
T ss_dssp -------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECH
T ss_pred ------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCc
Confidence 0001 11122332233333333 3467899999996531 000 111222222 224556666655
Q ss_pred hHHHhhh-------CCCCeeeCCCCChHhhHHHHHHhh
Q 045152 328 RSVALQL-------GSIDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 328 ~~v~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
....... .....+.++..+.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 4432111 113368899999999988887644
No 106
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.79 E-value=1.2e-05 Score=86.93 Aligned_cols=67 Identities=15% Similarity=0.292 Sum_probs=34.3
Q ss_pred CCcccc--ccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCC--CCCcCCCCC------CCcceeeccCC
Q 045152 437 LPDYLL--QTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLK--LLPDSLLQI------TTLKELGMEGS 505 (533)
Q Consensus 437 lp~~l~--~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~--~lP~~~~~l------~~L~~L~~~~c 505 (533)
+|+.+. .+++|++|++++|.-...+| ..++.|++|++|++++|..+. .+|+.+.++ ++|++|++++|
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLP--TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCC--TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccCh--HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 555555 55555555555555444555 455555555555555544343 244444443 44444444444
No 107
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.78 E-value=8.3e-05 Score=65.63 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=63.7
Q ss_pred ceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCcceeec
Q 045152 424 SVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTLKELGM 502 (533)
Q Consensus 424 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L~~L~~ 502 (533)
+.+.+++ ..+..+|..+. .+|++|++++.. +..++. ..+..+++|++|+|++ .+|..+|++ +.++++|++|++
T Consensus 12 ~~l~~s~-n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 12 TTVDCSG-KSLASVPTGIP--TTTQVLYLYDNQ-ITKLEP-GVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCT-TTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEeCC-CCcCccCccCC--CCCcEEEcCCCc-CCccCh-hhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEEC
Confidence 4556555 56788898764 899999999654 888853 5688999999999999 589999986 489999999999
Q ss_pred cCCch
Q 045152 503 EGSPL 507 (533)
Q Consensus 503 ~~c~~ 507 (533)
+++..
T Consensus 86 ~~N~l 90 (170)
T 3g39_A 86 NDNQL 90 (170)
T ss_dssp CSSCC
T ss_pred CCCcc
Confidence 98863
No 108
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.00042 Score=69.25 Aligned_cols=181 Identities=15% Similarity=0.070 Sum_probs=98.9
Q ss_pred CceeechhhHHHHHHHHhCCCc-------cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESS-------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (533)
.++.|-++.+++|.+.+.-.-. -+-..++-|.++|++|.|||.||+.+.+. ....| +.+..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc--
Confidence 4578999888888776532100 01234577899999999999999999873 32232 2333222110
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc-----c---c------cchhhhccc--CCCCC
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDY-----K---K------WNPFFSCLK--NGHHE 318 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~-----~---~------~~~l~~~l~--~~~~g 318 (533)
.. -......+...+...-...+++|++|+++..-. . . ...++..+. ....+
T Consensus 221 ------------k~-vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 ------------KY-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp ------------SS-TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred ------------cc-cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 00 001111222222222345789999999964210 0 0 111222222 12334
Q ss_pred ceEEEEecchHHHh-----hhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcch
Q 045152 319 SKILITTRDRSVAL-----QLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLA 387 (533)
Q Consensus 319 s~IiiTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 387 (533)
..||.||..++... .-.....+.++..+.++-.++|+.+.- ........++ ..+++.+.|.--|
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~-~~~l~~dvdl----~~lA~~t~G~SGA 356 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSR-KMNLTRGINL----RKVAEKMNGCSGA 356 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT-TSBCCSSCCH----HHHHHHCCSCCHH
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhc-CCCCCccCCH----HHHHHHCCCCCHH
Confidence 45666776543321 112367899999999999999987653 1111122233 6678888886644
No 109
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.77 E-value=7.1e-05 Score=75.53 Aligned_cols=82 Identities=18% Similarity=0.309 Sum_probs=59.5
Q ss_pred ccccceEEEeecCCcccC-CccccccCccceeecccCCCCCCCCCccC-CCCCCCcceEEeccCCCCCCCC-cCCCCCCC
Q 045152 420 MPCLSVLRVYLCPKLKVL-PDYLLQTTTLQKLRILQCPSMEELPILED-HIFLPRLSSLRIEYCPKLKLLP-DSLLQITT 496 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~~-~~~l~~L~~L~l~~C~~l~~lP-~~~~~l~~ 496 (533)
++.|++|.++++. +..+ |..+..+++|++|+++++. +..+| .. ++.+++|++|++++| .+..+| ..+.++++
T Consensus 92 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 166 (390)
T 3o6n_A 92 AHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLP--RGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTS 166 (390)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCC--TTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTT
T ss_pred CCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCc-cCcCC--HHHhcCCCCCcEEECCCC-ccCccChhhccCCCC
Confidence 5678888888754 4444 4556778888888888764 77777 34 477888888888885 566654 45778888
Q ss_pred cceeeccCCc
Q 045152 497 LKELGMEGSP 506 (533)
Q Consensus 497 L~~L~~~~c~ 506 (533)
|++|++++|.
T Consensus 167 L~~L~l~~n~ 176 (390)
T 3o6n_A 167 LQNLQLSSNR 176 (390)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCc
Confidence 8888888776
No 110
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.76 E-value=2.9e-05 Score=86.32 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=21.8
Q ss_pred ccceEEEeecCCcccCCcccc--ccCccceeecccCCCCCCCCCccCCCCCCCcceEEe
Q 045152 422 CLSVLRVYLCPKLKVLPDYLL--QTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRI 478 (533)
Q Consensus 422 ~L~~L~l~~c~~l~~lp~~l~--~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l 478 (533)
.|+.|.+++| .+..+|..+. .+++|+.|+|+++. +..+| ..++.+++|+.|+|
T Consensus 729 ~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp--~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 729 LLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFP--TQPLNSSQLKAFGI 783 (876)
T ss_dssp GCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSCC--CGGGGCTTCCEEEC
T ss_pred CccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCC-CCccc--hhhhcCCCCCEEEC
Confidence 3444444443 2334444443 44444444444332 33344 33334444444444
No 111
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.76 E-value=2.8e-05 Score=74.11 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=33.8
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.++|.+..+.++.+.+.... .....+.|+|++|+|||+||+.+++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLA----PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHT----TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 57899999888887765432 12346789999999999999999864
No 112
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.76 E-value=6.6e-05 Score=80.44 Aligned_cols=83 Identities=18% Similarity=0.275 Sum_probs=62.2
Q ss_pred ccccceEEEeecCCcccCC-ccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCC-cCCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLP-DYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLP-DSLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP-~~~~~l~~L 497 (533)
++.|++|.+++|. +..+| ..+..+++|++|+++++. +..+|. ..++.+++|++|+|++| .+..+| ..+.++++|
T Consensus 98 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 173 (597)
T 3oja_B 98 AHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPR-GIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSL 173 (597)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCC-CCCCCH-HHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcC
Confidence 5678888888865 45554 445788888899888764 778873 23578889999999886 566655 468888899
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++|.
T Consensus 174 ~~L~L~~N~ 182 (597)
T 3oja_B 174 QNLQLSSNR 182 (597)
T ss_dssp CEEECTTSC
T ss_pred cEEECcCCC
Confidence 999988876
No 113
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.76 E-value=3.8e-05 Score=76.18 Aligned_cols=84 Identities=27% Similarity=0.343 Sum_probs=68.2
Q ss_pred cccceEEEeecCCcccCC-ccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 421 PCLSVLRVYLCPKLKVLP-DYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 421 p~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
+.|+.|+++.+..+..+| ..+..+.+|+.|+|++. .|..+|. ..+..|++|++|+|++ .+|..+|+++.....|++
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~ 107 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQE 107 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCH-HHhcCCcCCCEEeCCC-CccceeCHHHcccCCceE
Confidence 468899998667888887 45788999999999976 4888873 4578899999999999 789999987655555999
Q ss_pred eeccCCch
Q 045152 500 LGMEGSPL 507 (533)
Q Consensus 500 L~~~~c~~ 507 (533)
|++.+++.
T Consensus 108 l~l~~N~~ 115 (347)
T 2ifg_A 108 LVLSGNPL 115 (347)
T ss_dssp EECCSSCC
T ss_pred EEeeCCCc
Confidence 99987763
No 114
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.75 E-value=2.7e-05 Score=76.21 Aligned_cols=84 Identities=13% Similarity=0.147 Sum_probs=63.9
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCC-CCCCccCCCCCC-CcceEEeccCCCCCCCCcCCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSME-ELPILEDHIFLP-RLSSLRIEYCPKLKLLPDSLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~-~lp~~~~~~~l~-~L~~L~l~~C~~l~~lP~~~~~l~~L 497 (533)
++.|++|+++++.--..+|..+..+++|++|+++++. +. .+| ..++.++ +|++|+++++.--..+|..+.+++ |
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p--~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIP--DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECC--GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCC--HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 5678888888755444778888888888888888766 54 677 6777777 888888888543347888888876 8
Q ss_pred ceeeccCCch
Q 045152 498 KELGMEGSPL 507 (533)
Q Consensus 498 ~~L~~~~c~~ 507 (533)
++|++++|..
T Consensus 200 ~~L~Ls~N~l 209 (313)
T 1ogq_A 200 AFVDLSRNML 209 (313)
T ss_dssp SEEECCSSEE
T ss_pred cEEECcCCcc
Confidence 8888888753
No 115
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.75 E-value=7.3e-05 Score=71.44 Aligned_cols=83 Identities=25% Similarity=0.346 Sum_probs=69.0
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L 497 (533)
++.|++|.+++| .+..+|.. +..+++|++|+++++. +..+|. ..++.+++|++|++++| .+..+|+. +.++++|
T Consensus 132 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 132 LTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPE-GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSL 207 (272)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred CCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccCH-HHhcCCccCCEEECCCC-cCCccCHHHHhCCcCC
Confidence 678999999986 56677655 5789999999999875 788873 34688999999999996 68888765 6889999
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++|+
T Consensus 208 ~~L~l~~N~ 216 (272)
T 3rfs_A 208 QYIWLHDNP 216 (272)
T ss_dssp CEEECCSSC
T ss_pred CEEEccCCC
Confidence 999999876
No 116
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.73 E-value=6.8e-05 Score=72.45 Aligned_cols=84 Identities=26% Similarity=0.264 Sum_probs=70.8
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~ 498 (533)
++.|++|.++++ .+..+|.. +..+++|+.|+++++. +..+|. ..+..+++|++|+|++ ..|+.+|+++..+.+|+
T Consensus 123 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~-~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~ 198 (290)
T 1p9a_G 123 LGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNN-LTELPA-GLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLP 198 (290)
T ss_dssp CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CSCCCT-TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCS
T ss_pred CCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCc-CCccCH-HHhcCcCCCCEEECCC-CcCCccChhhcccccCC
Confidence 678999999984 56677765 4678999999999765 888984 3457799999999999 58999999999999999
Q ss_pred eeeccCCch
Q 045152 499 ELGMEGSPL 507 (533)
Q Consensus 499 ~L~~~~c~~ 507 (533)
+|+++++|.
T Consensus 199 ~l~L~~Np~ 207 (290)
T 1p9a_G 199 FAFLHGNPW 207 (290)
T ss_dssp EEECCSCCB
T ss_pred eEEeCCCCc
Confidence 999997763
No 117
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.72 E-value=5.6e-05 Score=72.30 Aligned_cols=84 Identities=20% Similarity=0.212 Sum_probs=63.6
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCC--CCcCCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKL--LPDSLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~--lP~~~~~l~~L 497 (533)
++.|++|.++++.--...|..+..+++|++|+++++. +..++. ..++.+++|++|+++++ .+.. +|..+.++++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L 151 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLEN-FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNL 151 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTT-CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTC
T ss_pred CcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCc-hhcccCCCCCEEECcCC-ccceecCchhhccCCCC
Confidence 5678888888754333334667788889999988765 666663 35788899999999884 5665 78888889999
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++|.
T Consensus 152 ~~L~Ls~N~ 160 (276)
T 2z62_A 152 EHLDLSSNK 160 (276)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCC
Confidence 999998885
No 118
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.71 E-value=5.6e-05 Score=81.04 Aligned_cols=83 Identities=19% Similarity=0.182 Sum_probs=68.9
Q ss_pred ccccceEEEeecCCcccC-CccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCC--CCCcCCCCCCC
Q 045152 420 MPCLSVLRVYLCPKLKVL-PDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLK--LLPDSLLQITT 496 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~--~lP~~~~~l~~ 496 (533)
++.|++|+++++. +..+ |..+..+++|++|+++++. +..+|. ..++.+++|++|++++| .+. .+|..+.++++
T Consensus 79 l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~ 154 (606)
T 3vq2_A 79 LHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK-LASLES-FPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTN 154 (606)
T ss_dssp CTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSC-CCCSSS-SCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTT
T ss_pred hhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCc-cccccc-cccCCCCCCCEEeCCCC-cccceechHhHhhcCC
Confidence 6789999998865 4554 7888899999999999876 677664 46889999999999996 555 58999999999
Q ss_pred cceeeccCCc
Q 045152 497 LKELGMEGSP 506 (533)
Q Consensus 497 L~~L~~~~c~ 506 (533)
|++|++++|.
T Consensus 155 L~~L~Ls~n~ 164 (606)
T 3vq2_A 155 LVHVDLSYNY 164 (606)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEccCCc
Confidence 9999999885
No 119
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.71 E-value=4.5e-05 Score=74.40 Aligned_cols=79 Identities=15% Similarity=0.242 Sum_probs=45.8
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|++|.++++. +..+| .+..+++|++|+++++. +..+| .+..+++|++|++++| .+..+|+ +.++++|++
T Consensus 84 l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 155 (308)
T 1h6u_A 84 LTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQ-ITDVT---PLAGLSNLQVLYLDLN-QITNISP-LAGLTNLQY 155 (308)
T ss_dssp CCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSC-CCCCG---GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCE
T ss_pred CCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCC-CCCch---hhcCCCCCCEEECCCC-ccCcCcc-ccCCCCccE
Confidence 4455555555533 34443 34555666666666544 45554 3556666677776664 5666664 666677777
Q ss_pred eeccCCc
Q 045152 500 LGMEGSP 506 (533)
Q Consensus 500 L~~~~c~ 506 (533)
|++++|.
T Consensus 156 L~l~~n~ 162 (308)
T 1h6u_A 156 LSIGNAQ 162 (308)
T ss_dssp EECCSSC
T ss_pred EEccCCc
Confidence 7776664
No 120
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.70 E-value=4.1e-05 Score=75.45 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=37.6
Q ss_pred cccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCccee
Q 045152 421 PCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKEL 500 (533)
Q Consensus 421 p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~L 500 (533)
+.|+.|.++++.--...|..+..+++|++|+++++. +..++. ..++.+++|++|++++| ++..+|..+.++++|++|
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L 269 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIEN-GSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVV 269 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCT-TGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEE
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCCh-hHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEE
Confidence 345555554432212222344445555555555433 343331 23444555555555553 444555555555555555
Q ss_pred eccCCc
Q 045152 501 GMEGSP 506 (533)
Q Consensus 501 ~~~~c~ 506 (533)
++++|+
T Consensus 270 ~l~~N~ 275 (332)
T 2ft3_A 270 YLHTNN 275 (332)
T ss_dssp ECCSSC
T ss_pred ECCCCC
Confidence 555443
No 121
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.70 E-value=4e-05 Score=82.32 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=68.5
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCC--CCcCCCCCCC
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKL--LPDSLLQITT 496 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~--lP~~~~~l~~ 496 (533)
++.|++|.++++ .+..+|.. +..+++|++|+++++. +..+|. ..++.|++|++|+++++ .+.. +|..+.++++
T Consensus 99 L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~-~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~ 174 (635)
T 4g8a_A 99 LSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN-LASLEN-FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTN 174 (635)
T ss_dssp CTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTSC-CCCSTT-CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTT
T ss_pred CCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCCc-CCCCCh-hhhhcCcccCeeccccC-ccccCCCchhhccchh
Confidence 678999999985 57888854 6789999999999875 888884 35888999999999985 5654 5778889999
Q ss_pred cceeeccCCc
Q 045152 497 LKELGMEGSP 506 (533)
Q Consensus 497 L~~L~~~~c~ 506 (533)
|++|++++|.
T Consensus 175 L~~L~L~~N~ 184 (635)
T 4g8a_A 175 LEHLDLSSNK 184 (635)
T ss_dssp CCEEECCSSC
T ss_pred hhhhcccCcc
Confidence 9999999885
No 122
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.69 E-value=0.00015 Score=80.02 Aligned_cols=149 Identities=18% Similarity=0.115 Sum_probs=79.4
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchh---hhccCCceEEEEeCCchhHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDE---VKRNFEKVIWVCVSDTFEEIRVAK 258 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F~~~~wv~vs~~~~~~~l~~ 258 (533)
.+++||+.+++.+...|.... ..-+.++|++|+|||++|+.+.+.-. +.......-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 369999999999999996532 33478999999999999998876310 000001111221111
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHHHhh-----
Q 045152 259 AIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSVALQ----- 333 (533)
Q Consensus 259 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~~~----- 333 (533)
.....+. -... +...+......++.+|++|.- .+....+...+.. ...++|.||........
T Consensus 245 --g~~~~G~--~e~~---l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 --GTKYRGE--FEDR---LKKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCS
T ss_pred --cccccch--HHHH---HHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhccH
Confidence 0000000 0111 222333333467789999921 1222233333332 23556666654432111
Q ss_pred --hCCCCeeeCCCCChHhhHHHHHHhh
Q 045152 334 --LGSIDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 334 --~~~~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
......+.++..+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1123568999999999999998654
No 123
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00039 Score=70.51 Aligned_cols=180 Identities=15% Similarity=0.117 Sum_probs=98.7
Q ss_pred CceeechhhHHHHHHHHhCCCc-------cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESS-------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (533)
.++.|-++.+++|.+.+.-.-. -+-..++-|.++|++|.|||+||+.+.+. ....| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc--
Confidence 4678998888887776532100 01235678999999999999999999974 22222 2333222110
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHH-HHhCCceEEEEEeCCCCCC------ccc--------cchhhhccc--CCCC
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQ-EYITRKKFFLVLDDVWDGD------YKK--------WNPFFSCLK--NGHH 317 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~-~~l~~kr~LlVLDdv~~~~------~~~--------~~~l~~~l~--~~~~ 317 (533)
............+. ..-...+++|++|+++..- ... ...++..+. ....
T Consensus 254 --------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 --------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp --------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred --------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 00111122222222 2234578999999996421 000 111222222 2233
Q ss_pred CceEEEEecchHHHhh-h-C---CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcch
Q 045152 318 ESKILITTRDRSVALQ-L-G---SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLA 387 (533)
Q Consensus 318 gs~IiiTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 387 (533)
+..||.||..++.... + . ....+.++..+.++-.++|+.+.-. .......++ ..+++.+.|+--|
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-~~~~~d~dl----~~lA~~t~G~sGA 389 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK-VKKTGEFDF----EAAVKMSDGFNGA 389 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT-SCBCSCCCH----HHHHHTCCSCCHH
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC-CCCCcccCH----HHHHHhCCCCCHH
Confidence 4567777776543321 1 1 2457888888888888888866531 111112223 5677888886543
No 124
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.68 E-value=5.7e-05 Score=77.92 Aligned_cols=83 Identities=22% Similarity=0.311 Sum_probs=61.8
Q ss_pred ccccceEEEeecCCcccCCc-cccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPD-YLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~ 498 (533)
++.|++|.++++ .+..+|. .+..+++|++|++++|..+..+|. ..+..+++|++|+|++| ++..+| .+.++++|+
T Consensus 146 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~ 221 (452)
T 3zyi_A 146 LSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLE 221 (452)
T ss_dssp CTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTS-CCSSCC-CCTTCTTCC
T ss_pred cCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCC-cccccc-ccccccccc
Confidence 567777777774 3455554 456778888888888777777774 35777888888888884 778887 477888888
Q ss_pred eeeccCCc
Q 045152 499 ELGMEGSP 506 (533)
Q Consensus 499 ~L~~~~c~ 506 (533)
+|++++|.
T Consensus 222 ~L~Ls~N~ 229 (452)
T 3zyi_A 222 ELEMSGNH 229 (452)
T ss_dssp EEECTTSC
T ss_pred EEECcCCc
Confidence 88888875
No 125
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.67 E-value=4.6e-05 Score=75.60 Aligned_cols=79 Identities=23% Similarity=0.220 Sum_probs=65.7
Q ss_pred EEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCc-CCCCCCCcceeeccC
Q 045152 426 LRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPD-SLLQITTLKELGMEG 504 (533)
Q Consensus 426 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~-~~~~l~~L~~L~~~~ 504 (533)
+..+....+..+|. +..+++|+.|+|+++..|..+|. ..++.|++|++|+|++ .+|..+|+ .+.+|++|++|++++
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCC
Confidence 34343226888999 99999999999998778999884 4688999999999999 58999886 579999999999998
Q ss_pred Cch
Q 045152 505 SPL 507 (533)
Q Consensus 505 c~~ 507 (533)
+..
T Consensus 90 N~l 92 (347)
T 2ifg_A 90 NAL 92 (347)
T ss_dssp SCC
T ss_pred Ccc
Confidence 863
No 126
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.67 E-value=5.1e-05 Score=75.13 Aligned_cols=80 Identities=21% Similarity=0.196 Sum_probs=43.3
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|++|.+++| .+..+| .+..+++|++|+++++. +..+| .+..+++|++|++++|..+..+|. +.++++|++
T Consensus 87 l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~---~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~ 159 (347)
T 4fmz_A 87 LVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDN-ISDIS---PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNY 159 (347)
T ss_dssp CTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSC-CCCCG---GGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCE
T ss_pred CCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCc-ccCch---hhccCCceeEEECCCCCCcccccc-hhhCCCCcE
Confidence 344555555543 333333 34455555555555443 44444 255566666666666665555553 566666666
Q ss_pred eeccCCc
Q 045152 500 LGMEGSP 506 (533)
Q Consensus 500 L~~~~c~ 506 (533)
|++++|.
T Consensus 160 L~l~~~~ 166 (347)
T 4fmz_A 160 LTVTESK 166 (347)
T ss_dssp EECCSSC
T ss_pred EEecCCC
Confidence 6666654
No 127
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.67 E-value=0.00028 Score=68.47 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=37.0
Q ss_pred CceeechhhHHHHHHHHhCCCc--------cCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 182 GEVCGRVEEKNELLSKLLCESS--------EQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~--------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999988877753100 00123456889999999999999999863
No 128
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00026 Score=71.63 Aligned_cols=180 Identities=16% Similarity=0.097 Sum_probs=92.1
Q ss_pred CceeechhhHHHHHHHHhCCCc-------cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESS-------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (533)
.++.|-++.+++|.+.+...-. -+-..++-|.++|++|.|||+||+.+.+. ...+| +.+..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhc--
Confidence 4688999988888776532110 01234677999999999999999999974 32222 2333222110
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCC------Cccc--------cchhhhccc--CCCCC
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDG------DYKK--------WNPFFSCLK--NGHHE 318 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~------~~~~--------~~~l~~~l~--~~~~g 318 (533)
. .-......+...+...-...++++++|+++.. .... ...++..+. ....+
T Consensus 245 ------------~-~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 245 ------------K-YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp ------------S-SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred ------------c-ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 0 00111122222222233456899999999421 0000 112222222 22345
Q ss_pred ceEEEEecchHHHh-h-h---CCCCeeeCCCCCh-HhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc
Q 045152 319 SKILITTRDRSVAL-Q-L---GSIDIIPVKELAE-EECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL 386 (533)
Q Consensus 319 s~IiiTtR~~~v~~-~-~---~~~~~~~l~~L~~-~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 386 (533)
..||.||..++... . . .....+.++.++. ++-..+|..+.- ........++ ..+++.+.|.--
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~-~~~l~~~~dl----~~lA~~t~G~sg 380 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS-KMSLAPEADL----DSLIIRNDSLSG 380 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH-SSCBCTTCCH----HHHHHHTTTCCH
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc-CCCCCcccCH----HHHHHHCCCCCH
Confidence 56677776543221 1 1 1245677876654 445556655442 2111122223 567778887653
No 129
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.67 E-value=7.6e-05 Score=76.97 Aligned_cols=84 Identities=14% Similarity=0.254 Sum_probs=54.7
Q ss_pred ccccceEEEeecCCcccC-CccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCc-CCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVL-PDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPD-SLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~-~~~~l~~L 497 (533)
++.|++|.++++. +..+ |..+..+++|++|+++++. +..+|. ..+..+++|++|+|+++ .+..+|+ .+.++++|
T Consensus 98 l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 98 LHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW-LTVIPS-GAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSL 173 (452)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSBCCT-TTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCc-CCccCh-hhhcccCCCCEEECCCC-CcceeCHhHHhcCCcc
Confidence 4567777777643 3333 3556667777777777654 666663 33666777777777774 5666664 56677777
Q ss_pred ceeeccCCch
Q 045152 498 KELGMEGSPL 507 (533)
Q Consensus 498 ~~L~~~~c~~ 507 (533)
++|++++|..
T Consensus 174 ~~L~l~~~~~ 183 (452)
T 3zyi_A 174 MRLDLGELKK 183 (452)
T ss_dssp CEEECCCCTT
T ss_pred cEEeCCCCCC
Confidence 7777777643
No 130
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.66 E-value=3.3e-05 Score=66.62 Aligned_cols=87 Identities=15% Similarity=0.106 Sum_probs=49.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRK 288 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 288 (533)
...+.|+|+.|+|||||++.++..... ..+ ..+++....-... .. ..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-~~~~~~~~~~~~~-----------------------------~~-~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-NAAYIDAASMPLT-----------------------------DA-AFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-CEEEEETTTSCCC-----------------------------GG-GGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-cEEEEcHHHhhHH-----------------------------HH-HhC
Confidence 457899999999999999999874221 111 2556654332110 11 124
Q ss_pred eEEEEEeCCCCCCccccchhhhcccC-CCCCc-eEEEEecc
Q 045152 289 KFFLVLDDVWDGDYKKWNPFFSCLKN-GHHES-KILITTRD 327 (533)
Q Consensus 289 r~LlVLDdv~~~~~~~~~~l~~~l~~-~~~gs-~IiiTtR~ 327 (533)
.-++||||+.......-+.+...+.. ...|. +||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 56889999965432222223333321 12234 38888874
No 131
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.66 E-value=4.4e-05 Score=84.38 Aligned_cols=84 Identities=18% Similarity=0.107 Sum_probs=54.9
Q ss_pred cccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCccee
Q 045152 421 PCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKEL 500 (533)
Q Consensus 421 p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~L 500 (533)
+.|++|.+++|.--..+|..+..+++|++|++++|.-...+| ..++.+++|++|+|++|.-...+|..+.++++|++|
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP--KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC--hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 455566665554444566666666677777776666333566 566677777777777765555677777777777777
Q ss_pred eccCCc
Q 045152 501 GMEGSP 506 (533)
Q Consensus 501 ~~~~c~ 506 (533)
++++|+
T Consensus 544 ~Ls~N~ 549 (768)
T 3rgz_A 544 DLNTNL 549 (768)
T ss_dssp ECCSSE
T ss_pred ECCCCc
Confidence 777765
No 132
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.64 E-value=3.1e-05 Score=75.88 Aligned_cols=83 Identities=12% Similarity=0.118 Sum_probs=62.0
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|++|.+++|. +..+|.. ..+++|++|+++++. +..+| +.+..+++|++|++++| .+..+|+.+..+++|++
T Consensus 168 l~~L~~L~L~~N~-l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~--~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 168 SDTLEHLNLQYNF-IYDVKGQ-VVFAKLKTLDLSSNK-LAFMG--PEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEH 241 (317)
T ss_dssp TTTCCEEECTTSC-CCEEECC-CCCTTCCEEECCSSC-CCEEC--GGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCE
T ss_pred cCcCCEEECCCCc-Ccccccc-cccccCCEEECCCCc-CCcch--hhhcccCcccEEECcCC-cccchhhHhhcCCCCCE
Confidence 5678888887743 4555433 347888888888765 77777 56777888888888885 78888888888888888
Q ss_pred eeccCCchh
Q 045152 500 LGMEGSPLL 508 (533)
Q Consensus 500 L~~~~c~~l 508 (533)
|++++|+..
T Consensus 242 L~l~~N~~~ 250 (317)
T 3o53_A 242 FDLRGNGFH 250 (317)
T ss_dssp EECTTCCCB
T ss_pred EEccCCCcc
Confidence 888887753
No 133
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.64 E-value=5e-05 Score=75.58 Aligned_cols=85 Identities=21% Similarity=0.247 Sum_probs=63.4
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCC-cCCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLP-DSLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP-~~~~~l~~L 497 (533)
++.|++|+++++ .+..+|.. +..+++|++|+++++. +..+|....+..+++|++|++++|..+..+| ..+.++++|
T Consensus 99 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 99 LGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp CTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence 567888888774 55667765 6678888888888764 7777732257778888888888877777765 567888888
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++|.
T Consensus 177 ~~L~l~~n~ 185 (353)
T 2z80_A 177 EELEIDASD 185 (353)
T ss_dssp EEEEEEETT
T ss_pred CEEECCCCC
Confidence 888888775
No 134
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.64 E-value=6.4e-05 Score=78.98 Aligned_cols=82 Identities=18% Similarity=0.275 Sum_probs=63.3
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L~ 498 (533)
++.|+.|.+++|.--...|..+. ++|++|+++++. +..+| ..+..+++|++|++++| ++..+|.. +.++++|+
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip--~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIP--KQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCC--GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccc--hhhhcCCCCCEEECCCC-cCCccCHHHhccCCccc
Confidence 45677777776554444554443 688888888764 77888 66778999999999996 78899987 88899999
Q ss_pred eeeccCCch
Q 045152 499 ELGMEGSPL 507 (533)
Q Consensus 499 ~L~~~~c~~ 507 (533)
+|++++||.
T Consensus 472 ~L~l~~N~~ 480 (520)
T 2z7x_B 472 KIWLHTNPW 480 (520)
T ss_dssp EEECCSSCB
T ss_pred EEECcCCCC
Confidence 999998873
No 135
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.64 E-value=9.8e-05 Score=79.09 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=48.1
Q ss_pred ccccceEEEeecCCcccCCccc-cccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYL-LQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~ 498 (533)
++.|++|.+++| .+..+|..+ ..+++|++|+++++. +..+|. ..++.+++|++|++++| .+..+| +..+++|+
T Consensus 122 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~--~~~l~~L~ 195 (597)
T 3oja_B 122 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIED-DTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLF 195 (597)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCT-TTTTTCTTCCEEECTTS-CCSBCC--GGGCTTCS
T ss_pred CCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCCh-hhhhcCCcCcEEECcCC-CCCCcC--hhhhhhhh
Confidence 456777777664 455666553 566777777777654 555442 34666777777777764 555555 34455666
Q ss_pred eeeccCC
Q 045152 499 ELGMEGS 505 (533)
Q Consensus 499 ~L~~~~c 505 (533)
+|++++|
T Consensus 196 ~L~l~~n 202 (597)
T 3oja_B 196 HANVSYN 202 (597)
T ss_dssp EEECCSS
T ss_pred hhhcccC
Confidence 6555554
No 136
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.63 E-value=5.4e-05 Score=73.98 Aligned_cols=84 Identities=25% Similarity=0.311 Sum_probs=40.2
Q ss_pred ccccceEEEeecCCcccCCcccccc-----CccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCC--CCcCC-
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQT-----TTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKL--LPDSL- 491 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l-----~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~--lP~~~- 491 (533)
++.|++|+++++ .+..+|..+..+ ++|++|+++++. +..+|. ..++.+++|++|++++|.-... +|+.+
T Consensus 120 l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 120 GPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSC-EQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp SCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred CCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchH-HHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 344555555542 233334444443 555555555443 444332 3455556666666655432222 23333
Q ss_pred -CCCCCcceeeccCCc
Q 045152 492 -LQITTLKELGMEGSP 506 (533)
Q Consensus 492 -~~l~~L~~L~~~~c~ 506 (533)
.++++|++|++++|.
T Consensus 197 ~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAG 212 (312)
T ss_dssp TTSCTTCCEEECTTSC
T ss_pred hccCCCCCEEECCCCc
Confidence 455566666665554
No 137
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.62 E-value=9.7e-05 Score=70.62 Aligned_cols=84 Identities=23% Similarity=0.324 Sum_probs=64.3
Q ss_pred ccccceEEEeecCCcccCC-ccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCc-CCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLP-DYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPD-SLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~-~~~~l~~L 497 (533)
++.|++|.++++ .+..++ ..+..+++|++|+++++. +..++. ..+..+++|++|++++| ++..+|+ .+.++++|
T Consensus 51 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 51 FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLAL-GAFSGLSSLQKLVAVET-NLASLENFPIGHLKTL 126 (276)
T ss_dssp CTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTC
T ss_pred ccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccCh-hhhcCCccccEEECCCC-CccccCchhcccCCCC
Confidence 677888888886 445554 457778899999998765 666653 46788899999999885 6777765 68889999
Q ss_pred ceeeccCCch
Q 045152 498 KELGMEGSPL 507 (533)
Q Consensus 498 ~~L~~~~c~~ 507 (533)
++|++++|..
T Consensus 127 ~~L~l~~n~l 136 (276)
T 2z62_A 127 KELNVAHNLI 136 (276)
T ss_dssp CEEECCSSCC
T ss_pred CEEECcCCcc
Confidence 9999988763
No 138
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.61 E-value=6.8e-05 Score=74.57 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=58.1
Q ss_pred ccccceEEEeecCCcccC-CccccccCccceeecccCCCCCCCCCccC-CCCCCCcceEEeccCCCCCCCCc--CCCCCC
Q 045152 420 MPCLSVLRVYLCPKLKVL-PDYLLQTTTLQKLRILQCPSMEELPILED-HIFLPRLSSLRIEYCPKLKLLPD--SLLQIT 495 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~~-~~~l~~L~~L~l~~C~~l~~lP~--~~~~l~ 495 (533)
++.|++|.++++ .+..+ |..+..+++|++|+++++. +..+| .. ++.+++|++|+++++ .+..+|. .+.+++
T Consensus 75 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 75 CVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLS--SSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLT 149 (353)
T ss_dssp CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCC--HHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCT
T ss_pred CCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCC--HhHhCCCccCCEEECCCC-CCcccCchhhhccCC
Confidence 567777777765 34444 4556777788888887654 66676 33 677888888888874 6777876 677788
Q ss_pred CcceeeccCCc
Q 045152 496 TLKELGMEGSP 506 (533)
Q Consensus 496 ~L~~L~~~~c~ 506 (533)
+|++|++++|.
T Consensus 150 ~L~~L~l~~n~ 160 (353)
T 2z80_A 150 KLQILRVGNMD 160 (353)
T ss_dssp TCCEEEEEESS
T ss_pred CCcEEECCCCc
Confidence 88888888774
No 139
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.61 E-value=5.1e-05 Score=81.35 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=60.4
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCC-CCccCCCCCCCcceEEeccCCCCCCCCcCCCCCC-Cc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEEL-PILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQIT-TL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l-p~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~-~L 497 (533)
++.|+.|++++|.--...|..+..+++|++|+++++. +..+ | ..++.+++|++|+|++| ++..+|+.+..++ +|
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L 547 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDS--SHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSL 547 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCEEG--GGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTC
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc-CCCcCH--HHccCCCcCCEEECCCC-cCcccCHhHhhhcccC
Confidence 4567777777765444456667777788888887765 5554 4 56777888888888885 5778888777776 58
Q ss_pred ceeeccCCch
Q 045152 498 KELGMEGSPL 507 (533)
Q Consensus 498 ~~L~~~~c~~ 507 (533)
++|++++||.
T Consensus 548 ~~l~l~~N~~ 557 (606)
T 3vq2_A 548 AFFNLTNNSV 557 (606)
T ss_dssp CEEECCSCCC
T ss_pred cEEEccCCCc
Confidence 8888887764
No 140
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.60 E-value=9.1e-05 Score=73.98 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=49.2
Q ss_pred ccccceEEEeecCCcccCCc-cccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCC----CCC
Q 045152 420 MPCLSVLRVYLCPKLKVLPD-YLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSL----LQI 494 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~----~~l 494 (533)
++.|++|+++++ .+..+|. .+..+.+|++|+|+++. +..++. ..+..+++|++|+|++ .+|..+|..+ .++
T Consensus 87 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l 162 (361)
T 2xot_A 87 VPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDR-NAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKL 162 (361)
T ss_dssp CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCS-SCCCSCCGGGTC----C
T ss_pred CCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCc-ccEECH-HHhCCcccCCEEECCC-CcCCeeCHHHhcCcccC
Confidence 456667776663 3455543 35566677777776544 555432 4566677777777766 4666676554 456
Q ss_pred CCcceeeccCCc
Q 045152 495 TTLKELGMEGSP 506 (533)
Q Consensus 495 ~~L~~L~~~~c~ 506 (533)
++|++|+++++.
T Consensus 163 ~~L~~L~L~~N~ 174 (361)
T 2xot_A 163 PKLMLLDLSSNK 174 (361)
T ss_dssp TTCCEEECCSSC
T ss_pred CcCCEEECCCCC
Confidence 677777666653
No 141
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.60 E-value=7.7e-05 Score=72.76 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=67.4
Q ss_pred cccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcc
Q 045152 419 IMPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLK 498 (533)
Q Consensus 419 ilp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~ 498 (533)
-++.|+.|.+++|. +..+|. +..+++|++|+++++. +..+| .++.+++|++|++++| .+..+|+ +.++++|+
T Consensus 105 ~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~ 176 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNIS---PLAGLTNLQYLSIGNA-QVSDLTP-LANLSKLT 176 (308)
T ss_dssp TCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCG---GGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred CCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCc---cccCCCCccEEEccCC-cCCCChh-hcCCCCCC
Confidence 36789999999854 566664 7889999999999875 77777 4788999999999996 7888887 88999999
Q ss_pred eeeccCCch
Q 045152 499 ELGMEGSPL 507 (533)
Q Consensus 499 ~L~~~~c~~ 507 (533)
+|++++|..
T Consensus 177 ~L~l~~n~l 185 (308)
T 1h6u_A 177 TLKADDNKI 185 (308)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcc
Confidence 999998863
No 142
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0011 Score=67.19 Aligned_cols=178 Identities=16% Similarity=0.067 Sum_probs=96.8
Q ss_pred ceeechhhHHHHHHHHhC----CC---ccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 183 EVCGRVEEKNELLSKLLC----ES---SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
++.|-++.+++|.+.+.- .+ .-+-..++-|.++|++|.|||+||+.+.+. ....| +.+..+.-.
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~---- 280 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELV---- 280 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC----
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhh----
Confidence 578888888888775421 00 001245678899999999999999999873 32222 233322111
Q ss_pred HHHHHHHHhCCCCCCCccHHH-HHHHHHHHhCCceEEEEEeCCCCCCc------cc--------cchhhhcccC--CCCC
Q 045152 256 VAKAIIEGLGVSASGLSEFES-LMKQIQEYITRKKFFLVLDDVWDGDY------KK--------WNPFFSCLKN--GHHE 318 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~-l~~~l~~~l~~kr~LlVLDdv~~~~~------~~--------~~~l~~~l~~--~~~g 318 (533)
.. .....+. +...+...-...+++|++|+++..-. .. ...++..+.. ...+
T Consensus 281 ----------sk--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 281 ----------QK--YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp ----------CC--SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred ----------cc--cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 00 0111122 22222223345789999999964210 00 0111222211 2234
Q ss_pred ceEEEEecchHHHh-----hhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc
Q 045152 319 SKILITTRDRSVAL-----QLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL 386 (533)
Q Consensus 319 s~IiiTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 386 (533)
..||.||..+.... .-.....+.++..+.++-.++|+.+.- .......-++ ..|++.|.|.--
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~-~~~l~~dvdl----~~LA~~T~GfSG 416 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSK-SMSVERGIRW----ELISRLCPNSTG 416 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHT-TSCBCSSCCH----HHHHHHCCSCCH
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhc-CCCCCCCCCH----HHHHHHCCCCCH
Confidence 45566776543321 112366789999999999999987653 1111112223 567788888653
No 143
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.60 E-value=9.2e-05 Score=76.07 Aligned_cols=83 Identities=19% Similarity=0.329 Sum_probs=64.5
Q ss_pred ccccceEEEeecCCcccCCc-cccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPD-YLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~ 498 (533)
++.|++|.++++ .+..+|. .+..+++|++|+++++..+..+|. ..+..+++|++|+|++| ++..+| .+.++++|+
T Consensus 135 l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~ 210 (440)
T 3zyj_A 135 LSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLD 210 (440)
T ss_dssp CSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTS-CCSSCC-CCTTCSSCC
T ss_pred cccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCC-cCcccc-ccCCCcccC
Confidence 567888888774 3555554 466788888888888888888774 35778899999999885 788888 488889999
Q ss_pred eeeccCCc
Q 045152 499 ELGMEGSP 506 (533)
Q Consensus 499 ~L~~~~c~ 506 (533)
+|++++|.
T Consensus 211 ~L~Ls~N~ 218 (440)
T 3zyj_A 211 ELDLSGNH 218 (440)
T ss_dssp EEECTTSC
T ss_pred EEECCCCc
Confidence 99998885
No 144
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.60 E-value=9.5e-05 Score=76.14 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=63.6
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L~ 498 (533)
++.|++|++++|.--...|..+..+++|++|+++++. +..++. ..++.+++|++|+|++ .+++.+|+. +..+++|+
T Consensus 322 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGD-QSFLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCC
T ss_pred cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc-ccccCh-hhccccccccEEECCC-CccccCCHhHhccCCccc
Confidence 5678888888764433335667778888888888775 666532 5788899999999988 478888864 47889999
Q ss_pred eeeccCCch
Q 045152 499 ELGMEGSPL 507 (533)
Q Consensus 499 ~L~~~~c~~ 507 (533)
+|++++||.
T Consensus 399 ~L~l~~N~l 407 (455)
T 3v47_A 399 KIWLHTNPW 407 (455)
T ss_dssp EEECCSSCB
T ss_pred EEEccCCCc
Confidence 999987763
No 145
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.59 E-value=8.9e-05 Score=73.39 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=65.3
Q ss_pred cccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcc
Q 045152 419 IMPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLK 498 (533)
Q Consensus 419 ilp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~ 498 (533)
-++.|++|.+++| .+..+|. +..+++|++|++++|..+..++ .+..+++|++|++++| .+..+|. +.++++|+
T Consensus 108 ~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~ 180 (347)
T 4fmz_A 108 NLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTES-KVKDVTP-IANLTDLY 180 (347)
T ss_dssp TCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCG---GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCS
T ss_pred CCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCccccc---chhhCCCCcEEEecCC-CcCCchh-hccCCCCC
Confidence 3678999998874 4566665 7788999999999888777766 5788899999999986 5777775 88899999
Q ss_pred eeeccCCc
Q 045152 499 ELGMEGSP 506 (533)
Q Consensus 499 ~L~~~~c~ 506 (533)
+|++++|.
T Consensus 181 ~L~l~~n~ 188 (347)
T 4fmz_A 181 SLSLNYNQ 188 (347)
T ss_dssp EEECTTSC
T ss_pred EEEccCCc
Confidence 99998886
No 146
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.58 E-value=0.00012 Score=71.10 Aligned_cols=86 Identities=16% Similarity=0.156 Sum_probs=66.0
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCC-CCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQI-TTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l-~~L~ 498 (533)
++.|++|.++++.--...|..+..+++|++|+++++. +..+|. ..+..+++|++|++++|.--...|..+..+ ++|+
T Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDT-FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251 (306)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCS-GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccCh-hhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence 6789999998865444446778888999999999766 777763 357788999999999974444456678887 4899
Q ss_pred eeeccCCch
Q 045152 499 ELGMEGSPL 507 (533)
Q Consensus 499 ~L~~~~c~~ 507 (533)
+|++++++.
T Consensus 252 ~L~L~~N~~ 260 (306)
T 2z66_A 252 FLNLTQNDF 260 (306)
T ss_dssp EEECTTCCE
T ss_pred EEEccCCCe
Confidence 999998873
No 147
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.58 E-value=9.6e-05 Score=76.10 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=41.4
Q ss_pred ccccceEEEeecCCcccC-CccccccCccceeecccCCCCCCC-CCccCCCCCCCcceEEeccCCCCCC-CCcC--CCCC
Q 045152 420 MPCLSVLRVYLCPKLKVL-PDYLLQTTTLQKLRILQCPSMEEL-PILEDHIFLPRLSSLRIEYCPKLKL-LPDS--LLQI 494 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~l-p~~~~~~~l~~L~~L~l~~C~~l~~-lP~~--~~~l 494 (533)
++.|++|.++++.....+ |..+..+++|++|+++++. +..+ | ..++.+++|++|++++| .+.. +|.. +.++
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l 128 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLET--GAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPL 128 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECT--TTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccCh--hhccCcccCCEEeCCCC-CCCccccCcccccCc
Confidence 345555555554333233 2334555555555555544 3333 3 34555566666666654 3332 3333 5556
Q ss_pred CCcceeeccCCc
Q 045152 495 TTLKELGMEGSP 506 (533)
Q Consensus 495 ~~L~~L~~~~c~ 506 (533)
++|++|++++|.
T Consensus 129 ~~L~~L~L~~n~ 140 (455)
T 3v47_A 129 TSLEMLVLRDNN 140 (455)
T ss_dssp TTCCEEECCSSB
T ss_pred ccCCEEECCCCc
Confidence 666666665554
No 148
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.57 E-value=5.9e-05 Score=79.25 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=63.1
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCC--CCcCCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKL--LPDSLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~--lP~~~~~l~~L 497 (533)
++.|++|+++++.--...|..+..+++|++|+++++. +..+| .. .+++|++|++++| .+.. +|..+.++++|
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp--~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L 117 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKIS--CH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQL 117 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEE--CC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTC
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecC--cc--ccCCccEEeccCC-ccccccchhhhccCCcc
Confidence 6678888888865433346778888899999998764 77888 33 6889999999885 5554 67888889999
Q ss_pred ceeeccCCch
Q 045152 498 KELGMEGSPL 507 (533)
Q Consensus 498 ~~L~~~~c~~ 507 (533)
++|++++|..
T Consensus 118 ~~L~L~~n~l 127 (520)
T 2z7x_B 118 KFLGLSTTHL 127 (520)
T ss_dssp CEEEEEESSC
T ss_pred eEEEecCccc
Confidence 9999888763
No 149
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.57 E-value=7.9e-05 Score=78.78 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=49.7
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCC--CCcCCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKL--LPDSLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~--lP~~~~~l~~L 497 (533)
++.|++|.++++.--...|..+..+++|++|+++++. +..+|. ..++.+++|++|++++| .+.. .|..+.++++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSS-SWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCH-HHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTC
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCH-HHhccCCCCcEEECCCC-cccccchhhhhhccCCc
Confidence 4456666666543222223456666667777766554 555552 22666777777777774 4553 35567777777
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++|.
T Consensus 126 ~~L~L~~n~ 134 (549)
T 2z81_A 126 QTLRIGNVE 134 (549)
T ss_dssp CEEEEEESS
T ss_pred cEEECCCCc
Confidence 777777665
No 150
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=9.9e-05 Score=82.08 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=71.1
Q ss_pred cccccceEEEeecCCcccCCccccccCccceeeccc------CCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCC
Q 045152 419 IMPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQ------CPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLL 492 (533)
Q Consensus 419 ilp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~------~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~ 492 (533)
-+|.|+.|++++| .+..+|..+..+++|+.|++++ +.-...+| ..++.+++|+.|+|++| .+..+|..+.
T Consensus 751 ~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip--~~l~~L~~L~~L~Ls~N-~L~~Ip~~l~ 826 (876)
T 4ecn_A 751 TLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP--TGITTCPSLIQLQIGSN-DIRKVDEKLT 826 (876)
T ss_dssp TCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC--TTGGGCSSCCEEECCSS-CCCBCCSCCC
T ss_pred cCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccCh--HHHhcCCCCCEEECCCC-CCCccCHhhc
Confidence 4689999999985 5566999999999999999986 33345678 68899999999999997 5699999876
Q ss_pred CCCCcceeeccCCchh
Q 045152 493 QITTLKELGMEGSPLL 508 (533)
Q Consensus 493 ~l~~L~~L~~~~c~~l 508 (533)
++|+.|++++|+..
T Consensus 827 --~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 827 --PQLYILDIADNPNI 840 (876)
T ss_dssp --SSSCEEECCSCTTC
T ss_pred --CCCCEEECCCCCCC
Confidence 69999999999853
No 151
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.57 E-value=0.00025 Score=73.14 Aligned_cols=97 Identities=12% Similarity=0.063 Sum_probs=59.9
Q ss_pred EEEEEeCCCCCCccccchhhhcccCCCCCceEEEEe----------c----chHHH-hhhCCCCeeeCCCCChHhhHHHH
Q 045152 290 FFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITT----------R----DRSVA-LQLGSIDIIPVKELAEEECWSLL 354 (533)
Q Consensus 290 ~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTt----------R----~~~v~-~~~~~~~~~~l~~L~~~~~~~Lf 354 (533)
-++++|+++..+.+..+.|...+...... .+|+.| . ...+. ........+++.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999877766777777776654444 344343 2 11111 12223445799999999999999
Q ss_pred HHhhccCCCccccccchHHHHHHHhHh-CCCcchhHHH
Q 045152 355 ERLAFFRRSVDDHEKLEPIGRKIAHKC-KGLPLAAKVI 391 (533)
Q Consensus 355 ~~~a~~~~~~~~~~~l~~~~~~I~~~c-~GlPLai~~~ 391 (533)
...+-... . .--.+....|++.+ +|.|..+..+
T Consensus 376 ~~~~~~~~-~---~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEG-I---NISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHT-C---CBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhC-C---CCCHHHHHHHHHHccCCCHHHHHHH
Confidence 87753111 1 11234567788888 8888765543
No 152
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.56 E-value=0.00011 Score=82.26 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=56.4
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCC--cCCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLP--DSLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP--~~~~~l~~L 497 (533)
++.|++|.+++|.--...|..+..+++|++|++++|.--..+|....++.|++|++|+|++| .+..++ +.+.++++|
T Consensus 72 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSC
T ss_pred CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCC
Confidence 45677777776544344466777777777777777652223452122777888888888885 455543 467888888
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++|.
T Consensus 151 ~~L~Ls~N~ 159 (844)
T 3j0a_A 151 KSIDFSSNQ 159 (844)
T ss_dssp CEEEEESSC
T ss_pred CEEECCCCc
Confidence 888887774
No 153
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.56 E-value=7.8e-05 Score=82.18 Aligned_cols=156 Identities=16% Similarity=0.263 Sum_probs=88.6
Q ss_pred CceeechhhHHHHHHHHhCCCc---cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESS---EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 258 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 258 (533)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+.+. ....-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 4689999988888887754321 01233457999999999999999999863 22222334455544321100
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCC-----------CCCceEEEEecc
Q 045152 259 AIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNG-----------HHESKILITTRD 327 (533)
Q Consensus 259 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IiiTtR~ 327 (533)
. .....+...++. ...-+|+||++..........|...+..+ ....+||+||..
T Consensus 565 ----------~--~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ----------S--TSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ----------C--CC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ----------c--cccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 001111112221 23348999999776655555555555431 234678888873
Q ss_pred -----h----HHHhhh-----CC-CCeeeCCCCChHhhHHHHHHhh
Q 045152 328 -----R----SVALQL-----GS-IDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 328 -----~----~v~~~~-----~~-~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
. .+...+ .. ...+.+.+++.++...++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 111111 11 3578999999999888887654
No 154
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.55 E-value=0.00012 Score=69.74 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=58.6
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|+.|.++++ .+..+|. +..+++|++|+++++. +..+|. +.. ++|++|++++| .+..+| .+.++++|++
T Consensus 62 l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~---~~~-~~L~~L~L~~N-~l~~~~-~l~~l~~L~~ 132 (263)
T 1xeu_A 62 FTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNR-LKNLNG---IPS-ACLSRLFLDNN-ELRDTD-SLIHLKNLEI 132 (263)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC-CSCCTT---CCC-SSCCEEECCSS-CCSBSG-GGTTCTTCCE
T ss_pred CCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCc-cCCcCc---ccc-CcccEEEccCC-ccCCCh-hhcCcccccE
Confidence 567888888774 5566666 7778888888888664 777772 333 88888888885 777776 5888899999
Q ss_pred eeccCCc
Q 045152 500 LGMEGSP 506 (533)
Q Consensus 500 L~~~~c~ 506 (533)
|++++|.
T Consensus 133 L~Ls~N~ 139 (263)
T 1xeu_A 133 LSIRNNK 139 (263)
T ss_dssp EECTTSC
T ss_pred EECCCCc
Confidence 9988875
No 155
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.55 E-value=0.00012 Score=75.07 Aligned_cols=81 Identities=16% Similarity=0.304 Sum_probs=37.0
Q ss_pred cccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCC-cCCCCCCCcce
Q 045152 421 PCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLP-DSLLQITTLKE 499 (533)
Q Consensus 421 p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP-~~~~~l~~L~~ 499 (533)
+.|++|.+++| .+..+|. +..+.+|+.|+++++. +..++. ..+..+++|++|+|+++ ++..++ ..+.++++|++
T Consensus 185 ~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 185 SNLRYLNLAMC-NLREIPN-LTPLIKLDELDLSGNH-LSAIRP-GSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVE 259 (440)
T ss_dssp SSCCEEECTTS-CCSSCCC-CTTCSSCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCE
T ss_pred cccCeecCCCC-cCccccc-cCCCcccCEEECCCCc-cCccCh-hhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCE
Confidence 34444444442 3334432 3444445555554432 333321 34445555555555553 343332 34555566666
Q ss_pred eeccCCc
Q 045152 500 LGMEGSP 506 (533)
Q Consensus 500 L~~~~c~ 506 (533)
|++++|.
T Consensus 260 L~L~~N~ 266 (440)
T 3zyj_A 260 INLAHNN 266 (440)
T ss_dssp EECTTSC
T ss_pred EECCCCC
Confidence 6665553
No 156
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.54 E-value=0.00015 Score=71.46 Aligned_cols=82 Identities=23% Similarity=0.316 Sum_probs=54.3
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L~ 498 (533)
++.|++|.+++|.--...|..+..+++|++|+++++. +..+| ..+. ++|++|+++++ .+..+|+. +.++++|+
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~--~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIP--PNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCC--SSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCC
T ss_pred CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccC--cccc--ccCCEEECCCC-ccCccCHhHhCCCccCC
Confidence 5667777777754333335667777777777777654 66777 3443 67777777773 56666653 66777777
Q ss_pred eeeccCCch
Q 045152 499 ELGMEGSPL 507 (533)
Q Consensus 499 ~L~~~~c~~ 507 (533)
+|++++|..
T Consensus 151 ~L~l~~n~l 159 (332)
T 2ft3_A 151 CIEMGGNPL 159 (332)
T ss_dssp EEECCSCCC
T ss_pred EEECCCCcc
Confidence 777777654
No 157
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.54 E-value=0.00011 Score=78.68 Aligned_cols=77 Identities=29% Similarity=0.417 Sum_probs=66.4
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|+.|.+++| .+..+| ..+++|++|+++++ .+..+| . .+++|++|+|++| +|..+|+.+.++++|++
T Consensus 220 ~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp--~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLP--M---LPSGLLSLSVYRN-QLTRLPESLIHLSSETT 288 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCC--C---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCE
T ss_pred CCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCC--c---ccccCcEEeCCCC-CCCcCCHHHhhccccCE
Confidence 478999999885 667788 34689999999987 488888 3 5799999999996 89999999999999999
Q ss_pred eeccCCch
Q 045152 500 LGMEGSPL 507 (533)
Q Consensus 500 L~~~~c~~ 507 (533)
|++++|+.
T Consensus 289 L~L~~N~l 296 (622)
T 3g06_A 289 VNLEGNPL 296 (622)
T ss_dssp EECCSCCC
T ss_pred EEecCCCC
Confidence 99999984
No 158
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.53 E-value=0.00013 Score=81.62 Aligned_cols=84 Identities=15% Similarity=0.174 Sum_probs=57.4
Q ss_pred ccccceEEEeecCCcccC-CccccccCccceeecccCCCCCCC-CCccCCCCCCCcceEEeccCCCCCCCCcC--CCCCC
Q 045152 420 MPCLSVLRVYLCPKLKVL-PDYLLQTTTLQKLRILQCPSMEEL-PILEDHIFLPRLSSLRIEYCPKLKLLPDS--LLQIT 495 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~l-p~~~~~~~l~~L~~L~l~~C~~l~~lP~~--~~~l~ 495 (533)
++.|++|++++|.....+ |..+..+++|++|+++++. +..+ | ..++.+++|++|+|++|.--..+|+. +.+++
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHP--DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECT--TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCH--hHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 456777777776555555 5567777777777777665 5544 4 56777888888888876333335654 77788
Q ss_pred CcceeeccCCc
Q 045152 496 TLKELGMEGSP 506 (533)
Q Consensus 496 ~L~~L~~~~c~ 506 (533)
+|++|++++|.
T Consensus 124 ~L~~L~Ls~N~ 134 (844)
T 3j0a_A 124 ALTRLDLSKNQ 134 (844)
T ss_dssp SCCEEEEESCC
T ss_pred CCCEEECCCCc
Confidence 88888887775
No 159
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.53 E-value=9.9e-05 Score=71.34 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=66.0
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|+.|++++| .+..+ ..+..+++|++|+++++. +..++ + +..+++|++|++++| .+..+|. +.++++|++
T Consensus 133 l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~ 204 (291)
T 1h6t_A 133 LPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQ-ISDIV--P-LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDV 204 (291)
T ss_dssp CTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSC-CCCCG--G-GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSE
T ss_pred CCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCCc-cccch--h-hcCCCccCEEECCCC-cCCCChh-hccCCCCCE
Confidence 678999999885 45555 567888999999999775 77777 3 788999999999995 8888885 889999999
Q ss_pred eeccCCch
Q 045152 500 LGMEGSPL 507 (533)
Q Consensus 500 L~~~~c~~ 507 (533)
|++++|+.
T Consensus 205 L~l~~n~i 212 (291)
T 1h6t_A 205 LELFSQEC 212 (291)
T ss_dssp EEEEEEEE
T ss_pred EECcCCcc
Confidence 99998864
No 160
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.53 E-value=0.00012 Score=69.63 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=49.7
Q ss_pred cccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCccee
Q 045152 421 PCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKEL 500 (533)
Q Consensus 421 p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~L 500 (533)
+.|+.|.+++| .+..+| .+..+++|++|+++++. +..+| .++.+++|++|++++| .+..+ +.+..+++|++|
T Consensus 106 ~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~---~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L 177 (263)
T 1xeu_A 106 ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNK-LKSIV---MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWI 177 (263)
T ss_dssp SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSC-CCBCG---GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEE
T ss_pred CcccEEEccCC-ccCCCh-hhcCcccccEEECCCCc-CCCCh---HHccCCCCCEEECCCC-cCcch-HHhccCCCCCEE
Confidence 56666666664 344444 45666777777777554 55555 4566777777777773 56666 456677777777
Q ss_pred eccCCc
Q 045152 501 GMEGSP 506 (533)
Q Consensus 501 ~~~~c~ 506 (533)
++++|+
T Consensus 178 ~l~~N~ 183 (263)
T 1xeu_A 178 DLTGQK 183 (263)
T ss_dssp EEEEEE
T ss_pred eCCCCc
Confidence 777665
No 161
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.52 E-value=0.00011 Score=71.11 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=41.9
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|++|.++++ .+..+|. +..+++|++|+++++. +..+| .+..+++|++|++++| .+..+| .+.++++|++
T Consensus 89 l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n~-i~~~~---~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~ 160 (291)
T 1h6t_A 89 LKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHNG-ISDIN---GLVHLPQLESLYLGNN-KITDIT-VLSRLTKLDT 160 (291)
T ss_dssp CTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTSC-CCCCG---GGGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSE
T ss_pred CCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCCc-CCCCh---hhcCCCCCCEEEccCC-cCCcch-hhccCCCCCE
Confidence 344555555442 2333332 4455555555555443 44443 4555666666666663 555553 5666666666
Q ss_pred eeccCCc
Q 045152 500 LGMEGSP 506 (533)
Q Consensus 500 L~~~~c~ 506 (533)
|++++|.
T Consensus 161 L~L~~N~ 167 (291)
T 1h6t_A 161 LSLEDNQ 167 (291)
T ss_dssp EECCSSC
T ss_pred EEccCCc
Confidence 6666664
No 162
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.52 E-value=1.4e-05 Score=78.87 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=63.1
Q ss_pred cc-ccceEEEeecC-Cc--ccCCccccccCccceeecccCCCCC-CCCCccCCCCCCCcceEEeccCCCCCCCCc---CC
Q 045152 420 MP-CLSVLRVYLCP-KL--KVLPDYLLQTTTLQKLRILQCPSME-ELPILEDHIFLPRLSSLRIEYCPKLKLLPD---SL 491 (533)
Q Consensus 420 lp-~L~~L~l~~c~-~l--~~lp~~l~~l~~L~~L~l~~~~~l~-~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~---~~ 491 (533)
+| .|++|.+++|. .+ ..+|..+..+++|++|++++|..+. ..+ ..+..+++|++|++++|..+ .|. .+
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~l~~l~~L~~L~l~~~~~~--~~~~~~~l 268 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF--QEFFQLNYLQHLSLSRCYDI--IPETLLEL 268 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG--GGGGGCTTCCEEECTTCTTC--CGGGGGGG
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH--HHHhCCCCCCEeeCCCCCCC--CHHHHHHH
Confidence 67 89999998875 34 4566666778999999999888554 344 47778899999999999733 222 47
Q ss_pred CCCCCcceeeccCC
Q 045152 492 LQITTLKELGMEGS 505 (533)
Q Consensus 492 ~~l~~L~~L~~~~c 505 (533)
.++++|++|++++|
T Consensus 269 ~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 269 GEIPTLKTLQVFGI 282 (336)
T ss_dssp GGCTTCCEEECTTS
T ss_pred hcCCCCCEEeccCc
Confidence 78999999999988
No 163
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.52 E-value=0.0001 Score=71.61 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=64.5
Q ss_pred ccccceEEEeecCCcc-cCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCc-CCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLK-VLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPD-SLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~-~~~~l~~L 497 (533)
++.|++|.++++..-. .+|..+..+++|++|+++++. +..++. ..+..+++|++|++++| .+..+|. .+.++++|
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 225 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSL 225 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTC
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCH-HHhcCCCCCCEEECCCC-ccCccChhhccCcccC
Confidence 5678888887754333 367788888899999998765 666642 56778899999999885 6777764 67788999
Q ss_pred ceeeccCCch
Q 045152 498 KELGMEGSPL 507 (533)
Q Consensus 498 ~~L~~~~c~~ 507 (533)
++|++++|+.
T Consensus 226 ~~L~L~~N~l 235 (306)
T 2z66_A 226 QVLDYSLNHI 235 (306)
T ss_dssp CEEECTTSCC
T ss_pred CEeECCCCCC
Confidence 9999988864
No 164
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.52 E-value=0.00014 Score=77.26 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=63.2
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L~ 498 (533)
++.|+.|.+++|.--...|..+. ++|++|+++++ .+..+| ..+..+++|++|++++ .++..+|+. +..+++|+
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip--~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIP--KDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQ 500 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCC--TTTTSSCCCSEEECCS-SCCCCCCTTSTTTCTTCC
T ss_pred cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccC--hhhcCCCCCCEEECCC-CCCCCCCHHHHhcCCCCC
Confidence 45666777766544344444333 68899999877 488898 6777899999999999 478999987 88999999
Q ss_pred eeeccCCch
Q 045152 499 ELGMEGSPL 507 (533)
Q Consensus 499 ~L~~~~c~~ 507 (533)
+|+++++|.
T Consensus 501 ~L~l~~N~~ 509 (562)
T 3a79_B 501 YIWLHDNPW 509 (562)
T ss_dssp CEECCSCCB
T ss_pred EEEecCCCc
Confidence 999998873
No 165
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.51 E-value=0.00083 Score=63.39 Aligned_cols=184 Identities=16% Similarity=0.041 Sum_probs=92.5
Q ss_pred CceeechhhHHHHHHHHh---CCCcc---CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLL---CESSE---QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~---~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
.+++|.+..++.+.+.+. ....- +.....-+.|+|++|+||||||+.+.+. .... .+.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH---
Confidence 468999888776665432 11100 0112345889999999999999999863 2222 23333221110
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCcc--------------ccchhhhcccC--CCCCc
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYK--------------KWNPFFSCLKN--GHHES 319 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~--------------~~~~l~~~l~~--~~~gs 319 (533)
.. . ......+...+.......+.++++|+++..... ....+...+.. ...+.
T Consensus 84 -------~~----~-~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 -------MF----V-GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -------SC----C-CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -------Hh----h-hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 00 0 011222333344444456789999998431110 01112222211 22345
Q ss_pred eEEEEecchHHH-hhh-C---CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCC-CcchhHH
Q 045152 320 KILITTRDRSVA-LQL-G---SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKG-LPLAAKV 390 (533)
Q Consensus 320 ~IiiTtR~~~v~-~~~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~ 390 (533)
.||.||...... ... . ....+.++..+.++-.+++....-. .. ..++ .....++..+.| .+--+..
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~--~~-l~~~--~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR--VP-LAPD--IDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT--SC-BCTT--CCHHHHHHTCTTCCHHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc--CC-CCcc--ccHHHHHHHcCCCCHHHHHH
Confidence 566677654321 111 1 1346778888888888888766521 11 1111 113456777888 6654443
No 166
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.51 E-value=0.00048 Score=67.93 Aligned_cols=175 Identities=19% Similarity=0.215 Sum_probs=91.5
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 262 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 262 (533)
.++|.+..++.+...+..... .......+.|+|++|+||||||+.+.+. ....|. ....+-....
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~sg~~~~~~--------- 90 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTSGPVLVKQ--------- 90 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEETTTCCSH---------
T ss_pred HccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEechHhcCH---------
Confidence 578887777776666532210 1123467899999999999999999873 222211 1111100011
Q ss_pred HhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCC------------------CCceEE-E
Q 045152 263 GLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGH------------------HESKIL-I 323 (533)
Q Consensus 263 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~------------------~gs~Ii-i 323 (533)
..+...+ ..+. ++-++++|++........+.+...+.... +...++ .
T Consensus 91 ------------~~l~~~~-~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a 156 (334)
T 1in4_A 91 ------------GDMAAIL-TSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA 156 (334)
T ss_dssp ------------HHHHHHH-HHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEE
T ss_pred ------------HHHHHHH-HHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe
Confidence 1111111 1122 33467788885543222222322111110 011122 3
Q ss_pred EecchHHHhhhCC--CCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcchhHH
Q 045152 324 TTRDRSVALQLGS--IDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKV 390 (533)
Q Consensus 324 TtR~~~v~~~~~~--~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 390 (533)
|++...+...+.. ...+.+++.+.++..+++.+.+-... ..--.+.+..|++.+.|.|..+..
T Consensus 157 t~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~----~~~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 157 TTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD----VEIEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT----CCBCHHHHHHHHHTSTTCHHHHHH
T ss_pred cCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC----CCcCHHHHHHHHHhcCCChHHHHH
Confidence 4443333222211 23578999999999999988763111 112245678899999999976543
No 167
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.51 E-value=5.1e-05 Score=72.33 Aligned_cols=180 Identities=16% Similarity=0.095 Sum_probs=89.4
Q ss_pred CceeechhhHHHHHHHHhCCCcc------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSE------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
.+++|.+..++.+.+.+..-... +......+.|+|++|+|||+||+.+.+. ....| +.+..+.-.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~---- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPF---FSMGGSSFI---- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCC---CCCCSCTTT----
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEechHHHH----
Confidence 46899998888877765310000 0012234789999999999999999874 22222 111111100
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc---------------cccchhhhcccCC---CC
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDY---------------KKWNPFFSCLKNG---HH 317 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~---------------~~~~~l~~~l~~~---~~ 317 (533)
..+.+... ..... .+......++.+|+|||++.... .....+...+... ..
T Consensus 82 ------~~~~~~~~--~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 82 ------EMFVGLGA--SRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp ------TSCSSSCS--SSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred ------HhhcchHH--HHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 00111000 01111 11222224567999999954311 1122233333211 12
Q ss_pred CceEEEEecchHHHh--hhC---CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc
Q 045152 318 ESKILITTRDRSVAL--QLG---SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL 386 (533)
Q Consensus 318 gs~IiiTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 386 (533)
...||.||....... ... ....+.++..+.++-.+++...+. .........+ ..|++.+.|.|-
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~-~~~~~~~~~~----~~la~~~~g~~g 219 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK-GVKLANDVNL----QEVAKLTAGLAG 219 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS-SSCCCSSCCT----TTTTSSSCSSCH
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh-cCCCCCccCH----HHHHHHcCCCCH
Confidence 245666666543211 111 235678889999999999887653 1111111122 335666777654
No 168
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.51 E-value=0.00015 Score=75.26 Aligned_cols=83 Identities=22% Similarity=0.175 Sum_probs=52.0
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCC-CcCCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLL-PDSLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~l-P~~~~~l~~L 497 (533)
++.|++|.++++ .+..+|.. +..+++|++|+++++. +..++. ..+..+++|++|+++++ .+..+ |..+.++++|
T Consensus 79 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 79 LFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENK-IVILLD-YMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSL 154 (477)
T ss_dssp CTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTC
T ss_pred CccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCc-cccCCh-hHccccccCCEEECCCC-ccceeChhhccCCCCC
Confidence 456677777663 35555543 4566777777777654 444432 45666777777777774 44444 4567777778
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++|.
T Consensus 155 ~~L~l~~n~ 163 (477)
T 2id5_A 155 EQLTLEKCN 163 (477)
T ss_dssp CEEEEESCC
T ss_pred CEEECCCCc
Confidence 888777764
No 169
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00077 Score=67.63 Aligned_cols=180 Identities=16% Similarity=0.116 Sum_probs=97.0
Q ss_pred CceeechhhHHHHHHHHhCC----C---ccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHH
Q 045152 182 GEVCGRVEEKNELLSKLLCE----S---SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~----~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (533)
.++.|-++.+++|.+.+.-. + .-+-...+-|.++|++|.|||.||+.+.+. ....| +.++.+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~--- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELI--- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGC---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhh---
Confidence 35778888888887765321 0 001234678999999999999999999974 22222 222222111
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCc------cc--------cchhhhccc--CCCC
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQE-YITRKKFFLVLDDVWDGDY------KK--------WNPFFSCLK--NGHH 317 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdv~~~~~------~~--------~~~l~~~l~--~~~~ 317 (533)
. ....+.+.....+.. .-...+++|++|+++..-. .. ...++..+. ....
T Consensus 254 -----------s--k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 254 -----------Q--KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp -----------C--SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred -----------h--ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 0 011112222222322 2245689999999864210 00 111222221 2233
Q ss_pred CceEEEEecchHHHhh-h-C---CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcch
Q 045152 318 ESKILITTRDRSVALQ-L-G---SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLA 387 (533)
Q Consensus 318 gs~IiiTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 387 (533)
+..||.||..++.... + . ....+.+..-+.++-.++|+.+.- ........++ ..+++.+.|+--|
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~-~~~l~~dvdl----~~LA~~T~GfSGA 390 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTS-KMNLSEDVNL----ETLVTTKDDLSGA 390 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHT-TSCBCSCCCH----HHHHHHCCSCCHH
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhc-CCCCCCcCCH----HHHHHhCCCCCHH
Confidence 4556677766544321 1 1 145688888888888888887653 1111122233 5677788876533
No 170
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00023 Score=72.07 Aligned_cols=179 Identities=16% Similarity=0.140 Sum_probs=96.0
Q ss_pred CceeechhhHHHHHHHHhC----CC---ccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHH
Q 045152 182 GEVCGRVEEKNELLSKLLC----ES---SEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (533)
.++.|-++.+++|.+.+.. .+ .-+-..++-|.++|++|.|||+||+.+.+. ....| +.+..+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~--- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLV--- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhh---
Confidence 4688999988888776422 10 001245678999999999999999999973 22222 233322111
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCC-----C-ccc--------cchhhhcccC--CCC
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQEY-ITRKKFFLVLDDVWDG-----D-YKK--------WNPFFSCLKN--GHH 317 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdv~~~-----~-~~~--------~~~l~~~l~~--~~~ 317 (533)
.. .....+.....+... -...+++|++|+++.. + ... ...++..+.. ...
T Consensus 253 -----------~~--~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 253 -----------QM--YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp -----------SS--CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred -----------hc--ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 00 011112222222222 2346799999998431 0 000 1112222222 123
Q ss_pred CceEEEEecchHHHhh-h----CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcc
Q 045152 318 ESKILITTRDRSVALQ-L----GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPL 386 (533)
Q Consensus 318 gs~IiiTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 386 (533)
+..||.||..++.... + .....+.++..+.++-.++|+.+.-. ......-++ ..|++.+.|+--
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-~~~~~dvdl----~~lA~~t~G~sG 388 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK-MTTDDDINW----QELARSTDEFNG 388 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH-SCBCSCCCH----HHHHHHCSSCCH
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC-CCCCCcCCH----HHHHHhCCCCCH
Confidence 4455667776543221 1 12567889888988888888765531 111112223 567788887653
No 171
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.50 E-value=0.00016 Score=70.48 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=55.6
Q ss_pred ccccceEEEeecCCcccCCcccccc---CccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCC
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQT---TTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITT 496 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l---~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~ 496 (533)
++.|++|+++++.--...|..+..+ ++|++|+++++. +..+| ..+. ++|++|+|++ .+|..+|. +..+++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp--~~~~--~~L~~L~Ls~-N~l~~~~~-~~~l~~ 295 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVP--KGLP--AKLRVLDLSS-NRLNRAPQ-PDELPE 295 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCC--SCCC--SCCSCEECCS-CCCCSCCC-TTSCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchh--hhhc--CCCCEEECCC-CcCCCCch-hhhCCC
Confidence 4667788887754433336666555 578888887654 77777 4443 7888888877 46777764 667788
Q ss_pred cceeeccCCch
Q 045152 497 LKELGMEGSPL 507 (533)
Q Consensus 497 L~~L~~~~c~~ 507 (533)
|++|++++++.
T Consensus 296 L~~L~L~~N~l 306 (310)
T 4glp_A 296 VDNLTLDGNPF 306 (310)
T ss_dssp CSCEECSSTTT
T ss_pred ccEEECcCCCC
Confidence 88888877764
No 172
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.50 E-value=6.8e-06 Score=81.14 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=66.3
Q ss_pred ccccceEEEeecCCcc--cCCccccccCccceeecccCCCCCC--CCCccCCCCCC-CcceEEeccCC-CC--CCCCcCC
Q 045152 420 MPCLSVLRVYLCPKLK--VLPDYLLQTTTLQKLRILQCPSMEE--LPILEDHIFLP-RLSSLRIEYCP-KL--KLLPDSL 491 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~~~~l~~--lp~~~~~~~l~-~L~~L~l~~C~-~l--~~lP~~~ 491 (533)
+|.|++|.+++|..+. .+|..+..+++|++|++++|+.+.. +| ..+..++ +|++|+|++|. .+ ..+|..+
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--VAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH--HHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH--HHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 6788888888886665 3666677788889999988866664 45 4566788 89999998885 45 4577777
Q ss_pred CCCCCcceeeccCCchh
Q 045152 492 LQITTLKELGMEGSPLL 508 (533)
Q Consensus 492 ~~l~~L~~L~~~~c~~l 508 (533)
.++++|++|++++|..+
T Consensus 219 ~~~~~L~~L~l~~~~~l 235 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVML 235 (336)
T ss_dssp HHCTTCSEEECTTCTTC
T ss_pred hhCCCCCEEeCCCCCcC
Confidence 78889999999888743
No 173
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.50 E-value=0.00067 Score=69.81 Aligned_cols=179 Identities=16% Similarity=0.088 Sum_probs=94.8
Q ss_pred CceeechhhHHHHHHHHhCCCcc------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSE------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
.+++|.++.++++.+....-... +....+-+.|+|++|.|||+||+.+.+. .... .+.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH--
Confidence 36899988877776654211000 0112344889999999999999999873 2222 223333221110
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCcc--------------ccchhhhccc--CCCCCc
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYK--------------KWNPFFSCLK--NGHHES 319 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~--------------~~~~l~~~l~--~~~~gs 319 (533)
+ ...........+.......+.+|+||+++..... ....+...+. ....+.
T Consensus 89 --------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0 0011122233344444567889999999553110 1122222221 112355
Q ss_pred eEEEEecchHHHh--hhC---CCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCc
Q 045152 320 KILITTRDRSVAL--QLG---SIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLP 385 (533)
Q Consensus 320 ~IiiTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 385 (533)
.||.||..++... ... ....+.++..+.++-.+++..++... ......+ ...++..+.|+.
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~-~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK-PLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC-CCcchhh----HHHHHHhcCCCc
Confidence 6777777654322 111 23478888888888888887665311 1111111 245778888877
No 174
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.50 E-value=0.00013 Score=71.24 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=56.9
Q ss_pred ccccceEEEeecCCcccCC--ccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLP--DYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L 497 (533)
++.|++|+++++. +...+ ..+..+++|++|+++++. +..+| ..+. ++|++|++++ .+|+.+|. +..+++|
T Consensus 227 l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip--~~~~--~~L~~L~Ls~-N~l~~~p~-~~~l~~L 298 (312)
T 1wwl_A 227 RVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTG-LKQVP--KGLP--AKLSVLDLSY-NRLDRNPS-PDELPQV 298 (312)
T ss_dssp TCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSC-CSSCC--SSCC--SEEEEEECCS-SCCCSCCC-TTTSCEE
T ss_pred CCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCc-cChhh--hhcc--CCceEEECCC-CCCCCChh-HhhCCCC
Confidence 5678888887744 33332 334456788888888665 77777 4554 7888888888 47888876 7788888
Q ss_pred ceeeccCCch
Q 045152 498 KELGMEGSPL 507 (533)
Q Consensus 498 ~~L~~~~c~~ 507 (533)
++|++++++.
T Consensus 299 ~~L~L~~N~l 308 (312)
T 1wwl_A 299 GNLSLKGNPF 308 (312)
T ss_dssp EEEECTTCTT
T ss_pred CEEeccCCCC
Confidence 8888887763
No 175
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.50 E-value=0.0001 Score=73.27 Aligned_cols=90 Identities=22% Similarity=0.264 Sum_probs=63.6
Q ss_pred cccccccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCC-cCCC
Q 045152 415 ENISIMPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLP-DSLL 492 (533)
Q Consensus 415 ~~~~ilp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP-~~~~ 492 (533)
++.++.+.++.|++++ ..+..+|.. +..+++|++|+|+++.-++.+|. ..+..|++|..+.+.+|.+|..+| ..+.
T Consensus 24 iP~~l~~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~~N~l~~l~~~~f~ 101 (350)
T 4ay9_X 24 IPSDLPRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYINPEAFQ 101 (350)
T ss_dssp CCTTCCTTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECT-TSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred cCcCcCCCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh-hHhhcchhhhhhhcccCCcccccCchhhh
Confidence 3444555788888887 567788764 67788888888887775566663 345667777777666777788775 3467
Q ss_pred CCCCcceeeccCCc
Q 045152 493 QITTLKELGMEGSP 506 (533)
Q Consensus 493 ~l~~L~~L~~~~c~ 506 (533)
++++|++|++++|.
T Consensus 102 ~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 102 NLPNLQYLLISNTG 115 (350)
T ss_dssp CCTTCCEEEEEEEC
T ss_pred hccccccccccccc
Confidence 78888888877664
No 176
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.49 E-value=9.5e-05 Score=76.58 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=58.7
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|++|++++| .+..+|. +..+++|++|+++++. +..+| + ++.+++|++|++++| .+..+|+ +.++++|++
T Consensus 67 l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 67 LNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADIT--P-LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNR 138 (466)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSE
T ss_pred hcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCc-cccCh--h-hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCE
Confidence 667888888875 4566665 7778888888888765 66666 3 777888888888885 6777775 777888888
Q ss_pred eeccCCc
Q 045152 500 LGMEGSP 506 (533)
Q Consensus 500 L~~~~c~ 506 (533)
|++++|.
T Consensus 139 L~l~~n~ 145 (466)
T 1o6v_A 139 LELSSNT 145 (466)
T ss_dssp EEEEEEE
T ss_pred EECCCCc
Confidence 8887765
No 177
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.49 E-value=6.8e-05 Score=78.19 Aligned_cols=83 Identities=12% Similarity=0.121 Sum_probs=66.5
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|+.|++++|. +..+|.. ..+++|++|+++++. +..+| +.++.+++|+.|+|++ ..|..+|+.+..+++|++
T Consensus 168 l~~L~~L~Ls~N~-l~~~~~~-~~l~~L~~L~Ls~N~-l~~~~--~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~ 241 (487)
T 3oja_A 168 SDTLEHLNLQYNF-IYDVKGQ-VVFAKLKTLDLSSNK-LAFMG--PEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEH 241 (487)
T ss_dssp TTTCCEEECTTSC-CCEEECC-CCCTTCCEEECCSSC-CCEEC--GGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCE
T ss_pred CCcccEEecCCCc-ccccccc-ccCCCCCEEECCCCC-CCCCC--HhHcCCCCccEEEecC-CcCcccchhhccCCCCCE
Confidence 5788888888754 5555543 357889999998765 78888 5788899999999999 478889998999999999
Q ss_pred eeccCCchh
Q 045152 500 LGMEGSPLL 508 (533)
Q Consensus 500 L~~~~c~~l 508 (533)
|++++|+..
T Consensus 242 L~l~~N~l~ 250 (487)
T 3oja_A 242 FDLRGNGFH 250 (487)
T ss_dssp EECTTCCBC
T ss_pred EEcCCCCCc
Confidence 999988764
No 178
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.48 E-value=0.00013 Score=77.51 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=59.3
Q ss_pred ccccceEEEeecCCcccC-CccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCC--cCCCCCCC
Q 045152 420 MPCLSVLRVYLCPKLKVL-PDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLP--DSLLQITT 496 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP--~~~~~l~~ 496 (533)
++.|++|+++++ .+..+ |..+..+++|++|+++++. +..+| .. .+++|++|++++| ++..+| ..+.++++
T Consensus 75 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp--~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 75 LSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNR-LQNIS--CC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTK 147 (562)
T ss_dssp CTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSC-CCEEC--SC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTT
T ss_pred CCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCc-CCccC--cc--ccccCCEEECCCC-CccccCchHhhcccCc
Confidence 567788888775 34444 5667778888888888655 77777 33 6888888888885 566654 67888888
Q ss_pred cceeeccCCch
Q 045152 497 LKELGMEGSPL 507 (533)
Q Consensus 497 L~~L~~~~c~~ 507 (533)
|++|+++++..
T Consensus 148 L~~L~L~~n~l 158 (562)
T 3a79_B 148 LTFLGLSAAKF 158 (562)
T ss_dssp CCEEEEECSBC
T ss_pred ccEEecCCCcc
Confidence 88888887753
No 179
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.48 E-value=0.00017 Score=71.97 Aligned_cols=84 Identities=13% Similarity=0.132 Sum_probs=66.8
Q ss_pred cccccceEEEeecCCcccCC-ccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCC-CcCCCCCCC
Q 045152 419 IMPCLSVLRVYLCPKLKVLP-DYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLL-PDSLLQITT 496 (533)
Q Consensus 419 ilp~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~l-P~~~~~l~~ 496 (533)
-++.|++|.++++ .+..++ ..+..+++|++|+|+++. |..+|. ..+..+++|++|+|+++ ++..+ |..+.++++
T Consensus 62 ~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~ 137 (361)
T 2xot_A 62 RLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDE-FLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQ 137 (361)
T ss_dssp CCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred cccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCH-HHhCCCcCCCEEECCCC-cccEECHHHhCCccc
Confidence 3678899999884 556665 457888999999999755 888773 35788999999999994 67766 567889999
Q ss_pred cceeeccCCc
Q 045152 497 LKELGMEGSP 506 (533)
Q Consensus 497 L~~L~~~~c~ 506 (533)
|++|++++|.
T Consensus 138 L~~L~L~~N~ 147 (361)
T 2xot_A 138 LQKLYLSQNQ 147 (361)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCc
Confidence 9999998885
No 180
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.47 E-value=6.9e-05 Score=78.15 Aligned_cols=79 Identities=10% Similarity=0.055 Sum_probs=35.0
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCC-CCCCcCCCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKL-KLLPDSLLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l-~~lP~~~~~l~~L~ 498 (533)
++.|++|++++ ..+..+|..+..+++|++|+++++. +..+| ..++.+++|+.|++++|+-. ..+|..+..+++|+
T Consensus 190 l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp--~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 190 FAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNK-LVLIE--KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp CTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSC-CCEEC--TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred CCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCCc-Ccccc--hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence 34444454444 2334444444444455555554432 44444 34444445555555443222 13444444444444
Q ss_pred eeec
Q 045152 499 ELGM 502 (533)
Q Consensus 499 ~L~~ 502 (533)
.|++
T Consensus 266 ~l~~ 269 (487)
T 3oja_A 266 TVAK 269 (487)
T ss_dssp HHHH
T ss_pred EEec
Confidence 4444
No 181
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.47 E-value=0.00016 Score=76.75 Aligned_cols=83 Identities=28% Similarity=0.438 Sum_probs=49.8
Q ss_pred ccccceEEEeecCCc-ccCCccccccCccceeecccCCCCCCC-CCccCCCCCCCcceEEeccCCCCCCCCc-CCCCCCC
Q 045152 420 MPCLSVLRVYLCPKL-KVLPDYLLQTTTLQKLRILQCPSMEEL-PILEDHIFLPRLSSLRIEYCPKLKLLPD-SLLQITT 496 (533)
Q Consensus 420 lp~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~~~~l~~l-p~~~~~~~l~~L~~L~l~~C~~l~~lP~-~~~~l~~ 496 (533)
++.|++|.+++|... ..+|..+..+++|++|++++|. +..+ | ..++.+++|++|+|++| ++..+|+ .+.++++
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP--TAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTS 519 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT--TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCCh--hhhhcccCCCEEeCCCC-cCCCCCHHHhhcccC
Confidence 345555555554332 2456566666666666666654 4444 4 45666777777777775 5666554 3566777
Q ss_pred cceeeccCCc
Q 045152 497 LKELGMEGSP 506 (533)
Q Consensus 497 L~~L~~~~c~ 506 (533)
|++|++++||
T Consensus 520 L~~L~l~~N~ 529 (570)
T 2z63_A 520 LQKIWLHTNP 529 (570)
T ss_dssp CCEEECCSSC
T ss_pred CcEEEecCCc
Confidence 7777777665
No 182
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.47 E-value=2e-06 Score=78.19 Aligned_cols=82 Identities=23% Similarity=0.252 Sum_probs=61.7
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCc--CCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPD--SLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~--~~~~l~~L 497 (533)
++.|++|.+++| .+..+|..+..+++|++|+++++. +..+| .++.+++|++|++++| ++..+|. .+.++++|
T Consensus 69 l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~---~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L 142 (198)
T 1ds9_A 69 MENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQ-IASLS---GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKL 142 (198)
T ss_dssp HTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEE-CCCHH---HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTC
T ss_pred CCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCc-CCcCC---ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCC
Confidence 467788888774 456777766667788888888664 66666 5667888888888884 6777764 67888999
Q ss_pred ceeeccCCch
Q 045152 498 KELGMEGSPL 507 (533)
Q Consensus 498 ~~L~~~~c~~ 507 (533)
++|++++|+.
T Consensus 143 ~~L~l~~N~l 152 (198)
T 1ds9_A 143 EDLLLAGNPL 152 (198)
T ss_dssp SEEEECSCHH
T ss_pred CEEEecCCcc
Confidence 9999998874
No 183
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.46 E-value=0.00027 Score=69.39 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=38.3
Q ss_pred cccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCc-CCCCCCCcce
Q 045152 421 PCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPD-SLLQITTLKE 499 (533)
Q Consensus 421 p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~-~~~~l~~L~~ 499 (533)
+.|++|.++++.--...|..+..+++|++|+++++. +..+| ..+. ++|++|++++| .+..+|+ .+.++++|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~--~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELP--EKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCC--SSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCE
T ss_pred CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccC--hhhc--ccccEEECCCC-cccccCHhHhcCCccccE
Confidence 445555554432222224444455555555555433 44444 2222 45555555553 3444442 3556666666
Q ss_pred eeccCCc
Q 045152 500 LGMEGSP 506 (533)
Q Consensus 500 L~~~~c~ 506 (533)
|++++|.
T Consensus 150 L~l~~n~ 156 (330)
T 1xku_A 150 VELGTNP 156 (330)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 6666664
No 184
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.45 E-value=8.6e-05 Score=72.68 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=66.7
Q ss_pred ccccceEEEeecCCcccCCcccc-ccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLL-QTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~-~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~ 498 (533)
++.|++|.++++.--...|..+. .+++|++|+++++. +..+| ....+++|++|++++| ++..+|+.+..+++|+
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~ 217 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK---GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVT 217 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE---CCCCCTTCCEEECCSS-CCCEECGGGGGGTTCS
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccc---cccccccCCEEECCCC-cCCcchhhhcccCccc
Confidence 67889999988644333345553 67999999999876 77777 4446999999999995 8999999999999999
Q ss_pred eeeccCCch
Q 045152 499 ELGMEGSPL 507 (533)
Q Consensus 499 ~L~~~~c~~ 507 (533)
+|++++|..
T Consensus 218 ~L~L~~N~l 226 (317)
T 3o53_A 218 WISLRNNKL 226 (317)
T ss_dssp EEECTTSCC
T ss_pred EEECcCCcc
Confidence 999999864
No 185
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.45 E-value=0.00015 Score=77.61 Aligned_cols=79 Identities=24% Similarity=0.309 Sum_probs=52.1
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|+.|.++.| .+..+| .+..+++|+.|+|++|. +..+| .+..|++|+.|+|++| .|..+| .+.++++|+.
T Consensus 86 l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~---~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~ 157 (605)
T 1m9s_A 86 LKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNG-ISDIN---GLVHLPQLESLYLGNN-KITDIT-VLSRLTKLDT 157 (605)
T ss_dssp CTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSC-CCCCG---GGGGCTTCSEEECCSS-CCCCCG-GGGSCTTCSE
T ss_pred CCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCC-CCCCc---cccCCCccCEEECCCC-ccCCch-hhcccCCCCE
Confidence 556666666664 344444 45666777777777654 55554 5666777777777775 566663 6777778888
Q ss_pred eeccCCc
Q 045152 500 LGMEGSP 506 (533)
Q Consensus 500 L~~~~c~ 506 (533)
|++++|.
T Consensus 158 L~Ls~N~ 164 (605)
T 1m9s_A 158 LSLEDNQ 164 (605)
T ss_dssp EECCSSC
T ss_pred EECcCCc
Confidence 8877775
No 186
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.44 E-value=0.00015 Score=77.53 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=67.5
Q ss_pred cccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcc
Q 045152 419 IMPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLK 498 (533)
Q Consensus 419 ilp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~ 498 (533)
-++.|+.|.+++|. +..+| .+..+++|+.|+|++|. +..++ .++.|++|+.|+|++| .|..+|+ +..+++|+
T Consensus 107 ~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~---~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~ 178 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDIT---VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQ 178 (605)
T ss_dssp TCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCG---GGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred cCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCc-cCCch---hhcccCCCCEEECcCC-cCCCchh-hccCCCCC
Confidence 36789999999854 55554 57889999999999876 77665 7788999999999996 7888887 99999999
Q ss_pred eeeccCCc
Q 045152 499 ELGMEGSP 506 (533)
Q Consensus 499 ~L~~~~c~ 506 (533)
+|++++|.
T Consensus 179 ~L~Ls~N~ 186 (605)
T 1m9s_A 179 NLYLSKNH 186 (605)
T ss_dssp EEECCSSC
T ss_pred EEECcCCC
Confidence 99999986
No 187
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.41 E-value=0.00015 Score=76.66 Aligned_cols=86 Identities=21% Similarity=0.250 Sum_probs=70.1
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCC-cCCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLP-DSLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP-~~~~~l~~L 497 (533)
++.|++|+++++ .+..+|.. +..+++|++|+++++. +..++....++.+++|++|++++|..+..+| ..+.++++|
T Consensus 73 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 150 (549)
T 2z81_A 73 LGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150 (549)
T ss_dssp CTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred cccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence 678999999985 45566554 8889999999999876 6654322578899999999999988788888 579999999
Q ss_pred ceeeccCCch
Q 045152 498 KELGMEGSPL 507 (533)
Q Consensus 498 ~~L~~~~c~~ 507 (533)
++|++++|..
T Consensus 151 ~~L~L~~n~l 160 (549)
T 2z81_A 151 NELEIKALSL 160 (549)
T ss_dssp EEEEEEETTC
T ss_pred CeeeccCCcc
Confidence 9999998863
No 188
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.38 E-value=0.00021 Score=76.48 Aligned_cols=84 Identities=15% Similarity=0.116 Sum_probs=55.2
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCC-cCCCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLP-DSLLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP-~~~~~l~~L~ 498 (533)
++.|++|+++++.--...|..+..+++|++|+++++. +..++. ..++.+++|++|++++| .+..+| +.+..+++|+
T Consensus 80 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 156 (606)
T 3t6q_A 80 QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDF-IPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLK 156 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGG-SCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCC
T ss_pred ccccCeeeCCCCcccccChhhhcccccccEeeccccC-cccCCc-chhccCCcccEEECCCC-cccccCcccccCCcccC
Confidence 5567777777654444446666777777777777655 555532 45677788888888774 565552 3344478888
Q ss_pred eeeccCCc
Q 045152 499 ELGMEGSP 506 (533)
Q Consensus 499 ~L~~~~c~ 506 (533)
+|++++|.
T Consensus 157 ~L~L~~n~ 164 (606)
T 3t6q_A 157 VLDFQNNA 164 (606)
T ss_dssp EEECCSSC
T ss_pred EEEcccCc
Confidence 88887774
No 189
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.38 E-value=0.0003 Score=72.87 Aligned_cols=85 Identities=20% Similarity=0.183 Sum_probs=54.5
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|++|.++++.--...|..+..+++|++|+++++. +..+|. ..+..+++|++|+|++|.--...|..+.++++|++
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPL-GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCT-TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCc-ccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 4567777777653333335666777777777777654 666663 23566777777777775333334556777777777
Q ss_pred eeccCCc
Q 045152 500 LGMEGSP 506 (533)
Q Consensus 500 L~~~~c~ 506 (533)
|++++|.
T Consensus 133 L~l~~n~ 139 (477)
T 2id5_A 133 LEVGDND 139 (477)
T ss_dssp EEECCTT
T ss_pred EECCCCc
Confidence 7777664
No 190
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.37 E-value=0.00035 Score=75.93 Aligned_cols=84 Identities=19% Similarity=0.246 Sum_probs=49.4
Q ss_pred ccccceEEEeecCCcccCCc-cccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPD-YLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~ 498 (533)
++.|++|.++++ .+..+|. .+..+++|++|+++++. +..+|. ..++.+++|++|++++|.--...|..+.++++|+
T Consensus 72 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 72 LPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKN-NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCS-CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred ccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccCh-hHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence 456666666664 4555654 35666677777776554 555552 3466666777777766532223344566666666
Q ss_pred eeeccCCc
Q 045152 499 ELGMEGSP 506 (533)
Q Consensus 499 ~L~~~~c~ 506 (533)
+|++++|.
T Consensus 149 ~L~L~~n~ 156 (680)
T 1ziw_A 149 ELLLSNNK 156 (680)
T ss_dssp EEECCSSC
T ss_pred EEEccCCc
Confidence 66666653
No 191
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.37 E-value=0.00026 Score=76.88 Aligned_cols=85 Identities=16% Similarity=0.235 Sum_probs=69.8
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCC-cCCCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLP-DSLLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP-~~~~~l~~L~ 498 (533)
++.|++|.++++.--...|..+..+++|++|+++++. +..+|. ..++.+++|++|++++| ++..+| ..+.++++|+
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSD-KTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCC
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccCh-hhhccCCCCCEEECCCC-ccCccChhHccccCCCC
Confidence 5679999999865444446677889999999999875 888883 35889999999999996 677877 5799999999
Q ss_pred eeeccCCch
Q 045152 499 ELGMEGSPL 507 (533)
Q Consensus 499 ~L~~~~c~~ 507 (533)
+|++++|..
T Consensus 125 ~L~Ls~n~l 133 (680)
T 1ziw_A 125 TLDLSHNGL 133 (680)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcc
Confidence 999998853
No 192
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.37 E-value=0.00019 Score=76.03 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=72.0
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCC-CCCCCccCCCCCCCcceEEeccCCCCCCC-CcCCCCCCCc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSM-EELPILEDHIFLPRLSSLRIEYCPKLKLL-PDSLLQITTL 497 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l-~~lp~~~~~~~l~~L~~L~l~~C~~l~~l-P~~~~~l~~L 497 (533)
++.|++|.+++|..-...|..+..+++|++|++++|.-. ..+| ..++.+++|++|+|++| .+..+ |..+.++++|
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSL 496 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch--hhhhcccCCCEEECCCC-ccccCChhhhhcccCC
Confidence 678999999998776667888889999999999998733 2578 68999999999999997 45555 8899999999
Q ss_pred ceeeccCCc
Q 045152 498 KELGMEGSP 506 (533)
Q Consensus 498 ~~L~~~~c~ 506 (533)
++|++++|.
T Consensus 497 ~~L~l~~n~ 505 (570)
T 2z63_A 497 QVLNMASNQ 505 (570)
T ss_dssp CEEECCSSC
T ss_pred CEEeCCCCc
Confidence 999999986
No 193
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.37 E-value=5.5e-06 Score=75.28 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=26.2
Q ss_pred cccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccC
Q 045152 421 PCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYC 481 (533)
Q Consensus 421 p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C 481 (533)
|.|++|.+++| .+..+| .+..+++|++|+++++. +..+|.+..+..+++|++|++++|
T Consensus 93 ~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 93 DTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCC
Confidence 34555555543 333343 34444555555555433 443331123444555555555553
No 194
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.36 E-value=0.00043 Score=71.42 Aligned_cols=76 Identities=24% Similarity=0.171 Sum_probs=45.7
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|++|.+++| .+..+| +..+++|++|+++++. +..+| ++.+++|++|++++| ++..+| +.++++|++
T Consensus 63 l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~----~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 63 LTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK-LTNLD----VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTY 131 (457)
T ss_dssp CTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC----CTTCTTCCEEECCSS-CCSCCC--CTTCTTCCE
T ss_pred cCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCC-Cceee----cCCCCcCCEEECCCC-cCCeec--CCCCCcCCE
Confidence 455666666653 344444 5556666666666544 44443 455667777777664 566665 666777777
Q ss_pred eeccCCc
Q 045152 500 LGMEGSP 506 (533)
Q Consensus 500 L~~~~c~ 506 (533)
|++++|.
T Consensus 132 L~l~~N~ 138 (457)
T 3bz5_A 132 LNCARNT 138 (457)
T ss_dssp EECTTSC
T ss_pred EECCCCc
Confidence 7776664
No 195
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.35 E-value=0.0014 Score=68.94 Aligned_cols=165 Identities=15% Similarity=0.199 Sum_probs=79.2
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
.+++|-++-...+.+.+.-..-.......++.++|++|+||||||+.+... ....| .-++++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 357888877777655442111001124568999999999999999999863 22222 2233333222111111111
Q ss_pred HHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCcc----ccchhhhcccCC---------------CCCceEE
Q 045152 262 EGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYK----KWNPFFSCLKNG---------------HHESKIL 322 (533)
Q Consensus 262 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~----~~~~l~~~l~~~---------------~~gs~Ii 322 (533)
..++.. .......+.. .....-+++||+++..... ....+...+... .....+|
T Consensus 156 ~~ig~~------~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGAM------PGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhccC------chHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 111100 0111112222 2223348889999764322 123344333211 0334566
Q ss_pred EEecchHHHh--hhCCCCeeeCCCCChHhhHHHHHHhh
Q 045152 323 ITTRDRSVAL--QLGSIDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 323 iTtR~~~v~~--~~~~~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
.||....... .......+.+.+++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 6666532111 11123468999999999988887754
No 196
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.31 E-value=0.00031 Score=75.21 Aligned_cols=84 Identities=15% Similarity=0.081 Sum_probs=55.2
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCC-CcCCCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLL-PDSLLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~l-P~~~~~l~~L~ 498 (533)
++.|++|.+++|.--...|..+..+++|++|+++++. +..++. ..++.+++|++|++++| .+..+ |..+.++++|+
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAE-TALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLE 132 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CSEECT-TTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCC
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCc-ccccCh-hhhcccccccEeecccc-CcccCCcchhccCCccc
Confidence 4567777777654444446666777777777777655 444421 46677777777777774 56665 45677777777
Q ss_pred eeeccCCc
Q 045152 499 ELGMEGSP 506 (533)
Q Consensus 499 ~L~~~~c~ 506 (533)
+|++++|.
T Consensus 133 ~L~L~~n~ 140 (606)
T 3t6q_A 133 SLYLGSNH 140 (606)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 77777765
No 197
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.28 E-value=0.00034 Score=77.12 Aligned_cols=164 Identities=16% Similarity=0.232 Sum_probs=89.3
Q ss_pred CceeechhhHHHHHHHHhCCCc---cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESS---EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 258 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 258 (533)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+.+. .. ...+.++++......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~---- 528 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH---- 528 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSS----
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchh----
Confidence 4588998888888776643211 01234568999999999999999999863 21 223344443321100
Q ss_pred HHHHHhCCCCCCCccH---HHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCC-----------CCCceEEEE
Q 045152 259 AIIEGLGVSASGLSEF---ESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNG-----------HHESKILIT 324 (533)
Q Consensus 259 ~il~~l~~~~~~~~~~---~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IiiT 324 (533)
....+.+........ ..+...++ .....+++||++.....+....|...+..+ .....||.|
T Consensus 529 -~~~~l~g~~~g~~g~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 529 -TVSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp -CCSSSCCCCSCSHHHHHTTHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred -hHhhhcCCCCCCcCccccchHHHHHH---hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 000111111111111 11122222 234678999999776555555555554422 123457777
Q ss_pred ecchH----------------------HHhhh-----CC-CCeeeCCCCChHhhHHHHHHhh
Q 045152 325 TRDRS----------------------VALQL-----GS-IDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 325 tR~~~----------------------v~~~~-----~~-~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
|.... +...+ .. ...+.+.+++.++...++....
T Consensus 605 sN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp ECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred cCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHH
Confidence 75410 11111 11 3568899999998888887654
No 198
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.28 E-value=0.0017 Score=62.59 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..+..+.++|++|+|||+||+.+.+.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999974
No 199
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.22 E-value=0.00059 Score=76.13 Aligned_cols=135 Identities=18% Similarity=0.279 Sum_probs=71.2
Q ss_pred ceeechhhHHHHHHHHhCCCc---cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHH
Q 045152 183 EVCGRVEEKNELLSKLLCESS---EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 259 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 259 (533)
.++|.+..++.+...+..... +.......+.|+|++|+|||++|+.+.+. ....-...+.++++......
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~----- 631 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH----- 631 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-----
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-----
Confidence 579999988888887754321 01223468999999999999999999863 21111233444444322110
Q ss_pred HHHHhCCCCCC---CccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCC-----------CCceEEEEe
Q 045152 260 IIEGLGVSASG---LSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGH-----------HESKILITT 325 (533)
Q Consensus 260 il~~l~~~~~~---~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IiiTt 325 (533)
....+.+.... ......+...+.. ...-+|+||++...+......|...+..+. .+..||+||
T Consensus 632 ~~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 632 AVSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp GGGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred HHHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 00111110000 0001112222222 234689999997766555556666554331 244477887
Q ss_pred cc
Q 045152 326 RD 327 (533)
Q Consensus 326 R~ 327 (533)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 74
No 200
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.22 E-value=0.00038 Score=73.69 Aligned_cols=78 Identities=26% Similarity=0.394 Sum_probs=63.6
Q ss_pred cccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCc-------ceEEeccCCCCCCCCcCC
Q 045152 419 IMPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRL-------SSLRIEYCPKLKLLPDSL 491 (533)
Q Consensus 419 ilp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L-------~~L~l~~C~~l~~lP~~~ 491 (533)
.++.|++|.+++| .+..+|. +. ++|++|+++++ .|..+| . +.. +| ++|+|++ .+|..+|+++
T Consensus 158 ~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp--~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l 226 (571)
T 3cvr_A 158 LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTN-LLESLP--A-VPV--RNHHSEETEIFFRCRE-NRITHIPENI 226 (571)
T ss_dssp CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSS-CCSSCC--C-CC----------CCEEEECCS-SCCCCCCGGG
T ss_pred cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCC-CCCchh--h-HHH--hhhcccccceEEecCC-CcceecCHHH
Confidence 3578999999985 4677888 55 89999999976 488888 4 433 77 9999999 4899999999
Q ss_pred CCCCCcceeeccCCch
Q 045152 492 LQITTLKELGMEGSPL 507 (533)
Q Consensus 492 ~~l~~L~~L~~~~c~~ 507 (533)
.++++|++|++++|+.
T Consensus 227 ~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPL 242 (571)
T ss_dssp GGSCTTEEEECCSSSC
T ss_pred hcCCCCCEEEeeCCcC
Confidence 9999999999999984
No 201
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.20 E-value=0.00033 Score=68.17 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=57.0
Q ss_pred hHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC
Q 045152 190 EKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS 269 (533)
Q Consensus 190 e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~ 269 (533)
..+.+.+++..... .....+.|+|++|+|||+||..+++.... ..-..+.+++++ ++...+...+....
T Consensus 136 ~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~~------~l~~~l~~~~~~~~- 204 (308)
T 2qgz_A 136 AFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHFP------SFAIDVKNAISNGS- 204 (308)
T ss_dssp HHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEHH------HHHHHHHCCCC----
T ss_pred HHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEHH------HHHHHHHHHhccch-
Confidence 34455555543221 12467889999999999999999974220 222344555432 33443332221110
Q ss_pred CCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccccch--hhh-cccCC-CCCceEEEEecc
Q 045152 270 GLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYKKWNP--FFS-CLKNG-HHESKILITTRD 327 (533)
Q Consensus 270 ~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~~~~~--l~~-~l~~~-~~gs~IiiTtR~ 327 (533)
....... +. +.-+|||||+.......|.. +.. .+... ..+..+|+||..
T Consensus 205 ----~~~~~~~----~~-~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 205 ----VKEEIDA----VK-NVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp -----CCTTHH----HH-TSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred ----HHHHHHH----hc-CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 0011111 11 22389999996543333432 322 22211 234568888874
No 202
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.17 E-value=0.00044 Score=71.51 Aligned_cols=79 Identities=11% Similarity=0.174 Sum_probs=67.7
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.++.|.+..+ .+..+|. +..+++|++|++++|. +..+| + ++.+++|++|++++| .+..+|+ +.++++|++
T Consensus 45 l~~l~~L~l~~~-~i~~l~~-~~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIKSIDG-VEYLNNLTQINFSNNQ-LTDIT--P-LKNLTKLVDILMNNN-QIADITP-LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSS-CCCCCTT-GGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCE
T ss_pred hccccEEecCCC-CCccCcc-hhhhcCCCEEECCCCc-cCCch--h-hhccccCCEEECCCC-ccccChh-hcCCCCCCE
Confidence 567888988874 5677774 7889999999999876 88888 4 889999999999996 7888887 999999999
Q ss_pred eeccCCc
Q 045152 500 LGMEGSP 506 (533)
Q Consensus 500 L~~~~c~ 506 (533)
|++++|.
T Consensus 117 L~L~~n~ 123 (466)
T 1o6v_A 117 LTLFNNQ 123 (466)
T ss_dssp EECCSSC
T ss_pred EECCCCC
Confidence 9999885
No 203
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.17 E-value=0.003 Score=68.90 Aligned_cols=180 Identities=13% Similarity=0.062 Sum_probs=97.9
Q ss_pred ceeechhhHHHHHHHHhC----CCc---cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 183 EVCGRVEEKNELLSKLLC----ESS---EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
++.|-++.+++|.+.+.- .+- -+-..++-|.++|++|.|||+||+.+.+. ...+ .+.|+.+ +
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~------~ 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP------E 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHH------H
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhH------H
Confidence 578888888888776521 110 01234678999999999999999999974 2222 2333321 1
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc------ccc-----chhhhcccC--CCCCceEE
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDY------KKW-----NPFFSCLKN--GHHESKIL 322 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~------~~~-----~~l~~~l~~--~~~gs~Ii 322 (533)
+... ........+...+.......+.+|+||+++..-. ... ..+...+.. ...+..||
T Consensus 274 ----l~sk-----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VI 344 (806)
T 3cf2_A 274 ----IMSK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp ----HHSS-----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEE
T ss_pred ----hhcc-----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEE
Confidence 1111 0111222333344444456789999999954210 111 112222211 12234455
Q ss_pred EEecchHHH-hhh----CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCcch
Q 045152 323 ITTRDRSVA-LQL----GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLPLA 387 (533)
Q Consensus 323 iTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 387 (533)
.||...+.. ..+ .....+++...+.++-.++|+.+.- ........+ ...|++++.|.--|
T Consensus 345 aaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~-~~~~~~dvd----l~~lA~~T~Gfsga 409 (806)
T 3cf2_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK-NMKLADDVD----LEQVANETHGHVGA 409 (806)
T ss_dssp EECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCS-SSEECTTCC----HHHHHHHCCSCCHH
T ss_pred EecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhc-CCCCCcccC----HHHHHHhcCCCCHH
Confidence 566554322 211 1245788999999998899887653 111112222 35677888887644
No 204
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.15 E-value=0.00056 Score=67.28 Aligned_cols=152 Identities=17% Similarity=0.165 Sum_probs=82.3
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
..++|+++.++.+...+... ..+.++|++|+|||+||+.+.+. .... ...+.........++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~---~~~i~~~~~~~~~~l~g~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLD---FHRIQFTPDLLPSDLIGTMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCC---EEEEECCTTCCHHHHHEEEE
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCC---eEEEecCCCCChhhcCCcee
Confidence 35789999998888887542 35889999999999999999863 2222 22333333332222211100
Q ss_pred HHhCCCCCCCccHHHHHHHHHHHhCC--ceEEEEEeCCCCCCccccchhhhcccC-----------CCCCceEEEEecch
Q 045152 262 EGLGVSASGLSEFESLMKQIQEYITR--KKFFLVLDDVWDGDYKKWNPFFSCLKN-----------GHHESKILITTRDR 328 (533)
Q Consensus 262 ~~l~~~~~~~~~~~~l~~~l~~~l~~--kr~LlVLDdv~~~~~~~~~~l~~~l~~-----------~~~gs~IiiTtR~~ 328 (533)
+. ....... ...+ ...+++||+++..+......+...+.. ......||.|+...
T Consensus 94 --~~-~~~~~~~----------~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 94 --YN-QHKGNFE----------VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp --EE-TTTTEEE----------EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred --ec-CCCCceE----------eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 00 0000000 0000 125899999976554433334333321 12234455555422
Q ss_pred H------HHh-hhCCCC-eeeCCCCChHhhHHHHHHhhc
Q 045152 329 S------VAL-QLGSID-IIPVKELAEEECWSLLERLAF 359 (533)
Q Consensus 329 ~------v~~-~~~~~~-~~~l~~L~~~~~~~Lf~~~a~ 359 (533)
. +.. ...... .+.+.+.+.++-.+++.+...
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1 111 112223 588999999999999988763
No 205
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.13 E-value=0.0008 Score=65.41 Aligned_cols=85 Identities=20% Similarity=0.123 Sum_probs=44.1
Q ss_pred ccccceEEEeecCCcccCC----ccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCC--CC--cCC
Q 045152 420 MPCLSVLRVYLCPKLKVLP----DYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKL--LP--DSL 491 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp----~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~--lP--~~~ 491 (533)
++.|++|+++++.--...| ..+..+++|++|+++++. +..+|. ..++.+++|++|+|++|.-... +| ..+
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 4456666666543322222 122345666666666554 444442 3555666777777766532211 22 223
Q ss_pred CCCCCcceeeccCCc
Q 045152 492 LQITTLKELGMEGSP 506 (533)
Q Consensus 492 ~~l~~L~~L~~~~c~ 506 (533)
.++++|++|++++|.
T Consensus 194 ~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 194 HKFPAIQNLALRNTG 208 (310)
T ss_dssp TSSCCCCSCBCCSSC
T ss_pred hcCCCCCEEECCCCC
Confidence 456667777776664
No 206
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.12 E-value=0.0022 Score=58.62 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=52.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCC------------CCCCCccHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGV------------SASGLSEFE 275 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~------------~~~~~~~~~ 275 (533)
...++.|+|++|+|||||+..+.. ..-..++|++....++...+.. +...++. ......+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 456899999999999999988875 1224678888766445544432 3332221 111222223
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCC
Q 045152 276 SLMKQIQEYITRKKFFLVLDDVWD 299 (533)
Q Consensus 276 ~l~~~l~~~l~~kr~LlVLDdv~~ 299 (533)
.....++..+..+.-++|||.+-.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 344555555544577999999843
No 207
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.12 E-value=0.00085 Score=69.22 Aligned_cols=77 Identities=21% Similarity=0.080 Sum_probs=58.3
Q ss_pred cccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcc
Q 045152 419 IMPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLK 498 (533)
Q Consensus 419 ilp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~ 498 (533)
-++.|++|.+++|. +..+| +..+++|++|+++++. +..+| ++.+++|++|++++| .+..+| +.++++|+
T Consensus 83 ~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~~N~-l~~l~----~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~ 151 (457)
T 3bz5_A 83 QNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNK-LTKLD----VSQNPLLTYLNCARN-TLTEID--VSHNTQLT 151 (457)
T ss_dssp TCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECCSSC-CSCCC----CTTCTTCCEEECTTS-CCSCCC--CTTCTTCC
T ss_pred cCCCCCEEECcCCC-Cceee--cCCCCcCCEEECCCCc-CCeec----CCCCCcCCEEECCCC-ccceec--cccCCcCC
Confidence 36678888888754 56665 6778888888888764 66654 567888888888884 677775 77888888
Q ss_pred eeeccCCc
Q 045152 499 ELGMEGSP 506 (533)
Q Consensus 499 ~L~~~~c~ 506 (533)
+|++++|.
T Consensus 152 ~L~l~~n~ 159 (457)
T 3bz5_A 152 ELDCHLNK 159 (457)
T ss_dssp EEECTTCS
T ss_pred EEECCCCC
Confidence 88888884
No 208
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.03 E-value=0.00087 Score=66.43 Aligned_cols=77 Identities=26% Similarity=0.277 Sum_probs=65.9
Q ss_pred cccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 421 PCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 421 p~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
+.|+.|.++.+..+..+|.. +..+++|++|++++.. |..+| .. .+.+|+.|.+.+|.+++.+| .+.+|++|+.
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp--~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~ 250 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLP--SY--GLENLKKLRARSTYNLKKLP-TLEKLVALME 250 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCC--SS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCE
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccC--hh--hhccchHhhhccCCCcCcCC-CchhCcChhh
Confidence 46788888888899999975 5789999999999764 99999 33 37899999999999999999 5889999999
Q ss_pred eecc
Q 045152 500 LGME 503 (533)
Q Consensus 500 L~~~ 503 (533)
+++.
T Consensus 251 l~l~ 254 (350)
T 4ay9_X 251 ASLT 254 (350)
T ss_dssp EECS
T ss_pred CcCC
Confidence 9985
No 209
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.02 E-value=0.00032 Score=67.75 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=44.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEe--CCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV--SDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI 285 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l 285 (533)
..+++.|+|++|+||||||.++... .-..++|+++ .+..+. - ..+.+.....+.+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAM 180 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHH
Confidence 3467789999999999999988763 1224567776 332110 0 033455555555656
Q ss_pred CCceEEEEEeCCCC
Q 045152 286 TRKKFFLVLDDVWD 299 (533)
Q Consensus 286 ~~kr~LlVLDdv~~ 299 (533)
...+ ++|+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 5555 999999954
No 210
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.00 E-value=0.0014 Score=70.20 Aligned_cols=74 Identities=24% Similarity=0.279 Sum_probs=37.9
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccC------------------
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYC------------------ 481 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C------------------ 481 (533)
.+.|++|.+++| .+..+|. .+++|++|+++++. +..+| . .+++|++|+|++|
T Consensus 60 ~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp--~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~ 129 (622)
T 3g06_A 60 PAHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLP--V---LPPGLLELSIFSNPLTHLPALPSGLCKLWIF 129 (622)
T ss_dssp CTTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCC--C---CCTTCCEEEECSCCCCCCCCCCTTCCEEECC
T ss_pred CCCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCC--C---CCCCCCEEECcCCcCCCCCCCCCCcCEEECC
Confidence 345666666653 3455554 24555666665543 55555 1 3444444444442
Q ss_pred -CCCCCCCcCCCCCCCcceeeccCCc
Q 045152 482 -PKLKLLPDSLLQITTLKELGMEGSP 506 (533)
Q Consensus 482 -~~l~~lP~~~~~l~~L~~L~~~~c~ 506 (533)
.+|..+|.. +++|++|++++|.
T Consensus 130 ~N~l~~lp~~---l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 130 GNQLTSLPVL---PPGLQELSVSDNQ 152 (622)
T ss_dssp SSCCSCCCCC---CTTCCEEECCSSC
T ss_pred CCCCCcCCCC---CCCCCEEECcCCc
Confidence 234455542 2566666666664
No 211
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.97 E-value=0.0014 Score=67.52 Aligned_cols=74 Identities=23% Similarity=0.281 Sum_probs=33.7
Q ss_pred ccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcceee
Q 045152 422 CLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKELG 501 (533)
Q Consensus 422 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~L~ 501 (533)
.|++|.+++| .+..+| .+..+++|++|+++++. +..+|. . +++|++|++++| ++..+| .+.++++|++|+
T Consensus 132 ~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~--~---~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 132 LLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNS-LKKLPD--L---PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIY 201 (454)
T ss_dssp TCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSC-CSCCCC--C---CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEE
T ss_pred CCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCc-CcccCC--C---cccccEEECcCC-cCCcCc-cccCCCCCCEEE
Confidence 4555555543 333455 34555555555555442 444441 1 134444444443 344444 344444444444
Q ss_pred ccCC
Q 045152 502 MEGS 505 (533)
Q Consensus 502 ~~~c 505 (533)
+++|
T Consensus 202 l~~N 205 (454)
T 1jl5_A 202 ADNN 205 (454)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 4444
No 212
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.94 E-value=0.00028 Score=62.16 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=51.3
Q ss_pred ccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCC-cCCCCC----CCcceeeccCCchhH
Q 045152 435 KVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLP-DSLLQI----TTLKELGMEGSPLLE 509 (533)
Q Consensus 435 ~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP-~~~~~l----~~L~~L~~~~c~~l~ 509 (533)
..||.....-..|+.|++++|. +...- +..+..+++|+.|+|++|..+..-- ..+..+ ++|++|++++|+.++
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~~-Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDSC-IMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESCC-CCGGG-GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ccCCcccCCCceEeEEeCcCCC-ccHHH-HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 4566544334689999999998 54321 2356789999999999999885411 112232 479999999999655
No 213
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.88 E-value=0.0017 Score=68.75 Aligned_cols=71 Identities=25% Similarity=0.367 Sum_probs=41.7
Q ss_pred ccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcceee
Q 045152 422 CLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKELG 501 (533)
Q Consensus 422 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~L~ 501 (533)
.|++|.++++ .+..+|. .+++|++|+++++. +..+| . .+++|++|+|++| +|..+|. +. ++|++|+
T Consensus 121 ~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp--~---~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 121 SLKHLDVDNN-QLTMLPE---LPALLEYINADNNQ-LTMLP--E---LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALD 186 (571)
T ss_dssp TCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCC--C---CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEE
T ss_pred CCCEEECCCC-cCCCCCC---cCccccEEeCCCCc-cCcCC--C---cCCCcCEEECCCC-CCCCcch-hh--CCCCEEE
Confidence 5555555552 3444554 34566666666543 55555 2 3566777777664 5666776 44 6777777
Q ss_pred ccCCc
Q 045152 502 MEGSP 506 (533)
Q Consensus 502 ~~~c~ 506 (533)
+++|.
T Consensus 187 Ls~N~ 191 (571)
T 3cvr_A 187 VSTNL 191 (571)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 76664
No 214
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.79 E-value=0.0023 Score=65.82 Aligned_cols=75 Identities=29% Similarity=0.391 Sum_probs=42.6
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcce
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLKE 499 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~~ 499 (533)
++.|+.|.+++| .+..+|.. ..+|++|+++++. +..+| .++.+++|++|++++| ++..+|+. +++|++
T Consensus 194 l~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l~~n~-l~~lp---~~~~l~~L~~L~l~~N-~l~~l~~~---~~~L~~ 261 (454)
T 1jl5_A 194 LPFLTAIYADNN-SLKKLPDL---PLSLESIVAGNNI-LEELP---ELQNLPFLTTIYADNN-LLKTLPDL---PPSLEA 261 (454)
T ss_dssp CTTCCEEECCSS-CCSSCCCC---CTTCCEEECCSSC-CSSCC---CCTTCTTCCEEECCSS-CCSSCCSC---CTTCCE
T ss_pred CCCCCEEECCCC-cCCcCCCC---cCcccEEECcCCc-CCccc---ccCCCCCCCEEECCCC-cCCccccc---ccccCE
Confidence 445566665553 23444432 1456666666553 55555 3666777777777763 56666652 356666
Q ss_pred eeccCCc
Q 045152 500 LGMEGSP 506 (533)
Q Consensus 500 L~~~~c~ 506 (533)
|++++|.
T Consensus 262 L~l~~N~ 268 (454)
T 1jl5_A 262 LNVRDNY 268 (454)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 6666554
No 215
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.75 E-value=0.017 Score=59.63 Aligned_cols=175 Identities=17% Similarity=0.123 Sum_probs=89.1
Q ss_pred CceeechhhHHHHHHHHh---CCCcc---CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLL---CESSE---QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~---~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
.+++|.++.+.++.+... ....- +-.-.+-+.|+|++|+||||||+.+... .. ...+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~~~--- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFVE--- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGGTS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHHHH---
Confidence 468999887766665432 11000 0011233899999999999999999863 22 2233343321110
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhC----CceEEEEEeCCCCCCc----------ccc----chhhhcccCC--
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYIT----RKKFFLVLDDVWDGDY----------KKW----NPFFSCLKNG-- 315 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~----~kr~LlVLDdv~~~~~----------~~~----~~l~~~l~~~-- 315 (533)
. . .......+...+. ..+.++++|+++.... ..+ ..+...+..+
T Consensus 103 -----------~--~---~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 103 -----------M--F---VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp -----------S--C---TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred -----------h--h---hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 0 0 0011122222222 2357999999954211 011 1222222222
Q ss_pred CCCceEEEEecchHHHhh-h----CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCc
Q 045152 316 HHESKILITTRDRSVALQ-L----GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLP 385 (533)
Q Consensus 316 ~~gs~IiiTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 385 (533)
..+..++.||..+.+... + .....+.++..+.++-.+++..++- ......... ...|+..+.|+.
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~-~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR-GKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS-SSCCCCSST----THHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh-cCCCChHHH----HHHHHHhcCCCC
Confidence 223445556666654221 1 1245788888898888888876642 111111111 245677777766
No 216
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.70 E-value=0.008 Score=56.40 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=86.6
Q ss_pred CceeechhhHHHHHHHHhCCCcc------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSE------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
.+++|.+..+.++.+....-... .-.-.+-+.|+|++|+|||||++.+.... . ...+.++. .+
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~--~---~~~i~~~~------~~ 84 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASG------SD 84 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEH------HH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--C---CCEEEeeH------HH
Confidence 36788877666555443211000 00011228999999999999999998632 2 12233321 11
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCC----------cccc----chhhhcccCCC--CC
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYI-TRKKFFLVLDDVWDGD----------YKKW----NPFFSCLKNGH--HE 318 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVLDdv~~~~----------~~~~----~~l~~~l~~~~--~g 318 (533)
+ .... ..........+.+.. .....++++|+++... ...+ ..+...+..+. ..
T Consensus 85 ~----~~~~------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 154 (254)
T 1ixz_A 85 F----VEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154 (254)
T ss_dssp H----HHSC------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred H----HHHH------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC
Confidence 1 1110 001111122222332 3456899999994210 0011 12222222221 12
Q ss_pred ceEEEEecchHHHhh-h----CCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCc
Q 045152 319 SKILITTRDRSVALQ-L----GSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLP 385 (533)
Q Consensus 319 s~IiiTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 385 (533)
..++.||..+.+... . .....+.++..+.++-.+++...+- +........ ...+++.+.|.-
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~-~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR-GKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT-TSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc-CCCCCcccC----HHHHHHHcCCCC
Confidence 234446665544321 1 1245688888898888888876652 111111111 345777887765
No 217
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.69 E-value=0.011 Score=56.12 Aligned_cols=126 Identities=17% Similarity=0.122 Sum_probs=66.6
Q ss_pred EEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh-CCceE
Q 045152 212 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYI-TRKKF 290 (533)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~ 290 (533)
+.|+|++|.||||||+.+.... .. ..+.+....-.+ ............+.+.. ...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~--~~---~~i~i~g~~l~~----------------~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES--GL---NFISVKGPELLN----------------MYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT--TC---EEEEEETTTTCS----------------STTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHc--CC---CEEEEEcHHHHh----------------hhhhHHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999998632 11 234443221110 00001111122222222 34578
Q ss_pred EEEEeCCCCCCc-------ccc----chhhhcccCC--CCCceEEEEecchHHHhhh-----CCCCeeeCCCCChHhhHH
Q 045152 291 FLVLDDVWDGDY-------KKW----NPFFSCLKNG--HHESKILITTRDRSVALQL-----GSIDIIPVKELAEEECWS 352 (533)
Q Consensus 291 LlVLDdv~~~~~-------~~~----~~l~~~l~~~--~~gs~IiiTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~ 352 (533)
++++|++..... ... ..+...+..+ ....-++.+|..+.+.... .....+.++..+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999964210 011 1111222221 1233355566665443221 225678899999999999
Q ss_pred HHHHhh
Q 045152 353 LLERLA 358 (533)
Q Consensus 353 Lf~~~a 358 (533)
+|+...
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 998765
No 218
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.68 E-value=0.0047 Score=68.16 Aligned_cols=157 Identities=13% Similarity=0.058 Sum_probs=83.5
Q ss_pred CceeechhhHHHHHHHHhCCCc-------cCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESS-------EQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 254 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (533)
.+++|.+..++++.+++...-. -.-.....|.|+|++|+||||||+.+... ....| +.++.+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~------ 272 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch------
Confidence 4689999999888887743100 01134457999999999999999999863 22222 333311
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCcc-----------ccchhhhcccC--CCCCceE
Q 045152 255 RVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGDYK-----------KWNPFFSCLKN--GHHESKI 321 (533)
Q Consensus 255 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~~~-----------~~~~l~~~l~~--~~~gs~I 321 (533)
+ +.... .......+...+.........++++|++...... ....+...+.. ...+..+
T Consensus 273 ~--------l~~~~-~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 273 E--------IMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp H--------HSSSS-TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred H--------hhhhh-hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 1 11100 0011122223333333446789999999532110 01112222221 1223455
Q ss_pred EEEecchHHH-hhh----CCCCeeeCCCCChHhhHHHHHHhh
Q 045152 322 LITTRDRSVA-LQL----GSIDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 322 iiTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
|.||...... ..+ .....+.+...+.++-.+++...+
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 5566553221 111 113457888888999888888665
No 219
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.63 E-value=0.016 Score=57.06 Aligned_cols=157 Identities=9% Similarity=-0.016 Sum_probs=97.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHH-HhC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQE-YIT 286 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~-~l~ 286 (533)
-..+..++|+.|.||++.++.+.+.. ....|+....+.+....+ ..++.+.+.. -+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~---------------------~~~l~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTD---------------------WNAIFSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCC---------------------HHHHHHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCC---------------------HHHHHHHhcCcCCc
Confidence 35688899999999999998887631 123443322222222222 2333322221 234
Q ss_pred CceEEEEEeCCCC-CCccccchhhhcccCCCCCceEEEEecc-------hHHHhhh-CCCCeeeCCCCChHhhHHHHHHh
Q 045152 287 RKKFFLVLDDVWD-GDYKKWNPFFSCLKNGHHESKILITTRD-------RSVALQL-GSIDIIPVKELAEEECWSLLERL 357 (533)
Q Consensus 287 ~kr~LlVLDdv~~-~~~~~~~~l~~~l~~~~~gs~IiiTtR~-------~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~ 357 (533)
+++-++|+|+++. .+...++.+...+....+++.+|+++.. ..+...+ .....++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5677889999976 5556677788877766667777776643 2333333 23567888999999988888776
Q ss_pred hccCCCccccccchHHHHHHHhHhCCCcchhHH
Q 045152 358 AFFRRSVDDHEKLEPIGRKIAHKCKGLPLAAKV 390 (533)
Q Consensus 358 a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 390 (533)
+-..+ . .--.+....+++.++|.+..+..
T Consensus 155 ~~~~g-~---~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLN-L---ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTT-C---EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcC-C---CCCHHHHHHHHHHhchHHHHHHH
Confidence 53111 1 11235567788889998877654
No 220
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.54 E-value=0.00026 Score=71.28 Aligned_cols=84 Identities=20% Similarity=0.263 Sum_probs=66.5
Q ss_pred ccccceEEEeecCCc----ccCCccccccCccceeecccCCCCCC-----CCCccCC--CCCCCcceEEeccCCCCCC--
Q 045152 420 MPCLSVLRVYLCPKL----KVLPDYLLQTTTLQKLRILQCPSMEE-----LPILEDH--IFLPRLSSLRIEYCPKLKL-- 486 (533)
Q Consensus 420 lp~L~~L~l~~c~~l----~~lp~~l~~l~~L~~L~l~~~~~l~~-----lp~~~~~--~~l~~L~~L~l~~C~~l~~-- 486 (533)
++.|++|.+++|.-- ..+|..+..+++|++|++++|. +.. +| ..+ +.+++|++|+|++| .+..
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~--~~l~~~~~~~L~~L~L~~n-~i~~~g 290 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVV--DAFSKLENIGLQTLRLQYN-EIELDA 290 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHH--HHHHTCSSCCCCEEECCSS-CCBHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHH--HHHhhccCCCeEEEECcCC-cCCHHH
Confidence 678999999987642 6678888889999999999887 543 34 344 45899999999996 5665
Q ss_pred ---CCcCC-CCCCCcceeeccCCch
Q 045152 487 ---LPDSL-LQITTLKELGMEGSPL 507 (533)
Q Consensus 487 ---lP~~~-~~l~~L~~L~~~~c~~ 507 (533)
+|..+ .++++|++|++++|+.
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHHHhcCCCceEEEccCCcC
Confidence 88877 6689999999998873
No 221
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.51 E-value=0.0018 Score=59.51 Aligned_cols=112 Identities=13% Similarity=0.002 Sum_probs=60.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCC--CccHHHHHHHHHHHh
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASG--LSEFESLMKQIQEYI 285 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~--~~~~~~l~~~l~~~l 285 (533)
...++.|.|..|+||||++..+... ...+-..++.+....... ....+++.++..... .....++...+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 4578999999999999999776653 222322344443332211 112334444432111 123344555555555
Q ss_pred CCce-EEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecc
Q 045152 286 TRKK-FFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRD 327 (533)
Q Consensus 286 ~~kr-~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~ 327 (533)
.+.+ -+||+|.+.....+..+.+ ..+.+ .|..||+|-+.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLD 125 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCS
T ss_pred hCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecc
Confidence 4444 4999999954332323333 22222 26789998884
No 222
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.50 E-value=0.0063 Score=60.02 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=54.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC-----CCccHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS-----GLSEFESLMKQI 281 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l 281 (533)
....++.|.|++|+|||||+.++.... ...-..++|++....++.. .++.++.... ...+.++....+
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 356799999999999999998887642 2222357788877666544 4444544321 123455555555
Q ss_pred HHHhC-CceEEEEEeCCC
Q 045152 282 QEYIT-RKKFFLVLDDVW 298 (533)
Q Consensus 282 ~~~l~-~kr~LlVLDdv~ 298 (533)
...++ .+.-++|+|.+-
T Consensus 132 ~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHTSCCSEEEEECTT
T ss_pred HHHhhhcCCCeEEehHhh
Confidence 55543 455689999983
No 223
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.48 E-value=0.00052 Score=68.98 Aligned_cols=84 Identities=18% Similarity=0.202 Sum_probs=55.5
Q ss_pred ccccceEEEeecCCcc-----cCCccccccCccceeecccCCCC-----CCCCCccCCCCCCCcceEEeccCCCCCC---
Q 045152 420 MPCLSVLRVYLCPKLK-----VLPDYLLQTTTLQKLRILQCPSM-----EELPILEDHIFLPRLSSLRIEYCPKLKL--- 486 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~-----~lp~~l~~l~~L~~L~l~~~~~l-----~~lp~~~~~~~l~~L~~L~l~~C~~l~~--- 486 (533)
++.|+.|.+++|.--. -.|..+..+++|++|+++++. + ..+| ..+..+++|++|+|++|. +..
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~--~~l~~~~~L~~L~L~~n~-i~~~~~ 261 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA--IALKSWPNLRELGLNDCL-LSARGA 261 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHH--HHGGGCTTCCEEECTTCC-CCHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHH--HHHccCCCcCEEECCCCC-CchhhH
Confidence 4577778877753221 123366677788888888765 4 4456 466677888888888864 443
Q ss_pred --CCcCC--CCCCCcceeeccCCch
Q 045152 487 --LPDSL--LQITTLKELGMEGSPL 507 (533)
Q Consensus 487 --lP~~~--~~l~~L~~L~~~~c~~ 507 (533)
+|+.+ .++++|++|++++|..
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HHHHHHHhhccCCCeEEEECcCCcC
Confidence 45555 3478888888888763
No 224
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.48 E-value=0.0086 Score=59.86 Aligned_cols=23 Identities=39% Similarity=0.400 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+.++|++|+|||++|+.+.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999986
No 225
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.47 E-value=0.012 Score=57.98 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=54.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEEEeCCchhHHHHHHHHHHHhCCCC------------CC
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLGVSA------------SG 270 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~------------~~ 270 (533)
....++.|+|.+|+||||||..+........ .-..++|++....++...+.. ++..++... ..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 4567999999999999999988775321111 234688999887766665543 344443321 11
Q ss_pred CccHHHHHHHHHHHhC---CceEEEEEeCC
Q 045152 271 LSEFESLMKQIQEYIT---RKKFFLVLDDV 297 (533)
Q Consensus 271 ~~~~~~l~~~l~~~l~---~kr~LlVLDdv 297 (533)
......+...+...+. .+.-+||+|.+
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 1222233333444442 45668888888
No 226
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.46 E-value=0.007 Score=56.13 Aligned_cols=90 Identities=19% Similarity=0.222 Sum_probs=51.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEEEeCCchhHHHHHHHHHHHhCCCCC---------CCccH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS---------GLSEF 274 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~---------~~~~~ 274 (533)
...++.|+|++|+|||||+..+........ .-..++|++....++...+. .+++.++.... ...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 456899999999999999988875311111 13568888876654444332 33444433210 01112
Q ss_pred H---HHHHHHHHHhC-CceEEEEEeCCC
Q 045152 275 E---SLMKQIQEYIT-RKKFFLVLDDVW 298 (533)
Q Consensus 275 ~---~l~~~l~~~l~-~kr~LlVLDdv~ 298 (533)
. .....+.+.+. .+.-++|||++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2 22233444443 467789999984
No 227
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.32 E-value=0.01 Score=56.57 Aligned_cols=179 Identities=13% Similarity=0.068 Sum_probs=86.9
Q ss_pred CceeechhhHHHHHHHHhCCCcc------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHH
Q 045152 182 GEVCGRVEEKNELLSKLLCESSE------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 255 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (533)
.+++|.++.++++.+....-... .-.-.+-+.|+|++|+|||||++.+.... . ...+.++. .+
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~------~~ 108 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASG------SD 108 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEH------HH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc--C---CCEEEecH------HH
Confidence 46788887766665543211000 00011228999999999999999998632 2 22333321 11
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC----------ccccc----hhhhcccCCCC--Cc
Q 045152 256 VAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGD----------YKKWN----PFFSCLKNGHH--ES 319 (533)
Q Consensus 256 l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~----------~~~~~----~l~~~l~~~~~--gs 319 (533)
+. .... ......+...++..-...+.++++|++.... ...+. .+...+..+.. ..
T Consensus 109 ~~----~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~ 179 (278)
T 1iy2_A 109 FV----EMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 179 (278)
T ss_dssp HH----HSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCE
T ss_pred HH----HHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCE
Confidence 11 1100 0001112222222223456899999994210 00111 12222222211 22
Q ss_pred eEEEEecchHHHh-----hhCCCCeeeCCCCChHhhHHHHHHhhccCCCccccccchHHHHHHHhHhCCCc
Q 045152 320 KILITTRDRSVAL-----QLGSIDIIPVKELAEEECWSLLERLAFFRRSVDDHEKLEPIGRKIAHKCKGLP 385 (533)
Q Consensus 320 ~IiiTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 385 (533)
.++.||..+.+.. .......+.++..+.++-.+++...+- ......... ...++..+.|..
T Consensus 180 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~-~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 180 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR-GKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp EEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT-TSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc-cCCCCcccC----HHHHHHHcCCCC
Confidence 3444555543322 112345788999999988888886652 111111111 345777888866
No 228
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.30 E-value=0.0069 Score=55.70 Aligned_cols=116 Identities=19% Similarity=0.101 Sum_probs=59.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC------------------
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS------------------ 269 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~------------------ 269 (533)
...++.|+|++|+|||||+..+..... ..-..++|+.... ....+...+. .++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccC
Confidence 346899999999999999998875321 1223466666443 2333333322 3322110
Q ss_pred -----CCccHHHHHHHHHHHh---CCceEEEEEeCCCCC---CccccchhhhcccC--CCCCceEEEEecch
Q 045152 270 -----GLSEFESLMKQIQEYI---TRKKFFLVLDDVWDG---DYKKWNPFFSCLKN--GHHESKILITTRDR 328 (533)
Q Consensus 270 -----~~~~~~~l~~~l~~~l---~~kr~LlVLDdv~~~---~~~~~~~l~~~l~~--~~~gs~IiiTtR~~ 328 (533)
...+..++...+...+ ..+..++|||..-.. +......+...+.. ...|..||++|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0113445555554444 223349999998532 11122233333321 12467788888754
No 229
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.24 E-value=0.0094 Score=58.19 Aligned_cols=90 Identities=19% Similarity=0.316 Sum_probs=53.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhc---------cC-----CceEEEEeCCchhHHHHHHHHHHHhCCCCC---
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKR---------NF-----EKVIWVCVSDTFEEIRVAKAIIEGLGVSAS--- 269 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~l~~~il~~l~~~~~--- 269 (533)
+...++.|.|.+|+||||||.++........ .. ..++|++....++...+.+ +++.++....
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVL 174 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHh
Confidence 3467999999999999999988765321111 11 4688999888776665553 3444443210
Q ss_pred ------CCccHH---HHHHHHHHHhC--CceEEEEEeCC
Q 045152 270 ------GLSEFE---SLMKQIQEYIT--RKKFFLVLDDV 297 (533)
Q Consensus 270 ------~~~~~~---~l~~~l~~~l~--~kr~LlVLDdv 297 (533)
...+.+ .+...+...+. .+.-+||+|.+
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 011222 23344444443 35568888888
No 230
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.21 E-value=0.015 Score=55.84 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=52.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCC-----CccHHHH-HHHHHHH
Q 045152 211 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASG-----LSEFESL-MKQIQEY 284 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~-----~~~~~~l-~~~l~~~ 284 (533)
++-|.|++|+|||||+.++.........-..++||+....++.. .+++++..... ..+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999997776532211012468899887777653 36666654221 2344444 3333332
Q ss_pred --h-CCceEEEEEeCCC
Q 045152 285 --I-TRKKFFLVLDDVW 298 (533)
Q Consensus 285 --l-~~kr~LlVLDdv~ 298 (533)
+ .++.-++|+|-+-
T Consensus 105 ~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HTCCTTCCEEEEEECST
T ss_pred HHhhccCceEEEEeccc
Confidence 3 4567899999984
No 231
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.17 E-value=0.0051 Score=55.59 Aligned_cols=42 Identities=29% Similarity=0.297 Sum_probs=32.9
Q ss_pred chhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 187 RVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 187 R~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
|++.++.+.+.+.... .....+|+|+|+.|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5566777888776542 24568999999999999999998875
No 232
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.12 E-value=0.014 Score=56.93 Aligned_cols=89 Identities=20% Similarity=0.298 Sum_probs=53.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEEEeCCchhHHHHHHHHHHHhCCCCC---------CCccH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS---------GLSEF 274 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~---------~~~~~ 274 (533)
...++.|.|.+|+||||||..+........ .-..++|++....++...+.. +++.++.... ...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 456899999999999999988775321111 024688999887766665543 3455543210 01112
Q ss_pred H---HHHHHHHHHhC--CceEEEEEeCC
Q 045152 275 E---SLMKQIQEYIT--RKKFFLVLDDV 297 (533)
Q Consensus 275 ~---~l~~~l~~~l~--~kr~LlVLDdv 297 (533)
+ ++...+...+. .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 23344444443 45678888888
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.93 E-value=0.019 Score=55.18 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=44.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC-chhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYIT 286 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 286 (533)
...+++|+|++|+||||++..+......... ..+..+.... .....+.+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 4569999999999999999888753221111 2344554322 1223333333333333322111223334334432 3
Q ss_pred CceEEEEEeCC
Q 045152 287 RKKFFLVLDDV 297 (533)
Q Consensus 287 ~kr~LlVLDdv 297 (533)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34557889944
No 234
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.90 E-value=0.022 Score=56.51 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=54.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC-----CCccHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS-----GLSEFESLMKQIQ 282 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~ 282 (533)
...++.|.|.+|+||||||.++.... ...-..++|++....++.. ..+.++.... ...+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 45588899999999999998876532 2223468899987766543 2344443211 1234566666666
Q ss_pred HHhCC-ceEEEEEeCCC
Q 045152 283 EYITR-KKFFLVLDDVW 298 (533)
Q Consensus 283 ~~l~~-kr~LlVLDdv~ 298 (533)
...+. +.-+||+|.+-
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 65543 45699999984
No 235
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.86 E-value=0.019 Score=56.64 Aligned_cols=84 Identities=20% Similarity=0.176 Sum_probs=53.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC-----CCccHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS-----GLSEFESLMKQIQ 282 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~ 282 (533)
...++.|.|.+|+||||||.++... ....=..++|++....++.. ..+.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4568999999999999999888753 22223468899887766543 2444443211 1224555555555
Q ss_pred HHhC-CceEEEEEeCCC
Q 045152 283 EYIT-RKKFFLVLDDVW 298 (533)
Q Consensus 283 ~~l~-~kr~LlVLDdv~ 298 (533)
.... .+.-+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 5543 356699999984
No 236
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.77 E-value=0.018 Score=56.88 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=51.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC-----CCccHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS-----GLSEFESLMKQIQ 282 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~ 282 (533)
...++.|.|.+|+||||||.++.... ...-..++|++....++.. ....++.... ...+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 45689999999999999998877532 2222468899887766543 2344443211 1123444455444
Q ss_pred HHh-CCceEEEEEeCC
Q 045152 283 EYI-TRKKFFLVLDDV 297 (533)
Q Consensus 283 ~~l-~~kr~LlVLDdv 297 (533)
... ..+.-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 443 234568999998
No 237
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.66 E-value=0.0068 Score=54.09 Aligned_cols=117 Identities=17% Similarity=0.081 Sum_probs=59.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC---chhHHHHHHHHH---HHhCC--CCCCC------ccHH
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD---TFEEIRVAKAII---EGLGV--SASGL------SEFE 275 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~l~~~il---~~l~~--~~~~~------~~~~ 275 (533)
..|.|++-.|.||||.|--..- +.-.+=-.+.++.+.. ......++..+. ...+. ..... ....
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4566666677999999955543 2222222344444332 233344443331 00000 00000 0112
Q ss_pred HHHHHHHHHhCC-ceEEEEEeCCCC---CCccccchhhhcccCCCCCceEEEEecch
Q 045152 276 SLMKQIQEYITR-KKFFLVLDDVWD---GDYKKWNPFFSCLKNGHHESKILITTRDR 328 (533)
Q Consensus 276 ~l~~~l~~~l~~-kr~LlVLDdv~~---~~~~~~~~l~~~l~~~~~gs~IiiTtR~~ 328 (533)
......++.+.+ +-=|||||++-. ......+.+...+.......-||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 233344555544 445999999832 12233455666665555667799999985
No 238
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.57 E-value=0.0061 Score=53.23 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=18.6
Q ss_pred EEEEEEcCCCChHHHHHHHH
Q 045152 210 HVISLVGLGGIGKTTLAQLA 229 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v 229 (533)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999998
No 239
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.55 E-value=0.0018 Score=68.79 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=60.7
Q ss_pred ccccceEEEeecCCccc--CCccccccCccceeecccCCCCCC-----CCCccCCCCCCCcceEEeccCC-CC--CCCCc
Q 045152 420 MPCLSVLRVYLCPKLKV--LPDYLLQTTTLQKLRILQCPSMEE-----LPILEDHIFLPRLSSLRIEYCP-KL--KLLPD 489 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~~l~~-----lp~~~~~~~l~~L~~L~l~~C~-~l--~~lP~ 489 (533)
+|.|+.|.++.|..+.. ++.....+++|++|++++|. +.. ++ .....+++|++|++++|. .+ ..++.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLS--HFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGG--GSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHH--HHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 68899999999876654 55555578999999999887 332 33 233467899999999986 11 11222
Q ss_pred CCCCCCCcceeeccCCchh
Q 045152 490 SLLQITTLKELGMEGSPLL 508 (533)
Q Consensus 490 ~~~~l~~L~~L~~~~c~~l 508 (533)
-+.++++|++|++++|..+
T Consensus 206 l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHCTTCCEEECCTTSCH
T ss_pred HHHhCCCCcEEecCCCCcH
Confidence 2344699999999999543
No 240
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.53 E-value=0.0023 Score=68.05 Aligned_cols=85 Identities=25% Similarity=0.214 Sum_probs=62.7
Q ss_pred ccccceEEEeecCC----cccCCccccccCccceeecccCCCCCCCCC--c-cCCCCCCCcceEEeccCCCCCCCCcCCC
Q 045152 420 MPCLSVLRVYLCPK----LKVLPDYLLQTTTLQKLRILQCPSMEELPI--L-EDHIFLPRLSSLRIEYCPKLKLLPDSLL 492 (533)
Q Consensus 420 lp~L~~L~l~~c~~----l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~-~~~~~l~~L~~L~l~~C~~l~~lP~~~~ 492 (533)
+|.|++|.+++|.- ...++.....+++|++|++++|. ..++. + .-...+++|++|++++|..+..+|..+.
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 68899999998761 12233333457899999999886 12221 0 1123479999999999999988998899
Q ss_pred CCCCcceeeccCCc
Q 045152 493 QITTLKELGMEGSP 506 (533)
Q Consensus 493 ~l~~L~~L~~~~c~ 506 (533)
++++|++|++.+|.
T Consensus 233 ~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 233 RAPQLEELGTGGYT 246 (594)
T ss_dssp HCTTCSEEECSBCC
T ss_pred cCCcceEccccccc
Confidence 99999999988775
No 241
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.50 E-value=0.011 Score=53.69 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 191 KNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 191 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.++|.+.+... .....+|+|+|+.|.|||||++.+..
T Consensus 8 ~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555555322 24568999999999999999998875
No 242
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.49 E-value=0.024 Score=55.99 Aligned_cols=54 Identities=13% Similarity=-0.046 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeCCch
Q 045152 192 NELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTF 251 (533)
Q Consensus 192 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~ 251 (533)
-+.++.+..- .....++|+|.+|.|||||++.+.+... +.+-+ .++++-+.+..
T Consensus 162 iraID~~~pi-----~rGQr~~IvG~sG~GKTtLl~~Iar~i~-~~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 162 ARVLDLASPI-----GRGQRGLIVAPPKAGKTMLLQNIAQSIA-YNHPDCVLMVLLIDERP 216 (422)
T ss_dssp HHHHHHHSCC-----BTTCEEEEECCSSSSHHHHHHHHHHHHH-HHCTTSEEEEEEESSCH
T ss_pred ceeeeeeeee-----cCCcEEEEecCCCCChhHHHHHHHHHHh-hcCCCeeEEEEEecCCh
Confidence 3556666543 3456899999999999999998876311 11222 24456666654
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.44 E-value=0.0079 Score=53.56 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|+|||||++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999999986
No 244
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.42 E-value=0.043 Score=55.78 Aligned_cols=87 Identities=18% Similarity=0.173 Sum_probs=50.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCch-hHHHHHHHHHHHhCC-------CCCCCccHHH-----
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVAKAIIEGLGV-------SASGLSEFES----- 276 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~-------~~~~~~~~~~----- 276 (533)
..++|+|.+|+|||||++.+..+... .+-+.++++.+.+.. ...+++.++...-.. ..........
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999988864222 233456677776654 344555555432000 0011111111
Q ss_pred HHHHHHHHh---CCceEEEEEeCC
Q 045152 277 LMKQIQEYI---TRKKFFLVLDDV 297 (533)
Q Consensus 277 l~~~l~~~l---~~kr~LlVLDdv 297 (533)
..-.+.+++ .++..|+++||+
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCcEEEEeccH
Confidence 111223333 578999999999
No 245
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.40 E-value=0.036 Score=53.79 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=31.2
Q ss_pred eechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 185 CGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 185 vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+|....+..+...+.... ......+|+|.|+.|+|||||++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344444555554454432 235678999999999999999988864
No 246
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.34 E-value=0.016 Score=55.60 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 191 KNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 191 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.++++..++.... ......+|.|.|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 16 LNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444444444322 234568899999999999999999875
No 247
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.33 E-value=0.0076 Score=56.92 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=46.5
Q ss_pred ccccceEEEeecCCcc---cCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCCCCc-------
Q 045152 420 MPCLSVLRVYLCPKLK---VLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKLLPD------- 489 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~---~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~------- 489 (533)
+|.|+.|.++++ .+. .+|..+..+++|++|+|++ +.+..+..+..+..+ +|++|+|++.+--..+|+
T Consensus 169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 677888888773 333 3445555677788887774 335555422333334 777777777553334552
Q ss_pred CCCCCCCcceee
Q 045152 490 SLLQITTLKELG 501 (533)
Q Consensus 490 ~~~~l~~L~~L~ 501 (533)
-+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244566777665
No 248
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.30 E-value=0.0081 Score=52.80 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 249
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.29 E-value=0.0098 Score=56.18 Aligned_cols=62 Identities=24% Similarity=0.237 Sum_probs=48.2
Q ss_pred ccCccceeecccCCCCCCCCCc-cCCCCCCCcceEEeccCCCCCCCCcCCCCCC--CcceeeccCCch
Q 045152 443 QTTTLQKLRILQCPSMEELPIL-EDHIFLPRLSSLRIEYCPKLKLLPDSLLQIT--TLKELGMEGSPL 507 (533)
Q Consensus 443 ~l~~L~~L~l~~~~~l~~lp~~-~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~--~L~~L~~~~c~~ 507 (533)
.+++|+.|+|++.. |..++.+ ..+..+++|+.|+|++ .+|+.+. .+..++ +|++|+++++|.
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSG-NELKSER-ELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTT-SCCCSGG-GGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCC-CccCCch-hhhhcccCCcceEEccCCcC
Confidence 46789999999643 6665522 2345799999999998 7898884 466666 999999999995
No 250
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.28 E-value=0.058 Score=53.16 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=31.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccC----CceEEEEeCCchh
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF----EKVIWVCVSDTFE 252 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~ 252 (533)
+...++.|+|+.|+|||||+..+.......... ..++|++....+.
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~ 178 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 178 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC
Confidence 456899999999999999998887532111111 2458888765543
No 251
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.24 E-value=0.0086 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999875
No 252
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.23 E-value=0.0096 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 253
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.20 E-value=0.014 Score=55.86 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
....+|+|+|..|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999888753
No 254
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.19 E-value=0.0087 Score=53.86 Aligned_cols=23 Identities=39% Similarity=0.411 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|.|+|+.|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
No 255
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.18 E-value=0.047 Score=54.77 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=36.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEEEeCCchhHHHHHHHHHHHhCC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLGV 266 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 266 (533)
.-.++.|+|++|+|||||+..+.-...... .-..++|++....+....+. .+.+.++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl 238 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL 238 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence 456999999999999999986642111111 23458888876655544432 34555543
No 256
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.18 E-value=0.01 Score=52.47 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999875
No 257
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.17 E-value=0.095 Score=50.49 Aligned_cols=89 Identities=22% Similarity=0.253 Sum_probs=47.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchh--HHHHHHHHHHHhCCCC---CCCccHHH-HHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE--EIRVAKAIIEGLGVSA---SGLSEFES-LMKQ 280 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~l~~~il~~l~~~~---~~~~~~~~-l~~~ 280 (533)
....++.|+|++|+||||++..+... ....-..+.++... .+. ..+-+....+..+... ....+... ....
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 35689999999999999999888753 22222234455433 222 1222333444443221 11112222 2233
Q ss_pred HHHHhCCceEEEEEeCCC
Q 045152 281 IQEYITRKKFFLVLDDVW 298 (533)
Q Consensus 281 l~~~l~~kr~LlVLDdv~ 298 (533)
+...+..+.-++|+|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444444555588889763
No 258
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.16 E-value=0.014 Score=60.30 Aligned_cols=42 Identities=21% Similarity=0.175 Sum_probs=35.0
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.++|.++.++.+...+... ..|.|+|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4789998888888777533 36889999999999999999873
No 259
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.12 E-value=0.013 Score=52.84 Aligned_cols=25 Identities=40% Similarity=0.367 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...+|.|+|+.|.|||||++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999863
No 260
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.12 E-value=0.0082 Score=53.39 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998875
No 261
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.04 E-value=0.015 Score=50.98 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+|+|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 262
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.01 E-value=0.012 Score=51.64 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 456899999999999999997553
No 263
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.01 E-value=0.0031 Score=64.75 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=15.8
Q ss_pred cCccceeecccCCCCCC-----CCCccCCCCCCCcceEEeccC
Q 045152 444 TTTLQKLRILQCPSMEE-----LPILEDHIFLPRLSSLRIEYC 481 (533)
Q Consensus 444 l~~L~~L~l~~~~~l~~-----lp~~~~~~~l~~L~~L~l~~C 481 (533)
+++|++|++++|. +.. +| ..+..+++|++|++++|
T Consensus 255 ~~~L~~L~L~~n~-l~~~~~~~l~--~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 255 SSRLRTLWIWECG-ITAKGCGDLC--RVLRAKESLKELSLAGN 294 (461)
T ss_dssp TCCCCEEECTTSC-CCHHHHHHHH--HHHHHCTTCCEEECTTC
T ss_pred CCCceEEECcCCC-CCHHHHHHHH--HHHhhCCCcceEECCCC
Confidence 3455555555442 333 33 23333455555555553
No 264
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.99 E-value=0.12 Score=52.15 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+.+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999977765
No 265
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.98 E-value=0.012 Score=53.32 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...+|+|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4568999999999999999999763
No 266
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.96 E-value=0.013 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 45899999999999999998875
No 267
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=94.95 E-value=0.0029 Score=64.92 Aligned_cols=34 Identities=26% Similarity=0.530 Sum_probs=16.5
Q ss_pred CcceEEeccCCCCC-----CCCcCCCCCCCcceeeccCCc
Q 045152 472 RLSSLRIEYCPKLK-----LLPDSLLQITTLKELGMEGSP 506 (533)
Q Consensus 472 ~L~~L~l~~C~~l~-----~lP~~~~~l~~L~~L~~~~c~ 506 (533)
+|++|++++|. +. .+|..+.++++|++|++++|+
T Consensus 86 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 86 KIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred ceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 45555555542 33 334444555555555555554
No 268
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.93 E-value=0.011 Score=51.74 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 269
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.93 E-value=0.038 Score=50.00 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+|.|.|++|+||||.|+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999886
No 270
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.91 E-value=0.02 Score=53.76 Aligned_cols=40 Identities=28% Similarity=0.257 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 191 KNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 191 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+.+...+..... ......+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4455555554432 335568999999999999999999875
No 271
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.90 E-value=0.017 Score=57.29 Aligned_cols=50 Identities=28% Similarity=0.274 Sum_probs=35.2
Q ss_pred ceeechhhHHHHHHHHhCC-------C--ccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 183 EVCGRVEEKNELLSKLLCE-------S--SEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.++|.+..++.+...+... . .........+.++|++|+|||++|+.+.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3688888888887776210 0 001123467899999999999999999863
No 272
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.89 E-value=0.014 Score=51.94 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999875
No 273
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.85 E-value=0.11 Score=50.27 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=36.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEG 263 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~ 263 (533)
....++.|.|.+|+||||||..+..+.... . ..++|++.. .+...+...++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDN-D-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTT-T-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-C-CeEEEEECC--CCHHHHHHHHHHH
Confidence 345689999999999999998876542222 2 567777655 4556666666554
No 274
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.84 E-value=0.014 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 275
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.83 E-value=0.012 Score=51.98 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999875
No 276
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.80 E-value=0.0051 Score=61.13 Aligned_cols=87 Identities=23% Similarity=0.287 Sum_probs=58.3
Q ss_pred ccccceEEEeecCC-------cccCCcccc--ccCccceeecccCCCCCCCCC-ccCCCCCCCcceEEeccCCCCCC---
Q 045152 420 MPCLSVLRVYLCPK-------LKVLPDYLL--QTTTLQKLRILQCPSMEELPI-LEDHIFLPRLSSLRIEYCPKLKL--- 486 (533)
Q Consensus 420 lp~L~~L~l~~c~~-------l~~lp~~l~--~l~~L~~L~l~~~~~l~~lp~-~~~~~~l~~L~~L~l~~C~~l~~--- 486 (533)
+|+|+.|.++.+.+ +..+...+. ..++|++|++.+|..-...+. +.....+++|++|+|+. ..|..
T Consensus 218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~ 296 (362)
T 2ra8_A 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGA 296 (362)
T ss_dssp CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHH
T ss_pred CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHH
Confidence 78899999875322 222222222 368999999988763221110 11224589999999976 46754
Q ss_pred --CCcCCCCCCCcceeeccCCch
Q 045152 487 --LPDSLLQITTLKELGMEGSPL 507 (533)
Q Consensus 487 --lP~~~~~l~~L~~L~~~~c~~ 507 (533)
++.++.++++|+.|++++|..
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHhhcccCCcceEEECCCCcC
Confidence 677777899999999999873
No 277
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.79 E-value=0.016 Score=52.60 Aligned_cols=24 Identities=42% Similarity=0.371 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+|+|+|+.|.|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998875
No 278
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.78 E-value=0.13 Score=52.06 Aligned_cols=25 Identities=40% Similarity=0.314 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...+|.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888753
No 279
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.76 E-value=0.014 Score=51.80 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 280
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.72 E-value=0.017 Score=51.38 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999964
No 281
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.71 E-value=0.012 Score=52.26 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999875
No 282
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.69 E-value=0.016 Score=52.14 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999875
No 283
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.64 E-value=0.013 Score=52.82 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 284
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.64 E-value=0.019 Score=51.85 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....+|+|+|+.|.||||+|+.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999876
No 285
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=94.63 E-value=0.0088 Score=59.37 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=54.3
Q ss_pred cc-ccceEEEeecCCcccCCcccccc-----CccceeecccCCCCCCCCCccC----CCCC-CCcceEEeccCCCCCCCC
Q 045152 420 MP-CLSVLRVYLCPKLKVLPDYLLQT-----TTLQKLRILQCPSMEELPILED----HIFL-PRLSSLRIEYCPKLKLLP 488 (533)
Q Consensus 420 lp-~L~~L~l~~c~~l~~lp~~l~~l-----~~L~~L~l~~~~~l~~lp~~~~----~~~l-~~L~~L~l~~C~~l~~lP 488 (533)
+| .|+.|++++|.--..-+..+..+ ++|++|++++|. +...+. .. +..+ ++|++|++++| .+...+
T Consensus 49 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~ 125 (362)
T 3goz_A 49 TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSS-DELVKTLAAIPFTITVLDLGWN-DFSSKS 125 (362)
T ss_dssp CCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH-HHHHHHHHTSCTTCCEEECCSS-CGGGSC
T ss_pred CCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHH-HHHHHHHHhCCCCccEEECcCC-cCCcHH
Confidence 55 68888888764333334444443 788888888776 554331 11 3334 78999999886 476666
Q ss_pred c-C----CCC-CCCcceeeccCCch
Q 045152 489 D-S----LLQ-ITTLKELGMEGSPL 507 (533)
Q Consensus 489 ~-~----~~~-l~~L~~L~~~~c~~ 507 (533)
. . +.. .++|++|++++|..
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred HHHHHHHHHhCCCceeEEEccCCcC
Confidence 3 1 333 26899999988864
No 286
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.62 E-value=0.029 Score=54.92 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=30.5
Q ss_pred echhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 186 GRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 186 GR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+-+.-.+++++.+...- ..+....|.|+|+.|+||||+++.+..
T Consensus 3 ~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34445566666653222 124566799999999999999998876
No 287
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.61 E-value=0.016 Score=51.40 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+|.|.|++|+||||+++.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 288
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.61 E-value=0.018 Score=50.86 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988754
No 289
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.59 E-value=0.23 Score=50.34 Aligned_cols=65 Identities=25% Similarity=0.211 Sum_probs=45.5
Q ss_pred HHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCch-hHHHHHHHHHHH
Q 045152 193 ELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVAKAIIEG 263 (533)
Q Consensus 193 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~~ 263 (533)
+.++.|..- .+-.-++|+|.+|+|||+|+..+.++. .+.+-+.++++-+.+.. .+.++.+++...
T Consensus 142 r~ID~l~pi-----gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY-----AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE-----ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc-----ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 566666533 345688999999999999998887631 23344667888787765 456677777654
No 290
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.59 E-value=0.013 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+|.|+|++|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 291
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.58 E-value=0.014 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999998875
No 292
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.56 E-value=0.0042 Score=55.32 Aligned_cols=22 Identities=23% Similarity=0.051 Sum_probs=18.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.++.|+|+.|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999955544
No 293
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.54 E-value=0.021 Score=51.38 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....+|+|.|+.|+||||+|+.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998875
No 294
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.53 E-value=0.02 Score=51.40 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....+|+|+|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999875
No 295
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.53 E-value=0.036 Score=56.94 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.+.|.|.+|.||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999888764
No 296
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.49 E-value=0.015 Score=51.33 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|.|+|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999875
No 297
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.48 E-value=0.029 Score=59.36 Aligned_cols=81 Identities=15% Similarity=0.039 Sum_probs=43.4
Q ss_pred ccccceEEEeecCCc---ccCCccccccCccceeecccCCCCCCCCCccCCCCCCCcceEEeccCCCCCC--CCcCCCCC
Q 045152 420 MPCLSVLRVYLCPKL---KVLPDYLLQTTTLQKLRILQCPSMEELPILEDHIFLPRLSSLRIEYCPKLKL--LPDSLLQI 494 (533)
Q Consensus 420 lp~L~~L~l~~c~~l---~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~C~~l~~--lP~~~~~l 494 (533)
++.|+.|.++.+... ...+..+..+.+|+.|+++++. ...+| ..+..+++|++|+|++|. +.. ++.-+.++
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~--~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~ 317 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMP--ILFPFAAQIRKLDLLYAL-LETEDHCTLIQKC 317 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGG--GGGGGGGGCCEEEETTCC-CCHHHHHHHHTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHH--HHHhhcCCCcEEecCCCc-CCHHHHHHHHHhC
Confidence 455666666532221 2233344555666666666532 34455 345556777777777766 422 22234566
Q ss_pred CCcceeeccC
Q 045152 495 TTLKELGMEG 504 (533)
Q Consensus 495 ~~L~~L~~~~ 504 (533)
++|++|++++
T Consensus 318 ~~L~~L~L~~ 327 (592)
T 3ogk_B 318 PNLEVLETRN 327 (592)
T ss_dssp TTCCEEEEEG
T ss_pred cCCCEEeccC
Confidence 7777777753
No 298
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.47 E-value=0.076 Score=57.92 Aligned_cols=158 Identities=13% Similarity=0.055 Sum_probs=77.5
Q ss_pred CCceeechhhHHHHHHHHhCCCcc-------CCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhH
Q 045152 181 EGEVCGRVEEKNELLSKLLCESSE-------QQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE 253 (533)
Q Consensus 181 ~~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 253 (533)
-.++.|.++.+++|.+.+.-.... +-...+-+.++|++|.|||.||+.+.+. ... -++.++..
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~-----~f~~v~~~--- 545 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQA-----NFISIKGP--- 545 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTC-----EEEECCHH---
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCC-----ceEEeccc---
Confidence 345778888888877765322110 1223456889999999999999999974 221 23333321
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC----------ccc----cchhhhcccCC--CC
Q 045152 254 IRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKKFFLVLDDVWDGD----------YKK----WNPFFSCLKNG--HH 317 (533)
Q Consensus 254 ~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv~~~~----------~~~----~~~l~~~l~~~--~~ 317 (533)
+++....+ .....+...+...-+..+.+|+||+++..- ... ...|+..+... ..
T Consensus 546 -----~l~s~~vG-----ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 546 -----ELLTMWFG-----ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp -----HHHTTTCS-----SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred -----hhhccccc-----hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 12222211 112223333333335578999999995320 001 11222222211 22
Q ss_pred CceEEEEecchHHH-----hhhCCCCeeeCCCCChHhhHHHHHHhh
Q 045152 318 ESKILITTRDRSVA-----LQLGSIDIIPVKELAEEECWSLLERLA 358 (533)
Q Consensus 318 gs~IiiTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~a 358 (533)
+.-||-||..+... +.-.....+.++.-+.++-.++|+.+.
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 33334355543221 111235677887777777777776554
No 299
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.47 E-value=0.02 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998875
No 300
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.46 E-value=0.018 Score=51.68 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999876
No 301
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.44 E-value=0.021 Score=50.66 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....|.|+|+.|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998875
No 302
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.43 E-value=0.022 Score=51.92 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...++|.|.|++|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999886
No 303
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.39 E-value=0.021 Score=51.19 Aligned_cols=24 Identities=21% Similarity=0.577 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999998875
No 304
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.36 E-value=0.02 Score=52.41 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 305
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=94.36 E-value=0.0052 Score=61.07 Aligned_cols=84 Identities=13% Similarity=0.117 Sum_probs=62.0
Q ss_pred ccceEEEeecCCccc-----CCcccccc-CccceeecccCCCCCCCCC---ccCCCCCCCcceEEeccCC-------CCC
Q 045152 422 CLSVLRVYLCPKLKV-----LPDYLLQT-TTLQKLRILQCPSMEELPI---LEDHIFLPRLSSLRIEYCP-------KLK 485 (533)
Q Consensus 422 ~L~~L~l~~c~~l~~-----lp~~l~~l-~~L~~L~l~~~~~l~~lp~---~~~~~~l~~L~~L~l~~C~-------~l~ 485 (533)
.|+.|++++|. +.. ++..+..+ ++|++|+++++. +...+. ...+..+++|++|+|++|. .+.
T Consensus 197 ~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 197 SVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp TCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred CCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 78999998865 333 56666553 599999999865 655442 1235678999999999975 245
Q ss_pred CCCcCCCCCCCcceeeccCCch
Q 045152 486 LLPDSLLQITTLKELGMEGSPL 507 (533)
Q Consensus 486 ~lP~~~~~l~~L~~L~~~~c~~ 507 (533)
.++..+.++++|+.|++++++.
T Consensus 275 ~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHHTTSTTCCEEEEECTTSCBC
T ss_pred HHHHHhccCCceEEEecCCCcC
Confidence 5666788899999999998873
No 306
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.35 E-value=0.026 Score=50.02 Aligned_cols=26 Identities=38% Similarity=0.362 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
....+|.|.|++|+||||+++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999863
No 307
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.35 E-value=0.12 Score=52.75 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=61.9
Q ss_pred HHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCch-hHHHHHHHHHHHhCCC----
Q 045152 193 ELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVAKAIIEGLGVS---- 267 (533)
Q Consensus 193 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~---- 267 (533)
+.++.|..- .+-.-++|+|.+|+|||+|+..+.++ ..+.+-+.++++-+.+.. .+.++.+++...-...
T Consensus 154 rvID~l~pi-----gkGqr~gIfgg~GvGKT~L~~~l~~~-~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPY-----RRGGKIGLFGGAGVGKTVLIMELINN-IAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCC-----CTTCCEEEEECSSSSHHHHHHHHHHH-TTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeeccc-----ccCCeEEeecCCCCCchHHHHHHHHH-HHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 455666433 34567899999999999999888763 123355788888887765 4567777776542111
Q ss_pred ----------CCCCcc-----HHHHHHHHHHHhC---CceEEEEEeCC
Q 045152 268 ----------ASGLSE-----FESLMKQIQEYIT---RKKFFLVLDDV 297 (533)
Q Consensus 268 ----------~~~~~~-----~~~l~~~l~~~l~---~kr~LlVLDdv 297 (533)
..+... .....-.+.++++ ++.+|+++||+
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 001111 1122333445554 57999999998
No 308
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.35 E-value=0.083 Score=51.56 Aligned_cols=51 Identities=12% Similarity=0.028 Sum_probs=33.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 262 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 262 (533)
...++.|.|.+|+||||||..+..+... +=..++|++.. .+...+...++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHH
Confidence 4468899999999999999888764322 22356666543 344555555543
No 309
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.35 E-value=0.024 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...|.|.|++|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 310
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.35 E-value=0.019 Score=49.89 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999875
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.32 E-value=0.021 Score=53.53 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+|.|.|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999875
No 312
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.31 E-value=0.019 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+|.|.|++|+||||+|+.+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999875
No 313
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.30 E-value=0.027 Score=54.61 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....+|+|+|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567999999999999999998875
No 314
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.29 E-value=0.025 Score=51.01 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 315
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.28 E-value=0.023 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 316
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.27 E-value=0.022 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999998875
No 317
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.26 E-value=0.03 Score=48.36 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|.|||||++.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999998875
No 318
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.24 E-value=0.022 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 319
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.23 E-value=0.023 Score=49.51 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...++.|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999998863
No 320
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.23 E-value=0.022 Score=51.33 Aligned_cols=21 Identities=43% Similarity=0.498 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999998874
No 321
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.20 E-value=0.034 Score=51.75 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999875
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.19 E-value=0.025 Score=51.06 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..|.|.|++|+||||+|+.+.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999763
No 323
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.17 E-value=0.032 Score=50.99 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
....|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5688999999999999999888764
No 324
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.17 E-value=0.025 Score=50.78 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999875
No 325
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.13 E-value=0.029 Score=52.29 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 326
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.11 E-value=0.022 Score=49.87 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 327
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.09 E-value=0.029 Score=49.71 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|+|.|+.|+||||+|+.+.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 328
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.09 E-value=0.025 Score=51.73 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999875
No 329
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.09 E-value=0.22 Score=50.48 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=21.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...++|.++|.+|+||||++..+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999977765
No 330
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.09 E-value=0.021 Score=52.23 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|+|||||++.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345899999999999999998875
No 331
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.08 E-value=0.017 Score=50.85 Aligned_cols=23 Identities=30% Similarity=0.298 Sum_probs=16.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999875
No 332
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.04 E-value=0.029 Score=52.53 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=21.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998875
No 333
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.04 E-value=0.027 Score=54.35 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|++|+|||||+..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999988875
No 334
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.04 E-value=0.17 Score=49.18 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....+++|+|+.|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988875
No 335
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.99 E-value=0.087 Score=46.79 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999886
No 336
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=93.98 E-value=0.038 Score=54.76 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=17.8
Q ss_pred CCCCcceEEeccCCCCCCCCcC---CCCCCCcceeeccCCc
Q 045152 469 FLPRLSSLRIEYCPKLKLLPDS---LLQITTLKELGMEGSP 506 (533)
Q Consensus 469 ~l~~L~~L~l~~C~~l~~lP~~---~~~l~~L~~L~~~~c~ 506 (533)
.+|+|++|+|++|.--...+.. ...+++|++|+++.|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 3566666666665432111100 0135566666665553
No 337
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.94 E-value=0.028 Score=48.75 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 338
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.93 E-value=0.22 Score=50.19 Aligned_cols=24 Identities=42% Similarity=0.353 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...++.|+|.+|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988875
No 339
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.91 E-value=0.21 Score=48.38 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....+|+|+|.+|+||||++..+..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999988875
No 340
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.90 E-value=0.034 Score=48.89 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 341
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.88 E-value=0.026 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|+|.|++|+||||+|+.+.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 342
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.87 E-value=0.028 Score=49.87 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 343
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.85 E-value=0.5 Score=48.72 Aligned_cols=25 Identities=40% Similarity=0.408 Sum_probs=20.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....+|.|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988874
No 344
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.85 E-value=0.024 Score=49.38 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 345
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.84 E-value=0.13 Score=45.96 Aligned_cols=51 Identities=25% Similarity=0.261 Sum_probs=32.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHH
Q 045152 211 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEG 263 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~ 263 (533)
.|+|=|..|+||||.++.+.+. .+..-..+++..-+......+..+.++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKILLE 52 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHhhc
Confidence 3778899999999999999873 33333344555444444444555555543
No 346
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.83 E-value=0.24 Score=47.41 Aligned_cols=88 Identities=25% Similarity=0.177 Sum_probs=45.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-hhHHHHHHHHHHHhCCC---CCCCccHHHHHHHHHHH
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEEIRVAKAIIEGLGVS---ASGLSEFESLMKQIQEY 284 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~il~~l~~~---~~~~~~~~~l~~~l~~~ 284 (533)
..++.++|.+|+||||++..+.... ...-..+.++..... ......+....+..+.. .....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~--~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY--KKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH--HHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 6789999999999999998887532 222224555554322 12223333344444332 11112333333333333
Q ss_pred hC-CceEEEEEeCCC
Q 045152 285 IT-RKKFFLVLDDVW 298 (533)
Q Consensus 285 l~-~kr~LlVLDdv~ 298 (533)
++ ...=++++|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 33 333478888763
No 347
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.82 E-value=0.028 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...|.|.|++|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 348
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.80 E-value=0.29 Score=45.11 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=53.5
Q ss_pred EEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCC--------CCC-----CccHHHHH
Q 045152 212 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVS--------ASG-----LSEFESLM 278 (533)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~--------~~~-----~~~~~~l~ 278 (533)
+.|+|+.|.|||.+|..+.... -..++++ +....-..++...+.+ ++.. ... ....+.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv-~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL-----STPTLIV-VPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS-----CSCEEEE-ESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-----CCCEEEE-eCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHH
Confidence 7789999999999998776421 1234444 3332222333333322 2211 000 01233333
Q ss_pred HHHHHHhCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEe
Q 045152 279 KQIQEYITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITT 325 (533)
Q Consensus 279 ~~l~~~l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTt 325 (533)
.... .+..+--+||+|+++......+..+...++ ...++.+|.
T Consensus 184 ~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 184 VNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp HTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred hhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 3333 334455699999998765555666555443 234455554
No 349
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.78 E-value=0.028 Score=49.60 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 350
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.77 E-value=0.063 Score=51.89 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....+|+|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998875
No 351
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.77 E-value=0.036 Score=50.42 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 188 VEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 188 ~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
++..+.+...+. .....+|+|+|.+|+|||||+..+...
T Consensus 15 ~~~~~~~~~~~~------~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 15 KRLAEKNREALR------ESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHH------HHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc------ccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344455555442 135689999999999999999888764
No 352
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.77 E-value=0.2 Score=47.99 Aligned_cols=24 Identities=42% Similarity=0.332 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..+++|+|.+|+||||++..+...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999888753
No 353
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.76 E-value=0.022 Score=56.03 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=32.2
Q ss_pred CceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 182 GEVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.+++|.+..+..+...+.... ...+.|+|++|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 358999876665544443221 223899999999999999999863
No 354
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.76 E-value=0.029 Score=50.80 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999863
No 355
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.74 E-value=0.032 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
No 356
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.74 E-value=0.035 Score=53.83 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=20.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+||+|.|-|||||||.+-.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 4678999999999999999966653
No 357
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.70 E-value=0.12 Score=52.95 Aligned_cols=42 Identities=33% Similarity=0.464 Sum_probs=28.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCch
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF 251 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 251 (533)
....+++|+|..|+|||||++.+..- .. .....+++.-.+.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl--l~-~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ--FE-QQGKSVMLAAGDTF 332 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEECCCTT
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH--hh-hcCCeEEEecCccc
Confidence 35679999999999999999988753 22 22345555433433
No 358
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.63 E-value=0.038 Score=52.71 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=21.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHh
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAY 230 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~ 230 (533)
....+|+|.|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999887
No 359
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.63 E-value=0.036 Score=49.55 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..-.+|+|+|+.|+||||+++.+.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998875
No 360
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.60 E-value=0.031 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...+|+|.|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999863
No 361
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.56 E-value=0.041 Score=49.85 Aligned_cols=25 Identities=36% Similarity=0.282 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...+|.|.|+.|+||||+++.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998763
No 362
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.48 E-value=0.044 Score=52.80 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....+++|+|+.|+||||+++.+..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3467999999999999999988875
No 363
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.47 E-value=0.032 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...|.|.|++|+||||+|+.+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 364
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.44 E-value=0.039 Score=50.11 Aligned_cols=21 Identities=43% Similarity=0.520 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 365
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=93.44 E-value=0.0077 Score=60.12 Aligned_cols=83 Identities=20% Similarity=0.205 Sum_probs=55.0
Q ss_pred cccceEEEeecCC----cccCCccccccCccceeecccCCCCCC-----CCCccCCCCCCCcceEEeccCCCCC-----C
Q 045152 421 PCLSVLRVYLCPK----LKVLPDYLLQTTTLQKLRILQCPSMEE-----LPILEDHIFLPRLSSLRIEYCPKLK-----L 486 (533)
Q Consensus 421 p~L~~L~l~~c~~----l~~lp~~l~~l~~L~~L~l~~~~~l~~-----lp~~~~~~~l~~L~~L~l~~C~~l~-----~ 486 (533)
+.|+.|++++|.- ...++..+...++|++|+|+++. +.. ++ ..+...++|++|+|++| .|. .
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~--~~L~~~~~L~~L~Ls~N-~i~~~g~~~ 230 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLA--AQLDRNRQLQELNVAYN-GAGDTAALA 230 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHH--HHGGGCSCCCEEECCSS-CCCHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHH--HHHhcCCCcCeEECCCC-CCCHHHHHH
Confidence 4688888887642 12355555667888888888765 432 22 34555678888888886 453 3
Q ss_pred CCcCCCCCCCcceeeccCCch
Q 045152 487 LPDSLLQITTLKELGMEGSPL 507 (533)
Q Consensus 487 lP~~~~~l~~L~~L~~~~c~~ 507 (533)
++..+...++|++|++++|+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHhCCCCCEEeccCCCC
Confidence 444455568888888888874
No 366
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.43 E-value=0.038 Score=49.58 Aligned_cols=23 Identities=30% Similarity=0.250 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...|+|.|+.|+||||+++.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 367
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.41 E-value=0.041 Score=50.32 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=30.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhh----ccCCceEEEEeCCc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSDT 250 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~ 250 (533)
..-.+++|+|+.|+|||||++.+....... ......+|+.....
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 345799999999999999999986421110 12345778775543
No 368
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.39 E-value=0.058 Score=47.70 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.....|+|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34557899999999999999888764
No 369
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.39 E-value=0.04 Score=51.14 Aligned_cols=40 Identities=25% Similarity=0.199 Sum_probs=27.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 248 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 248 (533)
...+++|+|+.|+|||||++.+...... ..-...+++...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~ 68 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEcc
Confidence 4568999999999999999988742111 122345565543
No 370
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.37 E-value=0.026 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=16.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHh
Q 045152 209 LHVISLVGLGGIGKTTLAQLAY 230 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~ 230 (533)
..+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999988
No 371
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.35 E-value=0.047 Score=49.66 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998863
No 372
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.33 E-value=0.042 Score=50.87 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|.|||||.+.+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 345899999999999999999864
No 373
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.30 E-value=0.036 Score=49.36 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
+++|+|+.|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999888753
No 374
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.29 E-value=0.042 Score=49.86 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.|+|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 375
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.29 E-value=0.042 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+++|+|+.|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999864
No 376
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.27 E-value=0.027 Score=59.66 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=65.7
Q ss_pred ccccceEEEeecCCcccCCccccccCccceeecccCCCCCCC-CCccCCCCCCCcceEEeccCCCCCCCCcCCCCCCCcc
Q 045152 420 MPCLSVLRVYLCPKLKVLPDYLLQTTTLQKLRILQCPSMEEL-PILEDHIFLPRLSSLRIEYCPKLKLLPDSLLQITTLK 498 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l-p~~~~~~~l~~L~~L~l~~C~~l~~lP~~~~~l~~L~ 498 (533)
+|.|+.|.++.| .+..+|..+..+++|+.|++.++...... +....+..+++|+.|.++++ ....+|..+..+++|+
T Consensus 219 ~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 219 CRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIR 296 (592)
T ss_dssp CTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCC
T ss_pred CCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCc
Confidence 578899998885 45567877888899999999865443211 11256778899999999884 5677888888899999
Q ss_pred eeeccCCc
Q 045152 499 ELGMEGSP 506 (533)
Q Consensus 499 ~L~~~~c~ 506 (533)
+|++++|.
T Consensus 297 ~L~Ls~~~ 304 (592)
T 3ogk_B 297 KLDLLYAL 304 (592)
T ss_dssp EEEETTCC
T ss_pred EEecCCCc
Confidence 99999998
No 377
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.26 E-value=0.026 Score=49.42 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+++|+|..|.|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 378
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.26 E-value=0.032 Score=51.02 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...|.|.|++|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 379
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.19 E-value=0.042 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+++|+|+.|.|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999864
No 380
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.14 E-value=0.038 Score=50.33 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999875
No 381
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.13 E-value=0.022 Score=51.63 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 382
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.07 E-value=0.09 Score=51.91 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 191 KNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 191 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+.+.+... .+...+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44455555322 24678999999999999999988764
No 383
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.04 E-value=0.32 Score=49.50 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=35.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEG 263 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~ 263 (533)
...++.|.|.+|+||||||..+..+.... +-..++|++.. .+...+...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 45688999999999999998887643221 22357777654 3455666666544
No 384
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.02 E-value=0.056 Score=49.72 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....+|+|.|+.|+|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999999886
No 385
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.00 E-value=0.53 Score=58.10 Aligned_cols=139 Identities=14% Similarity=0.076 Sum_probs=73.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCce
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSASGLSEFESLMKQIQEYITRKK 289 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 289 (533)
+-+.++|++|.|||++|+.+.... ..+ ..+.++.+...+...++..+-..+.......... ..-.-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 578899999999999997766431 122 3455677776666665555544432210000000 000013578
Q ss_pred EEEEEeCCCCCCcccc------chhhhcccCC-----C-------CCceEEEEecchH------HH-hhhCCCCeeeCCC
Q 045152 290 FFLVLDDVWDGDYKKW------NPFFSCLKNG-----H-------HESKILITTRDRS------VA-LQLGSIDIIPVKE 344 (533)
Q Consensus 290 ~LlVLDdv~~~~~~~~------~~l~~~l~~~-----~-------~gs~IiiTtR~~~------v~-~~~~~~~~~~l~~ 344 (533)
.++.+||+.-...+.| +.+...+..+ . .+..+|.++.... +. ........+.++.
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 8999999754433322 2222222211 1 1233444443331 11 1112245688899
Q ss_pred CChHhhHHHHHHhh
Q 045152 345 LAEEECWSLLERLA 358 (533)
Q Consensus 345 L~~~~~~~Lf~~~a 358 (533)
.+.++-..+|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99888888887654
No 386
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.99 E-value=0.042 Score=49.79 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+++|+|+.|.|||||.+.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998875
No 387
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.98 E-value=0.15 Score=60.89 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=54.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC-----CCccHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS-----GLSEFESLMKQI 281 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l 281 (533)
...+++.|+|++|+|||+||.++... ...+=..++|+++...++... ++.++..-. .....++....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 35679999999999999999888763 222334677888777665554 444442211 112334555555
Q ss_pred HHHhC-CceEEEEEeCCC
Q 045152 282 QEYIT-RKKFFLVLDDVW 298 (533)
Q Consensus 282 ~~~l~-~kr~LlVLDdv~ 298 (533)
+...+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 55543 466799999994
No 388
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.95 E-value=0.05 Score=51.59 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+++|+|+.|+|||||.+.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 45899999999999999999864
No 389
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.94 E-value=0.05 Score=50.43 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|.|||||.+.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999975
No 390
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.94 E-value=0.22 Score=50.89 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=33.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
...++.|.|.+|+||||||..+..+.... .-..++|++... +...+...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 45689999999999999998887643222 223577776543 3345555543
No 391
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.92 E-value=0.28 Score=45.06 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=48.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhh-hccC-CceEEEEeCCchhHHHHHHHHHHHhCCCCC---------------CC-
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSDTFEEIRVAKAIIEGLGVSAS---------------GL- 271 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~l~~~il~~l~~~~~---------------~~- 271 (533)
..+.|.|+.|.||||+.....-+... .... ...+.+..........+.+.+...++.... ..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 47899999999999876544322111 1122 223444444444445555555554432210 00
Q ss_pred ----ccHHHHHHHHHHHhCCceEEEEEeCCCC
Q 045152 272 ----SEFESLMKQIQEYITRKKFFLVLDDVWD 299 (533)
Q Consensus 272 ----~~~~~l~~~l~~~l~~kr~LlVLDdv~~ 299 (533)
.+.+.+...+...+.+ --++|+|+++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTT-CCEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcC-CcEEEEECCcc
Confidence 2345555666554433 34789999976
No 392
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.91 E-value=0.052 Score=47.58 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...+++|+|+.|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999988863
No 393
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.91 E-value=0.051 Score=51.17 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|.|||||.+.+..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999864
No 394
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.83 E-value=0.053 Score=47.72 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998863
No 395
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.82 E-value=0.061 Score=53.02 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....+++|+|+.|+||||++..+..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHh
Confidence 3567999999999999999988875
No 396
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.82 E-value=0.06 Score=50.06 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|.|||||.+.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999999864
No 397
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.81 E-value=0.055 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+++|+|+.|.|||||.+.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999964
No 398
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=92.81 E-value=0.13 Score=49.87 Aligned_cols=81 Identities=17% Similarity=0.304 Sum_probs=62.5
Q ss_pred ccccceEEEeecCCcccCCcc-ccccCccceeecccCCCCCCCCCccCCCCCCCcc-eEEeccCCCCCCCC-cCCCCCCC
Q 045152 420 MPCLSVLRVYLCPKLKVLPDY-LLQTTTLQKLRILQCPSMEELPILEDHIFLPRLS-SLRIEYCPKLKLLP-DSLLQITT 496 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~-~L~l~~C~~l~~lP-~~~~~l~~ 496 (533)
.+.|+.+.+.. ..+..+|++ +..+.+|+.|++.+ ++..++. ..+..+++|+ .|.|.+ +++.++ ..+.++++
T Consensus 225 ~~~L~~l~L~~-n~i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~-~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISK-TNATTIPDFTFAQKKYLLKIKLPH--NLKTIGQ-RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTT-BCCCEECTTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCC-CCcceecHhhhhCCCCCCEEECCc--ccceehH-HHhhCChhccEEEEEcc--cceEEchhhhhCCcc
Confidence 46788888876 347778766 55688999999985 4888885 4577788999 999977 788887 56888999
Q ss_pred cceeeccCCc
Q 045152 497 LKELGMEGSP 506 (533)
Q Consensus 497 L~~L~~~~c~ 506 (533)
|++|+++++.
T Consensus 299 L~~l~l~~n~ 308 (329)
T 3sb4_A 299 LRYVLATGDK 308 (329)
T ss_dssp EEEEEECSSC
T ss_pred CCEEEeCCCc
Confidence 9999986543
No 399
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.78 E-value=0.056 Score=48.54 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998875
No 400
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.77 E-value=0.08 Score=52.22 Aligned_cols=55 Identities=15% Similarity=0.019 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCc-eEEEEeCCch
Q 045152 191 KNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK-VIWVCVSDTF 251 (533)
Q Consensus 191 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~ 251 (533)
--++++.|..- ....-++|+|.+|+|||+|+..+.+.... .+-+. ++++-+.+..
T Consensus 162 GiraID~l~Pi-----grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~-~~~dv~~V~~lIGER~ 217 (427)
T 3l0o_A 162 STRLIDLFAPI-----GKGQRGMIVAPPKAGKTTILKEIANGIAE-NHPDTIRIILLIDERP 217 (427)
T ss_dssp HHHHHHHHSCC-----BTTCEEEEEECTTCCHHHHHHHHHHHHHH-HCTTSEEEEEECSCCH
T ss_pred cchhhhhcccc-----cCCceEEEecCCCCChhHHHHHHHHHHhh-cCCCeEEEEEEeccCc
Confidence 34677777543 34568899999999999999888874221 12232 3556666543
No 401
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.72 E-value=0.056 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+++|+|+.|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999964
No 402
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.72 E-value=0.057 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+++|+|+.|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999864
No 403
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.68 E-value=0.078 Score=45.67 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 404
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.67 E-value=0.058 Score=50.80 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|.|||||.+.+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 345899999999999999999864
No 405
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.67 E-value=0.06 Score=50.31 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+++|+|+.|.|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999876
No 406
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.65 E-value=0.048 Score=50.90 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|+|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 407
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.65 E-value=0.05 Score=49.52 Aligned_cols=23 Identities=39% Similarity=0.509 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+++|+|+.|.|||||.+.+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999875
No 408
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.63 E-value=0.072 Score=51.77 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+|.|+|+.|+||||||..+..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999886
No 409
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.62 E-value=0.13 Score=54.22 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+++.|.|.+|.||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5888999999999999988875
No 410
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.62 E-value=0.078 Score=49.61 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....++.++|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3567899999999999999988874
No 411
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.62 E-value=0.06 Score=50.19 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+++|+|+.|.|||||.+.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999864
No 412
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.62 E-value=0.06 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+++|+|+.|.|||||.+.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999975
No 413
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.60 E-value=0.057 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 414
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.60 E-value=0.14 Score=47.05 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
....|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 415
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.59 E-value=0.061 Score=52.42 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998876
No 416
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.57 E-value=0.062 Score=49.50 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|.|.|++|.||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 417
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.55 E-value=0.077 Score=47.06 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..-.|+|+|..|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567899999999999999988754
No 418
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.53 E-value=0.076 Score=47.59 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 191 KNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 191 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
+..+..++.. -+....+.|+|++|.||||+|..+.+.
T Consensus 45 ~~~l~~~~~~-----iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG-----TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT-----CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 4555565532 133456999999999999999888763
No 419
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.52 E-value=0.057 Score=49.00 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.|.|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999875
No 420
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.51 E-value=0.063 Score=50.34 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|.|||||.+.+..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999964
No 421
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.49 E-value=0.064 Score=50.64 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|.|||||.+.+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999876
No 422
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.47 E-value=0.42 Score=47.66 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=31.6
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.++|....+.++.+.+..... ... .|.|.|..|+|||++|+.+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~-~vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AEC-PVLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCS-CEEEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCC-CeEEecCCCcCHHHHHHHHHH
Confidence 456666667777666543321 223 348999999999999999986
No 423
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.45 E-value=0.078 Score=49.86 Aligned_cols=110 Identities=12% Similarity=0.151 Sum_probs=54.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC-chhHHHHHHHHHH--HhCCCCCCCccHHHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIE--GLGVSASGLSEFESLMKQIQEY 284 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~il~--~l~~~~~~~~~~~~l~~~l~~~ 284 (533)
...+++|+|+.|.|||||.+.+..- +...+...+++.-.. .+-.... ..++. .++.. .. .+...+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl~---~~---~l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGED---TK---SFADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTTT---BS---CHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCCC---HH---HHHHHHHHH
Confidence 4569999999999999999988752 222223334332110 0000000 00000 00000 11 223455555
Q ss_pred hCCceEEEEEeCCCCCCccccchhhhcccCCCCCceEEEEecchHHH
Q 045152 285 ITRKKFFLVLDDVWDGDYKKWNPFFSCLKNGHHESKILITTRDRSVA 331 (533)
Q Consensus 285 l~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTtR~~~v~ 331 (533)
+..++=++++|+.- +.+....+.... ..|.-|++||....+.
T Consensus 95 L~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 95 LREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 55566688899985 222222222221 2366688888765543
No 424
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.43 E-value=0.065 Score=50.73 Aligned_cols=24 Identities=46% Similarity=0.530 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|.|||||.+.+..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999964
No 425
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.40 E-value=0.066 Score=49.95 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+++|+|+.|.|||||.+.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999865
No 426
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.40 E-value=0.064 Score=50.45 Aligned_cols=23 Identities=43% Similarity=0.616 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+++|+|+.|.|||||.+.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999865
No 427
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.36 E-value=0.066 Score=47.79 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999988764
No 428
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.31 E-value=0.071 Score=53.89 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999999999999998863
No 429
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.31 E-value=0.073 Score=51.12 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35889999999999999998875
No 430
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.30 E-value=0.067 Score=49.30 Aligned_cols=23 Identities=30% Similarity=0.164 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...|.|.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999976
No 431
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.29 E-value=0.078 Score=45.05 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999888754
No 432
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.29 E-value=0.069 Score=50.38 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|.|||||.+.+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 345899999999999999999864
No 433
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.25 E-value=0.069 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+++|+|+.|.|||||.+.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 434
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.23 E-value=0.17 Score=41.82 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=35.0
Q ss_pred CCC--CCCCccCCCCCCCcceEEeccCCCCCCCCcC-CCCCCCcceeeccCCch
Q 045152 457 SME--ELPILEDHIFLPRLSSLRIEYCPKLKLLPDS-LLQITTLKELGMEGSPL 507 (533)
Q Consensus 457 ~l~--~lp~~~~~~~l~~L~~L~l~~C~~l~~lP~~-~~~l~~L~~L~~~~c~~ 507 (533)
+|. .+| ..+ -++|++|+|++ .+|..||.+ +..+++|++|+++++|.
T Consensus 19 ~L~~~~vP--~~l--p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 19 GLTWASLP--TAF--PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CCCTTTSC--SCC--CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCccccCC--CCC--CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 355 677 333 35799999998 789999865 56788999999988873
No 435
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.21 E-value=0.25 Score=45.09 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=34.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 262 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 262 (533)
.....|.|.|+.|+||||+++.+.+.......+.......-+......+.+++++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 35678999999999999999999874322133444432333333333444555554
No 436
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.21 E-value=0.069 Score=51.32 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+...+++|+|+.|.|||||++.+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3456899999999999999998874
No 437
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.20 E-value=0.071 Score=50.65 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+++|+|+.|.|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999864
No 438
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.19 E-value=0.065 Score=57.09 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=34.0
Q ss_pred ceeechhhHHHHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 183 EVCGRVEEKNELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 183 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.++|.+.-++.+...+... ..+.|+|++|+||||||+.+..
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 5899888888777777432 4789999999999999999986
No 439
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.18 E-value=0.083 Score=50.61 Aligned_cols=24 Identities=33% Similarity=0.212 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+|.|+|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999998875
No 440
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.18 E-value=0.073 Score=51.50 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+|.|+|+.|+||||||..+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998875
No 441
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.16 E-value=0.073 Score=51.09 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999875
No 442
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.16 E-value=0.11 Score=48.01 Aligned_cols=41 Identities=29% Similarity=0.289 Sum_probs=28.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 250 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 250 (533)
...++.|.|++|+||||||..+.... ...-..++|++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEEH 62 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccCC
Confidence 44689999999999999997775432 122346777775543
No 443
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.08 E-value=0.041 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=18.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+..+|+|.|+.|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998875
No 444
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.07 E-value=0.1 Score=45.85 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999998864
No 445
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.00 E-value=0.52 Score=48.78 Aligned_cols=54 Identities=17% Similarity=0.027 Sum_probs=36.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHh
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGL 264 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l 264 (533)
...++.|.|.+|+||||||..+..+... .+=..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~-~~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGT-AMGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTT-TSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHH-hcCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 4568899999999999999887754222 1123577776544 4556666665443
No 446
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.99 E-value=0.3 Score=49.79 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=56.7
Q ss_pred HHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHH-HHHhcchhhhccCC-ceEEEEeCCch-hHHHHHHHHHHHhCCC--
Q 045152 193 ELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLA-QLAYNNDEVKRNFE-KVIWVCVSDTF-EEIRVAKAIIEGLGVS-- 267 (533)
Q Consensus 193 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~l~~~il~~l~~~-- 267 (533)
+.++.|..- .+..-++|+|..|+|||+|| ..+.+.. +-+ .++++-+.+.. .+.++.+++...-...
T Consensus 151 raID~l~Pi-----grGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPI-----GRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCC-----BTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eeccccccc-----ccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 556666533 34567899999999999996 5777642 345 35677777655 4556666665432111
Q ss_pred -----CCCCccHHH-----HHHHHHHHh--CCceEEEEEeCC
Q 045152 268 -----ASGLSEFES-----LMKQIQEYI--TRKKFFLVLDDV 297 (533)
Q Consensus 268 -----~~~~~~~~~-----l~~~l~~~l--~~kr~LlVLDdv 297 (533)
..+...... ....+.+++ .++.+|+++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 111111111 112233333 578999999998
No 447
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.98 E-value=0.071 Score=45.37 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988754
No 448
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.96 E-value=0.11 Score=45.02 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999988764
No 449
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.96 E-value=0.42 Score=48.61 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=33.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEG 263 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~ 263 (533)
...++.|.|.+|+||||||..+..+.... =..++|++.. .+...+...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHH
Confidence 45689999999999999998877643222 2356666543 3344555555543
No 450
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.92 E-value=0.1 Score=52.83 Aligned_cols=42 Identities=38% Similarity=0.335 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCc---cCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 191 KNELLSKLLCESS---EQQKGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 191 ~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.+++.+.+..... -......+|.|+|.+|+||||++..+...
T Consensus 78 ~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 78 YEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp HHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4555665543211 01134679999999999999999887753
No 451
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.88 E-value=0.14 Score=51.93 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=34.4
Q ss_pred CceeechhhHHHHHHHHhCC--------CccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 182 GEVCGRVEEKNELLSKLLCE--------SSEQQKGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 182 ~~~vGR~~e~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..++|-++-++.+...+... ........+-|.++|++|+||||+|+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35788888777776655221 000012345689999999999999999876
No 452
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.87 E-value=0.32 Score=44.01 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...|.|.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999863
No 453
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.85 E-value=0.079 Score=50.08 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998875
No 454
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.78 E-value=0.088 Score=48.59 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998875
No 455
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.72 E-value=0.11 Score=44.44 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.--|.|+|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999988764
No 456
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.65 E-value=0.1 Score=46.44 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...|.|.|+.|+||||||..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999888763
No 457
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.60 E-value=0.13 Score=44.31 Aligned_cols=24 Identities=42% Similarity=0.549 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.--|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999988764
No 458
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.52 E-value=0.095 Score=49.29 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..+++|+|+.|.|||||.+.+..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999975
No 459
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.52 E-value=0.39 Score=49.02 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=56.4
Q ss_pred HHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHH-HHHhcchhhhccCC-ceEEEEeCCch-hHHHHHHHHHHHhCC---
Q 045152 193 ELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLA-QLAYNNDEVKRNFE-KVIWVCVSDTF-EEIRVAKAIIEGLGV--- 266 (533)
Q Consensus 193 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~l~~~il~~l~~--- 266 (533)
+.++.|..- .+..-++|+|..|+|||+|| ..+.+.. ..+ .++++-+.+.. .+.++.+.+...=..
T Consensus 164 raID~l~Pi-----grGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPI-----GRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCE-----ETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred ccccccccc-----ccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 556666433 34567899999999999996 5777642 345 35677777654 455666666542111
Q ss_pred ----CCCCCccHHH-----HHHHHHHHh--CCceEEEEEeCC
Q 045152 267 ----SASGLSEFES-----LMKQIQEYI--TRKKFFLVLDDV 297 (533)
Q Consensus 267 ----~~~~~~~~~~-----l~~~l~~~l--~~kr~LlVLDdv 297 (533)
...+...... ....+.+++ .++.+|+++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 1111111111 112233333 578999999998
No 460
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.48 E-value=0.099 Score=44.85 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988764
No 461
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.48 E-value=0.09 Score=44.97 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
-|+|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988653
No 462
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.48 E-value=0.076 Score=51.15 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 346899999999999999999864
No 463
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.47 E-value=0.1 Score=44.81 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999998864
No 464
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.44 E-value=0.097 Score=46.06 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
--|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999988754
No 465
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.43 E-value=0.091 Score=51.00 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|.|||||.+.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 478999999999999999999885
No 466
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.42 E-value=0.095 Score=44.73 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..-|+|+|.+|+|||||...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999888754
No 467
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.42 E-value=0.1 Score=45.84 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045152 211 VISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+.+|+|+.|.|||||+..++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999998863
No 468
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.42 E-value=0.27 Score=45.30 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=32.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHH
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 261 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 261 (533)
...|.|.|+.|+||||+++.+.+... ..++..+....-.......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 46899999999999999999987422 23455344444333333334444444
No 469
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.40 E-value=0.1 Score=51.89 Aligned_cols=25 Identities=28% Similarity=0.131 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
+...+++|+|+.|.|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3456999999999999999999985
No 470
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.39 E-value=0.095 Score=49.72 Aligned_cols=24 Identities=38% Similarity=0.333 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...++.|+|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999988875
No 471
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=91.39 E-value=0.018 Score=57.42 Aligned_cols=84 Identities=21% Similarity=0.150 Sum_probs=55.9
Q ss_pred ccccceEEEeecCCcc----cCCccc-cccCccceeecccCCCCCC-----CCCccCCCCCCCcceEEeccCCCCC----
Q 045152 420 MPCLSVLRVYLCPKLK----VLPDYL-LQTTTLQKLRILQCPSMEE-----LPILEDHIFLPRLSSLRIEYCPKLK---- 485 (533)
Q Consensus 420 lp~L~~L~l~~c~~l~----~lp~~l-~~l~~L~~L~l~~~~~l~~-----lp~~~~~~~l~~L~~L~l~~C~~l~---- 485 (533)
++.|+.|++++|.--. .+...+ ....+|++|++++|. +.. ++ ..+..+++|++|+|++|. |.
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~--~~L~~~~~L~~L~Ls~N~-l~~~g~ 200 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLM--EGLAGNTSVTHLSLLHTG-LGDEGL 200 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHH--HHHHTCSSCCEEECTTSS-CHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHH--HHHhcCCCcCEEeCCCCC-CCcHHH
Confidence 3467888888863221 122222 134789999999875 533 33 334567899999999964 54
Q ss_pred -CCCcCCCCCCCcceeeccCCch
Q 045152 486 -LLPDSLLQITTLKELGMEGSPL 507 (533)
Q Consensus 486 -~lP~~~~~l~~L~~L~~~~c~~ 507 (533)
.++..+.+.++|++|++++|..
T Consensus 201 ~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 201 ELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHHHHHHhcCCCcCeEECCCCCC
Confidence 3455667788999999999874
No 472
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.34 E-value=0.12 Score=45.74 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988764
No 473
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.30 E-value=0.098 Score=50.08 Aligned_cols=52 Identities=21% Similarity=0.180 Sum_probs=32.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeCCchhHHHHHHHHHHH
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEEIRVAKAIIEG 263 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~il~~ 263 (533)
...+++|+|++|+|||||+..+...... ... .++|+.... +...+...+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcC--CHHHHHHHHHHH
Confidence 4468999999999999999888764222 222 456665433 333444444433
No 474
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.28 E-value=0.1 Score=44.63 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988754
No 475
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.26 E-value=0.1 Score=45.36 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998764
No 476
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.24 E-value=0.1 Score=44.84 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..--|+|+|.+|+|||||...+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999888754
No 477
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.17 E-value=0.1 Score=44.63 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
-|.|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888754
No 478
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.16 E-value=0.14 Score=44.90 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...-|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998764
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.15 E-value=0.11 Score=48.07 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...|.|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 367999999999999999998863
No 480
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.13 E-value=0.1 Score=44.40 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999888754
No 481
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.09 E-value=0.11 Score=44.63 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999888764
No 482
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.06 E-value=0.34 Score=57.88 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=56.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHHHhCCCCC-----CCccHHHHHHHH
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGVSAS-----GLSEFESLMKQI 281 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l 281 (533)
....++.|.|++|+||||||.++.... ...-..++|++....++.. .++.++.... ...+.+++...+
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 356799999999999999998887642 2223468888877766543 1455554321 123456666666
Q ss_pred HHHh-CCceEEEEEeCCCC
Q 045152 282 QEYI-TRKKFFLVLDDVWD 299 (533)
Q Consensus 282 ~~~l-~~kr~LlVLDdv~~ 299 (533)
+... ..+.-+||+|-+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 5544 34566999998843
No 483
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.02 E-value=0.1 Score=49.81 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
...+++|+|+.|.|||||.+.+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 345899999999999999999975
No 484
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.02 E-value=0.14 Score=44.45 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
....-|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999888754
No 485
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.99 E-value=0.11 Score=45.78 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=20.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..--|+|+|.+|+|||||...+.+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999877653
No 486
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.97 E-value=0.1 Score=45.74 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..--|+|+|.+|+|||||...+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999888764
No 487
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.96 E-value=0.12 Score=46.75 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
.....|.|+|.+|+|||||+..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999888764
No 488
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.94 E-value=0.36 Score=43.74 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=33.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCchhHHHHHHHHHH
Q 045152 210 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 262 (533)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 262 (533)
..|.+.|+.|+||||+++.+.+... ...+..+.+..-.......+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE-QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 4789999999999999999987422 233433444443333344455555554
No 489
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.92 E-value=0.11 Score=45.48 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 045152 211 VISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999988764
No 490
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.91 E-value=0.59 Score=47.78 Aligned_cols=100 Identities=15% Similarity=0.189 Sum_probs=57.4
Q ss_pred HHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHH-HHHhcchhh----hccCC-ceEEEEeCCch-hHHHHHHHHHHHhC
Q 045152 193 ELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLA-QLAYNNDEV----KRNFE-KVIWVCVSDTF-EEIRVAKAIIEGLG 265 (533)
Q Consensus 193 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~----~~~F~-~~~wv~vs~~~-~~~~l~~~il~~l~ 265 (533)
+.++.|..- .+..-++|+|..|+|||+|| ..+.+.... ..+-+ .++++-+.+.. .+.++.+.+...=.
T Consensus 151 raID~l~Pi-----grGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPI-----GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCC-----BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeecccccc-----ccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 556666543 34567899999999999995 567664321 01244 46777777655 45566666654211
Q ss_pred C-------CCCCCccHHH-----HHHHHHHHh--CCceEEEEEeCC
Q 045152 266 V-------SASGLSEFES-----LMKQIQEYI--TRKKFFLVLDDV 297 (533)
Q Consensus 266 ~-------~~~~~~~~~~-----l~~~l~~~l--~~kr~LlVLDdv 297 (533)
. ...+...... ....+.+++ .++.+|+++||+
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 1 0111111111 112233333 578999999998
No 491
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.91 E-value=0.13 Score=49.43 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=26.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 248 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 248 (533)
...++|+|+|-||+||||+|..+... ....=..++-|...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D 78 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCD 78 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEES
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCC
Confidence 46788999999999999999777642 22222245555554
No 492
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.90 E-value=0.11 Score=45.88 Aligned_cols=24 Identities=33% Similarity=0.232 Sum_probs=19.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
..--|+|+|.+|+|||||.+.+.+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHh
Confidence 345688999999999999977764
No 493
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.87 E-value=0.16 Score=43.93 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
....-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999888764
No 494
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.87 E-value=0.11 Score=44.88 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..--|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4556899999999999999888754
No 495
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.85 E-value=0.87 Score=47.15 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=41.3
Q ss_pred HHHHHHhCCCccCCCCeEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-hhHHHHHHHH
Q 045152 193 ELLSKLLCESSEQQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEEIRVAKAI 260 (533)
Q Consensus 193 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i 260 (533)
+.++.|..- .+-.-++|+|..|+|||+|+..+.+. .+-+.++++-+.+. ..+.++++++
T Consensus 221 rvID~l~Pi-----grGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPV-----TKGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCC-----BTTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCc-----cCCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 566777543 34568899999999999999988763 23456788877765 3444555443
No 496
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.84 E-value=0.29 Score=48.38 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...+|+|+|.+|+|||||...+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 4567999999999999999998865
No 497
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.82 E-value=0.11 Score=44.19 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 045152 212 ISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~ 232 (533)
|+|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999888653
No 498
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.81 E-value=0.14 Score=50.35 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 045152 207 KGLHVISLVGLGGIGKTTLAQLAYN 231 (533)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (533)
....+|+|+|.+|+|||||...+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3478999999999999999998875
No 499
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.79 E-value=0.28 Score=44.87 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=18.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 045152 209 LHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
...|.|.|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 500
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.78 E-value=0.12 Score=45.64 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 045152 208 GLHVISLVGLGGIGKTTLAQLAYNN 232 (533)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (533)
..--|+|+|.+|+|||||...+...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3456889999999999999888754
Done!