BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045155
(582 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 77 KSCELLSQL--PSSMPL-DSGIYAQSLISNQPRWLNFSNSADLEVMEE 121
K+C+ LS + P S+ L +SG + S I+ P WL+ N+ D + +
Sbjct: 330 KNCKALSTISYPKSITLIESGAFEGSSITKYPTWLSKGNNGDYGIFTK 377
>pdb|4H10|A Chain A, Intermolecular Recognition Revealed By The Complex
Structure Of Human Clock-bmal1 Basic Helix-loop-helix
Domains With E-box Dna
Length = 73
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 323 RNGKEPQSKNLVAERKRRKKLNDRLYALRALVPIIT----KLDRATILVDAIEYV 373
+N +E S+ E++RR K+N + L +LVP KLD+ T+L A++++
Sbjct: 7 KNAREAHSQ---IEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHM 58
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 121 ETLWTRVLIPIMGGLIELFATKEVSEDPHVIDFIIAQCNISMEQDPMNMNTSCYLDNASS 180
ETL RV + G EL K+ DP +DF+ + N+ M MNM + + + +
Sbjct: 327 ETL--RVHLAEKGDGAELIWDKD---DPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAG 381
Query: 181 SVNVHAMALENSDVPYDLSVDRIRICSG 208
++ + A+A N+ + + ++ ++I SG
Sbjct: 382 NI-IPAIATTNAVIAGLIVLEGLKILSG 408
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 121 ETLWTRVLIPIMGGLIELFATKEVSEDPHVIDFIIAQCNISMEQDPMNMNTSCYLDNASS 180
ETL RV + G EL K+ DP +DF+ + N+ M MNM + + + +
Sbjct: 347 ETL--RVHLAEKGDGAELIWDKD---DPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAG 401
Query: 181 SVNVHAMALENSDVPYDLSVDRIRICSG 208
++ + A+A N+ + + ++ ++I SG
Sbjct: 402 NI-IPAIATTNAVIAGLIVLEGLKILSG 428
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 146 EDPHVIDFIIAQCNISMEQDPMNMNTSCYLDNASSSVNVHAMALENSDVPYDLSVDRIRI 205
+DP +DF+ + N+ M MNM + + + + ++ + A+A N+ + + ++ ++I
Sbjct: 349 DDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNI-IPAIATTNAVIAGLIVLEGLKI 407
Query: 206 CSG 208
SG
Sbjct: 408 LSG 410
>pdb|4F3L|B Chain B, Crystal Structure Of The Heterodimeric Clock:bmal1
Transcriptional Activator Complex
Length = 387
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 323 RNGKEPQSKNLVAERKRRKKLNDRLYALRALVPIIT----KLDRATILVDAIEYV 373
+N +E S+ E++RR K+N + L +LVP KLD+ T+L A++++
Sbjct: 11 KNAREAHSQ---IEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHM 62
>pdb|4ATI|A Chain A, Mitf:m-Box Complex
pdb|4ATI|B Chain B, Mitf:m-Box Complex
pdb|4ATK|A Chain A, Mitf:e-Box Complex
pdb|4ATK|B Chain B, Mitf:e-Box Complex
Length = 118
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 322 RRNGKEPQSK---NLVAERKRRKKLNDRLYALRALVPIITKLD----RATILVDAIEYV 373
R KE Q K NL+ ER+RR +NDR+ L L+P D + TIL +++Y+
Sbjct: 19 RALAKERQKKDNHNLI-ERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYI 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,444,049
Number of Sequences: 62578
Number of extensions: 598683
Number of successful extensions: 1175
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1175
Number of HSP's gapped (non-prelim): 7
length of query: 582
length of database: 14,973,337
effective HSP length: 104
effective length of query: 478
effective length of database: 8,465,225
effective search space: 4046377550
effective search space used: 4046377550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)