Query 045155
Match_columns 582
No_of_seqs 321 out of 1292
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 10:23:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14215 bHLH-MYC_N: bHLH-MYC 100.0 5.8E-41 1.2E-45 319.7 10.8 148 7-158 1-163 (163)
2 cd00083 HLH Helix-loop-helix d 99.2 1.6E-11 3.4E-16 97.5 5.1 54 328-381 4-60 (60)
3 smart00353 HLH helix loop heli 99.2 4.5E-11 9.8E-16 92.9 6.2 49 333-381 1-52 (53)
4 PF00010 HLH: Helix-loop-helix 99.2 2.2E-11 4.9E-16 95.8 4.3 49 329-377 2-55 (55)
5 KOG1319 bHLHZip transcription 99.1 5E-11 1.1E-15 114.1 3.6 99 294-392 28-133 (229)
6 KOG1318 Helix loop helix trans 98.6 3E-08 6.6E-13 106.5 5.9 56 327-382 232-291 (411)
7 cd04897 ACT_ACR_3 ACT domain-c 98.4 2.2E-06 4.9E-11 72.2 9.4 67 470-536 3-73 (75)
8 cd04895 ACT_ACR_1 ACT domain-c 98.4 3.3E-06 7.2E-11 70.6 9.9 67 470-536 3-69 (72)
9 cd04896 ACT_ACR-like_3 ACT dom 98.2 1E-05 2.2E-10 68.2 10.0 68 470-538 2-75 (75)
10 cd04927 ACT_ACR-like_2 Second 98.2 1.2E-05 2.6E-10 67.6 9.5 69 469-537 1-73 (76)
11 cd04900 ACT_UUR-like_1 ACT dom 98.2 2E-05 4.4E-10 65.3 10.2 67 470-536 3-70 (73)
12 KOG2483 Upstream transcription 98.0 1.5E-05 3.2E-10 80.6 8.3 69 323-391 54-125 (232)
13 KOG3561 Aryl-hydrocarbon recep 98.0 7.3E-06 1.6E-10 94.8 5.6 51 329-379 21-75 (803)
14 cd04925 ACT_ACR_2 ACT domain-c 97.9 8.2E-05 1.8E-09 62.0 9.2 67 470-536 2-73 (74)
15 KOG4304 Transcriptional repres 97.8 1.1E-05 2.3E-10 82.7 3.6 55 328-382 32-94 (250)
16 cd04899 ACT_ACR-UUR-like_2 C-t 97.7 0.00031 6.8E-09 56.7 9.7 65 470-535 2-66 (70)
17 cd04928 ACT_TyrKc Uncharacteri 97.7 0.00043 9.2E-09 57.4 9.7 64 470-535 3-67 (68)
18 KOG2588 Predicted DNA-binding 97.7 4.6E-05 9.9E-10 88.6 5.3 66 326-391 274-340 (953)
19 cd04926 ACT_ACR_4 C-terminal 97.5 0.00095 2.1E-08 55.3 9.9 66 470-536 3-68 (72)
20 PLN03217 transcription factor 97.5 0.00027 5.8E-09 60.4 6.0 52 341-392 20-77 (93)
21 KOG0561 bHLH transcription fac 97.4 0.0001 2.2E-09 76.1 2.7 52 332-383 64-117 (373)
22 PF13740 ACT_6: ACT domain; PD 97.1 0.0036 7.8E-08 52.3 8.6 66 468-536 2-67 (76)
23 PRK05007 PII uridylyl-transfer 97.0 0.0033 7.1E-08 75.2 11.3 80 457-536 796-879 (884)
24 cd04873 ACT_UUR-ACR-like ACT d 97.0 0.0071 1.5E-07 48.3 9.8 66 470-536 2-67 (70)
25 PRK00275 glnD PII uridylyl-tra 96.9 0.007 1.5E-07 72.5 12.3 82 457-538 802-888 (895)
26 cd04893 ACT_GcvR_1 ACT domains 96.8 0.012 2.6E-07 49.3 9.4 65 469-536 2-66 (77)
27 PRK04374 PII uridylyl-transfer 96.7 0.012 2.7E-07 70.2 12.7 81 456-536 783-867 (869)
28 PF01842 ACT: ACT domain; Int 96.7 0.0056 1.2E-07 48.3 6.8 63 470-534 2-64 (66)
29 KOG4029 Transcription factor H 96.7 0.0014 2.9E-08 66.3 4.0 60 327-386 108-171 (228)
30 cd04872 ACT_1ZPV ACT domain pr 96.6 0.01 2.2E-07 50.7 8.1 68 469-537 2-69 (88)
31 PRK01759 glnD PII uridylyl-tra 96.5 0.011 2.3E-07 70.6 10.4 79 457-535 771-853 (854)
32 PRK00194 hypothetical protein; 96.5 0.013 2.9E-07 50.1 8.3 69 468-537 3-71 (90)
33 cd04869 ACT_GcvR_2 ACT domains 96.5 0.022 4.8E-07 47.3 9.4 65 471-537 2-72 (81)
34 PRK03381 PII uridylyl-transfer 96.5 0.02 4.2E-07 67.7 11.9 72 467-538 598-669 (774)
35 PRK05092 PII uridylyl-transfer 96.5 0.018 3.8E-07 69.4 11.7 82 456-537 830-916 (931)
36 KOG3960 Myogenic helix-loop-he 96.4 0.0066 1.4E-07 61.6 6.4 64 327-390 117-182 (284)
37 cd04875 ACT_F4HF-DF N-terminal 96.4 0.023 4.9E-07 46.9 8.4 68 470-537 1-69 (74)
38 COG2844 GlnD UTP:GlnB (protein 96.2 0.016 3.4E-07 67.5 9.0 81 455-536 777-858 (867)
39 cd04870 ACT_PSP_1 CT domains f 96.2 0.03 6.5E-07 46.5 8.5 66 470-537 1-66 (75)
40 PF13291 ACT_4: ACT domain; PD 96.2 0.016 3.4E-07 48.4 6.7 52 468-519 6-59 (80)
41 TIGR01693 UTase_glnD [Protein- 96.2 0.025 5.4E-07 67.5 10.7 72 467-538 667-743 (850)
42 PRK03381 PII uridylyl-transfer 96.1 0.029 6.3E-07 66.3 11.0 65 468-534 707-771 (774)
43 PRK03059 PII uridylyl-transfer 96.1 0.033 7.1E-07 66.6 11.5 79 457-535 774-854 (856)
44 PRK05007 PII uridylyl-transfer 95.9 0.045 9.7E-07 65.7 11.3 73 466-538 699-775 (884)
45 PRK01759 glnD PII uridylyl-tra 95.9 0.045 9.8E-07 65.4 11.2 72 467-538 676-751 (854)
46 TIGR01693 UTase_glnD [Protein- 95.8 0.044 9.6E-07 65.4 10.8 77 457-533 767-847 (850)
47 cd04887 ACT_MalLac-Enz ACT_Mal 95.7 0.055 1.2E-06 44.1 7.7 60 471-532 2-62 (74)
48 cd04886 ACT_ThrD-II-like C-ter 95.4 0.084 1.8E-06 41.8 7.7 47 471-517 1-52 (73)
49 PRK00275 glnD PII uridylyl-tra 95.4 0.075 1.6E-06 63.8 10.4 72 467-538 703-780 (895)
50 KOG3910 Helix loop helix trans 95.1 0.018 3.9E-07 63.3 3.5 58 325-382 523-584 (632)
51 cd04894 ACT_ACR-like_1 ACT dom 95.0 0.13 2.7E-06 42.2 7.4 65 470-534 2-67 (69)
52 PRK03059 PII uridylyl-transfer 95.0 0.11 2.4E-06 62.2 10.2 72 467-538 677-752 (856)
53 PRK05092 PII uridylyl-transfer 94.6 0.21 4.6E-06 60.3 11.4 71 467-537 731-806 (931)
54 cd04888 ACT_PheB-BS C-terminal 94.4 0.18 3.9E-06 41.1 7.2 62 470-532 2-64 (76)
55 PRK04374 PII uridylyl-transfer 94.3 0.22 4.7E-06 59.8 10.3 72 467-538 689-762 (869)
56 PRK04435 hypothetical protein; 93.8 0.29 6.3E-06 46.4 8.3 68 464-532 65-133 (147)
57 cd04877 ACT_TyrR N-terminal AC 93.3 0.23 4.9E-06 41.0 6.0 46 470-518 2-47 (74)
58 cd04876 ACT_RelA-SpoT ACT dom 93.3 0.45 9.8E-06 36.1 7.3 48 471-518 1-49 (71)
59 cd02116 ACT ACT domains are co 93.2 0.48 1E-05 33.9 7.0 35 471-505 1-35 (60)
60 cd04881 ACT_HSDH-Hom ACT_HSDH_ 93.1 0.67 1.5E-05 37.1 8.3 48 469-516 1-50 (79)
61 PRK13011 formyltetrahydrofolat 92.4 0.76 1.6E-05 48.3 9.6 72 468-539 7-78 (286)
62 PRK06027 purU formyltetrahydro 92.3 0.95 2.1E-05 47.5 10.2 73 468-541 6-80 (286)
63 cd04874 ACT_Af1403 N-terminal 92.0 0.99 2.1E-05 35.6 7.9 43 470-512 2-45 (72)
64 PRK08577 hypothetical protein; 91.7 1.3 2.7E-05 41.2 9.3 66 467-533 55-122 (136)
65 cd04880 ACT_AAAH-PDT-like ACT 91.6 1.2 2.5E-05 36.7 8.1 46 473-518 4-50 (75)
66 TIGR00655 PurU formyltetrahydr 91.2 1.4 3E-05 46.2 10.0 70 470-540 2-73 (280)
67 PRK13010 purU formyltetrahydro 91.1 0.95 2.1E-05 47.6 8.7 76 468-543 9-86 (289)
68 cd04905 ACT_CM-PDT C-terminal 91.0 2.2 4.7E-05 35.6 9.2 63 471-535 4-67 (80)
69 cd04878 ACT_AHAS N-terminal AC 90.6 1.4 3E-05 34.5 7.4 47 470-516 2-50 (72)
70 cd04879 ACT_3PGDH-like ACT_3PG 90.4 1.5 3.3E-05 34.1 7.4 58 471-533 2-61 (71)
71 cd04882 ACT_Bt0572_2 C-termina 90.3 1.2 2.5E-05 34.9 6.7 56 471-533 2-59 (65)
72 cd04903 ACT_LSD C-terminal ACT 90.2 1.5 3.2E-05 34.4 7.2 58 471-533 2-61 (71)
73 cd04908 ACT_Bt0572_1 N-termina 90.2 2.1 4.7E-05 34.3 8.2 45 470-516 3-47 (66)
74 cd04884 ACT_CBS C-terminal ACT 89.7 2 4.3E-05 35.0 7.8 46 471-516 2-50 (72)
75 cd04909 ACT_PDH-BS C-terminal 89.6 1.9 4.1E-05 34.6 7.4 35 470-504 3-37 (69)
76 PRK07334 threonine dehydratase 89.5 1.4 3E-05 48.2 8.7 53 466-518 324-381 (403)
77 KOG4447 Transcription factor T 88.7 0.26 5.6E-06 46.9 2.0 51 329-379 79-131 (173)
78 cd04883 ACT_AcuB C-terminal AC 87.4 6.2 0.00014 31.6 9.2 59 470-533 3-63 (72)
79 PRK11589 gcvR glycine cleavage 86.4 2 4.4E-05 42.6 6.8 67 467-536 7-73 (190)
80 COG3830 ACT domain-containing 86.3 1.5 3.3E-05 38.4 5.2 68 468-536 3-70 (90)
81 cd04889 ACT_PDH-BS-like C-term 85.7 3.1 6.7E-05 32.0 6.3 45 471-515 1-46 (56)
82 cd04931 ACT_PAH ACT domain of 85.7 7.1 0.00015 34.1 9.1 63 469-534 15-78 (90)
83 cd04904 ACT_AAAH ACT domain of 85.0 6.1 0.00013 32.8 8.1 60 473-536 5-65 (74)
84 KOG3560 Aryl-hydrocarbon recep 84.6 0.76 1.7E-05 51.6 3.2 41 334-374 31-75 (712)
85 COG2844 GlnD UTP:GlnB (protein 84.3 5 0.00011 47.6 9.7 60 467-526 683-743 (867)
86 cd04901 ACT_3PGDH C-terminal A 83.7 1.2 2.5E-05 35.5 3.1 56 472-532 3-58 (69)
87 PF13185 GAF_2: GAF domain; PD 82.6 4.4 9.6E-05 35.9 6.9 61 97-158 71-140 (148)
88 CHL00100 ilvH acetohydroxyacid 82.3 5.3 0.00011 39.2 7.6 64 470-536 4-69 (174)
89 PRK13562 acetolactate synthase 82.0 4.1 9E-05 35.4 6.0 64 470-535 4-69 (84)
90 PF05088 Bac_GDH: Bacterial NA 81.5 5.1 0.00011 50.9 8.9 77 467-543 488-569 (1528)
91 PRK11152 ilvM acetolactate syn 81.0 7.4 0.00016 33.0 7.1 62 470-535 5-68 (76)
92 TIGR00119 acolac_sm acetolacta 80.7 5.5 0.00012 38.4 7.0 63 470-535 3-67 (157)
93 COG4492 PheB ACT domain-contai 80.7 7.4 0.00016 36.6 7.5 67 466-533 70-137 (150)
94 cd04885 ACT_ThrD-I Tandem C-te 80.6 8.9 0.00019 31.0 7.3 46 472-518 2-48 (68)
95 PRK11589 gcvR glycine cleavage 80.2 8.8 0.00019 38.1 8.5 67 469-537 96-168 (190)
96 KOG3898 Transcription factor N 79.8 2.4 5.1E-05 43.9 4.5 51 329-379 73-126 (254)
97 cd04902 ACT_3PGDH-xct C-termin 78.6 6.9 0.00015 31.2 6.0 44 472-515 3-48 (73)
98 PRK00227 glnD PII uridylyl-tra 78.5 9.9 0.00022 44.8 9.6 71 469-540 547-618 (693)
99 PRK10872 relA (p)ppGpp synthet 78.5 6.6 0.00014 46.6 8.1 61 459-519 653-719 (743)
100 PRK06737 acetolactate synthase 78.3 7.9 0.00017 32.9 6.4 64 469-535 3-68 (76)
101 PRK11895 ilvH acetolactate syn 77.0 8.9 0.00019 37.1 7.2 63 470-535 4-68 (161)
102 KOG3559 Transcriptional regula 76.7 2.5 5.3E-05 46.2 3.6 42 335-376 8-53 (598)
103 KOG4395 Transcription factor A 74.7 4 8.7E-05 42.1 4.3 55 327-381 173-230 (285)
104 PRK11092 bifunctional (p)ppGpp 73.6 9.5 0.00021 45.1 7.7 61 459-519 613-678 (702)
105 TIGR00691 spoT_relA (p)ppGpp s 73.0 10 0.00022 44.7 7.7 62 458-519 596-662 (683)
106 PF13710 ACT_5: ACT domain; PD 73.0 6.8 0.00015 31.8 4.5 55 477-534 1-57 (63)
107 cd04929 ACT_TPH ACT domain of 72.7 24 0.00051 29.6 7.9 57 475-535 7-64 (74)
108 PRK08198 threonine dehydratase 72.4 18 0.00039 39.5 9.1 52 466-517 325-381 (404)
109 cd04906 ACT_ThrD-I_1 First of 72.2 26 0.00055 29.8 8.2 66 469-540 2-68 (85)
110 TIGR01127 ilvA_1Cterm threonin 71.8 20 0.00044 38.7 9.3 66 465-532 302-372 (380)
111 KOG3558 Hypoxia-inducible fact 70.3 3.2 7E-05 48.1 2.8 42 334-375 52-97 (768)
112 PRK06382 threonine dehydratase 69.2 22 0.00048 39.0 8.9 52 466-517 328-384 (406)
113 COG0788 PurU Formyltetrahydrof 69.0 21 0.00046 37.4 8.1 68 467-536 6-76 (287)
114 PRK11061 fused phosphoenolpyru 67.9 15 0.00033 43.7 7.8 116 5-158 20-147 (748)
115 PRK11899 prephenate dehydratas 64.7 43 0.00094 35.2 9.6 63 474-538 200-263 (279)
116 cd04922 ACT_AKi-HSDH-ThrA_2 AC 64.2 56 0.0012 25.3 8.2 36 470-505 3-41 (66)
117 PRK08178 acetolactate synthase 63.9 29 0.00064 30.9 6.9 64 468-535 8-73 (96)
118 PRK08526 threonine dehydratase 63.9 31 0.00068 38.0 8.8 54 465-518 323-381 (403)
119 KOG3582 Mlx interactors and re 63.0 2.1 4.5E-05 49.5 -0.5 67 326-392 649-720 (856)
120 cd04930 ACT_TH ACT domain of t 62.4 50 0.0011 30.1 8.4 60 473-536 46-106 (115)
121 TIGR01817 nifA Nif-specific re 62.3 5.3 0.00012 45.2 2.6 71 89-161 69-155 (534)
122 cd04892 ACT_AK-like_2 ACT doma 58.1 77 0.0017 23.7 7.8 34 470-503 2-38 (65)
123 cd04868 ACT_AK-like ACT domain 53.5 59 0.0013 23.8 6.3 26 478-503 13-38 (60)
124 cd04919 ACT_AK-Hom3_2 ACT doma 52.3 69 0.0015 25.0 6.8 29 477-505 13-41 (66)
125 cd04932 ACT_AKiii-LysC-EC_1 AC 49.0 1.4E+02 0.003 24.9 8.4 56 476-537 12-67 (75)
126 cd04916 ACT_AKiii-YclM-BS_2 AC 47.3 1.3E+02 0.0028 23.2 8.1 27 477-503 13-39 (66)
127 KOG4447 Transcription factor T 47.1 10 0.00022 36.5 1.3 42 335-376 29-72 (173)
128 PRK00227 glnD PII uridylyl-tra 45.8 30 0.00065 41.0 5.2 59 469-535 632-690 (693)
129 cd04890 ACT_AK-like_1 ACT doma 45.3 84 0.0018 24.4 6.2 25 477-501 12-36 (62)
130 COG0077 PheA Prephenate dehydr 43.7 1.1E+02 0.0023 32.5 8.3 63 473-537 199-262 (279)
131 COG4747 ACT domain-containing 43.6 69 0.0015 29.9 6.0 38 470-507 5-42 (142)
132 cd04933 ACT_AK1-AT_1 ACT domai 42.9 1.3E+02 0.0029 25.4 7.4 32 470-501 3-37 (78)
133 cd04898 ACT_ACR-like_4 ACT dom 41.9 39 0.00084 28.9 3.9 66 477-542 9-77 (77)
134 COG0317 SpoT Guanosine polypho 41.6 77 0.0017 37.6 7.6 61 458-518 613-678 (701)
135 COG3978 Acetolactate synthase 41.5 1.7E+02 0.0037 25.5 7.6 64 469-536 4-69 (86)
136 cd04924 ACT_AK-Arch_2 ACT doma 40.6 1.7E+02 0.0036 22.5 8.1 29 477-505 13-41 (66)
137 cd04912 ACT_AKiii-LysC-EC-like 40.3 1.4E+02 0.003 24.5 7.1 25 476-500 12-36 (75)
138 PRK15385 magnesium transport p 39.3 1.8E+02 0.0038 29.9 8.9 38 467-504 141-180 (225)
139 cd04937 ACT_AKi-DapG-BS_2 ACT 39.1 1.3E+02 0.0029 23.7 6.6 22 477-498 13-34 (64)
140 PRK11898 prephenate dehydratas 37.5 1.6E+02 0.0034 30.9 8.6 64 471-536 199-264 (283)
141 PF01590 GAF: GAF domain; Int 37.3 47 0.001 29.5 4.1 101 5-143 4-131 (154)
142 smart00065 GAF Domain present 37.0 1E+02 0.0022 25.5 6.0 27 5-31 4-30 (149)
143 PF02120 Flg_hook: Flagellar h 36.9 1.2E+02 0.0025 25.2 6.2 48 457-505 27-80 (85)
144 PRK10622 pheA bifunctional cho 36.9 1.5E+02 0.0032 32.7 8.5 60 476-537 305-365 (386)
145 cd04918 ACT_AK1-AT_2 ACT domai 35.6 1.2E+02 0.0027 24.1 5.9 32 477-508 12-43 (65)
146 KOG3582 Mlx interactors and re 34.8 15 0.00032 42.9 0.5 61 328-391 787-852 (856)
147 cd04934 ACT_AK-Hom3_1 CT domai 34.7 2.2E+02 0.0049 23.5 7.4 24 478-501 14-37 (73)
148 cd04915 ACT_AK-Ectoine_2 ACT d 33.5 2.4E+02 0.0051 22.7 7.2 28 478-505 14-41 (66)
149 PF13492 GAF_3: GAF domain; PD 32.6 1.2E+02 0.0027 25.8 5.9 111 5-157 4-119 (129)
150 PRK08639 threonine dehydratase 32.2 1.8E+02 0.0039 32.2 8.3 67 465-533 333-401 (420)
151 cd04923 ACT_AK-LysC-DapG-like_ 31.9 2.2E+02 0.0048 21.4 7.4 25 477-501 12-36 (63)
152 PF02344 Myc-LZ: Myc leucine z 31.1 50 0.0011 23.6 2.4 16 337-352 14-29 (32)
153 cd04913 ACT_AKii-LysC-BS-like_ 29.6 2.7E+02 0.0058 21.5 7.8 27 476-502 10-36 (75)
154 COG3074 Uncharacterized protei 29.5 74 0.0016 26.8 3.6 27 366-392 13-39 (79)
155 TIGR02079 THD1 threonine dehyd 29.1 2.3E+02 0.005 31.3 8.5 54 465-518 322-377 (409)
156 COG2061 ACT-domain-containing 29.0 2.4E+02 0.0053 27.5 7.4 49 469-517 6-57 (170)
157 cd04871 ACT_PSP_2 ACT domains 29.0 66 0.0014 27.4 3.4 64 471-537 2-75 (84)
158 PLN02317 arogenate dehydratase 28.1 2.6E+02 0.0056 30.9 8.5 59 476-536 291-364 (382)
159 PRK12483 threonine dehydratase 28.1 3E+02 0.0065 31.6 9.4 52 465-518 342-394 (521)
160 PF14689 SPOB_a: Sensor_kinase 28.0 1.8E+02 0.0039 23.5 5.6 41 337-384 17-57 (62)
161 cd04921 ACT_AKi-HSDH-ThrA-like 27.9 2.3E+02 0.005 22.9 6.5 29 477-505 13-41 (80)
162 PF13840 ACT_7: ACT domain ; P 27.9 80 0.0017 25.4 3.6 33 468-500 6-42 (65)
163 PF06005 DUF904: Protein of un 27.2 85 0.0018 26.5 3.6 26 366-391 13-38 (72)
164 cd04936 ACT_AKii-LysC-BS-like_ 25.2 3E+02 0.0064 20.7 7.5 25 477-501 12-36 (63)
165 PRK09224 threonine dehydratase 24.8 3.9E+02 0.0085 30.4 9.6 52 465-518 325-377 (504)
166 TIGR01124 ilvA_2Cterm threonin 24.7 3.3E+02 0.0072 31.0 8.9 69 465-540 322-391 (499)
167 COG0440 IlvH Acetolactate synt 24.6 1.9E+02 0.0042 28.2 6.0 64 470-536 6-71 (163)
168 TIGR01270 Trp_5_monoox tryptop 23.7 3.1E+02 0.0067 31.1 8.2 62 471-536 34-97 (464)
169 cd04935 ACT_AKiii-DAPDC_1 ACT 22.3 3.6E+02 0.0079 22.3 6.6 26 476-501 12-37 (75)
170 PF13224 DUF4032: Domain of un 21.9 1.9E+02 0.0042 28.3 5.5 51 480-535 19-69 (165)
171 cd04907 ACT_ThrD-I_2 Second of 21.3 5.1E+02 0.011 21.9 7.4 37 469-506 2-38 (81)
172 TIGR01268 Phe4hydrox_tetr phen 21.1 3.9E+02 0.0084 30.2 8.3 61 473-536 21-82 (436)
173 PTZ00324 glutamate dehydrogena 20.2 4.6E+02 0.01 32.7 9.3 75 459-533 219-299 (1002)
No 1
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal
Probab=100.00 E-value=5.8e-41 Score=319.74 Aligned_cols=148 Identities=27% Similarity=0.409 Sum_probs=113.2
Q ss_pred HHHHHHhccCCCCCcEEEEeeecCCCceEEEcccccCCCCCCCCCCCCCCCCCCC-----CCCCCccC--CC-CCCCchh
Q 045155 7 LMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVS-----PFLPCRDV--IF-PHPRTKS 78 (582)
Q Consensus 7 Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s-----~~~~~~d~--~~-~~~~t~~ 78 (582)
|||+||+||++++|+||||||+++++++|+|+||||+|+.++.... ++.....+ +...+.+. .. +..+++
T Consensus 1 Lq~~Lr~lv~~~~W~YaVFWk~~~~~~~L~W~DG~~~g~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~v~~~e- 78 (163)
T PF14215_consen 1 LQQRLRSLVENSQWTYAVFWKLSPDNSVLVWGDGYCNGPKETRKNG-EEEQEQRSKVLRELHSSFSSYALSPEEVTDTE- 78 (163)
T ss_pred ChHHHHHHhCCCCCcEEEEeEEcCCCCeeeEcceeecCCcccccch-hhccchhhhHHHHHhhhccccccccchhHHHH-
Confidence 7999999999999999999999999999999999999987654332 11111111 00011111 11 122444
Q ss_pred hhHhhcccccccCCCcceeeeeccCCceeeeccCCc----c-hHHHhh--cCCeEEEEeeCCcEEeecccccccCChHHH
Q 045155 79 CELLSQLPSSMPLDSGIYAQSLISNQPRWLNFSNSA----D-LEVMEE--TLWTRVLIPIMGGLIELFATKEVSEDPHVI 151 (582)
Q Consensus 79 ~~~l~~M~~s~~~g~G~~G~~~~sg~~~Wi~~~~~~----~-~~~~~~--gIqTiv~iPv~~GVvELGS~~~i~Ed~~~v 151 (582)
|||+.+|+++| |+|+|||||++|+|+||+..+.. + ...+++ ||||||||||++|||||||+++|+||+++|
T Consensus 79 ~f~~~s~~~sf--g~G~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv~IPv~~GVvELGSt~~I~Ed~~~v 156 (163)
T PF14215_consen 79 WFYLVSMSYSF--GEGIPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIVCIPVPNGVVELGSTEKIPEDSNLV 156 (163)
T ss_pred HHhhceeeEEe--cCCccEEEeecCccEEEeCCCccccccchhhhhhcccccceEEEEEecCCEEEeeeeeeeccCHHHH
Confidence 99999999888 99999999999999999422211 1 123333 999999999999999999999999999999
Q ss_pred HHHHHHc
Q 045155 152 DFIIAQC 158 (582)
Q Consensus 152 ~~vk~~f 158 (582)
++||++|
T Consensus 157 ~~vk~~F 163 (163)
T PF14215_consen 157 QRVKSLF 163 (163)
T ss_pred HHHHhhC
Confidence 9999998
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.21 E-value=1.6e-11 Score=97.46 Aligned_cols=54 Identities=37% Similarity=0.656 Sum_probs=50.1
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 045155 328 PQSKNLVAERKRRKKLNDRLYALRALVPII---TKLDRATILVDAIEYVKQLQKQEK 381 (582)
Q Consensus 328 ~~~~h~~~ER~RR~~in~~~~~LrsLvP~~---~K~dKasiL~~aI~YIk~Lq~~v~ 381 (582)
.+..|+..||+||++||..|..|+++||.. .|+||++||..||+||+.|+.+++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 456799999999999999999999999987 899999999999999999998763
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.18 E-value=4.5e-11 Score=92.90 Aligned_cols=49 Identities=45% Similarity=0.666 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 045155 333 LVAERKRRKKLNDRLYALRALVPI---ITKLDRATILVDAIEYVKQLQKQEK 381 (582)
Q Consensus 333 ~~~ER~RR~~in~~~~~LrsLvP~---~~K~dKasiL~~aI~YIk~Lq~~v~ 381 (582)
+..||+||++||+.|..|+++||. ..|++|++||.+||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999994 6799999999999999999999876
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.17 E-value=2.2e-11 Score=95.76 Aligned_cols=49 Identities=47% Similarity=0.717 Sum_probs=45.9
Q ss_pred CccccHHHHHHHHHHHHHHHHHHhcCCCC-----CCCChhhHHHHHHHHHHHHH
Q 045155 329 QSKNLVAERKRRKKLNDRLYALRALVPII-----TKLDRATILVDAIEYVKQLQ 377 (582)
Q Consensus 329 ~~~h~~~ER~RR~~in~~~~~LrsLvP~~-----~K~dKasiL~~aI~YIk~Lq 377 (582)
+..|+..||+||++||+.|..|+.+||.. .|++|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 45799999999999999999999999975 68999999999999999997
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.09 E-value=5e-11 Score=114.13 Aligned_cols=99 Identities=24% Similarity=0.321 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHhcCCC-------CCCCChhhHH
Q 045155 294 NNNNGRSDSISDCSDQIDDLEDDVKYRPRRNGKEPQSKNLVAERKRRKKLNDRLYALRALVPI-------ITKLDRATIL 366 (582)
Q Consensus 294 ~~~~~~~~s~s~~s~~~~e~~~~~~~r~~~~~~~~~~~h~~~ER~RR~~in~~~~~LrsLvP~-------~~K~dKasiL 366 (582)
|+..|...++|..+.++++++.-...+.-.+..+++..|..+||+||+.||..|..|+.|||- +.|+.||-||
T Consensus 28 ~Ss~GStsssSApNtdd~ds~~hS~a~k~syk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~IL 107 (229)
T KOG1319|consen 28 ASSIGSTSASSAPNTDDEDSDYHSEAYKESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIIL 107 (229)
T ss_pred cCCCCCCCCCCCCCCCcccccchhHHHHhhHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHH
Confidence 334444444445554433322111111123456778899999999999999999999999995 3488899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 045155 367 VDAIEYVKQLQKQEKELKEELEENSD 392 (582)
Q Consensus 367 ~~aI~YIk~Lq~~v~~L~~~~~~l~~ 392 (582)
.++|+||.+|++++.+.+++...|+.
T Consensus 108 qksidyi~~L~~~k~kqe~e~s~L~k 133 (229)
T KOG1319|consen 108 QKTIDYIQFLHKEKKKQEEEVSTLRK 133 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888775
No 6
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.64 E-value=3e-08 Score=106.45 Aligned_cols=56 Identities=30% Similarity=0.549 Sum_probs=51.0
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHH
Q 045155 327 EPQSKNLVAERKRRKKLNDRLYALRALVPII----TKLDRATILVDAIEYVKQLQKQEKE 382 (582)
Q Consensus 327 ~~~~~h~~~ER~RR~~in~~~~~LrsLvP~~----~K~dKasiL~~aI~YIk~Lq~~v~~ 382 (582)
++|..|++.|||||++||+++..|..|||.+ .|..|..||..+++||+.||+..++
T Consensus 232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999986 3667999999999999999988774
No 7
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.39 E-value=2.2e-06 Score=72.21 Aligned_cols=67 Identities=13% Similarity=0.283 Sum_probs=58.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCH----HHHHHHHHHHHh
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQA----DHVRDSLLELTR 536 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsa----e~Ik~aL~~vir 536 (582)
+|+|.|++|||+|.+|..+|-++|++|.+|.|+|.++++..+|.++-.+|..+.. +.|+++|..++.
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999999999999999999888877643 455666666654
No 8
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.37 E-value=3.3e-06 Score=70.63 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=58.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
+|+|.+++|||+|.+|.++|.++||+|..|.|+|.++++..+|.+.-.+|..+.-.+..+.|.+.+.
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999877777765556666666554
No 9
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.23 E-value=1e-05 Score=68.20 Aligned_cols=68 Identities=12% Similarity=0.255 Sum_probs=57.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEe--ecCCEEEEEEEEEeCCCccc-C---HHHHHHHHHHHHhCC
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVT--SRTGLVSNVFNVKKRDNEMV-Q---ADHVRDSLLELTRNP 538 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvS--t~~g~vl~tf~vKv~d~~~v-s---ae~Ik~aL~~vir~~ 538 (582)
+|+|.|.+|||+|.+|.++|..+||+|..|.|+ |.++++..+|.+. .++..+ + .+.|+++|.+++..|
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~-~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQ-SDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEe-CCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 588999999999999999999999999999999 9999999999994 444343 2 456777777776543
No 10
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.19 E-value=1.2e-05 Score=67.55 Aligned_cols=69 Identities=22% Similarity=0.427 Sum_probs=54.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEee-cCCEEEEEEEEEeCCCccc---CHHHHHHHHHHHHhC
Q 045155 469 FFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTS-RTGLVSNVFNVKKRDNEMV---QADHVRDSLLELTRN 537 (582)
Q Consensus 469 v~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt-~~g~vl~tf~vKv~d~~~v---sae~Ik~aL~~vir~ 537 (582)
++|+|.|++|+|+|.+|..+|..+||+|+.|.+++ .+++++.+|.+.-.++... ..+.|+++|.+++.+
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence 47899999999999999999999999999999996 8999999999975544311 233455555555543
No 11
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.16 E-value=2e-05 Score=65.25 Aligned_cols=67 Identities=24% Similarity=0.403 Sum_probs=54.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec-CCEEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR-TGLVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~-~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
.|.|.|++|+|+|.+|..+|..+||+|+.|.+.|. +++++.+|.+.-.++.....++..+.|.+.+.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~ 70 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALE 70 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHH
Confidence 57889999999999999999999999999999877 69999999998666655544444455555544
No 12
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.03 E-value=1.5e-05 Score=80.59 Aligned_cols=69 Identities=22% Similarity=0.419 Sum_probs=56.1
Q ss_pred CCCCCCCccccHHHHHHHHHHHHHHHHHHhcCCCC--CCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045155 323 RNGKEPQSKNLVAERKRRKKLNDRLYALRALVPII--TKLD-RATILVDAIEYVKQLQKQEKELKEELEENS 391 (582)
Q Consensus 323 ~~~~~~~~~h~~~ER~RR~~in~~~~~LrsLvP~~--~K~d-KasiL~~aI~YIk~Lq~~v~~L~~~~~~l~ 391 (582)
..+...+..|+.-||+||..|++.|..|+.+||.. .+.. .++||..|+.||+.|+.+..+.+..++.|.
T Consensus 54 ~~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~ 125 (232)
T KOG2483|consen 54 SSAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLS 125 (232)
T ss_pred CCCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35567788999999999999999999999999974 3333 699999999999999887766555544443
No 13
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.98 E-value=7.3e-06 Score=94.79 Aligned_cols=51 Identities=25% Similarity=0.436 Sum_probs=47.8
Q ss_pred CccccHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 045155 329 QSKNLVAERKRRKKLNDRLYALRALVPII----TKLDRATILVDAIEYVKQLQKQ 379 (582)
Q Consensus 329 ~~~h~~~ER~RR~~in~~~~~LrsLvP~~----~K~dKasiL~~aI~YIk~Lq~~ 379 (582)
|..|+.+||+||++||..+.+|.+|||.+ .|+||.+||..||.+||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 67899999999999999999999999964 6999999999999999999885
No 14
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.90 E-value=8.2e-05 Score=62.01 Aligned_cols=67 Identities=19% Similarity=0.316 Sum_probs=54.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCC-CcccC----HHHHHHHHHHHHh
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRD-NEMVQ----ADHVRDSLLELTR 536 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d-~~~vs----ae~Ik~aL~~vir 536 (582)
+|+|.+++|||+|.+|..+|..+|++|+.|.+++.++.++.+|.+.-.+ +..+. .+.|+++|.+++.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 5889999999999999999999999999999999999999999987544 43332 3456666665543
No 15
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.85 E-value=1.1e-05 Score=82.68 Aligned_cols=55 Identities=31% Similarity=0.517 Sum_probs=47.9
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHhcCCC--------CCCCChhhHHHHHHHHHHHHHHHHHH
Q 045155 328 PQSKNLVAERKRRKKLNDRLYALRALVPI--------ITKLDRATILVDAIEYVKQLQKQEKE 382 (582)
Q Consensus 328 ~~~~h~~~ER~RR~~in~~~~~LrsLvP~--------~~K~dKasiL~~aI~YIk~Lq~~v~~ 382 (582)
++..|-+.||+||++||+-|..|+.|||- ..|++||.||.-|++|++.|+.....
T Consensus 32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 34567789999999999999999999993 27889999999999999999876544
No 16
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.72 E-value=0.00031 Score=56.74 Aligned_cols=65 Identities=18% Similarity=0.352 Sum_probs=52.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELT 535 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vi 535 (582)
.|.|.+++++|+|.+|+.+|.+++++|.++++.+.++.++.+|.+.-.++...+. +..++|.+.+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~-~~~~~i~~~l 66 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDP-ERQEALRAAL 66 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCH-HHHHHHHHHH
Confidence 5788999999999999999999999999999999888999999998766655433 3333444443
No 17
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.67 E-value=0.00043 Score=57.43 Aligned_cols=64 Identities=23% Similarity=0.296 Sum_probs=55.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEee-cCCEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTS-RTGLVSNVFNVKKRDNEMVQADHVRDSLLELT 535 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt-~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vi 535 (582)
.|-|.|+++||+|.+|..+|..+||+|+.|++.+ .+|.++.+|.+.-.++ -....+.++|++.+
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~--~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKR--GETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCc--cchHHHHHHHHHhh
Confidence 4678899999999999999999999999999995 5789999999986555 56777889988875
No 18
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.66 E-value=4.6e-05 Score=88.62 Aligned_cols=66 Identities=30% Similarity=0.511 Sum_probs=60.9
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHHHhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045155 326 KEPQSKNLVAERKRRKKLNDRLYALRALVPII-TKLDRATILVDAIEYVKQLQKQEKELKEELEENS 391 (582)
Q Consensus 326 ~~~~~~h~~~ER~RR~~in~~~~~LrsLvP~~-~K~dKasiL~~aI~YIk~Lq~~v~~L~~~~~~l~ 391 (582)
+.+|.+|+..||+-|..||+++..|+.+||.. .|..|..+|..||+||++|+...+.+..+...++
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 68889999999999999999999999999974 7999999999999999999999888888777665
No 19
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.52 E-value=0.00095 Score=55.26 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=53.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
.|.|.+++++|+|.+|..+|.+++++|++|.+.+.++.++.+|++.-.++..... +..++|.+.+.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~-~~~~~l~~~l~ 68 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDP-KTIEAVRQEIG 68 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCH-HHHHHHHHHhc
Confidence 4667888999999999999999999999999999988999999997656554533 45556666665
No 20
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.47 E-value=0.00027 Score=60.38 Aligned_cols=52 Identities=29% Similarity=0.517 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcCCC------CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 045155 341 KKLNDRLYALRALVPI------ITKLDRATILVDAIEYVKQLQKQEKELKEELEENSD 392 (582)
Q Consensus 341 ~~in~~~~~LrsLvP~------~~K~dKasiL~~aI~YIk~Lq~~v~~L~~~~~~l~~ 392 (582)
+.|++.+..|++|+|. ..|.+-+-+|.|+.+||+.|++++..|.+++.+|..
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~ 77 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA 77 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999995 345666778999999999999999999999998865
No 21
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.37 E-value=0.0001 Score=76.05 Aligned_cols=52 Identities=37% Similarity=0.561 Sum_probs=46.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCC--CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 045155 332 NLVAERKRRKKLNDRLYALRALVPI--ITKLDRATILVDAIEYVKQLQKQEKEL 383 (582)
Q Consensus 332 h~~~ER~RR~~in~~~~~LrsLvP~--~~K~dKasiL~~aI~YIk~Lq~~v~~L 383 (582)
-+.-||+|-.-||..|..||+|+|. +.|.+||.||..+.+||.+|+.+.-+|
T Consensus 64 ANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 64 ANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred hcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 4568999999999999999999996 689999999999999999999876654
No 22
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.06 E-value=0.0036 Score=52.34 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=55.8
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 468 EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 468 ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
.++|.+.+++|||++..|..+|.++|.+|+.++.++.++.+...+.+.+.+ -+.++|+.+|.++.+
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~---~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPE---DSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESH---HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCc---ccHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999998872 266788888887754
No 23
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.04 E-value=0.0033 Score=75.16 Aligned_cols=80 Identities=18% Similarity=0.337 Sum_probs=64.0
Q ss_pred ceEEEEE-ecCceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCH---HHHHHHHH
Q 045155 457 VQVEVAQ-LNGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQA---DHVRDSLL 532 (582)
Q Consensus 457 ~qVeV~~-i~g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsa---e~Ik~aL~ 532 (582)
+.|.+.- ..+.--.|+|.|.+|||+|.+|.++|.++||+|.+|.|+|.++++..+|.+.-.+|..++. +.|+++|.
T Consensus 796 ~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~ 875 (884)
T PRK05007 796 TEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLT 875 (884)
T ss_pred CEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHH
Confidence 4555531 2244567999999999999999999999999999999999999999999998777766663 45666666
Q ss_pred HHHh
Q 045155 533 ELTR 536 (582)
Q Consensus 533 ~vir 536 (582)
.++.
T Consensus 876 ~~l~ 879 (884)
T PRK05007 876 EALN 879 (884)
T ss_pred HHHh
Confidence 6654
No 24
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.03 E-value=0.0071 Score=48.30 Aligned_cols=66 Identities=21% Similarity=0.361 Sum_probs=51.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
.|.|.|++++|+|.+|+.+|.++++.|.++.+.+.++.....|.+.-.++.. ..++-.+.|.+.++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~ 67 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP-LDPERIARLEEALE 67 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999877888888887666543 23344445555544
No 25
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.89 E-value=0.007 Score=72.46 Aligned_cols=82 Identities=18% Similarity=0.314 Sum_probs=65.5
Q ss_pred ceEEEEEec-CceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCH----HHHHHHH
Q 045155 457 VQVEVAQLN-GNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQA----DHVRDSL 531 (582)
Q Consensus 457 ~qVeV~~i~-g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsa----e~Ik~aL 531 (582)
+.|.+..-. +.-..|.|.+.+|||+|.+|..+|..+||+|+.|.|+|.+++++.+|.+.-.++..+.. +.|+++|
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L 881 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAI 881 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH
Confidence 455554322 34567999999999999999999999999999999999999999999998766655433 4577777
Q ss_pred HHHHhCC
Q 045155 532 LELTRNP 538 (582)
Q Consensus 532 ~~vir~~ 538 (582)
.+++...
T Consensus 882 ~~~L~~~ 888 (895)
T PRK00275 882 CEQLDAR 888 (895)
T ss_pred HHHHhcc
Confidence 7777543
No 26
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.76 E-value=0.012 Score=49.34 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=56.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 469 FFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 469 v~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
+.|.+.|+++||+..+|-..|.++|..|+.++.+..++.++..+.+.+.. .+.+++++.|..+..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~---~~~~~l~~~l~~~~~ 66 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW---DAIAKLEAALPGLAR 66 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc---ccHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999888887777652 467888888887654
No 27
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.74 E-value=0.012 Score=70.19 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=64.2
Q ss_pred cceEEEEEe-cCceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCH---HHHHHHH
Q 045155 456 EVQVEVAQL-NGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQA---DHVRDSL 531 (582)
Q Consensus 456 ~~qVeV~~i-~g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsa---e~Ik~aL 531 (582)
.+.|.+..- .+.-..|.|.+.+|||+|.+|..+|..+||+|+.|.|+|.++++..+|.+.-.++..+.. +.|+++|
T Consensus 783 ~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L 862 (869)
T PRK04374 783 APRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDAL 862 (869)
T ss_pred CCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHH
Confidence 356666532 234578999999999999999999999999999999999999999999998666654432 5666666
Q ss_pred HHHHh
Q 045155 532 LELTR 536 (582)
Q Consensus 532 ~~vir 536 (582)
.+++.
T Consensus 863 ~~~l~ 867 (869)
T PRK04374 863 CACLD 867 (869)
T ss_pred HHHhc
Confidence 66653
No 28
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.73 E-value=0.0056 Score=48.30 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=46.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLEL 534 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~v 534 (582)
.|.|.|++|||+|.+|..+|.++|++|.++.+.+..+.....+.+...+ ....+.+.++|.++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD--EEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE--GHGHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC--CCCHHHHHHHHHcc
Confidence 5788999999999999999999999999999999876211122222111 25667777777765
No 29
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.73 E-value=0.0014 Score=66.30 Aligned_cols=60 Identities=27% Similarity=0.349 Sum_probs=51.1
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 045155 327 EPQSKNLVAERKRRKKLNDRLYALRALVPI----ITKLDRATILVDAIEYVKQLQKQEKELKEE 386 (582)
Q Consensus 327 ~~~~~h~~~ER~RR~~in~~~~~LrsLvP~----~~K~dKasiL~~aI~YIk~Lq~~v~~L~~~ 386 (582)
..+..++..||+|=+.+|..|..||.+||. ..|.+|..+|.-||.||+.|++-++.-+..
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 344567778999999999999999999994 468899999999999999999887765543
No 30
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.61 E-value=0.01 Score=50.74 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=58.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHhC
Q 045155 469 FFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRN 537 (582)
Q Consensus 469 v~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~ 537 (582)
+.|.+.|+++||++.+|.+.|-++|++|...+..+.++.+...+.+.... ...+.+++++.|.++..+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~L~~~l~~l~~~ 69 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE-SNLDFAELQEELEELGKE 69 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC-CCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999888877777777664 136788999999987765
No 31
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.54 E-value=0.011 Score=70.57 Aligned_cols=79 Identities=14% Similarity=0.277 Sum_probs=62.3
Q ss_pred ceEEEEE-ecCceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCH---HHHHHHHH
Q 045155 457 VQVEVAQ-LNGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQA---DHVRDSLL 532 (582)
Q Consensus 457 ~qVeV~~-i~g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsa---e~Ik~aL~ 532 (582)
+.|.+.. ..+.--.|+|.+.+|||+|.+|.++|.++|++|..|.|+|.++++..+|.+.-.+|..++. +.|+++|.
T Consensus 771 ~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~ 850 (854)
T PRK01759 771 TEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLL 850 (854)
T ss_pred CEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHH
Confidence 4555531 2234578999999999999999999999999999999999999999999998777766553 44555555
Q ss_pred HHH
Q 045155 533 ELT 535 (582)
Q Consensus 533 ~vi 535 (582)
.++
T Consensus 851 ~~l 853 (854)
T PRK01759 851 SNL 853 (854)
T ss_pred HHh
Confidence 443
No 32
>PRK00194 hypothetical protein; Validated
Probab=96.54 E-value=0.013 Score=50.09 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=57.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHhC
Q 045155 468 EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRN 537 (582)
Q Consensus 468 ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~ 537 (582)
.+.|.|.|+++||++.+|...|.++|++|+..+..+.++.+...+.+.+... ..+.+++++.|.++-..
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~l~~l~~~ 71 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISES-KKDFAELKEELEELGKE 71 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCC-CCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999988887777777776541 35678899888886543
No 33
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.51 E-value=0.022 Score=47.32 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=55.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC------CEEEEEEEEEeCCCcccCHHHHHHHHHHHHhC
Q 045155 471 IKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT------GLVSNVFNVKKRDNEMVQADHVRDSLLELTRN 537 (582)
Q Consensus 471 IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~------g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~ 537 (582)
|.|.|++++|++.+|-+.|.++|++|...+..+.+ +.+...+.+.+.+ ..+..++++.|..+-++
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~--~~~~~~l~~~l~~l~~~ 72 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA--GTDLDALREELEELCDD 72 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC--CCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999998887 6666677777764 36788999999887654
No 34
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.47 E-value=0.02 Score=67.72 Aligned_cols=72 Identities=21% Similarity=0.183 Sum_probs=64.4
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHhCC
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNP 538 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~ 538 (582)
+.+.|.|.|.+|||+|.+|..+|..+|++|+.|++.+.+|.++.+|.|.-.++.....+.|+++|.+++...
T Consensus 598 ~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~~~ 669 (774)
T PRK03381 598 HMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRALDGD 669 (774)
T ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHHHcCC
Confidence 457899999999999999999999999999999999999999999999876665556788999999998764
No 35
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.46 E-value=0.018 Score=69.43 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=66.6
Q ss_pred cceEEEEEec-CceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccC----HHHHHHH
Q 045155 456 EVQVEVAQLN-GNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQ----ADHVRDS 530 (582)
Q Consensus 456 ~~qVeV~~i~-g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vs----ae~Ik~a 530 (582)
.+.|.+..-. .....|.|.|.++||+|.+|..+|.++|++|.+|.|.|.++++..+|.+.-.++..+. .+.|+++
T Consensus 830 ~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~ 909 (931)
T PRK05092 830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRA 909 (931)
T ss_pred CCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHH
Confidence 3456665322 3347899999999999999999999999999999999999999999999876665542 3568888
Q ss_pred HHHHHhC
Q 045155 531 LLELTRN 537 (582)
Q Consensus 531 L~~vir~ 537 (582)
|.+++..
T Consensus 910 L~~~L~~ 916 (931)
T PRK05092 910 LLAALAE 916 (931)
T ss_pred HHHHhcC
Confidence 8888864
No 36
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=96.41 E-value=0.0066 Score=61.60 Aligned_cols=64 Identities=25% Similarity=0.348 Sum_probs=51.8
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcC-CCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045155 327 EPQSKNLVAERKRRKKLNDRLYALRALV-PII-TKLDRATILVDAIEYVKQLQKQEKELKEELEEN 390 (582)
Q Consensus 327 ~~~~~h~~~ER~RR~~in~~~~~LrsLv-P~~-~K~dKasiL~~aI~YIk~Lq~~v~~L~~~~~~l 390 (582)
++|..-.+.||+|=+|+|+-|.+|..-. ++. ...-|.-||-.||+||..||.-++++.+....+
T Consensus 117 DRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 117 DRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 3444567899999999999999996544 444 467799999999999999999999887766554
No 37
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.36 E-value=0.023 Score=46.90 Aligned_cols=68 Identities=9% Similarity=0.142 Sum_probs=50.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCc-ccCHHHHHHHHHHHHhC
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNE-MVQADHVRDSLLELTRN 537 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~-~vsae~Ik~aL~~vir~ 537 (582)
.|.|.|++|+|++.+|.+.|.++|+.++..+..+..+.-...+.+++.-.. .++.++++++|..+-.+
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 69 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAE 69 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999988532212233333333222 36789999999887654
No 38
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.016 Score=67.54 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=66.1
Q ss_pred ccceEEEEEec-CceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 045155 455 MEVQVEVAQLN-GNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLE 533 (582)
Q Consensus 455 ~~~qVeV~~i~-g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~ 533 (582)
+.|+|++..-. .+--+|+|.+.+|||+|..|-.+|.+++|+|++|.|+|+|.++..+|.+....+..+ ..+++++|.+
T Consensus 777 i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l-~~~~~q~l~~ 855 (867)
T COG2844 777 IPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQAL-NAELRQSLLQ 855 (867)
T ss_pred cCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccC-CHHHHHHHHH
Confidence 44567665322 335779999999999999999999999999999999999999999999998888767 4456666666
Q ss_pred HHh
Q 045155 534 LTR 536 (582)
Q Consensus 534 vir 536 (582)
.+-
T Consensus 856 ~ll 858 (867)
T COG2844 856 RLL 858 (867)
T ss_pred HHH
Confidence 553
No 39
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.23 E-value=0.03 Score=46.47 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=57.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHhC
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRN 537 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~ 537 (582)
+|.|.+.+|||+..+|-++|.++|++|...+.++.++.+...+.+.+..+ ++.++++++|..+..+
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~--~~~~~l~~~l~~l~~~ 66 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS--ADSEALLKDLLFKAHE 66 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC--CCHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999988777787777655 6789999999887653
No 40
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.20 E-value=0.016 Score=48.42 Aligned_cols=52 Identities=15% Similarity=0.343 Sum_probs=43.8
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec--CCEEEEEEEEEeCCC
Q 045155 468 EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR--TGLVSNVFNVKKRDN 519 (582)
Q Consensus 468 ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~--~g~vl~tf~vKv~d~ 519 (582)
.+.|+|.+.+|+|+|.+|..+|.+.++.|.++++... ++.....|.+++++-
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~ 59 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDL 59 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSH
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCH
Confidence 3668888999999999999999999999999999984 678888999998653
No 41
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.18 E-value=0.025 Score=67.47 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=61.3
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEe-ecCCEEEEEEEEEeCCCcccCH----HHHHHHHHHHHhCC
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVT-SRTGLVSNVFNVKKRDNEMVQA----DHVRDSLLELTRNP 538 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvS-t~~g~vl~tf~vKv~d~~~vsa----e~Ik~aL~~vir~~ 538 (582)
....|.|.+++++|+|.+|..+|..+||+|+.|.|. +.++.++.+|.+.-.++..+.. +.|++.|.+++...
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~ 743 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGL 743 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 456799999999999999999999999999999999 7899999999999877765543 34777787887653
No 42
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.15 E-value=0.029 Score=66.28 Aligned_cols=65 Identities=25% Similarity=0.321 Sum_probs=55.8
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 045155 468 EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLEL 534 (582)
Q Consensus 468 ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~v 534 (582)
-..|.|.+.++||+|.+|..+|..+|++|++|.|+|.+++++.+|.+.-.++..++.+ .+.|.+.
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~ 771 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQA 771 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHH
Confidence 4789999999999999999999999999999999999999999999987777655433 4444443
No 43
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.14 E-value=0.033 Score=66.56 Aligned_cols=79 Identities=15% Similarity=0.232 Sum_probs=58.2
Q ss_pred ceEEEEEe-cCceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCc-ccCHHHHHHHHHHH
Q 045155 457 VQVEVAQL-NGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNE-MVQADHVRDSLLEL 534 (582)
Q Consensus 457 ~qVeV~~i-~g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~-~vsae~Ik~aL~~v 534 (582)
+.|.+..- .+.-..|.|.|.+|||+|.+|..+|..+||+|+.|.|+|.+++++.+|.+.-.+.. .-..+.|+++|.++
T Consensus 774 ~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~ 853 (856)
T PRK03059 774 PRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDA 853 (856)
T ss_pred ceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 34555422 23457899999999999999999999999999999999999999999999422210 01234556666555
Q ss_pred H
Q 045155 535 T 535 (582)
Q Consensus 535 i 535 (582)
+
T Consensus 854 L 854 (856)
T PRK03059 854 L 854 (856)
T ss_pred h
Confidence 4
No 44
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.92 E-value=0.045 Score=65.65 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=60.8
Q ss_pred CceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec-CCEEEEEEEEEeCCCcccCH---HHHHHHHHHHHhCC
Q 045155 466 GNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR-TGLVSNVFNVKKRDNEMVQA---DHVRDSLLELTRNP 538 (582)
Q Consensus 466 g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~-~g~vl~tf~vKv~d~~~vsa---e~Ik~aL~~vir~~ 538 (582)
.+...|.|.|++++|+|.+|..+|..+||+|+.|.|.|. +|.++.+|.+.-.++..+.. +.|++.|.+++...
T Consensus 699 ~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~ 775 (884)
T PRK05007 699 RGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQS 775 (884)
T ss_pred CCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 346789999999999999999999999999999998865 55999999998777765554 34778888887654
No 45
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.91 E-value=0.045 Score=65.37 Aligned_cols=72 Identities=15% Similarity=0.387 Sum_probs=60.5
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEee-cCCEEEEEEEEEeCCCcccCHH---HHHHHHHHHHhCC
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTS-RTGLVSNVFNVKKRDNEMVQAD---HVRDSLLELTRNP 538 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt-~~g~vl~tf~vKv~d~~~vsae---~Ik~aL~~vir~~ 538 (582)
....|.|.|++++|+|.+|..+|..+||+|+.|.|.| .+|.++.+|.+.-.++..+..+ .|+++|.+++...
T Consensus 676 ~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~ 751 (854)
T PRK01759 676 GGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTN 751 (854)
T ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 4568999999999999999999999999999999976 8999999999987777655543 4667777777643
No 46
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=95.85 E-value=0.044 Score=65.39 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=60.9
Q ss_pred ceEEEEEec-CceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCH---HHHHHHHH
Q 045155 457 VQVEVAQLN-GNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQA---DHVRDSLL 532 (582)
Q Consensus 457 ~qVeV~~i~-g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsa---e~Ik~aL~ 532 (582)
+.|++.--. ..-..|.|.|.+|||+|.+|.++|.++|++|.+|.++|.++++..+|.+....+..++. +.|+++|.
T Consensus 767 ~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~ 846 (850)
T TIGR01693 767 PRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLA 846 (850)
T ss_pred CeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 456554222 34578999999999999999999999999999999999999999999998777765554 34444444
Q ss_pred H
Q 045155 533 E 533 (582)
Q Consensus 533 ~ 533 (582)
.
T Consensus 847 ~ 847 (850)
T TIGR01693 847 A 847 (850)
T ss_pred H
Confidence 3
No 47
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.70 E-value=0.055 Score=44.08 Aligned_cols=60 Identities=12% Similarity=0.241 Sum_probs=46.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC-CEEEEEEEEEeCCCcccCHHHHHHHHH
Q 045155 471 IKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT-GLVSNVFNVKKRDNEMVQADHVRDSLL 532 (582)
Q Consensus 471 IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~-g~vl~tf~vKv~d~~~vsae~Ik~aL~ 532 (582)
|+|.+.+++|+|.+|+.+|.+.|..|.++++.... +.....|.+++.+. -....|.++|.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~--~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSE--EHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCH--HHHHHHHHHHh
Confidence 67889999999999999999999999999988764 67667788887664 33333444443
No 48
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.42 E-value=0.084 Score=41.80 Aligned_cols=47 Identities=17% Similarity=0.375 Sum_probs=37.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec-----CCEEEEEEEEEeC
Q 045155 471 IKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR-----TGLVSNVFNVKKR 517 (582)
Q Consensus 471 IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~-----~g~vl~tf~vKv~ 517 (582)
+.|.++++||.|.+|+++|.+.|++|.+.+.... .+.....|.+++.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~ 52 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR 52 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC
Confidence 3577889999999999999999999999887654 3556566677763
No 49
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.37 E-value=0.075 Score=63.85 Aligned_cols=72 Identities=24% Similarity=0.413 Sum_probs=59.3
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE-eecCCEEEEEEEEEeCCCccc-C----HHHHHHHHHHHHhCC
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANV-TSRTGLVSNVFNVKKRDNEMV-Q----ADHVRDSLLELTRNP 538 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnv-St~~g~vl~tf~vKv~d~~~v-s----ae~Ik~aL~~vir~~ 538 (582)
+...|.|.|.+++|+|++|..+|..+||+|+.|.| |+.+|.++.+|.+.-.++..+ . .+.|+++|..++...
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999999999999999998 567889999999987776543 2 344777887777543
No 50
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.05 E-value=0.018 Score=63.29 Aligned_cols=58 Identities=24% Similarity=0.328 Sum_probs=49.2
Q ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHhcCCC---CC-CCChhhHHHHHHHHHHHHHHHHHH
Q 045155 325 GKEPQSKNLVAERKRRKKLNDRLYALRALVPI---IT-KLDRATILVDAIEYVKQLQKQEKE 382 (582)
Q Consensus 325 ~~~~~~~h~~~ER~RR~~in~~~~~LrsLvP~---~~-K~dKasiL~~aI~YIk~Lq~~v~~ 382 (582)
.+++|..++..||-|-+.||+-|.+|-.+.-- .. .-.|.-||..|+.-|-.|++||.+
T Consensus 523 EkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 523 EKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999888642 22 235899999999999999999986
No 51
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.05 E-value=0.13 Score=42.17 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=55.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCc-ccCHHHHHHHHHHH
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNE-MVQADHVRDSLLEL 534 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~-~vsae~Ik~aL~~v 534 (582)
.|.|.|+++.|+=.+|.+.+-+.||.|+...+++.+.--+..|-+..+... .+.=+-+|++|.++
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 588999999999999999999999999999999999877777777655433 37778888888764
No 52
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.02 E-value=0.11 Score=62.23 Aligned_cols=72 Identities=21% Similarity=0.372 Sum_probs=58.8
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE-eecCCEEEEEEEEEeCCCcc---cCHHHHHHHHHHHHhCC
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANV-TSRTGLVSNVFNVKKRDNEM---VQADHVRDSLLELTRNP 538 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnv-St~~g~vl~tf~vKv~d~~~---vsae~Ik~aL~~vir~~ 538 (582)
+...|.|.|++++|+|++|.-+|..+||+|+.|.| |+.+|.++.+|.|.-.++.. -..+.|++.|.+++...
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~ 752 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQ 752 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999999999999999999 56789999999998665541 12455777777777553
No 53
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.61 E-value=0.21 Score=60.32 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=59.3
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEee-cCCEEEEEEEEEeCCCccc----CHHHHHHHHHHHHhC
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTS-RTGLVSNVFNVKKRDNEMV----QADHVRDSLLELTRN 537 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt-~~g~vl~tf~vKv~d~~~v----sae~Ik~aL~~vir~ 537 (582)
+...|.|.|.+++|+|.+|..+|..+|++|+.|.|.+ .+++++.+|.+.-.++... ..+.|++.|..++..
T Consensus 731 ~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~ 806 (931)
T PRK05092 731 GVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSG 806 (931)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999999999887 7889999999987666432 355677778777754
No 54
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.41 E-value=0.18 Score=41.05 Aligned_cols=62 Identities=15% Similarity=0.260 Sum_probs=45.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec-CCEEEEEEEEEeCCCcccCHHHHHHHHH
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR-TGLVSNVFNVKKRDNEMVQADHVRDSLL 532 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~-~g~vl~tf~vKv~d~~~vsae~Ik~aL~ 532 (582)
.|.|.+.+++|+|.+|+.+|.+.+.+|...+.+.. ++.....|.+++.+. ....++|.++|.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~-~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM-NGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch-HHHHHHHHHHHh
Confidence 47788899999999999999999999999987654 466666677776443 113344444443
No 55
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.25 E-value=0.22 Score=59.79 Aligned_cols=72 Identities=17% Similarity=0.280 Sum_probs=59.4
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEee-cCCEEEEEEEEEeCCCc-ccCHHHHHHHHHHHHhCC
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTS-RTGLVSNVFNVKKRDNE-MVQADHVRDSLLELTRNP 538 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt-~~g~vl~tf~vKv~d~~-~vsae~Ik~aL~~vir~~ 538 (582)
+...|.|.|.+++|+|++|..+|..+||+|+.|.|.+ .+|.++.+|.+.-.++. .-....|++.|.+++...
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLAGD 762 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcCC
Confidence 4578899999999999999999999999999999987 68999999999765553 223555777777777654
No 56
>PRK04435 hypothetical protein; Provisional
Probab=93.83 E-value=0.29 Score=46.39 Aligned_cols=68 Identities=12% Similarity=0.247 Sum_probs=52.0
Q ss_pred ecCceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEee-cCCEEEEEEEEEeCCCcccCHHHHHHHHH
Q 045155 464 LNGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTS-RTGLVSNVFNVKKRDNEMVQADHVRDSLL 532 (582)
Q Consensus 464 i~g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt-~~g~vl~tf~vKv~d~~~vsae~Ik~aL~ 532 (582)
..|+.+.|.+.+.+++|+|.+|+++|.+.+.+|...+.+. .++....+|.+++.+. ....++|.++|.
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-~~~L~~Li~~L~ 133 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-EGDIDELLEKLR 133 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-HHHHHHHHHHHH
Confidence 3478899999999999999999999999999999998765 3577777788877543 124444444443
No 57
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=93.33 E-value=0.23 Score=41.01 Aligned_cols=46 Identities=13% Similarity=0.313 Sum_probs=37.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCC
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRD 518 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d 518 (582)
.|+|.|.+|+|+|.+|+.+|.+.+..+.+.++.+. +. ..|.+++.+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~~ 47 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTIE 47 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEecC
Confidence 47889999999999999999999999999998775 44 335555543
No 58
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=93.33 E-value=0.45 Score=36.10 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=38.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC-CEEEEEEEEEeCC
Q 045155 471 IKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT-GLVSNVFNVKKRD 518 (582)
Q Consensus 471 IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~-g~vl~tf~vKv~d 518 (582)
|+|.+.+++|.+.+|++.|.++++++....+...+ +.....|.+++.+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 49 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD 49 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC
Confidence 46778899999999999999999999999887765 5555566666543
No 59
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=93.20 E-value=0.48 Score=33.95 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=31.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC
Q 045155 471 IKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT 505 (582)
Q Consensus 471 IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~ 505 (582)
|.|.|+.++|.+.+|+..|...++.|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788899999999999999999999999987654
No 60
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.07 E-value=0.67 Score=37.10 Aligned_cols=48 Identities=13% Similarity=0.332 Sum_probs=38.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC--CEEEEEEEEEe
Q 045155 469 FFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT--GLVSNVFNVKK 516 (582)
Q Consensus 469 v~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~--g~vl~tf~vKv 516 (582)
++|+|.+.+++|+|.+|+..|.+.+..+...+..... +.....|..++
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~ 50 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE 50 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc
Confidence 4789999999999999999999999999999876643 54544555553
No 61
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=92.37 E-value=0.76 Score=48.29 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=54.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHhCCc
Q 045155 468 EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPA 539 (582)
Q Consensus 468 ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~~ 539 (582)
.+.|.|.|++|||+..+|-..|.+++++|...+..+..+.-++++.+++.-....+.++++++|..+-.+-.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~~l~ 78 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAARFG 78 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999999999874333222233444432223779999999998876543
No 62
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=92.28 E-value=0.95 Score=47.52 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=58.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEee--cCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHhCCchh
Q 045155 468 EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTS--RTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPARE 541 (582)
Q Consensus 468 ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt--~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~~~~ 541 (582)
.+.|.|.|++|||+..+|-++|.++|++|...+.++ .++.+.-.+.+.+. ....+.++++++|..+-.+-.-.
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~-~~~~~~~~L~~~L~~l~~~l~l~ 80 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD-GLIFNLETLRADFAALAEEFEMD 80 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHhCCE
Confidence 578999999999999999999999999999999999 88865555555552 22356889999998877654433
No 63
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.99 E-value=0.99 Score=35.59 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=34.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC-CEEEEEE
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT-GLVSNVF 512 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~-g~vl~tf 512 (582)
.|.|.+.+++|.|.+|+..|.+.++.|.+.+....+ +....+|
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i 45 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYM 45 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEE
Confidence 467889999999999999999999999998887653 4443333
No 64
>PRK08577 hypothetical protein; Provisional
Probab=91.67 E-value=1.3 Score=41.21 Aligned_cols=66 Identities=15% Similarity=0.281 Sum_probs=49.8
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC--CEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT--GLVSNVFNVKKRDNEMVQADHVRDSLLE 533 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~--g~vl~tf~vKv~d~~~vsae~Ik~aL~~ 533 (582)
+.+.|.|.+.+++|+|.+|+..|.+++.++.+.+..+.. +.....|.+.+.+. ....+++.+.|..
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~-~~~l~~l~~~L~~ 122 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS-DIDLEELEEELKK 122 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc-hhhHHHHHHHHHc
Confidence 368899999999999999999999999999998877643 45555677777654 1344556655543
No 65
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=91.61 E-value=1.2 Score=36.67 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=37.4
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCC-EEEEEEEEEeCC
Q 045155 473 VFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTG-LVSNVFNVKKRD 518 (582)
Q Consensus 473 I~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g-~vl~tf~vKv~d 518 (582)
+..+++||.|.+|++.|.++|+.+++..+....+ .--+.|.+.+..
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~ 50 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEG 50 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEEC
Confidence 4456799999999999999999999998776654 556677777755
No 66
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=91.16 E-value=1.4 Score=46.18 Aligned_cols=70 Identities=7% Similarity=0.100 Sum_probs=55.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC--CEEEEEEEEEeCCCcccCHHHHHHHHHHHHhCCch
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT--GLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAR 540 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~--g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~~~ 540 (582)
.|.|.|++++|+..+|-..|-++|++|+.++.+... ++++-.+.+.+.+. ..+.++++++|..++.+.+.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~-~~~~~~l~~~l~~~~~~~~~ 73 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF-RLEESSLLAAFKSALAEKFE 73 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC-CCCHHHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999999988854 66666666665432 47889999999994444443
No 67
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=91.12 E-value=0.95 Score=47.64 Aligned_cols=76 Identities=13% Similarity=0.256 Sum_probs=55.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEe--ecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHhCCchhhh
Q 045155 468 EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVT--SRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAREWI 543 (582)
Q Consensus 468 ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvS--t~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~~~~~~ 543 (582)
.+.|.|.|++|+|+..+|-..|-++|++|+.++-. +..+.++..+.+.......++.++++++|..+-.+-.-.|.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l~~~ 86 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDMQWA 86 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 47899999999999999999999999999999986 33344443333332222247889999999987655333443
No 68
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=90.96 E-value=2.2 Score=35.64 Aligned_cols=63 Identities=22% Similarity=0.386 Sum_probs=46.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC-CEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 045155 471 IKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT-GLVSNVFNVKKRDNEMVQADHVRDSLLELT 535 (582)
Q Consensus 471 IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~-g~vl~tf~vKv~d~~~vsae~Ik~aL~~vi 535 (582)
|.+..++++|.|.+|++.|.++|+.+++..+.... +...+.|.+..... ...+.+.+.|..+-
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~--~~~~~~~~~l~~l~ 67 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH--IEDPNVAEALEELK 67 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC--CCCHHHHHHHHHHH
Confidence 44455679999999999999999999999877654 45667888877643 44566666665443
No 69
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=90.61 E-value=1.4 Score=34.55 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=38.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec--CCEEEEEEEEEe
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR--TGLVSNVFNVKK 516 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~--~g~vl~tf~vKv 516 (582)
.|.|...+++|+|.+|+..|.+.++.+.+.+.... ++.....|.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 46677889999999999999999999999988764 455656666664
No 70
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=90.38 E-value=1.5 Score=34.13 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=43.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC--CEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 045155 471 IKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT--GLVSNVFNVKKRDNEMVQADHVRDSLLE 533 (582)
Q Consensus 471 IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~--g~vl~tf~vKv~d~~~vsae~Ik~aL~~ 533 (582)
+.|...+++|.+.+|+..|.+.++.|.+..+.... +.....|.+ .+ ...+.+.+.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~---~~~~~l~~~l~~ 61 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DS---PVPEEVLEELKA 61 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CC---CCCHHHHHHHHc
Confidence 56778899999999999999999999999987754 566556655 22 134556666554
No 71
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.32 E-value=1.2 Score=34.89 Aligned_cols=56 Identities=21% Similarity=0.404 Sum_probs=38.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC--CEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 045155 471 IKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT--GLVSNVFNVKKRDNEMVQADHVRDSLLE 533 (582)
Q Consensus 471 IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~--g~vl~tf~vKv~d~~~vsae~Ik~aL~~ 533 (582)
|.|.-+++||.|.+|+..|.+.|+.|.+....... +.....| ++.+ .+++.+.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~--~ve~-----~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIF--RTED-----IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEE--EeCC-----HHHHHHHHHH
Confidence 55667789999999999999999999887765443 4443344 3332 4455555443
No 72
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.21 E-value=1.5 Score=34.42 Aligned_cols=58 Identities=14% Similarity=0.255 Sum_probs=40.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec--CCEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 045155 471 IKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR--TGLVSNVFNVKKRDNEMVQADHVRDSLLE 533 (582)
Q Consensus 471 IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~--~g~vl~tf~vKv~d~~~vsae~Ik~aL~~ 533 (582)
|.+.+.+++|.|.+|+..|.++++.+.+...... ++.....| .+.+. ...++.++|.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i--~v~~~---~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVI--EVDQP---IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEE--EeCCC---CCHHHHHHHHc
Confidence 5678889999999999999999999999887652 34443333 44332 44455555543
No 73
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=90.16 E-value=2.1 Score=34.28 Aligned_cols=45 Identities=20% Similarity=0.467 Sum_probs=36.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEe
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKK 516 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv 516 (582)
.|.|..+++||.|.+|+++|.+.|+.|.+.-+...++. .++++..
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 35567789999999999999999999999887766553 5566665
No 74
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.73 E-value=2 Score=34.98 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=34.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec---CCEEEEEEEEEe
Q 045155 471 IKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR---TGLVSNVFNVKK 516 (582)
Q Consensus 471 IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~---~g~vl~tf~vKv 516 (582)
+.|.-+++||.|.+|++.|.++|..|++...... .+.-...+++..
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~ 50 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTP 50 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEE
Confidence 4556678999999999999999999999987765 234444555554
No 75
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.58 E-value=1.9 Score=34.56 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=30.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR 504 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~ 504 (582)
.+.|.+++++|.|.+|+..|.++|++|........
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 46778889999999999999999999998876654
No 76
>PRK07334 threonine dehydratase; Provisional
Probab=89.48 E-value=1.4 Score=48.20 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=45.0
Q ss_pred CceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec-----CCEEEEEEEEEeCC
Q 045155 466 GNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR-----TGLVSNVFNVKKRD 518 (582)
Q Consensus 466 g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~-----~g~vl~tf~vKv~d 518 (582)
+-.+.|+|.+.+|+|+|.+|+.+|.+.+++|.++++.+. ++.....|.+++++
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d 381 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD 381 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC
Confidence 335889999999999999999999999999999998764 56766777788755
No 77
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=88.72 E-value=0.26 Score=46.92 Aligned_cols=51 Identities=31% Similarity=0.435 Sum_probs=45.0
Q ss_pred CccccHHHHHHHHHHHHHHHHHHhcCCC--CCCCChhhHHHHHHHHHHHHHHH
Q 045155 329 QSKNLVAERKRRKKLNDRLYALRALVPI--ITKLDRATILVDAIEYVKQLQKQ 379 (582)
Q Consensus 329 ~~~h~~~ER~RR~~in~~~~~LrsLvP~--~~K~dKasiL~~aI~YIk~Lq~~ 379 (582)
+.-|++.||+|=..+|+-|..||.++|. ..|.+|.--|.-|..||-.|-+-
T Consensus 79 rv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~v 131 (173)
T KOG4447|consen 79 RVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 131 (173)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhc
Confidence 3459999999999999999999999996 57889999999999999988653
No 78
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.36 E-value=6.2 Score=31.58 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=41.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec--CCEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR--TGLVSNVFNVKKRDNEMVQADHVRDSLLE 533 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~--~g~vl~tf~vKv~d~~~vsae~Ik~aL~~ 533 (582)
.|.+..++++|.|.+|++.|.+.++.|.+...... ++.....|++...+ .+++.+.|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~-----~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN-----PRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC-----HHHHHHHHHH
Confidence 56677889999999999999999999998865443 34555566665422 3455555543
No 79
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=86.36 E-value=2 Score=42.56 Aligned_cols=67 Identities=9% Similarity=0.114 Sum_probs=54.7
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
..++|.+.+++|||+..+|-++|.++|..++.++.+..++.+--++.+... .....+++.+|..+-.
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~---~~~~~~le~~L~~l~~ 73 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS---WNAITLIESTLPLKGA 73 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC---hhHHHHHHHHHHhhhh
Confidence 457888999999999999999999999999999999999977666666432 2466777777776653
No 80
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=86.32 E-value=1.5 Score=38.44 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=56.0
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 468 EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 468 ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
.++|.|.-.+|+|+...|..+|.++|+++++.+=|-.++++...+.+..... ..+...+++.|.....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~-~~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKE-VVDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChH-hccHHHHHHHHHHHHH
Confidence 3678888889999999999999999999999999999998877777765432 4777778877776543
No 81
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=85.69 E-value=3.1 Score=32.04 Aligned_cols=45 Identities=20% Similarity=0.379 Sum_probs=35.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC-CEEEEEEEEE
Q 045155 471 IKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT-GLVSNVFNVK 515 (582)
Q Consensus 471 IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~-g~vl~tf~vK 515 (582)
|.|..+++||.|.+|+..|.+.++.|....+...+ +..+..|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 35678899999999999999999999888877655 5555555544
No 82
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.65 E-value=7.1 Score=34.10 Aligned_cols=63 Identities=8% Similarity=0.107 Sum_probs=45.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCC-EEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 045155 469 FFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTG-LVSNVFNVKKRDNEMVQADHVRDSLLEL 534 (582)
Q Consensus 469 v~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g-~vl~tf~vKv~d~~~vsae~Ik~aL~~v 534 (582)
..|-+..++++|.|.+||..|...|+.+++..+-...+ ..-|.|.+.+... ....++++|.++
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~---~~~~~~~~l~~L 78 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK---SAPALDPIIKSL 78 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC---CCHHHHHHHHHH
Confidence 34444557899999999999999999999999887653 4557788887653 134555555444
No 83
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=84.96 E-value=6.1 Score=32.76 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=45.6
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCC-EEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 473 VFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTG-LVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 473 I~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g-~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
+..++++|.|.+||..+...|+.+++..+-...+ ..-|.|.+.+.. ..+.++++|.++-.
T Consensus 5 f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~----~~~~~~~~l~~L~~ 65 (74)
T cd04904 5 FSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV----DRGDLDQLISSLRR 65 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc----ChHHHHHHHHHHHH
Confidence 3446799999999999999999999999887664 455777787764 33456666666543
No 84
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=84.64 E-value=0.76 Score=51.62 Aligned_cols=41 Identities=32% Similarity=0.631 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC----CCCCChhhHHHHHHHHHH
Q 045155 334 VAERKRRKKLNDRLYALRALVPI----ITKLDRATILVDAIEYVK 374 (582)
Q Consensus 334 ~~ER~RR~~in~~~~~LrsLvP~----~~K~dKasiL~~aI~YIk 374 (582)
---++-|+|+|.-++.|.+|+|. ++|.||.|||.=++.|++
T Consensus 31 NPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 31 NPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred CcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 34477889999999999999996 689999999999999986
No 85
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.34 E-value=5 Score=47.62 Aligned_cols=60 Identities=25% Similarity=0.368 Sum_probs=51.7
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEee-cCCEEEEEEEEEeCCCcccCHHH
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTS-RTGLVSNVFNVKKRDNEMVQADH 526 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt-~~g~vl~tf~vKv~d~~~vsae~ 526 (582)
....|-|.|+++|.+|+.|..++...|++|+.|+|-+ .+|+.+.+|.+.-.++..+..+.
T Consensus 683 ~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr 743 (867)
T COG2844 683 GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDR 743 (867)
T ss_pred CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhH
Confidence 4578899999999999999999999999999999875 67899999999877776666443
No 86
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=83.71 E-value=1.2 Score=35.53 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=39.3
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHH
Q 045155 472 KVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLL 532 (582)
Q Consensus 472 kI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~ 532 (582)
-+.+.+++|+|.+|+..|.+.+..+...+....++.....|.+.+. ..+++-++|.
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~-----~l~~li~~l~ 58 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE-----VSEELLEALR 58 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC-----CCHHHHHHHH
Confidence 3467889999999999999999999887665555555555554443 3444444444
No 87
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=82.64 E-value=4.4 Score=35.95 Aligned_cols=61 Identities=15% Similarity=0.340 Sum_probs=36.7
Q ss_pred eeeeccCCceeeeccCC---cchHHH-hhcCCeEEEEee-CC----cEEeecccccccCChHHHHHHHHHc
Q 045155 97 AQSLISNQPRWLNFSNS---ADLEVM-EETLWTRVLIPI-MG----GLIELFATKEVSEDPHVIDFIIAQC 158 (582)
Q Consensus 97 G~~~~sg~~~Wi~~~~~---~~~~~~-~~gIqTiv~iPv-~~----GVvELGS~~~i~Ed~~~v~~vk~~f 158 (582)
+.++.+++++|+. .+. ...... ..||+.++|||+ .+ |||.|++...-.=+..-++.++.+.
T Consensus 71 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~~~~l~~la 140 (148)
T PF13185_consen 71 EGVLRTGEPIIIN-DDDSSFPPWELARHPGIRSILCVPLRSGGEVIGVLSLYSKEPNAFSEEDLELLEALA 140 (148)
T ss_dssp SHHHHHTS-EEES-CCCGGGSTTHHHCCTT-SEEEEEEEEETTEEEEEEEEEESSTT---HHHHHHHHHHH
T ss_pred HHHHhcCceEEEe-CccccccchhhhccccCCEEEEEEEeECCEEEEEEEEeeCCCCCcCHHHHHHHHHHH
Confidence 3348899999994 122 111222 239999999999 33 8999999877666666565555543
No 88
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=82.32 E-value=5.3 Score=39.16 Aligned_cols=64 Identities=14% Similarity=0.302 Sum_probs=49.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEee--cCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTS--RTGLVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt--~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
.|.|.-+++||+|.+|...|...|++|.+.++.. ..+....+|. +.++... .++|++.|.+++.
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIv--v~~~~~~-ieqL~kQL~KLid 69 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMV--VPGDDRT-IEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEE--EECCHHH-HHHHHHHHHHHhH
Confidence 5777788999999999999999999999999976 3344444444 4343233 7899999998874
No 89
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=82.01 E-value=4.1 Score=35.36 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=47.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC--CEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT--GLVSNVFNVKKRDNEMVQADHVRDSLLELT 535 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~--g~vl~tf~vKv~d~~~vsae~Ik~aL~~vi 535 (582)
.|.+.-++++|+|.+|-..|...|+.+.+.++.... +....+|.+...+ .-..++|...|.+++
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d--~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD--DTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC--HHHHHHHHHHHhCCc
Confidence 577778899999999999999999999888888655 4555566665333 355566777666554
No 90
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=81.51 E-value=5.1 Score=50.89 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=63.5
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC-----CEEEEEEEEEeCCCcccCHHHHHHHHHHHHhCCchh
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT-----GLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPARE 541 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~-----g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~~~~ 541 (582)
..+.++|....++..|++||-.|+++||.|+...-..+. ...++.|.+...++.....+.+++.|.+++.+...+
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v~~g 567 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAVWNG 567 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999999999997644332 367888999988887788999999999988766554
Q ss_pred hh
Q 045155 542 WI 543 (582)
Q Consensus 542 ~~ 543 (582)
+.
T Consensus 568 ~~ 569 (1528)
T PF05088_consen 568 RA 569 (1528)
T ss_pred CC
Confidence 43
No 91
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=81.01 E-value=7.4 Score=33.05 Aligned_cols=62 Identities=16% Similarity=0.253 Sum_probs=47.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec--CCEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR--TGLVSNVFNVKKRDNEMVQADHVRDSLLELT 535 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~--~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vi 535 (582)
.|.+.-.++||.|.+|+..++.-|+.|.+.++... ++....+|.+. + .-..+.|...|.+++
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~--~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S--ERPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C--CchHHHHHHHHhcCc
Confidence 56666778999999999999999999999998874 45555566553 3 466777777777654
No 92
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=80.73 E-value=5.5 Score=38.37 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=49.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC--CEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT--GLVSNVFNVKKRDNEMVQADHVRDSLLELT 535 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~--g~vl~tf~vKv~d~~~vsae~Ik~aL~~vi 535 (582)
.|.|.-+++||.|.+|...|...|+.+.+..+...+ +....+|.+.- + .-..++|...|.+++
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~-d--~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG-D--DKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC-C--HHHHHHHHHHHhcCc
Confidence 567778899999999999999999999999988765 56666777763 2 346677777777665
No 93
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=80.72 E-value=7.4 Score=36.63 Aligned_cols=67 Identities=10% Similarity=0.165 Sum_probs=52.8
Q ss_pred CceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEe-ecCCEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 045155 466 GNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVT-SRTGLVSNVFNVKKRDNEMVQADHVRDSLLE 533 (582)
Q Consensus 466 g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvS-t~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~ 533 (582)
++.+.+.+.-++|-|.|+++|+++...++.|++.+=+ ..+|+.--++....... ..+.+.|..+|..
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm-~~~V~~ii~kl~k 137 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSM-EKDVDKIIEKLRK 137 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhh-hhhHHHHHHHHhc
Confidence 4567788888999999999999999999999998876 68888777777766522 3566667666654
No 94
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.61 E-value=8.9 Score=31.01 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=33.5
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC-CEEEEEEEEEeCC
Q 045155 472 KVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT-GLVSNVFNVKKRD 518 (582)
Q Consensus 472 kI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~-g~vl~tf~vKv~d 518 (582)
+|.-+.+||-|.++++.|.+ +.+|+..+....+ +.....+.+++++
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~ 48 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD 48 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC
Confidence 46667899999999999999 9999998887643 2222334455543
No 95
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=80.16 E-value=8.8 Score=38.07 Aligned_cols=67 Identities=9% Similarity=0.166 Sum_probs=51.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC----C--EEEEEEEEEeCCCcccCHHHHHHHHHHHHhC
Q 045155 469 FFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT----G--LVSNVFNVKKRDNEMVQADHVRDSLLELTRN 537 (582)
Q Consensus 469 v~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~----g--~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~ 537 (582)
+.|.|.-.+|||++.+|-+.|.++|++|.+.+.-+.+ + .+.-.+.+.+..+ +..++++++|.++-.+
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~--~~~~~L~~~l~~l~~e 168 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS--QDAANIEQAFKALCTE 168 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC--CCHHHHHHHHHHHHHH
Confidence 5666677789999999999999999999998877654 3 3334455555555 7788999999887654
No 96
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=79.81 E-value=2.4 Score=43.94 Aligned_cols=51 Identities=35% Similarity=0.438 Sum_probs=43.2
Q ss_pred CccccHHHHHHHHHHHHHHHHHHhcCCC---CCCCChhhHHHHHHHHHHHHHHH
Q 045155 329 QSKNLVAERKRRKKLNDRLYALRALVPI---ITKLDRATILVDAIEYVKQLQKQ 379 (582)
Q Consensus 329 ~~~h~~~ER~RR~~in~~~~~LrsLvP~---~~K~dKasiL~~aI~YIk~Lq~~ 379 (582)
|.+=+..||+|--.+|+-|+.||.++|. ..|+.|.-.|.-|-+||..|++-
T Consensus 73 R~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 73 RLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred cccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 3445778998888999999999999994 57888999999999999888753
No 97
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=78.55 E-value=6.9 Score=31.20 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=34.8
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEEee--cCCEEEEEEEEE
Q 045155 472 KVFCEHKPGGFVRLMEALNSLGLEVTNANVTS--RTGLVSNVFNVK 515 (582)
Q Consensus 472 kI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt--~~g~vl~tf~vK 515 (582)
-+..++++|.+.+|.+.|.+.|+.+.+..+.. .++.....|.+.
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 45678899999999999999999998887655 346666666554
No 98
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=78.54 E-value=9.9 Score=44.83 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=62.0
Q ss_pred EEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHhCCch
Q 045155 469 FFIKVF-CEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAR 540 (582)
Q Consensus 469 v~IkI~-C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~~~ 540 (582)
..+.|. +++++|.|+++...|--+++.|.+|++.+ +|..+..|.|...-+...++..+++.+...+....+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELP 618 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCC
Confidence 355554 48999999999999999999999999999 888889999998888889999999999988876654
No 99
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=78.49 E-value=6.6 Score=46.59 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=49.2
Q ss_pred EEEEEecC--c--eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec--CCEEEEEEEEEeCCC
Q 045155 459 VEVAQLNG--N--EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR--TGLVSNVFNVKKRDN 519 (582)
Q Consensus 459 VeV~~i~g--~--ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~--~g~vl~tf~vKv~d~ 519 (582)
|+|.+-.. . .+.|.|.+.+|+|+|.+|..+|.+.++.|.++++.+. ++.....|.++|.+-
T Consensus 653 I~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~ 719 (743)
T PRK10872 653 VDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNL 719 (743)
T ss_pred EEeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCH
Confidence 77776321 1 3578899999999999999999999999999998875 467777788888664
No 100
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=78.26 E-value=7.9 Score=32.92 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=46.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC--CEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 045155 469 FFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT--GLVSNVFNVKKRDNEMVQADHVRDSLLELT 535 (582)
Q Consensus 469 v~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~--g~vl~tf~vKv~d~~~vsae~Ik~aL~~vi 535 (582)
..|.+.-+++||+|.+|...+..-|+.|.+.++...+ +....+|.+. .+ .-..++|...|.+++
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~-~~--~~~i~qi~kQL~KLi 68 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV-CT--ENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE-CC--HHHHHHHHHHHhCCc
Confidence 3577778899999999999999999999999888655 4555566554 22 245556666665543
No 101
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=76.98 E-value=8.9 Score=37.13 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=48.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC--CEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT--GLVSNVFNVKKRDNEMVQADHVRDSLLELT 535 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~--g~vl~tf~vKv~d~~~vsae~Ik~aL~~vi 535 (582)
.|.|.-+++||.|.+|...|...|+.|.+..+.... +....+|.+.-. .-..++|...|.+++
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~---~~~i~qi~kQl~KLi 68 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGD---EQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECC---HHHHHHHHHHHhccc
Confidence 567778899999999999999999999999988654 566667766632 245667777776665
No 102
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=76.67 E-value=2.5 Score=46.19 Aligned_cols=42 Identities=38% Similarity=0.611 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC----CCCCChhhHHHHHHHHHHHH
Q 045155 335 AERKRRKKLNDRLYALRALVPI----ITKLDRATILVDAIEYVKQL 376 (582)
Q Consensus 335 ~ER~RR~~in~~~~~LrsLvP~----~~K~dKasiL~~aI~YIk~L 376 (582)
+-|.||++-|-.|..|..++|- .+..||++|+.-|..|||--
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 6699999999999999999995 36799999999999999853
No 103
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=74.73 E-value=4 Score=42.05 Aligned_cols=55 Identities=27% Similarity=0.234 Sum_probs=45.8
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 045155 327 EPQSKNLVAERKRRKKLNDRLYALRALVPII---TKLDRATILVDAIEYVKQLQKQEK 381 (582)
Q Consensus 327 ~~~~~h~~~ER~RR~~in~~~~~LrsLvP~~---~K~dKasiL~~aI~YIk~Lq~~v~ 381 (582)
.++..-+..||+|-..+|.-|+.||..||.. .|.+|--.|.-|-.||--|-..+.
T Consensus 173 ~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 173 HRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 4556678899999999999999999999964 567788889999999988765543
No 104
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=73.65 E-value=9.5 Score=45.05 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=48.8
Q ss_pred EEEEEecC--c--eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC-CEEEEEEEEEeCCC
Q 045155 459 VEVAQLNG--N--EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT-GLVSNVFNVKKRDN 519 (582)
Q Consensus 459 VeV~~i~g--~--ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~-g~vl~tf~vKv~d~ 519 (582)
|.|.+-.+ . .+.|+|.+.+++|+|.+|+.+|.+.++.|.++++.+.+ +.....|.++|.+-
T Consensus 613 i~v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~ 678 (702)
T PRK11092 613 MAVEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDR 678 (702)
T ss_pred EEeEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCH
Confidence 66776422 2 35788999999999999999999999999999987765 46666788888663
No 105
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=72.99 E-value=10 Score=44.69 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=49.6
Q ss_pred eEEEEEecC--c--eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec-CCEEEEEEEEEeCCC
Q 045155 458 QVEVAQLNG--N--EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR-TGLVSNVFNVKKRDN 519 (582)
Q Consensus 458 qVeV~~i~g--~--ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~-~g~vl~tf~vKv~d~ 519 (582)
-|.|.+-.. . .+.|+|.+.+++|+|.+|+.+|.+.+..|.++++.+. ++.....|.++|.+-
T Consensus 596 ~I~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~ 662 (683)
T TIGR00691 596 IIEVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNY 662 (683)
T ss_pred EEEEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCH
Confidence 367776321 1 3578899999999999999999999999999999876 466666788888653
No 106
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=72.98 E-value=6.8 Score=31.77 Aligned_cols=55 Identities=16% Similarity=0.293 Sum_probs=39.9
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEee--cCCEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 045155 477 HKPGGFVRLMEALNSLGLEVTNANVTS--RTGLVSNVFNVKKRDNEMVQADHVRDSLLEL 534 (582)
Q Consensus 477 kr~glL~~Im~aLeeLgLdVvsAnvSt--~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~v 534 (582)
++||.|.+|+..+..-|+.|.+.++.. .++....+|.+.-. .-..+.|...|.++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~---~~~i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD---DREIEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES----CCHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC---chhHHHHHHHHhcc
Confidence 479999999999999999999999998 55666666666532 24555666666544
No 107
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.66 E-value=24 Score=29.60 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=43.8
Q ss_pred cCCCCChHHHHHHHHHhCCCeEEEEEEeecC-CEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 045155 475 CEHKPGGFVRLMEALNSLGLEVTNANVTSRT-GLVSNVFNVKKRDNEMVQADHVRDSLLELT 535 (582)
Q Consensus 475 C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~-g~vl~tf~vKv~d~~~vsae~Ik~aL~~vi 535 (582)
.++++|.|.++|..++..|+.+++..+-... ...-|.|-+.+... .+.++++|.++-
T Consensus 7 l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~----~~~i~~~l~~l~ 64 (74)
T cd04929 7 LKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD----QRRLDELVQLLK 64 (74)
T ss_pred cCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC----HHHHHHHHHHHH
Confidence 3678999999999999999999999988754 34567777877543 236777776553
No 108
>PRK08198 threonine dehydratase; Provisional
Probab=72.38 E-value=18 Score=39.51 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=42.4
Q ss_pred CceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec-----CCEEEEEEEEEeC
Q 045155 466 GNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR-----TGLVSNVFNVKKR 517 (582)
Q Consensus 466 g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~-----~g~vl~tf~vKv~ 517 (582)
++.+.+.|.-+++||.|.+|++.|.+.|..|+.++.... .+.+...+.++++
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~ 381 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETR 381 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeC
Confidence 667889999999999999999999999999999887742 3455566666653
No 109
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.21 E-value=26 Score=29.76 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=41.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC-CEEEEEEEEEeCCCcccCHHHHHHHHHHHHhCCch
Q 045155 469 FFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT-GLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAR 540 (582)
Q Consensus 469 v~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~-g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~~~ 540 (582)
.++.|.-+++||-|.+++++|- +.+|......... +.....|.++++++ .+++.+.+..+....|.
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~----~~~~~~i~~~L~~~G~~ 68 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG----AEELAELLEDLKSAGYE 68 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc----HHHHHHHHHHHHHCCCC
Confidence 4678888999999999999998 6677766655432 33334455565542 34444444444444453
No 110
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=71.78 E-value=20 Score=38.69 Aligned_cols=66 Identities=15% Similarity=0.289 Sum_probs=47.6
Q ss_pred cCceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec-----CCEEEEEEEEEeCCCcccCHHHHHHHHH
Q 045155 465 NGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR-----TGLVSNVFNVKKRDNEMVQADHVRDSLL 532 (582)
Q Consensus 465 ~g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~-----~g~vl~tf~vKv~d~~~vsae~Ik~aL~ 532 (582)
.++.+.|.|.-+++||.|.+|++.|.+.+.+|++...... .+....+|.++..+ .-..++|.++|.
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~--~~~~~~i~~~L~ 372 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG--KEHLDEILKILR 372 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC--HHHHHHHHHHHH
Confidence 3677889999999999999999999999999999876632 24555666666543 123334444443
No 111
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=70.30 E-value=3.2 Score=48.10 Aligned_cols=42 Identities=38% Similarity=0.651 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC----CCCCChhhHHHHHHHHHHH
Q 045155 334 VAERKRRKKLNDRLYALRALVPI----ITKLDRATILVDAIEYVKQ 375 (582)
Q Consensus 334 ~~ER~RR~~in~~~~~LrsLvP~----~~K~dKasiL~~aI~YIk~ 375 (582)
-+-|-||-|=|+-|+.|..+||- ..-.|||+|+--||.|++-
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 46799999999999999999994 3678999999999999874
No 112
>PRK06382 threonine dehydratase; Provisional
Probab=69.17 E-value=22 Score=39.01 Aligned_cols=52 Identities=29% Similarity=0.431 Sum_probs=42.0
Q ss_pred CceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEe-----ecCCEEEEEEEEEeC
Q 045155 466 GNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVT-----SRTGLVSNVFNVKKR 517 (582)
Q Consensus 466 g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvS-----t~~g~vl~tf~vKv~ 517 (582)
++.+.|.|.-+++||.|.+|++.|.+.+.+|+++... ...+....+|.++..
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~ 384 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR 384 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC
Confidence 6778888889999999999999999999999988764 223456666777764
No 113
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=68.99 E-value=21 Score=37.40 Aligned_cols=68 Identities=16% Similarity=0.311 Sum_probs=50.3
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC--CEEEEEEEEEeCCCc-ccCHHHHHHHHHHHHh
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT--GLVSNVFNVKKRDNE-MVQADHVRDSLLELTR 536 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~--g~vl~tf~vKv~d~~-~vsae~Ik~aL~~vir 536 (582)
..+.+.+.|++++|+...|-.-|-+.|..|+.++-.+.. ++++. ++++..+. ..+.+.+++.+-.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFm--R~~f~~~~~~~~~~~l~~~f~~~a~ 76 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFM--RVEFEGEGGPLDREALRAAFAPLAE 76 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEE--EEEEecCCCcccHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999877432 33333 33433322 3778888888877443
No 114
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=67.90 E-value=15 Score=43.72 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=71.5
Q ss_pred HHHHHHHHhccCCCCCcEEEEeeecCCCceEEEcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchhhhHhhc
Q 045155 5 QTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQ 84 (582)
Q Consensus 5 ~~Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s~~~~~~d~~~~~~~t~~~~~l~~ 84 (582)
+.|+..++.++.-.+.++|..|-+..+...|...- - .|... + +...
T Consensus 20 e~L~~Iv~~~~~~l~~d~~sI~L~D~~~~~L~~~a-s-~Gl~~------~--------------------------~~~~ 65 (748)
T PRK11061 20 EALDILVTETCLAMDTEVCSVYLADHDRRCYYLMA-T-RGLKK------P--------------------------RGRT 65 (748)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEE-e-eCCCh------H--------------------------hccc
Confidence 45666677777777999999998866643332110 0 01000 0 0011
Q ss_pred ccccccCCCcceeeeeccCCceeeeccCC-cchH------HHhhcCCeEEEEeeCC-----cEEeecccccccCChHHHH
Q 045155 85 LPSSMPLDSGIYAQSLISNQPRWLNFSNS-ADLE------VMEETLWTRVLIPIMG-----GLIELFATKEVSEDPHVID 152 (582)
Q Consensus 85 M~~s~~~g~G~~G~~~~sg~~~Wi~~~~~-~~~~------~~~~gIqTiv~iPv~~-----GVvELGS~~~i~Ed~~~v~ 152 (582)
..++.|+|+.|+++.++.+++| .+. .++. ....++...++||+.. |||.+...+.-.-+.+-+.
T Consensus 66 --~~l~~geGi~G~Va~tg~pV~V--~Dv~~dprf~~~~~~~~~~~~S~L~VPL~~~geVIGVL~v~~~~~~~Fs~~d~~ 141 (748)
T PRK11061 66 --VTLAFDEGIVGLVGRLAEPINL--ADAQKHPSFKYIPSVKEERFRAFLGVPIIYRRQLLGVLVVQQRELRQFDESEES 141 (748)
T ss_pred --eeccCCcchHHHHhccCceEEE--CCcccCcccccCccccCccceEEEEEEEeeCCEEEEEEEEeeCCCCCCCHHHHH
Confidence 1367799999999999999999 553 2222 1234899999999933 6777777665545444444
Q ss_pred HHHHHc
Q 045155 153 FIIAQC 158 (582)
Q Consensus 153 ~vk~~f 158 (582)
.+..+.
T Consensus 142 lL~~LA 147 (748)
T PRK11061 142 FLVTLA 147 (748)
T ss_pred HHHHHH
Confidence 444444
No 115
>PRK11899 prephenate dehydratase; Provisional
Probab=64.72 E-value=43 Score=35.20 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=51.5
Q ss_pred EcCCCCChHHHHHHHHHhCCCeEEEEEEeecC-CEEEEEEEEEeCCCcccCHHHHHHHHHHHHhCC
Q 045155 474 FCEHKPGGFVRLMEALNSLGLEVTNANVTSRT-GLVSNVFNVKKRDNEMVQADHVRDSLLELTRNP 538 (582)
Q Consensus 474 ~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~-g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~ 538 (582)
..+++||.|.+||.++...|+..+...+-... ...-|.|.+.+.+. .....++++|.++-+..
T Consensus 200 ~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~--~~d~~v~~aL~~l~~~~ 263 (279)
T PRK11899 200 RVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH--PEDRNVALALEELRFFS 263 (279)
T ss_pred EeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC--CCCHHHHHHHHHHHHhc
Confidence 33689999999999999999999999988765 45778899998774 55667888888876543
No 116
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=64.22 E-value=56 Score=25.30 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=27.0
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEeecC
Q 045155 470 FIKVFCE---HKPGGFVRLMEALNSLGLEVTNANVTSRT 505 (582)
Q Consensus 470 ~IkI~C~---kr~glL~~Im~aLeeLgLdVvsAnvSt~~ 505 (582)
.|.|.+. +.++++.+|+++|.+.++.|.-.+.+..+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~ 41 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSE 41 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 3455553 46899999999999999999777654433
No 117
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=63.88 E-value=29 Score=30.90 Aligned_cols=64 Identities=9% Similarity=0.144 Sum_probs=46.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC--CEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 045155 468 EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT--GLVSNVFNVKKRDNEMVQADHVRDSLLELT 535 (582)
Q Consensus 468 ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~--g~vl~tf~vKv~d~~~vsae~Ik~aL~~vi 535 (582)
...|.+.-+++||+|.+|.-.+..-|..|-+.++...+ +....+|.+. +. -..++|.+.|.+++
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~~--~~i~Qi~kQL~KLi 73 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--DD--QRLEQMISQIEKLE 73 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--Cc--hHHHHHHHHHhCCc
Confidence 45678888899999999999999998888888777654 4455566543 32 46666777666654
No 118
>PRK08526 threonine dehydratase; Provisional
Probab=63.87 E-value=31 Score=37.96 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=44.0
Q ss_pred cCceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCC-----EEEEEEEEEeCC
Q 045155 465 NGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTG-----LVSNVFNVKKRD 518 (582)
Q Consensus 465 ~g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g-----~vl~tf~vKv~d 518 (582)
.++.+.+.|.-+++||.|.++++.+-+.+.+|+.+....... .+...+.++.++
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~ 381 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKG 381 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCC
Confidence 478899999999999999999999999999999999866433 345556666654
No 119
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=62.99 E-value=2.1 Score=49.51 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=57.4
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHHHhcCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 045155 326 KEPQSKNLVAERKRRKKLNDRLYALRALVPII-----TKLDRATILVDAIEYVKQLQKQEKELKEELEENSD 392 (582)
Q Consensus 326 ~~~~~~h~~~ER~RR~~in~~~~~LrsLvP~~-----~K~dKasiL~~aI~YIk~Lq~~v~~L~~~~~~l~~ 392 (582)
+.++..|+-+|.+||..++-.|..|.++.-+. .|+.++.-+...+.||..++++...++++-..+++
T Consensus 649 k~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~ 720 (856)
T KOG3582|consen 649 KNRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRK 720 (856)
T ss_pred cCCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhh
Confidence 36778899999999999999999999999753 46677777999999999999999888888766665
No 120
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.44 E-value=50 Score=30.14 Aligned_cols=60 Identities=5% Similarity=0.029 Sum_probs=43.9
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCC-EEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 473 VFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTG-LVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 473 I~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g-~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
+..++++|.|.+||..+...|+.+++..+-...+ ..-|.|.+.+... .++++++|..+-.
T Consensus 46 fsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~----~~~~~~aL~~L~~ 106 (115)
T cd04930 46 FSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH----RSDLLQLISSLRQ 106 (115)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC----HHHHHHHHHHHHH
Confidence 3337799999999999999999999999887643 3456777777543 2346666655543
No 121
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=62.28 E-value=5.3 Score=45.23 Aligned_cols=71 Identities=10% Similarity=0.128 Sum_probs=52.3
Q ss_pred ccCCCcceeeeeccCCceeeeccCC-cchHH------HhhcCCeEEEEee-C----CcEEeeccccc----ccCChHHHH
Q 045155 89 MPLDSGIYAQSLISNQPRWLNFSNS-ADLEV------MEETLWTRVLIPI-M----GGLIELFATKE----VSEDPHVID 152 (582)
Q Consensus 89 ~~~g~G~~G~~~~sg~~~Wi~~~~~-~~~~~------~~~gIqTiv~iPv-~----~GVvELGS~~~----i~Ed~~~v~ 152 (582)
+..|+|+.|+|+.+++++++ .+. .+..+ ...|+++++|||+ . -|||.+.+... -.+|.+++.
T Consensus 69 ~~~~~gi~g~v~~~~~pvii--~Dv~~d~~~~~~~~~~~~~~~S~l~VPL~~~g~viGvL~v~s~~~~~~ft~~d~~lL~ 146 (534)
T TIGR01817 69 YRVGEGAIGQIVATGNSLVV--PDVAAEPLFLDRLSLYDPGPVPFIGVPIKADSETIGVLAADRDFRSRERLEEEVRFLE 146 (534)
T ss_pred ccCCccHHHHHHhcCCeEEe--cccccCchhhhccccccCCcceEEEEEEcCCCEEEEEEEEEeccccccccHHHHHHHH
Confidence 56689999999999999999 553 22221 1237899999999 3 36999998753 456777888
Q ss_pred HHHHHcccc
Q 045155 153 FIIAQCNIS 161 (582)
Q Consensus 153 ~vk~~f~~l 161 (582)
.+-.+.+..
T Consensus 147 ~lA~~ia~a 155 (534)
T TIGR01817 147 MVANLIGQT 155 (534)
T ss_pred HHHHHHHHH
Confidence 777776543
No 122
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=58.15 E-value=77 Score=23.75 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=27.0
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEee
Q 045155 470 FIKVFCE---HKPGGFVRLMEALNSLGLEVTNANVTS 503 (582)
Q Consensus 470 ~IkI~C~---kr~glL~~Im~aLeeLgLdVvsAnvSt 503 (582)
.|+|.+. .+++.+.+++++|.+.++.|.....+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4555543 568899999999999999998887654
No 123
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=53.51 E-value=59 Score=23.81 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.6
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEee
Q 045155 478 KPGGFVRLMEALNSLGLEVTNANVTS 503 (582)
Q Consensus 478 r~glL~~Im~aLeeLgLdVvsAnvSt 503 (582)
.+|.+.+++++|.+.++.|.....+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 68999999999999999998876554
No 124
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.34 E-value=69 Score=24.95 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=24.0
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEeecC
Q 045155 477 HKPGGFVRLMEALNSLGLEVTNANVTSRT 505 (582)
Q Consensus 477 kr~glL~~Im~aLeeLgLdVvsAnvSt~~ 505 (582)
.+++.+.+|+++|.+.+++|.-...++.+
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~s~ 41 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGASE 41 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 47899999999999999999777655433
No 125
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.02 E-value=1.4e+02 Score=24.91 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=35.2
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHhC
Q 045155 476 EHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRN 537 (582)
Q Consensus 476 ~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~ 537 (582)
+..+|.+.+|+++|.+.++.|-.... .... .+|.+.-.+ ...-+.++.+|..-+++
T Consensus 12 ~~~~g~~~~IF~~La~~~I~VDmI~~--s~~~--iSftv~~~d--~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLITT--SEIS--VALTLDNTG--STSDQLLTQALLKELSQ 67 (75)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEee--cCCE--EEEEEeccc--cchhHHHHHHHHHHHHh
Confidence 45799999999999999999998864 2222 334333222 11124455566655554
No 126
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.26 E-value=1.3e+02 Score=23.17 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=23.0
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEee
Q 045155 477 HKPGGFVRLMEALNSLGLEVTNANVTS 503 (582)
Q Consensus 477 kr~glL~~Im~aLeeLgLdVvsAnvSt 503 (582)
++++.+.+++.+|.+.+++|.-.+.+.
T Consensus 13 ~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 13 NTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 478999999999999999997776544
No 127
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=47.09 E-value=10 Score=36.46 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC--CCCChhhHHHHHHHHHHHH
Q 045155 335 AERKRRKKLNDRLYALRALVPII--TKLDRATILVDAIEYVKQL 376 (582)
Q Consensus 335 ~ER~RR~~in~~~~~LrsLvP~~--~K~dKasiL~~aI~YIk~L 376 (582)
.||.|.+++++.+..|++|+|+. .++.+.--|.-+-+||..|
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~ 72 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSL 72 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhH
Confidence 68999999999999999999974 3333322255555555544
No 128
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=45.80 E-value=30 Score=40.96 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=49.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 045155 469 FFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELT 535 (582)
Q Consensus 469 v~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vi 535 (582)
.+++|...+|+|+|..|+.+|. ||.-|.++|.|..++..|.+. ++ ..-..|..++..++
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~--~~--~~r~~~~~~~~~~~ 690 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK--PG--FDRATVERDVTRVL 690 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec--Cc--ccHHHHHHHHHHHH
Confidence 5889999999999999999999 999999999999999998887 22 44556677766664
No 129
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=45.30 E-value=84 Score=24.38 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.3
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEE
Q 045155 477 HKPGGFVRLMEALNSLGLEVTNANV 501 (582)
Q Consensus 477 kr~glL~~Im~aLeeLgLdVvsAnv 501 (582)
.++|...+|+++|++.++.|.....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec
Confidence 4689999999999999999999853
No 130
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=43.67 E-value=1.1e+02 Score=32.49 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=51.5
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC-CEEEEEEEEEeCCCcccCHHHHHHHHHHHHhC
Q 045155 473 VFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT-GLVSNVFNVKKRDNEMVQADHVRDSLLELTRN 537 (582)
Q Consensus 473 I~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~-g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~ 537 (582)
+.-+++||.|.++|..|...|++.+...+=... +..-|.|.+.+.+. ..-..|+++|.++-..
T Consensus 199 f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~--~~~~~v~~AL~el~~~ 262 (279)
T COG0077 199 FSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGH--IDDPLVKEALEELKEI 262 (279)
T ss_pred EEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecC--cCcHhHHHHHHHHHhh
Confidence 334489999999999999999999999988766 56778899998776 4457889999887653
No 131
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=43.60 E-value=69 Score=29.89 Aligned_cols=38 Identities=24% Similarity=0.483 Sum_probs=34.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCE
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGL 507 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~ 507 (582)
.|.|+-+++||.|..+..+|.+.|+.+.-.++.-.+++
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dF 42 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDF 42 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCc
Confidence 57788899999999999999999999999888877765
No 132
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.86 E-value=1.3e+02 Score=25.42 Aligned_cols=32 Identities=13% Similarity=0.294 Sum_probs=25.7
Q ss_pred EEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEE
Q 045155 470 FIKVFC---EHKPGGFVRLMEALNSLGLEVTNANV 501 (582)
Q Consensus 470 ~IkI~C---~kr~glL~~Im~aLeeLgLdVvsAnv 501 (582)
+|.|.. +..+|.+.+|+++|++.|+.|-....
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 444444 34799999999999999999998864
No 133
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.88 E-value=39 Score=28.93 Aligned_cols=66 Identities=17% Similarity=0.277 Sum_probs=45.8
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEee--cCCEEEEEEEEEeCCCcc-cCHHHHHHHHHHHHhCCchhh
Q 045155 477 HKPGGFVRLMEALNSLGLEVTNANVTS--RTGLVSNVFNVKKRDNEM-VQADHVRDSLLELTRNPAREW 542 (582)
Q Consensus 477 kr~glL~~Im~aLeeLgLdVvsAnvSt--~~g~vl~tf~vKv~d~~~-vsae~Ik~aL~~vir~~~~~~ 542 (582)
-||-+|.++-.||..|+.-|-+|.|.. .+++--.+...-..++.. ++....++.+.+-++....+|
T Consensus 9 GRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~lmgw 77 (77)
T cd04898 9 GRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTLMGW 77 (77)
T ss_pred CCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHHhcC
Confidence 489999999999999999999999984 455666666666555543 444444666655555444333
No 134
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=41.62 E-value=77 Score=37.60 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=46.7
Q ss_pred eEEEEEecC--c--eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC-CEEEEEEEEEeCC
Q 045155 458 QVEVAQLNG--N--EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT-GLVSNVFNVKKRD 518 (582)
Q Consensus 458 qVeV~~i~g--~--ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~-g~vl~tf~vKv~d 518 (582)
-|.|.+-.. . .+.|.|.-.+|+|+|.+|+++|.+.+..|+++++.+.+ +.....|.+++.+
T Consensus 613 ~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n 678 (701)
T COG0317 613 VIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKN 678 (701)
T ss_pred EEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECc
Confidence 366665433 2 35677888999999999999999999999999999864 4444457777755
No 135
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=41.47 E-value=1.7e+02 Score=25.45 Aligned_cols=64 Identities=16% Similarity=0.289 Sum_probs=46.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec--CCEEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 469 FFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR--TGLVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 469 v~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~--~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
..+.|.-..+|+.|.+||...+--|+.|...+.|+. .+..- |..-|... -+.+-+...|.++..
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~n--ie~tV~s~--R~~~lL~~QLeKl~D 69 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNAN--IELTVDSD--RSVDLLTSQLEKLYD 69 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccce--EEEEEcCC--CChHHHHHHHHHHcc
Confidence 345566678999999999999999999999999987 44443 33333333 566667777776653
No 136
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.61 E-value=1.7e+02 Score=22.49 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=23.5
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEeecC
Q 045155 477 HKPGGFVRLMEALNSLGLEVTNANVTSRT 505 (582)
Q Consensus 477 kr~glL~~Im~aLeeLgLdVvsAnvSt~~ 505 (582)
+.++.+.+++++|.+.++.|.-.+.+..+
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~~s~ 41 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQGSSE 41 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 46899999999999999999776654433
No 137
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=40.30 E-value=1.4e+02 Score=24.49 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=22.2
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEE
Q 045155 476 EHKPGGFVRLMEALNSLGLEVTNAN 500 (582)
Q Consensus 476 ~kr~glL~~Im~aLeeLgLdVvsAn 500 (582)
...+|.+.+|+++|.+.++.|....
T Consensus 12 ~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 12 LGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEE
Confidence 3469999999999999999998775
No 138
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=39.27 E-value=1.8e+02 Score=29.90 Aligned_cols=38 Identities=11% Similarity=0.235 Sum_probs=31.5
Q ss_pred ceEEEEEEcCCCCC--hHHHHHHHHHhCCCeEEEEEEeec
Q 045155 467 NEFFIKVFCEHKPG--GFVRLMEALNSLGLEVTNANVTSR 504 (582)
Q Consensus 467 ~ev~IkI~C~kr~g--lL~~Im~aLeeLgLdVvsAnvSt~ 504 (582)
..+.++|.|.+... +...+++.|++.++.+.+.++...
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~ 180 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPA 180 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeec
Confidence 35678899988654 588999999999999999999655
No 139
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=39.12 E-value=1.3e+02 Score=23.67 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.1
Q ss_pred CCCChHHHHHHHHHhCCCeEEE
Q 045155 477 HKPGGFVRLMEALNSLGLEVTN 498 (582)
Q Consensus 477 kr~glL~~Im~aLeeLgLdVvs 498 (582)
..+|++.+++.+|.+.++.|..
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~~ 34 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEILQ 34 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEEE
Confidence 4799999999999999999963
No 140
>PRK11898 prephenate dehydratase; Provisional
Probab=37.46 E-value=1.6e+02 Score=30.93 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=47.2
Q ss_pred EEEEcCC-CCChHHHHHHHHHhCCCeEEEEEEeecCC-EEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 471 IKVFCEH-KPGGFVRLMEALNSLGLEVTNANVTSRTG-LVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 471 IkI~C~k-r~glL~~Im~aLeeLgLdVvsAnvSt~~g-~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
|-+..++ ++|.|.++|..|...|+.+++..+-...+ ..-|.|-+.+... .....++++|.++-+
T Consensus 199 lif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~--~~~~~~~~al~~L~~ 264 (283)
T PRK11898 199 LVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH--IDDVLVAEALKELEA 264 (283)
T ss_pred EEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc--CCCHHHHHHHHHHHH
Confidence 3344444 59999999999999999999999887654 3557777877653 454567777766654
No 141
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=37.30 E-value=47 Score=29.48 Aligned_cols=101 Identities=23% Similarity=0.285 Sum_probs=64.0
Q ss_pred HHHHHHHHhccCCCCCcEEEEeeecCCCceEEEcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchhhhHhhc
Q 045155 5 QTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQ 84 (582)
Q Consensus 5 ~~Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s~~~~~~d~~~~~~~t~~~~~l~~ 84 (582)
+.|+..|+.++.--+.+++.++.+..+...+...-++-..... ..
T Consensus 4 ~~l~~~~~~l~~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~------------------~~----------------- 48 (154)
T PF01590_consen 4 ELLQRILRELAELLGADRASIFLLDPDGNRLYSVAGVGLPDPP------------------PG----------------- 48 (154)
T ss_dssp HHHHHHHHHHHHHHTESEEEEEEEETTTTEEEEEEEEEGGGSE------------------HH-----------------
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEecCCCeEEEEEeecccccc------------------cc-----------------
Confidence 4578888888888888999998777774433332222211100 00
Q ss_pred ccccccCCCcceeeeeccCCceeeeccCC--cch----H---------------HHhh-cCCeEEEEee-CC----cEEe
Q 045155 85 LPSSMPLDSGIYAQSLISNQPRWLNFSNS--ADL----E---------------VMEE-TLWTRVLIPI-MG----GLIE 137 (582)
Q Consensus 85 M~~s~~~g~G~~G~~~~sg~~~Wi~~~~~--~~~----~---------------~~~~-gIqTiv~iPv-~~----GVvE 137 (582)
...+..+.++.|+++.++.+.+| .+. ... . .+.+ |+++++++|+ .+ |||.
T Consensus 49 -~~~~~~~~~~~~~~~~~~~~~~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~g~~~G~l~ 125 (154)
T PF01590_consen 49 -GRRLSMDESICGQVLQSREPIVI--SDVAADPRFAPQIAAQSALRALSSAERPFLAEYGVRSYLCVPIISGGRLIGVLS 125 (154)
T ss_dssp -HEEEETTSSHHHHHHHHTSCEEE--SSSGGSTTSSCHHHHHHTTBTTTHHHHHHHHTTTESEEEEEEEEETTEEEEEEE
T ss_pred -cccccccccHHHHHHhCCCeEee--ccccccccccccccccccccccccccccccccccCceeeEeeeecccCcEEEEE
Confidence 01244567778999999999997 442 110 0 1223 9999999999 33 7888
Q ss_pred eccccc
Q 045155 138 LFATKE 143 (582)
Q Consensus 138 LGS~~~ 143 (582)
|..+..
T Consensus 126 l~~~~~ 131 (154)
T PF01590_consen 126 LYRTRP 131 (154)
T ss_dssp EEEESS
T ss_pred EEECCC
Confidence 888776
No 142
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=37.04 E-value=1e+02 Score=25.54 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=22.6
Q ss_pred HHHHHHHHhccCCCCCcEEEEeeecCC
Q 045155 5 QTLMDRLRPLVGLKGWDYCVLWKLSDD 31 (582)
Q Consensus 5 ~~Lq~~Lr~Lv~~~~W~YaVFWkl~~~ 31 (582)
+.+...++.++.-.+++++.+|.+..+
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~i~~~~~~ 30 (149)
T smart00065 4 ELLQTILEELRQLLGADRVLIYLVDED 30 (149)
T ss_pred HHHHHHHHHHHHHhCCceEEEEEEecC
Confidence 457777888888889999999999874
No 143
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=36.95 E-value=1.2e+02 Score=25.23 Aligned_cols=48 Identities=29% Similarity=0.456 Sum_probs=33.7
Q ss_pred ceEEEEEecCceEEEEEEcCCC------CChHHHHHHHHHhCCCeEEEEEEeecC
Q 045155 457 VQVEVAQLNGNEFFIKVFCEHK------PGGFVRLMEALNSLGLEVTNANVTSRT 505 (582)
Q Consensus 457 ~qVeV~~i~g~ev~IkI~C~kr------~glL~~Im~aLeeLgLdVvsAnvSt~~ 505 (582)
+.|++. +.++.+.|.|.++.. ..-+..|-++|...|+.+.+.++...+
T Consensus 27 v~v~l~-~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~~ 80 (85)
T PF02120_consen 27 VEVKLR-LQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQGS 80 (85)
T ss_dssp EEEEEE-EETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS-
T ss_pred EEEEEE-EeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEECC
Confidence 356666 446689999999764 234788999999999999998887543
No 144
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=36.87 E-value=1.5e+02 Score=32.70 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=49.2
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEeecCC-EEEEEEEEEeCCCcccCHHHHHHHHHHHHhC
Q 045155 476 EHKPGGFVRLMEALNSLGLEVTNANVTSRTG-LVSNVFNVKKRDNEMVQADHVRDSLLELTRN 537 (582)
Q Consensus 476 ~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g-~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~ 537 (582)
+++||.|.++|..|...|+..+...+-...+ ..-|.|.+.+.+. .....++++|.++-..
T Consensus 305 ~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~--~~d~~~~~aL~~l~~~ 365 (386)
T PRK10622 305 GQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN--LRSAEMQKALKELGEI 365 (386)
T ss_pred CCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC--CCCHHHHHHHHHHHHh
Confidence 6899999999999999999999999886554 5778899998764 5556788888877553
No 145
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.61 E-value=1.2e+02 Score=24.05 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=25.8
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEeecCCEE
Q 045155 477 HKPGGFVRLMEALNSLGLEVTNANVTSRTGLV 508 (582)
Q Consensus 477 kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~v 508 (582)
+.+|++.+++++|.+.++.|.-.+..+.+-.+
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~si 43 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVNI 43 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceE
Confidence 35789999999999999999877766665333
No 146
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=34.79 E-value=15 Score=42.88 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=51.3
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHhcCCC-----CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045155 328 PQSKNLVAERKRRKKLNDRLYALRALVPI-----ITKLDRATILVDAIEYVKQLQKQEKELKEELEENS 391 (582)
Q Consensus 328 ~~~~h~~~ER~RR~~in~~~~~LrsLvP~-----~~K~dKasiL~~aI~YIk~Lq~~v~~L~~~~~~l~ 391 (582)
.+..|+.++|+||-.+.++|..|-+|.|. -.+.++++||. +.|+.+++.-+.+.++...+.
T Consensus 787 v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~kr 852 (856)
T KOG3582|consen 787 VSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEGKR 852 (856)
T ss_pred eecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhhhc
Confidence 34679999999999999999999999994 34678999998 889999999998888766543
No 147
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=34.68 E-value=2.2e+02 Score=23.54 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=22.0
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEE
Q 045155 478 KPGGFVRLMEALNSLGLEVTNANV 501 (582)
Q Consensus 478 r~glL~~Im~aLeeLgLdVvsAnv 501 (582)
.+|.+.+|+++|.+.|+.|-....
T Consensus 14 ~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 14 SHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred ccCHHHHHHHHHHHcCCcEEEEEe
Confidence 699999999999999999998864
No 148
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=33.45 E-value=2.4e+02 Score=22.67 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=24.1
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEeecC
Q 045155 478 KPGGFVRLMEALNSLGLEVTNANVTSRT 505 (582)
Q Consensus 478 r~glL~~Im~aLeeLgLdVvsAnvSt~~ 505 (582)
++|++.+++++|.+.+++|.-.+.+..+
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~ 41 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRN 41 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCe
Confidence 6789999999999999999877766654
No 149
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=32.63 E-value=1.2e+02 Score=25.81 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=64.6
Q ss_pred HHHHHHHHhccCCCCCcEEEEeeecCCCceEEEcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchhhhHhhc
Q 045155 5 QTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQ 84 (582)
Q Consensus 5 ~~Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s~~~~~~d~~~~~~~t~~~~~l~~ 84 (582)
+-++..|+.++...+.+.+.+|.+..+...+...-++ .+... . .
T Consensus 4 ~l~~~i~~~l~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~------------~----------------~------- 47 (129)
T PF13492_consen 4 ELLERILELLRELLGADRAALFLLDEDGNRLRVVAGW-GGDPR------------L----------------S------- 47 (129)
T ss_dssp HHHHHHHHHHHHHST-SEEEEEEEETTCECEEEEEEE-SS-GC------------G----------------H-------
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEEe-CCCcc------------c----------------c-------
Confidence 4567778888888899999999998775444443333 11110 0 0
Q ss_pred ccccccCCCcceeeeeccCCceeeeccCCcchHHHhhcCCeEEEEee-----CCcEEeecccccccCChHHHHHHHHH
Q 045155 85 LPSSMPLDSGIYAQSLISNQPRWLNFSNSADLEVMEETLWTRVLIPI-----MGGLIELFATKEVSEDPHVIDFIIAQ 157 (582)
Q Consensus 85 M~~s~~~g~G~~G~~~~sg~~~Wi~~~~~~~~~~~~~gIqTiv~iPv-----~~GVvELGS~~~i~Ed~~~v~~vk~~ 157 (582)
..++.+.++.++++.++++ +.. .+.... -..+++.+++||+ .-|||.+++.+.-.-+..=++.++.+
T Consensus 48 --~~l~~~~~~~~~~~~~~~~-~~~-~~~~~~--~~~~~~s~~~vPl~~~~~~~Gvl~~~~~~~~~~~~~d~~~l~~~ 119 (129)
T PF13492_consen 48 --ESLPEDDPLIGRALETGEP-VSV-PDIDER--DFLGIRSLLVVPLRSRDRVIGVLCLDSREPEEFSDEDLQLLESL 119 (129)
T ss_dssp --HCEETTSHHHHHHHHHTS--EEE-STCCC---TTTTTCEEEEEEEEETTEEEEEEEEEECTTCG-SHHHHHHHHHH
T ss_pred --ccCCCCccHHHHHHhhCCe-EEe-cccccc--cCCCCCEEEEEEEeECCEEEEEEEEEECCCCCCCHHHHHHHHHH
Confidence 0244567777777777765 331 221111 0147899999998 35999998877554444444444433
No 150
>PRK08639 threonine dehydratase; Validated
Probab=32.20 E-value=1.8e+02 Score=32.16 Aligned_cols=67 Identities=10% Similarity=0.220 Sum_probs=43.2
Q ss_pred cCceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCC--EEEEEEEEEeCCCcccCHHHHHHHHHH
Q 045155 465 NGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTG--LVSNVFNVKKRDNEMVQADHVRDSLLE 533 (582)
Q Consensus 465 ~g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g--~vl~tf~vKv~d~~~vsae~Ik~aL~~ 533 (582)
+++.+.+++.-++|||.|.++++.+-..+-+|+..+.-...+ .-...+.+++++. -..++|.++|.+
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~--~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDA--EDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 478899999999999999999996666665888877653222 2222344555432 233445554443
No 151
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.90 E-value=2.2e+02 Score=21.39 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=22.0
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEE
Q 045155 477 HKPGGFVRLMEALNSLGLEVTNANV 501 (582)
Q Consensus 477 kr~glL~~Im~aLeeLgLdVvsAnv 501 (582)
+.++.+.+++++|.+.++.|.-.+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEc
Confidence 4689999999999999999988764
No 152
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=31.15 E-value=50 Score=23.62 Aligned_cols=16 Identities=44% Similarity=0.769 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 045155 337 RKRRKKLNDRLYALRA 352 (582)
Q Consensus 337 R~RR~~in~~~~~Lrs 352 (582)
|+||+.++.++..||.
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7889999999999985
No 153
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=29.60 E-value=2.7e+02 Score=21.55 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.8
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEe
Q 045155 476 EHKPGGFVRLMEALNSLGLEVTNANVT 502 (582)
Q Consensus 476 ~kr~glL~~Im~aLeeLgLdVvsAnvS 502 (582)
++.+|.+.+|+++|.+.|+.|.-...+
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 567999999999999999999755443
No 154
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.48 E-value=74 Score=26.85 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC
Q 045155 366 LVDAIEYVKQLQKQEKELKEELEENSD 392 (582)
Q Consensus 366 L~~aI~YIk~Lq~~v~~L~~~~~~l~~ 392 (582)
+..||+-|.-||-++++|++++..|..
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~ 39 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 678999999999999999999887654
No 155
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=29.10 E-value=2.3e+02 Score=31.25 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=40.3
Q ss_pred cCceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEee-cC-CEEEEEEEEEeCC
Q 045155 465 NGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTS-RT-GLVSNVFNVKKRD 518 (582)
Q Consensus 465 ~g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt-~~-g~vl~tf~vKv~d 518 (582)
.++.+.+++.-++|||-|.++++.+-..+-+|+..+.-. .+ +.....|.+++++
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~ 377 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND 377 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC
Confidence 378899999999999999999997777777999888763 22 2333445566654
No 156
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=28.99 E-value=2.4e+02 Score=27.45 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=39.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec---CCEEEEEEEEEeC
Q 045155 469 FFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR---TGLVSNVFNVKKR 517 (582)
Q Consensus 469 v~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~---~g~vl~tf~vKv~ 517 (582)
+.+-|.-+++||.|+++|+-|.+.|..|++.-.+.. ++++---+.+++.
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d 57 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGD 57 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEec
Confidence 445566678999999999999999999999998876 6666555656653
No 157
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=28.97 E-value=66 Score=27.42 Aligned_cols=64 Identities=16% Similarity=0.284 Sum_probs=47.6
Q ss_pred EEEEcCC-CCChHHHHHHHHHhCCCeEEEEEEeecCCEE---------EEEEEEEeCCCcccCHHHHHHHHHHHHhC
Q 045155 471 IKVFCEH-KPGGFVRLMEALNSLGLEVTNANVTSRTGLV---------SNVFNVKKRDNEMVQADHVRDSLLELTRN 537 (582)
Q Consensus 471 IkI~C~k-r~glL~~Im~aLeeLgLdVvsAnvSt~~g~v---------l~tf~vKv~d~~~vsae~Ik~aL~~vir~ 537 (582)
|.|.-.+ +.|.+.+|-..|-++|+.|.+.+- ..+++ .+++.+.++.. ..+.+.++.+|.++-.+
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~--l~~~~~~~~~~~~~~~~~e~~v~~~-~~~~~~lr~~L~~la~e 75 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR--LSGRVPLEEQDDSPKACVEFSVRGQ-PADLEALRAALLELASE 75 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH--hhccccccccCCCCcEEEEEEEeCC-CCCHHHHHHHHHHHhcc
Confidence 4455556 889999999999999999987664 33332 45677777754 37999999999876543
No 158
>PLN02317 arogenate dehydratase
Probab=28.14 E-value=2.6e+02 Score=30.94 Aligned_cols=59 Identities=14% Similarity=0.259 Sum_probs=44.4
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEeecCCE---------------EEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 476 EHKPGGFVRLMEALNSLGLEVTNANVTSRTGL---------------VSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 476 ~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~---------------vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
++++|.|.++|.+|...++.+++..+-...+. .-|.|.+.+... ..-..+.++|.++-+
T Consensus 291 ~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~--~~d~~~~~aL~~L~~ 364 (382)
T PLN02317 291 EEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEAS--MADPRAQNALAHLQE 364 (382)
T ss_pred CCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcC--cCCHHHHHHHHHHHH
Confidence 56899999999999999999999998775443 457777777543 334556777766654
No 159
>PRK12483 threonine dehydratase; Reviewed
Probab=28.09 E-value=3e+02 Score=31.60 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=38.7
Q ss_pred cCceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCC-EEEEEEEEEeCC
Q 045155 465 NGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTG-LVSNVFNVKKRD 518 (582)
Q Consensus 465 ~g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g-~vl~tf~vKv~d 518 (582)
.++.+.+.|.-++|||.|.++++.|-+. +|+..+....+. .....+.+++++
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~ 394 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHP 394 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCC
Confidence 4788999999999999999999999888 888777765332 233344555543
No 160
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.99 E-value=1.8e+02 Score=23.45 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 045155 337 RKRRKKLNDRLYALRALVPIITKLDRATILVDAIEYVKQLQKQEKELK 384 (582)
Q Consensus 337 R~RR~~in~~~~~LrsLvP~~~K~dKasiL~~aI~YIk~Lq~~v~~L~ 384 (582)
|.-|=.....+..+..++ ...=.++|.+||+.+-+.++.+.
T Consensus 17 R~~RHD~~NhLqvI~gll-------qlg~~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLL-------QLGKYEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHH
Confidence 666667888899999988 22236789999999999988873
No 161
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=27.90 E-value=2.3e+02 Score=22.89 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=24.0
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEeecC
Q 045155 477 HKPGGFVRLMEALNSLGLEVTNANVTSRT 505 (582)
Q Consensus 477 kr~glL~~Im~aLeeLgLdVvsAnvSt~~ 505 (582)
..++.+.+++++|.+.++.|.-.+.+..+
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~~~~~~ 41 (80)
T cd04921 13 GVPGIAARIFSALARAGINVILISQASSE 41 (80)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 46899999999999999999877665333
No 162
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=27.87 E-value=80 Score=25.44 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=26.3
Q ss_pred eEEEEEEcC----CCCChHHHHHHHHHhCCCeEEEEE
Q 045155 468 EFFIKVFCE----HKPGGFVRLMEALNSLGLEVTNAN 500 (582)
Q Consensus 468 ev~IkI~C~----kr~glL~~Im~aLeeLgLdVvsAn 500 (582)
-..|+|..+ ..+|++.+|+.+|.+.|+.|...+
T Consensus 6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 345666665 379999999999999999998888
No 163
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.22 E-value=85 Score=26.47 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045155 366 LVDAIEYVKQLQKQEKELKEELEENS 391 (582)
Q Consensus 366 L~~aI~YIk~Lq~~v~~L~~~~~~l~ 391 (582)
+..||+-|..||.++++|+.++..+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 67899999999999999999865544
No 164
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=25.25 E-value=3e+02 Score=20.67 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.1
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEE
Q 045155 477 HKPGGFVRLMEALNSLGLEVTNANV 501 (582)
Q Consensus 477 kr~glL~~Im~aLeeLgLdVvsAnv 501 (582)
..++.+.+++.+|.+.++.|.-.+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4689999999999999999987764
No 165
>PRK09224 threonine dehydratase; Reviewed
Probab=24.78 E-value=3.9e+02 Score=30.38 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=36.9
Q ss_pred cCceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC-CEEEEEEEEEeCC
Q 045155 465 NGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT-GLVSNVFNVKKRD 518 (582)
Q Consensus 465 ~g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~-g~vl~tf~vKv~d 518 (582)
+++++++.|.-+.|||-|.++++.|. +.+|+..+....+ +.....+.+++++
T Consensus 325 ~~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~ 377 (504)
T PRK09224 325 EQREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSR 377 (504)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCC
Confidence 36789999999999999999999998 5777766665433 2222234455543
No 166
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=24.66 E-value=3.3e+02 Score=30.99 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=44.6
Q ss_pred cCceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCC-EEEEEEEEEeCCCcccCHHHHHHHHHHHHhCCch
Q 045155 465 NGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTG-LVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAR 540 (582)
Q Consensus 465 ~g~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g-~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~~~ 540 (582)
+++++++.|.=+.|||.|.+++++|-. .+|+..+....+. .....+.+++++ .+++.+-+..+....|.
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~~-----~~~~~~l~~~L~~~Gy~ 391 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLSN-----PQERQEILARLNDGGYS 391 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeCC-----HHHHHHHHHHHHHcCCC
Confidence 378999999999999999999999987 4777666654332 222234455542 34444444444444554
No 167
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=24.63 E-value=1.9e+02 Score=28.25 Aligned_cols=64 Identities=17% Similarity=0.304 Sum_probs=47.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC--CEEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT--GLVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~--g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
.+.+.-.+.+|.|.++...+...|+.+-+..+...+ +...-+|.+.. ..-..++|...|.+++.
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g---~~~~~EQi~kQL~kLid 71 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG---DEQVLEQIIKQLNKLID 71 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC---CcchHHHHHHHHHhhcc
Confidence 344555689999999999999999999888887655 44444555554 23567888888888875
No 168
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=23.70 E-value=3.1e+02 Score=31.13 Aligned_cols=62 Identities=6% Similarity=-0.019 Sum_probs=44.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCE-EE-EEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 471 IKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGL-VS-NVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 471 IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~-vl-~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
|-+...+++|.|.++|..++..|+.+++..+-..... .- +.|-+.+... ...++++|.++-+
T Consensus 34 LIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~----~~~l~~aL~~Lk~ 97 (464)
T TIGR01270 34 IIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELF----HYGLQEAMDLLKS 97 (464)
T ss_pred EEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcC----HHHHHHHHHHHHH
Confidence 3334467899999999999999999999998876543 33 6677776533 2456666655543
No 169
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.28 E-value=3.6e+02 Score=22.31 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=23.0
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEE
Q 045155 476 EHKPGGFVRLMEALNSLGLEVTNANV 501 (582)
Q Consensus 476 ~kr~glL~~Im~aLeeLgLdVvsAnv 501 (582)
+..+|.+.+|+++|.+.++.|-....
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 45799999999999999999999864
No 170
>PF13224 DUF4032: Domain of unknown function (DUF4032)
Probab=21.89 E-value=1.9e+02 Score=28.25 Aligned_cols=51 Identities=29% Similarity=0.324 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 045155 480 GGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELT 535 (582)
Q Consensus 480 glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vi 535 (582)
-...+=++-|.+||++|--..+++..+--...|..+| ++++.=..+|++++
T Consensus 19 ~ri~~ri~rLN~LGFdV~El~~~~~~~g~~~~i~p~V-----vd~ghh~rrL~rLT 69 (165)
T PF13224_consen 19 WRIEERIRRLNELGFDVGELEITTDDDGTRLRIQPKV-----VDAGHHRRRLLRLT 69 (165)
T ss_pred HHHHHHHHHHHhcCCceeeeEeEEcCCCCEEEEEeeE-----eCCcHHHHHHHHHh
Confidence 3456678899999999999999998876666777776 44555555555554
No 171
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.27 E-value=5.1e+02 Score=21.93 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=30.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCC
Q 045155 469 FFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTG 506 (582)
Q Consensus 469 v~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g 506 (582)
+++.|.=+.|||-|.+.++.|-. +-+|+.-+....++
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~~~ 38 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQGS 38 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecCCC
Confidence 57788889999999999999932 78888888876554
No 172
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=21.11 E-value=3.9e+02 Score=30.16 Aligned_cols=61 Identities=8% Similarity=0.140 Sum_probs=44.4
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCC-EEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 473 VFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTG-LVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 473 I~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g-~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
+..++++|.|.+||..+...|+.+++..+-.... ..-+.|-+.+.+.. . +.+.++|.++-+
T Consensus 21 FsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~--~-~~v~~aL~~Lk~ 82 (436)
T TIGR01268 21 FSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEAS--D-RKLEGVIEHLRQ 82 (436)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCc--c-HHHHHHHHHHHH
Confidence 3346789999999999999999999999876543 34567778876542 2 556666655544
No 173
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=20.22 E-value=4.6e+02 Score=32.65 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=51.7
Q ss_pred EEEEEec--CceEEEEE---EcCCCCChHHHHHHHHHhCCCeEEEEEEeec-CCEEEEEEEEEeCCCcccCHHHHHHHHH
Q 045155 459 VEVAQLN--GNEFFIKV---FCEHKPGGFVRLMEALNSLGLEVTNANVTSR-TGLVSNVFNVKKRDNEMVQADHVRDSLL 532 (582)
Q Consensus 459 VeV~~i~--g~ev~IkI---~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~-~g~vl~tf~vKv~d~~~vsae~Ik~aL~ 532 (582)
++|..++ +.++.+-| .-+...+.|+.|++.+.-+||.+.++=+-++ +|..+++|-++...+.......|.+.+.
T Consensus 219 i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~~~~~~~~~~~~~ 298 (1002)
T PTZ00324 219 LHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTADDNPDLSIEDRAS 298 (1002)
T ss_pred EEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCCCcccccHHHHHH
Confidence 4444444 24444444 4455688999999999999999999999887 6778888888876553322344555554
Q ss_pred H
Q 045155 533 E 533 (582)
Q Consensus 533 ~ 533 (582)
+
T Consensus 299 ~ 299 (1002)
T PTZ00324 299 L 299 (1002)
T ss_pred h
Confidence 4
Done!