Query 045155
Match_columns 582
No_of_seqs 321 out of 1292
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 18:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.5 5.6E-15 1.9E-19 124.9 5.5 65 328-392 6-71 (82)
2 1nkp_B MAX protein, MYC proto- 99.4 1.4E-13 4.9E-18 116.3 5.8 65 328-392 2-68 (83)
3 4ati_A MITF, microphthalmia-as 99.4 2.2E-13 7.5E-18 122.6 7.2 64 326-389 25-92 (118)
4 1hlo_A Protein (transcription 99.4 1.5E-13 5.1E-18 115.5 5.6 65 327-391 11-77 (80)
5 1an4_A Protein (upstream stimu 99.4 1.6E-13 5.6E-18 110.7 3.4 54 327-380 4-63 (65)
6 1nkp_A C-MYC, MYC proto-oncoge 99.4 4.4E-13 1.5E-17 114.7 5.8 64 328-391 6-72 (88)
7 1a0a_A BHLH, protein (phosphat 99.4 9.3E-14 3.2E-18 111.8 1.3 54 328-381 2-62 (63)
8 4h10_B Circadian locomoter out 99.4 5.8E-13 2E-17 109.4 5.4 57 328-384 8-65 (71)
9 1nlw_A MAD protein, MAX dimeri 99.3 1.9E-12 6.4E-17 108.9 6.9 64 329-392 2-68 (80)
10 4h10_A ARYL hydrocarbon recept 99.2 1.3E-12 4.5E-17 108.0 1.9 52 327-378 8-63 (73)
11 3u5v_A Protein MAX, transcript 99.2 4.3E-12 1.5E-16 105.7 4.1 58 327-384 4-65 (76)
12 2ql2_B Neurod1, neurogenic dif 98.9 1.1E-09 3.8E-14 87.2 4.8 53 329-381 3-58 (60)
13 1mdy_A Protein (MYOD BHLH doma 98.9 1.3E-09 4.3E-14 88.9 4.3 54 327-380 11-66 (68)
14 4f3l_A Mclock, circadian locom 98.7 1.5E-08 5.1E-13 106.2 5.7 53 327-379 11-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 2.2E-08 7.5E-13 106.1 3.6 53 327-379 12-68 (387)
16 2lfh_A DNA-binding protein inh 98.3 8E-08 2.7E-12 77.8 0.8 45 334-378 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.2 1.9E-06 6.4E-11 72.5 6.1 50 340-389 4-57 (83)
18 4aya_A DNA-binding protein inh 97.7 5.8E-05 2E-09 65.3 6.2 48 335-382 32-82 (97)
19 1zpv_A ACT domain protein; str 97.2 0.0033 1.1E-07 52.2 11.4 69 467-537 4-72 (91)
20 1u8s_A Glycine cleavage system 96.3 0.014 4.8E-07 55.4 9.1 66 468-536 6-71 (192)
21 1u8s_A Glycine cleavage system 96.0 0.014 4.7E-07 55.4 7.9 68 468-537 93-168 (192)
22 2nyi_A Unknown protein; protei 95.8 0.018 6.2E-07 55.1 7.8 68 467-537 92-165 (195)
23 2nyi_A Unknown protein; protei 95.8 0.034 1.1E-06 53.2 9.6 50 468-517 5-54 (195)
24 2ko1_A CTR148A, GTP pyrophosph 95.6 0.024 8.2E-07 46.2 6.4 50 468-517 5-54 (88)
25 1vhm_A Protein YEBR; structura 93.8 0.073 2.5E-06 51.1 5.7 71 89-161 89-170 (195)
26 1f5m_A GAF; CGMP binding, sign 92.6 0.047 1.6E-06 51.4 2.3 69 88-158 93-173 (180)
27 3trc_A Phosphoenolpyruvate-pro 92.5 0.17 5.7E-06 44.4 5.7 117 5-159 25-156 (171)
28 3p96_A Phosphoserine phosphata 92.3 0.25 8.7E-06 51.8 7.8 76 467-543 11-86 (415)
29 3o1l_A Formyltetrahydrofolate 92.2 0.56 1.9E-05 48.2 10.0 69 467-536 21-91 (302)
30 3obi_A Formyltetrahydrofolate 91.7 0.79 2.7E-05 46.7 10.3 76 467-543 5-82 (288)
31 3n0v_A Formyltetrahydrofolate 91.6 0.76 2.6E-05 46.8 10.0 74 468-543 8-83 (286)
32 3k2n_A Sigma-54-dependent tran 91.0 2.8 9.5E-05 36.9 12.2 120 5-159 23-161 (177)
33 3dba_A CONE CGMP-specific 3',5 90.9 0.044 1.5E-06 50.6 0.0 72 88-161 82-170 (180)
34 3ci6_A Phosphoenolpyruvate-pro 90.6 0.25 8.7E-06 42.6 4.8 117 5-159 27-158 (171)
35 3e0y_A Conserved domain protei 90.6 0.17 5.7E-06 44.8 3.6 115 5-159 32-161 (181)
36 3lou_A Formyltetrahydrofolate 90.2 1.3 4.5E-05 45.1 10.3 69 467-536 9-81 (292)
37 3mmh_A FRMSR, methionine-R-sul 90.2 0.26 8.9E-06 46.0 4.7 68 89-158 78-156 (167)
38 2jhe_A Transcription regulator 90.1 0.67 2.3E-05 41.9 7.3 35 470-504 2-36 (190)
39 3oov_A Methyl-accepting chemot 89.7 0.51 1.8E-05 41.1 6.0 117 5-159 19-157 (169)
40 2f1f_A Acetolactate synthase i 87.4 0.7 2.4E-05 43.3 5.5 64 469-535 4-69 (164)
41 3nrb_A Formyltetrahydrofolate 86.3 2.6 8.9E-05 42.8 9.5 74 467-543 6-81 (287)
42 2qyb_A Membrane protein, putat 85.3 3 0.0001 37.0 8.5 68 91-160 70-154 (181)
43 3rfb_A Putative uncharacterize 84.9 0.27 9.1E-06 46.5 1.2 70 88-159 77-157 (171)
44 2vjw_A GAF-B, GAF family prote 84.8 0.43 1.5E-05 42.9 2.5 63 88-157 55-127 (149)
45 1y7p_A Hypothetical protein AF 84.7 1.5 5E-05 43.2 6.3 61 468-533 4-69 (223)
46 2pc6_A Probable acetolactate s 84.6 1.2 4E-05 41.9 5.5 64 469-535 5-70 (165)
47 2zmf_A CAMP and CAMP-inhibited 84.5 0.28 9.5E-06 43.7 1.1 124 6-160 32-172 (189)
48 2w3g_A DOSS, two component sen 84.0 1 3.4E-05 38.4 4.4 117 5-159 9-140 (153)
49 3hcy_A Putative two-component 83.7 2.3 8E-05 36.6 6.8 112 5-158 6-133 (151)
50 3ksh_A Putative uncharacterize 83.5 0.36 1.2E-05 45.0 1.5 69 88-158 76-155 (160)
51 2fgc_A Acetolactate synthase, 81.7 3.3 0.00011 39.8 7.5 64 469-535 30-95 (193)
52 1mc0_A 3',5'-cyclic nucleotide 81.2 0.92 3.1E-05 45.6 3.6 71 89-161 246-334 (368)
53 2e4s_A CAMP and CAMP-inhibited 80.4 0.3 1E-05 43.7 -0.3 121 5-159 31-171 (189)
54 1ykd_A Adenylate cyclase; GAF 76.3 2.7 9.4E-05 42.8 5.4 98 5-142 217-331 (398)
55 3ibj_A CGMP-dependent 3',5'-cy 76.0 1.8 6E-05 48.7 4.2 114 5-159 31-161 (691)
56 3p01_A Two-component response 75.8 4.3 0.00015 36.6 6.1 113 5-159 47-174 (184)
57 1mc0_A 3',5'-cyclic nucleotide 70.7 2 6.8E-05 43.1 2.7 115 5-159 30-161 (368)
58 2jsx_A Protein NAPD; TAT, proo 70.2 21 0.00072 30.2 8.6 57 478-544 15-72 (95)
59 2f06_A Conserved hypothetical 63.8 28 0.00094 30.7 8.5 42 471-512 75-116 (144)
60 3ibj_A CGMP-dependent 3',5'-cy 63.2 2.7 9.1E-05 47.2 2.0 72 88-161 245-334 (691)
61 1ykd_A Adenylate cyclase; GAF 52.9 6 0.00021 40.2 2.4 51 89-141 76-143 (398)
62 2dtj_A Aspartokinase; protein- 52.6 34 0.0012 31.6 7.4 62 466-536 93-157 (178)
63 3j1z_P YIIP, cation efflux fam 52.5 9.7 0.00033 38.5 3.9 60 481-540 216-278 (306)
64 2wt7_A Proto-oncogene protein 52.2 28 0.00095 27.2 5.7 43 336-391 1-43 (63)
65 3bjc_A CGMP-specific 3',5'-cyc 51.9 3.1 0.0001 48.3 0.0 72 88-161 225-316 (878)
66 2f06_A Conserved hypothetical 49.0 80 0.0027 27.6 9.0 35 470-504 8-42 (144)
67 2qmx_A Prephenate dehydratase; 48.4 57 0.002 32.9 8.8 61 476-538 208-269 (283)
68 3bjc_A CGMP-specific 3',5'-cyc 46.8 4.1 0.00014 47.2 0.0 72 88-161 407-505 (878)
69 3luy_A Probable chorismate mut 45.9 1E+02 0.0036 31.7 10.4 60 477-538 217-277 (329)
70 3mwb_A Prephenate dehydratase; 45.4 57 0.002 33.4 8.3 65 471-537 204-270 (313)
71 2qmw_A PDT, prephenate dehydra 41.2 72 0.0025 31.9 8.1 59 476-537 197-256 (267)
72 3o5y_A Sensor protein; GAF dom 40.1 56 0.0019 29.5 6.6 70 89-160 55-139 (165)
73 2dt9_A Aspartokinase; protein- 37.3 1E+02 0.0034 27.9 7.9 50 466-515 14-67 (167)
74 3byp_A CZRB protein; membrane 36.5 1E+02 0.0034 24.9 7.1 60 481-540 11-75 (94)
75 2re1_A Aspartokinase, alpha an 35.7 77 0.0026 28.7 6.8 49 466-514 23-73 (167)
76 3fx7_A Putative uncharacterize 34.6 72 0.0025 27.2 5.8 41 340-388 47-87 (94)
77 3s1t_A Aspartokinase; ACT doma 33.9 1.1E+02 0.0037 28.4 7.7 62 466-536 94-158 (181)
78 2k2n_A Sensor protein, SYB-CPH 33.8 1.5E+02 0.0052 25.8 8.5 66 92-159 77-162 (172)
79 3nk4_C ZONA pellucida 3; ferti 31.8 16 0.00054 24.1 1.0 9 573-581 22-30 (30)
80 2er8_A Regulatory protein Leu3 30.6 35 0.0012 26.5 3.1 22 371-392 49-70 (72)
81 2dtj_A Aspartokinase; protein- 30.1 1.7E+02 0.0059 26.7 8.4 38 466-503 13-51 (178)
82 2re1_A Aspartokinase, alpha an 29.0 1.5E+02 0.0051 26.7 7.6 35 466-500 101-138 (167)
83 2zzt_A Putative uncharacterize 28.4 1.1E+02 0.0036 25.8 6.0 60 481-540 11-73 (107)
84 3s1t_A Aspartokinase; ACT doma 28.0 2.6E+02 0.009 25.7 9.2 50 466-515 14-67 (181)
85 2l5g_A GPS2 protein, G protein 26.0 72 0.0025 22.7 3.6 31 360-390 4-34 (38)
86 3ab4_A Aspartokinase; aspartat 25.1 2.8E+02 0.0097 28.9 9.9 64 466-534 262-329 (421)
87 3he4_B Synzip5; heterodimeric 24.3 82 0.0028 22.5 3.6 26 366-391 5-30 (46)
88 4go7_X Aspartokinase; transfer 24.2 43 0.0015 32.0 3.0 51 465-515 32-86 (200)
89 2jee_A YIIU; FTSZ, septum, coi 23.4 69 0.0024 26.6 3.6 26 366-391 15-40 (81)
90 1zme_C Proline utilization tra 23.4 45 0.0015 25.6 2.5 22 371-392 44-65 (70)
91 1rwu_A Hypothetical UPF0250 pr 22.2 3.4E+02 0.012 23.4 8.1 49 467-516 35-86 (109)
92 1dh3_A Transcription factor CR 20.3 67 0.0023 24.4 2.8 22 371-392 22-43 (55)
93 3oka_C N-terminal His-affinity 20.3 43 0.0015 20.4 1.3 11 566-576 7-17 (21)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.53 E-value=5.6e-15 Score=124.86 Aligned_cols=65 Identities=28% Similarity=0.460 Sum_probs=61.1
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 045155 328 PQSKNLVAERKRRKKLNDRLYALRALVPII-TKLDRATILVDAIEYVKQLQKQEKELKEELEENSD 392 (582)
Q Consensus 328 ~~~~h~~~ER~RR~~in~~~~~LrsLvP~~-~K~dKasiL~~aI~YIk~Lq~~v~~L~~~~~~l~~ 392 (582)
++..|+.+||+||++||++|..|++|||.. .|+||++||.+||+||++|+.+++.|+.+++.|..
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999987 89999999999999999999999999999888764
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.41 E-value=1.4e-13 Score=116.31 Aligned_cols=65 Identities=28% Similarity=0.472 Sum_probs=59.5
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHhcCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 045155 328 PQSKNLVAERKRRKKLNDRLYALRALVPI--ITKLDRATILVDAIEYVKQLQKQEKELKEELEENSD 392 (582)
Q Consensus 328 ~~~~h~~~ER~RR~~in~~~~~LrsLvP~--~~K~dKasiL~~aI~YIk~Lq~~v~~L~~~~~~l~~ 392 (582)
++..|+..||+||.+||+.|..|+++||. ..|++|++||..||+||+.|+++++.|+.+++.|..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999997 489999999999999999999999999988877654
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.41 E-value=2.2e-13 Score=122.60 Aligned_cols=64 Identities=27% Similarity=0.559 Sum_probs=53.2
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045155 326 KEPQSKNLVAERKRRKKLNDRLYALRALVPII----TKLDRATILVDAIEYVKQLQKQEKELKEELEE 389 (582)
Q Consensus 326 ~~~~~~h~~~ER~RR~~in~~~~~LrsLvP~~----~K~dKasiL~~aI~YIk~Lq~~v~~L~~~~~~ 389 (582)
+.++..|+.+||+||++||++|..|++|||.+ .|++|++||.+||+||++||++++.|+.+...
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~ 92 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 92 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999975 37889999999999999999999999876444
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=1.5e-13 Score=115.50 Aligned_cols=65 Identities=28% Similarity=0.524 Sum_probs=60.4
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045155 327 EPQSKNLVAERKRRKKLNDRLYALRALVPII--TKLDRATILVDAIEYVKQLQKQEKELKEELEENS 391 (582)
Q Consensus 327 ~~~~~h~~~ER~RR~~in~~~~~LrsLvP~~--~K~dKasiL~~aI~YIk~Lq~~v~~L~~~~~~l~ 391 (582)
..+..|+..||+||.+||+.|..|+++||.. .|++|++||..||+||+.|++++++|+.+++.|.
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999974 6999999999999999999999999999998875
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.37 E-value=1.6e-13 Score=110.75 Aligned_cols=54 Identities=24% Similarity=0.490 Sum_probs=49.7
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcCCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 045155 327 EPQSKNLVAERKRRKKLNDRLYALRALVPIIT------KLDRATILVDAIEYVKQLQKQE 380 (582)
Q Consensus 327 ~~~~~h~~~ER~RR~~in~~~~~LrsLvP~~~------K~dKasiL~~aI~YIk~Lq~~v 380 (582)
.++..|+.+||+||++||+.|..|++|||.+. |++|++||.+||+||++||++.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999754 7899999999999999999864
No 6
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.37 E-value=4.4e-13 Score=114.71 Aligned_cols=64 Identities=30% Similarity=0.455 Sum_probs=57.4
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045155 328 PQSKNLVAERKRRKKLNDRLYALRALVPII---TKLDRATILVDAIEYVKQLQKQEKELKEELEENS 391 (582)
Q Consensus 328 ~~~~h~~~ER~RR~~in~~~~~LrsLvP~~---~K~dKasiL~~aI~YIk~Lq~~v~~L~~~~~~l~ 391 (582)
.+..|+..||+||.+||+.|..||++||.. .|.+|++||.+||+||++|+.+.+.+..+++.+.
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999974 6999999999999999999999988877666554
No 7
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.36 E-value=9.3e-14 Score=111.77 Aligned_cols=54 Identities=28% Similarity=0.407 Sum_probs=48.7
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHhcCCCC-------CCCChhhHHHHHHHHHHHHHHHHH
Q 045155 328 PQSKNLVAERKRRKKLNDRLYALRALVPII-------TKLDRATILVDAIEYVKQLQKQEK 381 (582)
Q Consensus 328 ~~~~h~~~ER~RR~~in~~~~~LrsLvP~~-------~K~dKasiL~~aI~YIk~Lq~~v~ 381 (582)
++.+|+.+||+||++||..|..|++|||.+ .|.+||+||+.||+||++||++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999953 577899999999999999998753
No 8
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.35 E-value=5.8e-13 Score=109.37 Aligned_cols=57 Identities=23% Similarity=0.405 Sum_probs=51.9
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 045155 328 PQSKNLVAERKRRKKLNDRLYALRALVPII-TKLDRATILVDAIEYVKQLQKQEKELK 384 (582)
Q Consensus 328 ~~~~h~~~ER~RR~~in~~~~~LrsLvP~~-~K~dKasiL~~aI~YIk~Lq~~v~~L~ 384 (582)
++.+|+.+||+||++||++|..|++|||.. .|+||++||..||+||+.||+++.=|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 457899999999999999999999999964 699999999999999999999886553
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.32 E-value=1.9e-12 Score=108.93 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=58.4
Q ss_pred CccccHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 045155 329 QSKNLVAERKRRKKLNDRLYALRALVPII---TKLDRATILVDAIEYVKQLQKQEKELKEELEENSD 392 (582)
Q Consensus 329 ~~~h~~~ER~RR~~in~~~~~LrsLvP~~---~K~dKasiL~~aI~YIk~Lq~~v~~L~~~~~~l~~ 392 (582)
+..|+..||+||..||+.|..|+++||.. .|.+|++||.+|++||+.|+.+.+.|+.+++.|..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999964 68899999999999999999999999998877653
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.25 E-value=1.3e-12 Score=107.96 Aligned_cols=52 Identities=33% Similarity=0.482 Sum_probs=47.7
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHH
Q 045155 327 EPQSKNLVAERKRRKKLNDRLYALRALVPII----TKLDRATILVDAIEYVKQLQK 378 (582)
Q Consensus 327 ~~~~~h~~~ER~RR~~in~~~~~LrsLvP~~----~K~dKasiL~~aI~YIk~Lq~ 378 (582)
.++.+|+.+||+||++||+.|..|++|||.+ .|+|||+||..||+||+.|+.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 3457899999999999999999999999964 799999999999999999974
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.23 E-value=4.3e-12 Score=105.70 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=48.5
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHH
Q 045155 327 EPQSKNLVAERKRRKKLNDRLYALRALVPI---ITKL-DRATILVDAIEYVKQLQKQEKELK 384 (582)
Q Consensus 327 ~~~~~h~~~ER~RR~~in~~~~~LrsLvP~---~~K~-dKasiL~~aI~YIk~Lq~~v~~L~ 384 (582)
+++..|+..||+||..||+.|..||.+||. ..|. +|++||..||+||+.||+++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999994 4565 699999999999999999998754
No 12
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.89 E-value=1.1e-09 Score=87.18 Aligned_cols=53 Identities=32% Similarity=0.359 Sum_probs=48.1
Q ss_pred CccccHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 045155 329 QSKNLVAERKRRKKLNDRLYALRALVPII---TKLDRATILVDAIEYVKQLQKQEK 381 (582)
Q Consensus 329 ~~~h~~~ER~RR~~in~~~~~LrsLvP~~---~K~dKasiL~~aI~YIk~Lq~~v~ 381 (582)
+..|+..||+|+..||+.|..||.+||.. .|.+|..+|..||+||+.|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999964 589999999999999999998764
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.87 E-value=1.3e-09 Score=88.94 Aligned_cols=54 Identities=26% Similarity=0.392 Sum_probs=49.1
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 045155 327 EPQSKNLVAERKRRKKLNDRLYALRALVPI--ITKLDRATILVDAIEYVKQLQKQE 380 (582)
Q Consensus 327 ~~~~~h~~~ER~RR~~in~~~~~LrsLvP~--~~K~dKasiL~~aI~YIk~Lq~~v 380 (582)
..+..|+..||+|+..||+.|..||.+||. ..|++|+.||..||+||..|++.+
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 446679999999999999999999999996 368999999999999999999765
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.66 E-value=1.5e-08 Score=106.16 Aligned_cols=53 Identities=23% Similarity=0.468 Sum_probs=42.7
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 045155 327 EPQSKNLVAERKRRKKLNDRLYALRALVP-IITKLDRATILVDAIEYVKQLQKQ 379 (582)
Q Consensus 327 ~~~~~h~~~ER~RR~~in~~~~~LrsLvP-~~~K~dKasiL~~aI~YIk~Lq~~ 379 (582)
.++..|+.+||+||++||..|..|++||| ...|+||++||..||.|||.|+..
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999999999999999 568999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.56 E-value=2.2e-08 Score=106.12 Aligned_cols=53 Identities=32% Similarity=0.487 Sum_probs=48.9
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 045155 327 EPQSKNLVAERKRRKKLNDRLYALRALVP----IITKLDRATILVDAIEYVKQLQKQ 379 (582)
Q Consensus 327 ~~~~~h~~~ER~RR~~in~~~~~LrsLvP----~~~K~dKasiL~~aI~YIk~Lq~~ 379 (582)
.++.+|+.+||+||++||..|..|++||| ...|+||++||..||.|||.|+..
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 45678999999999999999999999999 578999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.34 E-value=8e-08 Score=77.81 Aligned_cols=45 Identities=31% Similarity=0.404 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHHHHHHHH
Q 045155 334 VAERKRRKKLNDRLYALRALVPII---TKLDRATILVDAIEYVKQLQK 378 (582)
Q Consensus 334 ~~ER~RR~~in~~~~~LrsLvP~~---~K~dKasiL~~aI~YIk~Lq~ 378 (582)
..||+|+..||+.|..||.+||.. .|++|..+|.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 468889999999999999999963 689999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.20 E-value=1.9e-06 Score=72.47 Aligned_cols=50 Identities=28% Similarity=0.572 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045155 340 RKKLNDRLYALRALVPII----TKLDRATILVDAIEYVKQLQKQEKELKEELEE 389 (582)
Q Consensus 340 R~~in~~~~~LrsLvP~~----~K~dKasiL~~aI~YIk~Lq~~v~~L~~~~~~ 389 (582)
|..||+++..|..|||.+ .|.+|++||..|++||++||++.+.+.++...
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r 57 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 57 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999964 57899999999999999999988887765443
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.68 E-value=5.8e-05 Score=65.26 Aligned_cols=48 Identities=27% Similarity=0.342 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC---CCCCChhhHHHHHHHHHHHHHHHHHH
Q 045155 335 AERKRRKKLNDRLYALRALVPI---ITKLDRATILVDAIEYVKQLQKQEKE 382 (582)
Q Consensus 335 ~ER~RR~~in~~~~~LrsLvP~---~~K~dKasiL~~aI~YIk~Lq~~v~~ 382 (582)
.||.|-..||+-|..||.+||. ..|++|..+|.-||+||+.|++-++.
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 4577778899999999999996 35899999999999999999988764
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.22 E-value=0.0033 Score=52.17 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=59.3
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHhC
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRN 537 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~ 537 (582)
..+.|.|.|+++||++.+|..+|.+.|..|.+++..+..+.+...+.+++.+. ...+.|.++|.++...
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~--~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEK--QDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSC--CCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCC--CCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999888888777888887663 5788999999877543
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.27 E-value=0.014 Score=55.36 Aligned_cols=66 Identities=11% Similarity=0.170 Sum_probs=55.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 468 EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 468 ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
.+.|.|.|++|||++.+|..+|.++|++|+.+++.+..+.+...+.+.... ...+.|++.|..+..
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~---~~~~~l~~~L~~~~~ 71 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP---SNITRVETTLPLLGQ 71 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH---HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC---CCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999998888877777776532 356778888887764
No 21
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.05 E-value=0.014 Score=55.39 Aligned_cols=68 Identities=6% Similarity=0.037 Sum_probs=54.4
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC--------CEEEEEEEEEeCCCcccCHHHHHHHHHHHHhC
Q 045155 468 EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT--------GLVSNVFNVKKRDNEMVQADHVRDSLLELTRN 537 (582)
Q Consensus 468 ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~--------g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~ 537 (582)
.+.|.|.|++++|++.+|.++|.++|++|..+...+.+ +.++-.+.+...+ ....+.++++|..+..+
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~--~~~~~~l~~~l~~~~~~ 168 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS--GCNLMQLQEEFDALCTA 168 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT--TSCHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC--CCCHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999988764 2444445555443 46888999999987764
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.85 E-value=0.018 Score=55.06 Aligned_cols=68 Identities=13% Similarity=0.055 Sum_probs=54.8
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC------CEEEEEEEEEeCCCcccCHHHHHHHHHHHHhC
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT------GLVSNVFNVKKRDNEMVQADHVRDSLLELTRN 537 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~------g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~ 537 (582)
..+.|.|.|++|||++.+|-..|-++|+.|..+...+.+ ++++-.+.+.+.+ ... +.|+++|..+..+
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~--~~~-~~l~~~l~~~a~~ 165 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF--PLY-QEVVTALSRVEEE 165 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG--GGH-HHHHHHHHHHHHH
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC--Ccc-HHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999876 4555555555543 345 8899999877654
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.83 E-value=0.034 Score=53.20 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=44.8
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeC
Q 045155 468 EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKR 517 (582)
Q Consensus 468 ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~ 517 (582)
.+.|.|.|++|+|++.+|..+|.++|+.|+.+++.+..+.+...+.+...
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 57899999999999999999999999999999999888877667777654
No 24
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.57 E-value=0.024 Score=46.19 Aligned_cols=50 Identities=10% Similarity=0.170 Sum_probs=41.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeC
Q 045155 468 EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKR 517 (582)
Q Consensus 468 ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~ 517 (582)
.+.|+|.+.++||+|.+|..+|.+.|+.|.++++...++.....|.+++.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~ 54 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK 54 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC
Confidence 46788889999999999999999999999999998876644455666654
No 25
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=93.76 E-value=0.073 Score=51.15 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=52.7
Q ss_pred ccCCCcceeeeeccCCceeeeccCC-cchHHHh--hcCCeEEEEee-CC----cEEeecccccc---cCChHHHHHHHHH
Q 045155 89 MPLDSGIYAQSLISNQPRWLNFSNS-ADLEVME--ETLWTRVLIPI-MG----GLIELFATKEV---SEDPHVIDFIIAQ 157 (582)
Q Consensus 89 ~~~g~G~~G~~~~sg~~~Wi~~~~~-~~~~~~~--~gIqTiv~iPv-~~----GVvELGS~~~i---~Ed~~~v~~vk~~ 157 (582)
|++|+|+.|+|+.+|+++.| .+. .++..++ .+.+..+|||+ .+ |||++.+.+.- .+|..+++.+-.+
T Consensus 89 i~~GeGi~G~aa~tg~~i~V--~Dv~~~p~~~~~~~~~~S~l~VPI~~~g~viGVL~i~s~~~~~F~e~d~~~L~~lA~~ 166 (195)
T 1vhm_A 89 IPVGRGVCGTAVARNQVQRI--EDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQ 166 (195)
T ss_dssp EETTSHHHHHHHHHTSCEEE--SCTTTCTTCCCSCCCCSEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred ecCCCChHHHHHhcCCEEEE--CCcccCcchhhcCCCccEEEEEeEeECCEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence 78899999999999999999 653 2333222 27899999999 33 99999997653 3566777777666
Q ss_pred cccc
Q 045155 158 CNIS 161 (582)
Q Consensus 158 f~~l 161 (582)
.+..
T Consensus 167 ia~a 170 (195)
T 1vhm_A 167 LEKV 170 (195)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 26
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=92.58 E-value=0.047 Score=51.42 Aligned_cols=69 Identities=9% Similarity=0.210 Sum_probs=50.4
Q ss_pred cccCCCcceeeeeccCCceeeeccCC-cchHHHh--hcCCeEEEEeeCC------cEEeecccccc---cCChHHHHHHH
Q 045155 88 SMPLDSGIYAQSLISNQPRWLNFSNS-ADLEVME--ETLWTRVLIPIMG------GLIELFATKEV---SEDPHVIDFII 155 (582)
Q Consensus 88 s~~~g~G~~G~~~~sg~~~Wi~~~~~-~~~~~~~--~gIqTiv~iPv~~------GVvELGS~~~i---~Ed~~~v~~vk 155 (582)
.+++|+|+.|+|+.+|+++.| .+. .++...+ .+++..+|||+.. |||++.+.+.- .+|..+++.+-
T Consensus 93 ~i~~g~Gi~G~aa~~g~~v~v--~Dv~~dp~~~~~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~~~F~~~d~~~L~~la 170 (180)
T 1f5m_A 93 MIQFGKGVCGTAASTKETQIV--PDVNKYPGHIACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKEFLEKLA 170 (180)
T ss_dssp EEETTSHHHHHHHHHTSCEEE--SCGGGSTTCCCSSTTCCEEEEEEEECTTSCEEEEEEEEESSTTCCCHHHHHHHHHHH
T ss_pred eecCCCcchhhhhhcCCEEEe--CCcccCccccccCcccceEEEEEEEcCCCeEEEEEEeccCCCCCcCHHHHHHHHHHH
Confidence 378899999999999999999 553 2232222 3889999999965 99999987643 34556666555
Q ss_pred HHc
Q 045155 156 AQC 158 (582)
Q Consensus 156 ~~f 158 (582)
.+.
T Consensus 171 ~~~ 173 (180)
T 1f5m_A 171 KLI 173 (180)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 27
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=92.45 E-value=0.17 Score=44.43 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=75.1
Q ss_pred HHHHHHHHhccCCCCCcEEEEeeecCCCceEEEcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchhhhHhhc
Q 045155 5 QTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQ 84 (582)
Q Consensus 5 ~~Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s~~~~~~d~~~~~~~t~~~~~l~~ 84 (582)
+.|+..++.++...++++|.+|.+.++...|.+.- +.|.... .+..
T Consensus 25 ~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~--~~g~~~~--------------------------------~~~~ 70 (171)
T 3trc_A 25 QALKLVVVRLCEALPADACSLFICDDVHGEYVLMA--TQGLNSK--------------------------------QVGK 70 (171)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEE--EESSCGG--------------------------------GTTT
T ss_pred HHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEE--ecCCCcc--------------------------------cccc
Confidence 44667777777788999999999988754444331 1111100 0000
Q ss_pred ccccccCCCcceeeeeccCCceeeeccCCc-chH------HHhhcCCeEEEEeeC-----CcEEeecccccc---cCChH
Q 045155 85 LPSSMPLDSGIYAQSLISNQPRWLNFSNSA-DLE------VMEETLWTRVLIPIM-----GGLIELFATKEV---SEDPH 149 (582)
Q Consensus 85 M~~s~~~g~G~~G~~~~sg~~~Wi~~~~~~-~~~------~~~~gIqTiv~iPv~-----~GVvELGS~~~i---~Ed~~ 149 (582)
..++.++|+.|+++.++++.++ .+.. ++. ....|++.+++||+. -|||.+++.+.- .+|..
T Consensus 71 --~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~~~~~~~~~f~~~d~~ 146 (171)
T 3trc_A 71 --LRLKFGEGLIGLVGEREEPINL--ADAPLHPAYKHRPELGEEDYHGFLGIPIIEQGELLGILVIQQLESHHFAEEEEA 146 (171)
T ss_dssp --CEEETTCHHHHHHHHHTSCEEE--SCGGGSTTCCCCGGGCCCCCCEEEEEEEEETTEEEEEEEEEESSSCCCCHHHHH
T ss_pred --EeecCCCChhhHHHhcCCeEEe--CCCCCCCcccccccCCcccccEEEEEeEEECCEEEEEEEEeecCCCCCCHHHHH
Confidence 1367789999999999999999 4421 111 112489999999982 489999987543 34555
Q ss_pred HHHHHHHHcc
Q 045155 150 VIDFIIAQCN 159 (582)
Q Consensus 150 ~v~~vk~~f~ 159 (582)
+++.+-.++.
T Consensus 147 ~l~~la~~~a 156 (171)
T 3trc_A 147 FCVTLAIHLA 156 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 28
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=92.32 E-value=0.25 Score=51.83 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=61.0
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHhCCchhhh
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAREWI 543 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~~~~~~ 543 (582)
..+.|.|.|++|+|+...|...|-++|..|+.++-+...+.++..+.+.+.+. ..+.+.|+++|..+..+--=.|.
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~ 86 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPAD-VADGPALRHDVEAAIRKVGLDVS 86 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHH-HHTSHHHHHHHHHHHHHTTCEEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCC-cCCHHHHHHHHHHHHHHcCeEEE
Confidence 45789999999999999999999999999999999999998877777776443 23568899999876543322454
No 29
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=92.23 E-value=0.56 Score=48.18 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=55.5
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec--CCEEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR--TGLVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~--~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
..+.|.|.|++|+|+...|-..|-++|+.|+.++.+.. .++++-.+.+...+. ..+.++++++|..+..
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-~~~~~~L~~~l~~la~ 91 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-PFDLDGFREAFTPIAE 91 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-SSCHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-CCCHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999998864 566655555554332 4688999999987654
No 30
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=91.66 E-value=0.79 Score=46.67 Aligned_cols=76 Identities=11% Similarity=0.201 Sum_probs=59.4
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEe--ecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHhCCchhhh
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVT--SRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAREWI 543 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvS--t~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~~~~~~ 543 (582)
..+.|.|.|++|+|+..+|-..|-++|+.|+.++.. ...+.++-.+.+.+.+. ..+.++++++|..+-.+-.-.|.
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~~~~~L~~~f~~la~~~~m~~~ 82 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VIPLASLRTGFGVIAAKFTMGWH 82 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CCCHHHHHHHHHHHHHHTTCEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CCCHHHHHHHHHHHHHHcCCEEE
Confidence 458899999999999999999999999999999985 34577666666666553 47889999999877553322443
No 31
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=91.58 E-value=0.76 Score=46.75 Aligned_cols=74 Identities=14% Similarity=0.093 Sum_probs=58.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEe--ecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHhCCchhhh
Q 045155 468 EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVT--SRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAREWI 543 (582)
Q Consensus 468 ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvS--t~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~~~~~~ 543 (582)
.+.|.|.|++|+|+..+|-..|-++|+.|+.++.+ ...+.++-.+.+...+ ..+.++++++|..+-.+-.-.|.
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~~L~~~f~~la~~l~m~~~ 83 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--DFDEAGFRAGLAERSEAFGMAFE 83 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--SCCHHHHHHHHHHHHGGGTCEEE
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--CCCHHHHHHHHHHHHHHcCCEEE
Confidence 57899999999999999999999999999999988 4456666555555544 47889999999876553322454
No 32
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=91.03 E-value=2.8 Score=36.88 Aligned_cols=120 Identities=10% Similarity=0.083 Sum_probs=76.6
Q ss_pred HHHHHHHHhccCCCCCcEEEEeeecCCC-ceEEEcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchhhhHhh
Q 045155 5 QTLMDRLRPLVGLKGWDYCVLWKLSDDQ-RFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLS 83 (582)
Q Consensus 5 ~~Lq~~Lr~Lv~~~~W~YaVFWkl~~~~-~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s~~~~~~d~~~~~~~t~~~~~l~ 83 (582)
+.|+..++.++.-.+.+++.+|-+.++. .+..|..+|...... ..
T Consensus 23 ~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~-----------------~~----------------- 68 (177)
T 3k2n_A 23 ELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPE-----------------QL----------------- 68 (177)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCS-----------------TT-----------------
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCc-----------------hh-----------------
Confidence 4577777888888899999999998875 444553333322110 00
Q ss_pred cccccccCCCcceeeeeccCCceeeeccCC----cch-----H-HHhhcCCeEEEEee-----CCcEEeeccccccc---
Q 045155 84 QLPSSMPLDSGIYAQSLISNQPRWLNFSNS----ADL-----E-VMEETLWTRVLIPI-----MGGLIELFATKEVS--- 145 (582)
Q Consensus 84 ~M~~s~~~g~G~~G~~~~sg~~~Wi~~~~~----~~~-----~-~~~~gIqTiv~iPv-----~~GVvELGS~~~i~--- 145 (582)
....++.+.|+.|+++.++++..+..... ... . ....|++.++|||+ .-|||.|++.+.-.
T Consensus 69 -~~~~~~~~~~~~~~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~iGvL~l~~~~~~~f~~ 147 (177)
T 3k2n_A 69 -RHQTRSIAGTWLEGHLDDRTVTVASIARDIPSFGADGAPLLWTLHELGMRQIVLSPLRSGGRVIGFLSFVSAEEKLWSD 147 (177)
T ss_dssp -CCSEEECTTSGGGGGTTCCSCEEEETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCH
T ss_pred -hcccCCccccHHHHHhccCCceEechhhcccccCCcchhHHHHHHHcCceEEEEEEEEECCEEEEEEEEEECCCCCCCH
Confidence 00136678899999999999998842221 111 1 22349999999998 23899998865433
Q ss_pred CChHHHHHHHHHcc
Q 045155 146 EDPHVIDFIIAQCN 159 (582)
Q Consensus 146 Ed~~~v~~vk~~f~ 159 (582)
+|..+++.+-.++.
T Consensus 148 ~d~~ll~~lA~~~a 161 (177)
T 3k2n_A 148 GDKSLLSGVSSSIA 161 (177)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555554
No 33
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=90.88 E-value=0.044 Score=50.61 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=52.7
Q ss_pred cccCCCcceeeeeccCCceeeeccCCc-chH---HH--hh--cCCeEEEEeeCC-----cEEeecccccc----cCChHH
Q 045155 88 SMPLDSGIYAQSLISNQPRWLNFSNSA-DLE---VM--EE--TLWTRVLIPIMG-----GLIELFATKEV----SEDPHV 150 (582)
Q Consensus 88 s~~~g~G~~G~~~~sg~~~Wi~~~~~~-~~~---~~--~~--gIqTiv~iPv~~-----GVvELGS~~~i----~Ed~~~ 150 (582)
.+++|+|+.|+|+.+|++++| .+.. ++. .+ .. .++.++|||+.. |||+|.+...- .+|..+
T Consensus 82 ~~~~~~gi~g~v~~tg~~v~i--~d~~~d~~f~~~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n~~~~~~Ft~~d~~l 159 (180)
T 3dba_A 82 VFPLDIGIAGWVAHTKKFFNI--PDVKKNNHFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEEV 159 (180)
T ss_dssp EECTTSSHHHHHHHHTCCEEE--SCGGGCTTCCCHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEESSSSSCCHHHHHH
T ss_pred eeeCCCCHHHHHHHhCCEEEe--cCCCCCcccChhhccccCccccEEEEEEeccCCEEEEEEEEEeCCCCCCCCHHHHHH
Confidence 478899999999999999999 5532 221 11 12 478999999932 99999876532 467888
Q ss_pred HHHHHHHcccc
Q 045155 151 IDFIIAQCNIS 161 (582)
Q Consensus 151 v~~vk~~f~~l 161 (582)
++.+-.++...
T Consensus 160 L~~lA~~aa~~ 170 (180)
T 3dba_A 160 FKKYLNFISLV 170 (180)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887777643
No 34
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=90.62 E-value=0.25 Score=42.64 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=71.8
Q ss_pred HHHHHHHHhccCCCCCcEEEEeeecCCCceEEEcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchhhhHhhc
Q 045155 5 QTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQ 84 (582)
Q Consensus 5 ~~Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s~~~~~~d~~~~~~~t~~~~~l~~ 84 (582)
+.++..|+.++.-.+++++.+|.+.++...|.+.-.+ |.... ...
T Consensus 27 ~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~--g~~~~--------------------------------~~~- 71 (171)
T 3ci6_A 27 DSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASK--GLNPE--------------------------------SVG- 71 (171)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEE--SSCGG--------------------------------GTT-
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEecc--CCCcc--------------------------------ccc-
Confidence 4466666777777789999999998775444432211 11000 000
Q ss_pred ccccccCCCcceeeeeccCCceeeeccCC-cch-----H-HHhhcCCeEEEEeeC-----CcEEeeccccccc---CChH
Q 045155 85 LPSSMPLDSGIYAQSLISNQPRWLNFSNS-ADL-----E-VMEETLWTRVLIPIM-----GGLIELFATKEVS---EDPH 149 (582)
Q Consensus 85 M~~s~~~g~G~~G~~~~sg~~~Wi~~~~~-~~~-----~-~~~~gIqTiv~iPv~-----~GVvELGS~~~i~---Ed~~ 149 (582)
...++.+.|+.|+++.++++.++ .+. .++ . ....|++++++||+. -|||.+++.+.-. +|..
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~~~ 148 (171)
T 3ci6_A 72 -HVSLQLSEGLVGLVGQREEIVNL--ENASKHERFAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKQPQDFSEAAES 148 (171)
T ss_dssp -TCEEETTSHHHHHHHHHTSCEEE--SSGGGSTTC---------CCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHH
T ss_pred -ceeeeccCCeehhhhccCceEEe--cCCCcCcchhccccccccccceEEEEeEEECCEEEEEEEEecCCCCCCCHHHHH
Confidence 01366788999999999999999 442 111 1 123389999999982 3899999886533 3445
Q ss_pred HHHHHHHHcc
Q 045155 150 VIDFIIAQCN 159 (582)
Q Consensus 150 ~v~~vk~~f~ 159 (582)
+++.+-.++.
T Consensus 149 ~l~~la~~~a 158 (171)
T 3ci6_A 149 FLVTLCAQLS 158 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 35
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=90.58 E-value=0.17 Score=44.78 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=71.7
Q ss_pred HHHHHHHHhccCCCCCcEEEEeeecCCCceEEEcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchhhhHhhc
Q 045155 5 QTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQ 84 (582)
Q Consensus 5 ~~Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s~~~~~~d~~~~~~~t~~~~~l~~ 84 (582)
+.|+..++.++.-.+++++.+|.+.++...+.=..|+ ... .+..
T Consensus 32 ~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~~~~~~g~---~~~---------------------------------~~~~ 75 (181)
T 3e0y_A 32 EVLQHVTAKVATQLKVSVCNIYLREGDEVVLAATHGF---DPA---------------------------------FIGK 75 (181)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEEEEETTEEEEEEEESS---CGG---------------------------------GTTT
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEEcCCCceEEEecCC---CHH---------------------------------Hhcc
Confidence 4466667777777789999999998775422211111 000 0000
Q ss_pred ccccccCCCcceeeeeccCCceeeeccCC-cch------HHHhhcCCeEEEEeeC-----CcEEeecccccc---cCChH
Q 045155 85 LPSSMPLDSGIYAQSLISNQPRWLNFSNS-ADL------EVMEETLWTRVLIPIM-----GGLIELFATKEV---SEDPH 149 (582)
Q Consensus 85 M~~s~~~g~G~~G~~~~sg~~~Wi~~~~~-~~~------~~~~~gIqTiv~iPv~-----~GVvELGS~~~i---~Ed~~ 149 (582)
..++++.|+.|+++.++++.++ .+. .++ .....|++.++|||+. -|||.+++.+.- .+|..
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~~i--~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~ 151 (181)
T 3e0y_A 76 --IRIKIGDGITGSVARDGQYISL--SRASQDPRYRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNTTSIRSFHEDEIY 151 (181)
T ss_dssp --CEEETTTSSHHHHHHHCCCEEE--EEECCCCCC---------CEEEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHH
T ss_pred --ccccCCCCeeeehhhcCCeEEe--cCcccCccccccccccccCcceEEEEEEEeCCeEEEEEEEeeCCCCCCCHHHHH
Confidence 1367789999999999999999 432 111 1123389999999993 389999988643 34555
Q ss_pred HHHHHHHHcc
Q 045155 150 VIDFIIAQCN 159 (582)
Q Consensus 150 ~v~~vk~~f~ 159 (582)
+++.+-.+++
T Consensus 152 ~l~~la~~~a 161 (181)
T 3e0y_A 152 FVSIIANLIL 161 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5655555554
No 36
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=90.20 E-value=1.3 Score=45.14 Aligned_cols=69 Identities=12% Similarity=0.191 Sum_probs=54.4
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEe--ecCCEEEEEEEEEeC--CCcccCHHHHHHHHHHHHh
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVT--SRTGLVSNVFNVKKR--DNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvS--t~~g~vl~tf~vKv~--d~~~vsae~Ik~aL~~vir 536 (582)
..+.|.|.|++|+|+..+|-..|-++|+.|+.++.+ ...++++-.+.+... + ...+.++++++|..+..
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~~~~~~~L~~~f~~la~ 81 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDA-DALRVDALRREFEPIAE 81 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC-----CCHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcc-cCCCHHHHHHHHHHHHH
Confidence 458899999999999999999999999999999988 355666655555544 2 13778999999987654
No 37
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=90.18 E-value=0.26 Score=46.02 Aligned_cols=68 Identities=10% Similarity=0.223 Sum_probs=49.5
Q ss_pred ccCCCcceeeeeccCCceeeeccCC-cchHHHh--hcCCeEEEEeeC-----CcEEeecccccc---cCChHHHHHHHHH
Q 045155 89 MPLDSGIYAQSLISNQPRWLNFSNS-ADLEVME--ETLWTRVLIPIM-----GGLIELFATKEV---SEDPHVIDFIIAQ 157 (582)
Q Consensus 89 ~~~g~G~~G~~~~sg~~~Wi~~~~~-~~~~~~~--~gIqTiv~iPv~-----~GVvELGS~~~i---~Ed~~~v~~vk~~ 157 (582)
+++|+|+.|+|+.+|+++.| .+. .++.+++ .+++..+|||+. =|||++.+.+.- .+|..+++.+-.+
T Consensus 78 i~~geGi~G~v~~~g~~~~v--~Dv~~~p~~~~~~~~~~S~i~vPi~~~g~viGVL~i~s~~~~~F~~~d~~~L~~lA~~ 155 (167)
T 3mmh_A 78 IPFGRGVCGQAWAKGGTVVV--GDVDAHPDHIACSSLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETDALYLGELAKI 155 (167)
T ss_dssp EETTSHHHHHHHHHTSCEEE--SCGGGSTTCCCSSTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred eccCCChHHHHHhCCcEEEE--CCcccCcchhhcCccCCeEEEEEeccCCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 78899999999999999999 553 2333322 388999999992 489999986543 3456666655554
Q ss_pred c
Q 045155 158 C 158 (582)
Q Consensus 158 f 158 (582)
.
T Consensus 156 l 156 (167)
T 3mmh_A 156 L 156 (167)
T ss_dssp H
T ss_pred H
Confidence 4
No 38
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=90.11 E-value=0.67 Score=41.95 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=32.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR 504 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~ 504 (582)
-|+|.|.+|+|+|.+|+.+|.+.++++..+++.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 47899999999999999999999999999999776
No 39
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=89.70 E-value=0.51 Score=41.13 Aligned_cols=117 Identities=12% Similarity=0.166 Sum_probs=75.2
Q ss_pred HHHHHHHHhccCCCCCcEEEEeeecCCCceEEEcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchhhhHhhc
Q 045155 5 QTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQ 84 (582)
Q Consensus 5 ~~Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s~~~~~~d~~~~~~~t~~~~~l~~ 84 (582)
+.|+..++.++...+++++.+|-+.++...|...-++- .... .+..
T Consensus 19 ~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g--~~~~--------------------------------~~~~ 64 (169)
T 3oov_A 19 EVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVG--TADF--------------------------------NPAG 64 (169)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEES--CSSC--------------------------------CCTT
T ss_pred HHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeC--chhh--------------------------------hhhc
Confidence 45777778888888999999999987754444333222 1110 0000
Q ss_pred ccccccC--CCcceeeeeccCCceeeeccCCc-chH---------HH-hhcCCeEEEEeeC-----CcEEeeccccc---
Q 045155 85 LPSSMPL--DSGIYAQSLISNQPRWLNFSNSA-DLE---------VM-EETLWTRVLIPIM-----GGLIELFATKE--- 143 (582)
Q Consensus 85 M~~s~~~--g~G~~G~~~~sg~~~Wi~~~~~~-~~~---------~~-~~gIqTiv~iPv~-----~GVvELGS~~~--- 143 (582)
+ .|++ +.|+.|+++.++++.++ .+.. ++. .+ ..|++.++|+|+. -|||.+++...
T Consensus 65 ~--~~~~~~~~~~~~~~~~~~~~~~i--~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~~ 140 (169)
T 3oov_A 65 V--VLPLDQRGGVITKCFTDRQVYMI--DDVSAYPTDFRLQSPYDAIRALRSKSFVICPIVVKGEAIGVFAVDNRSSRRS 140 (169)
T ss_dssp C--EEESSGGGHHHHHHHHHTCCEEE--SCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEEETTEEEEEEEEECTTSSSC
T ss_pred c--cCCcccccchHHHHHhcCCCEEe--ccccchhhhhhccccHHHHHhcCcCcEEEEEEEeCCcEEEEEEEEccccCCC
Confidence 1 2444 68999999999999999 4421 111 11 2389999999993 38999998643
Q ss_pred -ccCChHHHHHHHHHcc
Q 045155 144 -VSEDPHVIDFIIAQCN 159 (582)
Q Consensus 144 -i~Ed~~~v~~vk~~f~ 159 (582)
=.+|..+++.+-.+.+
T Consensus 141 f~~~d~~~l~~~a~~~a 157 (169)
T 3oov_A 141 LNDTDVDTIKLFADQAS 157 (169)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 2455666666655554
No 40
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=87.43 E-value=0.7 Score=43.35 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=48.7
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC--CEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 045155 469 FFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT--GLVSNVFNVKKRDNEMVQADHVRDSLLELT 535 (582)
Q Consensus 469 v~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~--g~vl~tf~vKv~d~~~vsae~Ik~aL~~vi 535 (582)
..|.|..++++|+|.+|...|.+.|+.|.+.++.... +....+|.+. .+ .-..++|...|.++.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d--~~~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GD--EKVLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SC--HHHHHHHHHHHHHST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-cc--HHHHHHHHHHHcCCC
Confidence 4678888999999999999999999999999987544 5666677766 22 345566666666543
No 41
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=86.30 E-value=2.6 Score=42.81 Aligned_cols=74 Identities=14% Similarity=0.237 Sum_probs=53.1
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEe--ecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHhCCchhhh
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVT--SRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAREWI 543 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvS--t~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~~~~~~ 543 (582)
..+.|.|.|++|+|+..+|-..|-++|+.|+.++.. ...++++-.+.+.... ...++++++|..+..+-.-.|.
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~---~~~~~L~~~f~~la~~~~m~~~ 81 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV---AGVNDFNSAFGKVVEKYNAEWW 81 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC------CHHHHHHHHHHGGGTCEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC---CCHHHHHHHHHHHHHHcCCeeE
Confidence 358899999999999999999999999999999986 3456665544444432 3455899998776553222444
No 42
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=85.33 E-value=3 Score=37.04 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=47.6
Q ss_pred CCCcceeeeeccCCceeeeccCC-c--ch---HHH-hhcCCeEEEEee------CCcEEeecc-cccc---cCChHHHHH
Q 045155 91 LDSGIYAQSLISNQPRWLNFSNS-A--DL---EVM-EETLWTRVLIPI------MGGLIELFA-TKEV---SEDPHVIDF 153 (582)
Q Consensus 91 ~g~G~~G~~~~sg~~~Wi~~~~~-~--~~---~~~-~~gIqTiv~iPv------~~GVvELGS-~~~i---~Ed~~~v~~ 153 (582)
.++|+.|+++.+|+++.+ .+. . .. ..+ ..|++..++||+ .-|||.+++ ...- .+|..+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~v--~d~~~~~~~~~~~~~~~~g~~s~~~vPl~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~ 147 (181)
T 2qyb_A 70 EIETYIGEAFLSNRLQFV--NDTQYMTKPLTRELMQKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLES 147 (181)
T ss_dssp CTTSHHHHHHHHTSCEEE--SCGGGCSCHHHHHHHHHTTCCEEEEEEECCTTSCCCEEEEEEESSCSSCCCHHHHHHHHH
T ss_pred CCCCchhhhhhcCCCEEe--cChhcCCchhhHHHHHhcCcceEEEEEEEeCCCeEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 377999999999999998 442 1 11 122 239999999998 348999998 5443 355667776
Q ss_pred HHHHccc
Q 045155 154 IIAQCNI 160 (582)
Q Consensus 154 vk~~f~~ 160 (582)
+-.+++.
T Consensus 148 la~~~a~ 154 (181)
T 2qyb_A 148 LAGQLAQ 154 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666653
No 43
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=84.90 E-value=0.27 Score=46.45 Aligned_cols=70 Identities=13% Similarity=0.247 Sum_probs=50.7
Q ss_pred cccCCCcceeeeeccCCceeeeccCC-cchHHHh--hcCCeEEEEeeC-----CcEEeecccccc---cCChHHHHHHHH
Q 045155 88 SMPLDSGIYAQSLISNQPRWLNFSNS-ADLEVME--ETLWTRVLIPIM-----GGLIELFATKEV---SEDPHVIDFIIA 156 (582)
Q Consensus 88 s~~~g~G~~G~~~~sg~~~Wi~~~~~-~~~~~~~--~gIqTiv~iPv~-----~GVvELGS~~~i---~Ed~~~v~~vk~ 156 (582)
.+++|+|+.|+|+.+|+++-| .+. .++..++ .+.+..+|||+. =|||.+.|...- .+|..+++.+-.
T Consensus 77 ri~~GeGv~G~va~tg~~i~V--~Dv~~~p~~i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~ 154 (171)
T 3rfb_A 77 RIALGKGVCGEAAHFQETVIV--GDVTTYLNYISCDSLAKSEIVVPMMKNGQLLGVLDLDSSEIEDYDAMDRDYLEQFVA 154 (171)
T ss_dssp EEETTSHHHHHHHHTTSCEEE--SCTTSCSSCCCSCTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHhhCCEEEE--CCcccCccccccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 488899999999999999999 663 2333222 267899999992 389999986543 456666666666
Q ss_pred Hcc
Q 045155 157 QCN 159 (582)
Q Consensus 157 ~f~ 159 (582)
+..
T Consensus 155 ~la 157 (171)
T 3rfb_A 155 ILL 157 (171)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 44
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=84.77 E-value=0.43 Score=42.87 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=45.6
Q ss_pred cccCCCcceeeeeccCCceeeeccCC-cchHHHhhcCCeEEEEeeC-----CcEEeeccc-ccccC---ChHHHHHHHHH
Q 045155 88 SMPLDSGIYAQSLISNQPRWLNFSNS-ADLEVMEETLWTRVLIPIM-----GGLIELFAT-KEVSE---DPHVIDFIIAQ 157 (582)
Q Consensus 88 s~~~g~G~~G~~~~sg~~~Wi~~~~~-~~~~~~~~gIqTiv~iPv~-----~GVvELGS~-~~i~E---d~~~v~~vk~~ 157 (582)
.+++++|+.|+++.+|+++++ .+. .++ |++.++|||.. -|||.|+.. ..-.- |..++..+-++
T Consensus 55 ~~~~~~g~~g~v~~~g~~v~v--~d~~~d~-----~~~s~l~vPL~~~~~~~GvL~l~~~~~~~~f~~~d~~ll~~lA~~ 127 (149)
T 2vjw_A 55 AIPVQDNAIGQAFRDRAPRRL--DVLDGPG-----LGGPALVLPLRATDTVAGVLVAVQGSGARPFTAEQLEMMTGFADQ 127 (149)
T ss_dssp EEESSSSHHHHHHHHCCCEEE--SCCCTTS-----CEEEEEEEEEEETTEEEEEEEEEEETTCCCCCHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHhhcCceEEe--cCcccCC-----CCCeEEEEEEccCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Confidence 367799999999999999999 553 232 89999999983 299999887 43333 44444444433
No 45
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=84.65 E-value=1.5 Score=43.19 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=43.8
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC-----CEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 045155 468 EFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT-----GLVSNVFNVKKRDNEMVQADHVRDSLLE 533 (582)
Q Consensus 468 ev~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~-----g~vl~tf~vKv~d~~~vsae~Ik~aL~~ 533 (582)
.+.|.|.+.+|+|+|.+|+.+|.+.+..|.+.+..+.. +...-+ +++.+. ..+++-+.|.+
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d~---~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEGG---DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECSS---CHHHHHHHHHT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECCC---CHHHHHHHHhC
Confidence 46788889999999999999999999999999998864 343333 777653 77777776654
No 46
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=84.62 E-value=1.2 Score=41.88 Aligned_cols=64 Identities=14% Similarity=0.251 Sum_probs=48.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecC--CEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 045155 469 FFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRT--GLVSNVFNVKKRDNEMVQADHVRDSLLELT 535 (582)
Q Consensus 469 v~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~--g~vl~tf~vKv~d~~~vsae~Ik~aL~~vi 535 (582)
..|.|..+++||+|.+|...|...|+.|.+.++.... +....+|.+.- + .-..++|...|.++.
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~-d--~~~leql~kQL~Kl~ 70 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG-P--DEIVEQITKQLNKLI 70 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE-C--HHHHHHHHHHHHHST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec-c--HHHHHHHHHHhcCCC
Confidence 4677888899999999999999999999999987543 66777777762 2 345556666666543
No 47
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=84.51 E-value=0.28 Score=43.74 Aligned_cols=124 Identities=14% Similarity=0.170 Sum_probs=72.4
Q ss_pred HHHHHHHhccCCCCCcEEEEeeecCCCceEEEcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchhhhHhhcc
Q 045155 6 TLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQL 85 (582)
Q Consensus 6 ~Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s~~~~~~d~~~~~~~t~~~~~l~~M 85 (582)
.|+..|+.++.-.+.++|.+|.+.++...|...-......... . .. .....
T Consensus 32 ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~-----~----~~--------------------~~~~~ 82 (189)
T 2zmf_A 32 LLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEG-----K----PV--------------------FKKTK 82 (189)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETT-----E----EC--------------------CEECC
T ss_pred HHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEeccccccc-----c----cc--------------------ccccc
Confidence 3555666666667899999999988754332211111110000 0 00 00000
Q ss_pred cccccCCCcceeeeeccCCceeeeccCCc-ch------HHHh-hcCCeEEEEee-C----CcEEeeccccc----ccCCh
Q 045155 86 PSSMPLDSGIYAQSLISNQPRWLNFSNSA-DL------EVME-ETLWTRVLIPI-M----GGLIELFATKE----VSEDP 148 (582)
Q Consensus 86 ~~s~~~g~G~~G~~~~sg~~~Wi~~~~~~-~~------~~~~-~gIqTiv~iPv-~----~GVvELGS~~~----i~Ed~ 148 (582)
...++.+.|+.|+++.+|++.++ .+.. ++ .... .+++.++|+|+ . -|||.+..... =.+|.
T Consensus 83 ~~~~~~~~~~~~~v~~~~~~~~i--~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~d~ 160 (189)
T 2zmf_A 83 EIRFSIEKGIAGQVARTGEVLNI--PDAYADPRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDE 160 (189)
T ss_dssp CCEEETTSHHHHHHHHHCCCEEE--SCGGGSTTCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHH
T ss_pred ccccCCCccHHHHHHHhCCeEEE--ecccccccccccchhhcccccceEEEeeecccCceeeEEEEEEcCCCCCcCHHHH
Confidence 12378899999999999999999 5431 11 1222 27899999998 2 26777764432 23566
Q ss_pred HHHHHHHHHccc
Q 045155 149 HVIDFIIAQCNI 160 (582)
Q Consensus 149 ~~v~~vk~~f~~ 160 (582)
.+++.+-.+++.
T Consensus 161 ~ll~~lA~q~a~ 172 (189)
T 2zmf_A 161 NNFKMFAVFCAL 172 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666653
No 48
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=83.96 E-value=1 Score=38.41 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=71.5
Q ss_pred HHHHHHHHhccCCCCCcEEEEeeecCCCceEEEcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchhhhHhhc
Q 045155 5 QTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQ 84 (582)
Q Consensus 5 ~~Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s~~~~~~d~~~~~~~t~~~~~l~~ 84 (582)
+.|+..++.++.-.+.+++.+|.+.++. .|.+.-.+ |... . .+..
T Consensus 9 ~~l~~i~~~~~~~~~~~~~~i~l~d~~~-~l~~~~~~--g~~~-----------------------------~---~~~~ 53 (153)
T 2w3g_A 9 ATLRAIVHSATSLVDARYGAMEVHDRQH-RVLHFVYE--GIDE-----------------------------E---TVRR 53 (153)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEECTTC-CEEEEEEE--SCCH-----------------------------H---HHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEECCCC-CEEEEEEe--cCCH-----------------------------H---HHHh
Confidence 4466667777777799999999887442 22221111 1000 0 1111
Q ss_pred ccccccCCCcceeeeeccCCceeeeccCCc-chH-----HHhhcCCeEEEEeeC-----CcEEeeccccc----ccCChH
Q 045155 85 LPSSMPLDSGIYAQSLISNQPRWLNFSNSA-DLE-----VMEETLWTRVLIPIM-----GGLIELFATKE----VSEDPH 149 (582)
Q Consensus 85 M~~s~~~g~G~~G~~~~sg~~~Wi~~~~~~-~~~-----~~~~gIqTiv~iPv~-----~GVvELGS~~~----i~Ed~~ 149 (582)
+ ..++.+.|+.|+++.++++.++ .+.. ++. ....|++.+++||+. -|||.+++... -.+|..
T Consensus 54 ~-~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~~~~ 130 (153)
T 2w3g_A 54 I-GHLPKGLGVIGLLIEDPKPLRL--DDVSAHPASIGFPPYHPPMRTFLGVPVRVRDESFGTLYLTDKTNGQPFSDDDEV 130 (153)
T ss_dssp H-CSCCCSCTHHHHHHHSCSCEEE--SSGGGSTTCCCCCTTCCCCCCEEEEEEEETTEEEEEEEEEEETTSCCCCHHHHH
T ss_pred h-ccCCCCCCHHHHHHhcCCcEEe--cCcccCchhcCCCCcCCCCCeEEEeeEEECCEEEEEEEEeeCCCCCCCCHHHHH
Confidence 0 1356689999999999999999 4421 111 122389999999982 38999998765 234555
Q ss_pred HHHHHHHHcc
Q 045155 150 VIDFIIAQCN 159 (582)
Q Consensus 150 ~v~~vk~~f~ 159 (582)
+++.+-.++.
T Consensus 131 ~l~~la~~~a 140 (153)
T 2w3g_A 131 LVQALAAAAG 140 (153)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555543
No 49
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=83.70 E-value=2.3 Score=36.61 Aligned_cols=112 Identities=11% Similarity=0.120 Sum_probs=66.1
Q ss_pred HHHHHHHHhccCCCCCcEEEEeeecCCCceEEEcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchhhhHhhc
Q 045155 5 QTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQ 84 (582)
Q Consensus 5 ~~Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s~~~~~~d~~~~~~~t~~~~~l~~ 84 (582)
+.|+..++.++.-.+.++|.+|.+.++. .|...-.+ |.. -.+...
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~i~l~d~~~-~l~~~a~~--g~~--------------------------------~~~~~~ 50 (151)
T 3hcy_A 6 EVYEATLDAIQGALNCDRASILLFDEAG-TMRFVAAR--GLS--------------------------------EHYQRA 50 (151)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEECTTS-CEEEEEEE--SCC--------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEEcCCC-cEEEEeeC--CCC--------------------------------HHHHhh
Confidence 4466677777777788999999887664 33331110 100 001111
Q ss_pred ccccccCCCcceeeeeccCCceeeeccCC-cch---H---HH-hhcCCeEEEEeeC-----CcEEeeccccccc---CCh
Q 045155 85 LPSSMPLDSGIYAQSLISNQPRWLNFSNS-ADL---E---VM-EETLWTRVLIPIM-----GGLIELFATKEVS---EDP 148 (582)
Q Consensus 85 M~~s~~~g~G~~G~~~~sg~~~Wi~~~~~-~~~---~---~~-~~gIqTiv~iPv~-----~GVvELGS~~~i~---Ed~ 148 (582)
..|.|..|+++.+|+++++ .+. .++ . .+ ..|++..++||+. -|||.+.+.+.-. +|.
T Consensus 51 -----~~~~~~~~~~~~~~~~~~i--~d~~~~~~~~~~~~~~~~~g~~s~~~vPl~~~~~~iGvl~~~~~~~~~f~~~~~ 123 (151)
T 3hcy_A 51 -----VDGHSPWITGANEPEPIFV--ENVDDAEFSRELKESIVGEGIAALGFFPLVTEGRLIGKFMTYYDRPHRFADSEI 123 (151)
T ss_dssp -----TCBCCSCC---CCCCCEEE--SCGGGSCCCHHHHHHHHHHTCCEEEEEEEESSSSEEEEEEEEESSCCCCCHHHH
T ss_pred -----ccCCCchhhhhhcCCcEEE--eChhhCcccchhHHHHHhcCchheEEeceEECCEEEEEEEEecCCCCCCCHHHH
Confidence 3478899999999999999 552 111 1 22 2399999999993 3788888765433 344
Q ss_pred HHHHHHHHHc
Q 045155 149 HVIDFIIAQC 158 (582)
Q Consensus 149 ~~v~~vk~~f 158 (582)
.+++.+-.+.
T Consensus 124 ~ll~~~a~~~ 133 (151)
T 3hcy_A 124 GMALTIARQL 133 (151)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444444
No 50
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=83.46 E-value=0.36 Score=44.97 Aligned_cols=69 Identities=12% Similarity=0.256 Sum_probs=49.2
Q ss_pred cccCCCcceeeeeccCCceeeeccCC-cchHHHh--hcCCeEEEEee-C----CcEEeecccccc---cCChHHHHHHHH
Q 045155 88 SMPLDSGIYAQSLISNQPRWLNFSNS-ADLEVME--ETLWTRVLIPI-M----GGLIELFATKEV---SEDPHVIDFIIA 156 (582)
Q Consensus 88 s~~~g~G~~G~~~~sg~~~Wi~~~~~-~~~~~~~--~gIqTiv~iPv-~----~GVvELGS~~~i---~Ed~~~v~~vk~ 156 (582)
.+++|+|+.|+|+.+|+++-| .+. .++.+++ .+.+..+|||+ . =|||.+.|...- .+|..+++.+-.
T Consensus 76 ri~~GeGv~G~aa~~~~~i~V--~Dv~~~p~~i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~ 153 (160)
T 3ksh_A 76 HIPIGKGVCGTAVSERRTQVV--ADVHQFKGHIACDANSKSEIVVPIFKDDKIIGVLDIDAPITDRFDDNDKEHLEAIVK 153 (160)
T ss_dssp EEETTSHHHHHHHHHTSCEEE--SCGGGSTTCCGGGTTCSEEEEEEEEETTEEEEEEEEEESSSSCCCHHHHHHHHHHHH
T ss_pred EeeCCCCHHHHHHhhCCEEEE--CCcccCccccccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 388899999999999999999 663 2333222 27899999999 2 389999986543 355555555544
Q ss_pred Hc
Q 045155 157 QC 158 (582)
Q Consensus 157 ~f 158 (582)
+.
T Consensus 154 ~l 155 (160)
T 3ksh_A 154 II 155 (160)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 51
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=81.73 E-value=3.3 Score=39.85 Aligned_cols=64 Identities=17% Similarity=0.336 Sum_probs=48.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec--CCEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 045155 469 FFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR--TGLVSNVFNVKKRDNEMVQADHVRDSLLELT 535 (582)
Q Consensus 469 v~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~--~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vi 535 (582)
..|.|.-+++||.|.+|...|...|+.|.+.++... .+....+|.+.-. .-..++|...|.+++
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~---e~~ieqL~kQL~KLi 95 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD---DKTIEQIEKQAYKLV 95 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC---TTHHHHHHHHHTTST
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC---HHHHHHHHHHhcCcC
Confidence 467777789999999999999999999999888643 3567777777632 245666666666543
No 52
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=81.22 E-value=0.92 Score=45.61 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=50.8
Q ss_pred ccCCCcceeeeeccCCceeeeccCCc-chH-----HHhhcC--CeEEEEee-CC-----cEEeecccccc----cCChHH
Q 045155 89 MPLDSGIYAQSLISNQPRWLNFSNSA-DLE-----VMEETL--WTRVLIPI-MG-----GLIELFATKEV----SEDPHV 150 (582)
Q Consensus 89 ~~~g~G~~G~~~~sg~~~Wi~~~~~~-~~~-----~~~~gI--qTiv~iPv-~~-----GVvELGS~~~i----~Ed~~~ 150 (582)
++.+.|+.|+++.+|++.++ .+.. ++. ....|+ +.++|||+ .+ |||.|++...- .+|..+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~i--~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f~~~d~~l 323 (368)
T 1mc0_A 246 IPADQGIAGHVATTGQILNI--PDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDL 323 (368)
T ss_dssp ECTTSHHHHHHHHHCCCEEE--SCSTTCTTCCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSCCHHHHHH
T ss_pred ecCCCceeeeehhhCCEEEe--cCcccCcccchhhhhccCCccceEEEEeeECCCCcEEEEEEEEECCCCCCCCHHHHHH
Confidence 67789999999999999999 5532 111 112254 99999999 44 89999987553 466777
Q ss_pred HHHHHHHcccc
Q 045155 151 IDFIIAQCNIS 161 (582)
Q Consensus 151 v~~vk~~f~~l 161 (582)
++.+-.+++..
T Consensus 324 l~~la~~~a~a 334 (368)
T 1mc0_A 324 ATAFSIYCGIS 334 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776666543
No 53
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=80.36 E-value=0.3 Score=43.73 Aligned_cols=121 Identities=14% Similarity=0.148 Sum_probs=74.7
Q ss_pred HHHHHHHHhccCCCCCcEEEEeeecCCCceEE---EcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchhhhH
Q 045155 5 QTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIA---WIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCEL 81 (582)
Q Consensus 5 ~~Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~---W~Dg~c~g~~~~~~~~~~e~~~~~s~~~~~~d~~~~~~~t~~~~~ 81 (582)
+.|+..++.++.-.+.++|.+|-+.++...|. +..|....... . .
T Consensus 31 ~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~------------~------~-------------- 78 (189)
T 2e4s_A 31 SLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKP------------V------F-------------- 78 (189)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEEEEEEEETTEE------------E------E--------------
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEEECCCCEEEEEEeccCccccccc------------c------c--------------
Confidence 34555666666677899999999988743222 22221110000 0 0
Q ss_pred hhcccccccCCCcceeeeeccCCceeeeccCC-cch------HHH-hhcCCeEEEEee-----CCcEEeecccccc----
Q 045155 82 LSQLPSSMPLDSGIYAQSLISNQPRWLNFSNS-ADL------EVM-EETLWTRVLIPI-----MGGLIELFATKEV---- 144 (582)
Q Consensus 82 l~~M~~s~~~g~G~~G~~~~sg~~~Wi~~~~~-~~~------~~~-~~gIqTiv~iPv-----~~GVvELGS~~~i---- 144 (582)
-......++.+.|+.|+++.+++++++ .+. .++ ..+ ..+++.++|||+ .-|||.|++...-
T Consensus 79 ~~~~~~~~~~~~~~~~~v~~~~~~~~i--~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~l~~~~~~~~f~ 156 (189)
T 2e4s_A 79 KKTKEIRFSIEKGIAGQVARTGEVLNI--PDAYADPRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFS 156 (189)
T ss_dssp EECCCCEEETTSHHHHHHHHHCCCEEE--SCGGGSTTCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCC
T ss_pred cCCcceEeeCCCcHHHHHHHhCCEEEe--cCCCcCcccChhhccccCCccceEEEEEeccCCeEEEEEEEEeCCCCCCCC
Confidence 000012377899999999999999999 552 111 112 238899999999 2489999987644
Q ss_pred cCChHHHHHHHHHcc
Q 045155 145 SEDPHVIDFIIAQCN 159 (582)
Q Consensus 145 ~Ed~~~v~~vk~~f~ 159 (582)
.+|..+++.+-.++.
T Consensus 157 ~~d~~ll~~la~~~a 171 (189)
T 2e4s_A 157 KTDENNFKMFAVFCA 171 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677776666654
No 54
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=76.27 E-value=2.7 Score=42.81 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=63.3
Q ss_pred HHHHHHHHhccCCCCCcEEEEeeecCCCceEEEcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchhhhHhhc
Q 045155 5 QTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQ 84 (582)
Q Consensus 5 ~~Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s~~~~~~d~~~~~~~t~~~~~l~~ 84 (582)
+.|+..++.++.-.+.+++.+|.+.++...|...-. ..+.. +.
T Consensus 217 ~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~-~~~~~-----------------------------------~~- 259 (398)
T 1ykd_A 217 DTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKIT-QDNGS-----------------------------------TK- 259 (398)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEE-CSSSC-----------------------------------EE-
T ss_pred HHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEe-cCCCc-----------------------------------ee-
Confidence 345555666666778999999999887544432211 00000 00
Q ss_pred ccccccCCCcceeeeeccCCceeeecc-CCc-ch---HH--H-h-h--cCCeEEEEeeCC------cEEeecccc
Q 045155 85 LPSSMPLDSGIYAQSLISNQPRWLNFS-NSA-DL---EV--M-E-E--TLWTRVLIPIMG------GLIELFATK 142 (582)
Q Consensus 85 M~~s~~~g~G~~G~~~~sg~~~Wi~~~-~~~-~~---~~--~-~-~--gIqTiv~iPv~~------GVvELGS~~ 142 (582)
...++++.|+.|+++.+|+++++ . +.. ++ .. + . . +++.++|||+.. |||.|.+..
T Consensus 260 -~~~~~~~~~~~~~v~~~~~~~~i--~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~ 331 (398)
T 1ykd_A 260 -ELRVPIGKGFAGIVAASGQKLNI--PFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKK 331 (398)
T ss_dssp -EEEEETTSHHHHHHHHHCCCEEE--CSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEEC
T ss_pred -eeeccCCCchhhHHhccCCeEEe--ccccccCcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecC
Confidence 01367789999999999999999 5 432 11 11 2 1 1 467799999964 999998876
No 55
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=76.00 E-value=1.8 Score=48.66 Aligned_cols=114 Identities=19% Similarity=0.195 Sum_probs=74.8
Q ss_pred HHHHHHHHhccCCCCCcEEEEeeecCCCceEEEcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchhhhHhhc
Q 045155 5 QTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQ 84 (582)
Q Consensus 5 ~~Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s~~~~~~d~~~~~~~t~~~~~l~~ 84 (582)
+.|+..|+.+++..+-+++.+|.+.++...|. ... ..|... ..
T Consensus 31 ~ll~~il~~l~~~l~ad~~~i~L~d~~~~~l~-~~~-~~g~~~----------------------------~~------- 73 (691)
T 3ibj_A 31 SLQLKVLQYLQQETRASRCCLLLVSEDNLQLS-CKV-IGDKVL----------------------------GE------- 73 (691)
T ss_dssp HHHHHHHHHHHHHTTBSCEEEEEECTTSSEEE-EEE-ETTEEE----------------------------EE-------
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEECCCCeEE-EEe-cCCCcc----------------------------cc-------
Confidence 45777788888888999999999988754442 100 011000 00
Q ss_pred ccccccCCCcceeeeeccCCceeeeccCCc-chHH-----HhhcCCeEEEEee-CC------cEEeeccccc----ccCC
Q 045155 85 LPSSMPLDSGIYAQSLISNQPRWLNFSNSA-DLEV-----MEETLWTRVLIPI-MG------GLIELFATKE----VSED 147 (582)
Q Consensus 85 M~~s~~~g~G~~G~~~~sg~~~Wi~~~~~~-~~~~-----~~~gIqTiv~iPv-~~------GVvELGS~~~----i~Ed 147 (582)
...++.| |+.|+++.+|+++++ .+.. ++.. ....+++++|||+ .+ |||.+..... -.+|
T Consensus 74 -~~~~p~~-Gi~g~v~~~~~pv~i--~d~~~~~~~~~~~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~~~~~~ft~~d 149 (691)
T 3ibj_A 74 -EVSFPLT-GCLGQVVEDKKSIQL--KDLTSEDVQQLQSMLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTDED 149 (691)
T ss_dssp -EEEEECC-SSSHHHHHHCCCEEG--GGSCHHHHHHHHHHHTSCCSCEEEEEEECSSSCSEEEEEEEESBSSSCCCCTTH
T ss_pred -ceecCCc-cHHHHHHHHCCeEEe--ccchhccccccccccCCccceEEEEEeEcCCCCcEEEEEEEEcCCCCCCCCHHH
Confidence 0137789 999999999999999 6643 2321 1126899999999 44 7999775432 3567
Q ss_pred hHHHHHHHHHcc
Q 045155 148 PHVIDFIIAQCN 159 (582)
Q Consensus 148 ~~~v~~vk~~f~ 159 (582)
..+++.+-.++.
T Consensus 150 ~~lL~~la~~~a 161 (691)
T 3ibj_A 150 EHVIQHCFHYTS 161 (691)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776655554
No 56
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=75.82 E-value=4.3 Score=36.56 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=68.7
Q ss_pred HHHHHHHHhccCCCCCcEEEEeeecCCCceEEEcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchhhhHhhc
Q 045155 5 QTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQ 84 (582)
Q Consensus 5 ~~Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s~~~~~~d~~~~~~~t~~~~~l~~ 84 (582)
+.|+..++.++...++++|.+|.+..+...+... .|...... ..|
T Consensus 47 ~il~~i~~~l~~~l~~d~~~i~l~~~~~~~~~~~-~~~~~~~~-----------------------------~~~----- 91 (184)
T 3p01_A 47 AILTPIATAFAESFAVNACILQMLEGQTLSTIQG-FYSQQGTV-----------------------------NNW----- 91 (184)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEETTEEEEEEE-EEESSSSC-----------------------------CCC-----
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCCceeeeee-eccccCcc-----------------------------Ccc-----
Confidence 3456666666666788999999984443333322 12221100 001
Q ss_pred ccccccCCCcceeeeeccCCceeeeccCC-cchH-----HHhh-cCCeEEEEeeC-----CcEEeecccccc---cCChH
Q 045155 85 LPSSMPLDSGIYAQSLISNQPRWLNFSNS-ADLE-----VMEE-TLWTRVLIPIM-----GGLIELFATKEV---SEDPH 149 (582)
Q Consensus 85 M~~s~~~g~G~~G~~~~sg~~~Wi~~~~~-~~~~-----~~~~-gIqTiv~iPv~-----~GVvELGS~~~i---~Ed~~ 149 (582)
++ +.|+.|+++.+|+++.| .+. .++. .+.. |++.++|||+. -|||.|.+...- .+|..
T Consensus 92 ----~~-~~~~~~~~~~~~~~~~i--~d~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~~~~~~~f~~~d~~ 164 (184)
T 3p01_A 92 ----LN-QDPLTNEAIATGQIQVA--ANIAKDPKLASISQYQDNGIQSHVVIPITYRNEMLGVLSLQWQQPISLREDELT 164 (184)
T ss_dssp ----GG-GCHHHHHHHHHCSCEEE--SCGGGCHHHHTCHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHH
T ss_pred ----cC-CCcHHHHHHhhCCeEEE--eccccCccccchhHHHHhCccEEEEEEEEECCEEEEEEEeCcCCCCCCCHHHHH
Confidence 22 47888999999999998 553 2222 2233 99999999983 389999665433 34566
Q ss_pred HHHHHHHHcc
Q 045155 150 VIDFIIAQCN 159 (582)
Q Consensus 150 ~v~~vk~~f~ 159 (582)
|++.+-.+.+
T Consensus 165 ll~~lA~q~a 174 (184)
T 3p01_A 165 LIHLSAQLVA 174 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655554
No 57
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=70.74 E-value=2 Score=43.11 Aligned_cols=115 Identities=21% Similarity=0.142 Sum_probs=72.7
Q ss_pred HHHHHHHHhccCCCCCcEEEEeeecCCCceEEEcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCchhhhHhhc
Q 045155 5 QTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQ 84 (582)
Q Consensus 5 ~~Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s~~~~~~d~~~~~~~t~~~~~l~~ 84 (582)
+.|+..++.++.-.+-++|.+|.+.++...|... +..|... .
T Consensus 30 ~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~--~~~g~~~----------------------------------~-- 71 (368)
T 1mc0_A 30 SLQLKVLQYLQQETQATHCCLLLVSEDNLQLSCK--VIGDKVL----------------------------------G-- 71 (368)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEEEECSSSCEEEEE--EETTEEE----------------------------------E--
T ss_pred HHHHHHHHHHHHHhCCcEEEEEEEeCCCCeEEEE--ecCCCcc----------------------------------c--
Confidence 3455666666666677889999887765333222 1111100 0
Q ss_pred ccccccCCCcceeeeeccCCceeeeccCCc-chH----HH-hhcCCeEEEEee-CC------cEEeeccccc----ccCC
Q 045155 85 LPSSMPLDSGIYAQSLISNQPRWLNFSNSA-DLE----VM-EETLWTRVLIPI-MG------GLIELFATKE----VSED 147 (582)
Q Consensus 85 M~~s~~~g~G~~G~~~~sg~~~Wi~~~~~~-~~~----~~-~~gIqTiv~iPv-~~------GVvELGS~~~----i~Ed 147 (582)
-...++.|.|+.|+++.+++++++ .+.. ++. .. ..+++.++|||+ .+ |||.|.+... -.+|
T Consensus 72 ~~~~~~~~~g~~g~~~~~~~~~~i--~d~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~~~f~~~d 149 (368)
T 1mc0_A 72 EEVSFPLTMGRLGQVVEDKQCIQL--KDLTSDDVQQLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFFTDED 149 (368)
T ss_dssp EEEEEESSSSSHHHHHHHCCCEEG--GGSCHHHHHHHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSCCSHH
T ss_pred cceeeccccCHHHHHHhcCCeEEe--cccccccccccccccCcccceEEEEEeecCCCCcEEEEEEeecCCCCCCCCHHH
Confidence 001377899999999999999999 5532 221 11 127899999999 44 8999876543 2456
Q ss_pred hHHHHHHHHHcc
Q 045155 148 PHVIDFIIAQCN 159 (582)
Q Consensus 148 ~~~v~~vk~~f~ 159 (582)
..+++.+-..++
T Consensus 150 ~~~l~~la~~~~ 161 (368)
T 1mc0_A 150 EHVIQHCFHYTG 161 (368)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677776666654
No 58
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=70.21 E-value=21 Score=30.24 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=36.6
Q ss_pred CCChHHHHHHHHHhC-CCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHhCCchhhhH
Q 045155 478 KPGGFVRLMEALNSL-GLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAREWIE 544 (582)
Q Consensus 478 r~glL~~Im~aLeeL-gLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~~~~~~~ 544 (582)
+|+.+..|.++|..+ |.+|.-+. ...|.++-++.+ -+.+++.+.| +.|++-......
T Consensus 15 ~p~~~~~V~~~L~~ipgvEi~~~~--~~~GkiVV~iEa-------~~~~~l~~~i-~~I~~i~GVlst 72 (95)
T 2jsx_A 15 KSERISDISTQLNAFPGCEVAVSD--APSGQLIVVVEA-------EDSETLIQTI-ESVRNVEGVLAV 72 (95)
T ss_dssp CTTSHHHHHHHHTTSTTEEEEEEE--TTTTEEEEEEEE-------SSHHHHHHHH-HHHTTSTTEEEE
T ss_pred CCCCHHHHHHHHHCCCCeEEEEec--CCCCCEEEEEEe-------CCHHHHHHHH-HHHhcCCCccEE
Confidence 788899999999998 66653222 334544444333 3567777766 777766665553
No 59
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=63.75 E-value=28 Score=30.66 Aligned_cols=42 Identities=14% Similarity=0.359 Sum_probs=30.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEE
Q 045155 471 IKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVF 512 (582)
Q Consensus 471 IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf 512 (582)
|-+.-+++||.+.+++++|.+.|+.|...-++..++.....|
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i 116 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI 116 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE
Confidence 444456899999999999999999997655542344444344
No 60
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=63.20 E-value=2.7 Score=47.18 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=53.1
Q ss_pred cccCCCcceeeeeccCCceeeeccCCc-chH---HH--hh--cCCeEEEEee--C-C---cEEeecccccc----cCChH
Q 045155 88 SMPLDSGIYAQSLISNQPRWLNFSNSA-DLE---VM--EE--TLWTRVLIPI--M-G---GLIELFATKEV----SEDPH 149 (582)
Q Consensus 88 s~~~g~G~~G~~~~sg~~~Wi~~~~~~-~~~---~~--~~--gIqTiv~iPv--~-~---GVvELGS~~~i----~Ed~~ 149 (582)
.++.|+|+.|+++.+|+++++ .+.. ++. .+ .. +++.++|+|+ . + |||.|.+...- .+|..
T Consensus 245 ~~~~~~gi~g~v~~~g~~v~i--~d~~~d~~~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f~~~d~~ 322 (691)
T 3ibj_A 245 RIPADQGIAGHVATTGQILNI--PDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDED 322 (691)
T ss_dssp EEETTSHHHHHHHHHCSCEEE--SCSTTSTTC------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSCCTTTTH
T ss_pred eccCCCCHHHHHHHhCCEEEe--cCcccCccccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCCCHHHHH
Confidence 367899999999999999999 5532 221 11 11 4889999998 3 2 89999876543 67889
Q ss_pred HHHHHHHHcccc
Q 045155 150 VIDFIIAQCNIS 161 (582)
Q Consensus 150 ~v~~vk~~f~~l 161 (582)
+++.+-.+++..
T Consensus 323 ll~~lA~~~aiA 334 (691)
T 3ibj_A 323 LATAFSIYCGIS 334 (691)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888877644
No 61
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=52.89 E-value=6 Score=40.23 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=38.1
Q ss_pred ccCCCcceeeeeccCCceeeeccCCc-c---hHH---H----hhcCCeEEEEeeC-C-----cEEeeccc
Q 045155 89 MPLDSGIYAQSLISNQPRWLNFSNSA-D---LEV---M----EETLWTRVLIPIM-G-----GLIELFAT 141 (582)
Q Consensus 89 ~~~g~G~~G~~~~sg~~~Wi~~~~~~-~---~~~---~----~~gIqTiv~iPv~-~-----GVvELGS~ 141 (582)
++.+.|+.|+++.+|++++| .+.. + +.+ + ..++++++|||+. . |||.+.+.
T Consensus 76 ~~~~~g~~g~v~~~~~~v~i--~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~ 143 (398)
T 1ykd_A 76 IPADKGIAGEVATFKQVVNI--PFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNK 143 (398)
T ss_dssp EETTSHHHHHHHHHCCCEEE--CSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEE
T ss_pred cCCCCchhhhhhccCcEEec--cchhcccchhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEecc
Confidence 67789999999999999999 5532 2 221 1 1268899999983 2 78888875
No 62
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=52.56 E-value=34 Score=31.61 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=40.4
Q ss_pred CceEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 466 GNEFFIKVFCE---HKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 466 g~ev~IkI~C~---kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
.+-+.|.|... .++|++.+++++|.+.|+.|.-.+ +..-.+. |.+. .-+.+...++|++.+.
T Consensus 93 ~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~Is--~vV~-----~~d~~~Av~~Lh~~F~ 157 (178)
T 2dtj_A 93 DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRIS--VLIR-----EDDLDAAARALHEQFQ 157 (178)
T ss_dssp SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEE--EEEE-----GGGHHHHHHHHHHHHT
T ss_pred CCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEE--EEEe-----HHHHHHHHHHHHHHHc
Confidence 45677777764 578999999999999999998754 3332222 2222 2345555566666554
No 63
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=52.51 E-value=9.7 Score=38.54 Aligned_cols=60 Identities=12% Similarity=-0.004 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhCC--CeEEEEEEeecCCEEEEEEEEEeCCCcc-cCHHHHHHHHHHHHhCCch
Q 045155 481 GFVRLMEALNSLG--LEVTNANVTSRTGLVSNVFNVKKRDNEM-VQADHVRDSLLELTRNPAR 540 (582)
Q Consensus 481 lL~~Im~aLeeLg--LdVvsAnvSt~~g~vl~tf~vKv~d~~~-vsae~Ik~aL~~vir~~~~ 540 (582)
...+|.+.+++.. .+|.+..+-..+..++-.+++.++++.. ..+++|.+++.+.+++.++
T Consensus 216 ~~~~I~~~i~~~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~ 278 (306)
T 3j1z_P 216 TRQRIKLIAKEDPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFE 278 (306)
T ss_dssp HHHHHHHHHHHSTTBCCCCCBCCEEETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhcCCCcceeeeEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCC
Confidence 3556666666652 4566666667787777788999987644 4678888888888887664
No 64
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.19 E-value=28 Score=27.17 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045155 336 ERKRRKKLNDRLYALRALVPIITKLDRATILVDAIEYVKQLQKQEKELKEELEENS 391 (582)
Q Consensus 336 ER~RR~~in~~~~~LrsLvP~~~K~dKasiL~~aI~YIk~Lq~~v~~L~~~~~~l~ 391 (582)
||++|.+...+..+.++= ..-..||..|+.+++.|+.+...|.
T Consensus 1 Ekr~rrrerNR~AA~rcR-------------~rKk~~~~~Le~~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR-------------NRRRELTDTLQAETDQLEDEKSALQ 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888887762 2345667777777777776666554
No 65
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=51.88 E-value=3.1 Score=48.29 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=0.0
Q ss_pred cccCCCcceeeeeccCCceeeeccCCc-chH---HH----hhcCCeEEEEeeCC------cEEeeccccc------ccCC
Q 045155 88 SMPLDSGIYAQSLISNQPRWLNFSNSA-DLE---VM----EETLWTRVLIPIMG------GLIELFATKE------VSED 147 (582)
Q Consensus 88 s~~~g~G~~G~~~~sg~~~Wi~~~~~~-~~~---~~----~~gIqTiv~iPv~~------GVvELGS~~~------i~Ed 147 (582)
.++.+.|+.|.++.+|++++| .+.. ++. .. ..++++++|||+.. |||+|.+... -.+|
T Consensus 225 ~~p~~~gi~g~v~~~g~pv~I--~D~~~dp~f~~~~~~~~~~~~~S~L~vPL~~~~g~viGvL~l~~~~~~~~~~ft~~D 302 (878)
T 3bjc_A 225 RLEWNKGIVGHVAALGEPLNI--KDAYEDPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKD 302 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeCCccHHHHHHhcCceEEe--CCcccCcccccccccccCCccceEEEEeeEcCCCCEEEEEEEEecCCCCCCCCCHHH
Confidence 478899999999999999999 5532 221 11 12688999999954 7999886542 3567
Q ss_pred hHHHHHHHHHcccc
Q 045155 148 PHVIDFIIAQCNIS 161 (582)
Q Consensus 148 ~~~v~~vk~~f~~l 161 (582)
..+++.+-.+++..
T Consensus 303 ~~lL~~lA~~~a~A 316 (878)
T 3bjc_A 303 EKDFAAYLAFCGIV 316 (878)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 77787777776644
No 66
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=48.95 E-value=80 Score=27.55 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=29.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeec
Q 045155 470 FIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSR 504 (582)
Q Consensus 470 ~IkI~C~kr~glL~~Im~aLeeLgLdVvsAnvSt~ 504 (582)
.|.|.-+++||.+.+|..+|.+.|+.|....+...
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~ 42 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAEN 42 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEec
Confidence 45556678999999999999999999998876543
No 67
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=48.44 E-value=57 Score=32.88 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=49.9
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEeecCC-EEEEEEEEEeCCCcccCHHHHHHHHHHHHhCC
Q 045155 476 EHKPGGFVRLMEALNSLGLEVTNANVTSRTG-LVSNVFNVKKRDNEMVQADHVRDSLLELTRNP 538 (582)
Q Consensus 476 ~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g-~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~ 538 (582)
+++||.|.++|..|...|++.+...+-...+ ..-|.|.+.+.+. ...+.++++|.++-+..
T Consensus 208 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~--~~d~~v~~aL~~L~~~~ 269 (283)
T 2qmx_A 208 PNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH--REDQNVHNALENLREFA 269 (283)
T ss_dssp ECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC--TTSHHHHHHHHHHHTTC
T ss_pred CCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC--CCcHHHHHHHHHHHHhc
Confidence 5889999999999999999999999887665 4667888888654 55577888888876543
No 68
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=46.78 E-value=4.1 Score=47.21 Aligned_cols=72 Identities=14% Similarity=0.241 Sum_probs=0.0
Q ss_pred cccCCCcceeeeeccCCceeeeccCCc-chH---H--Hh-----hcCCeEEEEee-CC------cEEeeccccc------
Q 045155 88 SMPLDSGIYAQSLISNQPRWLNFSNSA-DLE---V--ME-----ETLWTRVLIPI-MG------GLIELFATKE------ 143 (582)
Q Consensus 88 s~~~g~G~~G~~~~sg~~~Wi~~~~~~-~~~---~--~~-----~gIqTiv~iPv-~~------GVvELGS~~~------ 143 (582)
.++++.|+.|+++.+|+++++ .+.. ++. . .. .+++.++|||+ .+ |||+|.+...
T Consensus 407 ~~p~~~gi~g~v~~~g~~v~i--~D~~~d~r~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l~~~~~~~~G~~ 484 (878)
T 3bjc_A 407 ANKINYMYAQYVKNTMEPLNI--PDVSKDKRFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKV 484 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhhhHHHHHhhcCCeeee--cCcccccccccccccccCccccccceEEEEEEecCCCCcEEEEEEEEEcCCCcccCC
Confidence 467788999999999999999 5532 111 0 11 24899999998 33 8999977533
Q ss_pred ---ccCChHHHHHHHHHcccc
Q 045155 144 ---VSEDPHVIDFIIAQCNIS 161 (582)
Q Consensus 144 ---i~Ed~~~v~~vk~~f~~l 161 (582)
=.+|..+++.+-.+++..
T Consensus 485 ~~Ft~~d~~lL~~lA~~aaiA 505 (878)
T 3bjc_A 485 KPFNRNDEQFLEAFVIFCGLG 505 (878)
T ss_dssp ---------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 345777777776666544
No 69
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=45.93 E-value=1e+02 Score=31.65 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=50.1
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEeecCCE-EEEEEEEEeCCCcccCHHHHHHHHHHHHhCC
Q 045155 477 HKPGGFVRLMEALNSLGLEVTNANVTSRTGL-VSNVFNVKKRDNEMVQADHVRDSLLELTRNP 538 (582)
Q Consensus 477 kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~-vl~tf~vKv~d~~~vsae~Ik~aL~~vir~~ 538 (582)
++||.|.++|..|...|++.+...+-...+. .-|.|.+.+.+. ..-..|+++|.++-+..
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~--~~d~~v~~AL~~L~~~~ 277 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAA--PWEERFRDALVEIAEHG 277 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSC--TTSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCC--cCCHHHHHHHHHHHHhC
Confidence 5899999999999999999999999877664 567888988664 56678999999886654
No 70
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=45.39 E-value=57 Score=33.41 Aligned_cols=65 Identities=18% Similarity=0.344 Sum_probs=50.2
Q ss_pred EEEEcC-CCCChHHHHHHHHHhCCCeEEEEEEeecCC-EEEEEEEEEeCCCcccCHHHHHHHHHHHHhC
Q 045155 471 IKVFCE-HKPGGFVRLMEALNSLGLEVTNANVTSRTG-LVSNVFNVKKRDNEMVQADHVRDSLLELTRN 537 (582)
Q Consensus 471 IkI~C~-kr~glL~~Im~aLeeLgLdVvsAnvSt~~g-~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~ 537 (582)
|-+.-+ ++||.|.++|..|...|++.+...+-...+ ..-|.|.+.+.+. +.-+.++++|.++-+.
T Consensus 204 l~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~--~~d~~v~~aL~~L~~~ 270 (313)
T 3mwb_A 204 VVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGH--ATDSRVADALAGLHRI 270 (313)
T ss_dssp EEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESC--TTSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCC--CCcHHHHHHHHHHHHh
Confidence 334454 799999999999999999999999887654 3457788887654 5567788888887554
No 71
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=41.22 E-value=72 Score=31.88 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=48.0
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEeecCC-EEEEEEEEEeCCCcccCHHHHHHHHHHHHhC
Q 045155 476 EHKPGGFVRLMEALNSLGLEVTNANVTSRTG-LVSNVFNVKKRDNEMVQADHVRDSLLELTRN 537 (582)
Q Consensus 476 ~kr~glL~~Im~aLeeLgLdVvsAnvSt~~g-~vl~tf~vKv~d~~~vsae~Ik~aL~~vir~ 537 (582)
+++||.|.++|..|...|++.+...+-...+ ..-|.|.+.+. . ...+.++++|.++-+.
T Consensus 197 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~--~~d~~v~~aL~~L~~~ 256 (267)
T 2qmw_A 197 HDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S--AITTDIKKVIAILETL 256 (267)
T ss_dssp SCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C--CSCHHHHHHHHHHHHT
T ss_pred CCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c--CCcHHHHHHHHHHHHh
Confidence 5799999999999999999999999887664 45677888886 3 4557788888887654
No 72
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=40.12 E-value=56 Score=29.48 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=46.9
Q ss_pred ccCCCcceeeeeccCCceeeeccCCcch------H-HHhhcCCeEEEEee-----CCcEEeecccccc---cCChHHHHH
Q 045155 89 MPLDSGIYAQSLISNQPRWLNFSNSADL------E-VMEETLWTRVLIPI-----MGGLIELFATKEV---SEDPHVIDF 153 (582)
Q Consensus 89 ~~~g~G~~G~~~~sg~~~Wi~~~~~~~~------~-~~~~gIqTiv~iPv-----~~GVvELGS~~~i---~Ed~~~v~~ 153 (582)
++.+.++.++++.+++++=+ ....+. . ....|+++++|||. .-|||-|++...- .+|..+++.
T Consensus 55 ip~~~s~~~~v~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~S~l~vPL~~~~~~iGvl~l~~~~~~~f~~~d~~~l~~ 132 (165)
T 3o5y_A 55 IPKEQSLYWSALDQRQTIFR--SLTDTQDNFYEKQYLAILDLKSILVIPIYSKNKRVGVLSIGRKQQIDWSLDDLAFLEQ 132 (165)
T ss_dssp ECSTTCHHHHHHHHTSCEEE--ESCCTTCCCTTHHHHHTTTCCEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHHH
T ss_pred cCCccCHHHHHHHhCCeEEE--cCcccccccccchHHHhhCCCEEEEeCeeECCEEEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 56677888899999888754 221111 1 22349999999998 3478999987644 356666666
Q ss_pred HHHHccc
Q 045155 154 IIAQCNI 160 (582)
Q Consensus 154 vk~~f~~ 160 (582)
+-.+...
T Consensus 133 la~~~ai 139 (165)
T 3o5y_A 133 LTDHLAV 139 (165)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666643
No 73
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=37.25 E-value=1e+02 Score=27.91 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=35.4
Q ss_pred CceEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEEeec---CCEEEEEEEEE
Q 045155 466 GNEFFIKVFC-EHKPGGFVRLMEALNSLGLEVTNANVTSR---TGLVSNVFNVK 515 (582)
Q Consensus 466 g~ev~IkI~C-~kr~glL~~Im~aLeeLgLdVvsAnvSt~---~g~vl~tf~vK 515 (582)
.+.+.|.|.. ++++|.+.+|+.+|.+.|+.|.-...+.. .+....+|.+.
T Consensus 14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 5567777765 66899999999999999998877654432 23444455554
No 74
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=36.50 E-value=1e+02 Score=24.89 Aligned_cols=60 Identities=17% Similarity=0.097 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhC----CCeEEEEEEeecCCEEEEEEEEEeCCCcc-cCHHHHHHHHHHHHhCCch
Q 045155 481 GFVRLMEALNSL----GLEVTNANVTSRTGLVSNVFNVKKRDNEM-VQADHVRDSLLELTRNPAR 540 (582)
Q Consensus 481 lL~~Im~aLeeL----gLdVvsAnvSt~~g~vl~tf~vKv~d~~~-vsae~Ik~aL~~vir~~~~ 540 (582)
.+.+|.++|.+. -.+|.+..+-..+...+.++++.+.+... ..+.++.+++.+.+++.|+
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~ 75 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFP 75 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCC
Confidence 355666677654 57899998888888888899999976533 4567888888888876664
No 75
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=35.67 E-value=77 Score=28.74 Aligned_cols=49 Identities=24% Similarity=0.246 Sum_probs=34.6
Q ss_pred CceEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEEeec-CCEEEEEEEE
Q 045155 466 GNEFFIKVFC-EHKPGGFVRLMEALNSLGLEVTNANVTSR-TGLVSNVFNV 514 (582)
Q Consensus 466 g~ev~IkI~C-~kr~glL~~Im~aLeeLgLdVvsAnvSt~-~g~vl~tf~v 514 (582)
.+...|.|.. +.++|.+.+|+++|.+.|+.|.....+.. ++....+|.+
T Consensus 23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v 73 (167)
T 2re1_A 23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTV 73 (167)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEE
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEE
Confidence 4567888874 78999999999999999999988765422 3433334443
No 76
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=34.63 E-value=72 Score=27.16 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 045155 340 RKKLNDRLYALRALVPIITKLDRATILVDAIEYVKQLQKQEKELKEELE 388 (582)
Q Consensus 340 R~~in~~~~~LrsLvP~~~K~dKasiL~~aI~YIk~Lq~~v~~L~~~~~ 388 (582)
|++..+.|..|.+.+ .-..+.|=+||..|+++|+.|++.+-
T Consensus 47 r~kFee~fe~l~s~l--------~~f~e~a~e~vp~L~~~i~vle~~~~ 87 (94)
T 3fx7_A 47 RDKFSEVLDNLKSTF--------NEFDEAAQEQIAWLKERIRVLEEDYL 87 (94)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHhhHHHhHHHHHHHHHhHHHHH
Confidence 445555555555544 12356788999999999999998764
No 77
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=33.86 E-value=1.1e+02 Score=28.40 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=41.4
Q ss_pred CceEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEeecCCEEEEEEEEEeCCCcccCHHHHHHHHHHHHh
Q 045155 466 GNEFFIKVFCE---HKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTR 536 (582)
Q Consensus 466 g~ev~IkI~C~---kr~glL~~Im~aLeeLgLdVvsAnvSt~~g~vl~tf~vKv~d~~~vsae~Ik~aL~~vir 536 (582)
.+-..|.|... ..||++.+++++|.+.++.|.-.+ +..-.+. +.+.- -+.+...++|++.+.
T Consensus 94 ~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei~Is--~vV~~-----~d~~~Av~aLH~~f~ 158 (181)
T 3s1t_A 94 DHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIRIS--VLCRD-----TELDKAVVALHEAFG 158 (181)
T ss_dssp SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEE--EEEEG-----GGHHHHHHHHHHHHT
T ss_pred CCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cCCCEEE--EEEeH-----HHHHHHHHHHHHHHc
Confidence 45667777653 589999999999999999988877 2232222 22221 345556667777664
No 78
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=33.79 E-value=1.5e+02 Score=25.77 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=42.1
Q ss_pred CCcceeee----eccCCceeeeccCCc----ch---HHHh-hcCCeEEEEee-----CCcEEeeccccccc---CChHHH
Q 045155 92 DSGIYAQS----LISNQPRWLNFSNSA----DL---EVME-ETLWTRVLIPI-----MGGLIELFATKEVS---EDPHVI 151 (582)
Q Consensus 92 g~G~~G~~----~~sg~~~Wi~~~~~~----~~---~~~~-~gIqTiv~iPv-----~~GVvELGS~~~i~---Ed~~~v 151 (582)
++|+.|.+ +.+|++..+ .+.+ .+ ..+. .|++..+|||+ .-|||.+-+...-. +|..++
T Consensus 77 ~~~~~g~v~~~~~~~~~~~~i--~d~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~~~l~G~l~~~~~~~~~~~~~e~~~l 154 (172)
T 2k2n_A 77 EAQSRSISQPESWGLSARVPL--GEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVV 154 (172)
T ss_dssp GGCCCCCSCCCSCCCSSCCCC--CSSSSCCCCHHHHHHHHTTTCSEEEECCCSCSSCCCEEEEEEECSCCCCCHHHHHHH
T ss_pred cccccccccccccccCCceec--cchhhcCCCHHHHHHHHhcCCeEEEEEEEEECCEEEEEEEEEeCCCCCCCHHHHHHH
Confidence 46777765 899999999 5532 11 2233 39999999998 24899888764433 334455
Q ss_pred HHHHHHcc
Q 045155 152 DFIIAQCN 159 (582)
Q Consensus 152 ~~vk~~f~ 159 (582)
+.+-.+++
T Consensus 155 ~~la~~~a 162 (172)
T 2k2n_A 155 QLLADQVS 162 (172)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444443
No 79
>3nk4_C ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_C*
Probab=31.85 E-value=16 Score=24.05 Aligned_cols=9 Identities=67% Similarity=1.158 Sum_probs=4.1
Q ss_pred CcCcccCCC
Q 045155 573 STHHHHLHH 581 (582)
Q Consensus 573 ~~~~~~~~~ 581 (582)
|.+|||.||
T Consensus 22 sadhhhhhh 30 (30)
T 3nk4_C 22 SADHHHHHH 30 (30)
T ss_dssp CSCTTCCCC
T ss_pred cccccccCC
Confidence 344444444
No 80
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=30.58 E-value=35 Score=26.47 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 045155 371 EYVKQLQKQEKELKEELEENSD 392 (582)
Q Consensus 371 ~YIk~Lq~~v~~L~~~~~~l~~ 392 (582)
.||..|+++|+.|+..+..+..
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999888754
No 81
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=30.07 E-value=1.7e+02 Score=26.67 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=29.3
Q ss_pred CceEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEEee
Q 045155 466 GNEFFIKVF-CEHKPGGFVRLMEALNSLGLEVTNANVTS 503 (582)
Q Consensus 466 g~ev~IkI~-C~kr~glL~~Im~aLeeLgLdVvsAnvSt 503 (582)
.+.+.|.|. -++++|.+.+|++.|.+.++.|.-...++
T Consensus 13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~ 51 (178)
T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNV 51 (178)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCC
Confidence 566778774 47789999999999999996666554443
No 82
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=28.97 E-value=1.5e+02 Score=26.73 Aligned_cols=35 Identities=9% Similarity=0.118 Sum_probs=29.5
Q ss_pred CceEEEEEEcCC---CCChHHHHHHHHHhCCCeEEEEE
Q 045155 466 GNEFFIKVFCEH---KPGGFVRLMEALNSLGLEVTNAN 500 (582)
Q Consensus 466 g~ev~IkI~C~k---r~glL~~Im~aLeeLgLdVvsAn 500 (582)
.+-..|.|.... ++|.+.+++++|.+.|+.|...+
T Consensus 101 ~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 101 DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 456778887765 89999999999999999998855
No 83
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=28.43 E-value=1.1e+02 Score=25.82 Aligned_cols=60 Identities=3% Similarity=-0.034 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhCC--CeEEEEEEeecCCEEEEEEEEEeCCCcc-cCHHHHHHHHHHHHhCCch
Q 045155 481 GFVRLMEALNSLG--LEVTNANVTSRTGLVSNVFNVKKRDNEM-VQADHVRDSLLELTRNPAR 540 (582)
Q Consensus 481 lL~~Im~aLeeLg--LdVvsAnvSt~~g~vl~tf~vKv~d~~~-vsae~Ik~aL~~vir~~~~ 540 (582)
.+.+|.++|.+.. .+|....+-..+..++.++++.+.+.-. ..+.+|..++.+.|++.|+
T Consensus 11 ~~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~ 73 (107)
T 2zzt_A 11 MYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRD 73 (107)
T ss_dssp HHHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4566777777664 6788888888888888899999976533 4566788888888877665
No 84
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=28.04 E-value=2.6e+02 Score=25.71 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=35.2
Q ss_pred CceEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEEeec---CCEEEEEEEEE
Q 045155 466 GNEFFIKVFC-EHKPGGFVRLMEALNSLGLEVTNANVTSR---TGLVSNVFNVK 515 (582)
Q Consensus 466 g~ev~IkI~C-~kr~glL~~Im~aLeeLgLdVvsAnvSt~---~g~vl~tf~vK 515 (582)
.+.+.|+|.. +.++|.+.+|+.+|.+.++.|.-..-+.. .+....+|.+.
T Consensus 14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~ 67 (181)
T 3s1t_A 14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 67 (181)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe
Confidence 4566777653 56899999999999999999877653322 45544555554
No 85
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.99 E-value=72 Score=22.66 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=25.8
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045155 360 LDRATILVDAIEYVKQLQKQEKELKEELEEN 390 (582)
Q Consensus 360 ~dKasiL~~aI~YIk~Lq~~v~~L~~~~~~l 390 (582)
+..+..|+++=+-|..|+.+++.|++++..|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345679999999999999999999988653
No 86
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=25.06 E-value=2.8e+02 Score=28.92 Aligned_cols=64 Identities=17% Similarity=0.250 Sum_probs=43.0
Q ss_pred CceEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEEeec---CCEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 045155 466 GNEFFIKVF-CEHKPGGFVRLMEALNSLGLEVTNANVTSR---TGLVSNVFNVKKRDNEMVQADHVRDSLLEL 534 (582)
Q Consensus 466 g~ev~IkI~-C~kr~glL~~Im~aLeeLgLdVvsAnvSt~---~g~vl~tf~vKv~d~~~vsae~Ik~aL~~v 534 (582)
.+.+.|.|. .+.++|.+.+|+++|.+.++.|.....++. .+....+|.+.- -..+...+.|.++
T Consensus 262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~-----~~~~~a~~~l~~~ 329 (421)
T 3ab4_A 262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPR-----SDGRRAMEILKKL 329 (421)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEET-----TTHHHHHHHHHHH
T ss_pred CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEec-----hhHHHHHHHHHHH
Confidence 567888887 577899999999999999999887754333 344444554442 1334445555554
No 87
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=24.33 E-value=82 Score=22.53 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045155 366 LVDAIEYVKQLQKQEKELKEELEENS 391 (582)
Q Consensus 366 L~~aI~YIk~Lq~~v~~L~~~~~~l~ 391 (582)
+.+--+||++|+++..+|+.-++.+.
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 45667899999999988887666554
No 88
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=24.21 E-value=43 Score=32.02 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=37.0
Q ss_pred cCceEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEE--eec-CCEEEEEEEEE
Q 045155 465 NGNEFFIKVF-CEHKPGGFVRLMEALNSLGLEVTNANV--TSR-TGLVSNVFNVK 515 (582)
Q Consensus 465 ~g~ev~IkI~-C~kr~glL~~Im~aLeeLgLdVvsAnv--St~-~g~vl~tf~vK 515 (582)
..+.+.|.|. .+++||.+.+|+.+|.+.++.|--..- +.. ++....+|.+.
T Consensus 32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~ 86 (200)
T 4go7_X 32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 86 (200)
T ss_dssp ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEE
T ss_pred cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecc
Confidence 3567888875 477999999999999999988876643 332 34555667665
No 89
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.42 E-value=69 Score=26.58 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045155 366 LVDAIEYVKQLQKQEKELKEELEENS 391 (582)
Q Consensus 366 L~~aI~YIk~Lq~~v~~L~~~~~~l~ 391 (582)
+..||+-|.-||.++++|+.++..+.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999998877654
No 90
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=23.39 E-value=45 Score=25.56 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 045155 371 EYVKQLQKQEKELKEELEENSD 392 (582)
Q Consensus 371 ~YIk~Lq~~v~~L~~~~~~l~~ 392 (582)
.||..|+.+++.|+..+..|..
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888777653
No 91
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=22.24 E-value=3.4e+02 Score=23.37 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=40.1
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHhC---CCeEEEEEEeecCCEEEEEEEEEe
Q 045155 467 NEFFIKVFCEHKPGGFVRLMEALNSL---GLEVTNANVTSRTGLVSNVFNVKK 516 (582)
Q Consensus 467 ~ev~IkI~C~kr~glL~~Im~aLeeL---gLdVvsAnvSt~~g~vl~tf~vKv 516 (582)
..+.+||.....+++...|.++++.+ +.++ ..+-|+.|..+..++.+.+
T Consensus 35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v 86 (109)
T 1rwu_A 35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINA 86 (109)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECC
T ss_pred CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEE
Confidence 35777777778899999999999988 7777 6688888888888888775
No 92
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.29 E-value=67 Score=24.44 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 045155 371 EYVKQLQKQEKELKEELEENSD 392 (582)
Q Consensus 371 ~YIk~Lq~~v~~L~~~~~~l~~ 392 (582)
.||..|+.+|..|+.+...|..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~ 43 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIE 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888888776653
No 93
>3oka_C N-terminal His-affinity TAG; GT-B fold, alpha-mannosyltransferase, GDP-MAN binding, trans; HET: GDD; 2.20A {Escherichia coli}
Probab=20.28 E-value=43 Score=20.37 Aligned_cols=11 Identities=55% Similarity=0.770 Sum_probs=4.8
Q ss_pred ccccCCCCcCc
Q 045155 566 HLHSHHMSTHH 576 (582)
Q Consensus 566 ~~~~~~~~~~~ 576 (582)
|-|.||.|.|+
T Consensus 7 hhhhhhssghi 17 (21)
T 3oka_C 7 HHHHHHSSGHI 17 (26)
T ss_pred ccccccccccc
Confidence 33444444444
Done!