Query 045156
Match_columns 319
No_of_seqs 141 out of 184
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 10:24:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11443 DUF2828: Domain of un 100.0 1E-107 3E-112 825.0 31.8 288 1-308 243-534 (534)
2 COG2425 Uncharacterized protei 99.2 2.8E-10 6E-15 114.3 12.8 133 81-227 254-392 (437)
3 cd01462 VWA_YIEM_type VWA YIEM 99.1 9.9E-10 2.2E-14 93.1 12.5 102 101-206 2-105 (152)
4 cd01461 vWA_interalpha_trypsin 99.1 8.4E-10 1.8E-14 94.0 10.7 103 100-207 3-111 (171)
5 PRK10997 yieM hypothetical pro 99.1 7.9E-10 1.7E-14 112.6 11.5 107 98-209 322-430 (487)
6 cd01465 vWA_subgroup VWA subgr 99.0 1.2E-08 2.7E-13 86.9 13.9 106 101-209 2-110 (170)
7 cd01463 vWA_VGCC_like VWA Volt 98.9 1.1E-08 2.3E-13 90.6 11.8 108 99-207 13-135 (190)
8 PF05762 VWA_CoxE: VWA domain 98.9 5.3E-09 1.2E-13 96.0 8.4 99 100-206 58-160 (222)
9 PF13768 VWA_3: von Willebrand 98.9 6.7E-09 1.5E-13 88.3 8.1 102 101-208 2-109 (155)
10 cd01451 vWA_Magnesium_chelatas 98.9 7E-08 1.5E-12 84.7 14.1 129 102-232 3-134 (178)
11 cd01464 vWA_subfamily VWA subf 98.8 5.2E-08 1.1E-12 85.1 10.0 104 101-207 5-119 (176)
12 cd01470 vWA_complement_factors 98.7 8.8E-08 1.9E-12 85.1 11.2 109 101-209 2-126 (198)
13 cd01482 vWA_collagen_alphaI-XI 98.7 2.7E-07 5.8E-12 79.7 13.8 123 101-232 2-132 (164)
14 cd01450 vWFA_subfamily_ECM Von 98.7 2.8E-07 6E-12 76.9 13.4 126 101-232 2-134 (161)
15 cd01454 vWA_norD_type norD typ 98.7 4.5E-07 9.8E-12 78.9 14.3 106 101-210 2-118 (174)
16 cd00198 vWFA Von Willebrand fa 98.7 6.7E-07 1.4E-11 72.8 14.0 133 101-245 2-141 (161)
17 cd01480 vWA_collagen_alpha_1-V 98.7 4.9E-07 1.1E-11 80.0 14.2 126 101-232 4-142 (186)
18 cd01474 vWA_ATR ATR (Anthrax T 98.7 1.6E-07 3.5E-12 82.8 10.9 108 100-207 5-115 (185)
19 cd01456 vWA_ywmD_type VWA ywmD 98.7 1.7E-07 3.6E-12 84.0 10.9 106 98-209 19-148 (206)
20 TIGR03788 marine_srt_targ mari 98.6 1.6E-07 3.5E-12 97.4 11.1 105 99-207 271-381 (596)
21 cd01472 vWA_collagen von Wille 98.6 4.7E-07 1E-11 77.8 11.7 105 101-206 2-114 (164)
22 cd01466 vWA_C3HC4_type VWA C3H 98.6 3.5E-07 7.6E-12 78.7 10.8 104 101-207 2-110 (155)
23 TIGR02031 BchD-ChlD magnesium 98.5 1.4E-06 3E-11 91.0 14.4 132 99-232 407-550 (589)
24 smart00327 VWA von Willebrand 98.5 1.4E-06 3.1E-11 73.3 11.9 132 101-244 3-143 (177)
25 cd01471 vWA_micronemal_protein 98.5 1.7E-06 3.7E-11 75.8 11.6 108 101-208 2-121 (186)
26 PRK13406 bchD magnesium chelat 98.5 3.1E-06 6.7E-11 88.4 15.3 133 98-232 400-539 (584)
27 PRK13685 hypothetical protein; 98.5 1.8E-05 3.9E-10 76.5 19.3 166 99-275 88-265 (326)
28 PF13519 VWA_2: von Willebrand 98.5 1.8E-06 4E-11 72.3 10.6 127 101-246 1-137 (172)
29 cd01467 vWA_BatA_type VWA BatA 98.4 6.1E-06 1.3E-10 71.4 12.7 155 100-275 3-166 (180)
30 cd01476 VWA_integrin_invertebr 98.4 6E-06 1.3E-10 70.4 12.2 108 101-208 2-116 (163)
31 COG1240 ChlD Mg-chelatase subu 98.4 1.1E-05 2.4E-10 76.5 14.7 134 99-232 78-214 (261)
32 TIGR02442 Cob-chelat-sub cobal 98.3 1.2E-05 2.6E-10 84.6 16.0 139 93-232 459-602 (633)
33 PF00092 VWA: von Willebrand f 98.3 4.5E-06 9.7E-11 70.9 10.5 108 101-209 1-117 (178)
34 PF09967 DUF2201: VWA-like dom 98.3 4.8E-06 1E-10 70.6 8.8 94 103-209 2-96 (126)
35 cd01469 vWA_integrins_alpha_su 98.3 1.4E-05 3.1E-10 70.2 12.1 125 101-232 2-134 (177)
36 cd01473 vWA_CTRP CTRP for CS 98.2 2.1E-05 4.6E-10 70.7 12.2 128 101-232 2-141 (192)
37 cd01475 vWA_Matrilin VWA_Matri 98.2 2.2E-05 4.9E-10 71.5 11.4 124 101-232 4-137 (224)
38 cd01457 vWA_ORF176_type VWA OR 98.1 2.2E-05 4.7E-10 70.2 10.6 106 100-208 3-120 (199)
39 TIGR03436 acidobact_VWFA VWFA- 98.1 4.7E-05 1E-09 71.9 12.9 124 100-232 54-196 (296)
40 cd01477 vWA_F09G8-8_type VWA F 98.1 0.00011 2.4E-09 66.4 14.1 128 99-232 19-163 (193)
41 TIGR00868 hCaCC calcium-activa 98.0 4.2E-05 9.1E-10 83.0 11.5 106 101-208 306-417 (863)
42 PTZ00441 sporozoite surface pr 98.0 5.8E-05 1.3E-09 78.6 11.9 127 99-232 42-180 (576)
43 PF10138 vWA-TerF-like: vWA fo 98.0 4.8E-05 1E-09 69.9 10.1 125 101-246 3-141 (200)
44 COG4245 TerY Uncharacterized p 97.8 0.00022 4.7E-09 65.2 10.2 103 101-207 5-119 (207)
45 cd01453 vWA_transcription_fact 97.7 0.0012 2.6E-08 59.0 13.7 126 98-232 2-138 (183)
46 cd01460 vWA_midasin VWA_Midasi 97.6 0.0018 3.8E-08 61.9 13.6 122 98-232 59-196 (266)
47 cd01481 vWA_collagen_alpha3-VI 97.5 0.0013 2.8E-08 57.7 11.7 124 101-232 2-135 (165)
48 COG3552 CoxE Protein containin 97.5 0.00017 3.7E-09 71.5 5.7 99 99-205 218-321 (395)
49 cd01458 vWA_ku Ku70/Ku80 N-ter 97.1 0.007 1.5E-07 54.9 11.8 130 101-232 3-164 (218)
50 cd01452 VWA_26S_proteasome_sub 97.0 0.019 4.2E-07 52.2 13.3 130 99-240 3-144 (187)
51 KOG2353 L-type voltage-depende 96.8 0.0068 1.5E-07 67.7 10.0 109 96-205 222-345 (1104)
52 KOG4465 Uncharacterized conser 96.6 0.016 3.4E-07 58.0 10.0 157 98-274 426-592 (598)
53 PF11775 CobT_C: Cobalamin bio 96.5 0.012 2.6E-07 54.9 8.5 46 100-145 13-59 (219)
54 COG3864 Uncharacterized protei 96.4 0.025 5.5E-07 55.6 9.9 105 99-246 261-372 (396)
55 cd01455 vWA_F11C1-5a_type Von 95.3 0.1 2.2E-06 47.8 8.8 102 101-209 2-125 (191)
56 PF04285 DUF444: Protein of un 95.3 0.069 1.5E-06 54.3 8.3 100 99-208 244-348 (421)
57 COG4867 Uncharacterized protei 94.6 0.061 1.3E-06 54.9 5.6 95 100-208 464-565 (652)
58 PRK05325 hypothetical protein; 94.5 0.11 2.5E-06 52.4 7.5 102 99-209 220-325 (401)
59 TIGR02877 spore_yhbH sporulati 94.3 0.13 2.9E-06 51.4 7.2 101 99-208 200-304 (371)
60 TIGR01651 CobT cobaltochelatas 94.2 0.23 5E-06 52.5 9.0 47 99-145 392-439 (600)
61 cd01459 vWA_copine_like VWA Co 92.3 1.5 3.2E-05 41.8 10.6 118 88-209 21-170 (254)
62 COG2304 Uncharacterized protei 90.7 2.5 5.5E-05 40.8 10.6 108 99-208 37-147 (399)
63 KOG3768 DEAD box RNA helicase 86.6 2.4 5.3E-05 45.2 7.7 101 103-205 5-132 (888)
64 COG2718 Uncharacterized conser 84.5 3.7 8E-05 41.7 7.6 99 99-207 244-347 (423)
65 smart00187 INB Integrin beta s 84.4 3.9 8.6E-05 41.8 7.9 163 101-275 101-334 (423)
66 COG4547 CobT Cobalamin biosynt 79.2 1.6 3.5E-05 45.3 3.0 43 102-144 416-459 (620)
67 PF03731 Ku_N: Ku70/Ku80 N-ter 76.3 42 0.00091 30.1 11.1 126 102-232 2-166 (224)
68 PF07002 Copine: Copine; Inte 74.5 6 0.00013 34.6 4.9 55 154-209 67-122 (146)
69 COG4548 NorD Nitric oxide redu 68.2 19 0.00041 38.3 7.5 154 101-265 448-622 (637)
70 cd01468 trunk_domain trunk dom 63.9 1E+02 0.0022 28.3 11.0 52 101-152 5-59 (239)
71 PF04951 Peptidase_M55: D-amin 62.3 19 0.00042 34.6 6.0 71 198-273 2-89 (265)
72 PF00362 Integrin_beta: Integr 56.6 15 0.00033 37.5 4.5 107 103-211 106-248 (426)
73 PF06707 DUF1194: Protein of u 53.1 48 0.001 30.9 6.7 121 103-232 7-148 (205)
74 PF14581 SseB_C: SseB protein 49.0 1.1E+02 0.0025 24.5 7.7 84 53-144 7-90 (108)
75 COG1721 Uncharacterized conser 47.4 1.3E+02 0.0028 30.2 9.4 100 80-180 199-315 (416)
76 PRK10929 putative mechanosensi 43.6 54 0.0012 37.7 6.5 68 166-236 997-1077(1109)
77 cd04657 Piwi_ago-like Piwi_ago 40.2 30 0.00065 35.0 3.6 64 173-246 250-319 (426)
78 PLN03202 protein argonaute; Pr 39.9 31 0.00066 38.6 3.9 92 172-273 688-793 (900)
79 COG0426 FpaA Uncharacterized f 37.5 4.7E+02 0.01 26.8 11.9 96 110-233 254-360 (388)
80 PF02171 Piwi: Piwi domain; I 37.1 62 0.0014 30.4 5.0 65 173-246 127-197 (302)
81 KOG1226 Integrin beta subunit 36.5 68 0.0015 35.4 5.6 106 102-210 135-276 (783)
82 TIGR00578 ku70 ATP-dependent D 36.3 2.7E+02 0.0058 29.7 10.0 127 101-232 12-175 (584)
83 KOG2884 26S proteasome regulat 35.1 3.5E+02 0.0076 26.0 9.4 82 99-180 3-93 (259)
84 cd08769 DAP_dppA_2 Peptidase M 33.9 1.9E+02 0.004 28.1 7.7 74 198-276 2-92 (270)
85 COG0056 AtpA F0F1-type ATP syn 33.0 1.8E+02 0.0039 30.6 7.8 114 85-208 204-343 (504)
86 cd06155 eu_AANH_C_1 A group of 32.8 1.1E+02 0.0023 24.4 5.1 33 173-205 27-59 (101)
87 cd08770 DAP_dppA_3 Peptidase M 32.6 1.8E+02 0.0039 28.1 7.4 72 198-273 2-90 (263)
88 KOG3752 Ribonuclease H [Replic 32.6 1.4E+02 0.003 30.3 6.8 90 102-232 213-305 (371)
89 cd08663 DAP_dppA_1 Peptidase M 32.5 1.3E+02 0.0028 29.2 6.3 71 198-273 2-89 (266)
90 PRK11281 hypothetical protein; 30.5 92 0.002 35.9 5.7 71 166-239 1000-1085(1113)
91 COG5271 MDN1 AAA ATPase contai 28.6 2.8E+02 0.0061 34.9 9.0 129 99-246 4392-4535(4600)
92 smart00467 GS GS motif. Aa app 27.6 45 0.00098 22.0 1.6 17 108-124 11-27 (30)
93 PF11019 DUF2608: Protein of u 26.6 1.6E+02 0.0036 27.7 5.9 129 79-241 79-211 (252)
94 PF01882 DUF58: Protein of unk 25.9 1.3E+02 0.0029 22.8 4.3 49 79-127 14-73 (86)
95 cd02826 Piwi-like Piwi-like: P 25.5 69 0.0015 31.9 3.3 65 172-246 221-291 (393)
96 PRK10334 mechanosensitive chan 24.9 1.7E+02 0.0036 28.3 5.7 69 167-238 191-273 (286)
97 PRK07394 hypothetical protein; 24.1 4.2E+02 0.0092 26.2 8.5 48 84-131 63-112 (342)
98 cd04658 Piwi_piwi-like_Euk Piw 23.6 1E+02 0.0023 31.1 4.3 66 171-246 276-347 (448)
99 COG4003 Uncharacterized protei 23.4 94 0.002 25.5 3.1 37 261-300 30-66 (98)
100 cd00006 PTS_IIA_man PTS_IIA, P 22.8 4.3E+02 0.0093 21.6 8.9 66 97-185 55-120 (122)
101 PF04811 Sec23_trunk: Sec23/Se 21.5 94 0.002 28.5 3.2 52 101-152 5-59 (243)
102 PF12146 Hydrolase_4: Putative 20.9 1.9E+02 0.0041 22.2 4.4 48 192-250 11-58 (79)
No 1
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=100.00 E-value=1.3e-107 Score=825.02 Aligned_cols=288 Identities=57% Similarity=0.986 Sum_probs=276.7
Q ss_pred CCcCccccccccCCCCCCCCchHHHHHHHhHHHHhhhchHHHHHHHHHHhhcccccccCCCChHHHHHHhhhcCchhhhH
Q 045156 1 ALELPEVYMTANKWDLLPYRKVASLAMKVYTKTFMKHDGPRFIKYLTDVKVGKAKISTGALLPHGIIKSVNHETEFALFQ 80 (319)
Q Consensus 1 ~L~ivE~~ms~~~w~~i~Y~rvpS~Am~~y~~aF~k~D~erf~~yl~~v~~G~aki~~~~l~P~eiv~~~~~~~~~~~~~ 80 (319)
+|+|||++||+++|++|+|+||||+||++|++||.|||++||++||++|++|++||||++|||||||++++.++. ..+.
T Consensus 243 ~l~ivE~~ms~~~w~~i~Y~rVpS~Am~~y~~aF~k~D~erf~~yl~~v~~G~~ki~~~~L~P~eiv~~~~~~~~-~~~~ 321 (534)
T PF11443_consen 243 ALEIVERYMSANDWDEIDYSRVPSVAMKKYKKAFLKHDEERFQEYLEDVKKGKAKINAGTLLPHEIVASALKGDS-DDSE 321 (534)
T ss_pred hhcccHHHhhhccccCCCccccccHHHHHHHHHHHhhCHHHHHHHHHHHhcCcceecCCCCCHHHHHHHHhcccc-chhH
Confidence 589999999999999999999999999999999999999999999999999999999999999999999998753 1245
Q ss_pred HHHHHHHHHHHHHhhcCCCcceEEEEeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEecCCCHHHHH
Q 045156 81 VAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKT 160 (319)
Q Consensus 81 ~~e~qW~~lv~~l~~~g~~~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~g~~l~ekv 160 (319)
++|+||++|||++++.|+++|||+||||||||+|+||+||||||||+||++++||+|+|||||++|++|+|+|.+|.|++
T Consensus 322 ~~e~qWk~lv~~~~~~g~l~n~iav~DvSGSM~~~pm~vaiaLgll~ae~~~~pf~~~~ITFs~~P~~~~i~g~~l~ekv 401 (534)
T PF11443_consen 322 VAELQWKTLVDYLKDSGSLENCIAVCDVSGSMSGPPMDVAIALGLLIAELNKGPFKGRFITFSENPQLHKIKGDTLREKV 401 (534)
T ss_pred HHHHHHHHHHHHHhccCCccceEEEEecCCccCccHHHHHHHHHHHHHHhcccccCCeEEeecCCceEEEecCCCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccC---CCCcchHHHHHHHHHhcCCCCCCCe
Q 045156 161 RFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASL---HPWETDYQAIVRKYTEKGYGSAVPE 237 (319)
Q Consensus 161 ~~i~~~~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~---~~w~t~~e~i~~ky~~~Gy~~~~P~ 237 (319)
+++++++||+||||++||++||++|++++|+||||||+||||||||||+|++ +.|+|+||.|+++|+++||+ +|+
T Consensus 402 ~~~~~~~wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD~a~~~~~~~w~T~~e~i~~~f~~aGY~--~P~ 479 (534)
T PF11443_consen 402 RFIRRMDWGMNTNFQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEFDQASNSSDRPWETNFEAIKRKFEEAGYE--LPE 479 (534)
T ss_pred HHHHhCCcccCCcHHHHHHHHHHHHHHcCCChHHCCceEEEEeccccccccccccCccccHHHHHHHHHHHhCCC--CCc
Confidence 9999999999999999999999999999999999999999999999999988 56899999999999999999 999
Q ss_pred EEEEeCCCC-CCCCcccCCCCeEEEeccCHHHHHHHHhCCCccchhhHhhhhhhcccccCCCHHHHHHHhhC
Q 045156 238 IIFWNLRHS-KSTPVPEGQEGVALVSGFSKILIKLFLENEGVIDQEQVVEAGITENKKKQIDPVQVMEAAIS 308 (319)
Q Consensus 238 ivfWNl~~~-~~~Pv~~~~~gv~LVSG~S~~i~k~~l~~~g~~~~~~~~~~~~~~~~~~~~~P~~~m~~ai~ 308 (319)
||||||+++ +++||+++++||+|||||||+|||+||+++| +.+||+++|++||+
T Consensus 480 iVFWNl~~~~~~~PV~~~~~GvaLVSGfS~~llk~~l~~~~-----------------~~~~P~~~m~~ai~ 534 (534)
T PF11443_consen 480 IVFWNLRGRSSNKPVTANEKGVALVSGFSPNLLKMFLEGGG-----------------KEMDPYSVMLKAIS 534 (534)
T ss_pred eEEeecCCCCCCCCceeCCCCeEEEecCCHHHHHHHHcCCC-----------------CCCCHHHHHHHHhC
Confidence 999999998 5599999999999999999999999999976 12499999999996
No 2
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.16 E-value=2.8e-10 Score=114.35 Aligned_cols=133 Identities=20% Similarity=0.175 Sum_probs=101.0
Q ss_pred HHHHHHHHHHH-HHhhcCCCcceEEEEeCCCCCCCChHHHHHHHHHHHhhhccCC-cccEEEEeCCCceEEEe--cC--C
Q 045156 81 VAELQWNRIVD-DLSKEGKLRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEP-WKGKLITFGEKPELHLV--EG--D 154 (319)
Q Consensus 81 ~~e~qW~~lv~-~l~~~g~~~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~-~~~~~ItFs~~p~~~~l--~g--~ 154 (319)
.....|+.|.. ++++++ -...|+++|.||||.|.|++.|.|.++-+.+++.-- ..+++|.|++ +++.+ .. .
T Consensus 254 y~kl~e~kLl~Yr~~gk~-~GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s--~~~~~el~~k~~ 330 (437)
T COG2425 254 YRKLVEKKLLTYRLQGKS-EGPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVILFDS--EVIEYELYEKKI 330 (437)
T ss_pred HHHhhhccchhhhhhcCC-CCCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceEEEEecc--cceeeeecCCcc
Confidence 34455665555 355544 478999999999999999999999998887777544 5669999999 55444 22 4
Q ss_pred CHHHHHHHhhcCCccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHH
Q 045156 155 DLKSKTRFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYT 227 (319)
Q Consensus 155 ~l~ekv~~i~~~~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~ 227 (319)
++.+.++++...--|| |||.+++..+++.++..++-+ -.++||||++++-. ..|...+.+.+
T Consensus 331 ~~~e~i~fL~~~f~GG-TD~~~~l~~al~~~k~~~~~~----adiv~ITDg~~~~~------~~~~~~v~e~~ 392 (437)
T COG2425 331 DIEELIEFLSYVFGGG-TDITKALRSALEDLKSRELFK----ADIVVITDGEDERL------DDFLRKVKELK 392 (437)
T ss_pred CHHHHHHHHhhhcCCC-CChHHHHHHHHHHhhcccccC----CCEEEEeccHhhhh------hHHHHHHHHHH
Confidence 8888888777766565 999999999999999888877 45999999998763 24444554444
No 3
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.12 E-value=9.9e-10 Score=93.12 Aligned_cols=102 Identities=25% Similarity=0.325 Sum_probs=78.8
Q ss_pred ceEEEEeCCCCCCCChHHHHHHHHHHHhhhccC-CcccEEEEeCCCceEEEecC-CCHHHHHHHhhcCCccccccHHHHH
Q 045156 101 NCKAICDVSGSVHGTPLEVSVALGLLVSELSEE-PWKGKLITFGEKPELHLVEG-DDLKSKTRFVSNVNWDMNTDFQEVF 178 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~-~~~~~~ItFs~~p~~~~l~g-~~l~ekv~~i~~~~~g~nTnl~~vf 178 (319)
+.++++|+||||.+.+.+.|..++..+.+.... --+-.+|+|++......+++ .++.+.++.+.....|++||+..+|
T Consensus 2 ~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~~~~~~~~~~~~~~~~~~l~~~~~~ggT~l~~al 81 (152)
T cd01462 2 PVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQTKIVDKTDDLEEPVEFLSGVQLGGGTDINKAL 81 (152)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCceEEecCCcccHHHHHHHHhcCCCCCCcCHHHHH
Confidence 468899999999998888888887777554432 13558999999966555544 5677777777778889999999999
Q ss_pred HHHHHHHHhCCCChhhccceEEEEecCc
Q 045156 179 DLILEVAVNGNLKPEQMIKRLFVFSDME 206 (319)
Q Consensus 179 ~~IL~~A~k~~l~~e~mpk~v~V~SDmq 206 (319)
..+++...+.+. -...|+||||++
T Consensus 82 ~~a~~~l~~~~~----~~~~ivliTDG~ 105 (152)
T cd01462 82 RYALELIERRDP----RKADIVLITDGY 105 (152)
T ss_pred HHHHHHHHhcCC----CCceEEEECCCC
Confidence 999888665432 246899999996
No 4
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.09 E-value=8.4e-10 Score=94.01 Aligned_cols=103 Identities=18% Similarity=0.267 Sum_probs=78.1
Q ss_pred cceEEEEeCCCCCCCChHHHHH-HHHHHHhhhccCCcccEEEEeCCCceEEEe-----cCCCHHHHHHHhhcCCcccccc
Q 045156 100 RNCKAICDVSGSVHGTPLEVSV-ALGLLVSELSEEPWKGKLITFGEKPELHLV-----EGDDLKSKTRFVSNVNWDMNTD 173 (319)
Q Consensus 100 ~~~I~v~DvSGSM~g~p~dvai-aL~lllae~~~~~~~~~~ItFs~~p~~~~l-----~g~~l~ekv~~i~~~~~g~nTn 173 (319)
.++++++|+||||.|.+++.+. ++..++..++.+ -+-.+++|++++....- ...++.+.++.+.+...|++||
T Consensus 3 ~~v~~vlD~S~SM~~~~~~~~~~al~~~l~~l~~~-~~~~l~~Fs~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~T~ 81 (171)
T cd01461 3 KEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPG-DYFNIIGFSDTVEEFSPSSVSATAENVAAAIEYVNRLQALGGTN 81 (171)
T ss_pred ceEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCC-CEEEEEEeCCCceeecCcceeCCHHHHHHHHHHHHhcCCCCCcC
Confidence 4688999999999999888766 555566777655 35689999999775421 1235566677777787799999
Q ss_pred HHHHHHHHHHHHHhCCCChhhccceEEEEecCcc
Q 045156 174 FQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEF 207 (319)
Q Consensus 174 l~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqF 207 (319)
+..+++.+++.... ++.-++.|++|||++.
T Consensus 82 l~~al~~a~~~l~~----~~~~~~~iillTDG~~ 111 (171)
T cd01461 82 MNDALEAALELLNS----SPGSVPQIILLTDGEV 111 (171)
T ss_pred HHHHHHHHHHhhcc----CCCCccEEEEEeCCCC
Confidence 99999998887654 1345789999999973
No 5
>PRK10997 yieM hypothetical protein; Provisional
Probab=99.07 E-value=7.9e-10 Score=112.58 Aligned_cols=107 Identities=20% Similarity=0.221 Sum_probs=85.3
Q ss_pred CCcceEEEEeCCCCCCCChHHHHHHHHHHHhhhccCC-cccEEEEeCCCceEEEecC-CCHHHHHHHhhcCCccccccHH
Q 045156 98 KLRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEP-WKGKLITFGEKPELHLVEG-DDLKSKTRFVSNVNWDMNTDFQ 175 (319)
Q Consensus 98 ~~~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~-~~~~~ItFs~~p~~~~l~g-~~l~ekv~~i~~~~~g~nTnl~ 175 (319)
.-...|+++|+||||.|.+.+.|+++++.++.++... -++.+|.||+......+++ .++.+.++++.. .+||+||+.
T Consensus 322 ~kGpiII~VDtSGSM~G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~~l~~~~gl~~ll~fL~~-~f~GGTDl~ 400 (487)
T PRK10997 322 PRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTYELTGPDGLEQAIRFLSQ-SFRGGTDLA 400 (487)
T ss_pred CCCcEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceeeccCCccCHHHHHHHHHH-hcCCCCcHH
Confidence 3567899999999999999888888777776654322 5678999999877656654 688888887754 479999999
Q ss_pred HHHHHHHHHHHhCCCChhhccceEEEEecCcccc
Q 045156 176 EVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDE 209 (319)
Q Consensus 176 ~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~ 209 (319)
.+++.++....+...++.+ |+||||+..+.
T Consensus 401 ~aL~~al~~l~~~~~r~ad----IVVISDF~~~~ 430 (487)
T PRK10997 401 PCLRAIIEKMQGREWFDAD----AVVISDFIAQR 430 (487)
T ss_pred HHHHHHHHHHcccccCCce----EEEECCCCCCC
Confidence 9999999998877666655 99999997653
No 6
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.99 E-value=1.2e-08 Score=86.93 Aligned_cols=106 Identities=20% Similarity=0.170 Sum_probs=76.2
Q ss_pred ceEEEEeCCCCCCCChHHHHHHHH-HHHhhhccCCcccEEEEeCCCceEEEe--cCCCHHHHHHHhhcCCccccccHHHH
Q 045156 101 NCKAICDVSGSVHGTPLEVSVALG-LLVSELSEEPWKGKLITFGEKPELHLV--EGDDLKSKTRFVSNVNWDMNTDFQEV 177 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaiaL~-lllae~~~~~~~~~~ItFs~~p~~~~l--~g~~l~ekv~~i~~~~~g~nTnl~~v 177 (319)
|.++++|+||||.+.+++.+.... .++..+..+ -+-.+++|+++++...- .+.+...-.+.+.+..++++|++..+
T Consensus 2 ~~~~vlD~S~SM~~~~~~~~k~a~~~~~~~l~~~-~~v~li~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~T~~~~a 80 (170)
T cd01465 2 NLVFVIDRSGSMDGPKLPLVKSALKLLVDQLRPD-DRLAIVTYDGAAETVLPATPVRDKAAILAAIDRLTAGGSTAGGAG 80 (170)
T ss_pred cEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCC-CEEEEEEecCCccEEecCcccchHHHHHHHHHcCCCCCCCCHHHH
Confidence 578899999999998888887544 444655544 46789999999886432 22344333344667778999999999
Q ss_pred HHHHHHHHHhCCCChhhccceEEEEecCcccc
Q 045156 178 FDLILEVAVNGNLKPEQMIKRLFVFSDMEFDE 209 (319)
Q Consensus 178 f~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~ 209 (319)
+...++...+..-+. -+++||+|||++-+.
T Consensus 81 l~~a~~~~~~~~~~~--~~~~ivl~TDG~~~~ 110 (170)
T cd01465 81 IQLGYQEAQKHFVPG--GVNRILLATDGDFNV 110 (170)
T ss_pred HHHHHHHHHhhcCCC--CeeEEEEEeCCCCCC
Confidence 999988876543222 247899999998654
No 7
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.93 E-value=1.1e-08 Score=90.59 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=77.6
Q ss_pred CcceEEEEeCCCCCCCChHHHHHHHHHHH-hhhccCCcccEEEEeCCCceEEEec---------CCCHHHHHHHhhcCCc
Q 045156 99 LRNCKAICDVSGSVHGTPLEVSVALGLLV-SELSEEPWKGKLITFGEKPELHLVE---------GDDLKSKTRFVSNVNW 168 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~~~~~~~~ItFs~~p~~~~l~---------g~~l~ekv~~i~~~~~ 168 (319)
-.++++++|+||||.+.+++.+...+..+ ..++.+ -+-.+++|+++++.+.-. ..+...-.+.+.++..
T Consensus 13 p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~l~~~-d~v~lv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 91 (190)
T cd01463 13 PKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDN-DFFNIITFSNEVNPVVPCFNDTLVQATTSNKKVLKEALDMLEA 91 (190)
T ss_pred CceEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCC-CEEEEEEeCCCeeEEeeecccceEecCHHHHHHHHHHHhhCCC
Confidence 56789999999999999999887665555 555444 366889999998865211 1233344445667778
Q ss_pred cccccHHHHHHHHHHHHHhCCC-----ChhhccceEEEEecCcc
Q 045156 169 DMNTDFQEVFDLILEVAVNGNL-----KPEQMIKRLFVFSDMEF 207 (319)
Q Consensus 169 g~nTnl~~vf~~IL~~A~k~~l-----~~e~mpk~v~V~SDmqF 207 (319)
+++|++..++..+++...+++. ...+..+.||||||++=
T Consensus 92 ~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~ 135 (190)
T cd01463 92 KGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVP 135 (190)
T ss_pred CCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCC
Confidence 9999999999988877665211 12345788999999963
No 8
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=98.89 E-value=5.3e-09 Score=95.98 Aligned_cols=99 Identities=19% Similarity=0.245 Sum_probs=66.4
Q ss_pred cceEEEEeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEE--ecCCCHHHHHHHhh--cCCccccccHH
Q 045156 100 RNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHL--VEGDDLKSKTRFVS--NVNWDMNTDFQ 175 (319)
Q Consensus 100 ~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~--l~g~~l~ekv~~i~--~~~~g~nTnl~ 175 (319)
...|++|||||||.+-...+ |. +++.+...--+..++.|+....-+. +...+..+.+..+. ...|||+||+.
T Consensus 58 ~~lvvl~DvSGSM~~~s~~~---l~-~~~~l~~~~~~~~~f~F~~~l~~vT~~l~~~~~~~~l~~~~~~~~~~~GgTdi~ 133 (222)
T PF05762_consen 58 RRLVVLCDVSGSMAGYSEFM---LA-FLYALQRQFRRVRVFVFSTRLTEVTPLLRRRDPEEALARLSALVQSFGGGTDIG 133 (222)
T ss_pred ccEEEEEeCCCChHHHHHHH---HH-HHHHHHHhCCCEEEEEEeeehhhhhhhhccCCHHHHHHHHHhhccCCCCccHHH
Confidence 47899999999998743222 22 2222222212779999998644222 23346666666664 34699999999
Q ss_pred HHHHHHHHHHHhCCCChhhccceEEEEecCc
Q 045156 176 EVFDLILEVAVNGNLKPEQMIKRLFVFSDME 206 (319)
Q Consensus 176 ~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmq 206 (319)
.+|+..++......+++ ..|+|+||+.
T Consensus 134 ~aL~~~~~~~~~~~~~~----t~vvIiSDg~ 160 (222)
T PF05762_consen 134 QALREFLRQYARPDLRR----TTVVIISDGW 160 (222)
T ss_pred HHHHHHHHHhhcccccC----cEEEEEeccc
Confidence 99999998876555522 4699999984
No 9
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=98.88 E-value=6.7e-09 Score=88.30 Aligned_cols=102 Identities=16% Similarity=0.244 Sum_probs=79.1
Q ss_pred ceEEEEeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEe-----cCCCHHHHHHHhhcCCc-cccccH
Q 045156 101 NCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLV-----EGDDLKSKTRFVSNVNW-DMNTDF 174 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l-----~g~~l~ekv~~i~~~~~-g~nTnl 174 (319)
+.++++|+||||.|.+-.+.-+|-.++.+++++- +-.+|+|++++....- ...++.+..+.|++.+- +++||+
T Consensus 2 ~vvilvD~S~Sm~g~~~~~k~al~~~l~~L~~~d-~fnii~f~~~~~~~~~~~~~~~~~~~~~a~~~I~~~~~~~G~t~l 80 (155)
T PF13768_consen 2 DVVILVDTSGSMSGEKELVKDALRAILRSLPPGD-RFNIIAFGSSVRPLFPGLVPATEENRQEALQWIKSLEANSGGTDL 80 (155)
T ss_pred eEEEEEeCCCCCCCcHHHHHHHHHHHHHhCCCCC-EEEEEEeCCEeeEcchhHHHHhHHHHHHHHHHHHHhcccCCCccH
Confidence 5789999999999988555556667778888774 7789999998763321 23577777888888877 889999
Q ss_pred HHHHHHHHHHHHhCCCChhhccceEEEEecCccc
Q 045156 175 QEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFD 208 (319)
Q Consensus 175 ~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd 208 (319)
..+++.++... ....-+..|+++||+.++
T Consensus 81 ~~aL~~a~~~~-----~~~~~~~~IilltDG~~~ 109 (155)
T PF13768_consen 81 LAALRAALALL-----QRPGCVRAIILLTDGQPV 109 (155)
T ss_pred HHHHHHHHHhc-----ccCCCccEEEEEEeccCC
Confidence 99999888764 222348899999999884
No 10
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=98.86 E-value=7e-08 Score=84.68 Aligned_cols=129 Identities=17% Similarity=0.136 Sum_probs=83.8
Q ss_pred eEEEEeCCCCCCCC-hHHHHHHHHHHHhh-hccCCcccEEEEeCCC-ceEEEecCCCHHHHHHHhhcCCccccccHHHHH
Q 045156 102 CKAICDVSGSVHGT-PLEVSVALGLLVSE-LSEEPWKGKLITFGEK-PELHLVEGDDLKSKTRFVSNVNWDMNTDFQEVF 178 (319)
Q Consensus 102 ~I~v~DvSGSM~g~-p~dvaiaL~lllae-~~~~~~~~~~ItFs~~-p~~~~l~g~~l~ekv~~i~~~~~g~nTnl~~vf 178 (319)
.++++|+||||.+. +++.++..+..+.. ...+--+-.+|+|+++ +.++.-...+...-.+.+.....|+.|++..++
T Consensus 3 v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~~~~~~t~~~~~~~~~l~~l~~~G~T~l~~aL 82 (178)
T cd01451 3 VIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPTRSVELAKRRLARLPTGGGTPLAAGL 82 (178)
T ss_pred EEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEeCCCCCHHHHHHHHHhCCCCCCCcHHHHH
Confidence 46789999999975 89988877766643 2222246688999976 443322234444444556677789999999999
Q ss_pred HHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 179 DLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 179 ~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
...++...+.. +...-.+.||++||++-+... .+.......+.++.+++|..
T Consensus 83 ~~a~~~l~~~~-~~~~~~~~ivliTDG~~~~g~-~~~~~~~~~~~~~l~~~gi~ 134 (178)
T cd01451 83 LAAYELAAEQA-RDPGQRPLIVVITDGRANVGP-DPTADRALAAARKLRARGIS 134 (178)
T ss_pred HHHHHHHHHHh-cCCCCceEEEEECCCCCCCCC-CchhHHHHHHHHHHHhcCCc
Confidence 98888762211 112236889999999755421 12111214566778888876
No 11
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.76 E-value=5.2e-08 Score=85.07 Aligned_cols=104 Identities=23% Similarity=0.255 Sum_probs=70.0
Q ss_pred ceEEEEeCCCCCCCChHHHHHH-HHHHHhhhccCC-----cccEEEEeCCCceEEEecCCCHHHHHHHhhcCCccccccH
Q 045156 101 NCKAICDVSGSVHGTPLEVSVA-LGLLVSELSEEP-----WKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNWDMNTDF 174 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaia-L~lllae~~~~~-----~~~~~ItFs~~p~~~~l~g~~l~ekv~~i~~~~~g~nTnl 174 (319)
++++++|+||||.+.+++.+.. +..++..+...+ -+-.+|+|+++.+.+. +-..+.+. .......+++||+
T Consensus 5 ~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~-~l~~~~~~--~~~~l~~~GgT~l 81 (176)
T cd01464 5 PIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIV-PLTPLESF--QPPRLTASGGTSM 81 (176)
T ss_pred CEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEec-CCccHHhc--CCCcccCCCCCcH
Confidence 5788999999999988776654 444456665443 3568999999887632 22222211 1344567889999
Q ss_pred HHHHHHHHHHHHhCC-----CChhhccceEEEEecCcc
Q 045156 175 QEVFDLILEVAVNGN-----LKPEQMIKRLFVFSDMEF 207 (319)
Q Consensus 175 ~~vf~~IL~~A~k~~-----l~~e~mpk~v~V~SDmqF 207 (319)
..++..+++...... -.+...++.|+++||++-
T Consensus 82 ~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~ 119 (176)
T cd01464 82 GAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEP 119 (176)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCC
Confidence 999998887754321 112345678999999974
No 12
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=98.75 E-value=8.8e-08 Score=85.15 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=71.9
Q ss_pred ceEEEEeCCCCCCCChHHHHHHHHHHH-hhhccC--CcccEEEEeCCCceEEE-ec---CCCHHHHHHHhhcCC-----c
Q 045156 101 NCKAICDVSGSVHGTPLEVSVALGLLV-SELSEE--PWKGKLITFGEKPELHL-VE---GDDLKSKTRFVSNVN-----W 168 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~~--~~~~~~ItFs~~p~~~~-l~---g~~l~ekv~~i~~~~-----~ 168 (319)
|.++++|+||||.+.+++.+.....-+ ..+... --+..+|+|+++++.+. +. ..+..+-++.+.++. +
T Consensus 2 di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (198)
T cd01470 2 NIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRDFNSNDADDVIKRLEDFNYDDHGD 81 (198)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEecccCCCCCHHHHHHHHHhCCcccccC
Confidence 578899999999998888776655544 555432 25678999999998643 31 123333444444443 4
Q ss_pred cccccHHHHHHHHHHHHHhCCC----ChhhccceEEEEecCcccc
Q 045156 169 DMNTDFQEVFDLILEVAVNGNL----KPEQMIKRLFVFSDMEFDE 209 (319)
Q Consensus 169 g~nTnl~~vf~~IL~~A~k~~l----~~e~mpk~v~V~SDmqFd~ 209 (319)
+++||+..+++.+++.....+. .....++.||||||++-+.
T Consensus 82 ~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~ 126 (198)
T cd01470 82 KTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNM 126 (198)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCC
Confidence 6789999999887765321111 1123567899999998664
No 13
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.74 E-value=2.7e-07 Score=79.71 Aligned_cols=123 Identities=12% Similarity=0.100 Sum_probs=84.4
Q ss_pred ceEEEEeCCCCCCCChHHHHHHHHHHH-hhhcc--CCcccEEEEeCCCceEEEe-c-CCCHHHHHHHhhcCC-ccccccH
Q 045156 101 NCKAICDVSGSVHGTPLEVSVALGLLV-SELSE--EPWKGKLITFGEKPELHLV-E-GDDLKSKTRFVSNVN-WDMNTDF 174 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~--~~~~~~~ItFs~~p~~~~l-~-g~~l~ekv~~i~~~~-~g~nTnl 174 (319)
+.+.++|+||||.+..+.-++.....+ ..+.- +.-+-.+|+||+.++.+.- . ..+..+-.+.+.+.. .|++||+
T Consensus 2 Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~~l~~~~~~~~l~~~l~~~~~~~g~T~~ 81 (164)
T cd01482 2 DIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNLPYKGGNTRT 81 (164)
T ss_pred CEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEEecCCCCCHHHHHHHHHhCcCCCCCChH
Confidence 467899999999987777777655444 43332 2366789999999986433 2 245555555566665 5889999
Q ss_pred HHHHHHHHHHHHh--CCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 175 QEVFDLILEVAVN--GNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 175 ~~vf~~IL~~A~k--~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
..+++.+++...+ .+. ..+.++.|+||||++.+. ..+.+.++.++.|.+
T Consensus 82 ~~aL~~a~~~~~~~~~~~-r~~~~k~iillTDG~~~~--------~~~~~a~~lk~~gi~ 132 (164)
T cd01482 82 GKALTHVREKNFTPDAGA-RPGVPKVVILITDGKSQD--------DVELPARVLRNLGVN 132 (164)
T ss_pred HHHHHHHHHHhcccccCC-CCCCCEEEEEEcCCCCCc--------hHHHHHHHHHHCCCE
Confidence 9999987765432 222 245789999999997531 345566777887776
No 14
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.74 E-value=2.8e-07 Score=76.85 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=85.8
Q ss_pred ceEEEEeCCCCCCCChHHHHHH-HHHHHhhhccC--CcccEEEEeCCCceEEEe-c-CCCHHHHHHHhhcCCc--ccccc
Q 045156 101 NCKAICDVSGSVHGTPLEVSVA-LGLLVSELSEE--PWKGKLITFGEKPELHLV-E-GDDLKSKTRFVSNVNW--DMNTD 173 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaia-L~lllae~~~~--~~~~~~ItFs~~p~~~~l-~-g~~l~ekv~~i~~~~~--g~nTn 173 (319)
++++++|+||||.+..++.++. +.-++..+... .-+..+++|++++....- . ..+..+..+.+.+... |+.|+
T Consensus 2 di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~ 81 (161)
T cd01450 2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYKSKDDLLKAVKNLKYLGGGGTN 81 (161)
T ss_pred cEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEEECCCCCCHHHHHHHHHhcccCCCCCcc
Confidence 5678999999999877777776 45555666543 356679999998875433 2 2235555555555533 34899
Q ss_pred HHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 174 FQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 174 l~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
+..++..+.+...+..-...+-.+.+++|||++-+.. ++...+.++++++|.+
T Consensus 82 ~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~------~~~~~~~~~~~~~~v~ 134 (161)
T cd01450 82 TGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDG------GDPKEAAAKLKDEGIK 134 (161)
T ss_pred HHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCC------cchHHHHHHHHHCCCE
Confidence 9999998888776553222345788999999976442 2456667777776544
No 15
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=98.71 E-value=4.5e-07 Score=78.91 Aligned_cols=106 Identities=18% Similarity=0.178 Sum_probs=73.7
Q ss_pred ceEEEEeCCCCCCC-ChHHHHHHHHHHHhhhccC-CcccEEEEeCCCc------eEEEe-cC-CCHH-HHHHHhhcCCcc
Q 045156 101 NCKAICDVSGSVHG-TPLEVSVALGLLVSELSEE-PWKGKLITFGEKP------ELHLV-EG-DDLK-SKTRFVSNVNWD 169 (319)
Q Consensus 101 ~~I~v~DvSGSM~g-~p~dvaiaL~lllae~~~~-~~~~~~ItFs~~p------~~~~l-~g-~~l~-ekv~~i~~~~~g 169 (319)
.+.+++|+||||.+ .+++.|...+..+.+.... --+-.+++|+++. .++.. +. ..+. +-.+.+.....|
T Consensus 2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (174)
T cd01454 2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFDESLHERARKRLAALSPG 81 (174)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcccccchhHHHHHHccCCC
Confidence 36788999999998 6999999888777554432 3566889999872 23332 22 2222 222335566678
Q ss_pred ccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccc
Q 045156 170 MNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEA 210 (319)
Q Consensus 170 ~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a 210 (319)
++|++..++..+++...+.. .-++-||+|||++-+..
T Consensus 82 g~T~~~~al~~a~~~l~~~~----~~~~~iiliTDG~~~~~ 118 (174)
T cd01454 82 GNTRDGAAIRHAAERLLARP----EKRKILLVISDGEPNDL 118 (174)
T ss_pred CCCcHHHHHHHHHHHHhcCC----CcCcEEEEEeCCCcCcc
Confidence 89999999998888765432 23778999999987654
No 16
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.69 E-value=6.7e-07 Score=72.84 Aligned_cols=133 Identities=18% Similarity=0.200 Sum_probs=87.0
Q ss_pred ceEEEEeCCCCCCCChHHHHHHHHHHH-hhhcc--CCcccEEEEeCCCceEEEecC--CCHHHHHHHhhcCC--cccccc
Q 045156 101 NCKAICDVSGSVHGTPLEVSVALGLLV-SELSE--EPWKGKLITFGEKPELHLVEG--DDLKSKTRFVSNVN--WDMNTD 173 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~--~~~~~~~ItFs~~p~~~~l~g--~~l~ekv~~i~~~~--~g~nTn 173 (319)
+.++++|+||||....++.++.....+ ..+.. ...+-.++.|++.+....-.. .+..+..+.+.... .+++|+
T Consensus 2 ~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 81 (161)
T cd00198 2 DIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALKKGLGGGTN 81 (161)
T ss_pred cEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceeecccccCCHHHHHHHHHhcccCCCCCcc
Confidence 578899999999666777666644444 55544 357778999998776543322 23433444444443 789999
Q ss_pred HHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCCCCCCeEEEEeCCC
Q 045156 174 FQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRH 245 (319)
Q Consensus 174 l~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~~~~P~ivfWNl~~ 245 (319)
+..++..+++...+.. ...-++.|+||||+...... ...+...++.++.+ .++.+-.+.+
T Consensus 82 ~~~al~~~~~~~~~~~--~~~~~~~lvvitDg~~~~~~-----~~~~~~~~~~~~~~-----v~v~~v~~g~ 141 (161)
T cd00198 82 IGAALRLALELLKSAK--RPNARRVIILLTDGEPNDGP-----ELLAEAARELRKLG-----ITVYTIGIGD 141 (161)
T ss_pred HHHHHHHHHHHhcccC--CCCCceEEEEEeCCCCCCCc-----chhHHHHHHHHHcC-----CEEEEEEcCC
Confidence 9999999999877654 23458899999999654321 23444555566642 3455555554
No 17
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.69 E-value=4.9e-07 Score=80.00 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=86.6
Q ss_pred ceEEEEeCCCCCCCChHHHHHHHHHHH-hhhc--------cCCcccEEEEeCCCceEEEe-c--CCCHHHHHHHhhcCCc
Q 045156 101 NCKAICDVSGSVHGTPLEVSVALGLLV-SELS--------EEPWKGKLITFGEKPELHLV-E--GDDLKSKTRFVSNVNW 168 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~--------~~~~~~~~ItFs~~p~~~~l-~--g~~l~ekv~~i~~~~~ 168 (319)
+.+.++|+||||.+.+++.++....-+ ..+. ++-.+-.+|+||+.+.++.- . ..+..+-.+.+.+..+
T Consensus 4 dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~~l~~~~~~~~~l~~~i~~l~~ 83 (186)
T cd01480 4 DITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRDIRNYTSLKEAVDNLEY 83 (186)
T ss_pred eEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeEecccccCCHHHHHHHHHhCcc
Confidence 578899999999998888877644333 3332 22367789999999986543 2 2455555555666654
Q ss_pred -cccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 169 -DMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 169 -g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
|++|++..++....+....+ ....-++.|+++||++=+.. . ....+...+..+++|..
T Consensus 84 ~gg~T~~~~AL~~a~~~l~~~--~~~~~~~~iillTDG~~~~~---~-~~~~~~~~~~~~~~gi~ 142 (186)
T cd01480 84 IGGGTFTDCALKYATEQLLEG--SHQKENKFLLVITDGHSDGS---P-DGGIEKAVNEADHLGIK 142 (186)
T ss_pred CCCCccHHHHHHHHHHHHhcc--CCCCCceEEEEEeCCCcCCC---c-chhHHHHHHHHHHCCCE
Confidence 88999999999888876652 22346899999999964211 1 13445566667887877
No 18
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=98.69 E-value=1.6e-07 Score=82.77 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=68.3
Q ss_pred cceEEEEeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEe-cC--CCHHHHHHHhhcCCccccccHHH
Q 045156 100 RNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLV-EG--DDLKSKTRFVSNVNWDMNTDFQE 176 (319)
Q Consensus 100 ~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l-~g--~~l~ekv~~i~~~~~g~nTnl~~ 176 (319)
-+.+.++|+||||.+......-..--++..+..+--+-.+|+||++++++.- .. ..+...++.+.+...|++|++..
T Consensus 5 ~Dvv~llD~SgSm~~~~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~l~~~~~~g~T~~~~ 84 (185)
T cd01474 5 FDLYFVLDKSGSVAANWIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLTDDSSAIIKGLEVLKKVTPSGQTYIHE 84 (185)
T ss_pred eeEEEEEeCcCchhhhHHHHHHHHHHHHHHcCCCCcEEEEEEecCCceEEEeccccHHHHHHHHHHHhccCCCCCCcHHH
Confidence 3678999999999986544432222222333333367789999999986433 21 22334444455665688999999
Q ss_pred HHHHHHHHHHhCCCChhhccceEEEEecCcc
Q 045156 177 VFDLILEVAVNGNLKPEQMIKRLFVFSDMEF 207 (319)
Q Consensus 177 vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqF 207 (319)
+++.+.+...+.......-.+.|+++||++-
T Consensus 85 aL~~a~~~l~~~~~~~r~~~~~villTDG~~ 115 (185)
T cd01474 85 GLENANEQIFNRNGGGRETVSVIIALTDGQL 115 (185)
T ss_pred HHHHHHHHHHhhccCCCCCCeEEEEEcCCCc
Confidence 9998877653221111111378999999985
No 19
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.68 E-value=1.7e-07 Score=83.99 Aligned_cols=106 Identities=15% Similarity=0.021 Sum_probs=73.2
Q ss_pred CCcceEEEEeCCCCCC------CChHHHHHHHHHHHhhhccCCcccEEEEeCCCce------EE--------EecCC---
Q 045156 98 KLRNCKAICDVSGSVH------GTPLEVSVALGLLVSELSEEPWKGKLITFGEKPE------LH--------LVEGD--- 154 (319)
Q Consensus 98 ~~~~~I~v~DvSGSM~------g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~------~~--------~l~g~--- 154 (319)
.-.++++++|+||||. +.+++.++....-+.+.-.+.-+-.+++|+++.. .. .+.+.
T Consensus 19 ~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 98 (206)
T cd01456 19 LPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGFPSA 98 (206)
T ss_pred CCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccccccccccccCCCCcc
Confidence 3568999999999998 5789998877776644443346778999999531 11 11121
Q ss_pred CHHHHHHHhhcCC-ccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCcccc
Q 045156 155 DLKSKTRFVSNVN-WDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDE 209 (319)
Q Consensus 155 ~l~ekv~~i~~~~-~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~ 209 (319)
+...-.+.+.+.. .+++|++..+++..++... . .-++.||++||++-+.
T Consensus 99 ~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~-~-----~~~~~iillTDG~~~~ 148 (206)
T cd01456 99 QRSALDAALNSLQTPTGWTPLAAALAEAAAYVD-P-----GRVNVVVLITDGEDTC 148 (206)
T ss_pred cHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC-C-----CCcceEEEEcCCCccC
Confidence 2233334456666 8999999999998877643 1 1257899999997653
No 20
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=98.64 E-value=1.6e-07 Score=97.44 Aligned_cols=105 Identities=19% Similarity=0.264 Sum_probs=77.2
Q ss_pred CcceEEEEeCCCCCCCChHHHHHHHHHH-HhhhccCCcccEEEEeCCCceEEEe-----cCCCHHHHHHHhhcCCccccc
Q 045156 99 LRNCKAICDVSGSVHGTPLEVSVALGLL-VSELSEEPWKGKLITFGEKPELHLV-----EGDDLKSKTRFVSNVNWDMNT 172 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~dvaiaL~ll-lae~~~~~~~~~~ItFs~~p~~~~l-----~g~~l~ekv~~i~~~~~g~nT 172 (319)
-.+++.++|+||||.|.+++.|.....+ +..+..+ -+-.+|+|+++.....- ...++.+..+++.....+|+|
T Consensus 271 p~~vvfvlD~SgSM~g~~i~~ak~al~~~l~~L~~~-d~~~ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT 349 (596)
T TIGR03788 271 PRELVFVIDTSGSMAGESIEQAKSALLLALDQLRPG-DRFNIIQFDSDVTLLFPVPVPATAHNLARARQFVAGLQADGGT 349 (596)
T ss_pred CceEEEEEECCCCCCCccHHHHHHHHHHHHHhCCCC-CEEEEEEECCcceEeccccccCCHHHHHHHHHHHhhCCCCCCc
Confidence 3578899999999999999877764444 4666554 46788999999885421 124566666667777788999
Q ss_pred cHHHHHHHHHHHHHhCCCChhhccceEEEEecCcc
Q 045156 173 DFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEF 207 (319)
Q Consensus 173 nl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqF 207 (319)
|++.+++.+++.... ..+.-++.||+|||++.
T Consensus 350 ~l~~aL~~a~~~~~~---~~~~~~~~iillTDG~~ 381 (596)
T TIGR03788 350 EMAGALSAALRDDGP---ESSGALRQVVFLTDGAV 381 (596)
T ss_pred cHHHHHHHHHHhhcc---cCCCceeEEEEEeCCCC
Confidence 999999988875211 12345789999999975
No 21
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=98.63 E-value=4.7e-07 Score=77.82 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=71.6
Q ss_pred ceEEEEeCCCCCCCChHHHHHH-HHHHHhhhccC--CcccEEEEeCCCceEEEecC--CCHHHHHHHhhcCCc-cccccH
Q 045156 101 NCKAICDVSGSVHGTPLEVSVA-LGLLVSELSEE--PWKGKLITFGEKPELHLVEG--DDLKSKTRFVSNVNW-DMNTDF 174 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaia-L~lllae~~~~--~~~~~~ItFs~~p~~~~l~g--~~l~ekv~~i~~~~~-g~nTnl 174 (319)
+.+.++|+||||.+..++.+.. +.-++..+... --+-.+|+|+++++...-.. .+...-.+.+..... |++|++
T Consensus 2 Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~T~~ 81 (164)
T cd01472 2 DIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNTYRSKDDVLEAVKNLRYIGGGTNT 81 (164)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEEecCCCCCHHHHHHHHHhCcCCCCCchH
Confidence 5788999999999977776655 44444555422 24668899999998653322 344333344455554 889999
Q ss_pred HHHHHHHHHHHHhC--CCChhhccceEEEEecCc
Q 045156 175 QEVFDLILEVAVNG--NLKPEQMIKRLFVFSDME 206 (319)
Q Consensus 175 ~~vf~~IL~~A~k~--~l~~e~mpk~v~V~SDmq 206 (319)
..++..+.+..... + +...-++.++++||++
T Consensus 82 ~~al~~a~~~l~~~~~~-~~~~~~~~iiliTDG~ 114 (164)
T cd01472 82 GKALKYVRENLFTEASG-SREGVPKVLVVITDGK 114 (164)
T ss_pred HHHHHHHHHHhCCcccC-CCCCCCEEEEEEcCCC
Confidence 99999888865432 2 2223578899999994
No 22
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.62 E-value=3.5e-07 Score=78.67 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=71.6
Q ss_pred ceEEEEeCCCCCCCChHHHHHH-HHHHHhhhccCCcccEEEEeCCCceEEE-ecC---CCHHHHHHHhhcCCccccccHH
Q 045156 101 NCKAICDVSGSVHGTPLEVSVA-LGLLVSELSEEPWKGKLITFGEKPELHL-VEG---DDLKSKTRFVSNVNWDMNTDFQ 175 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaia-L~lllae~~~~~~~~~~ItFs~~p~~~~-l~g---~~l~ekv~~i~~~~~g~nTnl~ 175 (319)
++++++|+||||.+.+++.+.. +..++..+.+. -+-.+|+|++.+.... +.. .+...-.+.+.+..-+++|++.
T Consensus 2 ~v~~vlD~S~SM~~~rl~~ak~a~~~l~~~l~~~-~~~~li~F~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~ 80 (155)
T cd01466 2 DLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDA-DRLSIVTFSTSAKRLSPLRRMTAKGKRSAKRVVDGLQAGGGTNVV 80 (155)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCc-ceEEEEEecCCccccCCCcccCHHHHHHHHHHHHhccCCCCccHH
Confidence 5678999999999988887766 44445666655 4578899999877532 111 1112222334566778899999
Q ss_pred HHHHHHHHHHHhCCCChhhccceEEEEecCcc
Q 045156 176 EVFDLILEVAVNGNLKPEQMIKRLFVFSDMEF 207 (319)
Q Consensus 176 ~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqF 207 (319)
.++....+..... .+...++.+|++||++-
T Consensus 81 ~al~~a~~~~~~~--~~~~~~~~iillTDG~~ 110 (155)
T cd01466 81 GGLKKALKVLGDR--RQKNPVASIMLLSDGQD 110 (155)
T ss_pred HHHHHHHHHHhhc--ccCCCceEEEEEcCCCC
Confidence 9999888876433 12234689999999964
No 23
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.53 E-value=1.4e-06 Score=90.96 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=91.3
Q ss_pred CcceEEEEeCCCCCCCChHHHHHHHHHHHhhhc-cCCcccEEEEeCCCceEEEec-CCCHHHHHHHhhcCCccccccHHH
Q 045156 99 LRNCKAICDVSGSVHGTPLEVSVALGLLVSELS-EEPWKGKLITFGEKPELHLVE-GDDLKSKTRFVSNVNWDMNTDFQE 176 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~-~~~~~~~~ItFs~~p~~~~l~-g~~l~ekv~~i~~~~~g~nTnl~~ 176 (319)
...+++++|+||||.+.++..|+.+...+.... ..-=+-.+|+|+++..-+.++ ..++....+.+.....|++|++..
T Consensus 407 ~~~v~fvvD~SGSM~~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gGgTpL~~ 486 (589)
T TIGR02031 407 GRLLIFVVDASGSAAVARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLPPSRSVEQAKRRLDVLPGGGGTPLAA 486 (589)
T ss_pred CceEEEEEECCCCCChHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCceEECCCCCCHHHHHHHHhcCCCCCCCcHHH
Confidence 556889999999999889998887766653322 221256899999776433444 356655556677888999999999
Q ss_pred HHHHHHHHHHhCCCChhhccceEEEEecCccccccCC----------CCcchHHHHHHHHHhcCCC
Q 045156 177 VFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLH----------PWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 177 vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~----------~w~t~~e~i~~ky~~~Gy~ 232 (319)
++.+.++.+.+..-+ .....|+++||++-+..-+. ........+.++.++.|+.
T Consensus 487 gL~~A~~~~~~~~~~--~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~ 550 (589)
T TIGR02031 487 GLAAAFQTALQARSS--GGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIREAGMP 550 (589)
T ss_pred HHHHHHHHHHHhccc--CCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHHhcCCe
Confidence 999988887654322 34578999999988653211 0112234456778888876
No 24
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.53 E-value=1.4e-06 Score=73.33 Aligned_cols=132 Identities=14% Similarity=0.171 Sum_probs=86.7
Q ss_pred ceEEEEeCCCCCCCChHHHHHHHHHHH-hhhccC--CcccEEEEeCCCceEEEec--CCCHHHHHHHhhcCC--cccccc
Q 045156 101 NCKAICDVSGSVHGTPLEVSVALGLLV-SELSEE--PWKGKLITFGEKPELHLVE--GDDLKSKTRFVSNVN--WDMNTD 173 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~~--~~~~~~ItFs~~p~~~~l~--g~~l~ekv~~i~~~~--~g~nTn 173 (319)
+.++++|+||||.+.+++.+.+....+ ..+... -..-.+++|++.+....-. ..+...-...+.... .+++|+
T Consensus 3 ~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (177)
T smart00327 3 DVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLFPLNDSRSKDALLEALASLSYKLGGGTN 82 (177)
T ss_pred cEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEEcccccCCHHHHHHHHHhcCCCCCCCch
Confidence 578899999999998999888865555 555543 4677899999987644332 344444444455665 588999
Q ss_pred HHHHHHHHHHHHHh--CCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCCCCCCeEEEEeCC
Q 045156 174 FQEVFDLILEVAVN--GNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLR 244 (319)
Q Consensus 174 l~~vf~~IL~~A~k--~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~~~~P~ivfWNl~ 244 (319)
+..++..+++...+ .+.+. .-.+.|+||||++-... .......++.++.+ ..++..-+.
T Consensus 83 ~~~al~~~~~~~~~~~~~~~~-~~~~~iviitDg~~~~~------~~~~~~~~~~~~~~-----i~i~~i~~~ 143 (177)
T smart00327 83 LGAALQYALENLFSKSAGSRR-GAPKVLILITDGESNDG------GDLLKAAKELKRSG-----VKVFVVGVG 143 (177)
T ss_pred HHHHHHHHHHHhcCcCCCCCC-CCCeEEEEEcCCCCCCC------ccHHHHHHHHHHCC-----CEEEEEEcc
Confidence 99999998888652 11111 22678999999855421 23444555556644 335555544
No 25
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.48 E-value=1.7e-06 Score=75.81 Aligned_cols=108 Identities=16% Similarity=0.112 Sum_probs=72.8
Q ss_pred ceEEEEeCCCCCCCCh-HHHHHH-HHHHHhhhccCC--cccEEEEeCCCceEE-EecC---C---CHHHHHHHhhcCC-c
Q 045156 101 NCKAICDVSGSVHGTP-LEVSVA-LGLLVSELSEEP--WKGKLITFGEKPELH-LVEG---D---DLKSKTRFVSNVN-W 168 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p-~dvaia-L~lllae~~~~~--~~~~~ItFs~~p~~~-~l~g---~---~l~ekv~~i~~~~-~ 168 (319)
+.++++|+||||.+.. ++.++. +.-++..+.-.+ .+-.+|+|++.+..+ .+.. . .+...++.+.... -
T Consensus 2 Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~~ 81 (186)
T cd01471 2 DLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPNSTNKDLALNAIRALLSLYYP 81 (186)
T ss_pred cEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCccccchHHHHHHHHHHHhCcCC
Confidence 4678999999999877 776666 444555554333 456789999999853 3432 1 1222455554443 4
Q ss_pred cccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccc
Q 045156 169 DMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFD 208 (319)
Q Consensus 169 g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd 208 (319)
|++||+..+++.+.+...+.+-...+-++.|+|+||++-+
T Consensus 82 ~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~ 121 (186)
T cd01471 82 NGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPD 121 (186)
T ss_pred CCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCC
Confidence 6789999999988877665222334568899999999743
No 26
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.48 E-value=3.1e-06 Score=88.44 Aligned_cols=133 Identities=19% Similarity=0.112 Sum_probs=93.2
Q ss_pred CCcceEEEEeCCCCCCCChHHHHHHHHHHH-hhhccCCcccEEEEeCCC-ceEEEecCCCHHHHHHHhhcCCccccccHH
Q 045156 98 KLRNCKAICDVSGSVHGTPLEVSVALGLLV-SELSEEPWKGKLITFGEK-PELHLVEGDDLKSKTRFVSNVNWDMNTDFQ 175 (319)
Q Consensus 98 ~~~~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~~~~~~~~ItFs~~-p~~~~l~g~~l~ekv~~i~~~~~g~nTnl~ 175 (319)
.....+.++|+||||.+..|..++.....+ .+.-..-=+-.+|+|+.+ .+++.-+..++....+.+..+..|++|+|+
T Consensus 400 ~~~~vvfvvD~SGSM~~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lppT~~~~~~~~~L~~l~~gGgTpL~ 479 (584)
T PRK13406 400 SETTTIFVVDASGSAALHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLPPTRSLVRAKRSLAGLPGGGGTPLA 479 (584)
T ss_pred CCccEEEEEECCCCCcHhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcCCCcCHHHHHHHHhcCCCCCCChHH
Confidence 356778899999999999999999876665 443233346789999776 554433456777777778889999999999
Q ss_pred HHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCC--Cc---chHHHHHHHHHhcCCC
Q 045156 176 EVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHP--WE---TDYQAIVRKYTEKGYG 232 (319)
Q Consensus 176 ~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~--w~---t~~e~i~~ky~~~Gy~ 232 (319)
.++...++.+....-+ ...+.|+++||++.+...+.. .. ..-..+.++.++.|+.
T Consensus 480 ~gL~~A~~~l~~~~~~--~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~ 539 (584)
T PRK13406 480 AGLDAAAALALQVRRK--GMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLP 539 (584)
T ss_pred HHHHHHHHHHHHhccC--CCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCe
Confidence 9999988887665322 256899999999976532211 00 1112345666777776
No 27
>PRK13685 hypothetical protein; Provisional
Probab=98.47 E-value=1.8e-05 Score=76.54 Aligned_cols=166 Identities=14% Similarity=0.075 Sum_probs=105.7
Q ss_pred CcceEEEEeCCCCCCC-----ChHHHHHHHHHHH-hhhccCCcccEEEEeCCCceEEEecCCCHHHHHHHhhcCCccccc
Q 045156 99 LRNCKAICDVSGSVHG-----TPLEVSVALGLLV-SELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNWDMNT 172 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g-----~p~dvaiaL~lll-ae~~~~~~~~~~ItFs~~p~~~~l~g~~l~ekv~~i~~~~~g~nT 172 (319)
..+.++++|+||||.+ +.++.|+..+.-+ .++..+ -+-.+|+|++++.++.-...+...-...+.+.+.+++|
T Consensus 88 ~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~-d~vglv~Fa~~a~~~~p~t~d~~~l~~~l~~l~~~~~T 166 (326)
T PRK13685 88 RAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPG-INLGLIAFAGTATVLVSPTTNREATKNAIDKLQLADRT 166 (326)
T ss_pred CceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCC-CeEEEEEEcCceeecCCCCCCHHHHHHHHHhCCCCCCc
Confidence 4478899999999986 5788888777655 444444 46689999999876443334444444456677788999
Q ss_pred cHHHHHHHHHHHHHhC--CCCh--hhccceEEEEecCccccccCCCC-cchHHHHHHHHHhcCCCCCCCeEEEEeCCCC-
Q 045156 173 DFQEVFDLILEVAVNG--NLKP--EQMIKRLFVFSDMEFDEASLHPW-ETDYQAIVRKYTEKGYGSAVPEIIFWNLRHS- 246 (319)
Q Consensus 173 nl~~vf~~IL~~A~k~--~l~~--e~mpk~v~V~SDmqFd~a~~~~w-~t~~e~i~~ky~~~Gy~~~~P~ivfWNl~~~- 246 (319)
++..++...++.+.+. .+.+ +.-++.|+++||++-+....... ...++ +.+..+++|.. |+.--+.+.
T Consensus 167 ~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~-aa~~a~~~gi~-----i~~Ig~G~~~ 240 (326)
T PRK13685 167 ATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYT-AARTAKDQGVP-----ISTISFGTPY 240 (326)
T ss_pred chHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHH-HHHHHHHcCCe-----EEEEEECCCC
Confidence 9999998888876531 1111 12368899999997553221000 12233 44556676766 333334333
Q ss_pred CCCCcccCCCCeEEEeccCHHHHHHHHhC
Q 045156 247 KSTPVPEGQEGVALVSGFSKILIKLFLEN 275 (319)
Q Consensus 247 ~~~Pv~~~~~gv~LVSG~S~~i~k~~l~~ 275 (319)
+.. ..+|...++-..+..++-+-+.
T Consensus 241 g~~----~~~g~~~~~~~d~~~L~~iA~~ 265 (326)
T PRK13685 241 GSV----EINGQRQPVPVDDESLKKIAQL 265 (326)
T ss_pred CCc----CcCCceeeecCCHHHHHHHHHh
Confidence 332 2345555677788888888875
No 28
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.45 E-value=1.8e-06 Score=72.32 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=77.4
Q ss_pred ceEEEEeCCCCCCCC-----hHHHHHHHHHHH-hhhccCCcccEEEEeCCCceEEEecC---CCHHHHHHHhhc-CCccc
Q 045156 101 NCKAICDVSGSVHGT-----PLEVSVALGLLV-SELSEEPWKGKLITFGEKPELHLVEG---DDLKSKTRFVSN-VNWDM 170 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~-----p~dvaiaL~lll-ae~~~~~~~~~~ItFs~~p~~~~l~g---~~l~ekv~~i~~-~~~g~ 170 (319)
+.++++|+||||.+. .++.++....-+ .+++ + -+-.+++|++++.+..--. ..+.+.++.+.. ..+++
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~v~l~~f~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~~~ 78 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANLP-G-DRVGLVSFSDSSRTLSPLTSDKDELKNALNKLSPQGMPGG 78 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHHT-T-SEEEEEEESTSCEEEEEEESSHHHHHHHHHTHHHHG--SS
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHCC-C-CEEEEEEecccccccccccccHHHHHHHhhcccccccCcc
Confidence 478999999999975 567666555544 5554 3 3779999999987533212 345555555532 35688
Q ss_pred cccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCCCCCCeEEEEeCCCC
Q 045156 171 NTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRHS 246 (319)
Q Consensus 171 nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~~~~P~ivfWNl~~~ 246 (319)
+|++..++..+++.....+ .-.+.|++|||++-. ....+ ..+..++.|.. ++.-.+...
T Consensus 79 ~t~~~~al~~a~~~~~~~~----~~~~~iv~iTDG~~~-------~~~~~-~~~~~~~~~i~-----i~~v~~~~~ 137 (172)
T PF13519_consen 79 GTNLYDALQEAAKMLASSD----NRRRAIVLITDGEDN-------SSDIE-AAKALKQQGIT-----IYTVGIGSD 137 (172)
T ss_dssp S--HHHHHHHHHHHHHC-S----SEEEEEEEEES-TTH-------CHHHH-HHHHHHCTTEE-----EEEEEES-T
T ss_pred CCcHHHHHHHHHHHHHhCC----CCceEEEEecCCCCC-------cchhH-HHHHHHHcCCe-----EEEEEECCC
Confidence 9999999999888876654 246789999998433 12223 44556665644 444455443
No 29
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.39 E-value=6.1e-06 Score=71.40 Aligned_cols=155 Identities=17% Similarity=0.098 Sum_probs=90.3
Q ss_pred cceEEEEeCCCCCCCC------hHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEe-c-C-CCHHHHHHHhhcCCccc
Q 045156 100 RNCKAICDVSGSVHGT------PLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLV-E-G-DDLKSKTRFVSNVNWDM 170 (319)
Q Consensus 100 ~~~I~v~DvSGSM~g~------p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l-~-g-~~l~ekv~~i~~~~~g~ 170 (319)
-++++++|+||||... .++.|..+...+.+...+ -+-.+++|++.+..+.- . + ..+.+.++.+....-++
T Consensus 3 ~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~~~~-~~v~lv~f~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g 81 (180)
T cd01467 3 RDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRREN-DRIGLVVFAGAAFTQAPLTLDRESLKELLEDIKIGLAGQ 81 (180)
T ss_pred ceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHhCCC-CeEEEEEEcCCeeeccCCCccHHHHHHHHHHhhhcccCC
Confidence 3678899999999752 467777665544333222 35688999998764322 1 2 23445555554333578
Q ss_pred cccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCCC
Q 045156 171 NTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRHSKSTP 250 (319)
Q Consensus 171 nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~~~~P~ivfWNl~~~~~~P 250 (319)
.|++..++...++...+..- -.+.|+|+||++-+. + + .....+.+..++.|.. |+.-=+.+....|
T Consensus 82 ~T~l~~al~~a~~~l~~~~~----~~~~iiliTDG~~~~--g--~-~~~~~~~~~~~~~gi~-----i~~i~ig~~~~~~ 147 (180)
T cd01467 82 GTAIGDAIGLAIKRLKNSEA----KERVIVLLTDGENNA--G--E-IDPATAAELAKNKGVR-----IYTIGVGKSGSGP 147 (180)
T ss_pred CCcHHHHHHHHHHHHHhcCC----CCCEEEEEeCCCCCC--C--C-CCHHHHHHHHHHCCCE-----EEEEEecCCCCCc
Confidence 89999999888877654321 247899999996442 1 1 2233344555565655 3333333322222
Q ss_pred cccCCCCeEEEeccCHHHHHHHHhC
Q 045156 251 VPEGQEGVALVSGFSKILIKLFLEN 275 (319)
Q Consensus 251 v~~~~~gv~LVSG~S~~i~k~~l~~ 275 (319)
.. +.+ .......++.+-+.
T Consensus 148 ~~--~~~----~~~~~~~l~~la~~ 166 (180)
T cd01467 148 KP--DGS----TILDEDSLVEIADK 166 (180)
T ss_pred CC--CCc----ccCCHHHHHHHHHh
Confidence 21 111 24556777777655
No 30
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=98.38 E-value=6e-06 Score=70.45 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=65.7
Q ss_pred ceEEEEeCCCCCCCChHHHHHHHHHHHhhhccC--CcccEEEEeCCCceEE-Ee--c-CCCHHHHHHHhhcCCc-ccccc
Q 045156 101 NCKAICDVSGSVHGTPLEVSVALGLLVSELSEE--PWKGKLITFGEKPELH-LV--E-GDDLKSKTRFVSNVNW-DMNTD 173 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~--~~~~~~ItFs~~p~~~-~l--~-g~~l~ekv~~i~~~~~-g~nTn 173 (319)
+.+.++|+||||.+.--..--.+.-++..+... .-+-.+|+|++.++.+ .+ . ..+..+-.+.+.+... |++|+
T Consensus 2 dv~~llD~S~Sm~~~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~~~~~l~~~i~~l~~~gg~T~ 81 (163)
T cd01476 2 DLLFVLDSSGSVRGKFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKVDNLRFIGGTTA 81 (163)
T ss_pred CEEEEEeCCcchhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCCCHHHHHHHHHhCccCCCCcc
Confidence 467899999999874211111223333444432 2556789999954432 22 2 2333333344445543 78899
Q ss_pred HHHHHHHHHHHHHhCCCChhhccceEEEEecCccc
Q 045156 174 FQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFD 208 (319)
Q Consensus 174 l~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd 208 (319)
+..++....+...+..-.+...++.++|+||+..+
T Consensus 82 l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~ 116 (163)
T cd01476 82 TGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSH 116 (163)
T ss_pred HHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCC
Confidence 99999988877643222233457889999999654
No 31
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=98.37 E-value=1.1e-05 Score=76.47 Aligned_cols=134 Identities=16% Similarity=0.099 Sum_probs=95.7
Q ss_pred CcceEEEEeCCCCCCCC-hHHHHHHHHHHHhhhc-cCCcccEEEEeC-CCceEEEecCCCHHHHHHHhhcCCccccccHH
Q 045156 99 LRNCKAICDVSGSVHGT-PLEVSVALGLLVSELS-EEPWKGKLITFG-EKPELHLVEGDDLKSKTRFVSNVNWDMNTDFQ 175 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~-p~dvaiaL~lllae~~-~~~~~~~~ItFs-~~p~~~~l~g~~l~ekv~~i~~~~~g~nTnl~ 175 (319)
..-+|.|+|.||||... .|..|++.++-|-+=+ +.--+-.+|+|. +..+++--+..++...-+.+++++.|+.|.|-
T Consensus 78 g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~pT~sv~~~~~~L~~l~~GG~TPL~ 157 (261)
T COG1240 78 GNLIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPPTSSVELAERALERLPTGGKTPLA 157 (261)
T ss_pred CCcEEEEEeCcccchhHHHHHHHHHHHHHHHHHHHHccceEEEEEecCCcceEEeCCcccHHHHHHHHHhCCCCCCCchH
Confidence 44578889999999996 8999888777663322 223567899999 66666555668888888889999999999999
Q ss_pred HHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 176 EVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 176 ~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
.++....+.....+-+..+--..++|+||++-+...+..-...--.+..+.+..|-.
T Consensus 158 ~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~ 214 (261)
T COG1240 158 DALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQ 214 (261)
T ss_pred HHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCc
Confidence 999887777766664444556789999999966554433112233355555555543
No 32
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.35 E-value=1.2e-05 Score=84.58 Aligned_cols=139 Identities=19% Similarity=0.101 Sum_probs=89.9
Q ss_pred HhhcCCCcceEEEEeCCCCCCC-ChHHHHHHHHHHHhhh-ccCCcccEEEEeCCCceEEEec-CCCHHHHHHHhhcCCcc
Q 045156 93 LSKEGKLRNCKAICDVSGSVHG-TPLEVSVALGLLVSEL-SEEPWKGKLITFGEKPELHLVE-GDDLKSKTRFVSNVNWD 169 (319)
Q Consensus 93 l~~~g~~~~~I~v~DvSGSM~g-~p~dvaiaL~lllae~-~~~~~~~~~ItFs~~p~~~~l~-g~~l~ekv~~i~~~~~g 169 (319)
.+.......+++++|+||||.+ ..+..|++.++.+... -..--+-.+|+|+.+..-+.++ ..+...-.+.+.....|
T Consensus 459 ~~~~r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~~~~p~t~~~~~~~~~L~~l~~g 538 (633)
T TIGR02442 459 IRAGRAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPPTSSVELAARRLEELPTG 538 (633)
T ss_pred HhcCCCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEcCCCCCHHHHHHHHHhCCCC
Confidence 3334456678899999999987 4888887776555332 2222566889998653333344 34444433556778889
Q ss_pred ccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCcccccc-C-CCCcchHHHHHHHHHhcCCC
Q 045156 170 MNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEAS-L-HPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 170 ~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~-~-~~w~t~~e~i~~ky~~~Gy~ 232 (319)
++|++..++...++.......+.......|||+||++-+.++ + ..+ .....+.+++++.|..
T Consensus 539 G~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~-~~~~~~a~~l~~~~i~ 602 (633)
T TIGR02442 539 GRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPT-DDARTIAAKLAARGIL 602 (633)
T ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChH-HHHHHHHHHHHhcCCe
Confidence 999999999988887663211112346789999999876541 1 111 1234466777777765
No 33
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=98.34 E-value=4.5e-06 Score=70.87 Aligned_cols=108 Identities=15% Similarity=0.217 Sum_probs=74.9
Q ss_pred ceEEEEeCCCCCCCChHHHHHHHHHHH-hhh--ccCCcccEEEEeCCCceEE-EecC-CCHHHHHHHh-hcC-Ccccccc
Q 045156 101 NCKAICDVSGSVHGTPLEVSVALGLLV-SEL--SEEPWKGKLITFGEKPELH-LVEG-DDLKSKTRFV-SNV-NWDMNTD 173 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~--~~~~~~~~~ItFs~~p~~~-~l~g-~~l~ekv~~i-~~~-~~g~nTn 173 (319)
+.+.++|+||||.+..+..++....-+ ..+ ...-.+-.+++|++++..+ .+.. .+..+..+.+ ... .-+++||
T Consensus 1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~t~ 80 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFSLTDYQSKNDLLNAINDSIPSSGGGTN 80 (178)
T ss_dssp EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEETTSHSSHHHHHHHHHTTGGCCBSSB-
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeeecccccccccccccccccccccccccccccchhhh
Confidence 467899999999996666666655555 443 3444778999999999843 3332 4555555555 444 5688999
Q ss_pred HHHHHHHHHHHHHhC--CCChhhccceEEEEecCcccc
Q 045156 174 FQEVFDLILEVAVNG--NLKPEQMIKRLFVFSDMEFDE 209 (319)
Q Consensus 174 l~~vf~~IL~~A~k~--~l~~e~mpk~v~V~SDmqFd~ 209 (319)
+..|++.+++.-... +.++ .-++-+++|||+....
T Consensus 81 ~~~aL~~a~~~l~~~~~~~r~-~~~~~iiliTDG~~~~ 117 (178)
T PF00092_consen 81 LGAALKFAREQLFSSNNGGRP-NSPKVIILITDGNSND 117 (178)
T ss_dssp HHHHHHHHHHHTTSGGGTTGT-TSEEEEEEEESSSSSS
T ss_pred HHHHHhhhhhccccccccccc-ccccceEEEEeecccC
Confidence 999999988886543 3334 5689999999997765
No 34
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=98.26 E-value=4.8e-06 Score=70.59 Aligned_cols=94 Identities=22% Similarity=0.182 Sum_probs=57.6
Q ss_pred EEEEeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEe-cCCCHHHHHHHhhcCCccccccHHHHHHHH
Q 045156 103 KAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLV-EGDDLKSKTRFVSNVNWDMNTDFQEVFDLI 181 (319)
Q Consensus 103 I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l-~g~~l~ekv~~i~~~~~g~nTnl~~vf~~I 181 (319)
.+++|+||||+..-+.-.++-..-+.+.. +.+-++|.|...-+-+.. .. +...+.. .+..=||+|+|..||+.+
T Consensus 2 ~vaiDtSGSis~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~~~--~~~~~~~-~~~~GgGGTdf~pvf~~~ 76 (126)
T PF09967_consen 2 VVAIDTSGSISDEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVFRS--LEDELRD-IKLKGGGGTDFRPVFEYL 76 (126)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEEec--ccccccc-cccCCCCCCcchHHHHHH
Confidence 57899999998754433333222222222 567899999997664433 33 1111111 123457789999999998
Q ss_pred HHHHHhCCCChhhccceEEEEecCcccc
Q 045156 182 LEVAVNGNLKPEQMIKRLFVFSDMEFDE 209 (319)
Q Consensus 182 L~~A~k~~l~~e~mpk~v~V~SDmqFd~ 209 (319)
.+. + + -+.-+++|||++.+.
T Consensus 77 ~~~----~--~--~~~~vi~fTDg~~~~ 96 (126)
T PF09967_consen 77 EEN----R--P--RPSVVIYFTDGEGWP 96 (126)
T ss_pred Hhc----C--C--CCCEEEEEeCCCCCC
Confidence 764 1 1 144577899998765
No 35
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=98.26 E-value=1.4e-05 Score=70.24 Aligned_cols=125 Identities=13% Similarity=0.133 Sum_probs=84.7
Q ss_pred ceEEEEeCCCCCCCChHHHHHHHH-HHHhhhccCC--cccEEEEeCCCceEE-EecC-CCHHHHHHHhhcCC-ccccccH
Q 045156 101 NCKAICDVSGSVHGTPLEVSVALG-LLVSELSEEP--WKGKLITFGEKPELH-LVEG-DDLKSKTRFVSNVN-WDMNTDF 174 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaiaL~-lllae~~~~~--~~~~~ItFs~~p~~~-~l~g-~~l~ekv~~i~~~~-~g~nTnl 174 (319)
+.+.++|.||||.+..++-++... -++..+..+| -+-.+|+||++|+++ .+.. .+..+..+.+.++. .|++|++
T Consensus 2 Di~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~T~~ 81 (177)
T cd01469 2 DIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHISQLLGLTNT 81 (177)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecCccCCHHHHHHHHHhCccCCCCccH
Confidence 367899999999987888877644 4446666655 566889999999864 2332 34344444454553 5778999
Q ss_pred HHHHHHHHHHH--HhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 175 QEVFDLILEVA--VNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 175 ~~vf~~IL~~A--~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
..+++.+++.. .+++-++ ..++-++|+||++=+... + .+.+.+.-++.|..
T Consensus 82 ~~AL~~a~~~l~~~~~g~R~-~~~kv~illTDG~~~~~~-----~-~~~~~~~~k~~gv~ 134 (177)
T cd01469 82 ATAIQYVVTELFSESNGARK-DATKVLVVITDGESHDDP-----L-LKDVIPQAEREGII 134 (177)
T ss_pred HHHHHHHHHHhcCcccCCCC-CCCeEEEEEeCCCCCCcc-----c-cHHHHHHHHHCCcE
Confidence 99998887764 2344333 468999999999765421 1 14455556777876
No 36
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=98.21 E-value=2.1e-05 Score=70.69 Aligned_cols=128 Identities=18% Similarity=0.133 Sum_probs=83.1
Q ss_pred ceEEEEeCCCCCCCChHH-HHHH-HHHHHhhhccCC--cccEEEEeCCCceEE-EecC------CCHHHHHHHhhcCCc-
Q 045156 101 NCKAICDVSGSVHGTPLE-VSVA-LGLLVSELSEEP--WKGKLITFGEKPELH-LVEG------DDLKSKTRFVSNVNW- 168 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~d-vaia-L~lllae~~~~~--~~~~~ItFs~~p~~~-~l~g------~~l~ekv~~i~~~~~- 168 (319)
+.+.++|.||||...-.. -.+. +--++..+.-++ -+-.+|.||+.|+++ .+.. ..+...++.+...-+
T Consensus 2 Di~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~ 81 (192)
T cd01473 2 DLTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDEERYDKNELLKKINDLKNSYRS 81 (192)
T ss_pred cEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCcccccCHHHHHHHHHHHHhccCC
Confidence 356789999999864222 2222 223345555443 566889999999854 3321 234455555544333
Q ss_pred cccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 169 DMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 169 g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
|++|++..|++..++......-...+.||-++|+||++-+... ........+.+++.|-+
T Consensus 82 ~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~----~~~~~~~a~~lk~~gV~ 141 (192)
T cd01473 82 GGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSAS----KKELQDISLLYKEENVK 141 (192)
T ss_pred CCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcc----hhhHHHHHHHHHHCCCE
Confidence 8899999999988877654332334569999999999775421 23456677888998877
No 37
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=98.16 E-value=2.2e-05 Score=71.47 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=83.2
Q ss_pred ceEEEEeCCCCCCCChHHHHHHHHHHH-hhhccCC--cccEEEEeCCCceEEEe-c-CCCHHHHHHHhhcCC-ccccccH
Q 045156 101 NCKAICDVSGSVHGTPLEVSVALGLLV-SELSEEP--WKGKLITFGEKPELHLV-E-GDDLKSKTRFVSNVN-WDMNTDF 174 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~~~--~~~~~ItFs~~p~~~~l-~-g~~l~ekv~~i~~~~-~g~nTnl 174 (319)
+.+.++|+||||.+..++-++.....+ ..+.-+| .+-.+|+||++++++-- . ..+..+..+.+.++. .|++|+.
T Consensus 4 DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~~l~~~~~~~~l~~~i~~i~~~~~~t~t 83 (224)
T cd01475 4 DLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETGTMT 83 (224)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEecccccCCHHHHHHHHHhCcCCCCCChH
Confidence 577899999999998888888755544 6565443 56789999999986432 2 234444444455553 5788999
Q ss_pred HHHHHHHHHHHH--hCCCChh--hccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 175 QEVFDLILEVAV--NGNLKPE--QMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 175 ~~vf~~IL~~A~--k~~l~~e--~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
.++++..++.+- ..+.++. +.++-++||||+.-. ...+.+.++.++.|..
T Consensus 84 g~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~--------~~~~~~a~~lk~~gv~ 137 (224)
T cd01475 84 GLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQ--------DDVSEVAAKARALGIE 137 (224)
T ss_pred HHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCc--------ccHHHHHHHHHHCCcE
Confidence 999887776542 2333332 247788999999532 1345566777887766
No 38
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=98.13 E-value=2.2e-05 Score=70.20 Aligned_cols=106 Identities=17% Similarity=0.109 Sum_probs=65.8
Q ss_pred cceEEEEeCCCCCCCC-------hHHHHHHHHHHHhhhccC--CcccEEEEeCCCceEEEecCCCHHHHH-HHhhcCCcc
Q 045156 100 RNCKAICDVSGSVHGT-------PLEVSVALGLLVSELSEE--PWKGKLITFGEKPELHLVEGDDLKSKT-RFVSNVNWD 169 (319)
Q Consensus 100 ~~~I~v~DvSGSM~g~-------p~dvaiaL~lllae~~~~--~~~~~~ItFs~~p~~~~l~g~~l~ekv-~~i~~~~~g 169 (319)
.++++++|+||||... .++.|..+..-+..+... +-+..++.|++++... ..-+ .+.+ +.+.+...+
T Consensus 3 ~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~--~~~~-~~~v~~~~~~~~p~ 79 (199)
T cd01457 3 RDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFRRY--DNVN-SSKVDQLFAENSPD 79 (199)
T ss_pred cCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCcccc--CCcC-HHHHHHHHhcCCCC
Confidence 4689999999999853 467777666666555432 2334578898876432 1112 3333 334566667
Q ss_pred ccccHHHHHHHHHHHHHhCCCChhhc--cceEEEEecCccc
Q 045156 170 MNTDFQEVFDLILEVAVNGNLKPEQM--IKRLFVFSDMEFD 208 (319)
Q Consensus 170 ~nTnl~~vf~~IL~~A~k~~l~~e~m--pk~v~V~SDmqFd 208 (319)
++|++..++..+++......-..... +.-|+||||++.+
T Consensus 80 G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~ 120 (199)
T cd01457 80 GGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPD 120 (199)
T ss_pred CcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCC
Confidence 88999999987764322210000112 4789999999875
No 39
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=98.11 E-value=4.7e-05 Score=71.88 Aligned_cols=124 Identities=18% Similarity=0.145 Sum_probs=70.6
Q ss_pred cceEEEEeCCCCCCCChHHHHHHHHHHH-hhhccCCcccEEEEeCCCceEEEecCCCHHHHHHHhhcCCc----------
Q 045156 100 RNCKAICDVSGSVHGTPLEVSVALGLLV-SELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNW---------- 168 (319)
Q Consensus 100 ~~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~~~~~~~~ItFs~~p~~~~l~g~~l~ekv~~i~~~~~---------- 168 (319)
-++++++|+||||.+. +..+...++-+ ...-.+--+-.+++|++.+.+..--..+...-.+.+.+...
T Consensus 54 ~~vvlvlD~SgSM~~~-~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~~~~~t~~~~~l~~~l~~l~~~~~~~~~~~~ 132 (296)
T TIGR03436 54 LTVGLVIDTSGSMRND-LDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRLLQDFTSDPRLLEAALNRLKPPLRTDYNSSG 132 (296)
T ss_pred ceEEEEEECCCCchHH-HHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeEeecCCCCHHHHHHHHHhccCCCcccccccc
Confidence 4688899999999974 44444433333 33222334668999999887542212233333333444433
Q ss_pred -----cccccHHHHHHHH-HHHHHhCCCChhhc--cceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 169 -----DMNTDFQEVFDLI-LEVAVNGNLKPEQM--IKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 169 -----g~nTnl~~vf~~I-L~~A~k~~l~~e~m--pk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
+++|+++.++.+. ++...+. +. .+ .+.|++|||++-+. + ...++.+.+.-++++..
T Consensus 133 ~~~~~~g~T~l~~al~~aa~~~~~~~-~~--~~p~rk~iIllTDG~~~~-~----~~~~~~~~~~~~~~~v~ 196 (296)
T TIGR03436 133 AFVRDGGGTALYDAITLAALEQLANA-LA--GIPGRKALIVISDGGDNR-S----RDTLERAIDAAQRADVA 196 (296)
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHh-hc--CCCCCeEEEEEecCCCcc-h----HHHHHHHHHHHHHcCCE
Confidence 7899999997543 3333222 11 12 36799999995321 1 23566665555665544
No 40
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=98.07 E-value=0.00011 Score=66.43 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=81.8
Q ss_pred CcceEEEEeCCCCCCCChHHHHHHHH-HHHhhhcc---C---C--cccEEEEeCCCceEEE-ec-CCCHHHHHHHhhc--
Q 045156 99 LRNCKAICDVSGSVHGTPLEVSVALG-LLVSELSE---E---P--WKGKLITFGEKPELHL-VE-GDDLKSKTRFVSN-- 165 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~dvaiaL~-lllae~~~---~---~--~~~~~ItFs~~p~~~~-l~-g~~l~ekv~~i~~-- 165 (319)
.-+.+.++|+||||....++-++... -++..+.- . | -+-.+|+|++.|+++- +. ..+..+..+.+..
T Consensus 19 ~~DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L~d~~~~~~~~~ai~~~~ 98 (193)
T cd01477 19 WLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLNDLQSFDDLYSQIQGSL 98 (193)
T ss_pred eeeEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEecccccCHHHHHHHHHHHh
Confidence 34578899999999866565554433 33444332 1 2 4668899999998654 33 2455555555542
Q ss_pred --CCccccccHHHHHHHHHHHHHhC--CCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 166 --VNWDMNTDFQEVFDLILEVAVNG--NLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 166 --~~~g~nTnl~~vf~~IL~~A~k~--~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
..-+++||+.+++...++.-... +-+ ...+|-+||+||++-+..+ .+...+.++.++.|-.
T Consensus 99 ~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R-~~v~kvvIllTDg~~~~~~-----~~~~~~a~~l~~~GI~ 163 (193)
T cd01477 99 TDVSSTNASYLDTGLQAAEQMLAAGKRTSR-ENYKKVVIVFASDYNDEGS-----NDPRPIAARLKSTGIA 163 (193)
T ss_pred hccccCCcchHHHHHHHHHHHHHhhhcccc-CCCCeEEEEEecCccCCCC-----CCHHHHHHHHHHCCCE
Confidence 33456899999998877775532 222 3467889999988544321 2345567778888876
No 41
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=98.00 E-value=4.2e-05 Score=83.05 Aligned_cols=106 Identities=12% Similarity=0.022 Sum_probs=69.4
Q ss_pred ceEEEEeCCCCCCC-ChHHHHHH-HHHHHhhhccCCcccEEEEeCCCceEE-Ee---cCCCHHHHHHHhhcCCccccccH
Q 045156 101 NCKAICDVSGSVHG-TPLEVSVA-LGLLVSELSEEPWKGKLITFGEKPELH-LV---EGDDLKSKTRFVSNVNWDMNTDF 174 (319)
Q Consensus 101 ~~I~v~DvSGSM~g-~p~dvaia-L~lllae~~~~~~~~~~ItFs~~p~~~-~l---~g~~l~ekv~~i~~~~~g~nTnl 174 (319)
.+++|+|+||||.+ .+++.+.. +..++.++-.+--+-.+|+|++++.++ .+ ...+-++.+.......-+++|++
T Consensus 306 ~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLVtFsssA~vl~pLt~Its~~dr~aL~~~L~~~A~GGT~I 385 (863)
T TIGR00868 306 IVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMVTFDSAAYIKNELIQITSSAERDALTANLPTAASGGTSI 385 (863)
T ss_pred eEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEECCceeEeeccccCCcHHHHHHHHHhhccccCCCCcH
Confidence 36778999999986 57776543 333444443333566889999998863 22 22223333333333346789999
Q ss_pred HHHHHHHHHHHHhCCCChhhccceEEEEecCccc
Q 045156 175 QEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFD 208 (319)
Q Consensus 175 ~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd 208 (319)
..++.+.++...+.+- ..-.+.|+++||++-+
T Consensus 386 ~~GL~~Alq~L~~~~~--~~~~~~IILLTDGedn 417 (863)
T TIGR00868 386 CSGLKAAFQVIKKSYQ--STDGSEIVLLTDGEDN 417 (863)
T ss_pred HHHHHHHHHHHHhccc--ccCCCEEEEEeCCCCC
Confidence 9999988887665431 1236789999999743
No 42
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.99 E-value=5.8e-05 Score=78.58 Aligned_cols=127 Identities=11% Similarity=0.034 Sum_probs=80.8
Q ss_pred CcceEEEEeCCCCCCC-ChHHHHHHHH-HHHhhhccCC--cccEEEEeCCCceEE-Eec-CC-----CHHHHHHHhhc-C
Q 045156 99 LRNCKAICDVSGSVHG-TPLEVSVALG-LLVSELSEEP--WKGKLITFGEKPELH-LVE-GD-----DLKSKTRFVSN-V 166 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g-~p~dvaiaL~-lllae~~~~~--~~~~~ItFs~~p~~~-~l~-g~-----~l~ekv~~i~~-~ 166 (319)
.-+.++++|+||||.- ..++-++.++ -++..+...+ .+-.+++||++++.+ .+. +. .+..+|..+.. .
T Consensus 42 ~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~s~Dk~~aL~~I~sL~~~~ 121 (576)
T PTZ00441 42 EVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASKDKEQALIIVKSLRKTY 121 (576)
T ss_pred CceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCccccHHHHHHHHHHHHhhc
Confidence 4468899999999973 3445444433 3334444333 444458999999844 442 22 35555655543 3
Q ss_pred CccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 167 NWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 167 ~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
..|++|++.+|+..+.+.....+ ..+..++-||||||+.-+.. ....+. .+++++.|.+
T Consensus 122 ~pgGgTnig~AL~~Aae~L~sr~-~R~nvpKVVILLTDG~sns~-----~dvlea-Aq~LR~~GVe 180 (576)
T PTZ00441 122 LPYGKTNMTDALLEVRKHLNDRV-NRENAIQLVILMTDGIPNSK-----YRALEE-SRKLKDRNVK 180 (576)
T ss_pred cCCCCccHHHHHHHHHHHHhhcc-cccCCceEEEEEecCCCCCc-----ccHHHH-HHHHHHCCCE
Confidence 56789999999998877755432 34557899999999984321 122233 3568887877
No 43
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=97.99 E-value=4.8e-05 Score=69.88 Aligned_cols=125 Identities=18% Similarity=0.235 Sum_probs=78.4
Q ss_pred ceEEEEeCCCCCCCC--------hHHHHHHHHHHHhhhccCCcccEEEEeCCCceE-EEecCCCHHHHHHHhhcC--Ccc
Q 045156 101 NCKAICDVSGSVHGT--------PLEVSVALGLLVSELSEEPWKGKLITFGEKPEL-HLVEGDDLKSKTRFVSNV--NWD 169 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~--------p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~-~~l~g~~l~ekv~~i~~~--~~g 169 (319)
.+..|+|.||||++. -.+=.++||.- -.+-=.--+.+||.++.- -.+.-.++...++.+... .|+
T Consensus 3 rV~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~----~DdDG~i~v~~Fs~~~~~~~~vt~~~~~~~v~~~~~~~~~~~ 78 (200)
T PF10138_consen 3 RVYLVLDISGSMRPLYKDGTVQRVVERILALAAQ----FDDDGEIDVWFFSTEFDRLPDVTLDNYEGYVDELHAGLPDWG 78 (200)
T ss_pred EEEEEEeCCCCCchhhhCccHHHHHHHHHHHHhh----cCCCCceEEEEeCCCCCcCCCcCHHHHHHHHHHHhccccccC
Confidence 356799999999862 22333344432 222223478999997763 333445666666665321 233
Q ss_pred --ccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHh-cCCCCCCCeEEEEeCCCC
Q 045156 170 --MNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTE-KGYGSAVPEIIFWNLRHS 246 (319)
Q Consensus 170 --~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~-~Gy~~~~P~ivfWNl~~~ 246 (319)
|+||...|.+.+++.-.+.+ +...|..|+++||++.+.. ..+++.-++ ++++ +||=.=|-
T Consensus 79 ~~G~t~y~~vm~~v~~~y~~~~--~~~~P~~VlFiTDG~~~~~---------~~~~~~i~~as~~p------ifwqFVgi 141 (200)
T PF10138_consen 79 RMGGTNYAPVMEDVLDHYFKRE--PSDAPALVLFITDGGPDDR---------RAIEKLIREASDEP------IFWQFVGI 141 (200)
T ss_pred CCCCcchHHHHHHHHHHHhhcC--CCCCCeEEEEEecCCccch---------HHHHHHHHhccCCC------eeEEEEEe
Confidence 45999999999999987555 3457999999999987531 113333333 4444 89987664
No 44
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=97.77 E-value=0.00022 Score=65.20 Aligned_cols=103 Identities=20% Similarity=0.384 Sum_probs=69.9
Q ss_pred ceEEEEeCCCCCCCChHHH-HHHHHHHHhhhccCCcc-----cEEEEeCCCceEEEecCCCHHHHHHHh-hcCCcccccc
Q 045156 101 NCKAICDVSGSVHGTPLEV-SVALGLLVSELSEEPWK-----GKLITFGEKPELHLVEGDDLKSKTRFV-SNVNWDMNTD 173 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dv-aiaL~lllae~~~~~~~-----~~~ItFs~~p~~~~l~g~~l~ekv~~i-~~~~~g~nTn 173 (319)
.|+.++|+||||.|.|++. =.+|-++++++-++|.+ -.+|||.+.... .++ +.+..++- .....+|+|-
T Consensus 5 P~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~-~~p---f~~~~nF~~p~L~a~GgT~ 80 (207)
T COG4245 5 PCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARV-IQP---FTDAANFNPPILTAQGGTP 80 (207)
T ss_pred CEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceE-Eec---hhhHhhcCCCceecCCCCc
Confidence 5888999999999998875 45667778999999865 368999993332 222 22223322 4556789999
Q ss_pred HHHHHHHHHHHHHhCC-----CChhhccceEEEEecCcc
Q 045156 174 FQEVFDLILEVAVNGN-----LKPEQMIKRLFVFSDMEF 207 (319)
Q Consensus 174 l~~vf~~IL~~A~k~~-----l~~e~mpk~v~V~SDmqF 207 (319)
+.++|.++++.-.... -...+-=.-+|++||++=
T Consensus 81 lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~P 119 (207)
T COG4245 81 LGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEP 119 (207)
T ss_pred hHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCc
Confidence 9999998887653220 011122236999999965
No 45
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=97.69 E-value=0.0012 Score=58.97 Aligned_cols=126 Identities=16% Similarity=0.207 Sum_probs=77.5
Q ss_pred CCcceEEEEeCCCCCCC-----ChHHHHHHHHHHHhh-h-ccCC-cccEEEEe-CCCceEEEecCCCHHHHHHHhhcC-C
Q 045156 98 KLRNCKAICDVSGSVHG-----TPLEVSVALGLLVSE-L-SEEP-WKGKLITF-GEKPELHLVEGDDLKSKTRFVSNV-N 167 (319)
Q Consensus 98 ~~~~~I~v~DvSGSM~g-----~p~dvaiaL~lllae-~-~~~~-~~~~~ItF-s~~p~~~~l~g~~l~ekv~~i~~~-~ 167 (319)
-..+.++++|+|+||.. +.++.|+-...-+.+ + ...| -+-.+|+| +..+.++.=-..+...-+..+... .
T Consensus 2 ~~r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~D~~~~~~~L~~~~~ 81 (183)
T cd01453 2 IMRHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTGNPRKHIQALKTARE 81 (183)
T ss_pred ceeEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCCCHHHHHHHhhcccC
Confidence 35678899999999985 578888877765543 2 2222 35689999 677765433233333333434333 4
Q ss_pred ccccccHHHHHHHHHHHHHhCCCChhhccce-EEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 168 WDMNTDFQEVFDLILEVAVNGNLKPEQMIKR-LFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 168 ~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~-v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
-+++|+++.++...++...... ..-.++ |+|+||++- + ++ ..+..+.++.++.|..
T Consensus 82 ~~G~t~l~~aL~~A~~~l~~~~---~~~~~~iiil~sd~~~--~--~~--~~~~~~~~~l~~~~I~ 138 (183)
T cd01453 82 CSGEPSLQNGLEMALESLKHMP---SHGSREVLIIFSSLST--C--DP--GNIYETIDKLKKENIR 138 (183)
T ss_pred CCCchhHHHHHHHHHHHHhcCC---ccCceEEEEEEcCCCc--C--Ch--hhHHHHHHHHHHcCcE
Confidence 5678999999998888765321 111243 556676531 1 11 2355677888887754
No 46
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.56 E-value=0.0018 Score=61.92 Aligned_cols=122 Identities=19% Similarity=0.264 Sum_probs=76.8
Q ss_pred CCcceEEEEeCCCCCCC-----ChHHHHHHHHHHH---hhhccCCcccEEEEeCCCceE-EEecC--CCHHHHHHHhhcC
Q 045156 98 KLRNCKAICDVSGSVHG-----TPLEVSVALGLLV---SELSEEPWKGKLITFGEKPEL-HLVEG--DDLKSKTRFVSNV 166 (319)
Q Consensus 98 ~~~~~I~v~DvSGSM~g-----~p~dvaiaL~lll---ae~~~~~~~~~~ItFs~~p~~-~~l~g--~~l~ekv~~i~~~ 166 (319)
..-..++++|+|.||.- .+++ |+.++. +.+..+ .-.++.|+++|.+ |.+.. .. ...++.+...
T Consensus 59 r~~qIvlaID~S~SM~~~~~~~~ale---ak~lIs~al~~Le~g--~vgVv~Fg~~~~~v~Plt~d~~~-~a~~~~l~~~ 132 (266)
T cd01460 59 RDYQILIAIDDSKSMSENNSKKLALE---SLCLVSKALTLLEVG--QLGVCSFGEDVQILHPFDEQFSS-QSGPRILNQF 132 (266)
T ss_pred cCceEEEEEecchhcccccccccHHH---HHHHHHHHHHhCcCC--cEEEEEeCCCceEeCCCCCCchh-hHHHHHhCcc
Confidence 46678899999999963 3455 344433 333333 4588999999984 33322 22 3445545544
Q ss_pred Ccc-ccccHHHHHHHHHHHHHhCCCChhh--ccceEEEEecCc--cccccCCCCcchHHHHHHHHHhcCCC
Q 045156 167 NWD-MNTDFQEVFDLILEVAVNGNLKPEQ--MIKRLFVFSDME--FDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 167 ~~g-~nTnl~~vf~~IL~~A~k~~l~~e~--mpk~v~V~SDmq--Fd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
.++ .+||+.+++...+..-...+..+.. .-+-++|+||++ |++ ..-..+.+++++.|.-
T Consensus 133 ~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e-------~~~~~~~r~a~e~~i~ 196 (266)
T cd01460 133 TFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSE-------GAQKVRLREAREQNVF 196 (266)
T ss_pred cCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCc-------cHHHHHHHHHHHcCCe
Confidence 444 6799999999887776544321111 226799999999 553 2233457778887765
No 47
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.55 E-value=0.0013 Score=57.72 Aligned_cols=124 Identities=10% Similarity=0.091 Sum_probs=80.0
Q ss_pred ceEEEEeCCCCCCCChHHHHHHHHHHH-hhhccCC--cccEEEEeCCCceEE-Eec-CCCHHHHHHHhhcCCc-cc-ccc
Q 045156 101 NCKAICDVSGSVHGTPLEVSVALGLLV-SELSEEP--WKGKLITFGEKPELH-LVE-GDDLKSKTRFVSNVNW-DM-NTD 173 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~~~--~~~~~ItFs~~p~~~-~l~-g~~l~ekv~~i~~~~~-g~-nTn 173 (319)
+.+.++|.||||....++-.+....-+ ..++-+| -+-.+|+||+.|+++ .+. -.+..+-.+.+.++.+ |+ .||
T Consensus 2 DivfllD~S~Si~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~~~l~~~~~~~~l~~~i~~i~~~~g~~t~ 81 (165)
T cd01481 2 DIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRLRLRGGSQLN 81 (165)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEEEeccccCCHHHHHHHHHhcccCCCCccc
Confidence 467899999999877777666644333 5555333 566889999999854 232 2344444455556644 44 589
Q ss_pred HHHHHHHHHHHH--HhCCCCh-hhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 174 FQEVFDLILEVA--VNGNLKP-EQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 174 l~~vf~~IL~~A--~k~~l~~-e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
..+|++.+.+.. ..++-++ +..||-++|+||++-+ .......+.-+++|-.
T Consensus 82 t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~--------d~~~~~a~~lr~~gv~ 135 (165)
T cd01481 82 TGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQ--------DDVERPAVALKRAGIV 135 (165)
T ss_pred HHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCc--------chHHHHHHHHHHCCcE
Confidence 999998766543 2233332 4578999999999633 1244455666777755
No 48
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.47 E-value=0.00017 Score=71.53 Aligned_cols=99 Identities=25% Similarity=0.382 Sum_probs=68.4
Q ss_pred CcceEEEEeCCCCCCC-ChHHHHHHHHHHHhhhccCCcccEEEEeCCCce--EEEecCCCHHHHHHHhhcC--Ccccccc
Q 045156 99 LRNCKAICDVSGSVHG-TPLEVSVALGLLVSELSEEPWKGKLITFGEKPE--LHLVEGDDLKSKTRFVSNV--NWDMNTD 173 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g-~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~--~~~l~g~~l~ekv~~i~~~--~~g~nTn 173 (319)
-...|++|||||||++ .+.- |.++ .-+.+...+.++.+|+.+-. .+.+...++.+.++.+... .|+|+|.
T Consensus 218 ~~~lvvL~DVSGSm~~ys~~~----L~l~-hAl~q~~~R~~~F~F~TRLt~vT~~l~~rD~~~Al~~~~a~v~dw~ggTr 292 (395)
T COG3552 218 KPPLVVLCDVSGSMSGYSRIF----LHLL-HALRQQRSRVHVFLFGTRLTRVTHMLRERDLEDALRRLSAQVKDWDGGTR 292 (395)
T ss_pred CCCeEEEEecccchhhhHHHH----HHHH-HHHHhcccceeEEEeechHHHHHHHhccCCHHHHHHHHHhhcccccCCcc
Confidence 4456889999999997 3322 2222 23444556778999998543 2333456888888888443 8999999
Q ss_pred HHHHHHHHHHHHHhCCCChhhccceEEEEecC
Q 045156 174 FQEVFDLILEVAVNGNLKPEQMIKRLFVFSDM 205 (319)
Q Consensus 174 l~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDm 205 (319)
+...+...+..=--+-|.+. ..|+|+||+
T Consensus 293 ig~tl~aF~~~~~~~~L~~g---A~VlilsDg 321 (395)
T COG3552 293 IGNTLAAFLRRWHGNVLSGG---AVVLILSDG 321 (395)
T ss_pred hhHHHHHHHccccccccCCc---eEEEEEecc
Confidence 99998877766444555552 479999999
No 49
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=97.12 E-value=0.007 Score=54.92 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=74.5
Q ss_pred ceEEEEeCCCCCC----C---ChHHHHHHHHHHHhhh---ccCCcccEEEEeCCCc--------eE---EEec--CCCHH
Q 045156 101 NCKAICDVSGSVH----G---TPLEVSVALGLLVSEL---SEEPWKGKLITFGEKP--------EL---HLVE--GDDLK 157 (319)
Q Consensus 101 ~~I~v~DvSGSM~----g---~p~dvaiaL~lllae~---~~~~~~~~~ItFs~~p--------~~---~~l~--g~~l~ 157 (319)
.++.++|+|+||. | .+++.|+....-+-+. +.+-=.-.+|.|+... .+ ..+. .....
T Consensus 3 ~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l~~~~~~~l 82 (218)
T cd01458 3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPGAERV 82 (218)
T ss_pred EEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecCCCCCHHHH
Confidence 4678899999994 2 5677777766666332 2222455788999874 11 1121 22223
Q ss_pred HHHHHhhcCC---------ccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHh
Q 045156 158 SKTRFVSNVN---------WDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTE 228 (319)
Q Consensus 158 ekv~~i~~~~---------~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~ 228 (319)
+.+..+.... -+.+|++..|+...++.-... ++...-++||+|||.+-.......-......+.+.+++
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~--~~~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~ 160 (218)
T cd01458 83 EDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKG--KKKKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKD 160 (218)
T ss_pred HHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhc--cccccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 3333322211 246899999998877776541 22335789999999865432111101233345566666
Q ss_pred cCCC
Q 045156 229 KGYG 232 (319)
Q Consensus 229 ~Gy~ 232 (319)
.|-.
T Consensus 161 ~gI~ 164 (218)
T cd01458 161 KGIE 164 (218)
T ss_pred CCcE
Confidence 6665
No 50
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=97.00 E-value=0.019 Score=52.18 Aligned_cols=130 Identities=16% Similarity=0.165 Sum_probs=81.8
Q ss_pred CcceEEEEeCCCCCCC-----ChHHHHHHHHHHH-hhh-ccCC-cccEEEEeCC-CceEEEecCCCHHHHHHHhhcCCcc
Q 045156 99 LRNCKAICDVSGSVHG-----TPLEVSVALGLLV-SEL-SEEP-WKGKLITFGE-KPELHLVEGDDLKSKTRFVSNVNWD 169 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g-----~p~dvaiaL~lll-ae~-~~~~-~~~~~ItFs~-~p~~~~l~g~~l~ekv~~i~~~~~g 169 (319)
++-+++++|+|.||.- +.++.++-....+ .+. ...| -+-.+|+|.. .+.++.-...+...-...+.+.+.+
T Consensus 3 ~ea~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT~D~~~~~~~L~~i~~~ 82 (187)
T cd01452 3 LEATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTNDQGKILSKLHDVQPK 82 (187)
T ss_pred ceEEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCCCCHHHHHHHHHhCCCC
Confidence 4568899999999974 5688877555544 121 1222 3668999999 7776555556666666666777788
Q ss_pred ccccHHHHHHHHHHHHHhCCCChhhcc-ce-EEEEe-cCccccccCCCCcchHHHHHHHHHhcCCCCCCCeEEE
Q 045156 170 MNTDFQEVFDLILEVAVNGNLKPEQMI-KR-LFVFS-DMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIF 240 (319)
Q Consensus 170 ~nTnl~~vf~~IL~~A~k~~l~~e~mp-k~-v~V~S-DmqFd~a~~~~w~t~~e~i~~ky~~~Gy~~~~P~ivf 240 (319)
++|+|..+++..+..-+... ..-- +| |+|++ |.+-|. .+...+.++.++.|-. +--|-|
T Consensus 83 g~~~l~~AL~~A~~~L~~~~---~~~~~~rivi~v~S~~~~d~-------~~i~~~~~~lkk~~I~--v~vI~~ 144 (187)
T cd01452 83 GKANFITGIQIAQLALKHRQ---NKNQKQRIVAFVGSPIEEDE-------KDLVKLAKRLKKNNVS--VDIINF 144 (187)
T ss_pred CcchHHHHHHHHHHHHhcCC---CcCCcceEEEEEecCCcCCH-------HHHHHHHHHHHHcCCe--EEEEEe
Confidence 99999999997776543211 1112 24 44444 445442 2344466778888887 444433
No 51
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.77 E-value=0.0068 Score=67.74 Aligned_cols=109 Identities=13% Similarity=0.180 Sum_probs=75.0
Q ss_pred cCCCcceEEEEeCCCCCCCChHHHHHHHHHHH-hhhccCCcccEEEEeCCCceEEEe-------cC--CCHHHHHHHhhc
Q 045156 96 EGKLRNCKAICDVSGSVHGTPLEVSVALGLLV-SELSEEPWKGKLITFGEKPELHLV-------EG--DDLKSKTRFVSN 165 (319)
Q Consensus 96 ~g~~~~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~~~~~~~~ItFs~~p~~~~l-------~g--~~l~ekv~~i~~ 165 (319)
..+-.+.++++|+||||+|..+++|++....+ .-|...-| -.++||++.-+.+.- ++ .++.+-.+.+..
T Consensus 222 At~pKdiviLlD~SgSm~g~~~~lak~tv~~iLdtLs~~Df-vni~tf~~~~~~v~pc~~~~lvqAt~~nk~~~~~~i~~ 300 (1104)
T KOG2353|consen 222 ATSPKDIVILLDVSGSMSGLRLDLAKQTVNEILDTLSDNDF-VNILTFNSEVNPVSPCFNGTLVQATMRNKKVFKEAIET 300 (1104)
T ss_pred cCCccceEEEEeccccccchhhHHHHHHHHHHHHhcccCCe-EEEEeeccccCcccccccCceeecchHHHHHHHHHHhh
Confidence 34566779999999999999999999999888 55666643 467999999887662 11 233333333444
Q ss_pred CCccccccHHHHHHHHHHHHHhCCCChhh-----ccceEEEEecC
Q 045156 166 VNWDMNTDFQEVFDLILEVAVNGNLKPEQ-----MIKRLFVFSDM 205 (319)
Q Consensus 166 ~~~g~nTnl~~vf~~IL~~A~k~~l~~e~-----mpk~v~V~SDm 205 (319)
...-+.||+.++|+..+++-.+.+..--. .=+-+++|+|+
T Consensus 301 l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG 345 (1104)
T KOG2353|consen 301 LDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDG 345 (1104)
T ss_pred hccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecC
Confidence 55667788888887766665544433322 34568889987
No 52
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.016 Score=58.01 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=104.2
Q ss_pred CCcceEEEEeCCCCCCC----Ch---HHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEec---CCCHHHHHHHhhcCC
Q 045156 98 KLRNCKAICDVSGSVHG----TP---LEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVE---GDDLKSKTRFVSNVN 167 (319)
Q Consensus 98 ~~~~~I~v~DvSGSM~g----~p---~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~---g~~l~ekv~~i~~~~ 167 (319)
...++..++||||||.+ .| -++|-++.|..-.--. -.++..|++. +...+ .-.|.+-..++.+.+
T Consensus 426 tgkr~~laldvs~sm~~rv~~s~ln~reaaa~m~linlhnea---d~~~vaf~d~--lte~pftkd~kigqv~~~~nni~ 500 (598)
T KOG4465|consen 426 TGKRFCLALDVSASMNQRVLGSILNAREAAAAMCLINLHNEA---DSRCVAFCDE--LTECPFTKDMKIGQVLDAMNNID 500 (598)
T ss_pred CCceEEEEEecchhhhhhhhccccchHHHHhhhheeeecccc---ceeEEEeccc--cccCCCcccccHHHHHHHHhcCC
Confidence 45678889999999985 33 4455555544322222 3478899984 44443 356777777788888
Q ss_pred ccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCCCCCCeEEEEeCCCCC
Q 045156 168 WDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRHSK 247 (319)
Q Consensus 168 ~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~~~~P~ivfWNl~~~~ 247 (319)
.|+ ||-. +=.--|.++|++-+ -.|||||-+-+...- .-+++|++.-++.|.. -.+++---..+++
T Consensus 501 ~g~-tdcg----lpm~wa~ennlk~d----vfii~tdndt~agei----hp~~aik~yrea~~i~--dakliv~amqa~d 565 (598)
T KOG4465|consen 501 AGG-TDCG----LPMIWAQENNLKAD----VFIIFTDNDTFAGEI----HPAEAIKEYREAMDIH--DAKLIVCAMQAND 565 (598)
T ss_pred CCC-CccC----CceeehhhcCCCcc----EEEEEecCccccccc----CHHHHHHHHHHhcCCC--cceEEEEEeecCC
Confidence 885 4432 11234778887664 478899986654322 4577776644566666 5788877776665
Q ss_pred CCCcccCCCCeEEEeccCHHHHHHHHh
Q 045156 248 STPVPEGQEGVALVSGFSKILIKLFLE 274 (319)
Q Consensus 248 ~~Pv~~~~~gv~LVSG~S~~i~k~~l~ 274 (319)
-.-...++.|..=+.||-...+..+-+
T Consensus 566 ~siadp~dagmldi~gfdsa~~~iihe 592 (598)
T KOG4465|consen 566 FSIADPDDAGMLDICGFDSAALDIIHE 592 (598)
T ss_pred ceecCcccccceeeccccchHHHHHHH
Confidence 555566888999999998888877654
No 53
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=96.53 E-value=0.012 Score=54.87 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=34.7
Q ss_pred cceEEEEeCCCCCCCChHHHHHHHHHHHhhhccC-CcccEEEEeCCC
Q 045156 100 RNCKAICDVSGSVHGTPLEVSVALGLLVSELSEE-PWKGKLITFGEK 145 (319)
Q Consensus 100 ~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~-~~~~~~ItFs~~ 145 (319)
.-+-+++|-||||.|.|+.+|+..+-++++-.+. -.+..++-|+..
T Consensus 13 ~~VtlLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~ 59 (219)
T PF11775_consen 13 TVVTLLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTTR 59 (219)
T ss_pred eEEEEEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecC
Confidence 3344679999999999999998777777554433 367788888876
No 54
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.36 E-value=0.025 Score=55.56 Aligned_cols=105 Identities=24% Similarity=0.345 Sum_probs=60.4
Q ss_pred CcceEEEEeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEecCCCHHHHHHHhhc-------CCcccc
Q 045156 99 LRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSN-------VNWDMN 171 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~g~~l~ekv~~i~~-------~~~g~n 171 (319)
+...+|++|+||||....++.+++=-.=+. +. +|. ++--+..++.....-.+++ ..=||+
T Consensus 261 l~~i~vaVDtSGS~~d~ei~a~~~Ei~~Il---~~--~~~--------eltli~~D~~v~~~~~~r~g~~~~~~~~ggG~ 327 (396)
T COG3864 261 LIKIVVAVDTSGSMTDAEIDAAMTEIFDIL---KN--KNY--------ELTLIECDNIVRRMYRVRKGRDMKKKLDGGGG 327 (396)
T ss_pred hhheEEEEecCCCccHHHHHHHHHHHHHHH---hC--CCc--------EEEEEEecchhhhhhccCCcccCCcccCCCCC
Confidence 556788999999999877766654322222 22 222 3222322222211111211 233666
Q ss_pred ccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCCCCCCeEEEEeCCCC
Q 045156 172 TDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRHS 246 (319)
Q Consensus 172 Tnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~~~~P~ivfWNl~~~ 246 (319)
|||+-||+.+=+. .|-.-+++|||+-=|+.- -+ -|+...|=|.+.
T Consensus 328 Tdf~Pvfeylek~---------~~~~~lIyfTDG~gd~p~------------------~~---r~~~~lwVl~~~ 372 (396)
T COG3864 328 TDFSPVFEYLEKN---------RMECFLIYFTDGMGDQPL------------------VF---RPKVLLWVLTGA 372 (396)
T ss_pred ccccHHHHHHHhh---------cccceEEEEccCCCCccc------------------cc---CCcceEEEecCC
Confidence 9999999987332 233679999999665421 12 377788888663
No 55
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=95.33 E-value=0.1 Score=47.79 Aligned_cols=102 Identities=19% Similarity=0.252 Sum_probs=51.0
Q ss_pred ceEEEEeCCCCCC------C---ChHHHHHHHHHHHhhhccCCcccEEEE-eCCCc--eEEEecC--CCHH---HHHHHh
Q 045156 101 NCKAICDVSGSVH------G---TPLEVSVALGLLVSELSEEPWKGKLIT-FGEKP--ELHLVEG--DDLK---SKTRFV 163 (319)
Q Consensus 101 ~~I~v~DvSGSM~------g---~p~dvaiaL~lllae~~~~~~~~~~It-Fs~~p--~~~~l~g--~~l~---ekv~~i 163 (319)
+.++++|+||||+ | +.+++++...--+.+.-+. +.+-.|- |++.+ -++.+.. ..-. +-++.+
T Consensus 2 ~l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~f~~~-r~~DriG~~g~~~~~~~lt~d~p~t~d~~~~~~l~~~ 80 (191)
T cd01455 2 RLKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDGFEDK-IQYDIIGHSGDGPCVPFVKTNHPPKNNKERLETLKMM 80 (191)
T ss_pred ceEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHHHHHh-CccceeeecCcccccCccccccCcccchhHHHHHHHH
Confidence 4678999999993 3 4677777765555422221 1221122 44443 2322211 1111 122222
Q ss_pred -hcCCcc---ccccHHHHHHHHHHHHH-hCCCChhhccceEEEEecCcccc
Q 045156 164 -SNVNWD---MNTDFQEVFDLILEVAV-NGNLKPEQMIKRLFVFSDMEFDE 209 (319)
Q Consensus 164 -~~~~~g---~nTnl~~vf~~IL~~A~-k~~l~~e~mpk~v~V~SDmqFd~ 209 (319)
.....| -+|- .++-+.+++.. +.. .-.+-||++||++.+.
T Consensus 81 l~~~q~g~ag~~Ta--dAi~~av~rl~~~~~----a~~kvvILLTDG~n~~ 125 (191)
T cd01455 81 HAHSQFCWSGDHTV--EATEFAIKELAAKED----FDEAIVIVLSDANLER 125 (191)
T ss_pred HHhcccCccCccHH--HHHHHHHHHHHhcCc----CCCcEEEEEeCCCcCC
Confidence 334443 4555 44444454443 322 2257899999997654
No 56
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=95.31 E-value=0.069 Score=54.32 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=66.5
Q ss_pred CcceEE--EEeCCCCCCCChHHHHHHHHHHHhhhccCCccc---EEEEeCCCceEEEecCCCHHHHHHHhhcCCcccccc
Q 045156 99 LRNCKA--ICDVSGSVHGTPLEVSVALGLLVSELSEEPWKG---KLITFGEKPELHLVEGDDLKSKTRFVSNVNWDMNTD 173 (319)
Q Consensus 99 ~~~~I~--v~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~---~~ItFs~~p~~~~l~g~~l~ekv~~i~~~~~g~nTn 173 (319)
..++++ +-||||||....-++|....+++-.--+.-+.+ .||..+...+= ++ | +.+-...-+|+|-
T Consensus 244 ~s~AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~~Y~~Ve~vfI~H~t~A~E--Vd-----E--e~FF~~~esGGT~ 314 (421)
T PF04285_consen 244 ESNAVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRRKYENVEIVFIRHHTEAKE--VD-----E--EEFFHSRESGGTR 314 (421)
T ss_pred cCcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceEE--ec-----H--HHhcccCCCCCeE
Confidence 345554 469999999999999998888874444333444 44544443322 21 2 2244556678999
Q ss_pred HHHHHHHHHHHHHhCCCChhhccceEEEEecCccc
Q 045156 174 FQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFD 208 (319)
Q Consensus 174 l~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd 208 (319)
+-.|++++++.-. ...++++-==++|-+||+.=|
T Consensus 315 vSSA~~l~~~ii~-erypp~~wNiY~~~~SDGDN~ 348 (421)
T PF04285_consen 315 VSSAYELALEIIE-ERYPPSDWNIYVFHASDGDNW 348 (421)
T ss_pred ehHHHHHHHHHHH-hhCChhhceeeeEEcccCccc
Confidence 9999999988854 344666666688889999444
No 57
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=94.56 E-value=0.061 Score=54.89 Aligned_cols=95 Identities=18% Similarity=0.195 Sum_probs=66.4
Q ss_pred cceEEEEeCCCCCC--C--ChH-HHHHHHHHHHhhhccCCcccEEEEeCCCceEEEecCCCHHHHHHHhhcCC--ccccc
Q 045156 100 RNCKAICDVSGSVH--G--TPL-EVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVN--WDMNT 172 (319)
Q Consensus 100 ~~~I~v~DvSGSM~--g--~p~-dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~g~~l~ekv~~i~~~~--~g~nT 172 (319)
.-+.+++|+|-||- | .|| .+|+||.-|++.+-.+ =.-.||+|+...+-+.+. + +.... .-++|
T Consensus 464 aAvallvDtS~SM~~eGRw~PmKQtALALhHLv~TrfrG-D~l~~i~Fgr~A~~v~v~------e---Lt~l~~v~eqgT 533 (652)
T COG4867 464 AAVALLVDTSFSMVMEGRWLPMKQTALALHHLVCTRFRG-DALQIIAFGRYARTVTAA------E---LTGLAGVYEQGT 533 (652)
T ss_pred cceeeeeeccHHHHHhccCCchHHHHHHHHHHHHhcCCC-cceEEEeccchhcccCHH------H---HhcCCCcccccc
Confidence 33456699999994 5 454 7899999999877666 355899999988765442 1 11221 34689
Q ss_pred cHHHHHHHHHHHHHhCCCChhhccceEEEEecCccc
Q 045156 173 DFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFD 208 (319)
Q Consensus 173 nl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd 208 (319)
|++-++.+.-+.-+.++ -|.+.|+|+||++=-
T Consensus 534 NlhhaL~LA~r~l~Rh~----~~~~~il~vTDGePt 565 (652)
T COG4867 534 NLHHALALAGRHLRRHA----GAQPVVLVVTDGEPT 565 (652)
T ss_pred chHHHHHHHHHHHHhCc----ccCceEEEEeCCCcc
Confidence 99999877666555444 256789999999753
No 58
>PRK05325 hypothetical protein; Provisional
Probab=94.54 E-value=0.11 Score=52.42 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=66.2
Q ss_pred CcceEEE--EeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEecCCCHHHHH--HHhhcCCccccccH
Q 045156 99 LRNCKAI--CDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKT--RFVSNVNWDMNTDF 174 (319)
Q Consensus 99 ~~~~I~v--~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~g~~l~ekv--~~i~~~~~g~nTnl 174 (319)
..+++++ -||||||....-++|...-+++-.--+.-+.+- +++-|-..+-..-| +.+-...-+|+|-+
T Consensus 220 ~s~AVmfclMDvSGSM~~~~K~lakrff~lly~fL~r~Y~~v--------EvvFI~H~t~AkEVdEeeFF~~~esGGT~v 291 (401)
T PRK05325 220 ESQAVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLRRKYENV--------EVVFIRHHTEAKEVDEEEFFYSRESGGTIV 291 (401)
T ss_pred cCcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCce--------EEEEEeecCceeEcCHHHccccCCCCCeEe
Confidence 4455554 699999999999999999888855444434443 44444221111111 22445566789999
Q ss_pred HHHHHHHHHHHHhCCCChhhccceEEEEecCcccc
Q 045156 175 QEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDE 209 (319)
Q Consensus 175 ~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~ 209 (319)
-.|+++.++.-. ...++.+-==++|=+||+.=|.
T Consensus 292 SSA~~l~~eIi~-~rYpp~~wNIY~f~aSDGDNw~ 325 (401)
T PRK05325 292 SSAYKLALEIIE-ERYPPAEWNIYAFQASDGDNWS 325 (401)
T ss_pred hHHHHHHHHHHH-hhCCHhHCeeEEEEcccCCCcC
Confidence 999999988844 3445555556788889984443
No 59
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=94.28 E-value=0.13 Score=51.42 Aligned_cols=101 Identities=14% Similarity=0.110 Sum_probs=65.1
Q ss_pred CcceEE--EEeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEecCCCHHHHH--HHhhcCCccccccH
Q 045156 99 LRNCKA--ICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKT--RFVSNVNWDMNTDF 174 (319)
Q Consensus 99 ~~~~I~--v~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~g~~l~ekv--~~i~~~~~g~nTnl 174 (319)
..++++ +.||||||....-++|...-+++-.--+.-+.+- +++-|...+-..-| +.+-...-+|+|-+
T Consensus 200 ~s~AV~fc~MDvSGSM~~~~K~lak~ff~~ly~FL~~~Y~~V--------eivFI~H~t~AkEVdEeeFF~~~EsGGT~v 271 (371)
T TIGR02877 200 ESNAVVIAMMDTSGSMGQFKKYIARSFFFWMVKFLRTKYENV--------EICFISHHTEAKEVTEEEFFHKGESGGTYC 271 (371)
T ss_pred cCcEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhccCce--------EEEEEeecCeeEEcCHHHhcccCCCCCeEe
Confidence 345544 4699999999999999999988855444445543 44334211111111 22444556779999
Q ss_pred HHHHHHHHHHHHhCCCChhhccceEEEEecCccc
Q 045156 175 QEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFD 208 (319)
Q Consensus 175 ~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd 208 (319)
-.|+++.++.- +...++.+-==+.|=+||+.=|
T Consensus 272 SSA~~l~~eII-~~rYpp~~wNIY~f~aSDGDNw 304 (371)
T TIGR02877 272 SSGYKKALEII-DERYNPARYNIYAFHFSDGDNL 304 (371)
T ss_pred hHHHHHHHHHH-HhhCChhhCeeEEEEcccCCCc
Confidence 99999988874 4445666655678888998433
No 60
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.20 E-value=0.23 Score=52.49 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=34.8
Q ss_pred CcceEEEEeCCCCCCCChHHHHHHHHHHHhhhccC-CcccEEEEeCCC
Q 045156 99 LRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEE-PWKGKLITFGEK 145 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~-~~~~~~ItFs~~ 145 (319)
++-+-+++|-||||.|.+..||..-+..|++-.+. -.+..++.|+..
T Consensus 392 D~~V~LLID~SGSM~~r~~~vA~~~a~iLa~aL~~~gIp~eVlGFtt~ 439 (600)
T TIGR01651 392 DTVVTLLIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTR 439 (600)
T ss_pred CcEEEEEEECCccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEeeccc
Confidence 33445569999999999999987666666554433 367788899875
No 61
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=92.28 E-value=1.5 Score=41.80 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=73.8
Q ss_pred HHHHHHhhcCCCcceEEEEeCCCCCC---------------CChHHHHH-HHHHHHhhhccCCcccEEEEeCCCc----e
Q 045156 88 RIVDDLSKEGKLRNCKAICDVSGSVH---------------GTPLEVSV-ALGLLVSELSEEPWKGKLITFGEKP----E 147 (319)
Q Consensus 88 ~lv~~l~~~g~~~~~I~v~DvSGSM~---------------g~p~dvai-aL~lllae~~~~~~~~~~ItFs~~p----~ 147 (319)
+..+++++ |.-.|.++.+|-++|=. .+++.-|+ ++|-.++....+ -.-.+..|+.+. .
T Consensus 21 tFldy~~~-G~~~nl~vaIDfT~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D-~~ip~~GFGa~~~~~~~ 98 (254)
T cd01459 21 TFLDYRSA-GLESNLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDSD-KLIPAFGFGAIVTKDQS 98 (254)
T ss_pred CHHHHHhC-CCeeeEEEEEEeCCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHhcCCC-CceeeEeecccCCCCCc
Confidence 45677775 44459999999998842 14555554 445455555443 233455566532 1
Q ss_pred EEEe----------cC-CCHHHHHHHh-hcCCccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCcccc
Q 045156 148 LHLV----------EG-DDLKSKTRFV-SNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDE 209 (319)
Q Consensus 148 ~~~l----------~g-~~l~ekv~~i-~~~~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~ 209 (319)
+... .| .++.+..+.+ ......+-|||..++..+.+.|.+.+-++ -.--|+|+||++.+.
T Consensus 99 v~~~f~~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~--~Y~VLLIiTDG~i~D 170 (254)
T cd01459 99 VFSFFPGYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQS--KYHILLIITDGEITD 170 (254)
T ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCC--ceEEEEEECCCCccc
Confidence 2222 12 3444454444 45577788999999999999998775332 355689999998853
No 62
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=90.70 E-value=2.5 Score=40.76 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=75.8
Q ss_pred CcceEEEEeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEec-C-CCHHHHHHHhhc-CCccccccHH
Q 045156 99 LRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVE-G-DDLKSKTRFVSN-VNWDMNTDFQ 175 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~-g-~~l~ekv~~i~~-~~~g~nTnl~ 175 (319)
-.+...+.|+||||.+-++..+..-...+-..-.+-+.-.+++|..+.....-+ + .+-......+.. ..+++.|++.
T Consensus 37 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 116 (399)
T COG2304 37 PANLTLAIDTSGSMTGALLELAKSAAIELVNGLNPGDLLSIVTFAGSADVLIPPTGATNKESITAAIDQSLQAGGATAVE 116 (399)
T ss_pred CcceEEEeccCCCccchhHHHHHHHHHHHhcccCCCCceEEEEecCCcceecCcccccCHHHHHHHHhhhhccccccHHH
Confidence 456677899999999976777766665554444444677888888855543332 2 333334444555 5899999999
Q ss_pred HHHHHHHHHHHhCCCChhhccceEEEEecCccc
Q 045156 176 EVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFD 208 (319)
Q Consensus 176 ~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd 208 (319)
.....+...+-+..- .+...++++.+|++..
T Consensus 117 ~~~~~~~~~~~~~~~--~~~~~~~~~~tdg~~~ 147 (399)
T COG2304 117 ASLSLAVELAAKALP--RGTLNRILLLTDGENN 147 (399)
T ss_pred HHHHHHHHHhhhcCC--ccceeeEeeeccCccc
Confidence 999999998877653 3478999999996653
No 63
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=86.58 E-value=2.4 Score=45.19 Aligned_cols=101 Identities=21% Similarity=0.203 Sum_probs=60.9
Q ss_pred EEEEeCCCCCCC------ChHHHHHHHHH-HHhhhccCC-cc-c--EEEEeCCCceEEEec----CCCHHHHHHHhhcCC
Q 045156 103 KAICDVSGSVHG------TPLEVSVALGL-LVSELSEEP-WK-G--KLITFGEKPELHLVE----GDDLKSKTRFVSNVN 167 (319)
Q Consensus 103 I~v~DvSGSM~g------~p~dvaiaL~l-llae~~~~~-~~-~--~~ItFs~~p~~~~l~----g~~l~ekv~~i~~~~ 167 (319)
+-++|+||||.. +.+|+|++--- ++-.+.+.+ -. . .+.||.+-|.-+++. |....+.++.+. .+
T Consensus 5 lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~~~~~~~a~~~~eik~l~-a~ 83 (888)
T KOG3768|consen 5 LFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKVACEKLGAVVIEEIKKLH-AP 83 (888)
T ss_pred EEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhhHHhhcccHHHHHHHhhc-Cc
Confidence 467999999985 68999986543 445555443 22 2 567999999988873 445555544331 12
Q ss_pred ccccccHH----HHHHH-HHHHHH-------hCCCChhhccceEEEEecC
Q 045156 168 WDMNTDFQ----EVFDL-ILEVAV-------NGNLKPEQMIKRLFVFSDM 205 (319)
Q Consensus 168 ~g~nTnl~----~vf~~-IL~~A~-------k~~l~~e~mpk~v~V~SDm 205 (319)
++++-++ .|||+ =|++.+ .+.++----|..+|+|||+
T Consensus 84 -~~s~~~~~~~t~AFdlLnlnR~qtGID~yGqGR~pf~lEP~~iI~iTDG 132 (888)
T KOG3768|consen 84 -YGSCQLHHAITEAFDLLNLNRVQTGIDGYGQGRLPFNLEPVTIILITDG 132 (888)
T ss_pred -cchhhhhHHHHHHhhhhhhhhhhhcccccccccCccccCceEEEEEecC
Confidence 2222222 27774 344443 2233322337889999999
No 64
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=84.52 E-value=3.7 Score=41.67 Aligned_cols=99 Identities=19% Similarity=0.189 Sum_probs=61.2
Q ss_pred CcceEEE--EeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEecCCCH---HHHHHHhhcCCcccccc
Q 045156 99 LRNCKAI--CDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDL---KSKTRFVSNVNWDMNTD 173 (319)
Q Consensus 99 ~~~~I~v--~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~g~~l---~ekv~~i~~~~~g~nTn 173 (319)
..|++++ .||||||....-++|...=.+|.---..-+.+. +++-|...+. ++..+++- ..-+|+|-
T Consensus 244 es~AVmfclMDvSGSM~~~~KdlAkrFF~lL~~FL~~kYenv--------eivfIrHht~A~EVdE~dFF~-~~esGGTi 314 (423)
T COG2718 244 ESNAVMFCLMDVSGSMDQSEKDLAKRFFFLLYLFLRRKYENV--------EIVFIRHHTEAKEVDETDFFY-SQESGGTI 314 (423)
T ss_pred ccceEEEEEEecCCCcchHHHHHHHHHHHHHHHHHhccccee--------EEEEEeecCcceecchhhcee-ecCCCCeE
Confidence 3455554 599999999888888765555544444434443 4444422111 22333333 34567899
Q ss_pred HHHHHHHHHHHHHhCCCChhhccceEEEEecCcc
Q 045156 174 FQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEF 207 (319)
Q Consensus 174 l~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqF 207 (319)
+-.|+++.++.-.+ ..++.+-=-+.|=+||++=
T Consensus 315 vSSAl~~m~evi~E-rYp~aeWNIY~fqaSDGDN 347 (423)
T COG2718 315 VSSALKLMLEVIKE-RYPPAEWNIYAFQASDGDN 347 (423)
T ss_pred eHHHHHHHHHHHHh-hCChhheeeeeeeecCCcc
Confidence 99999998887544 4455556667888899843
No 65
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=84.40 E-value=3.9 Score=41.83 Aligned_cols=163 Identities=19% Similarity=0.171 Sum_probs=97.2
Q ss_pred ceEEEEeCCCCCCC---ChHHHHHHHHHHHhhhccCCcccEEEEeCCCceE----------------------------E
Q 045156 101 NCKAICDVSGSVHG---TPLEVSVALGLLVSELSEEPWKGKLITFGEKPEL----------------------------H 149 (319)
Q Consensus 101 ~~I~v~DvSGSM~g---~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~----------------------------~ 149 (319)
+.-.+.|.|+||.. +--..+..|+--++.++++ |+-.|=+|-++|-+ |
T Consensus 101 DLYyLMDlS~SM~ddl~~lk~lg~~L~~~m~~it~n-~rlGfGsFVDK~v~P~~~t~p~~l~~PC~~~~~~c~p~f~f~~ 179 (423)
T smart00187 101 DLYYLMDLSYSMKDDLDNLKSLGDDLAREMKGLTSN-FRLGFGSFVDKTVSPFVSTRPEKLENPCPNYNLTCEPPYGFKH 179 (423)
T ss_pred ceEEEEeCCccHHHHHHHHHHHHHHHHHHHHhcccC-ceeeEEEeecCccCCcccCCHHHhcCCCcCCCCCcCCCcceee
Confidence 34578999999987 3444556666666777776 66666666665331 1
Q ss_pred Eec-CCCHHHHHHHhhcCCcccccc-HHHHHHHHHHHH---HhCCCChhhccce-EEEEecCccccccC-----------
Q 045156 150 LVE-GDDLKSKTRFVSNVNWDMNTD-FQEVFDLILEVA---VNGNLKPEQMIKR-LFVFSDMEFDEASL----------- 212 (319)
Q Consensus 150 ~l~-g~~l~ekv~~i~~~~~g~nTn-l~~vf~~IL~~A---~k~~l~~e~mpk~-v~V~SDmqFd~a~~----------- 212 (319)
.++ ..+..+-.+.+.+...++|-| -+.-|+.|++.| .+-++++. ..| |++.||--|..|-.
T Consensus 180 ~L~LT~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~--a~rllv~~TDa~fH~AGDGkLaGIv~PND 257 (423)
T smart00187 180 VLSLTDDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWRED--ARRLLVFSTDAGFHFAGDGKLAGIVQPND 257 (423)
T ss_pred eccCCCCHHHHHHHHhhceeecCCcCCcccHHHHHHHHhhccccccCCC--ceEEEEEEcCCCccccCCcceeeEecCCC
Confidence 122 123333444455666677765 455699999999 46677653 444 45568999986632
Q ss_pred -----CCC----------cchHHHHHHHHHhcCCCCCCCeEEEE---eCCC-C----CCCCcccCCCCeEEEeccCHHHH
Q 045156 213 -----HPW----------ETDYQAIVRKYTEKGYGSAVPEIIFW---NLRH-S----KSTPVPEGQEGVALVSGFSKILI 269 (319)
Q Consensus 213 -----~~w----------~t~~e~i~~ky~~~Gy~~~~P~ivfW---Nl~~-~----~~~Pv~~~~~gv~LVSG~S~~i~ 269 (319)
+.+ -.+...+.++.+++.-- +||= +... | .-+| -.-|..+|.=|.+|+
T Consensus 258 g~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e~nI~-----~IFAVT~~~~~~Y~~Ls~lip----gs~vg~Ls~DSsNIv 328 (423)
T smart00187 258 GQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENNIN-----PIFAVTKKQVSLYKELSALIP----GSSVGVLSEDSSNVV 328 (423)
T ss_pred CcceeCCCCCcCccCcCCCCCHHHHHHHHHhcCce-----EEEEEcccchhHHHHHHHhcC----cceeeecccCcchHH
Confidence 111 02334477777765543 2332 1111 1 2334 233778899999999
Q ss_pred HHHHhC
Q 045156 270 KLFLEN 275 (319)
Q Consensus 270 k~~l~~ 275 (319)
+++.+.
T Consensus 329 ~LI~~a 334 (423)
T smart00187 329 ELIKDA 334 (423)
T ss_pred HHHHHH
Confidence 999865
No 66
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=79.21 E-value=1.6 Score=45.25 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=30.7
Q ss_pred eEEEEeCCCCCCCChHHHHHHHHHHHhhhccCC-cccEEEEeCC
Q 045156 102 CKAICDVSGSVHGTPLEVSVALGLLVSELSEEP-WKGKLITFGE 144 (319)
Q Consensus 102 ~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~-~~~~~ItFs~ 144 (319)
+-.|+|.||||.|+|+.||..-+-.|+.--+-. .++.+.-|..
T Consensus 416 VtlviDnSGSMrGRpItvAatcAdilArtLeRcgVk~eIlGFTT 459 (620)
T COG4547 416 VTLVIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTT 459 (620)
T ss_pred heeeeccCCCcCCcceehhHHHHHHHHHHHHHcCCceEEeeeee
Confidence 345799999999999999999998886543321 3444444543
No 67
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=76.27 E-value=42 Score=30.15 Aligned_cols=126 Identities=17% Similarity=0.261 Sum_probs=62.3
Q ss_pred eEEEEeCCCCCCC------ChHHHHHHHHHHH--hhhccCCc-ccEEEEeCCCce-----------E---EEecCCCHHH
Q 045156 102 CKAICDVSGSVHG------TPLEVSVALGLLV--SELSEEPW-KGKLITFGEKPE-----------L---HLVEGDDLKS 158 (319)
Q Consensus 102 ~I~v~DvSGSM~g------~p~dvaiaL~lll--ae~~~~~~-~~~~ItFs~~p~-----------~---~~l~g~~l~e 158 (319)
.|.++|+|.||.. .+++-|+.....+ ..+-..|- .-.++.|+.... + ..+...+ .+
T Consensus 2 ~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l~~~~-~~ 80 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPLDPPS-AE 80 (224)
T ss_dssp EEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEECC--B-HH
T ss_pred EEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecCCccC-HH
Confidence 4678999999973 3566665544433 33334432 225666764433 2 2222112 34
Q ss_pred HHHHhhcC-----------CccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHH--
Q 045156 159 KTRFVSNV-----------NWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRK-- 225 (319)
Q Consensus 159 kv~~i~~~-----------~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~k-- 225 (319)
.++.+.+. .-...-++..|+-..+..-.+.--++.---+|||+|||. |.... .....+.+..+
T Consensus 81 ~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~--d~p~~--~~~~~~~~~~~l~ 156 (224)
T PF03731_consen 81 RLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDN--DGPHE--DDDELERIIQKLK 156 (224)
T ss_dssp HHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES---SSTTT---CCCHHHHHHHHH
T ss_pred HHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCC--CCCCC--CHHHHHHHHHhhc
Confidence 44444332 233445788888766665543111222345899999998 33322 23566677666
Q ss_pred ---HHhcCCC
Q 045156 226 ---YTEKGYG 232 (319)
Q Consensus 226 ---y~~~Gy~ 232 (319)
+.+.|..
T Consensus 157 ~~Dl~~~~i~ 166 (224)
T PF03731_consen 157 AKDLQDNGIE 166 (224)
T ss_dssp HHHHHHHTEE
T ss_pred cccchhcCcc
Confidence 7777777
No 68
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=74.47 E-value=6 Score=34.59 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=40.1
Q ss_pred CCHHHHHHHh-hcCCccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCcccc
Q 045156 154 DDLKSKTRFV-SNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDE 209 (319)
Q Consensus 154 ~~l~ekv~~i-~~~~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~ 209 (319)
.++.+..+.. .+....+-|+|..++..+.+.|.+ .-++..----++|+||++.++
T Consensus 67 ~gvl~~Y~~~~~~v~l~GPT~fapiI~~a~~~a~~-~~~~~~~Y~iLlIlTDG~i~D 122 (146)
T PF07002_consen 67 DGVLEAYRKALPKVQLSGPTNFAPIINHAAKIAKQ-SNQNGQQYFILLILTDGQITD 122 (146)
T ss_pred HHHHHHHHHHhhheEECCCccHHHHHHHHHHHHhh-hccCCceEEEEEEeccccccc
Confidence 4455555554 556888999999999999999986 222233456789999999863
No 69
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=68.17 E-value=19 Score=38.28 Aligned_cols=154 Identities=15% Similarity=0.110 Sum_probs=84.5
Q ss_pred ceEEEEeCCCCCCC------ChHHH----HHHHHHHHhhhccCCcccEEEEeCCCceE-EEe---c--CCCHHHHHHH-h
Q 045156 101 NCKAICDVSGSVHG------TPLEV----SVALGLLVSELSEEPWKGKLITFGEKPEL-HLV---E--GDDLKSKTRF-V 163 (319)
Q Consensus 101 ~~I~v~DvSGSM~g------~p~dv----aiaL~lllae~~~~~~~~~~ItFs~~p~~-~~l---~--g~~l~ekv~~-i 163 (319)
-|.+++|+|-||.. .-+++ -++|+.=++-+ -|...+.+|+++-+- +.+ . ..++.+++.- |
T Consensus 448 a~TLLvD~S~St~a~mdetrRvidl~~eaL~~la~~~qa~---gd~~~~~~fts~rr~~vri~tvk~FDes~~~~~~~RI 524 (637)
T COG4548 448 AFTLLVDVSASTDAKMDETRRVIDLFHEALLVLAHGHQAL---GDSEDILDFTSRRRPWVRINTVKDFDESMGETVGPRI 524 (637)
T ss_pred eeEEEeecccchHHHhhhhhhhHHHHHHHHHHhhchhhhh---CCHHHhcCchhhcCcceeeeeeeccccccccccchhh
Confidence 46788999999974 11222 11222111111 144456777776552 322 2 2344444432 5
Q ss_pred hcCCccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCcccccc---C-CCCcchHHHHHHHHHhcCCCCCCCeEE
Q 045156 164 SNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEAS---L-HPWETDYQAIVRKYTEKGYGSAVPEII 239 (319)
Q Consensus 164 ~~~~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~---~-~~w~t~~e~i~~ky~~~Gy~~~~P~iv 239 (319)
...+-|+-|...+|+...-.....-. +-=|-+|||||++=+.-. + ..=+..+++.-.. ++.|-+ +=-|
T Consensus 525 mALePg~ytR~G~AIR~As~kL~~rp----q~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~ea-Rk~Gi~---VF~V 596 (637)
T COG4548 525 MALEPGYYTRDGAAIRHASAKLMERP----QRQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIEA-RKSGIE---VFNV 596 (637)
T ss_pred eecCccccccccHHHHHHHHHHhcCc----ccceEEEEecCCCcccccccccccchhhHHHHHHHH-HhcCce---EEEE
Confidence 66788888888888865433322221 123679999999754432 1 1112344444333 344776 3333
Q ss_pred EEeCCCCCCCCcccCCCCeEEEeccC
Q 045156 240 FWNLRHSKSTPVPEGQEGVALVSGFS 265 (319)
Q Consensus 240 fWNl~~~~~~Pv~~~~~gv~LVSG~S 265 (319)
|-+=..-.-.|..--++|.++|++..
T Consensus 597 tld~ea~~y~p~~fgqngYa~V~~v~ 622 (637)
T COG4548 597 TLDREAISYLPALFGQNGYAFVERVA 622 (637)
T ss_pred EecchhhhhhHHHhccCceEEccchh
Confidence 33323336678889999999999864
No 70
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=63.90 E-value=1e+02 Score=28.32 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=36.9
Q ss_pred ceEEEEeCCCC-CC-CChHHHHHHHHHHHhhhcc-CCcccEEEEeCCCceEEEec
Q 045156 101 NCKAICDVSGS-VH-GTPLEVSVALGLLVSELSE-EPWKGKLITFGEKPELHLVE 152 (319)
Q Consensus 101 ~~I~v~DvSGS-M~-g~p~dvaiaL~lllae~~~-~~~~~~~ItFs~~p~~~~l~ 152 (319)
.++.|+|+|.. .+ |....+.-+|--.+..++. +.-+-.||||++.-.++.+.
T Consensus 5 ~~vFvID~s~~ai~~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~ 59 (239)
T cd01468 5 VFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLS 59 (239)
T ss_pred EEEEEEEcchHhccccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECC
Confidence 46889999874 33 5566666677777777763 22567899999888777764
No 71
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=62.34 E-value=19 Score=34.63 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=45.2
Q ss_pred eEEEEecCcccccc-----CCCCcchHHHHHHHH-----------HhcCCCCCCCeEEEEeCCCC-CCCCcccCCCCeEE
Q 045156 198 RLFVFSDMEFDEAS-----LHPWETDYQAIVRKY-----------TEKGYGSAVPEIIFWNLRHS-KSTPVPEGQEGVAL 260 (319)
Q Consensus 198 ~v~V~SDmqFd~a~-----~~~w~t~~e~i~~ky-----------~~~Gy~~~~P~ivfWNl~~~-~~~Pv~~~~~gv~L 260 (319)
||||-.|||==... ..++...|+..++.+ .++|.+ +|+-||--|+ .++....-.++|.|
T Consensus 2 KvyISaDmEGiaGv~~~~q~~~~~~~Y~~~R~~mt~evnAaiega~~aGa~----eVvV~DsHg~~~Nl~~~~L~~~~~L 77 (265)
T PF04951_consen 2 KVYISADMEGIAGVVSWEQTSPGNPEYERARRLMTREVNAAIEGAFEAGAT----EVVVNDSHGSMRNLLPEELPPRARL 77 (265)
T ss_dssp EEEEEE-STTSTT--SGGGT-TTSTTHHHHHHHHHHHHHHHHHHHHHTT-S----EEEEEE-STTS--S-TTTS-TTSEE
T ss_pred eEEEEECCCCCCCCCCHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhcCCe----EEEEEecCCCCCCcChHHCCcCeEE
Confidence 79999999854321 133456788766655 356876 8999999887 77877788899999
Q ss_pred EeccCHHHHHHHH
Q 045156 261 VSGFSKILIKLFL 273 (319)
Q Consensus 261 VSG~S~~i~k~~l 273 (319)
|+| +|.-+-|+-
T Consensus 78 I~G-~~rp~~Mm~ 89 (265)
T PF04951_consen 78 IRG-SPRPLSMME 89 (265)
T ss_dssp EEE-S--TTGGGT
T ss_pred EeC-CCCcchhhh
Confidence 999 887776664
No 72
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=56.62 E-value=15 Score=37.51 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=62.2
Q ss_pred EEEEeCCCCCCCCh---HHHHHHHHHHHhhhccCCcccEEEEeCCCceE----------------------------EEe
Q 045156 103 KAICDVSGSVHGTP---LEVSVALGLLVSELSEEPWKGKLITFGEKPEL----------------------------HLV 151 (319)
Q Consensus 103 I~v~DvSGSM~g~p---~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~----------------------------~~l 151 (319)
-.+.|+|+||.... -..+-.|+.-++++++. |+-.|=+|-++|-. |.+
T Consensus 106 YyLmDlS~Sm~ddl~~l~~lg~~l~~~~~~it~~-~~~GfGsfvdK~~~P~~~~~p~~l~~pc~~~~~~c~~~~~f~~~l 184 (426)
T PF00362_consen 106 YYLMDLSYSMKDDLENLKSLGQDLAEEMRNITSN-FRLGFGSFVDKPVMPFVSTTPEKLKNPCPSKNPNCQPPFSFRHVL 184 (426)
T ss_dssp EEEEE-SGGGHHHHHHHCCCCHHHHHHHHTT-SS-EEEEEEEESSSSSTTTST-SSHCHHSTSCCTTS--B---SEEEEE
T ss_pred EEEeechhhhhhhHHHHHHHHHHHHHHHHhcCcc-ceEechhhcccccCCcccCChhhhcCcccccCCCCCCCeeeEEee
Confidence 46899999998632 22255677777888877 88888888777531 112
Q ss_pred c-CCCHHHHHHHhhcCCcccccc-HHHHHHHHHHHHH---hCCCChhhccceEEEEecCcccccc
Q 045156 152 E-GDDLKSKTRFVSNVNWDMNTD-FQEVFDLILEVAV---NGNLKPEQMIKRLFVFSDMEFDEAS 211 (319)
Q Consensus 152 ~-g~~l~ekv~~i~~~~~g~nTn-l~~vf~~IL~~A~---k~~l~~e~mpk~v~V~SDmqFd~a~ 211 (319)
+ ..+..+-.+.+.+...++|-| -+..||.|++.|+ +-|+..+ -=+-|++.||--|..|.
T Consensus 185 ~Lt~~~~~F~~~v~~~~is~n~D~PEgg~dal~Qa~vC~~~igWr~~-a~~llv~~TD~~fH~ag 248 (426)
T PF00362_consen 185 SLTDDITEFNEEVNKQKISGNLDAPEGGLDALMQAAVCQEEIGWRNE-ARRLLVFSTDAGFHFAG 248 (426)
T ss_dssp EEES-HHHHHHHHHTS--B--SSSSBSHHHHHHHHHH-HHHHT--ST-SEEEEEEEESS-B--TT
T ss_pred cccchHHHHHHhhhhccccCCCCCCccccchheeeeecccccCcccC-ceEEEEEEcCCcccccc
Confidence 2 134555555566777777765 4677899999985 5566643 23446667899998873
No 73
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=53.14 E-value=48 Score=30.90 Aligned_cols=121 Identities=14% Similarity=0.149 Sum_probs=66.7
Q ss_pred EEEEeCCCCCCCChHHH---HHHHHH----HHhhhcc---CCcccEEEEeCCC-ceEEEe-----cC-CC---HHHHHHH
Q 045156 103 KAICDVSGSVHGTPLEV---SVALGL----LVSELSE---EPWKGKLITFGEK-PELHLV-----EG-DD---LKSKTRF 162 (319)
Q Consensus 103 I~v~DvSGSM~g~p~dv---aiaL~l----llae~~~---~~~~~~~ItFs~~-p~~~~l-----~g-~~---l~ekv~~ 162 (319)
+..+||||||...-+.. +.+-+| .++-+.. ++-.-.++.+|.. -+-+.+ .+ .+ +.+.++.
T Consensus 7 vLavDvS~SVD~~E~~lQ~~G~A~Al~dp~V~~Ai~~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~a~A~~l~~ 86 (205)
T PF06707_consen 7 VLAVDVSGSVDADEYRLQREGYAAALRDPEVIAAILSGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAEAFAARLRA 86 (205)
T ss_pred eeeeeccCCCCHHHHHHHHHHHHHHHCCHHHHHHHhcCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHHHHHHHHHh
Confidence 45699999998632211 122222 2222333 4566678899973 222222 23 23 4444444
Q ss_pred hhcCCccccccHHHHHHHHHHHHHhCCCChhhccceEEEEe-cCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 163 VSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFS-DMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 163 i~~~~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~S-DmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
..+...++ |.+..++......-..+. .+..+++|=+| |+. ++... .--+..++.+..+|..
T Consensus 87 ~~r~~~~~-Taig~Al~~a~~ll~~~~---~~~~RrVIDvSGDG~-~N~G~----~p~~~ard~~~~~Git 148 (205)
T PF06707_consen 87 APRRFGGR-TAIGSALDFAAALLAQNP---FECWRRVIDVSGDGP-NNQGP----RPVTSARDAAVAAGIT 148 (205)
T ss_pred CCCCCCCC-chHHHHHHHHHHHHHhCC---CCCceEEEEECCCCC-CCCCC----CccHHHHHHHHHCCeE
Confidence 44444454 999999987666655554 34566777554 543 22111 2224677778888887
No 74
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=49.03 E-value=1.1e+02 Score=24.54 Aligned_cols=84 Identities=11% Similarity=0.167 Sum_probs=58.3
Q ss_pred ccccccCCCChHHHHHHhhhcCchhhhHHHHHHHHHHHHHHhhcCCCcceEEEEeCCCCCCCChHHHHHHHHHHHhhhcc
Q 045156 53 KAKISTGALLPHGIIKSVNHETEFALFQVAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHGTPLEVSVALGLLVSELSE 132 (319)
Q Consensus 53 ~aki~~~~l~P~eiv~~~~~~~~~~~~~~~e~qW~~lv~~l~~~g~~~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~ 132 (319)
+..|.-=.-.|+++++++..-- +.......+|-.+... .+...++++++|+.| ...-.+.-+++-.+++...
T Consensus 7 ~v~l~~P~~~p~~l~~aL~~~~--~~~~~V~~Ayl~~~~~---~~~~~~~li~vd~~~---~~~~~~~~~i~~~~~~~~~ 78 (108)
T PF14581_consen 7 KVLLGEPEEEPTDLLAALSEYF--KQHKNVRAAYLALMQD---EDEQPSLLIGVDFDG---EDIEEIFQEIGRAARPYLP 78 (108)
T ss_pred EEEecCCccCHHHHHHHHHHHH--hhCccHHHhHHHHhhc---cCCCceEEEEEeccC---hhHHHHHHHHHHHhhhcCC
Confidence 4455555779999999887431 1234666777777666 467889999999999 5566677777777777766
Q ss_pred CCcccEEEEeCC
Q 045156 133 EPWKGKLITFGE 144 (319)
Q Consensus 133 ~~~~~~~ItFs~ 144 (319)
+.|--.|++..+
T Consensus 79 ~~~~vd~~~~~~ 90 (108)
T PF14581_consen 79 DGWPVDFVLLDD 90 (108)
T ss_pred CCceEEEEEccC
Confidence 656666555543
No 75
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=47.36 E-value=1.3e+02 Score=30.22 Aligned_cols=100 Identities=15% Similarity=0.174 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHH-------HhhcCCCcceEEEEeCCCCCCC-----ChHHHHHHHHHHHhhhccC-CcccEEEEeCCC-
Q 045156 80 QVAELQWNRIVDD-------LSKEGKLRNCKAICDVSGSVHG-----TPLEVSVALGLLVSELSEE-PWKGKLITFGEK- 145 (319)
Q Consensus 80 ~~~e~qW~~lv~~-------l~~~g~~~~~I~v~DvSGSM~g-----~p~dvaiaL~lllae~~~~-~~~~~~ItFs~~- 145 (319)
.+----||+.... ... ....++++++|-|.||.. .+.|-|+.+++.++...-. --+-.+.+|++.
T Consensus 199 ~~r~IdWkasAR~g~l~vrefe~-er~~~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~~l~~gd~vg~~~~~~~~ 277 (416)
T COG1721 199 DLRRIDWKASARTGKLLVREFEE-ERGRTVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYAALKNGDRVGLLIFGGGG 277 (416)
T ss_pred cccccchhhhcccCCceeehhhh-hcCceEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHHHHhCCCeeEEEEECCCc
Confidence 3444568865543 222 236678999999999984 6888888888888555422 245578888764
Q ss_pred ceEEEe-cC-CCHHHHHHHhhcCC-ccccccHHHHHHH
Q 045156 146 PELHLV-EG-DDLKSKTRFVSNVN-WDMNTDFQEVFDL 180 (319)
Q Consensus 146 p~~~~l-~g-~~l~ekv~~i~~~~-~g~nTnl~~vf~~ 180 (319)
+..+.. .| ..+..-++.+...+ -+.+|+...++..
T Consensus 278 ~~~~~p~~G~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 315 (416)
T COG1721 278 PKWIPPSRGRRHLARILKALALLRPAPEETDYIRRVSK 315 (416)
T ss_pred ceeeCCCcchHHHHHHHHHhhccCCCCcchhHHHHhhh
Confidence 455444 34 45555555554443 3444677666433
No 76
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=43.62 E-value=54 Score=37.69 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=42.5
Q ss_pred CCccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCc---------ccccc-CCCCc---chHHHHHHHHHhcCCC
Q 045156 166 VNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDME---------FDEAS-LHPWE---TDYQAIVRKYTEKGYG 232 (319)
Q Consensus 166 ~~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmq---------Fd~a~-~~~w~---t~~e~i~~ky~~~Gy~ 232 (319)
...+|++|+.+|-+.+++.|.++..--++ |.-.+.+++.. ||... ++.|. .-+..|++.|+++|-+
T Consensus 997 VgV~Y~sDie~v~~iL~eaa~~~~~VL~~-P~P~V~~~~fgdssi~~elr~wv~~~~~~~~v~~el~~~I~~~F~~~GIe 1075 (1109)
T PRK10929 997 IPAPADANSEEVTEILLTAARRCSLVLDN-PAPEVFLVDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFREHGID 1075 (1109)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCccccCC-CCCEEEEEecCCCceEEEEEEEEcChhhHHHHHHHHHHHHHHHHHHCCCc
Confidence 45689999999999999999876533222 33344455442 11110 11122 2346699999999998
Q ss_pred CCCC
Q 045156 233 SAVP 236 (319)
Q Consensus 233 ~~~P 236 (319)
+|
T Consensus 1076 --IP 1077 (1109)
T PRK10929 1076 --MP 1077 (1109)
T ss_pred --CC
Confidence 55
No 77
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=40.17 E-value=30 Score=34.96 Aligned_cols=64 Identities=17% Similarity=0.349 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHHHhCCCChhhccceEEEEecC----ccccccCCCCcchHHHHHHHHHhcC--CCCCCCeEEEEeCCCC
Q 045156 173 DFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDM----EFDEASLHPWETDYQAIVRKYTEKG--YGSAVPEIIFWNLRHS 246 (319)
Q Consensus 173 nl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDm----qFd~a~~~~w~t~~e~i~~ky~~~G--y~~~~P~ivfWNl~~~ 246 (319)
++...|..+|..-.+++ ...|++|+|+=|+ ||...- ..+...|++.|++.+ |. |++.|-=+.-+
T Consensus 250 ~l~~~~~~~l~~~~~~~---~~~P~~IiiyRDGvsegq~~~v~----~~E~~~i~~a~~~~~~~~~---pkit~ivv~Kr 319 (426)
T cd04657 250 DLESMVRELLRAFKKAT---GKLPERIIYYRDGVSEGQFAQVL----NEELPAIRKACAKLYPGYK---PKITFIVVQKR 319 (426)
T ss_pred HHHHHHHHHHHHHHHHh---CCCCceEEEEEcCcCHHHHHHHH----HHHHHHHHHHHHHhccCCC---CcEEEEEeccc
Confidence 47788877777666554 3389999997555 554421 256677888887653 55 99999888654
No 78
>PLN03202 protein argonaute; Provisional
Probab=39.93 E-value=31 Score=38.61 Aligned_cols=92 Identities=10% Similarity=0.163 Sum_probs=54.9
Q ss_pred ccHHHHHHHHHHHHHh-CCCChhhccceEEEE----ecCccccccCCCCcchHHHHHHHHHhcC--CCCCCCeEEEEeCC
Q 045156 172 TDFQEVFDLILEVAVN-GNLKPEQMIKRLFVF----SDMEFDEASLHPWETDYQAIVRKYTEKG--YGSAVPEIIFWNLR 244 (319)
Q Consensus 172 Tnl~~vf~~IL~~A~k-~~l~~e~mpk~v~V~----SDmqFd~a~~~~w~t~~e~i~~ky~~~G--y~~~~P~ivfWNl~ 244 (319)
+++...+...|....+ ++ ..+|.+|||+ ||+||++.-. .+...|++.|++.+ |. |+|.|-=+.
T Consensus 688 ~~~~~m~~~~L~~~~~~~~---~~~P~~IiiyRDGVseGQ~~~Vl~----~Ev~~i~~a~~~~~~~~~---Pkit~Ivv~ 757 (900)
T PLN03202 688 KDDDGIIRELLLDFYTSSG---KRKPEQIIIFRDGVSESQFNQVLN----IELDQIIEACKFLDESWS---PKFTVIVAQ 757 (900)
T ss_pred cchHHHHHHHHHHHHHHcC---CCCCceeEEEecCCCHHHHHHHHH----HHHHHHHHHHHHhCCCCC---CcEEEEEEe
Confidence 4577777655554443 32 3589999995 6678877533 56777888888754 55 999988665
Q ss_pred CC---CCCCc---ccCCCCeEEEeccC-HHHHHHHH
Q 045156 245 HS---KSTPV---PEGQEGVALVSGFS-KILIKLFL 273 (319)
Q Consensus 245 ~~---~~~Pv---~~~~~gv~LVSG~S-~~i~k~~l 273 (319)
-+ +=+|. ..-.+||..=+|.. |.-++.+|
T Consensus 758 Krh~tRff~~~~~~N~~pGTvVD~~it~p~~~dFyL 793 (900)
T PLN03202 758 KNHHTKFFQAGSPDNVPPGTVVDNKICHPRNNDFYM 793 (900)
T ss_pred ccceeeeeccCCCCCCCCceEeccccccCCcceEEE
Confidence 43 22231 11234555544443 44444444
No 79
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=37.55 E-value=4.7e+02 Score=26.79 Aligned_cols=96 Identities=16% Similarity=0.192 Sum_probs=57.0
Q ss_pred CCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEecCCCHHHHHHHhhc---CCccccc-------cHHHHHH
Q 045156 110 GSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSN---VNWDMNT-------DFQEVFD 179 (319)
Q Consensus 110 GSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~g~~l~ekv~~i~~---~~~g~nT-------nl~~vf~ 179 (319)
.||+|.+-..|-++|--+.+.-- +..++.|++. ...|-++.+.. .=.|+.| -++.++-
T Consensus 254 ~smyg~T~~ma~aiaegl~~~gv---~v~~~~~~~~---------~~~eI~~~i~~a~~~vvGsPT~~~~~~p~i~~~l~ 321 (388)
T COG0426 254 DSMYGNTEKMAQAIAEGLMKEGV---DVEVINLEDA---------DPSEIVEEILDAKGLVVGSPTINGGAHPPIQTALG 321 (388)
T ss_pred ecccCCHHHHHHHHHHHhhhcCC---ceEEEEcccC---------CHHHHHHHHhhcceEEEecCcccCCCCchHHHHHH
Confidence 38999888888777766544333 3354545443 44444444433 2356665 4666666
Q ss_pred HHHHHHHhCCCChhhccceEEEEecCccccccCCCCc-chHHHHHHHHHhcCCCC
Q 045156 180 LILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWE-TDYQAIVRKYTEKGYGS 233 (319)
Q Consensus 180 ~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~-t~~e~i~~ky~~~Gy~~ 233 (319)
.++..+-+++ .+.||-=+ .|. .--..+.++|+++||+.
T Consensus 322 ~v~~~~~~~k--------~~~vfgS~--------GW~g~av~~i~~~l~~~g~~~ 360 (388)
T COG0426 322 YVLALAPKNK--------LAGVFGSY--------GWSGEAVDLIEEKLKDLGFEF 360 (388)
T ss_pred HHHhccCcCc--------eEEEEecc--------CCCCcchHHHHHHHHhcCcEE
Confidence 6666544444 35565444 243 33556999999999993
No 80
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=37.12 E-value=62 Score=30.44 Aligned_cols=65 Identities=23% Similarity=0.427 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHHHHhCCCChhhccceEEEEecC----ccccccCCCCcchHHHHHHHHHhcC--CCCCCCeEEEEeCCCC
Q 045156 173 DFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDM----EFDEASLHPWETDYQAIVRKYTEKG--YGSAVPEIIFWNLRHS 246 (319)
Q Consensus 173 nl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDm----qFd~a~~~~w~t~~e~i~~ky~~~G--y~~~~P~ivfWNl~~~ 246 (319)
++...+..+|+.-.+++=. ..|++|+|+=|+ ||.... ..+.+.+++.+++.+ |. |++.|-.++-+
T Consensus 127 ~l~~~~~~~L~~~~~~~~~--~~P~~IiiyRdGvse~~~~~v~----~~Ei~~i~~a~~~~~~~~~---p~~~~i~v~K~ 197 (302)
T PF02171_consen 127 NLEEIIKEALKEFKKNNGK--WLPERIIIYRDGVSEGQFKKVL----EEEIEAIKEAIKELGEDYN---PKITYIVVQKR 197 (302)
T ss_dssp HHHHHHHHHHHHHHHTTTT---TTSEEEEEEES--GGGHHHHH----HHHHHHHHHHHHHHTHTTC---TEEEEEEEESS
T ss_pred chhhHHHHHHHHHHHHcCC--CCCceEEEEEcccCHHhhcccH----HHHHHHHHHHHhhcccCCC---CcEEEEEeecc
Confidence 4666788777776665522 279999998776 776532 246677777776544 66 99999888654
No 81
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=36.51 E-value=68 Score=35.39 Aligned_cols=106 Identities=23% Similarity=0.249 Sum_probs=63.7
Q ss_pred eEEEEeCCCCCCCC---hHHHHHHHHHHHhhhccCCcccEEEEeCCCceE---------------------------EEe
Q 045156 102 CKAICDVSGSVHGT---PLEVSVALGLLVSELSEEPWKGKLITFGEKPEL---------------------------HLV 151 (319)
Q Consensus 102 ~I~v~DvSGSM~g~---p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~---------------------------~~l 151 (319)
--.+.|+|-||... --.++-.|+--+++++++ |+-.|=+|=+.|-. |.+
T Consensus 135 LYyLMDlS~SM~DDl~~l~~LG~~L~~~m~~lT~n-frlGFGSFVDK~v~P~i~~~pekl~npc~~~~~C~ppfgfkhvL 213 (783)
T KOG1226|consen 135 LYYLMDLSYSMKDDLENLKSLGTDLAREMRKLTSN-FRLGFGSFVDKTVSPYISTTPEKLRNPCPNYKNCAPPFGFKHVL 213 (783)
T ss_pred EEEEeecchhhhhhHHHHHHHHHHHHHHHHHHhcc-CCccccchhccccccccccCcHHhcCCCCCcccCCCCcccceee
Confidence 34689999999873 334555666666777777 66555555444332 111
Q ss_pred c-CCCHHHHHHHhhcCCccccccH-HHHHHHHHHHHH---hCCCChhhccceEEEE-ecCccccc
Q 045156 152 E-GDDLKSKTRFVSNVNWDMNTDF-QEVFDLILEVAV---NGNLKPEQMIKRLFVF-SDMEFDEA 210 (319)
Q Consensus 152 ~-g~~l~ekv~~i~~~~~g~nTnl-~~vf~~IL~~A~---k~~l~~e~mpk~v~V~-SDmqFd~a 210 (319)
+ -.+..+--+.+.+....+|.|- +.-||.|+++|+ +-+++. -..+++|| ||..|..|
T Consensus 214 sLT~~~~~F~~~V~~q~ISgNlDaPEGGfDAimQaavC~~~IGWR~--~a~~lLVF~td~~~H~a 276 (783)
T KOG1226|consen 214 SLTNDAEEFNEEVGKQRISGNLDAPEGGFDAIMQAAVCTEKIGWRN--DATRLLVFSTDAGFHFA 276 (783)
T ss_pred ecCCChHHHHHHHhhceeccCCCCCCchHHHHHhhhhccccccccc--cceeEEEEEcCcceeee
Confidence 1 1222233333455667777653 445999999997 445554 36677776 57777665
No 82
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=36.29 E-value=2.7e+02 Score=29.71 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=62.3
Q ss_pred ceEEEEeCCCCCCC--------ChHHHHHHHHHHH--hhhccCCccc-EEEEeCCCc--------e---EEEe--cCCCH
Q 045156 101 NCKAICDVSGSVHG--------TPLEVSVALGLLV--SELSEEPWKG-KLITFGEKP--------E---LHLV--EGDDL 156 (319)
Q Consensus 101 ~~I~v~DvSGSM~g--------~p~dvaiaL~lll--ae~~~~~~~~-~~ItFs~~p--------~---~~~l--~g~~l 156 (319)
-.|.++|+|-||.. .|+..|+.....+ ..+-..|.-. .++-|+..- . +..+ ++..+
T Consensus 12 ailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~L~~p~a~~ 91 (584)
T TIGR00578 12 SLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKR 91 (584)
T ss_pred EEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEeeCCCCCHHH
Confidence 35667999999984 3555555443333 3344444332 455565432 1 3444 23334
Q ss_pred HHHHHHhhcC--------Ccccc--ccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHH---HH
Q 045156 157 KSKTRFVSNV--------NWDMN--TDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQA---IV 223 (319)
Q Consensus 157 ~ekv~~i~~~--------~~g~n--Tnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~---i~ 223 (319)
...++.+..- .+|.+ .++..|+-...+.-.+.. +.--=+|||+|||- |.-.+.. .+..+. +.
T Consensus 92 i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~--~k~~~kRI~lfTd~--D~P~~~~-~~~~~~a~~~a 166 (584)
T TIGR00578 92 ILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQ--FRMSHKRIMLFTNE--DNPHGND-SAKASRARTKA 166 (584)
T ss_pred HHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcc--hhhcCcEEEEECCC--CCCCCCc-hhHHHHHHHHH
Confidence 3444444221 12333 256666644333333211 11124789999987 4433221 122222 34
Q ss_pred HHHHhcCCC
Q 045156 224 RKYTEKGYG 232 (319)
Q Consensus 224 ~ky~~~Gy~ 232 (319)
+.+++.|..
T Consensus 167 ~dl~~~gi~ 175 (584)
T TIGR00578 167 GDLRDTGIF 175 (584)
T ss_pred HHHHhcCeE
Confidence 556677877
No 83
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=35.08 E-value=3.5e+02 Score=25.98 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=54.9
Q ss_pred CcceEEEEeCCCCCC-C----ChHHH-HHHHHHHH-hhhccCC-cccEEEEeCC-CceEEEecCCCHHHHHHHhhcCCcc
Q 045156 99 LRNCKAICDVSGSVH-G----TPLEV-SVALGLLV-SELSEEP-WKGKLITFGE-KPELHLVEGDDLKSKTRFVSNVNWD 169 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~-g----~p~dv-aiaL~lll-ae~~~~~-~~~~~ItFs~-~p~~~~l~g~~l~ekv~~i~~~~~g 169 (319)
++.+++++|.|-=|. | +.+.. --+.-+++ +.+..+| ....+||-.. .|++..-.......-+..+...+.+
T Consensus 3 lEatmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T~d~gkils~lh~i~~~ 82 (259)
T KOG2884|consen 3 LEATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLTSDRGKILSKLHGIQPH 82 (259)
T ss_pred cceEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeeccccchHHHHHhcCCCcC
Confidence 456788999997775 3 22222 22344555 5555555 8889999999 8887666544444444456677888
Q ss_pred ccccHHHHHHH
Q 045156 170 MNTDFQEVFDL 180 (319)
Q Consensus 170 ~nTnl~~vf~~ 180 (319)
+..||-..+..
T Consensus 83 g~~~~~~~i~i 93 (259)
T KOG2884|consen 83 GKANFMTGIQI 93 (259)
T ss_pred CcccHHHHHHH
Confidence 99999999863
No 84
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=33.85 E-value=1.9e+02 Score=28.07 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=52.8
Q ss_pred eEEEEecCccccccC-----CCCcchHHHHHHHH-----------HhcCCCCCCCeEEEEeCCCC-CCCCcccCCCCeEE
Q 045156 198 RLFVFSDMEFDEASL-----HPWETDYQAIVRKY-----------TEKGYGSAVPEIIFWNLRHS-KSTPVPEGQEGVAL 260 (319)
Q Consensus 198 ~v~V~SDmqFd~a~~-----~~w~t~~e~i~~ky-----------~~~Gy~~~~P~ivfWNl~~~-~~~Pv~~~~~gv~L 260 (319)
||||-.|||==.... .+...+|+..++.+ .++|.+ +|+-+|=-|+ .+.+...-.+.+.|
T Consensus 2 KiyISaDmEGi~Gv~~~~~~~~~~~~y~~~r~~mT~evnAaiega~~aGa~----eIvV~DsHg~~~Nl~~e~L~~~a~L 77 (270)
T cd08769 2 KIYISVDIEGLPGVVSWEMVAPGKELYKEARRLMTEELNAVLEELFESGFE----EIVVADSHGRMDNIDYEELDPRVSL 77 (270)
T ss_pred eEEEEeCCCCCCCCCCHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHcCCc----EEEEEcCCCCcCCCChHHCCcceEE
Confidence 799999998543322 22345687766654 355776 7999998887 78888888899999
Q ss_pred EeccCHHHHHHHHhCC
Q 045156 261 VSGFSKILIKLFLENE 276 (319)
Q Consensus 261 VSG~S~~i~k~~l~~~ 276 (319)
|+|+. +-+-|+-.-|
T Consensus 78 I~G~p-rp~~Mm~Gld 92 (270)
T cd08769 78 VSGYP-RPLSMMTGLD 92 (270)
T ss_pred EecCC-CCchHhhccc
Confidence 99985 6666666433
No 85
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=33.00 E-value=1.8e+02 Score=30.60 Aligned_cols=114 Identities=11% Similarity=0.103 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhcCCCcceEEEEeC-C--CCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEec-CCCHHHHH
Q 045156 85 QWNRIVDDLSKEGKLRNCKAICDV-S--GSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVE-GDDLKSKT 160 (319)
Q Consensus 85 qW~~lv~~l~~~g~~~~~I~v~Dv-S--GSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~-g~~l~ekv 160 (319)
...+.+..|++.|.+..+|+|+-. | .+|+=..=.+++++|=++...-+. -+|-|.+ ++ .......+
T Consensus 204 tva~vv~tL~e~gAmdyTiVV~AsASd~a~lqYLaPy~g~a~aE~f~~~G~d----vLIVyDD------LsKhA~AYRei 273 (504)
T COG0056 204 TVANVVRTLEEHGAMDYTIVVAASASDSAPLQYLAPYAGCAMAEYFRDNGKD----VLIVYDD------LSKHAVAYREI 273 (504)
T ss_pred HHHHHHHHHHHcCCccceEEEEecCCcchhhhhhhhhhhhHHHHHHHhcCCe----EEEEecC------chHHHHHHHHH
Confidence 344567777778999999987655 2 233334445677888777766555 6777776 42 23333444
Q ss_pred HHhhcCCccccccHHHHH---HHHHHHHHhCCCC-------------------hhhccceEEEEecCccc
Q 045156 161 RFVSNVNWDMNTDFQEVF---DLILEVAVNGNLK-------------------PEQMIKRLFVFSDMEFD 208 (319)
Q Consensus 161 ~~i~~~~~g~nTnl~~vf---~~IL~~A~k~~l~-------------------~e~mpk~v~V~SDmqFd 208 (319)
.-+.+-+.|.------|| .++|++|-|-+=. ....|..|+=|||+|.=
T Consensus 274 SLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e~g~GSiTALPIIETqagDvSAyIpTNVISITDGQIf 343 (504)
T COG0056 274 SLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIETQAGDVSAYIPTNVISITDGQIF 343 (504)
T ss_pred HHHhcCCCCccCCCCceeehhHHHHHHHHhhccccCCCceEeeeeEEeccCceeeecccceEEecCCcEE
Confidence 445555555432222344 6889988643311 12479999999999953
No 86
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=32.76 E-value=1.1e+02 Score=24.45 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHhCCCChhhccceEEEEecC
Q 045156 173 DFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDM 205 (319)
Q Consensus 173 nl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDm 205 (319)
-...||+-|-....+.+++.+++++--+.++||
T Consensus 27 Q~~~v~~ni~~~L~~aG~~~~dVv~~~iyl~d~ 59 (101)
T cd06155 27 QMESIFSKLREILQSNGLSLSDILYVTLYLRDM 59 (101)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCH
Confidence 455678888888888999999999999999998
No 87
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=32.62 E-value=1.8e+02 Score=28.10 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=51.4
Q ss_pred eEEEEecCccccccC-----CCCcchHHHHHHHH-----------HhcCCCCCCCeEEEEeCCCC-CCCCcccCCCCeEE
Q 045156 198 RLFVFSDMEFDEASL-----HPWETDYQAIVRKY-----------TEKGYGSAVPEIIFWNLRHS-KSTPVPEGQEGVAL 260 (319)
Q Consensus 198 ~v~V~SDmqFd~a~~-----~~w~t~~e~i~~ky-----------~~~Gy~~~~P~ivfWNl~~~-~~~Pv~~~~~gv~L 260 (319)
||||-.|||==..-. .....+|++.++.+ .++|.+ +|+-+|=-|+ ++.+...-.+.+.|
T Consensus 2 KiyISaDiEGiaGV~~~~~~~~~~~~Y~r~r~~MT~evnAaiega~~aGa~----eIvV~DsHg~~~Nll~e~L~~~a~l 77 (263)
T cd08770 2 KVYISADIEGIAGISSWDETTLGGPDYEEFREQMTKEVVAACEGAIEAGAT----EIVVKDAHGSGRNILPSKLPDNVKL 77 (263)
T ss_pred eEEEEeCCCCCCCCCChHHcCCCCchHHHHHHHHHHHHHHHHHHHHHcCCc----EEEEEcCCCCccCcChHHCCcceEE
Confidence 799999998543322 12235587766644 245666 7999998887 78888888999999
Q ss_pred EeccCHHHHHHHH
Q 045156 261 VSGFSKILIKLFL 273 (319)
Q Consensus 261 VSG~S~~i~k~~l 273 (319)
|+|+.++-+-|+-
T Consensus 78 I~G~~~rp~~Mm~ 90 (263)
T cd08770 78 IRGWSGHPYCMVE 90 (263)
T ss_pred EeCCCCCcchHhh
Confidence 9999966665544
No 88
>KOG3752 consensus Ribonuclease H [Replication, recombination and repair]
Probab=32.59 E-value=1.4e+02 Score=30.33 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=63.4
Q ss_pred eEEEEeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEecCCCHHHHHHHhhcCCccccccHHHHHH--
Q 045156 102 CKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNWDMNTDFQEVFD-- 179 (319)
Q Consensus 102 ~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~g~~l~ekv~~i~~~~~g~nTnl~~vf~-- 179 (319)
.++-||.|-|=+|++- |-.|+=+-|+++|+.-.- .+..-|--||+.+=|.
T Consensus 213 ~vvytDGS~~~ng~~~----------------~~AGyGvywg~~~e~N~s------------~pv~~g~qtNnrAEl~Av 264 (371)
T KOG3752|consen 213 QVVYTDGSSSGNGRKS----------------SRAGYGVYWGPGHELNVS------------GPLAGGRQTNNRAELIAA 264 (371)
T ss_pred eEEEecCccccCCCCC----------------CcceeEEeeCCCCccccc------------ccCCCCcccccHHHHHHH
Confidence 6677999888777654 567787889999876211 1223466788887664
Q ss_pred -HHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 180 -LILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 180 -~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
..|+.|.+.+.. +|.|.||.++=- +..+.|-+-|+++||+
T Consensus 265 ~~ALkka~~~~~~------kv~I~TDS~~~i-------~~l~~wv~~~k~~~~k 305 (371)
T KOG3752|consen 265 IEALKKARSKNIN------KVVIRTDSEYFI-------NSLTLWVQGWKKNGWK 305 (371)
T ss_pred HHHHHHHHhcCCC------cEEEEechHHHH-------HHHHHHHhhhccCccc
Confidence 567777776644 799999998843 3344677888998998
No 89
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=32.54 E-value=1.3e+02 Score=29.15 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=50.1
Q ss_pred eEEEEecCccccccC-----CCCcchHHHHHHHH-----------HhcCCCCCCCeEEEEeCCCC-CCCCcccCCCCeEE
Q 045156 198 RLFVFSDMEFDEASL-----HPWETDYQAIVRKY-----------TEKGYGSAVPEIIFWNLRHS-KSTPVPEGQEGVAL 260 (319)
Q Consensus 198 ~v~V~SDmqFd~a~~-----~~w~t~~e~i~~ky-----------~~~Gy~~~~P~ivfWNl~~~-~~~Pv~~~~~gv~L 260 (319)
||||-.|||==.... .+...+|++.++.+ .++|.+ +|+-+|=-|+ ++++...-.+.+.|
T Consensus 2 KiyISaDmEGiaGv~~~~~~~~~~~~Y~r~r~~mT~evnAaiega~~aGa~----eVvV~DsHg~~~Nll~e~L~~~a~L 77 (266)
T cd08663 2 KIYISADMEGVTGVVSPEQVRPGGREYERARRLMTDEVNAAIEGALEAGAT----EVLVNDSHGSMRNLLPEDLDPRARL 77 (266)
T ss_pred eEEEEecCCCCCCCCCHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHcCCc----EEEEEcCCCCccCcChHHCCccEEE
Confidence 799999998643322 12235587766644 245665 8999998887 78888888899999
Q ss_pred EeccCHHHHHHHH
Q 045156 261 VSGFSKILIKLFL 273 (319)
Q Consensus 261 VSG~S~~i~k~~l 273 (319)
|+|+. .-+-|+-
T Consensus 78 I~G~p-kp~~Mm~ 89 (266)
T cd08663 78 ISGSP-KPLGMME 89 (266)
T ss_pred EecCC-CCchhhh
Confidence 99977 5555543
No 90
>PRK11281 hypothetical protein; Provisional
Probab=30.54 E-value=92 Score=35.91 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=44.2
Q ss_pred CCccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccc-----------c-CCCCc---chHHHHHHHHHhcC
Q 045156 166 VNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEA-----------S-LHPWE---TDYQAIVRKYTEKG 230 (319)
Q Consensus 166 ~~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a-----------~-~~~w~---t~~e~i~~ky~~~G 230 (319)
...+|++|+.+|-+.+++.|.++..--++-+..|+ |++ |.+. + .+.|. .-+..|++.|+++|
T Consensus 1000 vgV~Y~sDi~~v~~iL~eaa~~~p~Vl~~P~P~V~-~~~--fgdssi~~~lr~wv~~~~~~~~v~s~L~~~I~~~f~e~G 1076 (1113)
T PRK11281 1000 VGVAYGSDLEKVRELLLQAATENPRVMKEPEPQVF-FLN--FGASTLDHELRLYVRELGDRSPTVDELNRRIDRLFREND 1076 (1113)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCcccccCCCCEEE-EEe--ccCceEEEEEEEEEcCHhhHHHHHHHHHHHHHHHHHHCC
Confidence 46789999999999999999876432222222333 332 3221 1 11222 24577999999999
Q ss_pred CCCCCCeEE
Q 045156 231 YGSAVPEII 239 (319)
Q Consensus 231 y~~~~P~iv 239 (319)
-+-..|+..
T Consensus 1077 IeIpfPq~~ 1085 (1113)
T PRK11281 1077 INIAFNQLD 1085 (1113)
T ss_pred CcCCCCCee
Confidence 984456543
No 91
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=28.63 E-value=2.8e+02 Score=34.87 Aligned_cols=129 Identities=22% Similarity=0.192 Sum_probs=77.3
Q ss_pred CcceEEEEeCCCCCCC-----Ch----HHHHHHHHHHHhhhccCCcccEEEEeCCCceE-EEec-CCCHHHHHHHhhcCC
Q 045156 99 LRNCKAICDVSGSVHG-----TP----LEVSVALGLLVSELSEEPWKGKLITFGEKPEL-HLVE-GDDLKSKTRFVSNVN 167 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g-----~p----~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~-~~l~-g~~l~ekv~~i~~~~ 167 (319)
.-.++|.+|-|-||+- .. --|.++|++|= -| .-.++-|+++|++ |... .-+-..-++.+....
T Consensus 4392 ~yqvmisiddsksmses~~~~la~etl~lvtkals~le----~g--~iav~kfge~~~~lh~fdkqfs~esg~~~f~~f~ 4465 (4600)
T COG5271 4392 TYQVMISIDDSKSMSESGSTVLALETLALVTKALSLLE----VG--QIAVMKFGEQPELLHPFDKQFSSESGVQMFSHFT 4465 (4600)
T ss_pred eeEEEEEecccccccccCceeeehHHHHHHHHHHHHHh----hc--cEEEEecCCChhhhCchhhhhcchHHHHHHHhhc
Confidence 3446778999999973 22 23455555542 12 2378899999995 4443 223333455455544
Q ss_pred c-cccccHHHHHH---HHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCCCCCCeEEEEeC
Q 045156 168 W-DMNTDFQEVFD---LILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNL 243 (319)
Q Consensus 168 ~-g~nTnl~~vf~---~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~~~~P~ivfWNl 243 (319)
+ ..|||..+--+ .+.+.|...-. .|.-.--|||||+- ..+|+.|++--++|-=+ ---|||-=+
T Consensus 4466 feqs~tnv~~l~~~s~k~f~~a~t~~h--~d~~qleiiisdgi---------cedhdsi~kllrra~e~--kvmivfvil 4532 (4600)
T COG5271 4466 FEQSNTNVLALADASMKCFNYANTASH--HDIRQLEIIISDGI---------CEDHDSIRKLLRRAQEE--KVMIVFVIL 4532 (4600)
T ss_pred hhcccccHHHHHHHHHHHHHHhhhhcc--cchheeEEEeecCc---------ccchHHHHHHHHHhhhc--ceEEEEEEe
Confidence 3 46799877654 56666543211 12333458999982 24688888888776666 455777666
Q ss_pred CCC
Q 045156 244 RHS 246 (319)
Q Consensus 244 ~~~ 246 (319)
.+-
T Consensus 4533 d~v 4535 (4600)
T COG5271 4533 DNV 4535 (4600)
T ss_pred cCC
Confidence 553
No 92
>smart00467 GS GS motif. Aa approx. 30 amino acid motif that precedes the kinase domain in types I and II TGF beta receptors. Mutation of two or more of the serines or threonines in the TTSGSGSG of TGF-beta type I receptor impairs phosphorylation and signaling activity.
Probab=27.61 E-value=45 Score=22.01 Aligned_cols=17 Identities=41% Similarity=0.513 Sum_probs=12.8
Q ss_pred CCCCCCCChHHHHHHHH
Q 045156 108 VSGSVHGTPLEVSVALG 124 (319)
Q Consensus 108 vSGSM~g~p~dvaiaL~ 124 (319)
.|||++|.|+-+=-.++
T Consensus 11 tSGSGSG~p~LvqRTia 27 (30)
T smart00467 11 TSGSGSGLPLLVQRTVA 27 (30)
T ss_pred cCCCCCCchhHHHHHHh
Confidence 79999999887654443
No 93
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=26.63 E-value=1.6e+02 Score=27.73 Aligned_cols=129 Identities=16% Similarity=0.232 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHhhcCCCcceEEEEeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEE--eCCCce--EEEecCC
Q 045156 79 FQVAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLIT--FGEKPE--LHLVEGD 154 (319)
Q Consensus 79 ~~~~e~qW~~lv~~l~~~g~~~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~It--Fs~~p~--~~~l~g~ 154 (319)
.+..|..|-.+++.++..| ..++++---+.+|.+--+.-...+|+-++..+ -+-.+.+.. |.+.+. ..--.
T Consensus 79 ~~lie~~~~~~i~~lq~~~--~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~-~~~~~~~~~~~~~~~~~~~~~~~~-- 153 (252)
T PF11019_consen 79 MELIESDVPNIINSLQNKG--IPVIALTARGPNMEDWTLRELKSLGIDFSSSS-FPEDGIISFPVFDSALSRAPSFYD-- 153 (252)
T ss_pred eEEcchhHHHHHHHHHHCC--CcEEEEcCCChhhHHHHHHHHHHCCCCccccc-cccCcceecccccCCCCCCceeec--
Confidence 4678889999999987554 45677766677777777777777888876665 112222211 111111 10011
Q ss_pred CHHHHHHHhhcCCccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCCCC
Q 045156 155 DLKSKTRFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSA 234 (319)
Q Consensus 155 ~l~ekv~~i~~~~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~~~ 234 (319)
..=+.++.+-..++..+|.. + ..+|++|+++.|.+ .+-+.+.+.++..|..
T Consensus 154 ----------GIlft~~~~KG~~L~~fL~~-----~--~~~pk~IIfIDD~~----------~nl~sv~~a~k~~~I~-- 204 (252)
T PF11019_consen 154 ----------GILFTGGQDKGEVLKYFLDK-----I--NQSPKKIIFIDDNK----------ENLKSVEKACKKSGID-- 204 (252)
T ss_pred ----------CeEEeCCCccHHHHHHHHHH-----c--CCCCCeEEEEeCCH----------HHHHHHHHHHhhCCCc--
Confidence 22245566666888877775 1 23799999999873 4677788888887777
Q ss_pred CCeEEEE
Q 045156 235 VPEIIFW 241 (319)
Q Consensus 235 ~P~ivfW 241 (319)
.=-+.|=
T Consensus 205 f~G~~Yt 211 (252)
T PF11019_consen 205 FIGFHYT 211 (252)
T ss_pred EEEEEEc
Confidence 4444443
No 94
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=25.86 E-value=1.3e+02 Score=22.78 Aligned_cols=49 Identities=10% Similarity=0.138 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHH----Hhhc--CCCcceEEEEeCCCCCCC-----ChHHHHHHHHHHH
Q 045156 79 FQVAELQWNRIVDD----LSKE--GKLRNCKAICDVSGSVHG-----TPLEVSVALGLLV 127 (319)
Q Consensus 79 ~~~~e~qW~~lv~~----l~~~--g~~~~~I~v~DvSGSM~g-----~p~dvaiaL~lll 127 (319)
|.+---.||..... +|.+ ....+..+++|.++||.. .+.+-+++.+..+
T Consensus 14 D~~r~I~Wk~sAr~~~l~vk~~~~~~~~~~~i~ld~~~~~~~~~~~~~~~e~~l~~a~~l 73 (86)
T PF01882_consen 14 DPLRRIHWKASARTGELMVKEFEEERSQPVWIVLDLSPSMYFGSNGRSKFERALSAAASL 73 (86)
T ss_pred CchHHhhHHHHhCCCCcEEEEeecccCCcEEEEEECCCccccCcCCCCHHHHHHHHHHHH
Confidence 44556689887763 2222 235678899999999975 5666666555554
No 95
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=25.49 E-value=69 Score=31.93 Aligned_cols=65 Identities=17% Similarity=0.321 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHHHHHhCCCChhh-ccceEEEEecC----ccccccCCCCcchHHHHHHHHH-hcCCCCCCCeEEEEeCCC
Q 045156 172 TDFQEVFDLILEVAVNGNLKPEQ-MIKRLFVFSDM----EFDEASLHPWETDYQAIVRKYT-EKGYGSAVPEIIFWNLRH 245 (319)
Q Consensus 172 Tnl~~vf~~IL~~A~k~~l~~e~-mpk~v~V~SDm----qFd~a~~~~w~t~~e~i~~ky~-~~Gy~~~~P~ivfWNl~~ 245 (319)
.++...+..+|..-++++ .. .|++|+|+=|+ ||+.... ..-..+++.++ ..+|. |++.|-=+.-
T Consensus 221 ~~l~~~~~~~L~~y~~~~---~~~~P~~IiiyRDGvsegq~~~v~~----~e~~~i~~a~~~~~~~~---p~it~Ivv~K 290 (393)
T cd02826 221 QDLGEVIKKCLDGFKKST---GEGLPEKIVIYRDGVSEGEFKRVKE----EVEEIIKEACEIEESYR---PKLVIIVVQK 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHc---CCCCcceeEEEecCCCHHHHHHHHH----HHHHHHHHHHhhCCCCC---CCEEEEEEec
Confidence 567888888888777665 34 89999998654 4444321 22233444443 22455 9999977765
Q ss_pred C
Q 045156 246 S 246 (319)
Q Consensus 246 ~ 246 (319)
+
T Consensus 291 r 291 (393)
T cd02826 291 R 291 (393)
T ss_pred c
Confidence 4
No 96
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=24.87 E-value=1.7e+02 Score=28.28 Aligned_cols=69 Identities=10% Similarity=0.178 Sum_probs=40.9
Q ss_pred CccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCcccccc-----------CCCCc---chHHHHHHHHHhcCCC
Q 045156 167 NWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEAS-----------LHPWE---TDYQAIVRKYTEKGYG 232 (319)
Q Consensus 167 ~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~-----------~~~w~---t~~e~i~~ky~~~Gy~ 232 (319)
..+|++|+++|-+.+.+.+.+...--++ |.-.+.+++ |.+.+ .+.|. .-.+.+++.|+++|.+
T Consensus 191 ~V~y~~d~~~~~~il~~~~~~~~~vl~~-p~p~v~~~~--~~dssi~~~v~~wv~~~~~~~~~~~~~~~I~~~f~~~gI~ 267 (286)
T PRK10334 191 GVAYDSDIDQVKQILTNIIQSEDRILKD-REMTVRLNE--LGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGIS 267 (286)
T ss_pred EecCCCCHHHHHHHHHHHHHhCCceecC-CCCEEEEEe--eeCceEEEEEEEEEecchhHHHHHHHHHHHHHHHHHCCCc
Confidence 5788999999999998888765432222 222233332 33321 11121 2345688999999999
Q ss_pred CCCCeE
Q 045156 233 SAVPEI 238 (319)
Q Consensus 233 ~~~P~i 238 (319)
-..|+.
T Consensus 268 ip~p~~ 273 (286)
T PRK10334 268 FPYPQM 273 (286)
T ss_pred CCCCCe
Confidence 223343
No 97
>PRK07394 hypothetical protein; Provisional
Probab=24.11 E-value=4.2e+02 Score=26.25 Aligned_cols=48 Identities=4% Similarity=-0.104 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhcCCC--cceEEEEeCCCCCCCChHHHHHHHHHHHhhhc
Q 045156 84 LQWNRIVDDLSKEGKL--RNCKAICDVSGSVHGTPLEVSVALGLLVSELS 131 (319)
Q Consensus 84 ~qW~~lv~~l~~~g~~--~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~ 131 (319)
.-++++-++....... ...+.+|++.|.=...-..++.+.++++|..-
T Consensus 63 G~~~a~~~~~~~~~~~~~~~~~d~~GtggDG~~~t~NiSt~aA~v~A~~G 112 (342)
T PRK07394 63 GMLDTYDELGPKLQSPSNQRPPIVFGMPYDGRSRTAPIYPLTALILAAAG 112 (342)
T ss_pred HHHHHHHHhCCCCCCCCCCCceeEEeCCCCCCCCCcccHHHHHHHHHHCC
Confidence 3577777754333221 23678899886433246788888899998763
No 98
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=23.62 E-value=1e+02 Score=31.14 Aligned_cols=66 Identities=12% Similarity=0.317 Sum_probs=44.0
Q ss_pred cccHHHHHHHHHHHHHhCCCChhhccceEEEEecC----ccccccCCCCcchHHHHHHHHHh--cCCCCCCCeEEEEeCC
Q 045156 171 NTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDM----EFDEASLHPWETDYQAIVRKYTE--KGYGSAVPEIIFWNLR 244 (319)
Q Consensus 171 nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDm----qFd~a~~~~w~t~~e~i~~ky~~--~Gy~~~~P~ivfWNl~ 244 (319)
..++...+..+|..-.+.+ ...|++|+|+=|+ ||.... ..+.+.|++.+++ .+|. |++.|=-+.
T Consensus 276 ~~~l~~~~~~~l~~y~~~~---~~~P~~IiiyRdGvsegq~~~v~----~~E~~~i~~a~~~~~~~~~---p~it~ivv~ 345 (448)
T cd04658 276 IDSLGKSMKKALKAYKKEN---KKLPSRIIIYRDGVGDGQLKKVK----EYEVPQIKKAIKQYSENYS---PKLAYIVVN 345 (448)
T ss_pred HHHHHHHHHHHHHHHHHHh---CCCCceEEEEecCCCHHHHHHHH----HHHHHHHHHHHHHhCCCCC---CCEEEEEEe
Confidence 4567777766666655543 3479999998776 454321 2567778888874 3565 899887776
Q ss_pred CC
Q 045156 245 HS 246 (319)
Q Consensus 245 ~~ 246 (319)
-+
T Consensus 346 Kr 347 (448)
T cd04658 346 KR 347 (448)
T ss_pred cc
Confidence 43
No 99
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.44 E-value=94 Score=25.46 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=23.0
Q ss_pred EeccCHHHHHHHHhCCCccchhhHhhhhhhcccccCCCHH
Q 045156 261 VSGFSKILIKLFLENEGVIDQEQVVEAGITENKKKQIDPV 300 (319)
Q Consensus 261 VSG~S~~i~k~~l~~~g~~~~~~~~~~~~~~~~~~~~~P~ 300 (319)
.|||.|++++.+--|+ . +||.-|.-.--.|++.++|.
T Consensus 30 ~~gy~PtV~D~L~rCd--T-~EEAlEii~yleKrGEi~~E 66 (98)
T COG4003 30 FSGYNPTVIDFLRRCD--T-EEEALEIINYLEKRGEITPE 66 (98)
T ss_pred cCCCCchHHHHHHHhC--c-HHHHHHHHHHHHHhCCCCHH
Confidence 6899999999999884 2 22221110012566677776
No 100
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=22.81 E-value=4.3e+02 Score=21.62 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=38.7
Q ss_pred CCCcceEEEEeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEecCCCHHHHHHHhhcCCccccccHHH
Q 045156 97 GKLRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNWDMNTDFQE 176 (319)
Q Consensus 97 g~~~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~g~~l~ekv~~i~~~~~g~nTnl~~ 176 (319)
......|+++|.= .|+|..++..+.. . .+.++.+.|-++.=-++.+..... +.++..
T Consensus 55 ~~~~~viil~Dl~---GGSp~n~~~~~~~----~--------------~~~~~visG~nlpmlle~~~~~~~--~~~~~e 111 (122)
T cd00006 55 DSGEGVLILTDLF---GGSPNNAAARLSM----E--------------HPPVEVIAGVNLPMLLEAARAREL--GLSLDE 111 (122)
T ss_pred CCCCcEEEEEeCC---CCCHHHHHHHHHh----c--------------CCCEEEEEccCHHHHHHHHHcccc--CCCHHH
Confidence 4456799999983 3567777654331 0 123455677666545554544333 346777
Q ss_pred HHHHHHHHH
Q 045156 177 VFDLILEVA 185 (319)
Q Consensus 177 vf~~IL~~A 185 (319)
..+.+++.+
T Consensus 112 ~~~~~~~~~ 120 (122)
T cd00006 112 LVENALEAG 120 (122)
T ss_pred HHHHHHHhc
Confidence 777766654
No 101
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=21.50 E-value=94 Score=28.51 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=36.7
Q ss_pred ceEEEEeCCCC-C-CCChHHHHHHHHHHHhhhccC-CcccEEEEeCCCceEEEec
Q 045156 101 NCKAICDVSGS-V-HGTPLEVSVALGLLVSELSEE-PWKGKLITFGEKPELHLVE 152 (319)
Q Consensus 101 ~~I~v~DvSGS-M-~g~p~dvaiaL~lllae~~~~-~~~~~~ItFs~~p~~~~l~ 152 (319)
.++.++|+|.. . +|..-.+.-+|--.+..++.+ .-+-.||||++.-.++.+.
T Consensus 5 ~y~FvID~s~~av~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~ 59 (243)
T PF04811_consen 5 VYVFVIDVSYEAVQSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLS 59 (243)
T ss_dssp EEEEEEE-SHHHHHHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETT
T ss_pred EEEEEEECchhhhhccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECC
Confidence 36789999854 3 356666777777777777733 3677999999988888774
No 102
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=20.91 E-value=1.9e+02 Score=22.24 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=34.8
Q ss_pred hhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCCC
Q 045156 192 PEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRHSKSTP 250 (319)
Q Consensus 192 ~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~~~~P~ivfWNl~~~~~~P 250 (319)
|+.-|+.+++|+=+--+. ...|+.+.+.+.+.||. ++-||.+|.+..+
T Consensus 11 p~~~~k~~v~i~HG~~eh------~~ry~~~a~~L~~~G~~-----V~~~D~rGhG~S~ 58 (79)
T PF12146_consen 11 PENPPKAVVVIVHGFGEH------SGRYAHLAEFLAEQGYA-----VFAYDHRGHGRSE 58 (79)
T ss_pred CCCCCCEEEEEeCCcHHH------HHHHHHHHHHHHhCCCE-----EEEECCCcCCCCC
Confidence 333378888887664222 13688899999999999 8999999985443
Done!