Query 045156
Match_columns 319
No_of_seqs 141 out of 184
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 18:19:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nvo_A RO sixty-related protei 99.9 9.6E-27 3.3E-31 235.5 18.8 242 11-275 259-529 (535)
2 1yvr_A RO autoantigen, 60-kDa 99.8 1.7E-19 5.9E-24 181.9 16.7 244 8-275 263-533 (538)
3 2x31_A Magnesium-chelatase 60 99.0 2.5E-09 8.6E-14 91.5 10.9 110 98-209 4-115 (189)
4 3ibs_A Conserved hypothetical 98.9 5.7E-08 1.9E-12 84.5 14.7 161 98-275 10-187 (218)
5 1shu_X Anthrax toxin receptor 98.8 4.6E-08 1.6E-12 82.5 11.5 125 99-232 6-136 (182)
6 2xgg_A Microneme protein 2; A/ 98.8 1.2E-07 4.1E-12 81.0 13.3 128 98-232 16-153 (178)
7 1q0p_A Complement factor B; VO 98.7 8E-08 2.7E-12 83.4 11.2 111 99-209 15-141 (223)
8 3n2n_F Anthrax toxin receptor 98.7 4.7E-08 1.6E-12 82.7 9.2 127 99-232 7-139 (185)
9 1ijb_A VON willebrand factor; 98.6 8E-07 2.7E-11 77.5 13.7 129 99-232 13-148 (202)
10 1atz_A VON willebrand factor; 98.6 5.6E-07 1.9E-11 77.0 12.5 125 99-232 5-137 (189)
11 4hqf_A Thrombospondin-related 98.6 5.3E-07 1.8E-11 82.6 12.5 127 99-232 21-159 (281)
12 4hqo_A Sporozoite surface prot 98.5 6.2E-07 2.1E-11 81.9 12.5 127 99-232 18-156 (266)
13 4fx5_A VON willebrand factor t 98.5 3.5E-07 1.2E-11 91.0 10.4 107 97-208 75-192 (464)
14 1mf7_A Integrin alpha M; cell 98.5 1.3E-07 4.5E-12 81.2 6.2 124 100-232 6-138 (194)
15 1n3y_A Integrin alpha-X; alpha 98.4 6.9E-07 2.4E-11 76.4 9.1 125 99-232 9-142 (198)
16 1v7p_C Integrin alpha-2; snake 98.4 5.1E-06 1.8E-10 71.8 13.9 124 100-232 7-139 (200)
17 1mjn_A Integrin alpha-L; rossm 98.4 6.1E-07 2.1E-11 76.8 7.7 105 101-208 4-116 (179)
18 2b2x_A Integrin alpha-1; compu 98.4 4E-06 1.4E-10 73.8 13.0 125 99-232 22-155 (223)
19 4b4t_W RPN10, 26S proteasome r 98.4 6.5E-06 2.2E-10 77.0 15.1 127 99-232 3-138 (268)
20 1pt6_A Integrin alpha-1; cell 98.4 4.3E-06 1.5E-10 72.9 13.1 125 99-232 7-140 (213)
21 2odp_A Complement C2; C3/C5 co 98.3 1.1E-06 3.8E-11 86.3 9.4 111 99-209 9-138 (509)
22 3zqk_A VON willebrand factor; 98.3 1.5E-06 5.3E-11 75.5 7.8 109 97-206 19-136 (199)
23 3hrz_D Complement factor B; se 98.3 4.6E-06 1.6E-10 85.4 12.4 111 99-209 243-369 (741)
24 1rrk_A Complement factor B; BB 98.3 3.6E-06 1.2E-10 82.1 10.6 109 101-209 3-127 (497)
25 2x5n_A SPRPN10, 26S proteasome 97.9 0.00022 7.5E-09 62.8 14.5 135 99-245 2-145 (192)
26 3rag_A Uncharacterized protein 97.7 0.00016 5.6E-09 66.8 9.9 86 98-186 133-226 (242)
27 3k6s_A Integrin alpha-X; cell 97.5 0.00024 8.2E-09 77.6 10.0 125 100-232 131-263 (1095)
28 1jey_B KU80; double-strand DNA 97.3 0.0022 7.7E-08 64.9 13.7 130 97-232 5-160 (565)
29 2ww8_A RRGA, cell WALL surface 97.0 0.0018 6.3E-08 69.4 9.7 109 99-209 224-392 (893)
30 1jey_A KU70; double-strand DNA 95.4 0.08 2.7E-06 54.2 10.9 131 100-232 36-199 (609)
31 2iue_A Pactolus I-domain; memb 95.3 0.099 3.4E-06 47.2 9.9 107 101-210 5-119 (212)
32 3fcs_B Integrin beta-3; beta p 93.0 0.11 3.7E-06 54.4 6.0 109 100-210 112-257 (690)
33 3vi3_B Integrin beta-1; beta p 92.2 0.25 8.5E-06 49.4 6.9 108 100-210 123-265 (454)
34 3t3p_B Integrin beta-3; integr 91.8 0.37 1.3E-05 48.3 7.8 110 99-210 111-257 (472)
35 3k6s_B Integrin beta-2; cell r 91.2 0.13 4.3E-06 53.9 3.9 108 100-210 105-248 (687)
36 3v4v_B Integrin beta-7; cell a 90.3 0.32 1.1E-05 49.2 5.7 164 99-275 132-366 (503)
37 1pcx_A Protein transport prote 71.9 9.2 0.00031 40.5 8.1 53 100-152 188-244 (810)
38 1hi9_A Dciaa, dipeptide transp 65.7 13 0.00045 34.6 6.9 73 198-275 2-91 (274)
39 2yha_A Post-transcriptional ge 50.4 15 0.00052 35.3 4.7 65 173-246 213-286 (388)
40 1m2v_B SEC24, protein transpor 46.6 60 0.0021 35.0 8.9 53 100-152 304-360 (926)
41 2yhb_A QDE-2, post-transcripti 44.7 22 0.00075 34.9 4.9 65 173-246 213-286 (437)
42 1pdo_A Mannose permease; phosp 37.5 1.6E+02 0.0053 23.6 9.0 75 91-188 50-124 (135)
43 3ic4_A Glutaredoxin (GRX-1); s 32.3 82 0.0028 22.4 5.3 28 245-274 64-91 (92)
44 3bed_A PTS system, IIA compone 30.9 2.1E+02 0.0071 23.0 10.0 70 93-188 56-125 (142)
45 2nut_A Protein transport prote 27.7 48 0.0016 34.7 4.4 52 100-153 133-184 (769)
46 2vv5_A MSCS, small-conductance 26.1 76 0.0026 28.9 5.0 73 167-240 191-275 (286)
47 4f3t_A Protein argonaute-2; hy 22.7 55 0.0019 34.8 3.7 62 172-244 642-710 (861)
48 3r3p_A MobIle intron protein; 22.6 90 0.0031 24.4 4.1 41 197-243 40-81 (105)
No 1
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=99.94 E-value=9.6e-27 Score=235.46 Aligned_cols=242 Identities=15% Similarity=0.133 Sum_probs=185.7
Q ss_pred ccCCCCCCCCchHHHHHHHhHHHHhhh------chHHHHHHHHHHhhcccccccCCCChHHHHHHhh---hcCc------
Q 045156 11 ANKWDLLPYRKVASLAMKVYTKTFMKH------DGPRFIKYLTDVKVGKAKISTGALLPHGIIKSVN---HETE------ 75 (319)
Q Consensus 11 ~~~w~~i~Y~rvpS~Am~~y~~aF~k~------D~erf~~yl~~v~~G~aki~~~~l~P~eiv~~~~---~~~~------ 75 (319)
++.|+.| +.++|+.||.+|.+.|.+| |.+|++++++.+. ++.+|+.+.++|+.+..+++ .|.+
T Consensus 259 ~~~W~~L-i~~mp~~AllrNlr~~~~~g~~~~~~~~~~e~v~~~L~-d~~~v~~s~~~Pf~~~~a~r~y~~G~dd~r~id 336 (535)
T 2nvo_A 259 AEVYRAA-MQTNGLTWLLRNLGNLGRVGVLTPNDSATVQAVIERLT-DPAALKRGRIHPLDALKARLVYAQGQGVRGKGT 336 (535)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHHHHHTTSSCTTCHHHHHHHHHHHT-CHHHHHHTTCCHHHHHHHHHHHHTSBCSTTCCB
T ss_pred HHHHHHH-HHCCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhC-CHhhHhhcCCCcHHHHHHHHHhhcccCccCCCC
Confidence 7889888 6699999999999999999 6669999999998 67799999999999999887 2210
Q ss_pred ---hhh-hHHHHHHHHHHHHHHhhcCCCcceEEEEeCCCCCCC---------ChHHHHHHHHHHHhhhccCCcccEEEEe
Q 045156 76 ---FAL-FQVAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHG---------TPLEVSVALGLLVSELSEEPWKGKLITF 142 (319)
Q Consensus 76 ---~~~-~~~~e~qW~~lv~~l~~~g~~~~~I~v~DvSGSM~g---------~p~dvaiaL~lllae~~~~~~~~~~ItF 142 (319)
.+. .+.++..-.....++. ....++++++||||||.+ +++++|.+|++.+...+. +..+++|
T Consensus 337 W~~~ar~~~al~~a~~~~~~~~~--~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d---~v~lv~F 411 (535)
T 2nvo_A 337 WLPVPRVVDALEEAFTLAFGNVQ--PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEP---DALTMGF 411 (535)
T ss_dssp CCCCHHHHHHHHHHHHHHGGGCC--CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSS---EEEEEEE
T ss_pred CcccHHHHHHHHHHHHHHhhcCC--CCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCC---ceEEEEE
Confidence 011 1112222222222222 235678889999999975 468889999988776555 6799999
Q ss_pred CCCceEEEec-CCCHHHHHHHhhcCCccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHH
Q 045156 143 GEKPELHLVE-GDDLKSKTRFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQA 221 (319)
Q Consensus 143 s~~p~~~~l~-g~~l~ekv~~i~~~~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~ 221 (319)
|+.+..+.+. ..++.+.++.+.... +++||+..+++.+ .+.+. -++.||||||++||.+.. +.++
T Consensus 412 s~~~~~~~~~~~~~l~~~l~~l~~~~-~ggTdi~~~l~~a----~~~~~----~~~~vIliTD~~~~~g~~----~~~~- 477 (535)
T 2nvo_A 412 AEQFRPLGITPRDTLESAMQKAQSVS-FGGTDCAQPILWA----AQERL----DVDTFVVYTDNETWAGQV----HPTV- 477 (535)
T ss_dssp BSSEEECCCCTTCCHHHHHHHTCCSS-BCCCCTTHHHHHH----HHTTC----CCSEEEEEESSCCCCCSS----CHHH-
T ss_pred CCcceEcCCCcchhHHHHHHHHhhCC-CCCccHHHHHHHH----HHhcC----CCCEEEEEeCCCccCCCC----CHHH-
Confidence 9976555554 478989999886655 6799999996554 44332 368999999999997533 3344
Q ss_pred HHHHHHhcCCCCCCCeEEEEeCCCCCCCCcccCCCCeEEEeccCHHHHHHHHhC
Q 045156 222 IVRKYTEKGYGSAVPEIIFWNLRHSKSTPVPEGQEGVALVSGFSKILIKLFLEN 275 (319)
Q Consensus 222 i~~ky~~~Gy~~~~P~ivfWNl~~~~~~Pv~~~~~gv~LVSG~S~~i~k~~l~~ 275 (319)
..++|++.+.. -|++|+|++++++..|++..+.|+.+|+|||+++++.+-+-
T Consensus 478 al~~~r~~~~~--~~klv~i~l~~~~~~~~~~~~~~~~~i~g~se~~l~~Ia~~ 529 (535)
T 2nvo_A 478 ALDQYAQKMGR--APKLIVVGLTATEFSIADPQRRDMLDVVGFDAAAPNVMTAF 529 (535)
T ss_dssp HHHHHHHHHSC--CCEEEEEETTCSCCCCSCTTCSSEEEEEECCTTHHHHHHHH
T ss_pred HHHHHHHhhCC--CCeEEEEeccCCCcccCCCCCCCceeeeCCCHHHHHHHHHH
Confidence 55889887555 59999999999999999889999999999999999998754
No 2
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=99.82 E-value=1.7e-19 Score=181.87 Aligned_cols=244 Identities=12% Similarity=0.148 Sum_probs=176.2
Q ss_pred cccccCCCCCCCCchHHHHHHHhHHHHhhhc-----hHHHHHHHHHHhhcccccccCCCChHHHHHHhh---hcCc----
Q 045156 8 YMTANKWDLLPYRKVASLAMKVYTKTFMKHD-----GPRFIKYLTDVKVGKAKISTGALLPHGIIKSVN---HETE---- 75 (319)
Q Consensus 8 ~ms~~~w~~i~Y~rvpS~Am~~y~~aF~k~D-----~erf~~yl~~v~~G~aki~~~~l~P~eiv~~~~---~~~~---- 75 (319)
.++.+.|..+ +.++|..||.+|-+.|.+++ .++.+++++.+.. +.++..+.++|+.+..++. .+.+
T Consensus 263 ~~~~~~we~l-~~~~~~~allrnlr~~~~~g~~~~~~~~~~~v~~~L~~-~~~v~~s~~~P~~~~~a~r~y~~g~~~~~~ 340 (538)
T 1yvr_A 263 LKSKEIWKSL-LQDMPLTALLRNLGKMTADSVLAPASSEVSSVCERLTN-EKLLKKARIHPFHILVALETYKKGHGNRGK 340 (538)
T ss_dssp GGCHHHHHHH-HHTCCHHHHHHHHHHHHHTTTTCTTCHHHHHHHHHHTC-HHHHHHTTCCHHHHHHHHHHHHHCC-----
T ss_pred cCCHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-HHhHhhccCCcHHHHHHHHHhhccCCcCCC
Confidence 6788999888 78999999999999999988 7799999999998 7788889999999999887 3310
Q ss_pred --hhh-hH---HHHHHHHHHHHHHhhcCCCcceEEEEeCCCCCCCC-------hHHHHHHHHHHHhhhccCCcccEEEEe
Q 045156 76 --FAL-FQ---VAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHGT-------PLEVSVALGLLVSELSEEPWKGKLITF 142 (319)
Q Consensus 76 --~~~-~~---~~e~qW~~lv~~l~~~g~~~~~I~v~DvSGSM~g~-------p~dvaiaL~lllae~~~~~~~~~~ItF 142 (319)
... .. .++.........++ ....++++++|+||||.+. ..++|.++++.....+ -+..+|+|
T Consensus 341 i~w~~~~r~~~al~~~~~~~~~~~~--~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~---d~vglv~F 415 (538)
T 1yvr_A 341 LRWIPDTSIVEALDNAFYKSFKLVE--PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTE---KDSHMVAF 415 (538)
T ss_dssp CCCCCCHHHHHHHHHHHHHTSCCCC--CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHC---SSEEEEEE
T ss_pred cCCCcchhHHHHHHHHHHHHHhhcC--CCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccC---CceEEEEE
Confidence 000 11 11211111111111 2356889999999999852 2444555555444322 25689999
Q ss_pred CCCceEEEec-CCCHHHHHHHhhcCCccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHH
Q 045156 143 GEKPELHLVE-GDDLKSKTRFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQA 221 (319)
Q Consensus 143 s~~p~~~~l~-g~~l~ekv~~i~~~~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~ 221 (319)
++....+.++ ..++.+.++.+... +|++||+..++...++. ..-++.||||||++++... .+...
T Consensus 416 s~~~~~~~~t~~~~l~~~l~~l~~~-~~GgT~i~~aL~~a~~~--------~~~~~~iIliTDg~~~~g~-----~~~~~ 481 (538)
T 1yvr_A 416 SDEMLPCPITVNMLLHEVVEKMSDI-TMGSTDCALPMLWAQKT--------NTAADIFIVFTDCETNVED-----VHPAT 481 (538)
T ss_dssp SSSEECCSCCTTSCHHHHHHHHTTC-CCSCCCTTHHHHHHHHT--------TCCCSEEEEEECCCCCSSS-----CCHHH
T ss_pred CCCceEcCCCCcccHHHHHHHHhcC-CCCCCcHHHHHHHHHhc--------cCCCCEEEEEcCCCCCCCC-----CCHHH
Confidence 9854433343 35788888888765 78899999988877654 1235789999999987632 22334
Q ss_pred HHHHHHhc-CCCCCCCeEEEEeCCCCCCCCcccCCCCeEEEeccCHHHHHHHHhC
Q 045156 222 IVRKYTEK-GYGSAVPEIIFWNLRHSKSTPVPEGQEGVALVSGFSKILIKLFLEN 275 (319)
Q Consensus 222 i~~ky~~~-Gy~~~~P~ivfWNl~~~~~~Pv~~~~~gv~LVSG~S~~i~k~~l~~ 275 (319)
..++|++. |.. +++|.|++.+++..|+.....|+..|+|||+.+|+.+-+-
T Consensus 482 ~l~~~~~~~~~~---v~l~~igig~~~~~~~~~~~~~~~~i~g~~e~~l~~Ia~~ 533 (538)
T 1yvr_A 482 ALKQYREKMGIP---AKLIVCAMTSNGFSIADPDDRGMLDICGFDSGALDVIRNF 533 (538)
T ss_dssp HHHHHHHHHTCC---CEEEEEECSSSSEESSCTTCTTEEEEETTCTTHHHHHHHH
T ss_pred HHHHHHHHhCCC---cEEEEEEecCCCCcccCCCCCCceeeccCCHHHHHHHHHH
Confidence 45667654 887 7899999999877788788999999999999999998753
No 3
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.99 E-value=2.5e-09 Score=91.46 Aligned_cols=110 Identities=16% Similarity=0.085 Sum_probs=79.9
Q ss_pred CCcceEEEEeCCCCCCCChHHHHHHHHHHHh-hhccCCcccEEEEeCC-CceEEEecCCCHHHHHHHhhcCCccccccHH
Q 045156 98 KLRNCKAICDVSGSVHGTPLEVSVALGLLVS-ELSEEPWKGKLITFGE-KPELHLVEGDDLKSKTRFVSNVNWDMNTDFQ 175 (319)
Q Consensus 98 ~~~~~I~v~DvSGSM~g~p~dvaiaL~llla-e~~~~~~~~~~ItFs~-~p~~~~l~g~~l~ekv~~i~~~~~g~nTnl~ 175 (319)
...+.++++|+||||.|.+++.+......+. .+..+.-+-.+|+|++ .++++.-...+...-.+.+.....+++|++.
T Consensus 4 ~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~T~~~ 83 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQGLPGGGGTPLA 83 (189)
T ss_dssp SCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTTTCSCHHHHHHHHHHCCCCBCCCCH
T ss_pred CCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecCCCCCHHHHHHHHhcCCCCCCCCHH
Confidence 3467889999999999999999888777775 4424446778999997 4543221234555555666777888999999
Q ss_pred HHHHHHHHHHHhCCCChhhccceEEEEecCcccc
Q 045156 176 EVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDE 209 (319)
Q Consensus 176 ~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~ 209 (319)
.++...++...+..-+ .-++.|+++||++.+.
T Consensus 84 ~al~~a~~~l~~~~~~--~~~~~ivliTDG~~~~ 115 (189)
T 2x31_A 84 SGMEMAMVTAKQARSR--GMTPTIALLTDGRGNI 115 (189)
T ss_dssp HHHHHHHHHHHTCTTT--CSSEEEEECCBSCCSS
T ss_pred HHHHHHHHHHHhccCC--CCceEEEEECCCCCCC
Confidence 9999999887765322 3578999999998765
No 4
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=5.7e-08 Score=84.45 Aligned_cols=161 Identities=18% Similarity=0.130 Sum_probs=107.1
Q ss_pred CCcceEEEEeCCCCCCCC-----hHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEecC---CCHHHHHHHhhc-CCc
Q 045156 98 KLRNCKAICDVSGSVHGT-----PLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEG---DDLKSKTRFVSN-VNW 168 (319)
Q Consensus 98 ~~~~~I~v~DvSGSM~g~-----p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~g---~~l~ekv~~i~~-~~~ 168 (319)
...+.++++|+||||.+. +++.+......+.....+ -+-.+++|++++..+.-.. ..+.+.++.+.. ...
T Consensus 10 ~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~~-~~v~lv~F~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 88 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELDN-DKVGMIVFAGDAFTQLPITSDYISAKMFLESISPSLIS 88 (218)
T ss_dssp CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCSS-CEEEEEEESSSEEEEEEEESCHHHHHHHHHTCCGGGCC
T ss_pred CCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCCC-CeEEEEEECCCceEeCCCCCCHHHHHHHHHhcCcccCC
Confidence 356789999999999974 888888776666433333 5678999999988653322 234444443322 223
Q ss_pred cccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCCCCCCeEEEEeCCCC--
Q 045156 169 DMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRHS-- 246 (319)
Q Consensus 169 g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~~~~P~ivfWNl~~~-- 246 (319)
+++|++..++...++..... ..-++.|++|||++-+.. ....+.+..++.|.. ++-.-+...
T Consensus 89 ~g~T~l~~al~~a~~~l~~~----~~~~~~ivllTDG~~~~~-------~~~~~~~~~~~~~i~-----v~~igig~~~~ 152 (218)
T 3ibs_A 89 KQGTAIGEAINLATRSFTPQ----EGVGRAIIVITDGENHEG-------GAVEAAKAAAEKGIQ-----VSVLGVGMPEG 152 (218)
T ss_dssp SCSCCHHHHHHHHHTTSCSC----SSCCEEEEEEECCTTCCS-------CHHHHHHHHHTTTEE-----EEEEEESCTTC
T ss_pred CCCCcHHHHHHHHHHHHhhC----CCCCcEEEEEcCCCCCCC-------cHHHHHHHHHhcCCE-----EEEEEecCCCC
Confidence 68899999999887654332 245789999999976532 345566667776655 444455443
Q ss_pred CCCCc------ccCCCCeEEEeccCHHHHHHHHhC
Q 045156 247 KSTPV------PEGQEGVALVSGFSKILIKLFLEN 275 (319)
Q Consensus 247 ~~~Pv------~~~~~gv~LVSG~S~~i~k~~l~~ 275 (319)
..+|+ ..+..|-.++|......|+-+.+.
T Consensus 153 ~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~ 187 (218)
T 3ibs_A 153 APIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKD 187 (218)
T ss_dssp EECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHH
T ss_pred CcccccCCCceeEcCCCCEeEecCCHHHHHHHHHh
Confidence 22232 245667778889999999999865
No 5
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.78 E-value=4.6e-08 Score=82.51 Aligned_cols=125 Identities=15% Similarity=0.100 Sum_probs=83.2
Q ss_pred CcceEEEEeCCCCCCCChHH---HHHHHHHHHhhhccCCcccEEEEeCCCceEEE-ecC--CCHHHHHHHhhcCCccccc
Q 045156 99 LRNCKAICDVSGSVHGTPLE---VSVALGLLVSELSEEPWKGKLITFGEKPELHL-VEG--DDLKSKTRFVSNVNWDMNT 172 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~d---vaiaL~lllae~~~~~~~~~~ItFs~~p~~~~-l~g--~~l~ekv~~i~~~~~g~nT 172 (319)
.-+.++++|+||||.+.... .+..+.. .+-.+.-+-.+++|+++++.+. +.. ..+.+.++.+.....+++|
T Consensus 6 ~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~---~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~T 82 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANNWIEIYNFVQQLAE---RFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGET 82 (182)
T ss_dssp CEEEEEEEECSGGGGGGHHHHHHHHHHHHH---HCCCTTEEEEEEEESSSEEEEEEEECCHHHHHHHHHHHHTCCCCSCC
T ss_pred ceeEEEEEECCCCcccCHHHHHHHHHHHHH---HhcCCCceEEEEEeCCCceEEECCCCCHHHHHHHHHhcccCCCCCCc
Confidence 45788999999999986553 3333333 2222336668899999988543 322 4566667767666678899
Q ss_pred cHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 173 DFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 173 nl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
++..++..+++...... ...-++.|+++||++-+. .+........+..++.|..
T Consensus 83 ~~~~al~~a~~~l~~~~--~~~~~~~iiliTDG~~~~----~~~~~~~~~~~~~~~~~i~ 136 (182)
T 1shu_X 83 YIHEGLKLANEQIQKAG--GLKTSSIIIALTDGKLDG----LVPSYAEKEAKISRSLGAS 136 (182)
T ss_dssp CHHHHHHHHHHHHHHHT--GGGSCEEEEEEECCCCCT----THHHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHHHHHHHhcc--CCCCCeEEEEECCCCcCC----CCchhHHHHHHHHHhCCCE
Confidence 99999998888765542 234678999999997642 1112234455566776655
No 6
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.76 E-value=1.2e-07 Score=81.00 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=87.0
Q ss_pred CCcceEEEEeCCCCCCCChHHHHHHHH-HHHhhhccC--CcccEEEEeCCCceEEEe-cC-C--CHHHHHHHhhcCC-cc
Q 045156 98 KLRNCKAICDVSGSVHGTPLEVSVALG-LLVSELSEE--PWKGKLITFGEKPELHLV-EG-D--DLKSKTRFVSNVN-WD 169 (319)
Q Consensus 98 ~~~~~I~v~DvSGSM~g~p~dvaiaL~-lllae~~~~--~~~~~~ItFs~~p~~~~l-~g-~--~l~ekv~~i~~~~-~g 169 (319)
...+.++++|+||||.+..++.++... -++..+..+ .-+-.+|+|++++....- .. . +..+-.+.+.+.. .|
T Consensus 16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~ 95 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNAVDKQLAAHAVLDMPYKK 95 (178)
T ss_dssp TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTSGGGSCHHHHHHHHHHCCCCC
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCCCCccCHHHHHHHHHhCCCCC
Confidence 356789999999999987777666543 344666533 356789999999885432 22 2 4445555566665 58
Q ss_pred ccccHHHHHHHHHHHHHh--CCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 170 MNTDFQEVFDLILEVAVN--GNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 170 ~nTnl~~vf~~IL~~A~k--~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
++|++..+++.+++.... ++- ....++.|+++||++-+.. .......++.++.|..
T Consensus 96 g~T~~~~aL~~a~~~l~~~~~g~-r~~~~~~iillTDG~~~~~------~~~~~~~~~l~~~gi~ 153 (178)
T 2xgg_A 96 GSTNTSDGLKACKQILFTGSRPG-REHVPKLVIGMTDGESDSD------FRTVRAAKEIRELGGI 153 (178)
T ss_dssp CCCCHHHHHHHHHHHHHHCCCTT-CTTSCEEEEEEESSCCCHH------HHHSHHHHHHHHTTCE
T ss_pred CCccHHHHHHHHHHHhcCcccCC-CCCCCEEEEEEcCCCCCCC------ccHHHHHHHHHHCCCE
Confidence 899999999998886432 222 2357899999999976532 2344566677776655
No 7
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.72 E-value=8e-08 Score=83.41 Aligned_cols=111 Identities=11% Similarity=0.127 Sum_probs=76.2
Q ss_pred CcceEEEEeCCCCCCCChHHHHHHHHHHH-hhhccC-C-cccEEEEeCCCceEEEe----cCCCHHHHHHHhhcCC----
Q 045156 99 LRNCKAICDVSGSVHGTPLEVSVALGLLV-SELSEE-P-WKGKLITFGEKPELHLV----EGDDLKSKTRFVSNVN---- 167 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~~-~-~~~~~ItFs~~p~~~~l----~g~~l~ekv~~i~~~~---- 167 (319)
--+.++++|+||||.+..++.++....-+ ..+... + -+-.+++|++++..+.- ...+..+-.+.+.++.
T Consensus 15 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 94 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDH 94 (223)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCTTSC
T ss_pred ceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccccCCCCCHHHHHHHHHhcccccc
Confidence 45788999999999998888887654444 445432 2 46789999999987642 1222233333344544
Q ss_pred -ccccccHHHHHHHHHHHHHhCCC-Ch---hhccceEEEEecCcccc
Q 045156 168 -WDMNTDFQEVFDLILEVAVNGNL-KP---EQMIKRLFVFSDMEFDE 209 (319)
Q Consensus 168 -~g~nTnl~~vf~~IL~~A~k~~l-~~---e~mpk~v~V~SDmqFd~ 209 (319)
.|++||+..++..+++.....+- .+ ...++.||+|||++-+.
T Consensus 95 ~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~ 141 (223)
T 1q0p_A 95 KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNM 141 (223)
T ss_dssp SCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCS
T ss_pred cCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCC
Confidence 47899999999998887653321 11 35678899999997654
No 8
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.71 E-value=4.7e-08 Score=82.66 Aligned_cols=127 Identities=15% Similarity=0.060 Sum_probs=80.8
Q ss_pred CcceEEEEeCCCCCCCCh---HHHHHHHHHHHhhhccCCcccEEEEeCCCceEEE-ecC--CCHHHHHHHhhcCCccccc
Q 045156 99 LRNCKAICDVSGSVHGTP---LEVSVALGLLVSELSEEPWKGKLITFGEKPELHL-VEG--DDLKSKTRFVSNVNWDMNT 172 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p---~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~-l~g--~~l~ekv~~i~~~~~g~nT 172 (319)
--+.+.++|+||||.+.- .+.+..+. ..+-.+.-+-.+++|+++++.+. +.. ..+.+.++.+.....|++|
T Consensus 7 ~~div~vlD~SgSM~~~~~~~~~~~~~~~---~~~~~~~~~v~lv~f~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~g~T 83 (185)
T 3n2n_F 7 GFDLYFILDKSGSVLHHWNEIYYFVEQLA---HKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDT 83 (185)
T ss_dssp EEEEEEEEECSGGGGGGHHHHHHHHHHHH---HHCCCTTEEEEEEEESSSEEEEEEEECCHHHHHHHHHHHHTCCCCSCC
T ss_pred CeeEEEEEeCCCChhhhHHHHHHHHHHHH---HHhCCCCcEEEEEEEecCceEEeccCCCHHHHHHHHHHHhhhcCCCCc
Confidence 346789999999998731 22232222 23322336678999999998653 332 4566677767665568999
Q ss_pred cHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 173 DFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 173 nl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
++..+++..++......-....-++.|+++||++-... +........+..++.|..
T Consensus 84 ~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~----~~~~~~~~~~~~~~~gi~ 139 (185)
T 3n2n_F 84 YMHEGFERASEQIYYENRQGYRTASVIIALTDGELHED----LFFYSEREANRSRDLGAI 139 (185)
T ss_dssp CHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHH----HHHHHHHHHHHHHHTTEE
T ss_pred cHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCC----cccchHHHHHHHHHCCCE
Confidence 99999998877553211111235889999999975321 111224566677777765
No 9
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.58 E-value=8e-07 Score=77.45 Aligned_cols=129 Identities=12% Similarity=0.098 Sum_probs=83.0
Q ss_pred CcceEEEEeCCCCCCCChHHHHHHHHHHH-hhhccCC--cccEEEEeCCCceEEE-ecC-CCHHHHHHHhhcCCc-cc-c
Q 045156 99 LRNCKAICDVSGSVHGTPLEVSVALGLLV-SELSEEP--WKGKLITFGEKPELHL-VEG-DDLKSKTRFVSNVNW-DM-N 171 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~~~--~~~~~ItFs~~p~~~~-l~g-~~l~ekv~~i~~~~~-g~-n 171 (319)
-.+.+.++|+||||.+..++.++....-+ ..+.-++ -+-.+|+|+++++.+. +.. .+..+-.+.+.+..+ |+ .
T Consensus 13 ~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~l~~~gg~~ 92 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQV 92 (202)
T ss_dssp CEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCCBSC
T ss_pred cccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCCCCCHHHHHHHHHhCcCCCCCc
Confidence 35678899999999987777776644444 5555222 4668899999998643 322 344334444566655 44 4
Q ss_pred ccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 172 TDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 172 Tnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
|++..++..+++..-..+-. ..-++.|+|+||++-+... ........+..++.|..
T Consensus 93 T~~~~aL~~a~~~~~~~~~r-~~~~~~iillTDG~~~~~~----~~~~~~~a~~l~~~gi~ 148 (202)
T 1ijb_A 93 ASTSEVLKYTLFQIFSKIDR-PEASRIALLLMASQEPQRM----SRNFVRYVQGLKKKKVI 148 (202)
T ss_dssp CCHHHHHHHHHHHTSSSCSC-TTSEEEEEEEECCCCCGGG----CTTHHHHHHHHHHTTEE
T ss_pred CcHHHHHHHHHHHHhccCCC-CCCCeEEEEEccCCCCccc----hHHHHHHHHHHHHCCCE
Confidence 99999998877543222212 3468899999999764321 12344455666776655
No 10
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.58 E-value=5.6e-07 Score=77.04 Aligned_cols=125 Identities=8% Similarity=0.071 Sum_probs=83.2
Q ss_pred CcceEEEEeCCCCCCCChHHHHHHHHH-HHhhhccCC--cccEEEEeCCCceEEEe-c-CCCHHHHHHHhhcCC-ccccc
Q 045156 99 LRNCKAICDVSGSVHGTPLEVSVALGL-LVSELSEEP--WKGKLITFGEKPELHLV-E-GDDLKSKTRFVSNVN-WDMNT 172 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~dvaiaL~l-llae~~~~~--~~~~~ItFs~~p~~~~l-~-g~~l~ekv~~i~~~~-~g~nT 172 (319)
.-+.+.++|+||||.+..++.++.... ++..+..+| -+-.+|+|+++++.+.- . ..+..+-.+.+.+.. .|++|
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~g~T 84 (189)
T 1atz_A 5 PLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKAHLLSLVDVMQREGGPS 84 (189)
T ss_dssp CEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCCCCC
T ss_pred ceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCCCCCHHHHHHHHHhCcCCCCcc
Confidence 346889999999999888888776444 445565333 56789999999986433 1 344444444455665 48899
Q ss_pred cHHHHHHHHHHHHHhC--CCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 173 DFQEVFDLILEVAVNG--NLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 173 nl~~vf~~IL~~A~k~--~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
++..++..+++..... +-++ ..++.++|+||+.-. +. .....+..++.|..
T Consensus 85 ~~~~aL~~a~~~l~~~~~g~r~-~~~~~vivltdg~~~----~~----~~~~~~~~~~~gi~ 137 (189)
T 1atz_A 85 QIGDALGFAVRYLTSEMHGARP-GASKAVVILVTDVSV----DS----VDAAADAARSNRVT 137 (189)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCT-TSEEEEEEEECSCCS----SC----CHHHHHHHHHTTEE
T ss_pred hHHHHHHHHHHHHhccccCCCC-CCCcEEEEEeCCCCC----ch----HHHHHHHHHHCCCE
Confidence 9999999988876542 2222 356778999998431 11 23455566676655
No 11
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.57 E-value=5.3e-07 Score=82.62 Aligned_cols=127 Identities=13% Similarity=0.054 Sum_probs=85.7
Q ss_pred CcceEEEEeCCCCCCCChH-HHHHHHH-HHHhhhccC--CcccEEEEeCCCceEE-EecCC------CHHHHHHHhhc-C
Q 045156 99 LRNCKAICDVSGSVHGTPL-EVSVALG-LLVSELSEE--PWKGKLITFGEKPELH-LVEGD------DLKSKTRFVSN-V 166 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~-dvaiaL~-lllae~~~~--~~~~~~ItFs~~p~~~-~l~g~------~l~ekv~~i~~-~ 166 (319)
--+.++++|+||||.+..+ +.++... .++..+... .-+-.+|+|+++++.+ .+... .+.+.++.+.. .
T Consensus 21 ~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~~i~~l~~~~ 100 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDASKNKEKALIIIKSLLSTN 100 (281)
T ss_dssp CEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSCSSCHHHHHHHHHHHHHTT
T ss_pred ceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccCccCHHHHHHHHHHHhhcc
Confidence 4578899999999998655 6555444 444666543 3566899999999754 44321 25555665543 2
Q ss_pred CccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 167 NWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 167 ~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
..|++||+.+++..+++.....+-.+ ..++.||||||++-+. ........+..++.|..
T Consensus 101 ~~~G~T~~~~aL~~a~~~l~~~~~r~-~~~~~iillTDG~~~d------~~~~~~~~~~l~~~gv~ 159 (281)
T 4hqf_A 101 LPYGKTSLTDALLQVRKHLNDRINRE-NANQLVVILTDGIPDS------IQDSLKESRKLSDRGVK 159 (281)
T ss_dssp GGGCSCCHHHHHHHHHHHHHTSCCCT-TCEEEEEEEESSCCSC------HHHHHHHHHHHHHTTCE
T ss_pred CCCCCccHHHHHHHHHHHHHhccCCC-CCCEEEEEEecCCCCC------cHHHHHHHHHHHHCCCE
Confidence 35789999999999887766654333 3589999999997642 12344455566777765
No 12
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.55 E-value=6.2e-07 Score=81.88 Aligned_cols=127 Identities=15% Similarity=0.092 Sum_probs=83.5
Q ss_pred CcceEEEEeCCCCCCCChH-H-HHHHHHHHHhhhccCC--cccEEEEeCCCceEEEe-cCC---CHHHHHHHhhcC----
Q 045156 99 LRNCKAICDVSGSVHGTPL-E-VSVALGLLVSELSEEP--WKGKLITFGEKPELHLV-EGD---DLKSKTRFVSNV---- 166 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~-d-vaiaL~lllae~~~~~--~~~~~ItFs~~p~~~~l-~g~---~l~ekv~~i~~~---- 166 (319)
--+.++++|+||||.+..+ + +--++.-++..+.-+| -+-.+++|+++++.+.- ... +..+-.+.+.++
T Consensus 18 ~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~ 97 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSGQSIDKRQALSKVTELRKTY 97 (266)
T ss_dssp CEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTSHHHHCHHHHHHHHHHHHHHC
T ss_pred ceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCCCCccCHHHHHHHHHHhhhcc
Confidence 3567899999999998766 2 3344455556666333 55577999999986432 211 222233334444
Q ss_pred CccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 167 NWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 167 ~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
.-|++|++.+++..+.+.....+ .....++.||||||++-+. ........++.++.|..
T Consensus 98 ~~~G~T~~~~AL~~a~~~l~~~~-~r~~~~~~iIllTDG~~~d------~~~~~~~a~~l~~~gi~ 156 (266)
T 4hqo_A 98 TPYGTTSMTAALDEVQKHLNDRV-NREKAIQLVILMTDGVPNS------KYRALEVANKLKQRNVR 156 (266)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTTC-SCTTSEEEEEEEECSCCSC------HHHHHHHHHHHHHTTCE
T ss_pred CCCCCCCHHHHHHHHHHHHhhcc-ccCCCCeEEEEEccCCCCC------chHHHHHHHHHHHCCCE
Confidence 46889999999998877766643 2345689999999997652 12444556667777765
No 13
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.51 E-value=3.5e-07 Score=91.04 Aligned_cols=107 Identities=13% Similarity=0.048 Sum_probs=79.4
Q ss_pred CCCcceEEEEeCCCCCC--CChHHHHHHHHHHH-hhhccCCcccEEEEeCCCceEEEec--------CCCHHHHHHHhhc
Q 045156 97 GKLRNCKAICDVSGSVH--GTPLEVSVALGLLV-SELSEEPWKGKLITFGEKPELHLVE--------GDDLKSKTRFVSN 165 (319)
Q Consensus 97 g~~~~~I~v~DvSGSM~--g~p~dvaiaL~lll-ae~~~~~~~~~~ItFs~~p~~~~l~--------g~~l~ekv~~i~~ 165 (319)
+.--+.++|+|+||||. +.+++.++.....+ ..+..+ -+-.+|+|+++++.+.-. ..+..+-.+.+.+
T Consensus 75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~-drv~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~~ 153 (464)
T 4fx5_A 75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDG-AFFAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVGR 153 (464)
T ss_dssp -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTT-CEEEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHHT
T ss_pred CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCC-CEEEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHHc
Confidence 34567899999999999 89999888766665 556544 467889999999865321 1334444555677
Q ss_pred CCccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccc
Q 045156 166 VNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFD 208 (319)
Q Consensus 166 ~~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd 208 (319)
...+++||+..++...++...+.. .-++.||+|||++-+
T Consensus 154 L~~~GgT~l~~aL~~A~~~l~~~~----~~~~~IILLTDG~~~ 192 (464)
T 4fx5_A 154 LHANGGTAMGRWLAQAGRIFDTAP----SAIKHAILLTDGKDE 192 (464)
T ss_dssp CCCCSCCCHHHHHHHHHHHHTTCT----TSEEEEEEEESSCCT
T ss_pred CCCCCCCcHHHHHHHHHHHHhcCC----CCCCEEEEEcCCCCC
Confidence 778999999999999888765421 347899999999754
No 14
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.50 E-value=1.3e-07 Score=81.20 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=79.7
Q ss_pred cceEEEEeCCCCCCCChHHHHHHHH-HHHhhhccCCcccEEEEeCCCceEEEe-c----CCCHHHHHHHhhcCC-ccccc
Q 045156 100 RNCKAICDVSGSVHGTPLEVSVALG-LLVSELSEEPWKGKLITFGEKPELHLV-E----GDDLKSKTRFVSNVN-WDMNT 172 (319)
Q Consensus 100 ~~~I~v~DvSGSM~g~p~dvaiaL~-lllae~~~~~~~~~~ItFs~~p~~~~l-~----g~~l~ekv~~i~~~~-~g~nT 172 (319)
-+.+.++|+||||.+..++.++... -++..+..+..+-.+++|+++++.+.- . ...+.+. +.+.. .|++|
T Consensus 6 ~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l~~~~~~~~~~~~---i~~l~~~~g~T 82 (194)
T 1mf7_A 6 SDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSL---VKPITQLLGRT 82 (194)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHHHHHHSCCHHHH---HTTCCCCCSCB
T ss_pred eeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEecCCcCCHHHHHHH---HHhCcCCCCCc
Confidence 4678899999999987766666543 344555533467789999999986432 1 1345544 44555 48899
Q ss_pred cHHHHHHHHHHHHH--hCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 173 DFQEVFDLILEVAV--NGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 173 nl~~vf~~IL~~A~--k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
++..+++.+++... .++-+ ..-++.|+|+||++-+. +. ..+....++.++.|..
T Consensus 83 ~~~~aL~~a~~~l~~~~~~~r-~~~~~~iillTDG~~~~---d~--~~~~~~~~~~~~~gi~ 138 (194)
T 1mf7_A 83 HTATGIRKVVRELFNITNGAR-KNAFKILVVITDGEKFG---DP--LGYEDVIPEADREGVI 138 (194)
T ss_dssp CHHHHHHHHHHTTTSGGGTCC-TTSEEEEEEEESSCCBS---CS--SCGGGTHHHHHHTTEE
T ss_pred hHHHHHHHHHHHhcCcccCCC-CCCCeEEEEEcCCCCCC---Cc--hhhHHHHHHHHHCCCE
Confidence 99999998876322 12222 24688999999998761 11 1122334555666654
No 15
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.44 E-value=6.9e-07 Score=76.40 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=80.1
Q ss_pred CcceEEEEeCCCCCCCChHHHHHHHHHHH-hhhccCCcccEEEEeCCCceEEEe-cC----CCHHHHHHHhhcCC-cccc
Q 045156 99 LRNCKAICDVSGSVHGTPLEVSVALGLLV-SELSEEPWKGKLITFGEKPELHLV-EG----DDLKSKTRFVSNVN-WDMN 171 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~~~~~~~~ItFs~~p~~~~l-~g----~~l~ekv~~i~~~~-~g~n 171 (319)
..+.++++|+||||.+..++..+..+..+ ..+..+.-+-.+++|+++++.+.- .. ..+.+.+ .+.. .|++
T Consensus 9 ~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~i---~~l~~~~g~ 85 (198)
T 1n3y_A 9 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLL---ASVHQLQGF 85 (198)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHHHHHHCSSGGGGG---TTCCCCCSC
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecCccCCHHHHHHHH---hcCcCCCCC
Confidence 34788999999999986666555544444 555434467789999999876432 11 3444443 3433 6789
Q ss_pred ccHHHHHHHHHHHH-Hh-CCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 172 TDFQEVFDLILEVA-VN-GNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 172 Tnl~~vf~~IL~~A-~k-~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
|++..++..+++.. .. ++-+ ..-++.|+||||++-+.. ........+..++.|..
T Consensus 86 T~~~~al~~a~~~l~~~~~~~r-~~~~~~iillTDG~~~~~-----~~~~~~~~~~~~~~gi~ 142 (198)
T 1n3y_A 86 TYTATAIQNVVHRLFHASYGAR-RDAAKILIVITDGKKEGD-----SLDYKDVIPMADAAGII 142 (198)
T ss_dssp BCHHHHHHHHHTTTTSGGGTCC-TTSEEEEEEEESSCCBSC-----SSCHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHHhCcccCCC-CCCceEEEEECCCCCCCC-----cccHHHHHHHHHHCCCE
Confidence 99999998887432 11 1111 345789999999976521 12344555666777765
No 16
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.40 E-value=5.1e-06 Score=71.77 Aligned_cols=124 Identities=14% Similarity=0.138 Sum_probs=81.0
Q ss_pred cceEEEEeCCCCCCCChHHHHHHHHHHH-hhhcc--CCcccEEEEeCCCceEEE-ec-CCCHHHHHHHhhcCC-ccc-cc
Q 045156 100 RNCKAICDVSGSVHGTPLEVSVALGLLV-SELSE--EPWKGKLITFGEKPELHL-VE-GDDLKSKTRFVSNVN-WDM-NT 172 (319)
Q Consensus 100 ~~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~--~~~~~~~ItFs~~p~~~~-l~-g~~l~ekv~~i~~~~-~g~-nT 172 (319)
-+.+.++|+||||. +++.++....-+ ..+.. +.-+-.+++|+++++.+. +. ..+..+-.+.+.++. .|+ +|
T Consensus 7 ~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~G~~T 84 (200)
T 1v7p_C 7 IDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLT 84 (200)
T ss_dssp EEEEEEEECCTTCC--CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTCSSHHHHHHHHHHCCCCCCSCC
T ss_pred ccEEEEEECCCCcc--cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCCCcCCHHHHHHHHHhhhccCCCCC
Confidence 46788999999998 366555544444 44542 235668899999998643 33 245555556666665 455 69
Q ss_pred cHHHHHHHHHHHHH--hCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 173 DFQEVFDLILEVAV--NGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 173 nl~~vf~~IL~~A~--k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
++..++..+++..- .++-+ ...++.|+++||++-+. ........++.++.|..
T Consensus 85 ~~~~al~~a~~~~~~~~~g~r-~~~~~~ivllTDG~~~~------~~~~~~~~~~~~~~gi~ 139 (200)
T 1v7p_C 85 NTFGAIQYARKYAYSAASGGR-RSATKVMVVVTDGESHD------GSMLKAVIDQCNHDNIL 139 (200)
T ss_dssp CHHHHHHHHHHHTTSGGGTCC-TTSEEEEEEEESSCCSC------GGGHHHHHHHHHHTTEE
T ss_pred cHHHHHHHHHHhhcccccCCC-CCCCeEEEEEccCCCCC------cccHHHHHHHHHHCCCE
Confidence 99999998887522 11222 25688999999997542 12344556667776665
No 17
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.39 E-value=6.1e-07 Score=76.77 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=69.7
Q ss_pred ceEEEEeCCCCCCCChHHHHHHHHHHH-hhhccCCcccEEEEeCCCceEEEe-cC----CCHHHHHHHhhcCCccccccH
Q 045156 101 NCKAICDVSGSVHGTPLEVSVALGLLV-SELSEEPWKGKLITFGEKPELHLV-EG----DDLKSKTRFVSNVNWDMNTDF 174 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~~~~~~~~ItFs~~p~~~~l-~g----~~l~ekv~~i~~~~~g~nTnl 174 (319)
+.+.++|+||||.+..++.++....-+ ..+..+..+-.+|+||++++.+.- .. ..+.+.++.+.. .+++|++
T Consensus 4 divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~~~~i~~--~~g~T~~ 81 (179)
T 1mjn_A 4 DLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKH--MLLLTNT 81 (179)
T ss_dssp EEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHHHHHHHCCHHHHHTTCCC--CCBCCCH
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEcCcccCCHHHHHHHHHhccc--CCCCChH
Confidence 578899999999987666655544433 555433357789999999986522 21 244444444433 3678999
Q ss_pred HHHHHHHHHHHH--hCCCChhhccceEEEEecCccc
Q 045156 175 QEVFDLILEVAV--NGNLKPEQMIKRLFVFSDMEFD 208 (319)
Q Consensus 175 ~~vf~~IL~~A~--k~~l~~e~mpk~v~V~SDmqFd 208 (319)
..++..+++..- +++-+ ...++.++++||++-.
T Consensus 82 ~~aL~~a~~~~~~~~~g~r-~~~~~~iillTDG~~~ 116 (179)
T 1mjn_A 82 FGAINYVATEVFREELGAR-PDATKVLIIITDGEAT 116 (179)
T ss_dssp HHHHHHHHHHTSSGGGTCC-TTSEEEEEEEESSCCS
T ss_pred HHHHHHHHHHhcccccCCC-CCCCeEEEEEcCCCCC
Confidence 999998875321 12222 3468899999999754
No 18
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.39 E-value=4e-06 Score=73.79 Aligned_cols=125 Identities=11% Similarity=0.093 Sum_probs=81.5
Q ss_pred CcceEEEEeCCCCCCCChHHHHHHHHHHH-hhhc--cCCcccEEEEeCCCceEEE-ec-CCCHHHHHHHhhcCC-ccc-c
Q 045156 99 LRNCKAICDVSGSVHGTPLEVSVALGLLV-SELS--EEPWKGKLITFGEKPELHL-VE-GDDLKSKTRFVSNVN-WDM-N 171 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~--~~~~~~~~ItFs~~p~~~~-l~-g~~l~ekv~~i~~~~-~g~-n 171 (319)
..+.+.++|+||||. +++.++....-+ ..+. .+.-+-.+|+|++++..+. +. ..+..+-++.+.++. .|+ +
T Consensus 22 ~~div~vlD~SgSM~--~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~~~~~~~~~~~~i~~l~~~gG~~ 99 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIY--PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAANKIVQRGGRQ 99 (223)
T ss_dssp CEEEEEEEECSTTCC--CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTTTCCSHHHHHHHHTTCCCCCCSS
T ss_pred cceEEEEEECCCChh--hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecCCCCCHHHHHHHHHhhhccCCCC
Confidence 457889999999998 366655544433 5454 2346778999999988643 32 245555566666654 455 5
Q ss_pred ccHHHHHHHHHHHHHh--CCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 172 TDFQEVFDLILEVAVN--GNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 172 Tnl~~vf~~IL~~A~k--~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
|++..+++.+++..-. ++ .....++.|++|||++-+.. .......+..++.|..
T Consensus 100 T~~~~aL~~a~~~l~~~~~~-~~~~~~~~iillTDG~~~~~------~~~~~~~~~~~~~gi~ 155 (223)
T 2b2x_A 100 TMTALGIDTARKEAFTEARG-ARRGVKKVMVIVTDGESHDN------YRLKQVIQDCEDENIQ 155 (223)
T ss_dssp CCHHHHHHHHHHTTSSGGGT-CCTTSEEEEEEEESSCCTTG------GGHHHHHHHHHTTTEE
T ss_pred ccHHHHHHHHHHHhcCcccC-CCCCCCeEEEEEcCCCCCCC------ccHHHHHHHHHHCCCE
Confidence 9999999888764211 11 12346889999999975432 2345566667776765
No 19
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=6.5e-06 Score=77.05 Aligned_cols=127 Identities=9% Similarity=0.089 Sum_probs=86.5
Q ss_pred CcceEEEEeCCCCCCC-----ChHHHHHHH-HHHHhhhc-cCC-cccEEEEeCCC-ceEEEecCCCHHHHHHHhhcCCcc
Q 045156 99 LRNCKAICDVSGSVHG-----TPLEVSVAL-GLLVSELS-EEP-WKGKLITFGEK-PELHLVEGDDLKSKTRFVSNVNWD 169 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g-----~p~dvaiaL-~lllae~~-~~~-~~~~~ItFs~~-p~~~~l~g~~l~ekv~~i~~~~~g 169 (319)
++-+|+|+|+||||.. +.++.++.. -+++..+. .+| -+-.+|+|+.. +.+..-...+...-...+.+.+.|
T Consensus 3 lEAtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~D~~~il~aL~~l~~~ 82 (268)
T 4b4t_W 3 LEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIE 82 (268)
T ss_dssp CEEEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEESCHHHHHHHHTTCCCC
T ss_pred ceeEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcchHHHHHHHhhhcCcC
Confidence 4568999999999974 457776644 44454432 233 57789999664 555433455666666777888999
Q ss_pred ccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 170 MNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 170 ~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
++|++...+...+..++...- ..-..||+||+|.-+... ..+...+.++-++.|-.
T Consensus 83 G~T~l~~gL~~A~~aLk~~~~--k~~~~rIIlf~ds~~~~~-----~~~l~~lak~lkk~gI~ 138 (268)
T 4b4t_W 83 GKLHMATALQIAQLTLKHRQN--KVQHQRIVAFVCSPISDS-----RDELIRLAKTLKKNNVA 138 (268)
T ss_dssp SCCCHHHHHHHHHHHHHTCSC--TTSEEEEEEEECSCCSSC-----HHHHHHHHHHHHHHTEE
T ss_pred CCCChHHHHHHHHHHHHhccc--CCCceEEEEEECCCCCCC-----HHHHHHHHHHHHHcCCE
Confidence 999999999999888775532 234779999999977642 23344444555555554
No 20
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.38 E-value=4.3e-06 Score=72.94 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=81.6
Q ss_pred CcceEEEEeCCCCCCCChHHHHHHHHHH-Hhhhc--cCCcccEEEEeCCCceEEE-ec-CCCHHHHHHHhhcCC-ccc-c
Q 045156 99 LRNCKAICDVSGSVHGTPLEVSVALGLL-VSELS--EEPWKGKLITFGEKPELHL-VE-GDDLKSKTRFVSNVN-WDM-N 171 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~dvaiaL~ll-lae~~--~~~~~~~~ItFs~~p~~~~-l~-g~~l~ekv~~i~~~~-~g~-n 171 (319)
--+.++++|+||||. +++.++....- +..+. .+.-+-.+++|++++..+. +. ..+..+-++.+.+.. .|+ +
T Consensus 7 ~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~G~~ 84 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQ 84 (213)
T ss_dssp CEEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHHTCCCCCCSS
T ss_pred CccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEeccccCCHHHHHHHHHhccCCCCCc
Confidence 346889999999998 46666654433 35444 2336678999999988643 22 245555556666654 455 6
Q ss_pred ccHHHHHHHHHHHHHh--CCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 172 TDFQEVFDLILEVAVN--GNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 172 Tnl~~vf~~IL~~A~k--~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
|++..++..+++..-. ++ .....++.|+++||++-+.. .......++.++.|..
T Consensus 85 T~~~~aL~~a~~~l~~~~~~-~r~~~~~~iillTDG~~~~~------~~~~~~~~~~~~~gi~ 140 (213)
T 1pt6_A 85 TMTALGTDTARKEAFTEARG-ARRGVKKVMVIVTDGESHDN------HRLKKVIQDCEDENIQ 140 (213)
T ss_dssp CCHHHHHHHHHHTTTSGGGT-CCTTCEEEEEEEESSCCSCS------HHHHHHHHHHHHTTEE
T ss_pred ccHHHHHHHHHHHhcCcccC-CCCCCCeEEEEEcCCCCCCC------ccHHHHHHHHHHCCCE
Confidence 9999999888764211 11 12356889999999965421 2345566677777765
No 21
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.35 E-value=1.1e-06 Score=86.30 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=76.5
Q ss_pred CcceEEEEeCCCCCCCChHHHHHHHHHHH-hhhc--cCCcccEEEEeCCCceEEEecC----CCHHHHHHHhhcCCc---
Q 045156 99 LRNCKAICDVSGSVHGTPLEVSVALGLLV-SELS--EEPWKGKLITFGEKPELHLVEG----DDLKSKTRFVSNVNW--- 168 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~--~~~~~~~~ItFs~~p~~~~l~g----~~l~ekv~~i~~~~~--- 168 (319)
--+.++++|+||||.+..++.++....-+ ..+. .+--+-.+|+|+++++.+.--. .+..+-.+.+.+...
T Consensus 9 ~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~ 88 (509)
T 2odp_A 9 HLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDH 88 (509)
T ss_dssp EEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCGGGG
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEeccCCCCCCHHHHHHHHHhcccccC
Confidence 45688999999999998888877665555 5553 2336778899999998643211 244445555556654
Q ss_pred --cccccHHHHHHHHHHHHHhCCCC-------hhhccceEEEEecCcccc
Q 045156 169 --DMNTDFQEVFDLILEVAVNGNLK-------PEQMIKRLFVFSDMEFDE 209 (319)
Q Consensus 169 --g~nTnl~~vf~~IL~~A~k~~l~-------~e~mpk~v~V~SDmqFd~ 209 (319)
|++||+.++++.+++.....+-+ .++.++.||++||++.+.
T Consensus 89 ~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~ 138 (509)
T 2odp_A 89 ENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNM 138 (509)
T ss_dssp TTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCS
T ss_pred CCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccC
Confidence 38899999999887766432110 023568899999998765
No 22
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=98.28 E-value=1.5e-06 Score=75.47 Aligned_cols=109 Identities=5% Similarity=0.066 Sum_probs=73.2
Q ss_pred CCCcceEEEEeCCCCCCCChHHHHHHHHHH-Hhhhc--cCCcccEEEEeCCCceEEEe-c-CCCHHHHHHHhhcCCc-cc
Q 045156 97 GKLRNCKAICDVSGSVHGTPLEVSVALGLL-VSELS--EEPWKGKLITFGEKPELHLV-E-GDDLKSKTRFVSNVNW-DM 170 (319)
Q Consensus 97 g~~~~~I~v~DvSGSM~g~p~dvaiaL~ll-lae~~--~~~~~~~~ItFs~~p~~~~l-~-g~~l~ekv~~i~~~~~-g~ 170 (319)
..--+.+.++|+||||.+..++.++....- +..+. .+--+-.+|+||++++.+.- . ..+..+-.+.+.++.+ |+
T Consensus 19 ~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~l~~~gg 98 (199)
T 3zqk_A 19 SMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRLREIRYQGG 98 (199)
T ss_dssp CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTSCCCHHHHHHHHHHCCCCCC
T ss_pred CCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCCcCCHHHHHHHHHhCcCCCC
Confidence 345678999999999998777766654443 46664 23366789999999986533 2 2344445555666654 55
Q ss_pred -cccHHHHHHHHHHHHH--hCCCChhhccceEEEEecCc
Q 045156 171 -NTDFQEVFDLILEVAV--NGNLKPEQMIKRLFVFSDME 206 (319)
Q Consensus 171 -nTnl~~vf~~IL~~A~--k~~l~~e~mpk~v~V~SDmq 206 (319)
+|++..++..+++..- ..+-. ...++.|+++||++
T Consensus 99 ~~T~~~~aL~~a~~~l~~~~~g~r-~~~~~~iillTDG~ 136 (199)
T 3zqk_A 99 NRTNTGLALRYLSDHSFLVSQGDR-EQAPNLVYMVTGNP 136 (199)
T ss_dssp SCCCHHHHHHHCCCCCTCGGGTCC-TTSCEEEEEEECSC
T ss_pred CcChHHHHHHHHHHHhhCcccCCC-CCCCeEEEEEeCCC
Confidence 4999999987665321 11222 35688999999996
No 23
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.28 E-value=4.6e-06 Score=85.35 Aligned_cols=111 Identities=11% Similarity=0.095 Sum_probs=78.2
Q ss_pred CcceEEEEeCCCCCCCChHHHHHHHHHHH-hhhccCC--cccEEEEeCCCceEEEecC----CCHHHHHHHhhcCC----
Q 045156 99 LRNCKAICDVSGSVHGTPLEVSVALGLLV-SELSEEP--WKGKLITFGEKPELHLVEG----DDLKSKTRFVSNVN---- 167 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~~~--~~~~~ItFs~~p~~~~l~g----~~l~ekv~~i~~~~---- 167 (319)
.-+.++|+|+||||.+..++.++....-+ ..+...+ -+-.+|+|++.+..+.--. .+..+-.+.+.++.
T Consensus 243 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~ 322 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDH 322 (741)
T ss_dssp EEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHTTCCGGGG
T ss_pred ceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeecccCCcCHHHHHHHHHhcccccc
Confidence 45688999999999998888777655544 6665433 4568999999998654322 24444445556665
Q ss_pred -ccccccHHHHHHHHHHHHH----hCCCChhhccceEEEEecCcccc
Q 045156 168 -WDMNTDFQEVFDLILEVAV----NGNLKPEQMIKRLFVFSDMEFDE 209 (319)
Q Consensus 168 -~g~nTnl~~vf~~IL~~A~----k~~l~~e~mpk~v~V~SDmqFd~ 209 (319)
-|++|++.++++.+++... ...-...+.++.||||||++-+.
T Consensus 323 ~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~ 369 (741)
T 3hrz_D 323 KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNM 369 (741)
T ss_dssp SSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCS
T ss_pred cCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCcccc
Confidence 6899999999999888762 11112345788999999998764
No 24
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.26 E-value=3.6e-06 Score=82.11 Aligned_cols=109 Identities=8% Similarity=0.095 Sum_probs=72.6
Q ss_pred ceEEEEeCCCCCCCChHHHHHHHHHHH-hhhccCC--cccEEEEeCCCceEEE----ecCCC---HHHHHHHhhcC--Cc
Q 045156 101 NCKAICDVSGSVHGTPLEVSVALGLLV-SELSEEP--WKGKLITFGEKPELHL----VEGDD---LKSKTRFVSNV--NW 168 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~~~--~~~~~ItFs~~p~~~~----l~g~~---l~ekv~~i~~~--~~ 168 (319)
+.++++|+||||.+..++.++....-+ .++...+ -+-.+|+|+++++.+. ....+ +.+.++.+... ..
T Consensus 3 div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 82 (497)
T 1rrk_A 3 NIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKL 82 (497)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHHCCGGGSCC
T ss_pred eEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccccccccCHHHHHHHHHhCcCccccc
Confidence 578899999999998888887654444 5554322 5668899999998765 21223 34444433221 14
Q ss_pred cccccHHHHHHHHHHHHHh--CCCC--hhhccceEEEEecCcccc
Q 045156 169 DMNTDFQEVFDLILEVAVN--GNLK--PEQMIKRLFVFSDMEFDE 209 (319)
Q Consensus 169 g~nTnl~~vf~~IL~~A~k--~~l~--~e~mpk~v~V~SDmqFd~ 209 (319)
+++|++.+++..+++.... .+.+ ...-++.|||+||++-+.
T Consensus 83 ~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~ 127 (497)
T 1rrk_A 83 KSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNM 127 (497)
T ss_dssp TTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCS
T ss_pred cCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCccc
Confidence 6799999999998887621 1111 134678899999998664
No 25
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.93 E-value=0.00022 Score=62.82 Aligned_cols=135 Identities=13% Similarity=0.146 Sum_probs=88.9
Q ss_pred CcceEEEEeCCCCCCC-----ChHHHHHHHHHHH-hh-hccCC-cccEEEEeCCC-ceEEEecCCCHHHHHHHhhcCCcc
Q 045156 99 LRNCKAICDVSGSVHG-----TPLEVSVALGLLV-SE-LSEEP-WKGKLITFGEK-PELHLVEGDDLKSKTRFVSNVNWD 169 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g-----~p~dvaiaL~lll-ae-~~~~~-~~~~~ItFs~~-p~~~~l~g~~l~ekv~~i~~~~~g 169 (319)
++..++++|+|+||.. +.++.++..+..| .+ +...| -+-.+|+|+.+ +.++.-...+...-...+.+...+
T Consensus 2 ~e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~d~~~i~~~L~~l~~~ 81 (192)
T 2x5n_A 2 LEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVR 81 (192)
T ss_dssp CEEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEESCHHHHHHHHTTCCCC
T ss_pred ceEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCCCHHHHHHHHHcCCCC
Confidence 4568899999999974 4678887765543 32 22222 56789999984 776533344555555556667778
Q ss_pred ccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCCCCCCeEEEEeCCC
Q 045156 170 MNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRH 245 (319)
Q Consensus 170 ~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~~~~P~ivfWNl~~ 245 (319)
++|++..++....+..+...-+ .-.+||+||++..+. . ...+...+.++.++.|.. ++.+.+..
T Consensus 82 g~t~l~~aL~~A~~~l~~~~~~--~~~~riiil~~~~~~---~--~~~~~~~~a~~lk~~gi~-----v~~Ig~G~ 145 (192)
T 2x5n_A 82 GNAKFGDGIQIAQLALKHRENK--IQRQRIVAFVGSPIV---E--DEKNLIRLAKRMKKNNVA-----IDIIHIGE 145 (192)
T ss_dssp SCCCHHHHHHHHHHHHHTCSCT--TSEEEEEEEECSCCS---S--CHHHHHHHHHHHHHTTEE-----EEEEEESC
T ss_pred CCchHHHHHHHHHHHHHhcccc--CCCceEEEEEECCCC---C--CchhHHHHHHHHHHCCCE-----EEEEEeCC
Confidence 8999999999988877654311 124577777665442 1 124566677888888877 55666644
No 26
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=97.69 E-value=0.00016 Score=66.80 Aligned_cols=86 Identities=13% Similarity=0.035 Sum_probs=59.0
Q ss_pred CCcceEEEEeCCCCCCCChHHHHHHHHHHH-hhhccC--CcccEEEEeCCCc----eEE-EecCCCHHHHHHHhhcCCcc
Q 045156 98 KLRNCKAICDVSGSVHGTPLEVSVALGLLV-SELSEE--PWKGKLITFGEKP----ELH-LVEGDDLKSKTRFVSNVNWD 169 (319)
Q Consensus 98 ~~~~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~~--~~~~~~ItFs~~p----~~~-~l~g~~l~ekv~~i~~~~~g 169 (319)
...+|+.++|+||||.+ .|..+.....-+ ..+... .-+-.+|+|++++ .++ ...... ...+.+.....|
T Consensus 133 ~~~~vvfLVDtSgSM~~-kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~--~~~~~l~~L~ag 209 (242)
T 3rag_A 133 VALHLVVCLDTSASMRD-KIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV--NVAALEAELVAR 209 (242)
T ss_dssp SCEEEEEEEECSGGGTT-THHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC--CHHHHHHHCCCC
T ss_pred CCCCEEEEEECcccHHH-HHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH--HHHHHHhhCCCC
Confidence 45789999999999985 666666554443 444333 3566889999998 233 333332 222345677889
Q ss_pred ccccHHHHHHHHHHHHH
Q 045156 170 MNTDFQEVFDLILEVAV 186 (319)
Q Consensus 170 ~nTnl~~vf~~IL~~A~ 186 (319)
|+|.+.+++...++...
T Consensus 210 G~Tplg~AL~~A~~~~~ 226 (242)
T 3rag_A 210 GGTPTGPAIDHAADLLL 226 (242)
T ss_dssp SCCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 99999999998877764
No 27
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.53 E-value=0.00024 Score=77.58 Aligned_cols=125 Identities=17% Similarity=0.157 Sum_probs=83.2
Q ss_pred cceEEEEeCCCCCCCChHHHHHHHHHHH-hhhccCCcccEEEEeCCCceEEE-ec----CCCHHHHHHHhhcCCcccccc
Q 045156 100 RNCKAICDVSGSVHGTPLEVSVALGLLV-SELSEEPWKGKLITFGEKPELHL-VE----GDDLKSKTRFVSNVNWDMNTD 173 (319)
Q Consensus 100 ~~~I~v~DvSGSM~g~p~dvaiaL~lll-ae~~~~~~~~~~ItFs~~p~~~~-l~----g~~l~ekv~~i~~~~~g~nTn 173 (319)
-+.+.++|+||||.+..++.++....-+ ..+..+--+-.+|+||++++++- +. ...+.+.++.+. ..|++|+
T Consensus 131 ~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt~~~~~~~l~~ai~~i~--~~gG~T~ 208 (1095)
T 3k6s_A 131 QDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVH--QLQGFTY 208 (1095)
T ss_dssp EEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSHHHHSCSCGGGGTTTCC--CCCSCBC
T ss_pred ccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCcccCCHHHHHHHHhhhh--cccCCCh
Confidence 4678899999999998777776655444 55553336778999999998753 22 245555554443 3478999
Q ss_pred HHHHHHHHHHHHH--hCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCC
Q 045156 174 FQEVFDLILEVAV--NGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYG 232 (319)
Q Consensus 174 l~~vf~~IL~~A~--k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~ 232 (319)
+..++..+++..- ..+-+ ...++.|+|+||++-.. + ........++.++.|..
T Consensus 209 ~g~AL~~a~~~lf~~~~g~R-~~~~kviIllTDG~~~~---d--~~~~~~~a~~~r~~GI~ 263 (1095)
T 3k6s_A 209 TATAIQNVVHRLFHASYGAR-RDAAKILIVITDGKKEG---D--SLDYKDVIPMADAAGII 263 (1095)
T ss_dssp HHHHHHHHHTTTTSTTTTCC-SSSEEEEEEEESSCCBS---C--SSCHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHhhccccccCC-CCCCeEEEEEeCCCcCC---C--chhHHHHHHHHHHCCCE
Confidence 9999988876442 22222 34689999999998631 1 12344555566666755
No 28
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.33 E-value=0.0022 Score=64.90 Aligned_cols=130 Identities=12% Similarity=0.153 Sum_probs=81.6
Q ss_pred CCCcceEEEEeCCCCCCC------ChHHHHHHHHHHHhh---hccCCcccEEEEeCCCce------------E---EEec
Q 045156 97 GKLRNCKAICDVSGSVHG------TPLEVSVALGLLVSE---LSEEPWKGKLITFGEKPE------------L---HLVE 152 (319)
Q Consensus 97 g~~~~~I~v~DvSGSM~g------~p~dvaiaL~lllae---~~~~~~~~~~ItFs~~p~------------~---~~l~ 152 (319)
|.-+..+.++|+||||.. ++++.|+.....+-+ ...+--.-.+|.|+.... + ..+.
T Consensus 5 ~~ke~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l~ 84 (565)
T 1jey_B 5 GNKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLM 84 (565)
T ss_dssp -CCEEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEE
T ss_pred CCceEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecCC
Confidence 334667888999999963 578887766555533 233336678999987651 1 2221
Q ss_pred CCCHHHHHHHhhc-CCcc-ccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcC
Q 045156 153 GDDLKSKTRFVSN-VNWD-MNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKG 230 (319)
Q Consensus 153 g~~l~ekv~~i~~-~~~g-~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~G 230 (319)
. .-.+.++.+.+ ..-| .+|++..++.....+..+.-.+..---++||+|||++.... ......+.+..++.|
T Consensus 85 ~-~~~~~l~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~-----~~~~~~~a~~l~~~g 158 (565)
T 1jey_B 85 L-PDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFS-----KSQLDIIIHSLKKCD 158 (565)
T ss_dssp C-CCHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCC-----CTTHHHHHHHHHHTT
T ss_pred C-CCHHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCC-----HHHHHHHHHHHHhcC
Confidence 1 11234444544 3434 68999999988877766541111111379999999987642 235677888888888
Q ss_pred CC
Q 045156 231 YG 232 (319)
Q Consensus 231 y~ 232 (319)
-.
T Consensus 159 I~ 160 (565)
T 1jey_B 159 IS 160 (565)
T ss_dssp EE
T ss_pred cE
Confidence 76
No 29
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=97.02 E-value=0.0018 Score=69.40 Aligned_cols=109 Identities=16% Similarity=0.045 Sum_probs=64.4
Q ss_pred CcceEEEEeCCCCCCCCh------HHHHH-HHHHHHhhhcc-CCcccEEEEeCCCceE----EEecC-------------
Q 045156 99 LRNCKAICDVSGSVHGTP------LEVSV-ALGLLVSELSE-EPWKGKLITFGEKPEL----HLVEG------------- 153 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~p------~dvai-aL~lllae~~~-~~~~~~~ItFs~~p~~----~~l~g------------- 153 (319)
-.+.+.|+|+||||.+.. ++.+. ++--++..+.. +--+-.+|+||++... ..+.+
T Consensus 224 ~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n~~~ 303 (893)
T 2ww8_A 224 PLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLNDSL 303 (893)
T ss_dssp CEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEECCCT
T ss_pred CccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCcccccccccccccccccccccccccc
Confidence 456889999999999865 33222 22333344433 2256689999986532 00000
Q ss_pred ---------------------CCHHHHH----HHhhc----------CCccccccHHHHHHHHHHHHHhCCCChhhccce
Q 045156 154 ---------------------DDLKSKT----RFVSN----------VNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKR 198 (319)
Q Consensus 154 ---------------------~~l~ekv----~~i~~----------~~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~ 198 (319)
.+-.+.+ +.+.+ +.-+++|++..++...++...+.. ...-.+.
T Consensus 304 ~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~--~~~~~kv 381 (893)
T 2ww8_A 304 FWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQA--RQNSQKV 381 (893)
T ss_dssp TSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHS--CSSSEEE
T ss_pred ccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhc--ccCCCeE
Confidence 0001222 22332 223789999999998888775321 1124678
Q ss_pred EEEEecCcccc
Q 045156 199 LFVFSDMEFDE 209 (319)
Q Consensus 199 v~V~SDmqFd~ 209 (319)
||++||++=..
T Consensus 382 IILLTDG~pt~ 392 (893)
T 2ww8_A 382 IFHITDGVPTM 392 (893)
T ss_dssp EEEEESSCCSE
T ss_pred EEEEcCCCCCc
Confidence 99999997554
No 30
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=95.38 E-value=0.08 Score=54.17 Aligned_cols=131 Identities=13% Similarity=0.139 Sum_probs=78.5
Q ss_pred cceEEEEeCCCCCCC-------ChHHHHHHHHHHH-hhh--ccCCcccEEEEeCCCce-----------EEEec--CCCH
Q 045156 100 RNCKAICDVSGSVHG-------TPLEVSVALGLLV-SEL--SEEPWKGKLITFGEKPE-----------LHLVE--GDDL 156 (319)
Q Consensus 100 ~~~I~v~DvSGSM~g-------~p~dvaiaL~lll-ae~--~~~~~~~~~ItFs~~p~-----------~~~l~--g~~l 156 (319)
+.++.++|+|+||.. ++++.|+....-+ .++ +.+--.-.+|.|+.... +..+. ....
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~~~~ 115 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKR 115 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCHHH
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCCCHHH
Confidence 457788999999964 4788887766555 331 22224568899998872 23332 2223
Q ss_pred HHHHHHhhc----------CCccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHH
Q 045156 157 KSKTRFVSN----------VNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKY 226 (319)
Q Consensus 157 ~ekv~~i~~----------~~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky 226 (319)
.+.++.+.. ..-+.+|++..|+-..+++-.+.+-+. -=++||+|||++-.......-......+.+..
T Consensus 116 ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~--~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~~l 193 (609)
T 1jey_A 116 ILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKM--SHKRIMLFTNEDNPHGNDSAKASRARTKAGDL 193 (609)
T ss_dssp HHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCE--EEEEEEEEESCSCTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhh--cCCEEEEEcCCCCCCCCchHHHHHHHHHHHHH
Confidence 333333321 122468999999998888877653211 25899999998543211000002455667777
Q ss_pred HhcCCC
Q 045156 227 TEKGYG 232 (319)
Q Consensus 227 ~~~Gy~ 232 (319)
++.|..
T Consensus 194 ~~~gI~ 199 (609)
T 1jey_A 194 RDTGIF 199 (609)
T ss_dssp HHHTEE
T ss_pred HhcCcE
Confidence 887876
No 31
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=95.25 E-value=0.099 Score=47.16 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=68.9
Q ss_pred ceEEEEeCCCCCCCChHH---HHHHHHHHHhhhccCCcccEEEEeCCCceEEEec-CCCHHHHHHHhhcCCccccc-cHH
Q 045156 101 NCKAICDVSGSVHGTPLE---VSVALGLLVSELSEEPWKGKLITFGEKPELHLVE-GDDLKSKTRFVSNVNWDMNT-DFQ 175 (319)
Q Consensus 101 ~~I~v~DvSGSM~g~p~d---vaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~-g~~l~ekv~~i~~~~~g~nT-nl~ 175 (319)
+...++|+||||...--. .+..|.--++++++. ++-.|.+|-++.-.+.++ ..+..+-.+.+.+...++|- .-+
T Consensus 5 Dl~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~-~r~Gfg~f~Dk~~~~~l~lT~d~~~F~~~v~~~~vsg~~D~PE 83 (212)
T 2iue_A 5 DLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRS-GRIGFGSIVNMTFQHILKLTADSSQFQRELRKQLVSGKLATPK 83 (212)
T ss_dssp EEEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSC-EEEEEEEESSSCEEEEEEEESCHHHHHHHHHTCCCCCCSSSSB
T ss_pred EEEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcC-ceEEEEEEEcCcceecCCcCCCHHHHHHHHhhccccCCCCCCc
Confidence 346789999999985322 233333344455554 788899999885444454 24555555666677665553 346
Q ss_pred HHHHHHHHHHH---hCCCChhhccceEEEEecCccccc
Q 045156 176 EVFDLILEVAV---NGNLKPEQMIKRLFVFSDMEFDEA 210 (319)
Q Consensus 176 ~vf~~IL~~A~---k~~l~~e~mpk~v~V~SDmqFd~a 210 (319)
.+|+.|.+.++ +-++++ --+-|+++||-.|..+
T Consensus 84 ~g~dal~qa~~c~~~i~Wr~--a~rllvl~TDa~~H~~ 119 (212)
T 2iue_A 84 GQLDAVVQVAICLGEIGWRN--GTRFLVLVTDNDFHLA 119 (212)
T ss_dssp CHHHHHHHHHHCHHHHTCCS--SEEEEEEECSSCBCCT
T ss_pred hHHHHHHHHHHhhhhcccCC--ccEEEEEECcCCcccc
Confidence 66777777664 345766 3466788899999765
No 32
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=93.05 E-value=0.11 Score=54.36 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=72.5
Q ss_pred cceEEEEeCCCCCCCC---hHHHHHHHHHHHhhhccCCcccEEEEeCCCce----------E------------------
Q 045156 100 RNCKAICDVSGSVHGT---PLEVSVALGLLVSELSEEPWKGKLITFGEKPE----------L------------------ 148 (319)
Q Consensus 100 ~~~I~v~DvSGSM~g~---p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~----------~------------------ 148 (319)
-+...+.|+||||... --..+..|+--++++.+. ++-.|.+|.+.|. +
T Consensus 112 vDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~-~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~~f~f 190 (690)
T 3fcs_B 112 VDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSN-LRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGY 190 (690)
T ss_dssp EEEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSC-EEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCCCCSE
T ss_pred ccEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcC-ceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCCCccc
Confidence 4567889999999862 223344555555667766 8889999998552 1
Q ss_pred -EEec-CCCHHHHHHHhhcCCcccccc-HHHHHHHHHHHHH---hCCCChhhccceEEEEecCccccc
Q 045156 149 -HLVE-GDDLKSKTRFVSNVNWDMNTD-FQEVFDLILEVAV---NGNLKPEQMIKRLFVFSDMEFDEA 210 (319)
Q Consensus 149 -~~l~-g~~l~ekv~~i~~~~~g~nTn-l~~vf~~IL~~A~---k~~l~~e~mpk~v~V~SDmqFd~a 210 (319)
|.++ ..++.+-.+.+.+....+|-| -+..|+.|++.|+ +-+++++ --+-|+++||--|..|
T Consensus 191 ~~~l~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~-a~rllv~~TDa~~H~a 257 (690)
T 3fcs_B 191 KHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRND-ASHLLVFTTDAKTHIA 257 (690)
T ss_dssp EEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSS-SEEEEEEEESSCBCCT
T ss_pred eeecccCCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCC-ceEEEEEECCCccccC
Confidence 2232 245555566666776666644 4567999999994 6677763 2456677899998854
No 33
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=92.15 E-value=0.25 Score=49.39 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=72.3
Q ss_pred cceEEEEeCCCCCCCC---hHHHHHHHHHHHhhhccCCcccEEEEeCCCce--------------------------E-E
Q 045156 100 RNCKAICDVSGSVHGT---PLEVSVALGLLVSELSEEPWKGKLITFGEKPE--------------------------L-H 149 (319)
Q Consensus 100 ~~~I~v~DvSGSM~g~---p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~--------------------------~-~ 149 (319)
-+...+.|+||||... --..+..|+--++++.+. |+-.|.+|-+.|- + |
T Consensus 123 VDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~-~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~~~f~fr~ 201 (454)
T 3vi3_B 123 IDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSD-FRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPFSYKN 201 (454)
T ss_dssp EEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSS-EEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCCCCCCSEEE
T ss_pred eeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCC-eEEEEEEEeccccCCcccCChHHhcCCCcCccCCCCCcceee
Confidence 3456789999999873 333455556666666665 8889999988631 1 2
Q ss_pred Eec-CCCHHHHHHHhhcCCcccccc-HHHHHHHHHHHHH---hCCCChhhccceEEEEecCccccc
Q 045156 150 LVE-GDDLKSKTRFVSNVNWDMNTD-FQEVFDLILEVAV---NGNLKPEQMIKRLFVFSDMEFDEA 210 (319)
Q Consensus 150 ~l~-g~~l~ekv~~i~~~~~g~nTn-l~~vf~~IL~~A~---k~~l~~e~mpk~v~V~SDmqFd~a 210 (319)
.++ ..+..+-.+.+.+...++|-| -+..|+.|++.|+ +-+++. -=+-|+++||--|..|
T Consensus 202 ~l~LT~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~--a~rllV~~TDa~fH~a 265 (454)
T 3vi3_B 202 VLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN--VTRLLVFSTDAGFHFA 265 (454)
T ss_dssp EEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS--SEEEEEEEESSCBCCT
T ss_pred eeecCCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCcc--ceEEEEEECCCCcCcC
Confidence 232 234555556667777777754 4778999999997 567765 2344556889988875
No 34
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=91.78 E-value=0.37 Score=48.31 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=73.5
Q ss_pred CcceEEEEeCCCCCCC---ChHHHHHHHHHHHhhhccCCcccEEEEeCCCce----------------------------
Q 045156 99 LRNCKAICDVSGSVHG---TPLEVSVALGLLVSELSEEPWKGKLITFGEKPE---------------------------- 147 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g---~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~---------------------------- 147 (319)
--+...+.|+||||.. +--..+..|+--++++.+. |+-.|.+|-+.|.
T Consensus 111 pvDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~-~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~c~p~f~ 189 (472)
T 3t3p_B 111 PVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSN-LRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFG 189 (472)
T ss_dssp CEEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSC-EEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTSCCCCCCS
T ss_pred CceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcC-cEEEEEEeeccccCccccCChhhhhcCCCcccccCCCCCcc
Confidence 3455778999999986 2334456666666676665 8889999988642
Q ss_pred E-EEec-CCCHHHHHHHhhcCCcccccc-HHHHHHHHHHHHH---hCCCChhhccceEEEEecCccccc
Q 045156 148 L-HLVE-GDDLKSKTRFVSNVNWDMNTD-FQEVFDLILEVAV---NGNLKPEQMIKRLFVFSDMEFDEA 210 (319)
Q Consensus 148 ~-~~l~-g~~l~ekv~~i~~~~~g~nTn-l~~vf~~IL~~A~---k~~l~~e~mpk~v~V~SDmqFd~a 210 (319)
+ |.++ ..+..+-.+.+.+...++|-| -+.+|+.|++.|+ +-+++++ --+-|+++||--|..|
T Consensus 190 fr~~l~LT~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~-a~rllV~~TDa~~H~a 257 (472)
T 3t3p_B 190 YKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRND-ASHLLVFTTDAKTHIA 257 (472)
T ss_dssp EEEEEEEESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSS-SEEEEEEEESSCBCCT
T ss_pred eeEeeccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCC-ceEEEEEECCCCcCcC
Confidence 0 1222 134445555566776666654 4678999999995 7778763 2345666899998865
No 35
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=91.22 E-value=0.13 Score=53.86 Aligned_cols=108 Identities=18% Similarity=0.124 Sum_probs=71.0
Q ss_pred cceEEEEeCCCCCCC---ChHHHHHHHHHHHhhhccCCcccEEEEeCCCce---------------------------E-
Q 045156 100 RNCKAICDVSGSVHG---TPLEVSVALGLLVSELSEEPWKGKLITFGEKPE---------------------------L- 148 (319)
Q Consensus 100 ~~~I~v~DvSGSM~g---~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~---------------------------~- 148 (319)
-+...+.|+||||.. .--..+..|+--++++.+. ++-.|.+|.+.|. +
T Consensus 105 vDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~-~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~f~f~ 183 (687)
T 3k6s_B 105 IDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITES-GRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPPFAFR 183 (687)
T ss_dssp CEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCS-CEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCCCSCE
T ss_pred eeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcC-cEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCcccce
Confidence 456789999999985 2223334445555666666 8889999998432 1
Q ss_pred EEec-CCCHHHHHHHhhcCCcccccc-HHHHHHHHHHHH---HhCCCChhhccceEEEEecCccccc
Q 045156 149 HLVE-GDDLKSKTRFVSNVNWDMNTD-FQEVFDLILEVA---VNGNLKPEQMIKRLFVFSDMEFDEA 210 (319)
Q Consensus 149 ~~l~-g~~l~ekv~~i~~~~~g~nTn-l~~vf~~IL~~A---~k~~l~~e~mpk~v~V~SDmqFd~a 210 (319)
|.++ ..++.+-.+.+.+...++|-| -+..|+.|++.| .+-++++ --+-|+++||--|..|
T Consensus 184 ~~l~lt~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~--a~rllV~~TDa~~H~a 248 (687)
T 3k6s_B 184 HVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRN--VTRLLVFATDDGFHFA 248 (687)
T ss_dssp EEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS--SCCEEEEECSSCCCCT
T ss_pred eecccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCcc--ceEEEEEECCCccccC
Confidence 2222 234444555566666666654 456799999998 4778886 3456667899988754
No 36
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=90.34 E-value=0.32 Score=49.21 Aligned_cols=164 Identities=19% Similarity=0.194 Sum_probs=98.2
Q ss_pred CcceEEEEeCCCCCCCC---hHHHHHHHHHHHhhhccCCcccEEEEeCCCce---------------------------E
Q 045156 99 LRNCKAICDVSGSVHGT---PLEVSVALGLLVSELSEEPWKGKLITFGEKPE---------------------------L 148 (319)
Q Consensus 99 ~~~~I~v~DvSGSM~g~---p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~---------------------------~ 148 (319)
--+...+.|+||||... --..+..|+--++++.+. |+-.|.+|-+.|. +
T Consensus 132 PVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~-~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~c~p~f~f 210 (503)
T 3v4v_B 132 PVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHS-VRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLERCQSPFSF 210 (503)
T ss_dssp CEEEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSC-EEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSCCCCCCSE
T ss_pred ceeEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcC-cEEeeeeecccccCCcccCCHHHhcCCCcCCCCCCCCCcce
Confidence 34457789999999863 223344455555666655 8888999977531 1
Q ss_pred -EEec-CCCHHHHHHHhhcCCcccccc-HHHHHHHHHHHHH---hCCCChhhccceEEEEecCccccccC----------
Q 045156 149 -HLVE-GDDLKSKTRFVSNVNWDMNTD-FQEVFDLILEVAV---NGNLKPEQMIKRLFVFSDMEFDEASL---------- 212 (319)
Q Consensus 149 -~~l~-g~~l~ekv~~i~~~~~g~nTn-l~~vf~~IL~~A~---k~~l~~e~mpk~v~V~SDmqFd~a~~---------- 212 (319)
|.++ ..+..+-.+.+.+...++|-| -+.+|+.|++.|+ +-++++ . -+-|+++||--|..|..
T Consensus 211 r~~l~LT~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~IgWR~-a-~rllV~~TDA~fH~agDgkLaGIv~pN 288 (503)
T 3v4v_B 211 HHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRN-V-SRLLVFTSDDTFHTAGDGKLGGIFMPS 288 (503)
T ss_dssp EEEEEEESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-S-EEEEEEEESSCBCCTTGGGTTTCCSCC
T ss_pred EEEEEecCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhcccccCCCc-c-eEEEEEECCCCcCcCCCccccceecCC
Confidence 1222 134444555566777766654 4678999999995 778886 2 35566689999887522
Q ss_pred ------C-C--C-------cchHHHHHHHHHhcCCCCCCCeEEEEeCCCC---------CCCCcccCCCCeEEEeccCHH
Q 045156 213 ------H-P--W-------ETDYQAIVRKYTEKGYGSAVPEIIFWNLRHS---------KSTPVPEGQEGVALVSGFSKI 267 (319)
Q Consensus 213 ------~-~--w-------~t~~e~i~~ky~~~Gy~~~~P~ivfWNl~~~---------~~~Pv~~~~~gv~LVSG~S~~ 267 (319)
+ . + -.+...+.++..++... +| |=|-.. ..+| ..-|..++.=|.+
T Consensus 289 Dg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~ennI~-----~I-FAVt~~~~~~Y~~L~~~ip----~s~vg~Ls~dSsN 358 (503)
T 3v4v_B 289 DGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQ-----PI-FAVTSAALPVYQELSKLIP----KSAVGELSEDSSN 358 (503)
T ss_dssp CSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHTEE-----EE-EEECSSSHHHHHHHHTTST----TCEEEECCTTSCT
T ss_pred CCCeEECCCCccccccccCCCCHHHHHHHHHhcCCe-----EE-EEEcccchhHHHHHHHhCC----CceeeEccccchh
Confidence 0 0 0 01233455666664332 23 333221 1333 2347778888899
Q ss_pred HHHHHHhC
Q 045156 268 LIKLFLEN 275 (319)
Q Consensus 268 i~k~~l~~ 275 (319)
|++++.+.
T Consensus 359 iv~LI~~a 366 (503)
T 3v4v_B 359 VVQLIMDA 366 (503)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988753
No 37
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=71.93 E-value=9.2 Score=40.48 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=37.6
Q ss_pred cceEEEEeCCCCC--CCChHHHHHHHHHHHhhhccC--CcccEEEEeCCCceEEEec
Q 045156 100 RNCKAICDVSGSV--HGTPLEVSVALGLLVSELSEE--PWKGKLITFGEKPELHLVE 152 (319)
Q Consensus 100 ~~~I~v~DvSGSM--~g~p~dvaiaL~lllae~~~~--~~~~~~ItFs~~p~~~~l~ 152 (319)
-.++.|+|||.+. .|.--.++-+|-..+..++.+ .-+-.||||++.-.++.+.
T Consensus 188 p~yvFvIDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~ 244 (810)
T 1pcx_A 188 ATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIP 244 (810)
T ss_dssp CEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECC
T ss_pred cEEEEEEECChHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecC
Confidence 4579999999887 343344555555566666653 3567899999999988774
No 38
>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease), protease, D-aminopeptidase, decamer, SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP: c.99.1.1
Probab=65.74 E-value=13 Score=34.62 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=53.5
Q ss_pred eEEEEecCccccc-----cCCCCcchHHHHHHHH-----------HhcCCCCCCCeEEEEeCCCC-CCCCcccCCCCeEE
Q 045156 198 RLFVFSDMEFDEA-----SLHPWETDYQAIVRKY-----------TEKGYGSAVPEIIFWNLRHS-KSTPVPEGQEGVAL 260 (319)
Q Consensus 198 ~v~V~SDmqFd~a-----~~~~w~t~~e~i~~ky-----------~~~Gy~~~~P~ivfWNl~~~-~~~Pv~~~~~gv~L 260 (319)
||||-.|||==.. ...+...+|++.++.+ -++|.+ +|+-+|=-|+ ++.+...-.+.+.|
T Consensus 2 Ki~IS~DmEGiaGV~~~~~~~~g~~~Y~r~r~~mT~evnAai~ga~~~Ga~----eV~V~DsHg~~~NLl~e~L~~ra~l 77 (274)
T 1hi9_A 2 KLYMSVDMEGISGLPDDTFVDSGKRNYERGRLIMTEEANYCIAEAFNSGCT----EVLVNDSHSKMNNLMVEKLHPEADL 77 (274)
T ss_dssp EEEEEECSTTSTTCCSGGGTCTTSTTHHHHHHHHHHHHHHHHHHHHHTTCS----EEEEEECSTTSCCSCTTTSCTTSEE
T ss_pred eEEEEECCCCCCCCCCHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHCCCe----EEEEEccCCCcCCcChhHCCcCeEE
Confidence 7999999983221 1233446688766544 355776 8999998887 88888888899999
Q ss_pred EeccCHHHHHHHHhC
Q 045156 261 VSGFSKILIKLFLEN 275 (319)
Q Consensus 261 VSG~S~~i~k~~l~~ 275 (319)
|+| +|+-+.|+-.-
T Consensus 78 i~G-~prp~~Mm~Gl 91 (274)
T 1hi9_A 78 ISG-DVKPFSMVEGL 91 (274)
T ss_dssp EEE-SCCTTGGGTTC
T ss_pred EeC-CCCCcchhccc
Confidence 999 78777776543
No 39
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=50.35 E-value=15 Score=35.35 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHHHh---CCCChhhccceEEEEec----CccccccCCCCcchHHHHHHHHHhc--CCCCCCCeEEEEeC
Q 045156 173 DFQEVFDLILEVAVN---GNLKPEQMIKRLFVFSD----MEFDEASLHPWETDYQAIVRKYTEK--GYGSAVPEIIFWNL 243 (319)
Q Consensus 173 nl~~vf~~IL~~A~k---~~l~~e~mpk~v~V~SD----mqFd~a~~~~w~t~~e~i~~ky~~~--Gy~~~~P~ivfWNl 243 (319)
+|...+...|..-.+ ++ ..+|++|+|+=| +||.+.- ..+...|++.+++. +|. .|+|.|==+
T Consensus 213 ~l~~~~~~~L~~~~~~~~~~---~~~P~rIiiyRDGVseGQf~~V~----~~El~~i~~a~~~~~~~~~--~P~it~Ivv 283 (388)
T 2yha_A 213 QFTDKFKTRLELWRSNPANN---RSLPENILIFRDGVSEGQFQMVI----KDELPLVRAACKLVYPAGK--LPRITLIVS 283 (388)
T ss_dssp HHHHHHHHHHHHHHHSGGGT---TCCCSEEEEEEESCCGGGHHHHH----HHTHHHHHHHHHHHSCTTC--CCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhhhc---CCCCceEEEEecCcChhHHHHHH----HHHHHHHHHHHHHhhcccC--CCcEEEEEe
Confidence 567777777776665 33 357999999855 6776542 25677788888764 553 599999877
Q ss_pred CCC
Q 045156 244 RHS 246 (319)
Q Consensus 244 ~~~ 246 (319)
.-+
T Consensus 284 ~Kr 286 (388)
T 2yha_A 284 VKG 286 (388)
T ss_dssp C--
T ss_pred ccc
Confidence 655
No 40
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=46.65 E-value=60 Score=34.96 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=37.1
Q ss_pred cceEEEEeCCCCC--CCChHHHHHHHHHHHhhhccC--CcccEEEEeCCCceEEEec
Q 045156 100 RNCKAICDVSGSV--HGTPLEVSVALGLLVSELSEE--PWKGKLITFGEKPELHLVE 152 (319)
Q Consensus 100 ~~~I~v~DvSGSM--~g~p~dvaiaL~lllae~~~~--~~~~~~ItFs~~p~~~~l~ 152 (319)
-.++.|+|||.+. .|.--.++-+|-..|..+..+ .-+-.||||++.-.++.+.
T Consensus 304 pvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~ 360 (926)
T 1m2v_B 304 ATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIP 360 (926)
T ss_dssp CBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECC
T ss_pred cEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecC
Confidence 4579999999876 444444555555556666653 2567899999998888774
No 41
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=44.69 E-value=22 Score=34.87 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHHHh---CCCChhhccceEEEEec----CccccccCCCCcchHHHHHHHHHhc--CCCCCCCeEEEEeC
Q 045156 173 DFQEVFDLILEVAVN---GNLKPEQMIKRLFVFSD----MEFDEASLHPWETDYQAIVRKYTEK--GYGSAVPEIIFWNL 243 (319)
Q Consensus 173 nl~~vf~~IL~~A~k---~~l~~e~mpk~v~V~SD----mqFd~a~~~~w~t~~e~i~~ky~~~--Gy~~~~P~ivfWNl 243 (319)
+|...+...|..-.+ ++ ..+|++|+|+=| +||.+.- ..+...|++.+++. +|. .|+|.|==+
T Consensus 213 ~l~~~~~~~L~~~~~~~~~~---~~~P~rIiiyRDGVseGqf~~V~----~~El~~i~~a~~~~~~~~~--~p~it~Ivv 283 (437)
T 2yhb_A 213 QFTDKFKTRLELWRSNPANN---RSLPENILIFRDGVSEGQFQMVI----KDELPLVRAACKLVYPAGK--LPRITLIVS 283 (437)
T ss_dssp HHHHHHHHHHHHHHTCGGGT---TCCCSEEEEEEESCCTTTHHHHH----HHTHHHHHHHHHHHSCTTC--CCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhhc---CCCCceEEEEeCCcchHHHHHHH----HHHHHHHHHHHHHhhcccC--CCCEEEEEE
Confidence 567777777777665 32 357999999855 5665532 24667788888764 553 599999877
Q ss_pred CCC
Q 045156 244 RHS 246 (319)
Q Consensus 244 ~~~ 246 (319)
.-+
T Consensus 284 ~Kr 286 (437)
T 2yhb_A 284 VKR 286 (437)
T ss_dssp C--
T ss_pred Eec
Confidence 643
No 42
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=37.52 E-value=1.6e+02 Score=23.55 Aligned_cols=75 Identities=17% Similarity=0.325 Sum_probs=47.4
Q ss_pred HHHhhcCCCcceEEEEeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEecCCCHHHHHHHhhcCCccc
Q 045156 91 DDLSKEGKLRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNWDM 170 (319)
Q Consensus 91 ~~l~~~g~~~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~g~~l~ekv~~i~~~~~g~ 170 (319)
+.+++......+|+++|.-| |+|..+|..+. .+ ++.+..+.|-++.=-++.+.... .
T Consensus 50 ~~i~~~~~~~gvliLtDl~G---GSp~n~a~~~~---~~---------------~~~v~vi~GvNlpmlle~~~~~~--~ 106 (135)
T 1pdo_A 50 AQLAKLDTTKGVLFLVDTWG---GSPFNAASRIV---VD---------------KEHYEVIAGVNIPMLVETLMARD--D 106 (135)
T ss_dssp HHHTTSCCTTCEEEEESSTT---SHHHHHHHHHH---TT---------------CTTEEEEESCCHHHHHHHHHHHT--T
T ss_pred HHHHhcCCCCCEEEEEECCC---CCHHHHHHHHH---hc---------------cCCEEEEeCCCHHHHHHHHHhcc--c
Confidence 44444455567999999844 56888864432 11 22455677877655555443222 2
Q ss_pred cccHHHHHHHHHHHHHhC
Q 045156 171 NTDFQEVFDLILEVAVNG 188 (319)
Q Consensus 171 nTnl~~vf~~IL~~A~k~ 188 (319)
+.++....+.+++.++++
T Consensus 107 ~~~l~el~~~~~~~g~~~ 124 (135)
T 1pdo_A 107 DPSFDELVALAVETGREG 124 (135)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhhHH
Confidence 568888888899888876
No 43
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=32.25 E-value=82 Score=22.44 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=21.1
Q ss_pred CCCCCCcccCCCCeEEEeccCHHHHHHHHh
Q 045156 245 HSKSTPVPEGQEGVALVSGFSKILIKLFLE 274 (319)
Q Consensus 245 ~~~~~Pv~~~~~gv~LVSG~S~~i~k~~l~ 274 (319)
+..++|+... +| ..+.||++.-++-+|+
T Consensus 64 g~~~vP~l~~-~g-~~i~G~~~~~l~~~l~ 91 (92)
T 3ic4_A 64 GSYSVPVVVK-GD-KHVLGYNEEKLKELIR 91 (92)
T ss_dssp SSSCSCEEEE-TT-EEEESCCHHHHHHHHH
T ss_pred CCCCcCEEEE-CC-EEEeCCCHHHHHHHhc
Confidence 3467888765 45 4688999999998885
No 44
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=30.89 E-value=2.1e+02 Score=23.03 Aligned_cols=70 Identities=20% Similarity=0.331 Sum_probs=45.8
Q ss_pred HhhcCCCcceEEEEeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEecCCCHHHHHHHhhcCCccccc
Q 045156 93 LSKEGKLRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNWDMNT 172 (319)
Q Consensus 93 l~~~g~~~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~g~~l~ekv~~i~~~~~g~nT 172 (319)
+++... ..+|+++|.-| |+|..+|..+. .. ++.+..+.|-+|.=-++.+.. .+.
T Consensus 56 i~~~~~-~gvliLtDl~G---GSp~n~a~~~~-------~~-----------~~~v~vi~GvNlpmlle~~~~----~~~ 109 (142)
T 3bed_A 56 LKEAGN-VPTLVLADLXG---GTPCNVAMMAM-------GT-----------YPQLRVVAGLNLAMAIEAAVS----PVE 109 (142)
T ss_dssp HHHHCS-CCEEEEESSTT---SHHHHHHHHHT-------TT-----------CTTEEEEESCCHHHHHHHHHC----CCC
T ss_pred HHhcCC-CCEEEEEECCC---CHHHHHHHHHh-------cc-----------CCCEEEEeCCCHHHHHHHHHc----cCC
Confidence 333345 67999999844 56888864431 11 124566788777655555544 367
Q ss_pred cHHHHHHHHHHHHHhC
Q 045156 173 DFQEVFDLILEVAVNG 188 (319)
Q Consensus 173 nl~~vf~~IL~~A~k~ 188 (319)
++....+.+++.++++
T Consensus 110 ~l~el~~~~~~~~~~~ 125 (142)
T 3bed_A 110 NVDELAAYLTQIGQSA 125 (142)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhHH
Confidence 8888888888887766
No 45
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=27.72 E-value=48 Score=34.75 Aligned_cols=52 Identities=17% Similarity=0.090 Sum_probs=35.8
Q ss_pred cceEEEEeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEecC
Q 045156 100 RNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEG 153 (319)
Q Consensus 100 ~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~g 153 (319)
-.++.|+|||.+... --.++-+|-..+..++.+ -+-.||||++.-+++++..
T Consensus 133 p~~vFvIDvS~~a~~-l~~l~~si~~~L~~Lp~~-~~VGlITf~~~v~~y~l~~ 184 (769)
T 2nut_A 133 LIFLYVVDTCMEDED-LQALKESMQMSLSLLPPT-ALVGLITFGRMVQVHELGC 184 (769)
T ss_dssp CEEEEEEECCSCHHH-HHHHHHHHHHHHTTSCTT-CEEEEEEESSEEEEEESSC
T ss_pred CEEEEEEECCccHHH-HHHHHHHHHHHHHhCCCC-ceEEEEEeCCEEEEEeCCC
Confidence 457889999998432 122344444455666655 5778999999999998864
No 46
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=26.09 E-value=76 Score=28.85 Aligned_cols=73 Identities=10% Similarity=0.123 Sum_probs=42.6
Q ss_pred CccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCc---------cccccCCCCc---chHHHHHHHHHhcCCCCC
Q 045156 167 NWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDME---------FDEASLHPWE---TDYQAIVRKYTEKGYGSA 234 (319)
Q Consensus 167 ~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmq---------Fd~a~~~~w~---t~~e~i~~ky~~~Gy~~~ 234 (319)
...++||+++|-+.+.+.+.++..--.+ |.-.+.+++.. ++..+.+.|. .-++.+++.|+++|.+-.
T Consensus 191 ~v~y~~d~~~v~~~l~~~~~~~~~vl~~-p~p~v~v~~~~~~~i~~~v~~~~~~~~~~~~~~~l~~~i~~~~~~~gI~ip 269 (286)
T 2vv5_A 191 GVAYDSDIDQVKQILTNIIQSEDRILKD-REMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFP 269 (286)
T ss_dssp EECTTSCHHHHHHHHHHHHHHCTTBCTT-SCEEEEEEEECSSSEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred EEcCCCCHHHHHHHHHHHHHhCcccccC-CCCEEEEEEecCCeEEEEEEEEEccchHHHHHHHHHHHHHHHHHHCCCcCC
Confidence 5678899999999888888876421122 32233333321 1111222232 345668899999998844
Q ss_pred CCeEEE
Q 045156 235 VPEIIF 240 (319)
Q Consensus 235 ~P~ivf 240 (319)
.|+.--
T Consensus 270 ~P~~~v 275 (286)
T 2vv5_A 270 YPQMDV 275 (286)
T ss_dssp CCEEEE
T ss_pred CCceEE
Confidence 566433
No 47
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=22.71 E-value=55 Score=34.82 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHHH-HHhCCCChhhccceEEEEec----CccccccCCCCcchHHHHHHHHHhc--CCCCCCCeEEEEeCC
Q 045156 172 TDFQEVFDLILEV-AVNGNLKPEQMIKRLFVFSD----MEFDEASLHPWETDYQAIVRKYTEK--GYGSAVPEIIFWNLR 244 (319)
Q Consensus 172 Tnl~~vf~~IL~~-A~k~~l~~e~mpk~v~V~SD----mqFd~a~~~~w~t~~e~i~~ky~~~--Gy~~~~P~ivfWNl~ 244 (319)
.+|...+...|.. -.+++ .+|++|||+=| +||.+.- ..+...|++.+++. +|. |++.|==+.
T Consensus 642 ~~l~~~~~~~L~~~~~~~~----~~P~~IiiyRDGVsegq~~~v~----~~Ev~~i~~a~~~~~~~~~---P~it~Ivv~ 710 (861)
T 4f3t_A 642 QDLAAMVRELLIQFYKSTR----FKPTRIIFYRDGVSEGQFQQVL----HHELLAIREACIKLEKDYQ---PGITFIVVQ 710 (861)
T ss_dssp TTHHHHHHHHHHHHHHHHS----CCCSEEEEEEESCCGGGHHHHH----HHHHHHHHHHHHHHCTTCC---CEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhC----CCCceEEEEecCCChHHHHHHH----HHHHHHHHHHHHHhccCCC---CcEEEEEEE
Confidence 4677777766654 33333 47999999855 5665532 14556677777653 676 999887664
No 48
>3r3p_A MobIle intron protein; homing endonuclease, hydrolase; 2.20A {Bacillus phage 0305phi8-36}
Probab=22.57 E-value=90 Score=24.42 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=27.5
Q ss_pred ceEEEEecCccccccCCCCcchHHHHH-HHHHhcCCCCCCCeEEEEeC
Q 045156 197 KRLFVFSDMEFDEASLHPWETDYQAIV-RKYTEKGYGSAVPEIIFWNL 243 (319)
Q Consensus 197 k~v~V~SDmqFd~a~~~~w~t~~e~i~-~ky~~~Gy~~~~P~ivfWNl 243 (319)
.++.|+-|+.||-....+ ..++..+ ...+++||. -|.|||-
T Consensus 40 ~rl~IevDG~~wH~~~~~--~~rD~~r~~~L~~~Gw~----Vlr~~~~ 81 (105)
T 3r3p_A 40 KKLAIEVNGVYWASKQKN--VNKDKRKLSELHSKGYR----VLTIEDD 81 (105)
T ss_dssp TTEEEEEECSCCTTCCCC--HHHHHHHHHHHHHTTCE----EEEEEGG
T ss_pred CCEEEEecCcccCCCchH--HHHHHHHHHHHHHCCCE----EEEEeHH
Confidence 479999999997654322 2334333 345788998 6889985
Done!