Query 045158
Match_columns 252
No_of_seqs 281 out of 2077
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 10:24:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.8 7.6E-19 1.6E-23 128.9 11.8 94 57-164 9-103 (103)
2 cd01807 GDX_N ubiquitin-like d 99.8 7.6E-19 1.6E-23 121.8 8.5 72 1-73 1-73 (74)
3 cd01793 Fubi Fubi ubiquitin-li 99.8 2.1E-18 4.6E-23 119.5 8.7 74 85-164 1-74 (74)
4 cd01802 AN1_N ubiquitin-like d 99.8 5.5E-18 1.2E-22 124.4 10.4 91 141-244 8-98 (103)
5 cd01807 GDX_N ubiquitin-like d 99.8 3.5E-18 7.6E-23 118.4 8.5 72 85-157 1-73 (74)
6 cd01793 Fubi Fubi ubiquitin-li 99.7 6.8E-18 1.5E-22 116.9 8.0 70 1-72 1-70 (74)
7 PTZ00044 ubiquitin; Provisiona 99.7 1.3E-17 2.7E-22 116.2 8.8 71 85-156 1-72 (76)
8 cd01797 NIRF_N amino-terminal 99.7 9.6E-18 2.1E-22 117.1 8.0 73 1-74 1-76 (78)
9 cd01797 NIRF_N amino-terminal 99.7 3.5E-17 7.7E-22 114.2 8.4 72 85-157 1-75 (78)
10 cd01810 ISG15_repeat2 ISG15 ub 99.7 3.6E-17 7.8E-22 113.3 8.2 68 87-155 1-69 (74)
11 KOG0004 Ubiquitin/40S ribosoma 99.7 3.7E-18 8.1E-23 130.2 3.5 115 85-204 1-122 (156)
12 PTZ00044 ubiquitin; Provisiona 99.7 5.8E-17 1.3E-21 112.8 8.5 71 1-72 1-72 (76)
13 cd01803 Ubiquitin Ubiquitin. U 99.7 6.8E-17 1.5E-21 112.4 8.8 75 85-164 1-76 (76)
14 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 4E-17 8.6E-22 112.4 7.4 69 1-70 2-71 (73)
15 cd01794 DC_UbP_C dendritic cel 99.7 4.3E-17 9.3E-22 111.4 7.0 67 4-71 2-69 (70)
16 cd01806 Nedd8 Nebb8-like ubiq 99.7 1.2E-16 2.5E-21 111.2 9.0 70 85-155 1-71 (76)
17 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 9E-17 1.9E-21 110.6 8.2 71 84-155 1-72 (73)
18 cd01805 RAD23_N Ubiquitin-like 99.7 1.1E-16 2.4E-21 111.7 8.8 73 1-74 1-76 (77)
19 cd01794 DC_UbP_C dendritic cel 99.7 1.4E-16 2.9E-21 108.9 7.6 67 88-155 2-69 (70)
20 cd01810 ISG15_repeat2 ISG15 ub 99.7 1.7E-16 3.6E-21 110.0 7.9 67 179-245 4-70 (74)
21 cd01804 midnolin_N Ubiquitin-l 99.7 3E-16 6.4E-21 109.7 8.7 70 84-155 1-71 (78)
22 cd01798 parkin_N amino-termina 99.7 2.9E-16 6.2E-21 107.6 7.8 68 87-155 1-69 (70)
23 cd01805 RAD23_N Ubiquitin-like 99.7 5.7E-16 1.2E-20 108.1 8.9 71 85-156 1-74 (77)
24 KOG0003 Ubiquitin/60s ribosoma 99.7 9.9E-18 2.1E-22 119.2 -0.2 74 86-164 2-76 (128)
25 cd01804 midnolin_N Ubiquitin-l 99.7 3.9E-16 8.5E-21 109.1 7.8 70 1-72 2-72 (78)
26 cd01798 parkin_N amino-termina 99.7 3.6E-16 7.7E-21 107.1 7.3 68 3-71 1-69 (70)
27 cd01803 Ubiquitin Ubiquitin. U 99.6 7.1E-16 1.5E-20 107.2 8.2 71 1-72 1-72 (76)
28 cd01806 Nedd8 Nebb8-like ubiq 99.6 9.6E-16 2.1E-20 106.6 8.7 71 1-72 1-72 (76)
29 KOG0003 Ubiquitin/60s ribosoma 99.6 2.8E-17 6.2E-22 116.9 0.8 69 1-70 1-70 (128)
30 cd01809 Scythe_N Ubiquitin-lik 99.6 1.3E-15 2.8E-20 104.8 8.5 70 85-155 1-71 (72)
31 cd01792 ISG15_repeat1 ISG15 ub 99.6 5.7E-16 1.2E-20 108.9 6.8 72 1-73 3-77 (80)
32 cd01809 Scythe_N Ubiquitin-lik 99.6 1.4E-15 2.9E-20 104.7 8.5 70 1-71 1-71 (72)
33 cd01813 UBP_N UBP ubiquitin pr 99.6 1.1E-15 2.4E-20 105.6 7.9 69 1-70 1-72 (74)
34 cd01800 SF3a120_C Ubiquitin-li 99.6 1.1E-15 2.4E-20 106.3 8.0 70 90-164 4-73 (76)
35 cd01792 ISG15_repeat1 ISG15 ub 99.6 1.2E-15 2.6E-20 107.2 7.8 71 85-156 3-76 (80)
36 KOG0005 Ubiquitin-like protein 99.6 3.4E-16 7.5E-21 99.4 4.4 68 1-69 1-69 (70)
37 cd01796 DDI1_N DNA damage indu 99.6 1.7E-15 3.7E-20 104.0 7.3 68 87-154 1-70 (71)
38 PF00240 ubiquitin: Ubiquitin 99.6 1.8E-15 3.8E-20 103.3 7.3 65 180-244 2-66 (69)
39 KOG0004 Ubiquitin/40S ribosoma 99.6 5.1E-16 1.1E-20 118.6 4.8 71 170-244 1-71 (156)
40 PF00240 ubiquitin: Ubiquitin 99.6 3.4E-15 7.4E-20 101.9 8.2 66 7-73 3-68 (69)
41 cd01813 UBP_N UBP ubiquitin pr 99.6 3.2E-15 7E-20 103.3 8.0 69 85-154 1-72 (74)
42 cd01808 hPLIC_N Ubiquitin-like 99.6 3.4E-15 7.5E-20 102.5 7.9 69 1-71 1-70 (71)
43 cd01812 BAG1_N Ubiquitin-like 99.6 4.1E-15 8.9E-20 102.0 7.9 70 85-155 1-70 (71)
44 cd01808 hPLIC_N Ubiquitin-like 99.6 5.4E-15 1.2E-19 101.5 8.2 69 85-155 1-70 (71)
45 cd01812 BAG1_N Ubiquitin-like 99.6 6E-15 1.3E-19 101.2 7.7 69 1-70 1-69 (71)
46 cd01800 SF3a120_C Ubiquitin-li 99.6 3.6E-15 7.7E-20 103.8 6.6 69 181-250 5-73 (76)
47 cd01796 DDI1_N DNA damage indu 99.6 4.4E-15 9.5E-20 101.9 6.9 64 179-242 4-69 (71)
48 KOG0005 Ubiquitin-like protein 99.6 1.6E-15 3.5E-20 96.4 4.1 69 85-154 1-70 (70)
49 cd01790 Herp_N Homocysteine-re 99.5 1.3E-14 2.7E-19 100.6 6.5 70 1-71 2-78 (79)
50 cd01763 Sumo Small ubiquitin-r 99.5 1.3E-13 2.9E-18 98.3 10.0 78 82-164 9-87 (87)
51 cd01799 Hoil1_N Ubiquitin-like 99.5 8.5E-14 1.8E-18 96.3 7.9 63 92-155 11-74 (75)
52 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 4E-14 8.6E-19 96.7 4.9 54 192-245 19-75 (75)
53 smart00213 UBQ Ubiquitin homol 99.5 1.5E-13 3.2E-18 92.0 7.3 63 1-63 1-63 (64)
54 cd01790 Herp_N Homocysteine-re 99.5 1.8E-13 3.9E-18 94.9 7.7 70 85-155 2-78 (79)
55 cd01799 Hoil1_N Ubiquitin-like 99.5 1.5E-13 3.3E-18 95.0 7.1 62 181-243 10-73 (75)
56 cd01763 Sumo Small ubiquitin-r 99.4 9E-13 1.9E-17 94.0 9.4 72 168-243 10-81 (87)
57 smart00213 UBQ Ubiquitin homol 99.4 4.3E-13 9.3E-18 89.7 7.3 64 85-149 1-64 (64)
58 TIGR00601 rad23 UV excision re 99.4 3.3E-13 7.2E-18 120.2 8.5 72 1-73 1-76 (378)
59 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 1.7E-13 3.6E-18 93.7 4.8 53 18-71 19-74 (75)
60 cd01795 USP48_C USP ubiquitin- 99.4 6.6E-13 1.4E-17 94.0 6.6 62 95-156 16-77 (107)
61 TIGR00601 rad23 UV excision re 99.3 3.7E-12 8E-17 113.5 8.4 72 85-157 1-76 (378)
62 cd01795 USP48_C USP ubiquitin- 99.3 5.6E-12 1.2E-16 89.3 6.5 63 10-73 15-78 (107)
63 cd01814 NTGP5 Ubiquitin-like N 99.3 5.2E-12 1.1E-16 92.1 4.8 71 3-74 7-92 (113)
64 KOG0011 Nucleotide excision re 99.3 1.2E-11 2.7E-16 105.5 7.0 73 1-74 1-76 (340)
65 cd01769 UBL Ubiquitin-like dom 99.2 4.4E-11 9.5E-16 81.0 7.5 66 89-155 2-68 (69)
66 KOG0010 Ubiquitin-like protein 99.2 1.8E-11 3.9E-16 109.7 5.9 73 1-74 16-88 (493)
67 cd01769 UBL Ubiquitin-like dom 99.2 5E-11 1.1E-15 80.7 6.7 63 181-243 5-67 (69)
68 cd01814 NTGP5 Ubiquitin-like N 99.2 4.3E-11 9.4E-16 87.4 5.8 73 85-158 5-92 (113)
69 KOG0010 Ubiquitin-like protein 99.2 8.1E-11 1.8E-15 105.5 7.6 75 83-158 14-88 (493)
70 cd01789 Alp11_N Ubiquitin-like 99.1 4E-10 8.7E-15 79.7 9.1 70 86-155 3-80 (84)
71 PF11976 Rad60-SLD: Ubiquitin- 99.1 8E-10 1.7E-14 75.8 7.6 70 85-155 1-72 (72)
72 PF11976 Rad60-SLD: Ubiquitin- 99.0 7.8E-10 1.7E-14 75.9 7.2 69 1-70 1-71 (72)
73 KOG0011 Nucleotide excision re 99.0 1E-09 2.3E-14 93.8 6.8 72 85-157 1-75 (340)
74 cd01788 ElonginB Ubiquitin-lik 99.0 2.1E-09 4.5E-14 78.2 7.1 61 1-61 1-63 (119)
75 cd01789 Alp11_N Ubiquitin-like 98.9 5.5E-09 1.2E-13 73.9 8.2 68 2-70 3-79 (84)
76 PF14560 Ubiquitin_2: Ubiquiti 98.9 6.7E-09 1.4E-13 74.0 8.6 71 85-155 2-82 (87)
77 KOG0001 Ubiquitin and ubiquiti 98.9 2.2E-08 4.8E-13 67.9 8.9 68 88-156 3-71 (75)
78 KOG0001 Ubiquitin and ubiquiti 98.9 1.5E-08 3.3E-13 68.7 8.1 64 180-243 6-69 (75)
79 PF14560 Ubiquitin_2: Ubiquiti 98.8 2.4E-08 5.2E-13 71.1 6.9 63 183-245 13-83 (87)
80 cd01788 ElonginB Ubiquitin-lik 98.8 3.9E-08 8.4E-13 71.6 7.7 70 86-156 4-80 (119)
81 PLN02560 enoyl-CoA reductase 98.7 5.4E-08 1.2E-12 84.9 7.6 65 1-65 1-77 (308)
82 PF13881 Rad60-SLD_2: Ubiquiti 98.7 2.7E-07 5.7E-12 68.5 9.7 73 3-75 5-91 (111)
83 cd01811 OASL_repeat1 2'-5' oli 98.6 1.8E-07 3.9E-12 62.8 7.3 68 1-70 1-74 (80)
84 PLN02560 enoyl-CoA reductase 98.6 1.4E-07 3.1E-12 82.3 7.7 69 85-154 1-81 (308)
85 cd01811 OASL_repeat1 2'-5' oli 98.5 4.2E-07 9.2E-12 61.0 7.2 70 85-155 1-75 (80)
86 PF13881 Rad60-SLD_2: Ubiquiti 98.5 1E-06 2.2E-11 65.4 9.4 73 85-158 3-90 (111)
87 cd01801 Tsc13_N Ubiquitin-like 98.4 7.4E-07 1.6E-11 61.9 6.2 52 101-153 20-74 (77)
88 KOG4248 Ubiquitin-like protein 98.4 5.5E-07 1.2E-11 87.2 6.4 71 86-158 4-75 (1143)
89 KOG4248 Ubiquitin-like protein 98.4 5.2E-07 1.1E-11 87.4 5.8 65 179-244 8-72 (1143)
90 PF11543 UN_NPL4: Nuclear pore 98.3 1.4E-06 2.9E-11 60.9 6.1 68 1-69 5-77 (80)
91 cd01801 Tsc13_N Ubiquitin-like 98.3 9.6E-07 2.1E-11 61.3 5.1 52 191-242 20-74 (77)
92 PF11543 UN_NPL4: Nuclear pore 98.3 1.3E-06 2.9E-11 61.0 5.6 72 83-154 3-78 (80)
93 cd00196 UBQ Ubiquitin-like pro 98.3 2.8E-06 6E-11 55.0 6.4 63 182-244 6-68 (69)
94 cd00196 UBQ Ubiquitin-like pro 98.2 9.6E-06 2.1E-10 52.3 7.2 63 92-155 6-68 (69)
95 KOG0006 E3 ubiquitin-protein l 98.1 7.4E-06 1.6E-10 70.0 6.1 69 1-70 1-73 (446)
96 KOG1872 Ubiquitin-specific pro 98.1 9.3E-06 2E-10 73.0 6.7 72 85-157 4-76 (473)
97 KOG0006 E3 ubiquitin-protein l 98.0 9.6E-06 2.1E-10 69.3 5.6 72 85-157 1-77 (446)
98 KOG4495 RNA polymerase II tran 98.0 1.1E-05 2.4E-10 56.8 4.7 62 1-62 1-66 (110)
99 KOG1872 Ubiquitin-specific pro 98.0 1.5E-05 3.2E-10 71.7 6.8 71 3-74 6-77 (473)
100 KOG3493 Ubiquitin-like protein 97.9 3.9E-06 8.5E-11 54.7 1.6 62 7-69 9-70 (73)
101 KOG4495 RNA polymerase II tran 97.8 4.3E-05 9.3E-10 53.9 4.8 60 85-145 3-64 (110)
102 KOG3493 Ubiquitin-like protein 97.7 1.8E-05 3.9E-10 51.6 1.2 68 86-154 3-71 (73)
103 PF11470 TUG-UBL1: GLUT4 regul 97.6 0.0002 4.4E-09 47.8 6.0 62 181-242 4-65 (65)
104 PF08817 YukD: WXG100 protein 97.5 0.0004 8.6E-09 48.3 6.7 60 183-242 12-78 (79)
105 PF11470 TUG-UBL1: GLUT4 regul 97.5 0.00059 1.3E-08 45.5 6.5 62 91-153 4-65 (65)
106 KOG1769 Ubiquitin-like protein 97.5 0.0013 2.9E-08 47.0 8.4 71 182-252 29-99 (99)
107 KOG1769 Ubiquitin-like protein 97.2 0.0057 1.2E-07 43.8 9.2 70 85-155 21-91 (99)
108 COG5417 Uncharacterized small 97.1 0.0038 8.2E-08 42.1 7.5 64 179-242 12-80 (81)
109 PF08817 YukD: WXG100 protein 97.0 0.0022 4.7E-08 44.6 5.6 68 85-153 3-78 (79)
110 PF10302 DUF2407: DUF2407 ubiq 97.0 0.0022 4.7E-08 46.4 5.5 56 3-58 3-64 (97)
111 PF13019 Telomere_Sde2: Telome 96.9 0.0072 1.6E-07 47.5 8.2 76 85-164 1-88 (162)
112 PF10302 DUF2407: DUF2407 ubiq 96.8 0.0037 8.1E-08 45.2 5.7 57 87-144 3-65 (97)
113 PF00789 UBX: UBX domain; Int 96.8 0.02 4.2E-07 39.9 9.0 72 83-154 5-81 (82)
114 PF14533 USP7_C2: Ubiquitin-sp 96.7 0.031 6.8E-07 46.4 11.4 109 10-121 34-160 (213)
115 PRK06437 hypothetical protein; 96.6 0.013 2.9E-07 39.3 7.0 59 182-251 9-67 (67)
116 KOG0013 Uncharacterized conser 96.5 0.0023 5E-08 51.9 3.2 58 7-64 154-211 (231)
117 PF00789 UBX: UBX domain; Int 96.3 0.026 5.7E-07 39.2 7.4 63 180-242 13-80 (82)
118 smart00166 UBX Domain present 96.3 0.037 7.9E-07 38.4 7.9 71 84-154 4-79 (80)
119 cd01770 p47_UBX p47-like ubiqu 96.1 0.05 1.1E-06 37.8 7.8 68 84-151 4-75 (79)
120 COG5417 Uncharacterized small 95.9 0.054 1.2E-06 36.6 6.8 65 1-65 5-77 (81)
121 PRK08364 sulfur carrier protei 95.8 0.1 2.2E-06 35.3 7.9 56 185-251 15-70 (70)
122 smart00166 UBX Domain present 95.7 0.099 2.1E-06 36.2 7.8 63 180-242 11-78 (80)
123 PRK06488 sulfur carrier protei 95.6 0.086 1.9E-06 35.0 6.9 61 181-251 5-65 (65)
124 KOG3206 Alpha-tubulin folding 95.6 0.056 1.2E-06 44.0 6.9 61 96-156 15-81 (234)
125 PF14533 USP7_C2: Ubiquitin-sp 95.5 0.19 4.1E-06 41.7 10.1 116 94-212 34-161 (213)
126 cd01767 UBX UBX (ubiquitin reg 95.2 0.21 4.5E-06 34.3 8.2 67 85-153 3-74 (77)
127 KOG1639 Steroid reductase requ 95.2 0.035 7.5E-07 46.5 4.8 65 1-65 1-73 (297)
128 cd01774 Faf1_like2_UBX Faf1 ik 95.0 0.24 5.3E-06 34.8 7.9 62 180-242 11-82 (85)
129 KOG0013 Uncharacterized conser 94.9 0.049 1.1E-06 44.4 4.7 61 92-153 155-215 (231)
130 cd06406 PB1_P67 A PB1 domain i 94.9 0.14 3E-06 35.5 6.2 44 4-48 6-49 (80)
131 cd01772 SAKS1_UBX SAKS1-like U 94.8 0.29 6.2E-06 33.9 7.8 68 85-153 5-77 (79)
132 cd01772 SAKS1_UBX SAKS1-like U 94.7 0.34 7.4E-06 33.5 8.2 62 180-242 11-77 (79)
133 cd01770 p47_UBX p47-like ubiqu 94.6 0.27 5.9E-06 34.1 7.4 63 2-65 6-73 (79)
134 PRK07440 hypothetical protein; 94.5 0.28 6E-06 33.2 7.0 61 182-251 10-70 (70)
135 PF12436 USP7_ICP0_bdg: ICP0-b 94.5 1.1 2.5E-05 38.0 12.4 136 81-218 65-224 (249)
136 PRK06083 sulfur carrier protei 94.5 0.32 6.9E-06 34.1 7.5 61 182-251 24-84 (84)
137 PRK05659 sulfur carrier protei 94.4 0.3 6.5E-06 32.3 7.1 62 181-251 5-66 (66)
138 PF11620 GABP-alpha: GA-bindin 94.4 0.17 3.7E-06 35.2 5.8 59 96-155 5-63 (88)
139 cd06407 PB1_NLP A PB1 domain i 94.4 0.26 5.6E-06 34.4 6.9 47 1-47 1-48 (82)
140 cd00565 ThiS ThiaminS ubiquiti 94.4 0.25 5.3E-06 32.7 6.5 61 182-251 5-65 (65)
141 PRK07696 sulfur carrier protei 94.2 0.35 7.6E-06 32.3 6.9 62 181-251 5-67 (67)
142 PF15044 CLU_N: Mitochondrial 94.1 0.1 2.2E-06 35.9 4.3 56 190-245 1-58 (76)
143 PRK08053 sulfur carrier protei 94.1 0.46 1E-05 31.6 7.4 62 181-251 5-66 (66)
144 cd01767 UBX UBX (ubiquitin reg 94.1 0.51 1.1E-05 32.3 7.9 61 180-242 9-74 (77)
145 PF13019 Telomere_Sde2: Telome 94.1 0.36 7.8E-06 38.1 7.8 65 180-244 7-83 (162)
146 TIGR01683 thiS thiamine biosyn 94.1 0.3 6.4E-06 32.2 6.4 62 181-251 3-64 (64)
147 PF11620 GABP-alpha: GA-bindin 94.0 0.12 2.7E-06 35.9 4.4 57 186-242 5-61 (88)
148 PRK05863 sulfur carrier protei 93.9 0.31 6.7E-06 32.3 6.3 61 181-251 5-65 (65)
149 cd01773 Faf1_like1_UBX Faf1 ik 93.8 0.83 1.8E-05 31.9 8.5 71 84-155 5-80 (82)
150 COG5227 SMT3 Ubiquitin-like pr 93.8 0.13 2.9E-06 36.1 4.4 68 182-249 33-100 (103)
151 PF14836 Ubiquitin_3: Ubiquiti 93.8 0.71 1.5E-05 32.6 8.1 61 94-155 14-79 (88)
152 cd01773 Faf1_like1_UBX Faf1 ik 93.7 0.71 1.5E-05 32.2 7.9 62 180-242 12-78 (82)
153 cd01771 Faf1_UBX Faf1 UBX doma 93.6 0.85 1.8E-05 31.7 8.3 71 84-155 4-79 (80)
154 cd01774 Faf1_like2_UBX Faf1 ik 93.6 0.96 2.1E-05 31.8 8.6 70 84-154 4-83 (85)
155 KOG1639 Steroid reductase requ 93.6 0.13 2.9E-06 43.1 4.8 56 188-243 17-77 (297)
156 cd00754 MoaD Ubiquitin domain 93.6 0.42 9.1E-06 32.7 6.8 55 185-244 17-75 (80)
157 cd06406 PB1_P67 A PB1 domain i 93.5 0.36 7.7E-06 33.5 6.0 44 87-131 5-48 (80)
158 cd01771 Faf1_UBX Faf1 UBX doma 93.5 0.78 1.7E-05 31.8 7.9 62 180-242 11-77 (80)
159 PF15044 CLU_N: Mitochondrial 93.2 0.2 4.3E-06 34.5 4.6 57 100-157 1-59 (76)
160 PF12436 USP7_ICP0_bdg: ICP0-b 92.9 0.9 1.9E-05 38.7 9.0 114 14-128 89-224 (249)
161 COG2104 ThiS Sulfur transfer p 92.2 0.97 2.1E-05 30.4 6.7 61 182-251 8-68 (68)
162 cd06407 PB1_NLP A PB1 domain i 91.6 1.5 3.2E-05 30.6 7.3 44 87-130 3-47 (82)
163 smart00666 PB1 PB1 domain. Pho 91.5 1.2 2.7E-05 30.5 7.0 45 2-46 3-47 (81)
164 PF02597 ThiS: ThiS family; I 91.3 1.1 2.4E-05 30.2 6.5 60 182-244 11-72 (77)
165 cd06408 PB1_NoxR The PB1 domai 91.3 1.4 3.1E-05 31.0 6.9 54 1-57 3-56 (86)
166 KOG3206 Alpha-tubulin folding 91.1 0.63 1.4E-05 38.0 5.6 60 187-246 16-82 (234)
167 KOG4598 Putative ubiquitin-spe 90.8 0.6 1.3E-05 44.9 6.1 210 11-233 878-1129(1203)
168 PLN02799 Molybdopterin synthas 90.5 1.3 2.8E-05 30.6 6.3 60 184-249 19-81 (82)
169 PF09379 FERM_N: FERM N-termin 90.1 1.5 3.2E-05 29.9 6.3 56 180-235 3-65 (80)
170 smart00666 PB1 PB1 domain. Pho 90.1 1.6 3.6E-05 29.8 6.5 45 86-130 3-47 (81)
171 COG5227 SMT3 Ubiquitin-like pr 90.1 1.6 3.5E-05 30.8 6.2 64 91-155 32-95 (103)
172 PF10790 DUF2604: Protein of U 90.1 1.7 3.8E-05 28.6 5.9 63 182-244 4-70 (76)
173 KOG4583 Membrane-associated ER 90.0 0.14 3E-06 44.8 1.1 54 8-61 20-75 (391)
174 PRK06488 sulfur carrier protei 90.0 2.5 5.4E-05 27.8 7.1 57 90-155 4-60 (65)
175 cd06409 PB1_MUG70 The MUG70 pr 88.5 1.9 4.2E-05 30.4 5.8 37 8-44 9-48 (86)
176 PF10790 DUF2604: Protein of U 88.4 2.5 5.4E-05 27.8 5.8 64 92-156 4-71 (76)
177 PRK06437 hypothetical protein; 88.2 5.8 0.00013 26.4 8.0 54 92-155 9-62 (67)
178 PRK08364 sulfur carrier protei 88.0 6.1 0.00013 26.4 8.5 61 85-155 5-65 (70)
179 PF10209 DUF2340: Uncharacteri 87.7 1.5 3.2E-05 32.9 5.1 55 190-244 22-107 (122)
180 PRK11840 bifunctional sulfur c 87.4 2.5 5.4E-05 37.3 7.1 62 181-251 5-66 (326)
181 PF00564 PB1: PB1 domain; Int 87.2 3.6 7.8E-05 28.2 6.7 45 2-46 3-48 (84)
182 PF09379 FERM_N: FERM N-termin 87.0 7.5 0.00016 26.3 8.5 54 8-61 5-65 (80)
183 PRK06944 sulfur carrier protei 86.9 4.9 0.00011 26.2 6.9 61 181-251 5-65 (65)
184 KOG2982 Uncharacterized conser 86.9 0.91 2E-05 39.7 4.0 55 188-242 352-414 (418)
185 TIGR01687 moaD_arch MoaD famil 86.7 6.4 0.00014 27.4 7.8 62 184-250 16-88 (88)
186 cd01760 RBD Ubiquitin-like dom 86.5 2.7 5.9E-05 28.5 5.5 43 4-46 3-46 (72)
187 TIGR01682 moaD molybdopterin c 86.4 6 0.00013 27.0 7.4 59 185-249 17-79 (80)
188 PF00564 PB1: PB1 domain; Int 86.4 4.7 0.0001 27.6 7.0 46 85-130 2-48 (84)
189 cd05992 PB1 The PB1 domain is 86.2 3.6 7.8E-05 28.0 6.2 45 2-46 2-47 (81)
190 cd06396 PB1_NBR1 The PB1 domai 86.0 5 0.00011 27.9 6.6 35 2-36 2-38 (81)
191 smart00455 RBD Raf-like Ras-bi 85.8 3.2 7E-05 27.9 5.6 43 4-46 3-46 (70)
192 cd06408 PB1_NoxR The PB1 domai 85.7 6.5 0.00014 27.7 7.2 47 84-131 2-48 (86)
193 KOG2086 Protein tyrosine phosp 85.5 1.4 3E-05 39.5 4.5 69 83-151 304-376 (380)
194 cd00754 MoaD Ubiquitin domain 85.4 7 0.00015 26.4 7.3 55 95-155 17-75 (80)
195 smart00455 RBD Raf-like Ras-bi 85.3 2.4 5.2E-05 28.6 4.8 41 180-220 6-46 (70)
196 PLN02799 Molybdopterin synthas 85.1 6.1 0.00013 27.2 7.0 65 85-155 2-77 (82)
197 PF14453 ThiS-like: ThiS-like 84.9 4.9 0.00011 26.0 5.7 47 97-155 9-55 (57)
198 PF08337 Plexin_cytopl: Plexin 84.1 3.6 7.8E-05 38.9 6.9 64 183-246 201-290 (539)
199 PTZ00380 microtubule-associate 83.6 3.6 7.7E-05 30.9 5.4 64 167-231 25-88 (121)
200 PF14451 Ub-Mut7C: Mut7-C ubiq 83.5 5.6 0.00012 27.6 6.1 53 183-244 22-75 (81)
201 cd01818 TIAM1_RBD Ubiquitin do 82.9 4.2 9.2E-05 27.8 5.0 49 180-228 6-54 (77)
202 cd01760 RBD Ubiquitin-like dom 82.6 3 6.5E-05 28.3 4.3 41 180-220 6-46 (72)
203 cd05992 PB1 The PB1 domain is 82.4 5.3 0.00012 27.1 5.7 44 87-130 3-47 (81)
204 cd00565 ThiS ThiaminS ubiquiti 82.1 7.9 0.00017 25.3 6.2 56 92-155 5-60 (65)
205 KOG0012 DNA damage inducible p 82.1 2.5 5.4E-05 37.5 4.7 70 1-71 1-75 (380)
206 PF08337 Plexin_cytopl: Plexin 81.8 8.9 0.00019 36.3 8.5 64 94-157 202-290 (539)
207 KOG0012 DNA damage inducible p 80.9 2.9 6.3E-05 37.1 4.7 64 93-156 12-76 (380)
208 PF14453 ThiS-like: ThiS-like 80.2 5.6 0.00012 25.7 4.7 40 13-58 9-48 (57)
209 cd06409 PB1_MUG70 The MUG70 pr 80.0 4.5 9.8E-05 28.5 4.6 39 180-218 7-48 (86)
210 PRK06083 sulfur carrier protei 79.8 18 0.00039 25.3 8.1 63 85-155 17-79 (84)
211 PRK05863 sulfur carrier protei 79.6 12 0.00027 24.5 6.5 56 91-155 5-60 (65)
212 KOG2982 Uncharacterized conser 79.5 4.2 9E-05 35.8 5.1 57 97-154 351-415 (418)
213 smart00295 B41 Band 4.1 homolo 79.5 14 0.0003 29.6 8.2 57 180-236 10-73 (207)
214 KOG4583 Membrane-associated ER 79.1 1 2.2E-05 39.6 1.3 62 85-147 10-76 (391)
215 cd06398 PB1_Joka2 The PB1 doma 78.8 13 0.00028 26.5 6.7 44 3-46 3-52 (91)
216 KOG4250 TANK binding protein k 78.8 4.1 9E-05 39.4 5.3 41 8-48 323-363 (732)
217 TIGR01683 thiS thiamine biosyn 78.6 14 0.0003 24.1 6.5 56 92-155 4-59 (64)
218 PF02196 RBD: Raf-like Ras-bin 78.5 12 0.00025 25.2 6.2 51 3-53 3-56 (71)
219 PF14836 Ubiquitin_3: Ubiquiti 78.3 15 0.00032 26.0 6.7 57 185-242 15-77 (88)
220 KOG4250 TANK binding protein k 77.6 4.8 0.0001 39.0 5.4 46 86-131 317-362 (732)
221 cd06396 PB1_NBR1 The PB1 domai 77.2 13 0.00028 25.9 6.1 40 87-128 3-44 (81)
222 cd06411 PB1_p51 The PB1 domain 77.2 4.7 0.0001 27.8 3.9 37 184-220 7-43 (78)
223 TIGR02958 sec_mycoba_snm4 secr 77.0 7 0.00015 36.3 6.3 63 183-245 11-80 (452)
224 cd06411 PB1_p51 The PB1 domain 76.9 6.5 0.00014 27.1 4.5 38 10-47 7-44 (78)
225 PRK01777 hypothetical protein; 76.5 18 0.00039 25.9 7.0 52 185-245 18-76 (95)
226 PF11069 DUF2870: Protein of u 76.5 4.2 9.1E-05 29.2 3.6 30 125-156 3-32 (98)
227 PRK05659 sulfur carrier protei 75.1 20 0.00043 23.3 7.2 57 91-155 5-61 (66)
228 PRK07696 sulfur carrier protei 74.6 21 0.00046 23.6 6.5 58 90-155 4-62 (67)
229 PRK07440 hypothetical protein; 74.1 23 0.00051 23.6 7.8 62 84-155 4-65 (70)
230 cd01764 Urm1 Urm1-like ubuitin 73.6 19 0.00041 25.7 6.5 60 188-249 23-93 (94)
231 KOG2086 Protein tyrosine phosp 73.3 8 0.00017 34.7 5.3 62 3-65 308-374 (380)
232 KOG3439 Protein conjugation fa 72.7 12 0.00025 27.6 5.1 37 184-220 45-81 (116)
233 TIGR02958 sec_mycoba_snm4 secr 71.3 32 0.00068 32.0 9.0 70 85-155 3-79 (452)
234 PF12754 Blt1: Cell-cycle cont 71.2 1.3 2.9E-05 38.5 0.0 43 19-61 103-160 (309)
235 smart00144 PI3K_rbd PI3-kinase 71.0 37 0.00081 24.8 7.7 73 82-155 15-103 (108)
236 TIGR01682 moaD molybdopterin c 70.8 30 0.00065 23.5 7.7 55 95-155 17-75 (80)
237 PF14732 UAE_UbL: Ubiquitin/SU 70.6 14 0.00029 26.0 5.1 51 193-243 8-67 (87)
238 KOG4572 Predicted DNA-binding 70.4 7.9 0.00017 38.2 4.9 63 182-244 3-69 (1424)
239 TIGR01687 moaD_arch MoaD famil 69.8 34 0.00073 23.6 8.3 57 94-155 16-83 (88)
240 PF02597 ThiS: ThiS family; I 69.5 30 0.00065 23.0 7.0 58 95-155 13-72 (77)
241 PF02196 RBD: Raf-like Ras-bin 69.5 28 0.00061 23.3 6.3 44 87-130 3-47 (71)
242 cd01777 SNX27_RA Ubiquitin dom 69.1 7.5 0.00016 27.4 3.4 33 181-213 9-41 (87)
243 KOG4261 Talin [Cytoskeleton] 69.0 22 0.00048 35.0 7.5 109 93-218 12-130 (1003)
244 cd06398 PB1_Joka2 The PB1 doma 68.8 28 0.00061 24.7 6.4 44 87-130 3-52 (91)
245 smart00295 B41 Band 4.1 homolo 68.0 16 0.00035 29.3 5.9 38 84-121 3-41 (207)
246 PF11834 DUF3354: Domain of un 67.4 23 0.00049 23.8 5.3 44 193-243 25-69 (69)
247 PRK08053 sulfur carrier protei 67.1 33 0.00071 22.5 7.5 56 92-155 6-61 (66)
248 COG2104 ThiS Sulfur transfer p 66.8 35 0.00077 22.8 7.1 58 89-154 5-62 (68)
249 PF14732 UAE_UbL: Ubiquitin/SU 66.2 15 0.00032 25.8 4.6 51 103-155 8-68 (87)
250 cd01768 RA RA (Ras-associating 65.8 39 0.00085 23.1 6.7 45 183-227 12-64 (87)
251 cd01817 RGS12_RBD Ubiquitin do 64.7 29 0.00063 23.6 5.4 40 8-47 8-47 (73)
252 PRK09570 rpoH DNA-directed RNA 64.3 9.4 0.0002 26.4 3.1 52 195-252 19-70 (79)
253 cd01612 APG12_C Ubiquitin-like 64.3 23 0.0005 24.9 5.2 54 188-242 20-78 (87)
254 KOG3439 Protein conjugation fa 63.9 31 0.00067 25.4 5.8 50 83-132 29-83 (116)
255 PRK11130 moaD molybdopterin sy 63.4 45 0.00098 22.8 7.0 52 193-250 25-81 (81)
256 cd06397 PB1_UP1 Uncharacterize 63.3 17 0.00037 25.2 4.2 52 181-232 7-63 (82)
257 PRK06944 sulfur carrier protei 63.1 38 0.00083 21.8 7.7 56 91-155 5-60 (65)
258 cd06410 PB1_UP2 Uncharacterize 62.7 27 0.00059 25.1 5.4 36 8-44 21-56 (97)
259 cd01775 CYR1_RA Ubiquitin doma 61.2 40 0.00087 24.2 5.9 36 3-38 5-41 (97)
260 PF10209 DUF2340: Uncharacteri 60.8 25 0.00055 26.4 5.0 57 99-155 21-107 (122)
261 PTZ00380 microtubule-associate 60.6 11 0.00023 28.4 3.1 48 10-57 41-88 (121)
262 PF14451 Ub-Mut7C: Mut7-C ubiq 59.9 53 0.0011 22.8 6.3 52 93-154 22-74 (81)
263 cd01611 GABARAP Ubiquitin doma 59.1 30 0.00064 25.6 5.2 43 188-230 45-88 (112)
264 PF12754 Blt1: Cell-cycle cont 58.4 3.2 7E-05 36.2 0.0 43 103-146 103-160 (309)
265 cd06397 PB1_UP1 Uncharacterize 56.5 55 0.0012 22.7 5.7 44 2-45 2-45 (82)
266 PF02991 Atg8: Autophagy prote 55.9 22 0.00048 25.9 4.0 44 188-231 37-81 (104)
267 cd06410 PB1_UP2 Uncharacterize 54.8 52 0.0011 23.6 5.8 36 92-128 21-56 (97)
268 KOG4572 Predicted DNA-binding 54.5 44 0.00096 33.3 6.7 63 93-156 4-70 (1424)
269 PF12053 DUF3534: Domain of un 54.2 39 0.00085 26.2 5.3 32 1-32 1-33 (145)
270 KOG0007 Splicing factor 3a, su 53.4 6 0.00013 35.3 0.8 48 92-140 291-339 (341)
271 PF04126 Cyclophil_like: Cyclo 52.9 14 0.00031 27.6 2.7 29 1-29 1-29 (120)
272 PF02017 CIDE-N: CIDE-N domain 52.7 57 0.0012 22.5 5.4 33 20-52 21-55 (78)
273 PF01191 RNA_pol_Rpb5_C: RNA p 51.6 24 0.00053 24.0 3.4 50 195-250 16-65 (74)
274 PF02192 PI3K_p85B: PI3-kinase 50.6 24 0.00051 24.4 3.3 21 12-32 2-22 (78)
275 PRK11840 bifunctional sulfur c 50.3 1.2E+02 0.0027 26.9 8.4 58 90-155 4-61 (326)
276 cd01776 Rin1_RA Ubiquitin doma 50.1 36 0.00078 23.7 4.0 41 186-226 16-61 (87)
277 cd01615 CIDE_N CIDE_N domain, 49.5 71 0.0015 22.0 5.4 34 20-53 21-56 (78)
278 PF00788 RA: Ras association ( 49.1 83 0.0018 21.5 6.8 43 185-227 18-68 (93)
279 cd01782 AF6_RA_repeat1 Ubiquit 47.9 1.1E+02 0.0024 22.5 8.4 49 79-127 18-74 (112)
280 PF11069 DUF2870: Protein of u 47.8 31 0.00066 24.9 3.5 31 41-71 3-33 (98)
281 smart00266 CAD Domains present 47.7 68 0.0015 21.9 5.1 34 20-53 19-54 (74)
282 smart00314 RA Ras association 46.9 52 0.0011 22.7 4.7 45 182-226 14-65 (90)
283 PF00276 Ribosomal_L23: Riboso 46.8 52 0.0011 23.2 4.7 40 94-133 21-61 (91)
284 PF09469 Cobl: Cordon-bleu ubi 46.7 13 0.00028 25.6 1.4 35 202-236 2-39 (79)
285 PF00794 PI3K_rbd: PI3-kinase 46.3 1.1E+02 0.0024 22.0 7.1 73 82-155 14-101 (106)
286 cd01817 RGS12_RBD Ubiquitin do 46.0 60 0.0013 22.1 4.6 38 181-218 7-44 (73)
287 cd01818 TIAM1_RBD Ubiquitin do 45.6 87 0.0019 21.5 5.3 38 5-42 4-42 (77)
288 KOG4598 Putative ubiquitin-spe 45.2 61 0.0013 31.9 6.1 103 95-206 878-991 (1203)
289 PRK01777 hypothetical protein; 44.7 1.1E+02 0.0025 21.8 6.9 48 1-52 4-62 (95)
290 PF02991 Atg8: Autophagy prote 44.1 46 0.001 24.2 4.1 43 15-57 38-81 (104)
291 cd01777 SNX27_RA Ubiquitin dom 43.4 46 0.001 23.5 3.8 39 3-41 4-43 (87)
292 smart00143 PI3K_p85B PI3-kinas 43.1 31 0.00068 23.8 2.9 22 12-33 2-23 (78)
293 KOG0007 Splicing factor 3a, su 42.7 12 0.00027 33.3 1.2 51 180-230 289-340 (341)
294 PRK05738 rplW 50S ribosomal pr 41.5 85 0.0018 22.2 5.1 40 93-132 20-60 (92)
295 cd01768 RA RA (Ras-associating 41.1 88 0.0019 21.3 5.2 28 9-36 12-39 (87)
296 cd01787 GRB7_RA RA (RAS-associ 39.8 1.1E+02 0.0024 21.5 5.3 31 8-38 11-41 (85)
297 cd06404 PB1_aPKC PB1 domain is 38.9 1.3E+02 0.0029 20.9 5.5 44 2-45 2-46 (83)
298 KOG2561 Adaptor protein NUB1, 38.8 21 0.00045 32.9 1.9 51 13-63 53-103 (568)
299 TIGR03595 Obg_CgtA_exten Obg f 38.0 15 0.00033 24.5 0.8 19 225-243 45-63 (69)
300 PF09269 DUF1967: Domain of un 37.4 20 0.00044 23.9 1.3 37 190-243 27-63 (69)
301 PF00276 Ribosomal_L23: Riboso 37.0 83 0.0018 22.2 4.5 41 9-49 20-61 (91)
302 PF08825 E2_bind: E2 binding d 36.4 94 0.002 21.7 4.6 60 188-248 1-74 (84)
303 cd06539 CIDE_N_A CIDE_N domain 36.1 1.5E+02 0.0032 20.5 5.3 34 20-53 21-56 (78)
304 cd01776 Rin1_RA Ubiquitin doma 36.0 74 0.0016 22.2 3.8 46 8-53 11-62 (87)
305 COG5100 NPL4 Nuclear pore prot 35.5 1.6E+02 0.0035 26.9 6.9 68 87-156 3-79 (571)
306 KOG3157 Proline synthetase co- 35.4 13 0.00029 30.6 0.2 45 194-241 186-234 (244)
307 PF01376 Enterotoxin_b: Heat-l 35.4 51 0.0011 22.8 3.0 30 3-32 38-68 (102)
308 smart00266 CAD Domains present 35.3 1E+02 0.0023 21.0 4.5 44 183-227 9-54 (74)
309 PF00788 RA: Ras association ( 35.0 1.5E+02 0.0031 20.2 6.2 32 11-42 18-51 (93)
310 cd06536 CIDE_N_ICAD CIDE_N dom 34.5 1.2E+02 0.0027 21.0 4.8 34 20-53 21-58 (80)
311 KOG2689 Predicted ubiquitin re 34.2 1.3E+02 0.0029 25.9 5.9 71 83-153 209-284 (290)
312 smart00314 RA Ras association 33.3 1.2E+02 0.0027 20.8 4.9 30 9-38 15-44 (90)
313 PF11525 CopK: Copper resistan 33.3 24 0.00051 23.7 1.1 16 230-245 8-23 (73)
314 cd06404 PB1_aPKC PB1 domain is 31.8 1.8E+02 0.0039 20.3 6.3 45 87-131 3-48 (83)
315 COG1977 MoaD Molybdopterin con 31.5 1.3E+02 0.0029 20.7 4.7 55 191-250 25-84 (84)
316 cd06538 CIDE_N_FSP27 CIDE_N do 31.5 1.5E+02 0.0033 20.4 4.8 34 20-53 21-55 (79)
317 TIGR03636 L23_arch archaeal ri 30.8 1.3E+02 0.0029 20.5 4.5 32 94-125 15-46 (77)
318 cd01615 CIDE_N CIDE_N domain, 30.7 1.4E+02 0.003 20.6 4.5 44 183-227 11-56 (78)
319 KOG3391 Transcriptional co-rep 30.6 58 0.0013 24.9 2.9 64 96-160 54-140 (151)
320 cd01787 GRB7_RA RA (RAS-associ 30.5 1.9E+02 0.0042 20.2 5.7 32 92-123 11-42 (85)
321 PRK05738 rplW 50S ribosomal pr 30.0 1.1E+02 0.0025 21.6 4.2 40 9-48 20-60 (92)
322 PF02505 MCR_D: Methyl-coenzym 29.5 2.6E+02 0.0057 21.9 6.3 110 100-232 10-120 (153)
323 COG2080 CoxS Aerobic-type carb 28.9 98 0.0021 24.4 4.0 27 1-27 2-28 (156)
324 PRK14548 50S ribosomal protein 28.7 1.6E+02 0.0034 20.6 4.6 32 94-125 22-53 (84)
325 PRK12280 rplW 50S ribosomal pr 28.5 1.7E+02 0.0037 23.1 5.3 63 183-245 22-93 (158)
326 PF02037 SAP: SAP domain; Int 28.5 70 0.0015 18.1 2.4 19 193-212 3-21 (35)
327 PF08783 DWNN: DWNN domain; I 28.3 2E+02 0.0042 19.6 5.3 24 96-119 12-36 (74)
328 cd01611 GABARAP Ubiquitin doma 28.2 1.3E+02 0.0028 22.2 4.4 57 97-155 44-105 (112)
329 PF06234 TmoB: Toluene-4-monoo 27.9 2.2E+02 0.0047 20.0 7.9 69 86-155 5-83 (85)
330 PF14847 Ras_bdg_2: Ras-bindin 27.8 1.7E+02 0.0036 21.4 4.8 35 3-37 3-38 (105)
331 cd05484 retropepsin_like_LTR_2 26.7 1.4E+02 0.0029 20.6 4.2 35 3-37 3-37 (91)
332 PF04126 Cyclophil_like: Cyclo 25.8 83 0.0018 23.4 3.1 29 85-113 1-29 (120)
333 PF13180 PDZ_2: PDZ domain; PD 25.7 79 0.0017 21.2 2.8 36 207-242 30-67 (82)
334 smart00144 PI3K_rbd PI3-kinase 25.4 2.7E+02 0.0058 20.2 6.5 52 8-59 27-87 (108)
335 PLN03111 DNA-directed RNA poly 24.2 81 0.0018 26.0 2.9 123 103-252 77-199 (206)
336 TIGR03636 L23_arch archaeal ri 23.8 1.7E+02 0.0038 20.0 4.1 33 9-41 14-46 (77)
337 KOG2689 Predicted ubiquitin re 23.4 2.3E+02 0.005 24.5 5.5 63 180-242 217-284 (290)
338 PF04110 APG12: Ubiquitin-like 23.2 1.7E+02 0.0036 20.6 4.0 34 187-220 19-53 (87)
339 CHL00030 rpl23 ribosomal prote 23.0 2.1E+02 0.0045 20.4 4.5 33 93-125 19-51 (93)
340 COG0089 RplW Ribosomal protein 22.9 2E+02 0.0043 20.6 4.3 38 9-46 21-59 (94)
341 PF13699 DUF4157: Domain of un 22.8 1.1E+02 0.0024 20.9 3.0 50 197-246 4-53 (79)
342 PF10407 Cytokin_check_N: Cdc1 22.6 1.7E+02 0.0036 19.9 3.8 25 10-34 3-27 (73)
343 PRK14548 50S ribosomal protein 22.6 1.9E+02 0.0042 20.1 4.2 33 9-41 21-53 (84)
344 cd06537 CIDE_N_B CIDE_N domain 22.4 2.8E+02 0.006 19.3 5.3 53 20-77 21-75 (81)
345 KOG2660 Locus-specific chromos 22.2 70 0.0015 28.3 2.3 47 12-58 166-214 (331)
346 cd06405 PB1_Mekk2_3 The PB1 do 22.2 2.7E+02 0.0059 19.1 5.5 43 2-47 2-44 (79)
347 PF00794 PI3K_rbd: PI3-kinase 21.6 2.5E+02 0.0055 20.0 4.9 57 3-59 19-85 (106)
348 smart00513 SAP Putative DNA-bi 21.5 1.3E+02 0.0027 16.9 2.6 19 193-212 3-21 (35)
349 KOG4261 Talin [Cytoskeleton] 21.0 4.8E+02 0.01 26.3 7.7 104 5-120 8-121 (1003)
350 PF03671 Ufm1: Ubiquitin fold 20.8 2.5E+02 0.0053 19.1 4.1 57 97-154 19-76 (76)
351 PRK09908 xanthine dehydrogenas 20.3 1.7E+02 0.0036 23.2 3.9 27 2-28 8-34 (159)
352 cd01612 APG12_C Ubiquitin-like 20.2 2.2E+02 0.0047 19.9 4.1 34 14-47 20-53 (87)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.80 E-value=7.6e-19 Score=128.92 Aligned_cols=94 Identities=23% Similarity=0.407 Sum_probs=82.4
Q ss_pred ccccccCCcEEEEEecCCCCccCCcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceeccc
Q 045158 57 DYPIVKEGTKIDLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDD 135 (252)
Q Consensus 57 ~~~i~~~~t~i~l~~~~~~~~~~~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~ 135 (252)
.+++.+-++ +|+. +++.+.|+|+|+ +.|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+
T Consensus 9 ~~~~~~~~~-~~~~--------~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~- 78 (103)
T cd01802 9 FFNEDNMGP-FHYK--------LPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELE- 78 (103)
T ss_pred ccccCCcce-eEEe--------eccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECC-
Confidence 455655556 7665 456778999999 68999999999999999999999999999999999999999996
Q ss_pred ccccccccCCCCCCEEEEEeeeccccCCC
Q 045158 136 EFRNLSEYGIREFSEIIVFLKTMNRLRDN 164 (252)
Q Consensus 136 d~~~L~~y~i~~~s~i~l~~~~~~~~~~~ 164 (252)
|+.+|++|+|+++++|+|.+ |++||
T Consensus 79 D~~tL~dy~I~~~stL~l~~----~l~GG 103 (103)
T cd01802 79 DEYCLNDYNISEGCTLKLVL----AMRGG 103 (103)
T ss_pred CCCcHHHcCCCCCCEEEEEE----ecCCC
Confidence 88999999999999999998 56554
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.78 E-value=7.6e-19 Score=121.77 Aligned_cols=72 Identities=28% Similarity=0.488 Sum_probs=68.1
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP 73 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~ 73 (252)
|+|+|+. .|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||.++++ ++|++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~-l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAK-LNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCE-EEEEEcC
Confidence 8999965 9999999999999999999999999999999999999999999999999999998887 8988764
No 3
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.77 E-value=2.1e-18 Score=119.52 Aligned_cols=74 Identities=19% Similarity=0.438 Sum_probs=68.5
Q ss_pred EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCCC
Q 045158 85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDN 164 (252)
Q Consensus 85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~~ 164 (252)
|+|+||. +++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|+++++||+.+ |++||
T Consensus 1 mqi~vk~-~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~-D~~tL~~~~i~~~~tl~l~~----~l~GG 74 (74)
T cd01793 1 MQLFVRA-QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLE-DDATLGQCGVEELCTLEVAG----RLLGG 74 (74)
T ss_pred CEEEEEC-CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECC-CCCCHHHcCCCCCCEEEEEE----ecCCC
Confidence 6899996 478999999999999999999999999999999999999996 88999999999999999998 66664
No 4
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.76 E-value=5.5e-18 Score=124.36 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=82.2
Q ss_pred cccCCCCCCEEEEEeeeccccCCCCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecC
Q 045158 141 SEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ 220 (252)
Q Consensus 141 ~~y~i~~~s~i~l~~~~~~~~~~~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g 220 (252)
-.+++.+-+++|+.+ |++++ |+++|+ ++.|++++++|++++||++||++|++++|+|+++|+|+|+|
T Consensus 8 ~~~~~~~~~~~~~~~----~~~~~-----M~I~Vk----~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~G 74 (103)
T cd01802 8 PFFNEDNMGPFHYKL----PFYDT-----MELFIE----TLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNN 74 (103)
T ss_pred CccccCCcceeEEee----ccCCC-----EEEEEE----cCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECC
Confidence 357788899999988 44443 888886 57899999999999999999999999999999999999999
Q ss_pred eeecCCccccccCCCCCCEEEEec
Q 045158 221 RIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 221 ~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
+.|+|+.+|++|+|++|+||+|..
T Consensus 75 k~L~D~~tL~dy~I~~~stL~l~~ 98 (103)
T cd01802 75 MELEDEYCLNDYNISEGCTLKLVL 98 (103)
T ss_pred EECCCCCcHHHcCCCCCCEEEEEE
Confidence 999999999999999999999964
No 5
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.76 E-value=3.5e-18 Score=118.41 Aligned_cols=72 Identities=21% Similarity=0.413 Sum_probs=68.3
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT 157 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~ 157 (252)
|+|+|+ ..|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|+|+++++|+|+++|
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALA-DDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCCHHHCCCCCCCEEEEEEcC
Confidence 689999 68999999999999999999999999999999999999999996 8899999999999999999853
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.74 E-value=6.8e-18 Score=116.95 Aligned_cols=70 Identities=24% Similarity=0.304 Sum_probs=65.2
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +++++++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+|++|+|.++++ +|+.++
T Consensus 1 mqi~vk~-~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~t-l~l~~~ 70 (74)
T cd01793 1 MQLFVRA-QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCT-LEVAGR 70 (74)
T ss_pred CEEEEEC-CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCE-EEEEEe
Confidence 8999976 478999999999999999999999999999999999999999999999999998877 888753
No 7
>PTZ00044 ubiquitin; Provisional
Probab=99.74 E-value=1.3e-17 Score=116.22 Aligned_cols=71 Identities=25% Similarity=0.461 Sum_probs=67.9
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
|+|+|+ ..|+++++++++++||++||++|+++.|+|++.|+|+|+|+.|+ |+.+|++|+++++++||+.++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMS-DDLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEcc-CCCcHHHcCCCCCCEEEEEEE
Confidence 689999 68999999999999999999999999999999999999999996 989999999999999999983
No 8
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.74 E-value=9.6e-18 Score=117.11 Aligned_cols=73 Identities=26% Similarity=0.406 Sum_probs=67.0
Q ss_pred CEEEEEe-CCeE-EEEE-ecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVA-NGHE-FVLE-VGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~-~g~~-~~l~-v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+. +|+. +.++ +.+++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|+++++
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~-i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDI-IQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCE-EEEEEecC
Confidence 9999966 8886 6895 89999999999999999999999999999999999999999999998877 99987654
No 9
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.71 E-value=3.5e-17 Score=114.23 Aligned_cols=72 Identities=19% Similarity=0.371 Sum_probs=67.0
Q ss_pred EEEEEE-eCCcE-EEEe-eCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158 85 IHIIIK-FPSRK-FNID-VDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT 157 (252)
Q Consensus 85 ~~i~v~-~~g~~-~~l~-v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~ 157 (252)
|+|+|+ ..|++ +.++ +.+++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|++|||+++++|+|++++
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~-D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQME-DGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECC-CCCCHHHcCCCCCCEEEEEEec
Confidence 789999 67886 6895 89999999999999999999999999999999996 9999999999999999999954
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.71 E-value=3.6e-17 Score=113.31 Aligned_cols=68 Identities=24% Similarity=0.388 Sum_probs=65.0
Q ss_pred EEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 87 IIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 87 i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
|+|+ ..|+++++++++++||++||++|++..|+|+++|+|.|+|+.|+ |+.+|++|+|+++++++|.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~-D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPME-DEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCCHHHcCCCCCCEEEEEE
Confidence 5788 57999999999999999999999999999999999999999996 88999999999999999998
No 11
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.7e-18 Score=130.18 Aligned_cols=115 Identities=24% Similarity=0.422 Sum_probs=93.1
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD 163 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~ 163 (252)
|+|||+ +.++++.+++.+++||..+|++|++.+|||+++|+|+|.|+.|+ |+++|+||+|+..++|+|++ |++|
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLe-dgrtlSDY~Iqkestl~l~l----~l~G 75 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLRG 75 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccc-cCCccccccccccceEEEEE----EecC
Confidence 679999 79999999999999999999999999999999999999999997 88999999999999999999 8999
Q ss_pred CCccccceeeEEeeeeccCCceEE------EEecCCCcHHHHHHHHh
Q 045158 164 NPPIRRLSFKVQTSSSLLNGASIP------LEMQDSSTVNELRHLLL 204 (252)
Q Consensus 164 ~~~~~~~~i~v~~~~~~~~g~~~~------l~v~~~~tV~~Lk~~i~ 204 (252)
|+..++-..+..+.......+... ..|+.+-.|..+.+++.
T Consensus 76 g~kkrkkk~~~~pk~~~~~~kk~~l~~~~y~kvd~ngkiq~l~~~~~ 122 (156)
T KOG0004|consen 76 GAKKRKKKSYTTPKKIKSKHKKVSLAVLKYYKVDENGKVQRLRRECP 122 (156)
T ss_pred CcccccccccccccccCCCccccccCCccceeeccCcchhhhhhhcC
Confidence 887766544543322112222222 34666667777777664
No 12
>PTZ00044 ubiquitin; Provisional
Probab=99.71 E-value=5.8e-17 Score=112.85 Aligned_cols=71 Identities=24% Similarity=0.406 Sum_probs=66.9
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.++++ +|+.++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~-i~l~~~ 72 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGST-IHMVLQ 72 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCE-EEEEEE
Confidence 8999965 9999999999999999999999999999999999999999999999999999997777 888764
No 13
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.70 E-value=6.8e-17 Score=112.39 Aligned_cols=75 Identities=32% Similarity=0.608 Sum_probs=69.8
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD 163 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~ 163 (252)
|+|+|+ ..|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|++++|++|++.+ |++|
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~i~l~~----~~~g 75 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLRG 75 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEE----EccC
Confidence 689999 57999999999999999999999999999999999999999996 88999999999999999998 5555
Q ss_pred C
Q 045158 164 N 164 (252)
Q Consensus 164 ~ 164 (252)
|
T Consensus 76 g 76 (76)
T cd01803 76 G 76 (76)
T ss_pred C
Confidence 4
No 14
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.70 E-value=4e-17 Score=112.37 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=64.6
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT 70 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~ 70 (252)
|+|+|+. .|+.+.++++|++||++||++|+++.|+|+++|||+|+|+.|+|+.+|++|||.++++ |||.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~st-v~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMN-LELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCE-EEEE
Confidence 7888865 8999999999999999999999999999999999999999999999999999997777 8874
No 15
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.70 E-value=4.3e-17 Score=111.42 Aligned_cols=67 Identities=18% Similarity=0.278 Sum_probs=62.2
Q ss_pred EEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158 4 IIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI 71 (252)
Q Consensus 4 ~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~ 71 (252)
.|+. +|+++.+++++++||+++|++|++.+|+|+++|+|+|+|++|+|+.+|++|+|.++++ |||++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~t-v~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYV-VQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCE-EEEEe
Confidence 3544 8999999999999999999999999999999999999999999999999999997766 99875
No 16
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.70 E-value=1.2e-16 Score=111.22 Aligned_cols=70 Identities=24% Similarity=0.497 Sum_probs=67.0
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
|+|+|+ ..|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|. |+.+|++|++++|++|++.+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~-d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEcc-CCCCHHHcCCCCCCEEEEEE
Confidence 679999 58999999999999999999999999999999999999999996 88999999999999999998
No 17
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.69 E-value=9e-17 Score=110.59 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=66.7
Q ss_pred cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
+|.|+|+ ..|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|. |+.+|++|||++|++|||..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~-D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFK-DHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCC-CCCCHHHcCCCCCCEEEEEe
Confidence 4789999 57999999999999999999999999999999999999999996 88999999999999999864
No 18
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.69 E-value=1.1e-16 Score=111.70 Aligned_cols=73 Identities=29% Similarity=0.393 Sum_probs=67.7
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCC--CCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNI--PATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i--~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+. +|+.+.+++++++||.+||++|++.+|+ |+++|+|+|+|+.|+|+.+|++||+.++++ |+++++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~-i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDF-VVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCE-EEEEEecC
Confidence 8999965 9999999999999999999999999999 999999999999999999999999997777 88877643
No 19
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.68 E-value=1.4e-16 Score=108.95 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=63.2
Q ss_pred EEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 88 IIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 88 ~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.|+ .+|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|.+|+|+++++|||++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~-D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLT-DKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCCCCCCEEEEEe
Confidence 356 47999999999999999999999999999999999999999996 89999999999999999986
No 20
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.68 E-value=1.7e-16 Score=109.98 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=63.9
Q ss_pred eccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecC
Q 045158 179 SLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKG 245 (252)
Q Consensus 179 ~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~ 245 (252)
+++.|++++++|++++||++||++|++..|+|+++|+|+|+|+.|+|+++|.+|||+++++|+|...
T Consensus 4 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 4 RNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred ECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 4688999999999999999999999999999999999999999999999999999999999999743
No 21
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.67 E-value=3e-16 Score=109.72 Aligned_cols=70 Identities=21% Similarity=0.352 Sum_probs=66.3
Q ss_pred cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.|+|+|+ ..|+.+++++++++||++||++|+++.|+|+++|+|.|+|+.|. |+ +|++|||.+|++|+|+.
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~-d~-~L~~~gi~~~~~i~l~~ 71 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLS-SG-KLQDLGLGDGSKLTLVP 71 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCC-CC-cHHHcCCCCCCEEEEEe
Confidence 3889999 57999999999999999999999999999999999999999996 77 99999999999999998
No 22
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.66 E-value=2.9e-16 Score=107.59 Aligned_cols=68 Identities=21% Similarity=0.395 Sum_probs=64.3
Q ss_pred EEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 87 IIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 87 i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
|+|+ ..|+++.+++++++||++||++|+++.|+|+++|+|+|+|++|+ |+.+|++|+|+++|++||+.
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~-d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELR-NTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEe
Confidence 5778 57999999999999999999999999999999999999999996 88999999999999999975
No 23
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.66 E-value=5.7e-16 Score=108.06 Aligned_cols=71 Identities=37% Similarity=0.534 Sum_probs=67.4
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCC--CCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGT--PIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gi--p~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
|+|+|+ ..|+.+.+++++++||++||++|++.+|+ |+++|+|+|+|+.|+ |+.+|++|+|++|++|+++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILK-DDTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEcc-CCCCHHHcCCCCCCEEEEEEe
Confidence 689999 68999999999999999999999999999 999999999999996 889999999999999999885
No 24
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=9.9e-18 Score=119.20 Aligned_cols=74 Identities=31% Similarity=0.597 Sum_probs=69.6
Q ss_pred EEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCCC
Q 045158 86 HIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDN 164 (252)
Q Consensus 86 ~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~~ 164 (252)
+++++ ++|+++++++++++||.++|++|+++.|+|+++|+|.|+|+.|+ |+.||++|||+..+|||+.+ |++||
T Consensus 2 ~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LE-D~~Tla~Y~i~~~~Tl~~~~----rL~GG 76 (128)
T KOG0003|consen 2 QIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVL----RLRGG 76 (128)
T ss_pred cEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccc-cCCcccccCccchhhhhhhH----HHhcC
Confidence 45666 89999999999999999999999999999999999999999997 99999999999999999998 77776
No 25
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.66 E-value=3.9e-16 Score=109.11 Aligned_cols=70 Identities=24% Similarity=0.354 Sum_probs=65.3
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. .|+.+.+++++++||++||++|+++.++|+++|+|+|+|+.|+|+ +|++|||.++++ |+|+..
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~-i~l~~~ 72 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSK-LTLVPT 72 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCE-EEEEee
Confidence 8999966 899999999999999999999999999999999999999999999 999999997777 888754
No 26
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.65 E-value=3.6e-16 Score=107.13 Aligned_cols=68 Identities=15% Similarity=0.317 Sum_probs=63.0
Q ss_pred EEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158 3 IIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI 71 (252)
Q Consensus 3 v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~ 71 (252)
|+|+. .|+++.+++++++||+++|++|+++.|+|+++|+|+|+|++|+|+.+|++|||.++++ +||+.
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~st-l~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSI-LHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCE-EEEEe
Confidence 46754 8999999999999999999999999999999999999999999999999999998887 88763
No 27
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.65 E-value=7.1e-16 Score=107.21 Aligned_cols=71 Identities=34% Similarity=0.543 Sum_probs=66.5
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.++++ |++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~-i~l~~~ 72 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCE-EEEEEE
Confidence 8999965 8999999999999999999999999999999999999999999999999999997777 888754
No 28
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.64 E-value=9.6e-16 Score=106.56 Aligned_cols=71 Identities=25% Similarity=0.402 Sum_probs=66.6
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|++.++++ |++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~-i~l~~~ 72 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSV-LHLVLA 72 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCE-EEEEEE
Confidence 8999966 8999999999999999999999999999999999999999999999999999997777 888764
No 29
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=2.8e-17 Score=116.87 Aligned_cols=69 Identities=35% Similarity=0.536 Sum_probs=64.9
Q ss_pred CEEEE-EeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158 1 MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT 70 (252)
Q Consensus 1 M~v~v-~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~ 70 (252)
|++++ ++.|++++++++|++||..+|++|++++|+|+++|+|+|+|+.|+|..||++|||..++| +|++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~T-l~~~ 70 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST-LHLV 70 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhh-hhhh
Confidence 66777 669999999999999999999999999999999999999999999999999999999999 7765
No 30
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.64 E-value=1.3e-15 Score=104.79 Aligned_cols=70 Identities=33% Similarity=0.420 Sum_probs=66.2
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
|+|+|+ ..|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|. |+.+|++|++++|+++++..
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLK-DDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECC-CcCcHHHCCCCCCCEEEEEe
Confidence 579999 57899999999999999999999999999999999999999996 88999999999999999975
No 31
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.64 E-value=5.7e-16 Score=108.87 Aligned_cols=72 Identities=25% Similarity=0.308 Sum_probs=66.6
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEE--EEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTL--AVSGWELVDGLDMEDYPIVKEGTKIDLTINP 73 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L--~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~ 73 (252)
|+|+|+. .|+.+.+++++++||++||.+|++..|+|+++|+| +|+|+.|+|+.+|++||+.++++ |+|++++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~-l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGST-VLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCE-EEEEEEc
Confidence 6888966 89999999999999999999999999999999999 89999999999999999997777 8888763
No 32
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.63 E-value=1.4e-15 Score=104.66 Aligned_cols=70 Identities=27% Similarity=0.390 Sum_probs=65.5
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI 71 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~ 71 (252)
|+|+|+. .|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+.++++ +++..
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~-l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHT-IHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCE-EEEEe
Confidence 8999966 8999999999999999999999999999999999999999999999999999997776 88763
No 33
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.63 E-value=1.1e-15 Score=105.59 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=64.5
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEE---cCeecCCCCCccccccccCCcEEEEE
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAV---SGWELVDGLDMEDYPIVKEGTKIDLT 70 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~---~g~~L~d~~~L~~~~i~~~~t~i~l~ 70 (252)
|.|.|+++|+.+.+++++++||++||++|++.+|+|+++|+|+| .|+.|.|+.+|++|+|.+++. |+|+
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~-i~lm 72 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTK-IMMM 72 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCE-EEEE
Confidence 67899999999999999999999999999999999999999996 899999999999999996655 7775
No 34
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.63 E-value=1.1e-15 Score=106.34 Aligned_cols=70 Identities=27% Similarity=0.383 Sum_probs=64.6
Q ss_pred EeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCCC
Q 045158 90 KFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDN 164 (252)
Q Consensus 90 ~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~~ 164 (252)
+++|+++++++++++||++||++|+..+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++ +++||
T Consensus 4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~~~i~~g~~l~v~~----~~~gg 73 (76)
T cd01800 4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIK-DSNSLAYYNLANGTIIHLQL----KERGG 73 (76)
T ss_pred ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcC-CCCcHHHcCCCCCCEEEEEE----ecCCC
Confidence 356899999999999999999999999999999999999999996 88999999999999999999 55554
No 35
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.63 E-value=1.2e-15 Score=107.25 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=67.4
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEE--EECceecccccccccccCCCCCCEEEEEee
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL--FFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L--~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
|+|+|+ ..|+++.+++++++||++||++|++..|+|+++|+| .|+|+.|. |+.+|++|||.+|++|+|+++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~-D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQ-DGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCC-CCCCHHHcCCCCCCEEEEEEE
Confidence 889999 589999999999999999999999999999999999 88999996 889999999999999999985
No 36
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.4e-16 Score=99.43 Aligned_cols=68 Identities=24% Similarity=0.398 Sum_probs=63.2
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEE
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDL 69 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l 69 (252)
|.|.|++ +|+.+.++++|.|+|..+|..|++++||||.+|||+|+|+.+.|+.+-++|++..+|. +||
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSV-lHl 69 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSV-LHL 69 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhcccee-Eee
Confidence 7888954 9999999999999999999999999999999999999999999999999999995554 876
No 37
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.61 E-value=1.7e-15 Score=103.96 Aligned_cols=68 Identities=25% Similarity=0.402 Sum_probs=61.3
Q ss_pred EEEE-e-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158 87 IIIK-F-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 87 i~v~-~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
|+|+ . .|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+||..+|++|+|++|++|+|.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 4567 4 688899999999999999999999999999999999999999733478999999999999973
No 38
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.61 E-value=1.8e-15 Score=103.30 Aligned_cols=65 Identities=22% Similarity=0.348 Sum_probs=62.1
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
+..|+.++++|++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|.+|||++||+|+++-
T Consensus 2 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~ 66 (69)
T PF00240_consen 2 TLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVI 66 (69)
T ss_dssp ETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEE
T ss_pred CCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999863
No 39
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=5.1e-16 Score=118.55 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=66.1
Q ss_pred ceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158 170 LSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 170 ~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
|.|+|+ ++.|+++.++|.+++||..+|.+|++++|||+++|+|+|.|+.|+|+++|+||+|+..+||+|+-
T Consensus 1 m~ifVk----~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l 71 (156)
T KOG0004|consen 1 MQIFVK----TLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (156)
T ss_pred Cccchh----hccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEE
Confidence 345654 68899999999999999999999999999999999999999999999999999999999999973
No 40
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.61 E-value=3.4e-15 Score=101.87 Aligned_cols=66 Identities=38% Similarity=0.560 Sum_probs=61.6
Q ss_pred eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158 7 ANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP 73 (252)
Q Consensus 7 ~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~ 73 (252)
.+|+.+.+++++++||.+||++|+++.++|++.|+|+|+|+.|+|+.+|++|||.++++ |+|.+++
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~-I~l~~k~ 68 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGST-IHLVIKP 68 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEE-EEEEESS
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCE-EEEEEec
Confidence 37899999999999999999999999999999999999999999999999999997776 8888754
No 41
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.61 E-value=3.2e-15 Score=103.25 Aligned_cols=69 Identities=20% Similarity=0.353 Sum_probs=65.2
Q ss_pred EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE---CceecccccccccccCCCCCCEEEEE
Q 045158 85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF---SGIELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~---~g~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
|.|.|++.|+.+.+++++++||++||++|++.+|+|+++|+|+| .|+.|. |+.+|++|+|++|+.|+|+
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~-D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAE-DDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCC-CCcCHHHcCCCCCCEEEEE
Confidence 46889999999999999999999999999999999999999996 899996 8899999999999999986
No 42
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.60 E-value=3.4e-15 Score=102.50 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=62.9
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI 71 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~ 71 (252)
|+|+|+. .|+ ..+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.++++ ||+..
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~st-l~l~~ 70 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLT-VHLVI 70 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCE-EEEEE
Confidence 6788865 776 589999999999999999999999999999999999999999999999997777 88764
No 43
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.60 E-value=4.1e-15 Score=102.03 Aligned_cols=70 Identities=20% Similarity=0.374 Sum_probs=65.9
Q ss_pred EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
++|.|++.|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|. |+.+|++|++++|++|+++.
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~-d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERD-DAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccC-ccCcHHHcCCCCCCEEEEec
Confidence 46889988999999999999999999999999999999999999999996 88999999999999999863
No 44
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.59 E-value=5.4e-15 Score=101.52 Aligned_cols=69 Identities=17% Similarity=0.323 Sum_probs=63.3
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
+.|+|+ ..|+ ..+++++++||++||++|+++.|+|+.+|+|.|+|+.|+ |+.+|++||+++|++||+.+
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~-d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILK-DTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCcHHHcCCCCCCEEEEEE
Confidence 357888 5676 589999999999999999999999999999999999996 88999999999999999986
No 45
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.59 E-value=6e-15 Score=101.20 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=64.6
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT 70 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~ 70 (252)
|+|+|+..|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.++++ |+++
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~-l~v~ 69 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSK-VMLL 69 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCE-EEEe
Confidence 67899889999999999999999999999999999999999999999999999999999997766 7765
No 46
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.58 E-value=3.6e-15 Score=103.78 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=63.6
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCC
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG 250 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~ 250 (252)
++|++++++|++++||++||++|+...|+|++.|+|+|+|+.|+|+++|++|+|++|++|+++.. ..+|
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~-~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLK-ERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEe-cCCC
Confidence 57999999999999999999999999999999999999999999999999999999999998643 4444
No 47
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.58 E-value=4.4e-15 Score=101.91 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=60.4
Q ss_pred ecc-CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCC-ccccccCCCCCCEEEE
Q 045158 179 SLL-NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDN-CSLRWHGVEYGDILYV 242 (252)
Q Consensus 179 ~~~-~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~-~tL~~y~I~~gsti~l 242 (252)
++. +|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|++|||++||+|+|
T Consensus 4 ~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 4 YTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred EECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 345 799999999999999999999999999999999999999999987 6899999999999997
No 48
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.6e-15 Score=96.38 Aligned_cols=69 Identities=22% Similarity=0.464 Sum_probs=64.9
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
|.|.|+ ++|+.+.++++++++|..+|++|+++.||||.+|+|+|.|+.|. |+.+-.+|++..||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~-DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMN-DDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcccccc-ccccHHHhhhccceeEeeC
Confidence 457788 69999999999999999999999999999999999999999996 8899999999999999974
No 49
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.55 E-value=1.3e-14 Score=100.59 Aligned_cols=70 Identities=21% Similarity=0.201 Sum_probs=59.4
Q ss_pred CEEEEEe-CCeE--EEEEecCCCcHHHHHHHHHHHhC--CCCCceEEEEcCeecCCCCCccccc--cccCCcEEEEEe
Q 045158 1 MRIIIVA-NGHE--FVLEVGLQEPVLEIKRKIEQIFN--IPATSQTLAVSGWELVDGLDMEDYP--IVKEGTKIDLTI 71 (252)
Q Consensus 1 M~v~v~~-~g~~--~~l~v~~~~tV~~lK~~I~~~~~--i~~~~q~L~~~g~~L~d~~~L~~~~--i~~~~t~i~l~~ 71 (252)
|.++|+. +++. +.+++++++||.+||++|++..+ .|+++|||+|+|+.|+|+.+|++|. +.++.| |||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~t-iHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHM-VHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCce-EEEEe
Confidence 4678876 7777 56666999999999999999874 4579999999999999999999996 886666 99863
No 50
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.52 E-value=1.3e-13 Score=98.29 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=72.1
Q ss_pred CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158 82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR 160 (252)
Q Consensus 82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~ 160 (252)
+..|.|+|+ ..|+.+.++|.+++|++.||.+++++.|+|+++|+|+|+|+.|. ++.|+.+|++.+|++|++++ +
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~-~~~T~~~l~m~d~d~I~v~l----~ 83 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIR-DNQTPDDLGMEDGDEIEVML----E 83 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECC-CCCCHHHcCCCCCCEEEEEE----e
Confidence 556899999 57999999999999999999999999999999999999999996 88999999999999999998 6
Q ss_pred cCCC
Q 045158 161 LRDN 164 (252)
Q Consensus 161 ~~~~ 164 (252)
++||
T Consensus 84 l~GG 87 (87)
T cd01763 84 QTGG 87 (87)
T ss_pred cccC
Confidence 6654
No 51
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.50 E-value=8.5e-14 Score=96.27 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=58.4
Q ss_pred CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCC-CCCEEEEEe
Q 045158 92 PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIR-EFSEIIVFL 155 (252)
Q Consensus 92 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~-~~s~i~l~~ 155 (252)
.|.++.+++++++||++||++|++++|+|+++|+| |+|+.|.+|..+|++|+++ +|++++|.+
T Consensus 11 ~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 11 HTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 57889999999999999999999999999999999 9999996577999999998 889999864
No 52
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.49 E-value=4e-14 Score=96.75 Aligned_cols=54 Identities=24% Similarity=0.450 Sum_probs=49.5
Q ss_pred CCCcHHHHHHHHhhc--CCCC-CCceEEeecCeeecCCccccccCCCCCCEEEEecC
Q 045158 192 DSSTVNELRHLLLSS--KILP-REDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKG 245 (252)
Q Consensus 192 ~~~tV~~Lk~~i~~~--~gip-~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~ 245 (252)
.++||++||++|+++ +|+| +++|+|+|.|+.|+|++||++|||++|++|+|+.+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 468999999999999 4675 99999999999999999999999999999999853
No 53
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.48 E-value=1.5e-13 Score=91.97 Aligned_cols=63 Identities=29% Similarity=0.395 Sum_probs=59.0
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccC
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKE 63 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~ 63 (252)
|+|+|+..++.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.++
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~ 63 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDG 63 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCC
Confidence 899998755789999999999999999999999999999999999999999999999999854
No 54
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.48 E-value=1.8e-13 Score=94.85 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=61.0
Q ss_pred EEEEEE-eCCcE--EEEeeCCCccHHHHHHHHHHHhC--CCCccEEEEECceecccccccccccC--CCCCCEEEEEe
Q 045158 85 IHIIIK-FPSRK--FNIDVDRTDTVRSLKEKIHIIDG--TPIKRMLLFFSGIELDDEFRNLSEYG--IREFSEIIVFL 155 (252)
Q Consensus 85 ~~i~v~-~~g~~--~~l~v~~~~TV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~~d~~~L~~y~--i~~~s~i~l~~ 155 (252)
+.++|| ..++. +.+++++++||++||++|++..+ .|+++|+|+|+|+.|. |+.+|++|. +.++.+|||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLk-D~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLP-DHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeecc-chhhHHHHhhcccCCceEEEEe
Confidence 678899 46766 66666899999999999999874 5589999999999996 889999996 99999999975
No 55
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.47 E-value=1.5e-13 Score=95.02 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=57.7
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeec-CCccccccCCC-CCCEEEEe
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMR-DNCSLRWHGVE-YGDILYVF 243 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~-d~~tL~~y~I~-~gsti~l~ 243 (252)
-+|.+++++|++++||++||++|++++|+|+++|+| |.|+.|. |+++|++|||+ +|++++|+
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 468999999999999999999999999999999999 9998886 66999999998 89999986
No 56
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.44 E-value=9e-13 Score=94.03 Aligned_cols=72 Identities=21% Similarity=0.302 Sum_probs=66.7
Q ss_pred ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158 168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~ 243 (252)
..|.|+|+ ...|+.+.++|.+++|++.|+++++++.|+|+++++|+|+|+.|+++.|+++|++++||+|+++
T Consensus 10 ~~i~I~v~----~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~ 81 (87)
T cd01763 10 EHINLKVK----GQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVM 81 (87)
T ss_pred CeEEEEEE----CCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 44666665 4679999999999999999999999999999999999999999999999999999999999986
No 57
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.44 E-value=4.3e-13 Score=89.73 Aligned_cols=64 Identities=33% Similarity=0.562 Sum_probs=59.2
Q ss_pred EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCC
Q 045158 85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFS 149 (252)
Q Consensus 85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s 149 (252)
|+|+|+..++.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|. |+.+|++|++++|+
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~-d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLE-DDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECC-CCCCHHHcCCcCCC
Confidence 57899965578999999999999999999999999999999999999996 88999999999885
No 58
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=3.3e-13 Score=120.18 Aligned_cols=72 Identities=25% Similarity=0.369 Sum_probs=66.7
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhC---CCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFN---IPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP 73 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~---i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~ 73 (252)
|+|+|+. .|+++.|+|++++||.+||.+|+...| +|+++|+|+|+|+.|+|+.+|++|+|.++++ |++++++
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~-Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDF-VVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCE-EEEEecc
Confidence 8999965 999999999999999999999999998 9999999999999999999999999997777 7777654
No 59
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.43 E-value=1.7e-13 Score=93.69 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=47.7
Q ss_pred CCCcHHHHHHHHHHHh--CCC-CCceEEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158 18 LQEPVLEIKRKIEQIF--NIP-ATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI 71 (252)
Q Consensus 18 ~~~tV~~lK~~I~~~~--~i~-~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~ 71 (252)
.++||.+||++|+++. |++ +++|+|+|+|+.|+|+.+|++|||.++++ |||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gst-lhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGST-IHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCE-EEEEe
Confidence 4789999999999995 575 99999999999999999999999998877 88864
No 60
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.40 E-value=6.6e-13 Score=93.99 Aligned_cols=62 Identities=21% Similarity=0.150 Sum_probs=58.8
Q ss_pred EEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 95 KFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 95 ~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
..+++|++++||.+||.+|.+++++|+.+|+|+++|+.|.||.+||++|||..+|+|.|.++
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 45788999999999999999999999999999999999999999999999999999999884
No 61
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=3.7e-12 Score=113.50 Aligned_cols=72 Identities=32% Similarity=0.577 Sum_probs=67.9
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhC---CCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDG---TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT 157 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~ 157 (252)
|+|+|| +.|+++.++|++++||.+||++|++..| +|+++|+|+|+|+.|. |+.+|++|+|+++++|+++++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~-Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILS-DDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEecc
Confidence 689999 6899999999999999999999999998 9999999999999996 8899999999999999999853
No 62
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.31 E-value=5.6e-12 Score=89.32 Aligned_cols=63 Identities=24% Similarity=0.317 Sum_probs=56.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCC-CccccccccCCcEEEEEecC
Q 045158 10 HEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGL-DMEDYPIVKEGTKIDLTINP 73 (252)
Q Consensus 10 ~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~-~L~~~~i~~~~t~i~l~~~~ 73 (252)
...+++|++++||.+||.+|...+++||.+|+|+|+|+.|.|+. ||++||+.+++. |.|.+..
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSv-l~Llide 78 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESV-ILLKADE 78 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCE-EEEEecC
Confidence 35678999999999999999999999999999999999999776 999999997776 7777643
No 63
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.27 E-value=5.2e-12 Score=92.15 Aligned_cols=71 Identities=14% Similarity=0.115 Sum_probs=56.5
Q ss_pred EEEEe-CCeEE-EEEecCCCcHHHHHHHHHHHh-----CCC--CCceEEEEcCeecCCCCCccccc------cccCCcEE
Q 045158 3 IIIVA-NGHEF-VLEVGLQEPVLEIKRKIEQIF-----NIP--ATSQTLAVSGWELVDGLDMEDYP------IVKEGTKI 67 (252)
Q Consensus 3 v~v~~-~g~~~-~l~v~~~~tV~~lK~~I~~~~-----~i~--~~~q~L~~~g~~L~d~~~L~~~~------i~~~~t~i 67 (252)
|.|++ .|..+ ...+++++||++||++|++.. ++| +++|+|||+|+.|+|+.||++|+ +....| +
T Consensus 7 ~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~T-m 85 (113)
T cd01814 7 IKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVIT-M 85 (113)
T ss_pred EEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceE-E
Confidence 34444 56444 567889999999999999444 555 99999999999999999999999 554455 8
Q ss_pred EEEecCC
Q 045158 68 DLTINPF 74 (252)
Q Consensus 68 ~l~~~~~ 74 (252)
|++++++
T Consensus 86 Hvvlr~~ 92 (113)
T cd01814 86 HVVVQPP 92 (113)
T ss_pred EEEecCC
Confidence 9888765
No 64
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.25 E-value=1.2e-11 Score=105.49 Aligned_cols=73 Identities=27% Similarity=0.390 Sum_probs=67.4
Q ss_pred CEEEEE-eCCeEEEEEecCCCcHHHHHHHHHHHhC--CCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIV-ANGHEFVLEVGLQEPVLEIKRKIEQIFN--IPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~-~~g~~~~l~v~~~~tV~~lK~~I~~~~~--i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+ +.+..|++++.|++||.++|.+|+...| .|+++|+|||+|+.|.|+.++.+|++..++. |.++++++
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~f-iVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKF-IVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCce-EEEEEecC
Confidence 899995 5999999999999999999999999999 9999999999999999999999999996666 77777655
No 65
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.23 E-value=4.4e-11 Score=81.03 Aligned_cols=66 Identities=33% Similarity=0.589 Sum_probs=60.7
Q ss_pred EE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 89 IK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 89 v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
|+ .+|+.+.+.+++++||.+||++|++.+|+|+++|+|.|+|+.|. |..+|.+|++.++++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~-d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILK-DDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCC-CcCCHHHCCCCCCCEEEEEE
Confidence 45 35888999999999999999999999999999999999999995 88999999999999999864
No 66
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.20 E-value=1.8e-11 Score=109.67 Aligned_cols=73 Identities=25% Similarity=0.387 Sum_probs=67.0
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
++|+|+..+..+.+.|..+.||.+||+.|+..+++++++++|||+||.|+|+.+|..|||.++.| |||+++..
T Consensus 16 irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~T-vHLVik~~ 88 (493)
T KOG0010|consen 16 IRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHT-VHLVIKSQ 88 (493)
T ss_pred eEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcE-EEEEeccC
Confidence 36778875558999999999999999999999999999999999999999999999999998877 99998754
No 67
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.20 E-value=5e-11 Score=80.73 Aligned_cols=63 Identities=27% Similarity=0.420 Sum_probs=60.1
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~ 243 (252)
.+|+.+.+++.++.||++||++|.+..|+|++.|.|.|+|+.|+|+.+|.+|++.+|++|++.
T Consensus 5 ~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 5 LTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred cCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEE
Confidence 468899999999999999999999999999999999999999999999999999999999986
No 68
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.18 E-value=4.3e-11 Score=87.36 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=60.6
Q ss_pred EEEEEEe-CCc-EEEEeeCCCccHHHHHHHHHHHh-----CCC--CccEEEEECceecccccccccccC------CCCCC
Q 045158 85 IHIIIKF-PSR-KFNIDVDRTDTVRSLKEKIHIID-----GTP--IKRMLLFFSGIELDDEFRNLSEYG------IREFS 149 (252)
Q Consensus 85 ~~i~v~~-~g~-~~~l~v~~~~TV~~lK~~I~~~~-----gip--~~~q~L~~~g~~L~~d~~~L~~y~------i~~~s 149 (252)
+.|.+++ .|. .-+..+.+++||++||++|++.+ |+| +++|+|+|+|+.|+ |+.||++|+ +...+
T Consensus 5 ~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLe-D~~TL~d~~~p~g~~~~~~~ 83 (113)
T cd01814 5 IEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILE-NSKTVGECRSPVGDIAGGVI 83 (113)
T ss_pred EEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecC-CCCcHHHhCCcccccCCCce
Confidence 5566664 453 35778889999999999999555 455 99999999999997 889999999 77789
Q ss_pred EEEEEeeec
Q 045158 150 EIIVFLKTM 158 (252)
Q Consensus 150 ~i~l~~~~~ 158 (252)
|+||+++|.
T Consensus 84 TmHvvlr~~ 92 (113)
T cd01814 84 TMHVVVQPP 92 (113)
T ss_pred EEEEEecCC
Confidence 999999753
No 69
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.15 E-value=8.1e-11 Score=105.53 Aligned_cols=75 Identities=27% Similarity=0.479 Sum_probs=69.7
Q ss_pred CcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeec
Q 045158 83 DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTM 158 (252)
Q Consensus 83 ~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~ 158 (252)
..+.|+||.++..+.+.|..+.||.+||++|..++++|+++++|+|.|+.|. |..+|..|||++|.||||+.|..
T Consensus 14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILK-D~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILK-DDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCcccc-ChhhHHHcCCCCCcEEEEEeccC
Confidence 3478999987779999999999999999999999999999999999999995 99999999999999999999753
No 70
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.14 E-value=4e-10 Score=79.74 Aligned_cols=70 Identities=31% Similarity=0.390 Sum_probs=58.6
Q ss_pred EEEEEeC--CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE-ECce-----ecccccccccccCCCCCCEEEEEe
Q 045158 86 HIIIKFP--SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF-FSGI-----ELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 86 ~i~v~~~--g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~-~~g~-----~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.|+|..+ .......++++.||.+||++++..+|+|++.|+|. |.|. .|.+|..+|++|++++|.+||+.-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 3455533 34456669999999999999999999999999995 7777 576788999999999999999975
No 71
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.06 E-value=8e-10 Score=75.83 Aligned_cols=70 Identities=29% Similarity=0.387 Sum_probs=62.7
Q ss_pred EEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCC-ccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 85 IHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPI-KRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 85 ~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~-~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
|+|.|+. +|+.+.+.+.+++++..|++..+++.|+|+ +..+|+|+|+.|. ++.|+++|++.+|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~-~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLD-PNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE--TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcC-CCCCHHHCCCCCCCEEEEEC
Confidence 5688884 688999999999999999999999999999 9999999999995 88999999999999999863
No 72
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.05 E-value=7.8e-10 Score=75.88 Aligned_cols=69 Identities=26% Similarity=0.274 Sum_probs=61.7
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCC-CceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPA-TSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT 70 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~-~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~ 70 (252)
|+|+|+. +|+.+.+.|.+++++..|+...+++.|+|+ +..+|+|.|+.|+++.|+++|++.++++ |++.
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~-Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDT-IDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEE-EEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCE-EEEE
Confidence 6788865 889999999999999999999999999999 9999999999999999999999997776 7764
No 73
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.98 E-value=1e-09 Score=93.81 Aligned_cols=72 Identities=31% Similarity=0.517 Sum_probs=68.2
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhC--CCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDG--TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT 157 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~ 157 (252)
|.|+|| +.+.+|++++.+++||.++|.+|+...| .|.++|+|+|+|+.|. |..++.+|++.+++-|.++++.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~-D~~tv~Eykv~E~~fiVvMlsK 75 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILK-DETTVGEYKVKEKKFIVVMLSK 75 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceecc-CCcchhhhccccCceEEEEEec
Confidence 679999 7999999999999999999999999998 9999999999999995 9999999999999999999964
No 74
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.97 E-value=2.1e-09 Score=78.21 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=55.6
Q ss_pred CEEEE--EeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccc
Q 045158 1 MRIII--VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIV 61 (252)
Q Consensus 1 M~v~v--~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~ 61 (252)
|-+++ +....++.+++.++.||.+||++|+.....||+.|+|+-.+..|+|++||++||+.
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t 63 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFT 63 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCcc
Confidence 55666 45778899999999999999999999999999999999778899999999999994
No 75
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.94 E-value=5.5e-09 Score=73.88 Aligned_cols=68 Identities=24% Similarity=0.348 Sum_probs=54.9
Q ss_pred EEEEEeC--CeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEE-EcCe-----ec-CCCCCccccccccCCcEEEEE
Q 045158 2 RIIIVAN--GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLA-VSGW-----EL-VDGLDMEDYPIVKEGTKIDLT 70 (252)
Q Consensus 2 ~v~v~~~--g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~-~~g~-----~L-~d~~~L~~~~i~~~~t~i~l~ 70 (252)
.|+|+.+ .......+++++||.+||.+++..+|+|+..|+|. |.|+ .| +|+.+|++||+.++.+ ||+.
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~-IhVv 79 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCR-IHVI 79 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCE-EEEE
Confidence 4566554 44455569999999999999999999999999994 7877 46 5666999999997766 8876
No 76
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.94 E-value=6.7e-09 Score=74.00 Aligned_cols=71 Identities=30% Similarity=0.409 Sum_probs=57.4
Q ss_pred EEEEEEeC---CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEEC-c------eecccccccccccCCCCCCEEEEE
Q 045158 85 IHIIIKFP---SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFS-G------IELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 85 ~~i~v~~~---g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~-g------~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
+.|+|..+ .......++.+.||.+||.+|+..+|+|++.|+|.+. . ..+.+|..+|.+||+.+|.+||+.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 34555532 3478899999999999999999999999999999875 1 246568899999999999999987
Q ss_pred e
Q 045158 155 L 155 (252)
Q Consensus 155 ~ 155 (252)
-
T Consensus 82 D 82 (87)
T PF14560_consen 82 D 82 (87)
T ss_dssp E
T ss_pred e
Confidence 5
No 77
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.87 E-value=2.2e-08 Score=67.94 Aligned_cols=68 Identities=29% Similarity=0.552 Sum_probs=63.2
Q ss_pred EEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 88 IIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 88 ~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
++. ..|+.+.+++.+..+|..+|.+|+...|+|...|++.+.|+.|+ |+.++.+|+|..++++++..+
T Consensus 3 ~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~-d~~~l~~~~i~~~~~~~l~~~ 71 (75)
T KOG0001|consen 3 FVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLE-DGRTLADYNIQEGSTLHLVLS 71 (75)
T ss_pred EEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECc-CCCcHHHhCCCCCCEEEEEEe
Confidence 445 57899999999999999999999999999999999999999997 889999999999999999874
No 78
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.86 E-value=1.5e-08 Score=68.71 Aligned_cols=64 Identities=20% Similarity=0.316 Sum_probs=61.4
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~ 243 (252)
+..|+++.+++...++++.+|.+|....|+|.+.|++.+.|..|+|+.+|.+|+|..++++++.
T Consensus 6 ~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~ 69 (75)
T KOG0001|consen 6 TLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLV 69 (75)
T ss_pred ecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEE
Confidence 4679999999999999999999999999999999999999999999999999999999999985
No 79
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.78 E-value=2.4e-08 Score=71.14 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=51.8
Q ss_pred CceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeec-C------eee-cCCccccccCCCCCCEEEEecC
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHK-Q------RIM-RDNCSLRWHGVEYGDILYVFKG 245 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~-g------~~l-~d~~tL~~y~I~~gsti~l~~~ 245 (252)
.+..+..++.+.||++||.+|+..+|+|++.|+|.+. . ..| +|+.+|.+||+++|++|++...
T Consensus 13 ~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~ 83 (87)
T PF14560_consen 13 QRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVDT 83 (87)
T ss_dssp SSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE-
T ss_pred CeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEeC
Confidence 3577788999999999999999999999999988876 1 234 4678999999999999999754
No 80
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.77 E-value=3.9e-08 Score=71.64 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=60.0
Q ss_pred EEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCC-------CCCCEEEEEee
Q 045158 86 HIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGI-------REFSEIIVFLK 156 (252)
Q Consensus 86 ~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i-------~~~s~i~l~~~ 156 (252)
.+.|+-...++.+++.++.||.+||++|+.....|++.|+|+-.+..| +|++||++||+ +..+++-|.++
T Consensus 4 FlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvL-eD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 4 FLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLL-DDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred EEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceee-cccccHHHcCccccccccCCCCeEEEEEe
Confidence 344444566788999999999999999999999999999999666778 49999999999 77888888884
No 81
>PLN02560 enoyl-CoA reductase
Probab=98.68 E-value=5.4e-08 Score=84.88 Aligned_cols=65 Identities=29% Similarity=0.417 Sum_probs=57.0
Q ss_pred CEEEEEe-CCeEE---EEEecCCCcHHHHHHHHHHHhCC-CCCceEEEEc---C----eecCCCCCccccccccCCc
Q 045158 1 MRIIIVA-NGHEF---VLEVGLQEPVLEIKRKIEQIFNI-PATSQTLAVS---G----WELVDGLDMEDYPIVKEGT 65 (252)
Q Consensus 1 M~v~v~~-~g~~~---~l~v~~~~tV~~lK~~I~~~~~i-~~~~q~L~~~---g----~~L~d~~~L~~~~i~~~~t 65 (252)
|+|.|+. +|+.+ ++++++++||+|||.+|+++.++ ++++|+|.+. | ..|+|+.+|++||+.++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gst 77 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGT 77 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCce
Confidence 8999966 68887 79999999999999999999986 8999999983 3 3789999999999986665
No 82
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.66 E-value=2.7e-07 Score=68.50 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=53.2
Q ss_pred EEEEe-CCe-EEEEEecCCCcHHHHHHHHHHHhC-------CCCCceEEEEcCeecCCCCCccccccccCC-----cEEE
Q 045158 3 IIIVA-NGH-EFVLEVGLQEPVLEIKRKIEQIFN-------IPATSQTLAVSGWELVDGLDMEDYPIVKEG-----TKID 68 (252)
Q Consensus 3 v~v~~-~g~-~~~l~v~~~~tV~~lK~~I~~~~~-------i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~-----t~i~ 68 (252)
+.+.+ +|. +-.+..++++||++||+.|...+- ..++..||+|.|+.|+|+.+|+++.+..+. +++|
T Consensus 5 lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vmH 84 (111)
T PF13881_consen 5 LKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVMH 84 (111)
T ss_dssp EEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEEE
T ss_pred EEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEEE
Confidence 33434 888 788999999999999999997652 245678999999999999999999987544 4688
Q ss_pred EEecCCC
Q 045158 69 LTINPFL 75 (252)
Q Consensus 69 l~~~~~~ 75 (252)
|++++..
T Consensus 85 lvvrp~~ 91 (111)
T PF13881_consen 85 LVVRPNA 91 (111)
T ss_dssp EEE-SSS
T ss_pred EEecCCC
Confidence 8886553
No 83
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.64 E-value=1.8e-07 Score=62.77 Aligned_cols=68 Identities=26% Similarity=0.375 Sum_probs=57.5
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEc---C--eecCCCCCccccccccCCcEEEEE
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVS---G--WELVDGLDMEDYPIVKEGTKIDLT 70 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~---g--~~L~d~~~L~~~~i~~~~t~i~l~ 70 (252)
.+|+|+. +...+++.|+|..+|..+|++|....|++- .|||.|. | +.|.+..+|++|||..+ +.|.|.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~-~~i~ll 74 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSK-TNICLL 74 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceec-cEEEEE
Confidence 4788966 788899999999999999999999999996 8999995 3 46899999999999944 435443
No 84
>PLN02560 enoyl-CoA reductase
Probab=98.60 E-value=1.4e-07 Score=82.28 Aligned_cols=69 Identities=23% Similarity=0.388 Sum_probs=58.6
Q ss_pred EEEEEE-eCCcEE---EEeeCCCccHHHHHHHHHHHhCC-CCccEEEEEC---c----eecccccccccccCCCCCCEEE
Q 045158 85 IHIIIK-FPSRKF---NIDVDRTDTVRSLKEKIHIIDGT-PIKRMLLFFS---G----IELDDEFRNLSEYGIREFSEII 152 (252)
Q Consensus 85 ~~i~v~-~~g~~~---~l~v~~~~TV~~lK~~I~~~~gi-p~~~q~L~~~---g----~~L~~d~~~L~~y~i~~~s~i~ 152 (252)
|.|.|+ .+|+.+ ++++++++||++||.+|+++.++ ++++|+|.+. | ..|. |+.+|++||+++|++|+
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~-d~ktL~d~gv~~gstLy 79 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLD-DSKSLKDYGLGDGGTVV 79 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccC-CCCCHHhcCCCCCceEE
Confidence 567788 467776 79999999999999999999986 8999999973 3 3775 88999999999999987
Q ss_pred EE
Q 045158 153 VF 154 (252)
Q Consensus 153 l~ 154 (252)
+-
T Consensus 80 ~k 81 (308)
T PLN02560 80 FK 81 (308)
T ss_pred EE
Confidence 64
No 85
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.55 E-value=4.2e-07 Score=60.99 Aligned_cols=70 Identities=23% Similarity=0.316 Sum_probs=58.7
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEEC---c-eecccccccccccCCCCCCEEEEEe
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFS---G-IELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~---g-~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
+++.|+ +....+.+.|+|..+|..+|++|....|++- .|+|.|. | +.|..+..+|++|||..+..|.|+-
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 368888 5666799999999999999999999999985 9999982 2 3333599999999999988888765
No 86
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.52 E-value=1e-06 Score=65.36 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=54.7
Q ss_pred EEEEEEe-CCc-EEEEeeCCCccHHHHHHHHHHHh--CC-----CCccEEEEECceecccccccccccCCCCCC------
Q 045158 85 IHIIIKF-PSR-KFNIDVDRTDTVRSLKEKIHIID--GT-----PIKRMLLFFSGIELDDEFRNLSEYGIREFS------ 149 (252)
Q Consensus 85 ~~i~v~~-~g~-~~~l~v~~~~TV~~lK~~I~~~~--gi-----p~~~q~L~~~g~~L~~d~~~L~~y~i~~~s------ 149 (252)
+.+.+++ +|. ..++.+++++||++||+.|...+ +. .++..+|++.|+.|+ |+.+|+++++..|.
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~-d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILE-DNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE--SSSBTGGGT--TTSETT--E
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecC-CcCcHHHhCCCCCCCCCCCE
Confidence 4455553 787 78899999999999999999866 21 367899999999996 99999999998766
Q ss_pred EEEEEeeec
Q 045158 150 EIIVFLKTM 158 (252)
Q Consensus 150 ~i~l~~~~~ 158 (252)
++||+++|.
T Consensus 82 vmHlvvrp~ 90 (111)
T PF13881_consen 82 VMHLVVRPN 90 (111)
T ss_dssp EEEEEE-SS
T ss_pred EEEEEecCC
Confidence 678888654
No 87
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.42 E-value=7.4e-07 Score=61.90 Aligned_cols=52 Identities=21% Similarity=0.219 Sum_probs=46.1
Q ss_pred CCCccHHHHHHHHHHHhC-CCCccEEEE--ECceecccccccccccCCCCCCEEEE
Q 045158 101 DRTDTVRSLKEKIHIIDG-TPIKRMLLF--FSGIELDDEFRNLSEYGIREFSEIIV 153 (252)
Q Consensus 101 ~~~~TV~~lK~~I~~~~g-ip~~~q~L~--~~g~~L~~d~~~L~~y~i~~~s~i~l 153 (252)
.++.||.+||..|++..+ +|+++|+|. +.|+.|. |+.+|.+||+.+|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~-d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLK-DDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccC-CcccHhhcCCCCCCEEEE
Confidence 478999999999999875 589999986 7899995 888999999999999875
No 88
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=5.5e-07 Score=87.21 Aligned_cols=71 Identities=18% Similarity=0.336 Sum_probs=66.4
Q ss_pred EEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeec
Q 045158 86 HIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTM 158 (252)
Q Consensus 86 ~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~ 158 (252)
.+.|| ++.++.++.+...+||.+||..|.+...|+.+.|+|+|.|+.|. |.+++.+|+| +|-+|||+-+|.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~-~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQ-DDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeec-cchhhhhccC-CCeEEEeeccCC
Confidence 47888 68899999999999999999999999999999999999999997 8899999999 999999999754
No 89
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=5.2e-07 Score=87.35 Aligned_cols=65 Identities=17% Similarity=0.301 Sum_probs=62.6
Q ss_pred eccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158 179 SLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 179 ~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
|++..++.++.|...+||.++|+.|.++.+||-+.|+++|.||+|.|++++.+|+| +|-+|+|+.
T Consensus 8 ktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlve 72 (1143)
T KOG4248|consen 8 KTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVE 72 (1143)
T ss_pred eecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeec
Confidence 47889999999999999999999999999999999999999999999999999999 999999984
No 90
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.35 E-value=1.4e-06 Score=60.91 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=42.2
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEc---Ceec--CCCCCccccccccCCcEEEE
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVS---GWEL--VDGLDMEDYPIVKEGTKIDL 69 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~---g~~L--~d~~~L~~~~i~~~~t~i~l 69 (252)
|-|.|......+.+++++++|+.+|+++|++.+++|.+.|.|+.+ ...+ .++.+|+++||++++. +.|
T Consensus 5 milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdm-lyL 77 (80)
T PF11543_consen 5 MILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDM-LYL 77 (80)
T ss_dssp -EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-E-EE-
T ss_pred EEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccE-EEE
Confidence 456666677889999999999999999999999999999988643 2345 4567999999997765 544
No 91
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.34 E-value=9.6e-07 Score=61.33 Aligned_cols=52 Identities=27% Similarity=0.366 Sum_probs=46.3
Q ss_pred cCCCcHHHHHHHHhhcCC-CCCCceEEe--ecCeeecCCccccccCCCCCCEEEE
Q 045158 191 QDSSTVNELRHLLLSSKI-LPREDYIFI--HKQRIMRDNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 191 ~~~~tV~~Lk~~i~~~~g-ip~~~~~l~--~~g~~l~d~~tL~~y~I~~gsti~l 242 (252)
.++.||++||+.|.+..+ +|++.|+|. +.|+.|.|+.+|.+|||++|++||+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 467899999999988865 688998885 8999999999999999999999986
No 92
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.32 E-value=1.3e-06 Score=60.95 Aligned_cols=72 Identities=21% Similarity=0.205 Sum_probs=44.1
Q ss_pred CcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc---eec-ccccccccccCCCCCCEEEEE
Q 045158 83 DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG---IEL-DDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 83 ~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g---~~L-~~d~~~L~~y~i~~~s~i~l~ 154 (252)
..|-|.|+.+.-...+++++++|+.+|+++|++..++|...|.|..+. .++ .+++.+|+++||+.|+.|.|.
T Consensus 3 ~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 356777777666788899999999999999999999999999886422 244 247789999999999998763
No 93
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.29 E-value=2.8e-06 Score=54.97 Aligned_cols=63 Identities=25% Similarity=0.383 Sum_probs=58.2
Q ss_pred CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158 182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
.|....+.+.+..|++++++.|.++.|++++.+.|.++|..+++...+.+|++.++++|++..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 477888888899999999999999999999999999999999999988999999999999864
No 94
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.19 E-value=9.6e-06 Score=52.34 Aligned_cols=63 Identities=25% Similarity=0.372 Sum_probs=56.8
Q ss_pred CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 92 PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 92 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.+....+.+.+..|+.+||++|.++.|+++..+.|.++|..+. +...+.+|++.++++|++..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILP-DSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEe
Confidence 4677888899999999999999999999999999999999996 77777899999999999863
No 95
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=7.4e-06 Score=70.00 Aligned_cols=69 Identities=14% Similarity=0.340 Sum_probs=59.8
Q ss_pred CEEEEEe----CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158 1 MRIIIVA----NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT 70 (252)
Q Consensus 1 M~v~v~~----~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~ 70 (252)
|.+.|.+ ....++++|+.+.+|.+||+.++.+.|+|+++-+++|+|+.|+++.++..+.+...+. +|.+
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~-~hi~ 73 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSA-THIM 73 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccch-hhhh
Confidence 6667755 3455789999999999999999999999999999999999999999999888876666 6665
No 96
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=9.3e-06 Score=73.00 Aligned_cols=72 Identities=15% Similarity=0.312 Sum_probs=66.2
Q ss_pred EEEEEEeCCcEEEEe-eCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158 85 IHIIIKFPSRKFNID-VDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT 157 (252)
Q Consensus 85 ~~i~v~~~g~~~~l~-v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~ 157 (252)
..|.|++.|+.+.++ ++.++|+..||+++...+|+||++|+++..|..+. |+-.+....|+++.+++|+-..
T Consensus 4 ~~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~-dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 4 DTVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAK-DDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred ceEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccc-ccccccccccCCCCEEEeeccc
Confidence 458889999999998 99999999999999999999999999999999996 7678899999999999998753
No 97
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=9.6e-06 Score=69.30 Aligned_cols=72 Identities=19% Similarity=0.428 Sum_probs=62.2
Q ss_pred EEEEEEeC--C--cEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE-eee
Q 045158 85 IHIIIKFP--S--RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF-LKT 157 (252)
Q Consensus 85 ~~i~v~~~--g--~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~-~~~ 157 (252)
|.++|.+. | ..++++|+.+.+|.+||+.++.+.|+|+++.+++|.|++|. |+.++..+.+..-|.+|++ ++|
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs-~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELS-NDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccc-cCceeecccccccchhhhhccCc
Confidence 34566653 2 34889999999999999999999999999999999999997 8899999999999999988 444
No 98
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=98.00 E-value=1.1e-05 Score=56.81 Aligned_cols=62 Identities=24% Similarity=0.330 Sum_probs=53.6
Q ss_pred CEEEE--EeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEE-c-CeecCCCCCcccccccc
Q 045158 1 MRIII--VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAV-S-GWELVDGLDMEDYPIVK 62 (252)
Q Consensus 1 M~v~v--~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~-~-g~~L~d~~~L~~~~i~~ 62 (252)
|.+++ +....++.+++.++.||-+||.+++....-|++.|+|+. . .+.|+|..+|+++|...
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTS 66 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccc
Confidence 44555 557788999999999999999999999999999999997 3 36899999999998863
No 99
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.5e-05 Score=71.71 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=65.4
Q ss_pred EEEEeCCeEEEEE-ecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 3 IIIVANGHEFVLE-VGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 3 v~v~~~g~~~~l~-v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|.|+..|+.+.++ ++.++|+..+|+++...+|+||++|++.+.|..+.|+-.+...+|+++.+ ++++.++.
T Consensus 6 v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~-lmMmGt~e 77 (473)
T KOG1872|consen 6 VIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNET-LMMMGTAE 77 (473)
T ss_pred EeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCE-EEeecccc
Confidence 6678899999998 99999999999999999999999999999999999999999999997777 88887655
No 100
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3.9e-06 Score=54.66 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=54.6
Q ss_pred eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEE
Q 045158 7 ANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDL 69 (252)
Q Consensus 7 ~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l 69 (252)
+-|+...+.++++|||+|+|..|+.+.|-.++...|--++..+.|+-+|++|.|.++-. +.|
T Consensus 9 rLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~-lel 70 (73)
T KOG3493|consen 9 RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMN-LEL 70 (73)
T ss_pred hcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCcc-EEE
Confidence 36899999999999999999999999999999988888888999999999999984433 544
No 101
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.80 E-value=4.3e-05 Score=53.91 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=49.9
Q ss_pred EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE-Cc-eecccccccccccCC
Q 045158 85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF-SG-IELDDEFRNLSEYGI 145 (252)
Q Consensus 85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~-~g-~~L~~d~~~L~~y~i 145 (252)
|.+.|+-...++.++.+++.||.+||++++....-|++.|+|+. .. ..| +|+.+|+++|.
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL-~D~ktL~d~gf 64 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLL-DDGKTLGDCGF 64 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHh-hccchhhhccc
Confidence 34555555667889999999999999999999999999999987 33 355 69999999965
No 102
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=1.8e-05 Score=51.57 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=56.3
Q ss_pred EEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158 86 HIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 86 ~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
++.++ .-|+...+...+++||.++|..|+.++|..++...|---+..+ +|+-+|++|.|.+|-.+.|-
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~-kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIF-KDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhh-hcccceeeEEeccCccEEEe
Confidence 34444 3478888999999999999999999999999988776555567 59999999999999887764
No 103
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.64 E-value=0.0002 Score=47.77 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=47.5
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEE
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l 242 (252)
.++++..+.|.++.++.++-++.++++|+..+.+.|.|+++.++-+-+++--|+.+|+++.|
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 56899999999999999999999999999999999999999999999999999999999876
No 104
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.54 E-value=0.0004 Score=48.34 Aligned_cols=60 Identities=25% Similarity=0.364 Sum_probs=45.7
Q ss_pred CceEEEEecCCCcHHHHHHHHhhcCCCCCC------ceEEe-ecCeeecCCccccccCCCCCCEEEE
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSSKILPRE------DYIFI-HKQRIMRDNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~------~~~l~-~~g~~l~d~~tL~~y~I~~gsti~l 242 (252)
|+.+-+.++..-+|++|...|.+..+.+.. .+.|. -+|..|.++.||++|||.+||.++|
T Consensus 12 ~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 12 GRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp --EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 588889999999999999999998776432 36777 6889999999999999999999987
No 105
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.47 E-value=0.00059 Score=45.51 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=46.0
Q ss_pred eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEE
Q 045158 91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIV 153 (252)
Q Consensus 91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l 153 (252)
.+++...+.+.++.|+.++-+...+++|+.++...|.++++.| |-+.++.-.|+.+|+.+.|
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~l-dlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPL-DLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEE-SSS-BHHHH---SS-EEEE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEe-ccccceeecCCCCCCEEeC
Confidence 4678899999999999999999999999999999999999999 5889999999999998865
No 106
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0013 Score=47.03 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=64.2
Q ss_pred CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCCC
Q 045158 182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGGY 252 (252)
Q Consensus 182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~~ 252 (252)
.+....+.|..+.+...|++.-+++.|++.+..+|.|+|+.+.+.+|=++.+.++||.|.++---+.|.||
T Consensus 29 d~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~~~ 99 (99)
T KOG1769|consen 29 DGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGFGT 99 (99)
T ss_pred CCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCCCC
Confidence 46777889999999999999999999999999999999999999999999999999999998766666554
No 107
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0057 Score=43.84 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=62.1
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
+.+.|+ ..+....+.|..+.+...|+..-+++.|++.+..+..|+|+.+. +..|=++.+..+|+.|.+..
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~-~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIR-ETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcC-CCCChhhhCCcCCcEEEEEe
Confidence 344444 35677889999999999999999999999999999999999995 88999999999999999886
No 108
>COG5417 Uncharacterized small protein [Function unknown]
Probab=97.15 E-value=0.0038 Score=42.12 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=53.2
Q ss_pred eccCCceEEEEecCCCcHHHHHHHHhhcCC--CC-CC--ceEEeecCeeecCCccccccCCCCCCEEEE
Q 045158 179 SLLNGASIPLEMQDSSTVNELRHLLLSSKI--LP-RE--DYIFIHKQRIMRDNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 179 ~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~g--ip-~~--~~~l~~~g~~l~d~~tL~~y~I~~gsti~l 242 (252)
..++|+++-+.++...++..|-..+-+... ++ .+ ..+..-+++.|-+++.|.+|+|.+||.+.+
T Consensus 12 t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 12 TNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 457899999999999999988888766543 33 23 357788999999999999999999999876
No 109
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.99 E-value=0.0022 Score=44.59 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=48.1
Q ss_pred EEEEEEeC-CcEEEEeeCCCccHHHHHHHHHHHhCCCCc------cEEEE-ECceecccccccccccCCCCCCEEEE
Q 045158 85 IHIIIKFP-SRKFNIDVDRTDTVRSLKEKIHIIDGTPIK------RMLLF-FSGIELDDEFRNLSEYGIREFSEIIV 153 (252)
Q Consensus 85 ~~i~v~~~-g~~~~l~v~~~~TV~~lK~~I~~~~gip~~------~q~L~-~~g~~L~~d~~~L~~y~i~~~s~i~l 153 (252)
++|.|.+. |+.+.+.+..+.+|++|...|.+..+.+.. ...|. -+|..|. ++.+|+++||.+|+.+.|
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~-~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLD-PDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEE-TTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccC-CcCcHhHcCCCCCCEEEe
Confidence 45667765 588999999999999999999998876432 23455 5788995 899999999999999986
No 110
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.96 E-value=0.0022 Score=46.43 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=43.2
Q ss_pred EEEEe--CCeEEEEEec--CCCcHHHHHHHHHHHhC--CCCCceEEEEcCeecCCCCCcccc
Q 045158 3 IIIVA--NGHEFVLEVG--LQEPVLEIKRKIEQIFN--IPATSQTLAVSGWELVDGLDMEDY 58 (252)
Q Consensus 3 v~v~~--~g~~~~l~v~--~~~tV~~lK~~I~~~~~--i~~~~q~L~~~g~~L~d~~~L~~~ 58 (252)
|.|.+ +-..+.+++. .+.||..||..|.+... ..-..+||+|+|+.|.|+..|+.-
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 44555 3344677777 88999999999999983 344568999999999999877654
No 111
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.88 E-value=0.0072 Score=47.52 Aligned_cols=76 Identities=22% Similarity=0.235 Sum_probs=54.5
Q ss_pred EEEEEE-eCC----cEEEEeeCCCccHHHHHHHHHHHhCCCCccE-EEEE-Cceec-ccccccccccCCCCC----CEEE
Q 045158 85 IHIIIK-FPS----RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRM-LLFF-SGIEL-DDEFRNLSEYGIREF----SEII 152 (252)
Q Consensus 85 ~~i~v~-~~g----~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q-~L~~-~g~~L-~~d~~~L~~y~i~~~----s~i~ 152 (252)
|+|+|. ++| .++.+.+..+.||.+|+..|.+..++|...| .|.+ .+..| ..+...++.+.-... .+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 578899 688 5788999999999999999999999998885 4554 34454 235556666654333 2455
Q ss_pred EEeeeccccCCC
Q 045158 153 VFLKTMNRLRDN 164 (252)
Q Consensus 153 l~~~~~~~~~~~ 164 (252)
|.+ |++||
T Consensus 81 l~~----rl~GG 88 (162)
T PF13019_consen 81 LSL----RLRGG 88 (162)
T ss_pred EEE----eccCC
Confidence 555 67765
No 112
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.81 E-value=0.0037 Score=45.21 Aligned_cols=57 Identities=26% Similarity=0.362 Sum_probs=41.9
Q ss_pred EEEEeCC--cEEEEeeC--CCccHHHHHHHHHHHhC--CCCccEEEEECceecccccccccccC
Q 045158 87 IIIKFPS--RKFNIDVD--RTDTVRSLKEKIHIIDG--TPIKRMLLFFSGIELDDEFRNLSEYG 144 (252)
Q Consensus 87 i~v~~~g--~~~~l~v~--~~~TV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~~d~~~L~~y~ 144 (252)
|.|+|+. .-..+++. .+.||..||++|.+..+ ..-.+++|+|+|+.|. |+..|+..-
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~-d~t~l~~~l 65 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLN-DHTDLSSEL 65 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccC-ccchhhhhh
Confidence 5566532 22556666 78999999999999883 4455788999999996 877666543
No 113
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.76 E-value=0.02 Score=39.86 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=59.0
Q ss_pred CcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCcc-EEEE--ECceeccccc-ccccccCCCCCCEEEEE
Q 045158 83 DKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKR-MLLF--FSGIELDDEF-RNLSEYGIREFSEIIVF 154 (252)
Q Consensus 83 ~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~-q~L~--~~g~~L~~d~-~~L~~y~i~~~s~i~l~ 154 (252)
....|-|++ +|+.+.-.+..++||.+|..-|......+... ..|. |-.+.+.++. .+|.+.|+.+.++|++.
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 456888996 58889999999999999999999888776664 6675 5677886444 79999999999999874
No 114
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=96.72 E-value=0.031 Score=46.42 Aligned_cols=109 Identities=14% Similarity=0.115 Sum_probs=60.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhCCCCC---ceEEE--EcCe---ecCCCCCccccccccCCcEEEEEecCCCCccCC-
Q 045158 10 HEFVLEVGLQEPVLEIKRKIEQIFNIPAT---SQTLA--VSGW---ELVDGLDMEDYPIVKEGTKIDLTINPFLQSSFN- 80 (252)
Q Consensus 10 ~~~~l~v~~~~tV~~lK~~I~~~~~i~~~---~q~L~--~~g~---~L~d~~~L~~~~i~~~~t~i~l~~~~~~~~~~~- 80 (252)
+.+.+-|+.+.||.||-.+++.+.+++.. ..+|+ ++++ .+..+.++.+. . +...+.+-.-|.......
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~-~~~~~r~E~ip~ee~~~~~ 110 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--N-DYITLRIEEIPEEELNLDD 110 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS-----TTEEEEEE--GGGSS--T
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--c-CcceeeeecCChHHhhccc
Confidence 35788999999999999999999999765 33433 4555 47777777777 2 222244443333322222
Q ss_pred -cCCcEEEEEE-eC-------CcEEEEeeCCCccHHHHHHHHHHHhCCCC
Q 045158 81 -QHDKIHIIIK-FP-------SRKFNIDVDRTDTVRSLKEKIHIIDGTPI 121 (252)
Q Consensus 81 -~~~~~~i~v~-~~-------g~~~~l~v~~~~TV~~lK~~I~~~~gip~ 121 (252)
..+.+.|.|- +. |-.|.+.|.+.+|..++|++|++++|+|-
T Consensus 111 ~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 111 ESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp T--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred ccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 1234566666 42 45578899999999999999999999973
No 115
>PRK06437 hypothetical protein; Provisional
Probab=96.62 E-value=0.013 Score=39.30 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=49.0
Q ss_pred CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
+++..+++++...||++|-+++ |++++...+..+|+... .++-+++||+|.++ +..+||
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv--~~V~GG 67 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLIL--EVFSGG 67 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CceEcCCCCEEEEE--ecccCC
Confidence 3567778888888999888776 88888888889998886 77788999999998 677776
No 116
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.0023 Score=51.93 Aligned_cols=58 Identities=31% Similarity=0.332 Sum_probs=54.1
Q ss_pred eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCC
Q 045158 7 ANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEG 64 (252)
Q Consensus 7 ~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~ 64 (252)
.+++.+.+.+...+|+.++|.++..+.|+.+..|+++|+|..|-|...|..++|.++.
T Consensus 154 tT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~ 211 (231)
T KOG0013|consen 154 TTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQ 211 (231)
T ss_pred hhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCC
Confidence 3678899999999999999999999999999999999999999999999999999553
No 117
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.33 E-value=0.026 Score=39.21 Aligned_cols=63 Identities=24% Similarity=0.348 Sum_probs=51.9
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCc-eEEe--ecCeeecCC--ccccccCCCCCCEEEE
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPRED-YIFI--HKQRIMRDN--CSLRWHGVEYGDILYV 242 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~--~~g~~l~d~--~tL~~y~I~~gsti~l 242 (252)
...|+++.-.-..++|+.+|..-|......+... +.|. |..+.+.++ .||++.|+.+.++|++
T Consensus 13 lpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 13 LPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp ETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 4678888888899999999999998887666654 7665 566777765 5999999999999987
No 118
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.30 E-value=0.037 Score=38.41 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=56.0
Q ss_pred cEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceecccc--cccccccCCCCCCEEEEE
Q 045158 84 KIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELDDE--FRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 84 ~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~~d--~~~L~~y~i~~~s~i~l~ 154 (252)
...|-|++ +|+.+.-.+..++|+.+|.+-|....+.+.....|. |..+.+.++ +.+|.+.|+.+.+++.+.
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence 45788886 588899999999999999999977666666666765 566777533 579999999988888763
No 119
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.13 E-value=0.05 Score=37.76 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=53.4
Q ss_pred cEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCC-CccEEEE--ECceecccccccccccCCCCCCEE
Q 045158 84 KIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTP-IKRMLLF--FSGIELDDEFRNLSEYGIREFSEI 151 (252)
Q Consensus 84 ~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip-~~~q~L~--~~g~~L~~d~~~L~~y~i~~~s~i 151 (252)
...|-|++ +|+.+...++.++||.+|.+-|....+-+ .....|. |-.+.|.+++.||.+.|+.+.+.+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 35788896 68889999999999999999999876432 3455665 778888767889999999875443
No 120
>COG5417 Uncharacterized small protein [Function unknown]
Probab=95.92 E-value=0.054 Score=36.63 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=53.5
Q ss_pred CEEEEE---eCCeEEEEEecCCCcHHHHHHHHHHHhCCC-----CCceEEEEcCeecCCCCCccccccccCCc
Q 045158 1 MRIIIV---ANGHEFVLEVGLQEPVLEIKRKIEQIFNIP-----ATSQTLAVSGWELVDGLDMEDYPIVKEGT 65 (252)
Q Consensus 1 M~v~v~---~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~-----~~~q~L~~~g~~L~d~~~L~~~~i~~~~t 65 (252)
|+|+|- .+|.++.+.++...+|..|-..+++...++ -++.+..=.++.|.++..|.+|+|.+++.
T Consensus 5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~ 77 (81)
T COG5417 5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDI 77 (81)
T ss_pred EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCE
Confidence 456663 289999999999999999999998887653 25567788899999999999999996554
No 121
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=95.77 E-value=0.1 Score=35.27 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=44.4
Q ss_pred eEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 185 SIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 185 ~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
...++++...||++|-+.+ +++.....+..+|+... .++-+++||.|.++ +..+||
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii--~~V~GG 70 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVI--PVVSGG 70 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEE--ccccCC
Confidence 5667778888999998877 77777788888998774 47779999999998 566665
No 122
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=95.66 E-value=0.099 Score=36.21 Aligned_cols=63 Identities=11% Similarity=0.135 Sum_probs=50.7
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeeecC---CccccccCCCCCCEEEE
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIMRD---NCSLRWHGVEYGDILYV 242 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l~d---~~tL~~y~I~~gsti~l 242 (252)
..+|+++.-.-..++|+++|.+.+....+.+...+.|. |..+.+.+ +.||.+.|+-+.+++.+
T Consensus 11 lPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 11 LPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 46788888888999999999999977666666667665 55566764 47999999999999876
No 123
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=95.57 E-value=0.086 Score=34.97 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=45.3
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
++|+.+.+ + ..|+.+|.+.+ +++........+++... .....+.-+++||.|.++ +..+||
T Consensus 5 ~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv--~~V~GG 65 (65)
T PRK06488 5 VNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEIL--SPMQGG 65 (65)
T ss_pred ECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEE--EeccCC
Confidence 45877776 3 35899888776 66666667788886655 456677889999999998 666666
No 124
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.056 Score=43.98 Aligned_cols=61 Identities=23% Similarity=0.314 Sum_probs=51.6
Q ss_pred EEEeeCCCccHHHHHHHHHHHhCCCCccEEEE-ECc-----eecccccccccccCCCCCCEEEEEee
Q 045158 96 FNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF-FSG-----IELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 96 ~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~-~~g-----~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
.....+++.||++||.+++-..|.+++.+.|. |.| ..|.+++..|.+|...+|-.||++-.
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 44556789999999999999999999999876 444 36766788999999999999999863
No 125
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=95.46 E-value=0.19 Score=41.74 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=60.9
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHhCCCCc---cEEEE--ECce---ecccccccccccCCCCCCEEEEEeeeccccCCC-
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIIDGTPIK---RMLLF--FSGI---ELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDN- 164 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~gip~~---~q~L~--~~g~---~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~~- 164 (252)
+.+.+-|+.+.||.+|...++.+.+++.+ ..+|. ++++ .+. .+.++... .+...+.+..-|.....-.
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~-~d~~i~~l--~~~~~~r~E~ip~ee~~~~~ 110 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILS-EDEPISSL--NDYITLRIEEIPEEELNLDD 110 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE--TTSBGGGS----TTEEEEEE--GGGSS--T
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecC-CCCchhhc--cCcceeeeecCChHHhhccc
Confidence 45889999999999999999999998765 33333 4555 453 55667766 4444566654332111111
Q ss_pred CccccceeeEEeeeecc---CCceEEEEecCCCcHHHHHHHHhhcCCCCCC
Q 045158 165 PPIRRLSFKVQTSSSLL---NGASIPLEMQDSSTVNELRHLLLSSKILPRE 212 (252)
Q Consensus 165 ~~~~~~~i~v~~~~~~~---~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~ 212 (252)
......-|.|..+.+.. .|--+.+.|.+.++..++|+.|+++.|+|-.
T Consensus 111 ~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 111 ESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp T--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred ccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 00012333443343322 3555668899999999999999999999963
No 126
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.24 E-value=0.21 Score=34.25 Aligned_cols=67 Identities=15% Similarity=0.240 Sum_probs=50.2
Q ss_pred EEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceeccc--ccccccccCCCCCCEEEE
Q 045158 85 IHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELDD--EFRNLSEYGIREFSEIIV 153 (252)
Q Consensus 85 ~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~~--d~~~L~~y~i~~~s~i~l 153 (252)
..|.|++ +|+.+.-.+..++||.+|.+-|.....- .....|. |-.+.+.+ ++.+|.+.|+.+ +++.+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 4678886 6888889999999999999999876543 3445555 56677753 578999999995 44443
No 127
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=95.20 E-value=0.035 Score=46.46 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=49.5
Q ss_pred CEEEEEe--CCeEEE-EEecCCCcHHHHHHHH-HHHhCCCCCceEEEE----cCeecCCCCCccccccccCCc
Q 045158 1 MRIIIVA--NGHEFV-LEVGLQEPVLEIKRKI-EQIFNIPATSQTLAV----SGWELVDGLDMEDYPIVKEGT 65 (252)
Q Consensus 1 M~v~v~~--~g~~~~-l~v~~~~tV~~lK~~I-~~~~~i~~~~q~L~~----~g~~L~d~~~L~~~~i~~~~t 65 (252)
|.|++.. .|...+ .+.+.+.|+.|++..+ ++...+.+..+|+.+ +|++|-|+.+|++|+..++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~ 73 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGAT 73 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCE
Confidence 7888955 334555 6788999999998655 555678886666554 599999999999999986644
No 128
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.96 E-value=0.24 Score=34.83 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=49.1
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecC--eeec--------CCccccccCCCCCCEEEE
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ--RIMR--------DNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g--~~l~--------d~~tL~~y~I~~gsti~l 242 (252)
..+|.++.-.-..++|+++|..-|... +-.++.|.|+.+- +++. .+.||.+-|+.+..++++
T Consensus 11 lp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 11 LPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 467888888888899999999999654 4455778777544 7775 367999999999998876
No 129
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=0.049 Score=44.40 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=55.5
Q ss_pred CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEE
Q 045158 92 PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIV 153 (252)
Q Consensus 92 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l 153 (252)
+++.+.+.+...+||.++|.+++...|+.+.-|+++|+|..|- |...|..++|..|+.-.+
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~-dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLV-DKTDLEECKIEKGQRYVL 215 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCcee-ccccceeeeecCCCEEEE
Confidence 4677999999999999999999999999999999999999996 999999999999965444
No 130
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=94.86 E-value=0.14 Score=35.50 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=38.3
Q ss_pred EEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCee
Q 045158 4 IIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWE 48 (252)
Q Consensus 4 ~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~ 48 (252)
.|.+.+ ++.+.+.++.+..+|..+|.++.++|++...|.|....
T Consensus 6 KV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 6 KVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 344555 99999999999999999999999999999999997653
No 131
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.76 E-value=0.29 Score=33.88 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=52.8
Q ss_pred EEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceeccc--ccccccccCCCCCCEEEE
Q 045158 85 IHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELDD--EFRNLSEYGIREFSEIIV 153 (252)
Q Consensus 85 ~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~~--d~~~L~~y~i~~~s~i~l 153 (252)
..|.|++ +|+.+.-.+..++|+++|.+-|....+-+ ....|+ |-.+.+.+ .+.+|.+.|+.+.++|.|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4678885 68888889999999999999999766543 444555 67777742 257999999999988876
No 132
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.73 E-value=0.34 Score=33.47 Aligned_cols=62 Identities=13% Similarity=0.262 Sum_probs=48.3
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeeecC---CccccccCCCCCCEEEE
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIMRD---NCSLRWHGVEYGDILYV 242 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l~d---~~tL~~y~I~~gsti~l 242 (252)
..+|.++.-.-..++|+++|++-+....+-+ ..+.|+ |..+.+.+ +.||.+.|+.+..+|++
T Consensus 11 lp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 11 LLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred CCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4578888888888999999999998665433 446555 55677753 47999999999999987
No 133
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.64 E-value=0.27 Score=34.06 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=48.4
Q ss_pred EEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCC-CCceEEE--EcCeecCCC-CCccccccccCCc
Q 045158 2 RIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIP-ATSQTLA--VSGWELVDG-LDMEDYPIVKEGT 65 (252)
Q Consensus 2 ~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~-~~~q~L~--~~g~~L~d~-~~L~~~~i~~~~t 65 (252)
+|.|++ +|+.+....+.++||++|.+.|....+-+ .....|. |=.+.|.|+ .||++.|+. +++
T Consensus 6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~-~s~ 73 (79)
T cd01770 6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLL-NAV 73 (79)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCc-CcE
Confidence 466766 89999999999999999999999876432 2445665 557777764 599999998 454
No 134
>PRK07440 hypothetical protein; Provisional
Probab=94.48 E-value=0.28 Score=33.16 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=46.2
Q ss_pred CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
+|+.+. +....|+.+|-+.+ ++++....+..+|.... .....++-+++||.|.++ +..+||
T Consensus 10 NG~~~~--~~~~~tl~~lL~~l----~~~~~~vav~~N~~iv~-r~~w~~~~L~~gD~IEIv--~~v~GG 70 (70)
T PRK07440 10 NGETRT--CSSGTSLPDLLQQL----GFNPRLVAVEYNGEILH-RQFWEQTQVQPGDRLEIV--TIVGGG 70 (70)
T ss_pred CCEEEE--cCCCCCHHHHHHHc----CCCCCeEEEEECCEEeC-HHHcCceecCCCCEEEEE--EEecCC
Confidence 477654 45567888776644 78888889999996654 455667789999999999 788877
No 135
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=94.47 E-value=1.1 Score=38.04 Aligned_cols=136 Identities=18% Similarity=0.242 Sum_probs=82.6
Q ss_pred cCCcEEEEEE-e-C-CcEE----EEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc------eecccccccccccCCCC
Q 045158 81 QHDKIHIIIK-F-P-SRKF----NIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG------IELDDEFRNLSEYGIRE 147 (252)
Q Consensus 81 ~~~~~~i~v~-~-~-g~~~----~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g------~~L~~d~~~L~~y~i~~ 147 (252)
....+-||+| + + .+++ .+-|+.+++|.++-..|.++.|+|++...++|.- ..+ +...++....+.+
T Consensus 65 ~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i-~~~~t~~~~el~~ 143 (249)
T PF12436_consen 65 PSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPI-DPNQTFEKAELQD 143 (249)
T ss_dssp TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--T
T ss_pred CCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEc-CCCCchhhcccCC
Confidence 3456788888 4 2 3332 3668899999999999999999999988877743 256 5889999999999
Q ss_pred CCEEEEEeeecc--ccCCCCcc---------ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEE
Q 045158 148 FSEIIVFLKTMN--RLRDNPPI---------RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIF 216 (252)
Q Consensus 148 ~s~i~l~~~~~~--~~~~~~~~---------~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l 216 (252)
|+.|-.-..+.. ......+. ..+.|.++.. ....+..+.+++....|-.+|-++|.+..|+.++..+|
T Consensus 144 GdIi~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~-~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~ 222 (249)
T PF12436_consen 144 GDIICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPK-DNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRF 222 (249)
T ss_dssp TEEEEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEET-TSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEE
T ss_pred CCEEEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEEC-CCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEE
Confidence 998877653210 00001111 1133333321 12334588999999999999999999999999998877
Q ss_pred ee
Q 045158 217 IH 218 (252)
Q Consensus 217 ~~ 218 (252)
.-
T Consensus 223 ~~ 224 (249)
T PF12436_consen 223 FT 224 (249)
T ss_dssp E-
T ss_pred EE
Confidence 53
No 136
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=94.45 E-value=0.32 Score=34.15 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=47.6
Q ss_pred CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
+|+...+ ....||.+|-+.+ ++|.....+..+|..+ .....+.+-+++||.|.++ +..+||
T Consensus 24 NG~~~~~--~~~~tl~~LL~~l----~~~~~~vAVevNg~iV-pr~~w~~t~L~egD~IEIv--~~VgGG 84 (84)
T PRK06083 24 NDQSIQV--DISSSLAQIIAQL----SLPELGCVFAINNQVV-PRSEWQSTVLSSGDAISLF--QAIAGG 84 (84)
T ss_pred CCeEEEc--CCCCcHHHHHHHc----CCCCceEEEEECCEEe-CHHHcCcccCCCCCEEEEE--EEecCC
Confidence 5776655 4556788776654 7888888999999776 5567788889999999998 777777
No 137
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=94.42 E-value=0.3 Score=32.32 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=45.3
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
++|+.+ ++....|+.+|-+.+ +++.....+..+|....- ....++-+++||.|.++ +..+||
T Consensus 5 vNG~~~--~~~~~~tl~~lL~~l----~~~~~~vav~vNg~iv~r-~~~~~~~l~~gD~vei~--~~vgGG 66 (66)
T PRK05659 5 LNGEPR--ELPDGESVAALLARE----GLAGRRVAVEVNGEIVPR-SQHASTALREGDVVEIV--HALGGG 66 (66)
T ss_pred ECCeEE--EcCCCCCHHHHHHhc----CCCCCeEEEEECCeEeCH-HHcCcccCCCCCEEEEE--EEecCC
Confidence 357755 445567888777654 888888888888866553 34566678999999999 777777
No 138
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=94.40 E-value=0.17 Score=35.24 Aligned_cols=59 Identities=12% Similarity=0.217 Sum_probs=43.4
Q ss_pred EEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 96 FNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 96 ~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
+...++-..++..||..++.+.+++.+...+...+..|+ ++++|-+-+++-..++.+.+
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~-~~k~L~dQcVqgeGlVQlnv 63 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLE-PHKSLVDQCVQGEGLVQLNV 63 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE---TTSBTTTSS----SEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceec-CCccHHHhhccccCEEEEEE
Confidence 445667788999999999999999999999999998895 99999999999999888876
No 139
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=94.37 E-value=0.26 Score=34.44 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=39.9
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCC-CceEEEEcCe
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPA-TSQTLAVSGW 47 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~-~~q~L~~~g~ 47 (252)
|+|.+.++|..+.+.+.++.+..+|+.+|++++++.. ....|.|...
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dd 48 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDD 48 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECC
Confidence 6777788999999999999999999999999999875 5566767543
No 140
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=94.37 E-value=0.25 Score=32.72 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=44.4
Q ss_pred CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
+|+.+.+ +...||.+|.+.+ +++.+...+..+|+.... ....++-+++||+|.++ +..+||
T Consensus 5 Ng~~~~~--~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~-~~~~~~~L~~gD~V~ii--~~v~GG 65 (65)
T cd00565 5 NGEPREV--EEGATLAELLEEL----GLDPRGVAVALNGEIVPR-SEWASTPLQDGDRIEIV--TAVGGG 65 (65)
T ss_pred CCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEcCH-HHcCceecCCCCEEEEE--EeccCC
Confidence 4655544 4567899888877 577788888889866543 44555679999999998 566665
No 141
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=94.16 E-value=0.35 Score=32.34 Aligned_cols=62 Identities=27% Similarity=0.317 Sum_probs=45.5
Q ss_pred cCCceEEEEecCC-CcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 181 LNGASIPLEMQDS-STVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 181 ~~g~~~~l~v~~~-~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
++|+.+.+ ... .||.+|-+.+ ++++.......++..+. ......+-+++||.|.++ +..+||
T Consensus 5 vNG~~~~~--~~~~~tv~~lL~~l----~~~~~~vav~vN~~iv~-r~~w~~~~L~~gD~iEIv--~~VgGG 67 (67)
T PRK07696 5 INGNQIEV--PESVKTVAELLTHL----ELDNKIVVVERNKDILQ-KDDHTDTSVFDGDQIEIV--TFVGGG 67 (67)
T ss_pred ECCEEEEc--CCCcccHHHHHHHc----CCCCCeEEEEECCEEeC-HHHcCceecCCCCEEEEE--EEecCC
Confidence 35776644 333 5787776544 78888888889996654 355677789999999999 788877
No 142
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=94.10 E-value=0.1 Score=35.94 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=46.9
Q ss_pred ecCCCcHHHHHHHHhhcCCC-CCCceEEeecCeeecCCccccccC-CCCCCEEEEecC
Q 045158 190 MQDSSTVNELRHLLLSSKIL-PREDYIFIHKQRIMRDNCSLRWHG-VEYGDILYVFKG 245 (252)
Q Consensus 190 v~~~~tV~~Lk~~i~~~~gi-p~~~~~l~~~g~~l~d~~tL~~y~-I~~gsti~l~~~ 245 (252)
|.++++|.++|+-+.+.... ....+.|.++|..|+|...|.+.. +++|+++.|+..
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 56789999999999887554 446789999999999998888874 899999999854
No 143
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=94.09 E-value=0.46 Score=31.56 Aligned_cols=62 Identities=26% Similarity=0.302 Sum_probs=44.4
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
.+|+.+.+ ....|+.+|.+.+ +++.....+..+++... ......+-+++||.|.++ +..+||
T Consensus 5 vNg~~~~~--~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~-r~~w~~~~L~~gD~Ieii--~~v~GG 66 (66)
T PRK08053 5 FNDQPMQC--AAGQTVHELLEQL----NQLQPGAALAINQQIIP-REQWAQHIVQDGDQILLF--QVIAGG 66 (66)
T ss_pred ECCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEeC-hHHcCccccCCCCEEEEE--EEccCC
Confidence 35777665 4456898888765 55556678888887663 344566679999999998 666766
No 144
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=94.09 E-value=0.51 Score=32.27 Aligned_cols=61 Identities=15% Similarity=0.386 Sum_probs=45.1
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeeecC---CccccccCCCCCCEEEE
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIMRD---NCSLRWHGVEYGDILYV 242 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l~d---~~tL~~y~I~~gsti~l 242 (252)
..+|+++.-.-..++|+.+|.+-|.....- ...+.|. |..+.+.+ +.||.+.|+.+ +++.+
T Consensus 9 lpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 9 LPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 457888888888999999999999876433 4456565 45566654 78999999994 55544
No 145
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=94.07 E-value=0.36 Score=38.09 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=46.0
Q ss_pred ccCC----ceEEEEecCCCcHHHHHHHHhhcCCCCCCc-eEEeec-Ceee--cCCccccccCCCCCC----EEEEec
Q 045158 180 LLNG----ASIPLEMQDSSTVNELRHLLLSSKILPRED-YIFIHK-QRIM--RDNCSLRWHGVEYGD----ILYVFK 244 (252)
Q Consensus 180 ~~~g----~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~~-g~~l--~d~~tL~~y~I~~gs----ti~l~~ 244 (252)
++.| .++.+.++++.||.+|+..|.+..++|... +.|++. +..+ .++..+..+.-.+.+ ++.+..
T Consensus 7 s~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~l~~ 83 (162)
T PF13019_consen 7 SFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLRLSL 83 (162)
T ss_pred cCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEEEEE
Confidence 4556 588889999999999999999999999887 455553 3344 455566666555444 555543
No 146
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=94.05 E-value=0.3 Score=32.23 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=44.8
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
++|+.+.+ ....|+.+|.+.+ +++++...+..+|+... .....++-+++||.|.++ +..+||
T Consensus 3 iNg~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~-~~~~~~~~L~~gD~veii--~~V~GG 64 (64)
T TIGR01683 3 VNGEPVEV--EDGLTLAALLESL----GLDPRRVAVAVNGEIVP-RSEWDDTILKEGDRIEIV--TFVGGG 64 (64)
T ss_pred ECCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCceecCCCCEEEEE--EeccCC
Confidence 35666655 4456899888876 67777778888886653 334556789999999998 666666
No 147
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=93.99 E-value=0.12 Score=35.93 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=40.7
Q ss_pred EEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEE
Q 045158 186 IPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 186 ~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l 242 (252)
+...++-...+..||..++.+.++..+.+-|......|+++++|-+.+|+-.-++.+
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQl 61 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQL 61 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEE
Confidence 345567778999999999999999999999999888899999999999987777765
No 148
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=93.91 E-value=0.31 Score=32.34 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=43.7
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
++|+.+.+. ...|+.+|-+.+ ++|.....+.+++..... ...+.+ +++||.|.++ +..+||
T Consensus 5 vNG~~~~~~--~~~tl~~ll~~l----~~~~~~vav~~N~~iv~r-~~~~~~-L~~gD~ieIv--~~VgGG 65 (65)
T PRK05863 5 VNEEQVEVD--EQTTVAALLDSL----GFPEKGIAVAVDWSVLPR-SDWATK-LRDGARLEVV--TAVQGG 65 (65)
T ss_pred ECCEEEEcC--CCCcHHHHHHHc----CCCCCcEEEEECCcCcCh-hHhhhh-cCCCCEEEEE--eeccCC
Confidence 457766553 456777776654 889989999999865543 233345 9999999998 777776
No 149
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.83 E-value=0.83 Score=31.90 Aligned_cols=71 Identities=20% Similarity=0.331 Sum_probs=57.2
Q ss_pred cEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceecc--cccccccccCCCCCCEEEEEe
Q 045158 84 KIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELD--DEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 84 ~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.-+|.|++ +|+...-.+..++|+.+|-.-+.. .|.++....|+ |--+.+. +.+.||.+.|+.+.+++.+--
T Consensus 5 ~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 5 KARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 35788996 688899999999999999999998 57788888887 5555552 235799999999999988754
No 150
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.13 Score=36.08 Aligned_cols=68 Identities=10% Similarity=0.107 Sum_probs=60.5
Q ss_pred CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecC
Q 045158 182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR 249 (252)
Q Consensus 182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~ 249 (252)
.|.++-+.|..+.+...|.+.-+.+.|=..+..+|.|+|...+-++|=.+.+..++|.|..+..-+.|
T Consensus 33 d~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG 100 (103)
T COG5227 33 DGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGG 100 (103)
T ss_pred CCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcC
Confidence 46777789999999999999999999999999999999999999999999999999999876555544
No 151
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=93.77 E-value=0.71 Score=32.63 Aligned_cols=61 Identities=10% Similarity=0.142 Sum_probs=44.6
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE----Cce-ecccccccccccCCCCCCEEEEEe
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF----SGI-ELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~----~g~-~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
..++..++..+||..+...+.+.+.| ...-||.- ++. .|.+.+.|+.+.+|.+|.+|.+..
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~ 79 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEE 79 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEe
Confidence 35677899999999999999999999 56678763 333 464566799999999999999987
No 152
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.68 E-value=0.71 Score=32.24 Aligned_cols=62 Identities=16% Similarity=0.278 Sum_probs=50.9
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeeec---CCccccccCCCCCCEEEE
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIMR---DNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l~---d~~tL~~y~I~~gsti~l 242 (252)
..+|.++.-.-..++++++|..-+.. .|.+.+.+.|+ |--+++. -+.||.+-|+.+..++++
T Consensus 12 lP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfV 78 (82)
T cd01773 12 YPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFV 78 (82)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEE
Confidence 46799998888889999999999988 57788888776 4445553 347999999999999987
No 153
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.64 E-value=0.85 Score=31.65 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=56.7
Q ss_pred cEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceecc--cccccccccCCCCCCEEEEEe
Q 045158 84 KIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELD--DEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 84 ~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--~d~~~L~~y~i~~~s~i~l~~ 155 (252)
..+|.+++ +|+.+.-.+..++|+.+|-.-|... |.++...+|+ |--+.+. +.+.+|.+.|+.+..+|.+..
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Vee 79 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILEE 79 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEEc
Confidence 45788886 6888888999999999999999874 7777778887 5666663 345799999999999888753
No 154
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.62 E-value=0.96 Score=31.79 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=53.6
Q ss_pred cEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE--Cceecc-------cccccccccCCCCCCEEEE
Q 045158 84 KIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF--SGIELD-------DEFRNLSEYGIREFSEIIV 153 (252)
Q Consensus 84 ~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~--~g~~L~-------~d~~~L~~y~i~~~s~i~l 153 (252)
..+|.+++ +|+.+.-.+..++||++|..-|..+ +-.+....|+. --+.+. +.+.||.+-|+.+.+++.+
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 46788886 6888888999999999999999754 44556777774 336663 2467999999998888776
Q ss_pred E
Q 045158 154 F 154 (252)
Q Consensus 154 ~ 154 (252)
.
T Consensus 83 ~ 83 (85)
T cd01774 83 Q 83 (85)
T ss_pred e
Confidence 3
No 155
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=93.60 E-value=0.13 Score=43.05 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=43.3
Q ss_pred EEecCCCcHHHHHHHHhhc-CCCCC----CceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158 188 LEMQDSSTVNELRHLLLSS-KILPR----EDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 188 l~v~~~~tV~~Lk~~i~~~-~gip~----~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~ 243 (252)
.....+.|+.|+++.+..+ ..+-+ ...++.-+|+.+-|+.+|++|+..+|+||++=
T Consensus 17 ~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 17 KDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred ecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 3455678999999777554 45444 23566678999999999999999999999873
No 156
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=93.58 E-value=0.42 Score=32.69 Aligned_cols=55 Identities=18% Similarity=0.085 Sum_probs=41.1
Q ss_pred eEEEEecCCCcHHHHHHHHhhcCCC----CCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158 185 SIPLEMQDSSTVNELRHLLLSSKIL----PREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 185 ~~~l~v~~~~tV~~Lk~~i~~~~gi----p~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
...++++...||.+|.+.+.+.++- ......+..+|+... .++-+++||+|.+++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~p 75 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIP 75 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeC
Confidence 4566777778999999999887532 334556667887665 567799999999973
No 157
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=93.49 E-value=0.36 Score=33.47 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=38.1
Q ss_pred EEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECce
Q 045158 87 IIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGI 131 (252)
Q Consensus 87 i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~ 131 (252)
|.|++.+ ++.+.+.+..+..+|..+|.++.++|++...|.|...
T Consensus 5 vKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 5 VKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 4455555 8999999999999999999999999999999999654
No 158
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.46 E-value=0.78 Score=31.84 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=50.3
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeeec---CCccccccCCCCCCEEEE
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIMR---DNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l~---d~~tL~~y~I~~gsti~l 242 (252)
..+|.++.-.-..++++++|..-+... |.+.+.|.|. |--+++. .+.||.+-|+.+..+|++
T Consensus 11 lP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 11 TPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 467888888888999999999999865 7777788776 4556663 357999999999999987
No 159
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=93.24 E-value=0.2 Score=34.46 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=45.9
Q ss_pred eCCCccHHHHHHHHHHHhC-CCCccEEEEECceecccccccccccC-CCCCCEEEEEeee
Q 045158 100 VDRTDTVRSLKEKIHIIDG-TPIKRMLLFFSGIELDDEFRNLSEYG-IREFSEIIVFLKT 157 (252)
Q Consensus 100 v~~~~TV~~lK~~I~~~~g-ip~~~q~L~~~g~~L~~d~~~L~~y~-i~~~s~i~l~~~~ 157 (252)
|+++++|.++++-+..... -......|.++|..| +|...|+++. +++|+++.+..+|
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L-~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRL-DDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCcc-CCchhhhhhhCCCCCcEEEEEecC
Confidence 5788999999999998765 345567788999999 4888888874 7889988887753
No 160
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=92.87 E-value=0.9 Score=38.66 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=71.4
Q ss_pred EEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC------eecCCCCCccccccccCCcEEEEEecCCC--CccC------
Q 045158 14 LEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG------WELVDGLDMEDYPIVKEGTKIDLTINPFL--QSSF------ 79 (252)
Q Consensus 14 l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g------~~L~d~~~L~~~~i~~~~t~i~l~~~~~~--~~~~------ 79 (252)
+-|+.+++|.++-..|.+..|.|++..-++|.- ..++.+.++....+.+++. |......+. ....
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdI-i~fQ~~~~~~~~~~~~~~~v~ 167 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDI-ICFQRAPSEDLDKSSRYPDVK 167 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEE-EEEEE--GG--GGGSSS-SHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCE-EEEEeccccccccccCCCCHH
Confidence 568999999999999999999999988888763 4677888999999995554 433332221 0000
Q ss_pred ----CcCCcEEEEEE-e--C-CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE
Q 045158 80 ----NQHDKIHIIIK-F--P-SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF 128 (252)
Q Consensus 80 ----~~~~~~~i~v~-~--~-g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~ 128 (252)
-....+.|.++ . + +..+.+.++...|-.+|-++|+++.|++|...+|+-
T Consensus 168 ~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~ 224 (249)
T PF12436_consen 168 EYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT 224 (249)
T ss_dssp HHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred HHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 01224555555 2 2 347999999999999999999999999999888763
No 161
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=92.22 E-value=0.97 Score=30.35 Aligned_cols=61 Identities=26% Similarity=0.295 Sum_probs=46.9
Q ss_pred CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
+|+.+ +++...|+++|-+++ |++.+......+|.... ...-+++-+++||.|.++ ++-+||
T Consensus 8 ng~~~--e~~~~~tv~dLL~~l----~~~~~~vav~vNg~iVp-r~~~~~~~l~~gD~ievv--~~v~GG 68 (68)
T COG2104 8 NGKEV--EIAEGTTVADLLAQL----GLNPEGVAVAVNGEIVP-RSQWADTILKEGDRIEVV--RVVGGG 68 (68)
T ss_pred CCEEE--EcCCCCcHHHHHHHh----CCCCceEEEEECCEEcc-chhhhhccccCCCEEEEE--EeecCC
Confidence 35544 455557999988776 89999999999996654 345677888999999998 777776
No 162
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=91.55 E-value=1.5 Score=30.63 Aligned_cols=44 Identities=11% Similarity=0.028 Sum_probs=35.7
Q ss_pred EEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCC-ccEEEEECc
Q 045158 87 IIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPI-KRMLLFFSG 130 (252)
Q Consensus 87 i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~-~~q~L~~~g 130 (252)
|-+.+.|..+.+.+.++.+..+|++.|.+++++.. ....|.|..
T Consensus 3 vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~D 47 (82)
T cd06407 3 VKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLD 47 (82)
T ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEEC
Confidence 44446788899999999999999999999999865 566677733
No 163
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=91.52 E-value=1.2 Score=30.46 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=38.4
Q ss_pred EEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC
Q 045158 2 RIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG 46 (252)
Q Consensus 2 ~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g 46 (252)
+|.+.+++....+.++++.|..+|+.+|+++++.+.....|-|..
T Consensus 3 ~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 345566889999999999999999999999999987777787764
No 164
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=91.34 E-value=1.1 Score=30.25 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=47.0
Q ss_pred CCceEEEEecCCCcHHHHHHHHhhcCC-C-CCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158 182 NGASIPLEMQDSSTVNELRHLLLSSKI-L-PREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~g-i-p~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
.| ...+.+....||.+|.+.+..+.. + ......+..+|+...+ .-.++-+++||+|.+++
T Consensus 11 ~g-~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 11 AG-EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILP 72 (77)
T ss_dssp HT-EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEE
T ss_pred hC-CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEEC
Confidence 35 666778888999999999987752 1 3356788889988887 47778889999999973
No 165
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=91.30 E-value=1.4 Score=30.97 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=41.6
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccc
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMED 57 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~ 57 (252)
|+|.+.+.|....+.++++-+..+|..+|.+++++. ....+-|... .|-.++++
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~s 56 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMGD 56 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCccccC
Confidence 455566789999999999999999999999999995 4455666655 45445543
No 166
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=91.08 E-value=0.63 Score=38.01 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=48.3
Q ss_pred EEEecCCCcHHHHHHHHhhcCCCCCCceEEe-ecC-----eeec-CCccccccCCCCCCEEEEecCe
Q 045158 187 PLEMQDSSTVNELRHLLLSSKILPREDYIFI-HKQ-----RIMR-DNCSLRWHGVEYGDILYVFKGT 246 (252)
Q Consensus 187 ~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~-~~g-----~~l~-d~~tL~~y~I~~gsti~l~~~~ 246 (252)
......+.|++++|.+++-..|.+++.+.+. |+| -.|. ++..|.+|...+|-.|+++...
T Consensus 16 Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~ 82 (234)
T KOG3206|consen 16 EKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN 82 (234)
T ss_pred hhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence 3445678899999999999999999987654 333 2454 5689999999999999998654
No 167
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=90.82 E-value=0.6 Score=44.86 Aligned_cols=210 Identities=15% Similarity=0.172 Sum_probs=111.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCCCCCceEEE--Ec--Ceec--CCCCCccccccccCCcEEEEEecCCCCccCCc-CC
Q 045158 11 EFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLA--VS--GWEL--VDGLDMEDYPIVKEGTKIDLTINPFLQSSFNQ-HD 83 (252)
Q Consensus 11 ~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~--~~--g~~L--~d~~~L~~~~i~~~~t~i~l~~~~~~~~~~~~-~~ 83 (252)
.+.+.|+.-++++.+|+.|+...+++.+..+++ ++ |..+ .++.+|+..- . +.+ |.+-+-.+ +.. ..
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~~-~-~~~-iTI~LG~~----Lk~dE~ 950 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGAF-Q-SCF-ITIKLGAP----LKSDEK 950 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhhc-c-cce-EEEEecCc----CCCCce
Confidence 577899999999999999999999999998887 32 3223 3445666552 2 222 44433222 111 11
Q ss_pred cEEEEEE--eCCc-----E-EEEeeCCCccHHHHHHHHHHHh------C--CCCccEEEEECc-----eecccccccccc
Q 045158 84 KIHIIIK--FPSR-----K-FNIDVDRTDTVRSLKEKIHIID------G--TPIKRMLLFFSG-----IELDDEFRNLSE 142 (252)
Q Consensus 84 ~~~i~v~--~~g~-----~-~~l~v~~~~TV~~lK~~I~~~~------g--ip~~~q~L~~~g-----~~L~~d~~~L~~ 142 (252)
++.|+.- +.++ . +..-+..+.||++.|..+-.+. + +.+.+.++.-++ +.+.|++.++.|
T Consensus 951 ~~KI~~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD 1030 (1203)
T KOG4598|consen 951 MMKIILLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLED 1030 (1203)
T ss_pred eeEEEeehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhh
Confidence 2333222 2221 1 3344677999999887654433 2 233333333333 334334444443
Q ss_pred cCCCCCCE-EEEEeeeccccCCCCccccceeeEEeeeeccCCceEEEE-----ecCCCcHHHHHHHHhhcCCCCCCceEE
Q 045158 143 YGIREFSE-IIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLE-----MQDSSTVNELRHLLLSSKILPREDYIF 216 (252)
Q Consensus 143 y~i~~~s~-i~l~~~~~~~~~~~~~~~~~~i~v~~~~~~~~g~~~~l~-----v~~~~tV~~Lk~~i~~~~gip~~~~~l 216 (252)
-+-.-.+- +...+. .....+++...+.++|+ .|+..+..+. +-..+.+.++|+.+.+--|||.+..-+
T Consensus 1031 ~~~~~~~~~~~qE~~--deV~~~k~~~sL~i~vR----RW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~ 1104 (1203)
T KOG4598|consen 1031 RSYNWCSHLYLQEIT--DEVMIGKPGESLPIMVR----RWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAI 1104 (1203)
T ss_pred hhhhhHHHHHHHHHH--hhcccCCCCccchhhhe----eccccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhh
Confidence 32000000 000000 01112234445677765 3544444331 234568899999999999999998644
Q ss_pred e-------ec-CeeecCCccccccC
Q 045158 217 I-------HK-QRIMRDNCSLRWHG 233 (252)
Q Consensus 217 ~-------~~-g~~l~d~~tL~~y~ 233 (252)
. +. =..|+=...+.||.
T Consensus 1105 ~Kl~~~FPC~~IS~Ld~~e~~~W~~ 1129 (1203)
T KOG4598|consen 1105 TKLKEFFPCKWISRLDMLENKVWTK 1129 (1203)
T ss_pred hhcccCCCcchhhhhhhhhcccccc
Confidence 3 22 12445455566664
No 168
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=90.50 E-value=1.3 Score=30.60 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=40.0
Q ss_pred ceEEEEecCCCcHHHHHHHHhhcC-CCCC--CceEEeecCeeecCCccccccCCCCCCEEEEecCeecC
Q 045158 184 ASIPLEMQDSSTVNELRHLLLSSK-ILPR--EDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR 249 (252)
Q Consensus 184 ~~~~l~v~~~~tV~~Lk~~i~~~~-gip~--~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~ 249 (252)
....+++....||++|++.+.... ++.. ....+..+|+... .++-+++||+|.+++ .++|
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~P-pvsG 81 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIP-PISG 81 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeC-CCCC
Confidence 445677777889999999997765 2221 1234556776643 456789999999874 3443
No 169
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=90.09 E-value=1.5 Score=29.91 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=45.5
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCc-eEEee----cC--eeecCCccccccCCC
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPRED-YIFIH----KQ--RIMRDNCSLRWHGVE 235 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~----~g--~~l~d~~tL~~y~I~ 235 (252)
.+.|....++|+++.|+.+|-++|+++.||.... +-|.+ +| .-|+.+++|.++...
T Consensus 3 llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 3 LLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp ESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 4678889999999999999999999999998655 35555 22 568889999999888
No 170
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=90.08 E-value=1.6 Score=29.83 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=37.5
Q ss_pred EEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc
Q 045158 86 HIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG 130 (252)
Q Consensus 86 ~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g 130 (252)
.+.+++.+....+.++...|-.+|+++|.++++.+.....|.|..
T Consensus 3 ~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 344556778889999999999999999999999987777787754
No 171
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=1.6 Score=30.76 Aligned_cols=64 Identities=14% Similarity=0.260 Sum_probs=56.8
Q ss_pred eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
..|.++.+.+..+.|...|-...+.+.|=..+..++.|+|+.+. .+.|=.+++..+++.|..+.
T Consensus 32 qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~-~dqTP~dldmEdnd~iEav~ 95 (103)
T COG5227 32 QDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRID-LDQTPGDLDMEDNDEIEAVT 95 (103)
T ss_pred CCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecC-CCCChhhcCCccchHHHHHH
Confidence 36788999999999999999999999999999999999999995 77999999999988776543
No 172
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=90.07 E-value=1.7 Score=28.57 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=48.2
Q ss_pred CCceEEEEecCCCcHHHHHHHHhhc---CCCCCCceEEee-cCeeecCCccccccCCCCCCEEEEec
Q 045158 182 NGASIPLEMQDSSTVNELRHLLLSS---KILPREDYIFIH-KQRIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 182 ~g~~~~l~v~~~~tV~~Lk~~i~~~---~gip~~~~~l~~-~g~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
+|+...++...+....-.+++.-+. .|-|++.+-|-- .|.+++-++...|||+..|-+++|.-
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsL 70 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSL 70 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEe
Confidence 4677777766666655556555443 478999987764 67899999999999999999999853
No 173
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=90.04 E-value=0.14 Score=44.75 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=43.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhC-CC-CCceEEEEcCeecCCCCCccccccc
Q 045158 8 NGHEFVLEVGLQEPVLEIKRKIEQIFN-IP-ATSQTLAVSGWELVDGLDMEDYPIV 61 (252)
Q Consensus 8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~-i~-~~~q~L~~~g~~L~d~~~L~~~~i~ 61 (252)
.-+.++|..+...||++||..+....- -| +..|||+|.|+.|.|+..|.+.-++
T Consensus 20 ~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrk 75 (391)
T KOG4583|consen 20 SYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRK 75 (391)
T ss_pred cccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHH
Confidence 345567888899999999999887652 33 3569999999999999988887654
No 174
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=90.02 E-value=2.5 Score=27.79 Aligned_cols=57 Identities=9% Similarity=0.064 Sum_probs=41.3
Q ss_pred EeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 90 KFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 90 ~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.++|+.+.+ + ..|+.+|.+.+ ++++....+-.++..+. .....+.-+++|+.|.++-
T Consensus 4 ~~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~--~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 4 FVNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH--KEARAQFVLHEGDRIEILS 60 (65)
T ss_pred EECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC--HHHcCccccCCCCEEEEEE
Confidence 345777766 3 35888888654 67766666778998884 4567788899999998874
No 175
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=88.47 E-value=1.9 Score=30.36 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=32.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCC---ceEEEE
Q 045158 8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPAT---SQTLAV 44 (252)
Q Consensus 8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~---~q~L~~ 44 (252)
+|+.+.+.+.|++.+.+|++.|++++|+... ...|.|
T Consensus 9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 8999999999999999999999999999873 455555
No 176
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=88.43 E-value=2.5 Score=27.84 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=49.2
Q ss_pred CCcEEEEeeCCCccHHHHHHHHHHHh---CCCCccEEEEE-CceecccccccccccCCCCCCEEEEEee
Q 045158 92 PSRKFNIDVDRTDTVRSLKEKIHIID---GTPIKRMLLFF-SGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 92 ~g~~~~l~v~~~~TV~~lK~~I~~~~---gip~~~q~L~~-~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
.|+...++.+.+...--+.++--+.. |-|++...|.- +|..| |-++.+.|||+.++-++.|.+|
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vl-D~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVL-DVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEe-eccchhhhccccccceEEEEee
Confidence 46677788888877777666665555 46888777763 67777 5789999999999999999875
No 177
>PRK06437 hypothetical protein; Provisional
Probab=88.16 E-value=5.8 Score=26.37 Aligned_cols=54 Identities=11% Similarity=0.227 Sum_probs=42.2
Q ss_pred CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 92 PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 92 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.++...++++...||++|=+. .|+++....+..+|..+. .++-+++|+.|.++-
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~------~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL------EDHNVKKEDDVLILE 62 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC------CceEcCCCCEEEEEe
Confidence 445677788888899887654 588888888889999984 466788999998863
No 178
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=88.02 E-value=6.1 Score=26.44 Aligned_cols=61 Identities=11% Similarity=0.069 Sum_probs=42.8
Q ss_pred EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
|.|.++-......+++....||.+|-+.+ +++...-.+..||.... . ++-+++|+.|.++-
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-~-----~~~l~~gD~Veii~ 65 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-E-----DDPVKDGDYVEVIP 65 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-C-----CcCcCCCCEEEEEc
Confidence 44444422235677888888999888665 77777667778888873 3 56688999988763
No 179
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=87.67 E-value=1.5 Score=32.85 Aligned_cols=55 Identities=22% Similarity=0.281 Sum_probs=39.2
Q ss_pred ecC-CCcHHHHHHHHhhc----CCCCCC------ceEEee----------------cC-eee---cCCccccccCCCCCC
Q 045158 190 MQD-SSTVNELRHLLLSS----KILPRE------DYIFIH----------------KQ-RIM---RDNCSLRWHGVEYGD 238 (252)
Q Consensus 190 v~~-~~tV~~Lk~~i~~~----~gip~~------~~~l~~----------------~g-~~l---~d~~tL~~y~I~~gs 238 (252)
|+. +.||.+|++.+.+. .|+||- ..-+++ +. -.| +++.||.++||.++.
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 666 77999998887764 466652 223332 11 256 788999999999999
Q ss_pred EEEEec
Q 045158 239 ILYVFK 244 (252)
Q Consensus 239 ti~l~~ 244 (252)
.|-+|.
T Consensus 102 EiSfF~ 107 (122)
T PF10209_consen 102 EISFFN 107 (122)
T ss_pred eeeeeC
Confidence 998874
No 180
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=87.39 E-value=2.5 Score=37.29 Aligned_cols=62 Identities=23% Similarity=0.231 Sum_probs=46.9
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
++|+.+.+ ....|+.+|-+.+ +++.+...+..||+.. +.....++-+++||.|.|+ +..+||
T Consensus 5 VNGk~~el--~e~~TL~dLL~~L----~i~~~~VAVeVNgeIV-pr~~w~~t~LkeGD~IEII--~~VgGG 66 (326)
T PRK11840 5 LNGEPRQV--PAGLTIAALLAEL----GLAPKKVAVERNLEIV-PRSEYGQVALEEGDELEIV--HFVGGG 66 (326)
T ss_pred ECCEEEec--CCCCcHHHHHHHc----CCCCCeEEEEECCEEC-CHHHcCccccCCCCEEEEE--EEecCC
Confidence 35776544 5556888776654 8888899999999776 4456677889999999999 677776
No 181
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=87.22 E-value=3.6 Score=28.19 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=38.0
Q ss_pred EEEEEeCCeEEE-EEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC
Q 045158 2 RIIIVANGHEFV-LEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG 46 (252)
Q Consensus 2 ~v~v~~~g~~~~-l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g 46 (252)
+|.+.+.+.... +.+..+.|..+|+.+|++.++.+.....|.|..
T Consensus 3 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 3 RVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 344566888887 999999999999999999999997778888853
No 182
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=86.95 E-value=7.5 Score=26.32 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=42.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCc-eEEEE----cC--eecCCCCCccccccc
Q 045158 8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATS-QTLAV----SG--WELVDGLDMEDYPIV 61 (252)
Q Consensus 8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~-q~L~~----~g--~~L~d~~~L~~~~i~ 61 (252)
+|...+++++++.|+.++=..|+++.|+.... .-|.| +| .-|+.+.+|.++...
T Consensus 5 D~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 5 DGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp SEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 78889999999999999999999999987443 56777 12 347777777777655
No 183
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=86.89 E-value=4.9 Score=26.19 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=39.7
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
++|+.+.+ ....|+++|.+.+. ++ ....+..+|+.... ..-.+.-+++||+|.++ +..+||
T Consensus 5 vNg~~~~~--~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~-~~~~~~~L~~gD~vei~--~~v~GG 65 (65)
T PRK06944 5 LNQQTLSL--PDGATVADALAAYG----AR-PPFAVAVNGDFVAR-TQHAARALAAGDRLDLV--QPVAGG 65 (65)
T ss_pred ECCEEEEC--CCCCcHHHHHHhhC----CC-CCeEEEECCEEcCc-hhcccccCCCCCEEEEE--eeccCC
Confidence 34766544 55678999888773 33 23566677765432 23445568999999998 556665
No 184
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.87 E-value=0.91 Score=39.72 Aligned_cols=55 Identities=16% Similarity=0.086 Sum_probs=45.1
Q ss_pred EEecCCCcHHHHHHHHhhcCCCCCCceEEee---cC-----eeecCCccccccCCCCCCEEEE
Q 045158 188 LEMQDSSTVNELRHLLLSSKILPREDYIFIH---KQ-----RIMRDNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 188 l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~---~g-----~~l~d~~tL~~y~I~~gsti~l 242 (252)
-.|..+-||.+++.++..+.|+.+..++|.+ +| ..++-+..|.+|.|++||.+.+
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 3466678999999999999999999987776 33 3555677899999999999865
No 185
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=86.73 E-value=6.4 Score=27.37 Aligned_cols=62 Identities=23% Similarity=0.262 Sum_probs=40.7
Q ss_pred ceEEEEecCCCcHHHHHHHHhhcCCC-----------CCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCC
Q 045158 184 ASIPLEMQDSSTVNELRHLLLSSKIL-----------PREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG 250 (252)
Q Consensus 184 ~~~~l~v~~~~tV~~Lk~~i~~~~gi-----------p~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~ 250 (252)
....++++ ..||.+|.+.+.+++.- ..+...+..+|+....+. ..-+++||+|.+++ .++||
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~---~~~l~dgdev~i~P-pvsGG 88 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGL---GTELKDGDVVAIFP-PVSGG 88 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccC---CCCCCCCCEEEEeC-CCcCC
Confidence 34567776 78999999999877531 112345566776555432 26789999999874 44443
No 186
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=86.46 E-value=2.7 Score=28.53 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=37.6
Q ss_pred EEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC
Q 045158 4 IIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG 46 (252)
Q Consensus 4 ~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g 46 (252)
.|.+ +|..-.+.+.|++||.|+=.++.++.|+.++.-.+++.|
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 4545 888889999999999999999999999999888777654
No 187
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=86.44 E-value=6 Score=27.04 Aligned_cols=59 Identities=25% Similarity=0.272 Sum_probs=40.6
Q ss_pred eEEEEecCC-CcHHHHHHHHhhcCC-CC--CCceEEeecCeeecCCccccccCCCCCCEEEEecCeecC
Q 045158 185 SIPLEMQDS-STVNELRHLLLSSKI-LP--REDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR 249 (252)
Q Consensus 185 ~~~l~v~~~-~tV~~Lk~~i~~~~g-ip--~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~ 249 (252)
...+++... .||.+|++.+.+++. +- .....+..+++...+ +.-+++||+|.+++ .++|
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~P-pvsG 79 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIP-PVSG 79 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeC-CCCC
Confidence 346777766 899999999988863 21 123455567766553 56889999999874 3444
No 188
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=86.42 E-value=4.7 Score=27.59 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=37.7
Q ss_pred EEEEEEeCCcEEE-EeeCCCccHHHHHHHHHHHhCCCCccEEEEECc
Q 045158 85 IHIIIKFPSRKFN-IDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG 130 (252)
Q Consensus 85 ~~i~v~~~g~~~~-l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g 130 (252)
+.+-+.+.+.... +.+..+.|..+|+.+|++.++.+.....|.|.+
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 2 VRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 3455566777666 899999999999999999999998888888843
No 189
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=86.24 E-value=3.6 Score=27.98 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=36.5
Q ss_pred EEEEEeCCeEEEEEec-CCCcHHHHHHHHHHHhCCCCCceEEEEcC
Q 045158 2 RIIIVANGHEFVLEVG-LQEPVLEIKRKIEQIFNIPATSQTLAVSG 46 (252)
Q Consensus 2 ~v~v~~~g~~~~l~v~-~~~tV~~lK~~I~~~~~i~~~~q~L~~~g 46 (252)
+|.+.++|....+.+. .+.|..+|+.+|+++++.+.....+.|..
T Consensus 2 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 4556678888899988 99999999999999999986555665654
No 190
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=86.03 E-value=5 Score=27.91 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=31.3
Q ss_pred EEEEEeCCeEEEEEecC--CCcHHHHHHHHHHHhCCC
Q 045158 2 RIIIVANGHEFVLEVGL--QEPVLEIKRKIEQIFNIP 36 (252)
Q Consensus 2 ~v~v~~~g~~~~l~v~~--~~tV~~lK~~I~~~~~i~ 36 (252)
+|.++++|.+..+.+++ +.+..+|++.|+..++++
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 45567799999999999 669999999999999999
No 191
>smart00455 RBD Raf-like Ras-binding domain.
Probab=85.83 E-value=3.2 Score=27.94 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=37.6
Q ss_pred EEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC
Q 045158 4 IIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG 46 (252)
Q Consensus 4 ~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g 46 (252)
.|.+ +|+...+.+.|+.|+.|+=.++.++.|+.++.-.++..|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 3444 889999999999999999999999999999888887755
No 192
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=85.73 E-value=6.5 Score=27.68 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=37.8
Q ss_pred cEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECce
Q 045158 84 KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGI 131 (252)
Q Consensus 84 ~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~ 131 (252)
.+.|-|.+.|..+.+.++++.+..+|..+|.+++++. ....+.|...
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 3566666789999999999999999999999999995 4555656443
No 193
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=85.53 E-value=1.4 Score=39.49 Aligned_cols=69 Identities=20% Similarity=0.349 Sum_probs=56.0
Q ss_pred CcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHh-CCCCccEEEE--ECceecccccccccccCCCCCCEE
Q 045158 83 DKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIID-GTPIKRMLLF--FSGIELDDEFRNLSEYGIREFSEI 151 (252)
Q Consensus 83 ~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~-gip~~~q~L~--~~g~~L~~d~~~L~~y~i~~~s~i 151 (252)
+.-.|-|++ +|...-..++.+.||.+++.-|.... +.+...+.|+ |--++|.||..||.+-|+.+-..+
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 345688885 68888888999999999999998765 6666677776 678999989999999999876544
No 194
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=85.41 E-value=7 Score=26.44 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=40.6
Q ss_pred EEEEeeCCCccHHHHHHHHHHHhCC----CCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 95 KFNIDVDRTDTVRSLKEKIHIIDGT----PIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 95 ~~~l~v~~~~TV~~lK~~I~~~~gi----p~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
...++++...||.+|.+.+....+- ......+..||+... .++-+++|+.|.++-
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~------~~~~l~~gD~v~i~p 75 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR------LDTPLKDGDEVAIIP 75 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC------CCcccCCCCEEEEeC
Confidence 3667777789999999999887532 234455667888773 356789999999874
No 195
>smart00455 RBD Raf-like Ras-binding domain.
Probab=85.33 E-value=2.4 Score=28.56 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=36.0
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecC
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ 220 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g 220 (252)
..+|+...+.+.+..|+.++=+.+.++.|+.++...+...|
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 35789999999999999999999999999999887776644
No 196
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=85.15 E-value=6.1 Score=27.15 Aligned_cols=65 Identities=8% Similarity=0.088 Sum_probs=42.6
Q ss_pred EEEEEEe-C------C-cEEEEeeCCCccHHHHHHHHHHHh-CCCC--ccEEEEECceecccccccccccCCCCCCEEEE
Q 045158 85 IHIIIKF-P------S-RKFNIDVDRTDTVRSLKEKIHIID-GTPI--KRMLLFFSGIELDDEFRNLSEYGIREFSEIIV 153 (252)
Q Consensus 85 ~~i~v~~-~------g-~~~~l~v~~~~TV~~lK~~I~~~~-gip~--~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l 153 (252)
|.|.|++ . | +...+++....||++|.+.+.... ++.. ..-.+..||+... .++-+++|++|.+
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~------~~~~l~dgDeVai 75 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT------ESAALKDGDELAI 75 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC------CCcCcCCCCEEEE
Confidence 5677773 1 3 456778888899999999997654 2211 1123556777652 3456788999988
Q ss_pred Ee
Q 045158 154 FL 155 (252)
Q Consensus 154 ~~ 155 (252)
+-
T Consensus 76 ~P 77 (82)
T PLN02799 76 IP 77 (82)
T ss_pred eC
Confidence 63
No 197
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=84.93 E-value=4.9 Score=25.97 Aligned_cols=47 Identities=15% Similarity=0.329 Sum_probs=35.6
Q ss_pred EEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 97 NIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 97 ~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.+++....|..+||.++..... .++++|-+.. + ++-+++|+.|.++-
T Consensus 9 ~~~~~~~~tl~~lr~~~k~~~D------I~I~NGF~~~-~-----d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKPDAD------IVILNGFPTK-E-----DIELKEGDEVFLIK 55 (57)
T ss_pred EEEcCCCcCHHHHHHhhCCCCC------EEEEcCcccC-C-----ccccCCCCEEEEEe
Confidence 4567788899999998765322 5789999885 4 56778888888764
No 198
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=84.13 E-value=3.6 Score=38.89 Aligned_cols=64 Identities=22% Similarity=0.348 Sum_probs=42.8
Q ss_pred CceEEEEecCCCcHHHHHHHHhhc--CCCCC------CceEEee----cCe-eecCC-------------ccccccCCCC
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSS--KILPR------EDYIFIH----KQR-IMRDN-------------CSLRWHGVEY 236 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~--~gip~------~~~~l~~----~g~-~l~d~-------------~tL~~y~I~~ 236 (252)
+..+++.|-..|||..+|++|-+. .+.|. +..-|.+ .|+ .|.|. +||+.|+|.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 345778888999999999999775 35553 3445543 122 45442 5899999999
Q ss_pred CCEEEEecCe
Q 045158 237 GDILYVFKGT 246 (252)
Q Consensus 237 gsti~l~~~~ 246 (252)
|+++-|++..
T Consensus 281 ga~vaLv~k~ 290 (539)
T PF08337_consen 281 GATVALVPKQ 290 (539)
T ss_dssp TEEEEEEES-
T ss_pred CceEEEeecc
Confidence 9999998764
No 199
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=83.64 E-value=3.6 Score=30.92 Aligned_cols=64 Identities=9% Similarity=0.005 Sum_probs=43.8
Q ss_pred cccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccc
Q 045158 167 IRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRW 231 (252)
Q Consensus 167 ~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~ 231 (252)
|+.++|.|.-..+. ..+..-+-|+...||+++...|+.+.++++++.+|..++..+..+.++.+
T Consensus 25 PdrIPVIvEk~~~s-~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 25 PGHVAVVVEAAEKA-GSKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred CCccEEEEeecCCC-CCceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 44566666443221 23333336999999999999999999999999666667766666655543
No 200
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=83.45 E-value=5.6 Score=27.65 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=40.2
Q ss_pred CceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe-ecCeeecCCccccccCCCCCCEEEEec
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI-HKQRIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~-~~g~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
+..+.+..+...||+++-+.+ |+|....-++ -+|+.-+- +|-+++||.|.+++
T Consensus 22 ~~~~~~~~~~~~tvkd~IEsL----GVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIESL----GVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHHHc----CCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 566778888888998876655 9999887444 47765443 48899999999875
No 201
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=82.86 E-value=4.2 Score=27.79 Aligned_cols=49 Identities=12% Similarity=0.044 Sum_probs=39.7
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCcc
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCS 228 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~t 228 (252)
..+|+..++.|.+.+|++++-+.++.+.++.++..+|--+...++|..-
T Consensus 6 lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~~~~ 54 (77)
T cd01818 6 LPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMENHEY 54 (77)
T ss_pred CCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCCccE
Confidence 4679999999999999999999999999998887766555444565443
No 202
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=82.60 E-value=3 Score=28.32 Aligned_cols=41 Identities=15% Similarity=0.057 Sum_probs=35.6
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecC
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ 220 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g 220 (252)
..+|+.-.+.|.+..|+.++-+++.++.|+.++.+.+...|
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 35788999999999999999999999999999887666554
No 203
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=82.44 E-value=5.3 Score=27.10 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=34.5
Q ss_pred EEEEeCCcEEEEeeC-CCccHHHHHHHHHHHhCCCCccEEEEECc
Q 045158 87 IIIKFPSRKFNIDVD-RTDTVRSLKEKIHIIDGTPIKRMLLFFSG 130 (252)
Q Consensus 87 i~v~~~g~~~~l~v~-~~~TV~~lK~~I~~~~gip~~~q~L~~~g 130 (252)
+.+++.|....+.+. ...|..+|+++|.++.+.+.....+.|..
T Consensus 3 vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 3 VKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred EEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 444566777778887 89999999999999999987566666644
No 204
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=82.14 E-value=7.9 Score=25.34 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=40.8
Q ss_pred CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 92 PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 92 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
+|+.+ +++...||.+|.+.+ +++.....+..+|+... .....++-+++|+.|.++-
T Consensus 5 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~--~~~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 5 NGEPR--EVEEGATLAELLEEL----GLDPRGVAVALNGEIVP--RSEWASTPLQDGDRIEIVT 60 (65)
T ss_pred CCeEE--EcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcC--HHHcCceecCCCCEEEEEE
Confidence 35544 455678999888664 57777778889999884 3445667899999998864
No 205
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=82.12 E-value=2.5 Score=37.54 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=58.4
Q ss_pred CEEEEE-e--CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCC--CCccccccccCCcEEEEEe
Q 045158 1 MRIIIV-A--NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDG--LDMEDYPIVKEGTKIDLTI 71 (252)
Q Consensus 1 M~v~v~-~--~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~--~~L~~~~i~~~~t~i~l~~ 71 (252)
|.++|. . ..+.+.+++..+-....++..++...|++.+.--|+|+++++.++ .++.+||+..+.+ +.+--
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~ds-l~lr~ 75 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDS-LALRC 75 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhccccccee-EeccC
Confidence 677773 2 566788999999999999999999999999999999999999877 3789999997766 55443
No 206
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=81.81 E-value=8.9 Score=36.32 Aligned_cols=64 Identities=27% Similarity=0.320 Sum_probs=43.0
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHh--CCC------CccEEEEE----Cce-eccccc------------ccccccCCCCC
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIID--GTP------IKRMLLFF----SGI-ELDDEF------------RNLSEYGIREF 148 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~--gip------~~~q~L~~----~g~-~L~~d~------------~~L~~y~i~~~ 148 (252)
..+.+.|-.-|||.++|++|-+.. +.| ++..-|.| .|. .|.|++ .||+.|+|.+|
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 281 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDG 281 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TT
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCC
Confidence 447788888999999999998764 554 34455655 223 454221 49999999999
Q ss_pred CEEEEEeee
Q 045158 149 SEIIVFLKT 157 (252)
Q Consensus 149 s~i~l~~~~ 157 (252)
+++.|+.+.
T Consensus 282 a~vaLv~k~ 290 (539)
T PF08337_consen 282 ATVALVPKQ 290 (539)
T ss_dssp EEEEEEES-
T ss_pred ceEEEeecc
Confidence 999998863
No 207
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=80.86 E-value=2.9 Score=37.13 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=56.5
Q ss_pred CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccc-cccccccCCCCCCEEEEEee
Q 045158 93 SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDE-FRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 93 g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d-~~~L~~y~i~~~s~i~l~~~ 156 (252)
...+++++.......+++..++...|++.+.-.|+|+.+.+..+ +..+..||...++++.+.-+
T Consensus 12 ~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~k 76 (380)
T KOG0012|consen 12 EKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCK 76 (380)
T ss_pred eeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCC
Confidence 45688999999999999999999999999999999999999645 57899999999999887653
No 208
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=80.21 E-value=5.6 Score=25.71 Aligned_cols=40 Identities=8% Similarity=0.338 Sum_probs=30.6
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccc
Q 045158 13 VLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDY 58 (252)
Q Consensus 13 ~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~ 58 (252)
.+++..+.|+.+||.++.. +.-.++++|-+..++..|.+.
T Consensus 9 ~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~L~e~ 48 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKP------DADIVILNGFPTKEDIELKEG 48 (57)
T ss_pred EEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCccccCCC
Confidence 4677888999999998754 333789999998877666654
No 209
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=79.99 E-value=4.5 Score=28.49 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=34.5
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCC---CceEEee
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPR---EDYIFIH 218 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~---~~~~l~~ 218 (252)
...|+++-+.+.++..+.+|++.|.++.|+.. ..+.|.|
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 45799999999999999999999999999987 4677877
No 210
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=79.81 E-value=18 Score=25.28 Aligned_cols=63 Identities=10% Similarity=0.117 Sum_probs=45.8
Q ss_pred EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
+.+.+..+|+.+.+ +...||.+|=.. .++++....+-.||..+. ....+.+-+++|+.|.++-
T Consensus 17 ~~m~I~VNG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp--r~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 17 VLITISINDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVP--RSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred ceEEEEECCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeC--HHHcCcccCCCCCEEEEEE
Confidence 34444455776654 556787776554 578888778889999994 4667888899999998864
No 211
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=79.61 E-value=12 Score=24.50 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=40.0
Q ss_pred eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.+|+.+.+ ....|+.+|=+. .+++.....+..++..+..+.+ ..+ +++|+.|.++-
T Consensus 5 vNG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~--~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 5 VNEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW--ATK-LRDGARLEVVT 60 (65)
T ss_pred ECCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh--hhh-cCCCCEEEEEe
Confidence 34665554 456787776543 6889888889999998853433 456 99999998874
No 212
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.53 E-value=4.2 Score=35.76 Aligned_cols=57 Identities=23% Similarity=0.181 Sum_probs=45.6
Q ss_pred EEeeCCCccHHHHHHHHHHHhCCCCccEEEEE---Cce-----ecccccccccccCCCCCCEEEEE
Q 045158 97 NIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF---SGI-----ELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 97 ~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~---~g~-----~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
...+.-+-||.+++..+..+-|+.+.+++|++ .|+ .+ +.+..|.+|+|++|+.+.+-
T Consensus 351 s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~-~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 351 SGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSS-DYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred ceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCcccc-CCCCcceEEeccCCCEeeee
Confidence 34456678999999999999999999999997 333 34 45678999999999987653
No 213
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=79.50 E-value=14 Score=29.64 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=42.6
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCc-eEEee--cC----eeecCCccccccCCCC
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPRED-YIFIH--KQ----RIMRDNCSLRWHGVEY 236 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~--~g----~~l~d~~tL~~y~I~~ 236 (252)
..+|....+.++++.||+++-+.+.++.|++... +-|.+ .+ .-++...+|.+...+.
T Consensus 10 l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~ 73 (207)
T smart00295 10 LLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKS 73 (207)
T ss_pred ecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCC
Confidence 3678899999999999999999999999997644 33332 11 3456677888777764
No 214
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=79.09 E-value=1 Score=39.57 Aligned_cols=62 Identities=24% Similarity=0.374 Sum_probs=45.9
Q ss_pred EEEEEEeCC---cEEEEeeCCCccHHHHHHHHHHHh-CCC-CccEEEEECceecccccccccccCCCC
Q 045158 85 IHIIIKFPS---RKFNIDVDRTDTVRSLKEKIHIID-GTP-IKRMLLFFSGIELDDEFRNLSEYGIRE 147 (252)
Q Consensus 85 ~~i~v~~~g---~~~~l~v~~~~TV~~lK~~I~~~~-gip-~~~q~L~~~g~~L~~d~~~L~~y~i~~ 147 (252)
..+++|.+. +..++..+...||.+||..++.-. +=| ...|+|+|.|+.|. |+..|.+.-++.
T Consensus 10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgklll-d~qcl~d~lrkq 76 (391)
T KOG4583|consen 10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLL-DHQCLTDWLRKQ 76 (391)
T ss_pred eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccc-cchhHHHHHHHH
Confidence 455556433 335677778899999999998765 333 45799999999995 999888876543
No 215
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=78.83 E-value=13 Score=26.46 Aligned_cols=44 Identities=11% Similarity=0.251 Sum_probs=34.5
Q ss_pred EEEEeCCeEEEEEecC-----CCcHHHHHHHHHHHhCCCC-CceEEEEcC
Q 045158 3 IIIVANGHEFVLEVGL-----QEPVLEIKRKIEQIFNIPA-TSQTLAVSG 46 (252)
Q Consensus 3 v~v~~~g~~~~l~v~~-----~~tV~~lK~~I~~~~~i~~-~~q~L~~~g 46 (252)
|.++++|....+.+.. +.+..+|+.+|++.+++++ ....|.|..
T Consensus 3 vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 3 VKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred EEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 4556788887777774 7999999999999999997 445566643
No 216
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=78.80 E-value=4.1 Score=39.42 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=38.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCee
Q 045158 8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWE 48 (252)
Q Consensus 8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~ 48 (252)
....+.+-+++++|+..++..|...+|+|...|.|+|.|..
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 77888999999999999999999999999999999998753
No 217
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=78.56 E-value=14 Score=24.07 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=40.2
Q ss_pred CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 92 PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 92 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
+|+.+. +....||.+|.+. .++++....+..+|.... .....++-+++|+.|.++-
T Consensus 4 Ng~~~~--~~~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~--~~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 4 NGEPVE--VEDGLTLAALLES----LGLDPRRVAVAVNGEIVP--RSEWDDTILKEGDRIEIVT 59 (64)
T ss_pred CCeEEE--cCCCCcHHHHHHH----cCCCCCeEEEEECCEEcC--HHHcCceecCCCCEEEEEE
Confidence 455544 4556789888875 467777777788998884 2345677899999998864
No 218
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=78.53 E-value=12 Score=25.24 Aligned_cols=51 Identities=12% Similarity=-0.011 Sum_probs=35.9
Q ss_pred EEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEc--CeecCCCC
Q 045158 3 IIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVS--GWELVDGL 53 (252)
Q Consensus 3 v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~--g~~L~d~~ 53 (252)
+.|.+ +|+.-.+.+.|+.||.|+=.++.++.|+.++.-.++.. .++|+-+.
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTS
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCC
Confidence 34555 88888999999999999999999999999876555543 34555443
No 219
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=78.28 E-value=15 Score=26.00 Aligned_cols=57 Identities=7% Similarity=0.181 Sum_probs=38.0
Q ss_pred eEEEEecCCCcHHHHHHHHhhcCCCCCCceEEee----cC-eeec-CCccccccCCCCCCEEEE
Q 045158 185 SIPLEMQDSSTVNELRHLLLSSKILPREDYIFIH----KQ-RIMR-DNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 185 ~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~----~g-~~l~-d~~tL~~y~I~~gsti~l 242 (252)
.++......|||..+.+.+++.+.| ...-||-- ++ ..|. ...|+.+-|+..|-+|.|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vli 77 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLI 77 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEE
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEE
Confidence 3445567799999999999999999 44455543 12 3454 457999999999998865
No 220
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=77.63 E-value=4.8 Score=39.03 Aligned_cols=46 Identities=28% Similarity=0.367 Sum_probs=39.6
Q ss_pred EEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECce
Q 045158 86 HIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGI 131 (252)
Q Consensus 86 ~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~ 131 (252)
+||--.....+.+.++++.|...+++.|+..+|+|...|.|.|.|.
T Consensus 317 hiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~ 362 (732)
T KOG4250|consen 317 HIFSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGG 362 (732)
T ss_pred EEEeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecC
Confidence 4444445677899999999999999999999999999999999865
No 221
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=77.24 E-value=13 Score=25.90 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=31.9
Q ss_pred EEEEeCCcEEEEeeCC--CccHHHHHHHHHHHhCCCCccEEEEE
Q 045158 87 IIIKFPSRKFNIDVDR--TDTVRSLKEKIHIIDGTPIKRMLLFF 128 (252)
Q Consensus 87 i~v~~~g~~~~l~v~~--~~TV~~lK~~I~~~~gip~~~q~L~~ 128 (252)
|.+.+.|.+..+.+++ +.|..+|++.|..+++++ ...|-|
T Consensus 3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 4445688888888888 679999999999999998 444444
No 222
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=77.19 E-value=4.7 Score=27.80 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=33.6
Q ss_pred ceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecC
Q 045158 184 ASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ 220 (252)
Q Consensus 184 ~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g 220 (252)
-|+.+.+.+-....+|+.+|.++..+|++.-.|.|+.
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 4677888999999999999999999999999999964
No 223
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=77.00 E-value=7 Score=36.31 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=50.1
Q ss_pred CceEEEEecCCCcHHHHHHHHhhcCCC------CCCceEEee-cCeeecCCccccccCCCCCCEEEEecC
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSSKIL------PREDYIFIH-KQRIMRDNCSLRWHGVEYGDILYVFKG 245 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~~gi------p~~~~~l~~-~g~~l~d~~tL~~y~I~~gsti~l~~~ 245 (252)
.+.+-+-++....|++|--.|.+..+- ++..+.|.- +|..++.+.||.+.||.+||+++|.+.
T Consensus 11 ~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 11 RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 455667788888999999888776432 345677765 668999999999999999999999863
No 224
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=76.90 E-value=6.5 Score=27.09 Aligned_cols=38 Identities=13% Similarity=0.070 Sum_probs=34.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCe
Q 045158 10 HEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGW 47 (252)
Q Consensus 10 ~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~ 47 (252)
-++.+.+.++.+..+|..+|.+++..+++.-+|-|.-.
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~ 44 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAP 44 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCC
Confidence 35778999999999999999999999999999998643
No 225
>PRK01777 hypothetical protein; Validated
Probab=76.50 E-value=18 Score=25.92 Aligned_cols=52 Identities=19% Similarity=0.087 Sum_probs=34.5
Q ss_pred eEEEEecCCCcHHHHHHHHhhcCCCCCC--ce-----EEeecCeeecCCccccccCCCCCCEEEEecC
Q 045158 185 SIPLEMQDSSTVNELRHLLLSSKILPRE--DY-----IFIHKQRIMRDNCSLRWHGVEYGDILYVFKG 245 (252)
Q Consensus 185 ~~~l~v~~~~tV~~Lk~~i~~~~gip~~--~~-----~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~ 245 (252)
...+++....||.++=+.. ||+.+ .. .+.-+|+.-. .++-+++||+|.|++.
T Consensus 18 ~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~-----~d~~L~dGDRVeIyrP 76 (95)
T PRK01777 18 LQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAK-----LTDVLRDGDRVEIYRP 76 (95)
T ss_pred EEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECC-----CCCcCCCCCEEEEecC
Confidence 3568889999999887776 66554 22 2323343332 2567899999999864
No 226
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=76.49 E-value=4.2 Score=29.21 Aligned_cols=30 Identities=30% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEECceecccccccccccCCCCCCEEEEEee
Q 045158 125 LLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 125 ~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
.|.|.|++|. .+.+|++| +-.+..-.++++
T Consensus 3 ~LW~aGK~l~-~~k~l~dy-~GkNEKtKiivK 32 (98)
T PF11069_consen 3 QLWWAGKELQ-RGKKLSDY-IGKNEKTKIIVK 32 (98)
T ss_pred eEEecccccc-CCCcHHHh-cCCCcceeEEEE
Confidence 5889999996 88999999 433333344444
No 227
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=75.12 E-value=20 Score=23.32 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=41.6
Q ss_pred eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
++|+.+ ++....||.++-.. .+++...-.+..+|..+. .....+.-+++|+.|.++-
T Consensus 5 vNG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~--r~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 5 LNGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVP--RSQHASTALREGDVVEIVH 61 (66)
T ss_pred ECCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeC--HHHcCcccCCCCCEEEEEE
Confidence 446655 45567788876643 688888888889998884 3456677799999998864
No 228
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=74.55 E-value=21 Score=23.58 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=41.6
Q ss_pred EeCCcEEEEeeCCC-ccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 90 KFPSRKFNIDVDRT-DTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 90 ~~~g~~~~l~v~~~-~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
..+|+.+.+ ... .||.+|-+ ..++++....+-.+|..+. ......+-+++|+.|.++-
T Consensus 4 ~vNG~~~~~--~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~--r~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 4 KINGNQIEV--PESVKTVAELLT----HLELDNKIVVVERNKDILQ--KDDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred EECCEEEEc--CCCcccHHHHHH----HcCCCCCeEEEEECCEEeC--HHHcCceecCCCCEEEEEE
Confidence 344775544 343 57776654 4688888888889999984 3567788899999998863
No 229
>PRK07440 hypothetical protein; Provisional
Probab=74.10 E-value=23 Score=23.65 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=45.0
Q ss_pred cEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 84 KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 84 ~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
+|.|.+ +|+.+ ++....||.+|-. ..++++....+-.+|..+. .....++-+++|+.|.++-
T Consensus 4 ~m~i~v--NG~~~--~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~--r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 4 PITLQV--NGETR--TCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILH--RQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred ceEEEE--CCEEE--EcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeC--HHHcCceecCCCCEEEEEE
Confidence 344444 47754 4556788887664 4678888888889999884 4567888899999998864
No 230
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=73.64 E-value=19 Score=25.69 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=34.6
Q ss_pred EEecCCCcHHHHHHHHhhcCCCCCCceEEeecC------eeecCC---ccc--cccCCCCCCEEEEecCeecC
Q 045158 188 LEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ------RIMRDN---CSL--RWHGVEYGDILYVFKGTVSR 249 (252)
Q Consensus 188 l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g------~~l~d~---~tL--~~y~I~~gsti~l~~~~~~~ 249 (252)
++++...||.+|-+.+.+++. +...-.|.-+| .+|-++ +.| .++-+++||+|.+++ .+.|
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~-~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P-~v~G 93 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLL-EERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIS-TLHG 93 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCc-hhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEEC-CCCC
Confidence 334356799999999987762 11111111111 223233 344 468899999999985 4444
No 231
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=73.34 E-value=8 Score=34.74 Aligned_cols=62 Identities=23% Similarity=0.234 Sum_probs=49.3
Q ss_pred EEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhC-CCCCceEEE--EcCeecCCCC-CccccccccCCc
Q 045158 3 IIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFN-IPATSQTLA--VSGWELVDGL-DMEDYPIVKEGT 65 (252)
Q Consensus 3 v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~-i~~~~q~L~--~~g~~L~d~~-~L~~~~i~~~~t 65 (252)
|-|++ +|..+...++.+.||.|++..|..... -+...+.|+ |=-++|.|+. ||++-|+. +++
T Consensus 308 IQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~-Nsv 374 (380)
T KOG2086|consen 308 IQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLL-NSV 374 (380)
T ss_pred EEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccch-hhh
Confidence 55666 888899999999999999999998764 444567666 4578888776 99999998 444
No 232
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=72.67 E-value=12 Score=27.58 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=30.9
Q ss_pred ceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecC
Q 045158 184 ASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ 220 (252)
Q Consensus 184 ~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g 220 (252)
+.-...|++++|++-+-..|....+++...+.|.|=.
T Consensus 45 K~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN 81 (116)
T KOG3439|consen 45 KKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVN 81 (116)
T ss_pred ecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEc
Confidence 3445779999999999999999999999988777633
No 233
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=71.27 E-value=32 Score=32.04 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=54.8
Q ss_pred EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCC----C--CccEEEE-ECceecccccccccccCCCCCCEEEEEe
Q 045158 85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGT----P--IKRMLLF-FSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gi----p--~~~q~L~-~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.+++|..+.+...+-+..+..|.++--.|-+..+- + .....|. .+|.+|+ .+.+|.+.+|.+|++++|.-
T Consensus 3 ~RVtV~~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~-~~~sL~~~gV~DG~~L~L~p 79 (452)
T TIGR02958 3 CRVTVLAGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLD-PDASLAEAGVRDGELLVLVP 79 (452)
T ss_pred EEEEEeeCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCC-CCCCHHHcCCCCCCeEEEee
Confidence 35667766777888899999999999999887754 1 2233344 4778994 88999999999999999874
No 234
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=71.16 E-value=1.3 Score=38.51 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHH----------HhCCCCCceE-----EEEcCeecCCCCCccccccc
Q 045158 19 QEPVLEIKRKIEQ----------IFNIPATSQT-----LAVSGWELVDGLDMEDYPIV 61 (252)
Q Consensus 19 ~~tV~~lK~~I~~----------~~~i~~~~q~-----L~~~g~~L~d~~~L~~~~i~ 61 (252)
+.||.++|..++. ..++|.+..+ |+|+.+++.|..+|.+..=.
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~ 160 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLAD 160 (309)
T ss_dssp ----------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhc
Confidence 6899999999999 8999999998 99999999999998887543
No 235
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=71.01 E-value=37 Score=24.77 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=49.4
Q ss_pred CCcEEEEEEeC--CcEEEEeeCCCccHHHHHHHHHHHh----C--CCCc-cEEEEECce--ecccccccccccC-----C
Q 045158 82 HDKIHIIIKFP--SRKFNIDVDRTDTVRSLKEKIHIID----G--TPIK-RMLLFFSGI--ELDDEFRNLSEYG-----I 145 (252)
Q Consensus 82 ~~~~~i~v~~~--g~~~~l~v~~~~TV~~lK~~I~~~~----g--ip~~-~q~L~~~g~--~L~~d~~~L~~y~-----i 145 (252)
++.+.|.|.+. ...+++.+++++|+.+|.+.+-.+. + -+++ +..|-..|+ -|. ....|.+|. +
T Consensus 15 ~~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~-~~~~L~~~~yIr~cl 93 (108)
T smart00144 15 ANKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLL-GDHPLGSFEYIRNCL 93 (108)
T ss_pred CCeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEe-CCeeeechHHHHHHH
Confidence 34555666654 3569999999999999998887652 1 2333 566777775 354 446777774 6
Q ss_pred CCCCEEEEEe
Q 045158 146 REFSEIIVFL 155 (252)
Q Consensus 146 ~~~s~i~l~~ 155 (252)
..|..++|.+
T Consensus 94 ~~~~~~~L~L 103 (108)
T smart00144 94 KNGREPHLVL 103 (108)
T ss_pred hcCCCceEEE
Confidence 7777888776
No 236
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=70.79 E-value=30 Score=23.48 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=38.9
Q ss_pred EEEEeeCCC-ccHHHHHHHHHHHhC-C-C-CccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 95 KFNIDVDRT-DTVRSLKEKIHIIDG-T-P-IKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 95 ~~~l~v~~~-~TV~~lK~~I~~~~g-i-p-~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
...+++... .||.+|.+.+.++.. + . .....+..|++... + +.-+++|+.|.++-
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~-~-----~~~l~dgDevai~P 75 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVT-D-----DALLNEGDEVAFIP 75 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcC-C-----CcCcCCCCEEEEeC
Confidence 356777766 899999999988763 1 1 12345667777773 3 56789999998874
No 237
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=70.64 E-value=14 Score=26.03 Aligned_cols=51 Identities=20% Similarity=0.086 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHhh-cCCCCCCc----eEEeecCee----ecCCccccccCCCCCCEEEEe
Q 045158 193 SSTVNELRHLLLS-SKILPRED----YIFIHKQRI----MRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 193 ~~tV~~Lk~~i~~-~~gip~~~----~~l~~~g~~----l~d~~tL~~y~I~~gsti~l~ 243 (252)
..|+.+|-+++.. +.|+.... ..++|.... -...++|+++||.+|+.+.+-
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred hCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 3599999998754 56765422 234443321 223479999999999998764
No 238
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=70.41 E-value=7.9 Score=38.19 Aligned_cols=63 Identities=13% Similarity=0.249 Sum_probs=49.6
Q ss_pred CCceEEEEecCC-CcHHHHHHHHhhcCCCCCCceEEee-cCeeecCCccccccCC--CCCCEEEEec
Q 045158 182 NGASIPLEMQDS-STVNELRHLLLSSKILPREDYIFIH-KQRIMRDNCSLRWHGV--EYGDILYVFK 244 (252)
Q Consensus 182 ~g~~~~l~v~~~-~tV~~Lk~~i~~~~gip~~~~~l~~-~g~~l~d~~tL~~y~I--~~gsti~l~~ 244 (252)
.|++.++..... .|+++||..|+.+.|+...++.|.- +|.-|..+++|..|.- .+-+-||+|+
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFn 69 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFN 69 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEee
Confidence 467777665543 5999999999999999998886554 6688999999999984 5556688873
No 239
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=69.80 E-value=34 Score=23.63 Aligned_cols=57 Identities=12% Similarity=0.217 Sum_probs=38.9
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHhCC------C-----CccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIIDGT------P-----IKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~gi------p-----~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
....+++. ..||.+|.+.+.++..- . -....+..||+... .... .-+++|+.|.++-
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~-~~~~---~~l~dgdev~i~P 83 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVD-WGLG---TELKDGDVVAIFP 83 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecC-ccCC---CCCCCCCEEEEeC
Confidence 34667776 88999999999877531 0 12355667888774 3221 6789999998874
No 240
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=69.54 E-value=30 Score=22.95 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=45.2
Q ss_pred EEEEeeCCCccHHHHHHHHHHHhC-C-CCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 95 KFNIDVDRTDTVRSLKEKIHIIDG-T-PIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 95 ~~~l~v~~~~TV~~lK~~I~~~~g-i-p~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
...+.+....||.+|.+.+..+.. . ......+..||+... + ...+.-+++|+.|.++-
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~-~--~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVP-D--DGLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEG-G--GTTTSBEETTEEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcC-C--ccCCcCcCCCCEEEEEC
Confidence 556778889999999999987763 1 235667888999885 5 46678889999999874
No 241
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=69.48 E-value=28 Score=23.35 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=33.6
Q ss_pred EEEEeC-CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc
Q 045158 87 IIIKFP-SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG 130 (252)
Q Consensus 87 i~v~~~-g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g 130 (252)
+.|.++ |+...+.+.+..||.++=+++.++.|+.++...++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 455554 67788999999999999999999999999887776544
No 242
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=69.12 E-value=7.5 Score=27.37 Aligned_cols=33 Identities=9% Similarity=0.218 Sum_probs=30.8
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCc
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPRED 213 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~ 213 (252)
.+|.++.+.+..+++.+++-+.+..+.|+|.+-
T Consensus 9 pdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 9 PDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred cCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 569999999999999999999999999999874
No 243
>KOG4261 consensus Talin [Cytoskeleton]
Probab=69.05 E-value=22 Score=34.98 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=77.5
Q ss_pred CcEEEEeeCCCccHHHHHHHHHHHhC---CCCccEEEEE------CceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158 93 SRKFNIDVDRTDTVRSLKEKIHIIDG---TPIKRMLLFF------SGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD 163 (252)
Q Consensus 93 g~~~~l~v~~~~TV~~lK~~I~~~~g---ip~~~q~L~~------~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~ 163 (252)
+-.-++.+.|+.+|.+--..|.+++- .-+....|+. .|.-|+ .+++|.+|-+.+++++.---+ +
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle-~grt~~~y~~~n~d~~ey~~k------~ 84 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLE-AGRTLDYYMLRNGDTLEYKRK------Q 84 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeec-CCccHHHHHHhcccccchhhh------c
Confidence 44467889999999998888887762 1144455543 566785 999999999999998763221 1
Q ss_pred CCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCC-CceEEee
Q 045158 164 NPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPR-EDYIFIH 218 (252)
Q Consensus 164 ~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~-~~~~l~~ 218 (252)
. .+.+. ++.|-..++.|+.+.+|..|.--|+.+.||.- +.|-|..
T Consensus 85 r----~lkvr------mldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslvr 130 (1003)
T KOG4261|consen 85 R----PLKVR------MLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLVR 130 (1003)
T ss_pred c----cceee------ecccccceeeecccccHHHHHHHHHhccCccchhhhhhhH
Confidence 1 13333 35688888899999999999999999988853 4455443
No 244
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=68.83 E-value=28 Score=24.70 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=31.3
Q ss_pred EEEEeCCcEEEEeeC-----CCccHHHHHHHHHHHhCCCC-ccEEEEECc
Q 045158 87 IIIKFPSRKFNIDVD-----RTDTVRSLKEKIHIIDGTPI-KRMLLFFSG 130 (252)
Q Consensus 87 i~v~~~g~~~~l~v~-----~~~TV~~lK~~I~~~~gip~-~~q~L~~~g 130 (252)
|.|.+.|....+.+. ++.+...|+++|++.+.+|+ ....|.|..
T Consensus 3 vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 3 VKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred EEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 334456655555555 47899999999999999987 455566633
No 245
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=67.97 E-value=16 Score=29.26 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=32.6
Q ss_pred cEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCC
Q 045158 84 KIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPI 121 (252)
Q Consensus 84 ~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~ 121 (252)
.+.+.|.+ +|....+.++++.|+.++-..+.++.|++.
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~ 41 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRE 41 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCc
Confidence 35667774 688889999999999999999999999964
No 246
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=67.37 E-value=23 Score=23.83 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=30.7
Q ss_pred CCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccC-CCCCCEEEEe
Q 045158 193 SSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHG-VEYGDILYVF 243 (252)
Q Consensus 193 ~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~-I~~gsti~l~ 243 (252)
.+|.++|.+...+++|.+ ..-.|.-+| -...|-. |++||.+|++
T Consensus 25 P~SleeLl~ia~~kfg~~-~~~v~~~dg------aeIdDI~~IRDgD~L~~~ 69 (69)
T PF11834_consen 25 PDSLEELLKIASEKFGFS-ATKVLNEDG------AEIDDIDVIRDGDHLYLV 69 (69)
T ss_pred CccHHHHHHHHHHHhCCC-ceEEEcCCC------CEEeEEEEEEcCCEEEEC
Confidence 479999999999999997 333444444 3333334 3888888874
No 247
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=67.13 E-value=33 Score=22.47 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=39.8
Q ss_pred CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 92 PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 92 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
+|+.+.+ ....||.+|-+. .+.+.....+-.++..+. ......+-+++|+.|.++-
T Consensus 6 Ng~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~--r~~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 6 NDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIP--REQWAQHIVQDGDQILLFQ 61 (66)
T ss_pred CCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeC--hHHcCccccCCCCEEEEEE
Confidence 4666554 556788888765 455556667778998884 3456677799999998864
No 248
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=66.83 E-value=35 Score=22.77 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=42.6
Q ss_pred EEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158 89 IKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 89 v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
+.++|+.. +++...|+++|=+. .|+++.......||.... .....+.-+++|+.|.++
T Consensus 5 i~~ng~~~--e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVp--r~~~~~~~l~~gD~ievv 62 (68)
T COG2104 5 IQLNGKEV--EIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVP--RSQWADTILKEGDRIEVV 62 (68)
T ss_pred EEECCEEE--EcCCCCcHHHHHHH----hCCCCceEEEEECCEEcc--chhhhhccccCCCEEEEE
Confidence 33446654 45555899987654 788888888899999884 355678888999988875
No 249
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=66.22 E-value=15 Score=25.82 Aligned_cols=51 Identities=27% Similarity=0.120 Sum_probs=28.7
Q ss_pred CccHHHHHHHHHH-HhCCCCccEEEEECceecc---------cccccccccCCCCCCEEEEEe
Q 045158 103 TDTVRSLKEKIHI-IDGTPIKRMLLFFSGIELD---------DEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 103 ~~TV~~lK~~I~~-~~gip~~~q~L~~~g~~L~---------~d~~~L~~y~i~~~s~i~l~~ 155 (252)
..|+.+|-.+|-. +.|+..... .++|..+- ...++|+++||.+|+.+.+.-
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~v--~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D 68 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPDV--SVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDD 68 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEEE--EES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEE
T ss_pred hCcHHHHHHHHHHhccCCCCCEE--EeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEE
Confidence 6799999998754 667644222 22333221 134789999999999988764
No 250
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=65.81 E-value=39 Score=23.15 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=34.2
Q ss_pred CceEEEEecCCCcHHHHHHHHhhcCCCC--CCceEEee------cCeeecCCc
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSSKILP--REDYIFIH------KQRIMRDNC 227 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~~gip--~~~~~l~~------~g~~l~d~~ 227 (252)
+...++.|...+|..++-+.+.++.++. +..|.|.- ..+.|+|+.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e 64 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDE 64 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCC
Confidence 5667799999999999999999999887 44565542 335666654
No 251
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=64.66 E-value=29 Score=23.60 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=35.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCe
Q 045158 8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGW 47 (252)
Q Consensus 8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~ 47 (252)
+|..-.+.+.|++||.|+=.++.++.|++++.--++..|.
T Consensus 8 dg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 8 DGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 7788889999999999999999999999988877776553
No 252
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=64.30 E-value=9.4 Score=26.40 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=35.1
Q ss_pred cHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCCC
Q 045158 195 TVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGGY 252 (252)
Q Consensus 195 tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~~ 252 (252)
+-++.++.+ +++++-.++. -+.+.+|--..+||.++||.|-+...+-+.|.|
T Consensus 19 s~eE~~~lL-~~y~i~~~qL-----P~I~~~DPv~r~~g~k~GdVvkI~R~S~taG~~ 70 (79)
T PRK09570 19 SEEEAKKLL-KEYGIKPEQL-----PKIKASDPVVKAIGAKPGDVIKIVRKSPTAGEA 70 (79)
T ss_pred CHHHHHHHH-HHcCCCHHHC-----CceeccChhhhhcCCCCCCEEEEEECCCCCCcc
Confidence 444444433 4456655543 134667778888999999999999888777754
No 253
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=64.25 E-value=23 Score=24.91 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=36.1
Q ss_pred EEecCCCcHHHHHHHHhhcCCCCCCc-eEEeecCe-eecCCcc---ccccCCCCCCEEEE
Q 045158 188 LEMQDSSTVNELRHLLLSSKILPRED-YIFIHKQR-IMRDNCS---LRWHGVEYGDILYV 242 (252)
Q Consensus 188 l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~~g~-~l~d~~t---L~~y~I~~gsti~l 242 (252)
+-|+.+.||+.+...|+.+.++++++ .+|..+.. ....+.+ |.++- +++..+++
T Consensus 20 flv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi 78 (87)
T cd01612 20 FKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIV 78 (87)
T ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEE
Confidence 45888999999999999999998776 45555553 2233333 33333 45556665
No 254
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=63.90 E-value=31 Score=25.41 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=38.4
Q ss_pred CcEEEEEEeCC-----cEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECcee
Q 045158 83 DKIHIIIKFPS-----RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIE 132 (252)
Q Consensus 83 ~~~~i~v~~~g-----~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~ 132 (252)
..+.|..+..| +.-...|++++|++.+-..+.+..+++++.|...|=+..
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~s 83 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNS 83 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCc
Confidence 34556666334 345677999999999999999999999999987775543
No 255
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=63.38 E-value=45 Score=22.76 Aligned_cols=52 Identities=25% Similarity=0.233 Sum_probs=32.3
Q ss_pred CCcHHHHHHHHhhcCC-----CCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCC
Q 045158 193 SSTVNELRHLLLSSKI-----LPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG 250 (252)
Q Consensus 193 ~~tV~~Lk~~i~~~~g-----ip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~ 250 (252)
..||.+|++.+.++.. .-....+..-+++ +.. .+.-+++||+|-+++ .++||
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~-~~~----~~~~l~dgDeVai~P-PVsGG 81 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQT-LVS----FDHPLTDGDEVAFFP-PVTGG 81 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCE-EcC----CCCCCCCCCEEEEeC-CCCCC
Confidence 3699999999988751 1112233444553 222 245699999999874 45544
No 256
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=63.28 E-value=17 Score=25.15 Aligned_cols=52 Identities=17% Similarity=0.053 Sum_probs=38.3
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecC-----eeecCCcccccc
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ-----RIMRDNCSLRWH 232 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g-----~~l~d~~tL~~y 232 (252)
++|-+..+..+..-+-+.|+++|+..+++|.+...++|-. ..|.++.-|.++
T Consensus 7 ~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~ 63 (82)
T cd06397 7 FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDF 63 (82)
T ss_pred eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHH
Confidence 5677777777777799999999999999999888888722 344444445443
No 257
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=63.07 E-value=38 Score=21.83 Aligned_cols=56 Identities=7% Similarity=0.033 Sum_probs=36.8
Q ss_pred eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
++|+.+. +....|+++|-+.+ +++ ....+..+|.... .....+.-+++|+.|.++-
T Consensus 5 vNg~~~~--~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~--~~~~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 5 LNQQTLS--LPDGATVADALAAY----GAR-PPFAVAVNGDFVA--RTQHAARALAAGDRLDLVQ 60 (65)
T ss_pred ECCEEEE--CCCCCcHHHHHHhh----CCC-CCeEEEECCEEcC--chhcccccCCCCCEEEEEe
Confidence 3466554 45677899888765 343 3345667888773 2335566689999999874
No 258
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=62.65 E-value=27 Score=25.10 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=31.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEE
Q 045158 8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAV 44 (252)
Q Consensus 8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~ 44 (252)
+|++-.+.|+.+.|..+|+.++.+..+++.. ..|-|
T Consensus 21 GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 21 GGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred CCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 8899999999999999999999999999876 55544
No 259
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=61.21 E-value=40 Score=24.25 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=29.7
Q ss_pred EEE-EeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCC
Q 045158 3 III-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPAT 38 (252)
Q Consensus 3 v~v-~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~ 38 (252)
|.| +.++...++.+..+.||.|+-..+++++.++..
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~ 41 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSG 41 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCC
Confidence 344 446666789999999999999999999988763
No 260
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=60.83 E-value=25 Score=26.39 Aligned_cols=57 Identities=32% Similarity=0.438 Sum_probs=39.5
Q ss_pred eeCC-CccHHHHHHHHHHHh----CCCCcc------EEEEE----------------C-ceec--ccccccccccCCCCC
Q 045158 99 DVDR-TDTVRSLKEKIHIID----GTPIKR------MLLFF----------------S-GIEL--DDEFRNLSEYGIREF 148 (252)
Q Consensus 99 ~v~~-~~TV~~lK~~I~~~~----gip~~~------q~L~~----------------~-g~~L--~~d~~~L~~y~i~~~ 148 (252)
.|+. +.||.+|++.+.+.- |+||-+ .+++. . ++.| .+++.+|.++||.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 3676 889999988887653 665433 23332 1 1455 247789999999999
Q ss_pred CEEEEEe
Q 045158 149 SEIIVFL 155 (252)
Q Consensus 149 s~i~l~~ 155 (252)
..|-+.-
T Consensus 101 TEiSfF~ 107 (122)
T PF10209_consen 101 TEISFFN 107 (122)
T ss_pred ceeeeeC
Confidence 9998875
No 261
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=60.58 E-value=11 Score=28.37 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=35.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccc
Q 045158 10 HEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMED 57 (252)
Q Consensus 10 ~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~ 57 (252)
+.-.+-|+.+.||+++...|..+.++++++.-|+.++..+..+.++++
T Consensus 41 K~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 41 KVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 444457999999999999999999999998433345555555556553
No 262
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=59.93 E-value=53 Score=22.76 Aligned_cols=52 Identities=23% Similarity=0.377 Sum_probs=40.4
Q ss_pred CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE-ECceecccccccccccCCCCCCEEEEE
Q 045158 93 SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF-FSGIELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 93 g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~-~~g~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
+..+.+.+....||.++-+ ..|+|..+.-++ .||+.-. - +|-+++|+.|.+.
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~-~-----~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVD-F-----DYRLKDGDRVAVY 74 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECC-C-----cccCCCCCEEEEE
Confidence 3567788999999888654 489999988755 5888773 3 5888999998875
No 263
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=59.06 E-value=30 Score=25.62 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=32.3
Q ss_pred EEecCCCcHHHHHHHHhhcCCCCCCc-eEEeecCeeecCCcccc
Q 045158 188 LEMQDSSTVNELRHLLLSSKILPRED-YIFIHKQRIMRDNCSLR 230 (252)
Q Consensus 188 l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~~g~~l~d~~tL~ 230 (252)
+-|+.+.||+++...|+.+..+++++ .+|..++.....+.++.
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~ 88 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMS 88 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHH
Confidence 45899999999999999999998877 45555664444555543
No 264
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=58.41 E-value=3.2 Score=36.15 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=0.0
Q ss_pred CccHHHHHHHHHH----------HhCCCCccEE-----EEECceecccccccccccCCC
Q 045158 103 TDTVRSLKEKIHI----------IDGTPIKRML-----LFFSGIELDDEFRNLSEYGIR 146 (252)
Q Consensus 103 ~~TV~~lK~~I~~----------~~gip~~~q~-----L~~~g~~L~~d~~~L~~y~i~ 146 (252)
+.||.++|..+++ ..++|.+..+ |.|+-+.+. |+.+|.+..-.
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~-~~ktl~e~l~~ 160 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVG-DSKTLAEVLAD 160 (309)
T ss_dssp -----------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCC-CcCcHHHHHhc
Confidence 6889999999999 8899999988 999999995 89999887644
No 265
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=56.48 E-value=55 Score=22.70 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=36.3
Q ss_pred EEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEc
Q 045158 2 RIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVS 45 (252)
Q Consensus 2 ~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~ 45 (252)
+..++++|.+-.+.++..-|-..|+++|+..+++|+...-+.|-
T Consensus 2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi 45 (82)
T cd06397 2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI 45 (82)
T ss_pred eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE
Confidence 34567788888888888889999999999999999887666663
No 266
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=55.91 E-value=22 Score=25.94 Aligned_cols=44 Identities=9% Similarity=0.124 Sum_probs=32.3
Q ss_pred EEecCCCcHHHHHHHHhhcCCCCCCc-eEEeecCeeecCCccccc
Q 045158 188 LEMQDSSTVNELRHLLLSSKILPRED-YIFIHKQRIMRDNCSLRW 231 (252)
Q Consensus 188 l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~~g~~l~d~~tL~~ 231 (252)
+=|+...||+++...|..+..+++++ .+|..++.....+.++++
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHH
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHH
Confidence 34788899999999999999998876 566667766666666653
No 267
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=54.78 E-value=52 Score=23.62 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=30.7
Q ss_pred CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE
Q 045158 92 PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF 128 (252)
Q Consensus 92 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~ 128 (252)
.|++-.+.|+.+.|..+|++++.+..+++.. ..|.|
T Consensus 21 GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 21 GGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred CCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 5788889999999999999999999998866 55544
No 268
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=54.50 E-value=44 Score=33.30 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=47.8
Q ss_pred CcEEEEeeCC-CccHHHHHHHHHHHhCCCCccEEEEECc-eecccccccccccCC--CCCCEEEEEee
Q 045158 93 SRKFNIDVDR-TDTVRSLKEKIHIIDGTPIKRMLLFFSG-IELDDEFRNLSEYGI--REFSEIIVFLK 156 (252)
Q Consensus 93 g~~~~l~v~~-~~TV~~lK~~I~~~~gip~~~q~L~~~g-~~L~~d~~~L~~y~i--~~~s~i~l~~~ 156 (252)
|+..+++.+. ..|+++||..|+...|+.+..|.+.-+| .-+ +-++.|..|.- .+-+.|.++.+
T Consensus 4 GqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecm-aadkrl~e~StaGTdTnPiffFnk 70 (1424)
T KOG4572|consen 4 GQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECM-AADKRLAEISTAGTDTNPIFFFNK 70 (1424)
T ss_pred CceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCc-ccccchhhhccccCCCCceEEeeh
Confidence 6666777665 6799999999999999999999987655 456 46688888873 45556666643
No 269
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=54.18 E-value=39 Score=26.23 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=24.4
Q ss_pred CEEEEEeCCeEEEEEecCC-CcHHHHHHHHHHH
Q 045158 1 MRIIIVANGHEFVLEVGLQ-EPVLEIKRKIEQI 32 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~-~tV~~lK~~I~~~ 32 (252)
|+|+|.++...+.+.+..+ .||.+|-.+-..+
T Consensus 1 mkvtV~fg~~~vvVPC~dg~~tV~~L~~~A~~R 33 (145)
T PF12053_consen 1 MKVTVCFGRTRVVVPCGDGQLTVRDLIQQALRR 33 (145)
T ss_dssp -EEEEEETTEEEEEEESSS---HHHHHHHHHHH
T ss_pred CeEEEEeCCeEEEEEeCCCCccHHHHHHHHhHh
Confidence 9999999999999999966 8999997665443
No 270
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=53.35 E-value=6 Score=35.30 Aligned_cols=48 Identities=31% Similarity=0.316 Sum_probs=41.7
Q ss_pred CCcEEEEeeC-CCccHHHHHHHHHHHhCCCCccEEEEECceecccccccc
Q 045158 92 PSRKFNIDVD-RTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNL 140 (252)
Q Consensus 92 ~g~~~~l~v~-~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L 140 (252)
+|....+.+. .+..+..+|.++.+..++++..|.+.+.|..|. |+.++
T Consensus 291 dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~-d~~~~ 339 (341)
T KOG0007|consen 291 DGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLK-DNRSL 339 (341)
T ss_pred CCceeeeccccccccccccccccccccccchhheeeccCCcccC-ccccc
Confidence 5777777777 788999999999999999999999999999996 76544
No 271
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=52.88 E-value=14 Score=27.59 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=25.8
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHH
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKI 29 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I 29 (252)
|+|.|+.+++.+..++..+.|..+|.+++
T Consensus 1 mkI~i~i~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITIGGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEETTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEECCEEEEEEECCCHHHHHHHHhC
Confidence 89999999999999999999988888765
No 272
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=52.72 E-value=57 Score=22.50 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=26.1
Q ss_pred CcHHHHHHHHHHHhCCCCCceEEEE--cCeecCCC
Q 045158 20 EPVLEIKRKIEQIFNIPATSQTLAV--SGWELVDG 52 (252)
Q Consensus 20 ~tV~~lK~~I~~~~~i~~~~q~L~~--~g~~L~d~ 52 (252)
.|..+|+.|..++++++.+.-+|.. .|...+|+
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddE 55 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDE 55 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSC
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccH
Confidence 6899999999999999987777765 56666655
No 273
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=51.65 E-value=24 Score=24.03 Aligned_cols=50 Identities=20% Similarity=0.397 Sum_probs=30.4
Q ss_pred cHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCC
Q 045158 195 TVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG 250 (252)
Q Consensus 195 tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~ 250 (252)
+-++.++.+ +++++..++. -+.+.+|--..+||.++||.|-+...+-+.|
T Consensus 16 s~eE~~~lL-~~y~i~~~qL-----P~I~~~DPv~r~~g~k~GdVvkI~R~S~taG 65 (74)
T PF01191_consen 16 SEEEKKELL-KKYNIKPEQL-----PKILSSDPVARYLGAKPGDVVKIIRKSETAG 65 (74)
T ss_dssp -HHHHHHHH-HHTT--TTCS-----SEEETTSHHHHHTT--TTSEEEEEEEETTTS
T ss_pred CHHHHHHHH-HHhCCChhhC-----CcccccChhhhhcCCCCCCEEEEEecCCCCC
Confidence 334444433 3457755553 2346777788899999999999998877765
No 274
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=50.56 E-value=24 Score=24.36 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=17.6
Q ss_pred EEEEecCCCcHHHHHHHHHHH
Q 045158 12 FVLEVGLQEPVLEIKRKIEQI 32 (252)
Q Consensus 12 ~~l~v~~~~tV~~lK~~I~~~ 32 (252)
+.++++.+.|+.++|..+.++
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHH
T ss_pred eEEEccCcCcHHHHHHHHHHH
Confidence 578999999999999988765
No 275
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=50.34 E-value=1.2e+02 Score=26.87 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=44.0
Q ss_pred EeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 90 KFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 90 ~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.++|+.+. +....||.+|-.. .+++.+...+..||..+. .....++-+++|+.|.++-
T Consensus 4 ~VNGk~~e--l~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp--r~~w~~t~LkeGD~IEII~ 61 (326)
T PRK11840 4 RLNGEPRQ--VPAGLTIAALLAE----LGLAPKKVAVERNLEIVP--RSEYGQVALEEGDELEIVH 61 (326)
T ss_pred EECCEEEe--cCCCCcHHHHHHH----cCCCCCeEEEEECCEECC--HHHcCccccCCCCEEEEEE
Confidence 34476544 4566788776644 688988888889999994 4567888899999999875
No 276
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=50.06 E-value=36 Score=23.72 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=29.7
Q ss_pred EEEEecCCCcHHHHHHHHhhcCCCC-CCce--EEeecC--eeecCC
Q 045158 186 IPLEMQDSSTVNELRHLLLSSKILP-REDY--IFIHKQ--RIMRDN 226 (252)
Q Consensus 186 ~~l~v~~~~tV~~Lk~~i~~~~gip-~~~~--~l~~~g--~~l~d~ 226 (252)
.++.|.+..|+++|-.++.++..+. ++.| +|.-+| ..|.|+
T Consensus 16 KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd 61 (87)
T cd01776 16 KTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPD 61 (87)
T ss_pred eeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcc
Confidence 3578999999999999999999884 4555 444455 455554
No 277
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=49.54 E-value=71 Score=22.04 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=26.6
Q ss_pred CcHHHHHHHHHHHhCCCCCceEEEE--cCeecCCCC
Q 045158 20 EPVLEIKRKIEQIFNIPATSQTLAV--SGWELVDGL 53 (252)
Q Consensus 20 ~tV~~lK~~I~~~~~i~~~~q~L~~--~g~~L~d~~ 53 (252)
.|..+|+.|..+++++|...-+|+. .|...+|+.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEe 56 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEE 56 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHH
Confidence 5799999999999999765555554 688887653
No 278
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=49.13 E-value=83 Score=21.45 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=32.7
Q ss_pred eEEEEecCCCcHHHHHHHHhhcCCCC--CCceEEe-e---cC--eeecCCc
Q 045158 185 SIPLEMQDSSTVNELRHLLLSSKILP--REDYIFI-H---KQ--RIMRDNC 227 (252)
Q Consensus 185 ~~~l~v~~~~tV~~Lk~~i~~~~gip--~~~~~l~-~---~g--~~l~d~~ 227 (252)
..++.|..++|+.++-+.+-++.+++ +..|.|. + .| +.|+++.
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E 68 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDE 68 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCC
Confidence 66789999999999999999999993 3457773 2 22 6777653
No 279
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=47.90 E-value=1.1e+02 Score=22.52 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=36.8
Q ss_pred CCcCCcEEEEEEeC-Cc--EEEEeeCCCccHHHHHHHHHHHhCCC-----CccEEEE
Q 045158 79 FNQHDKIHIIIKFP-SR--KFNIDVDRTDTVRSLKEKIHIIDGTP-----IKRMLLF 127 (252)
Q Consensus 79 ~~~~~~~~i~v~~~-g~--~~~l~v~~~~TV~~lK~~I~~~~gip-----~~~q~L~ 127 (252)
+..+|.|+.+..-. ++ +-.+.|+.++|+.++.+.+-+++.+. +....|+
T Consensus 18 lef~gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALY 74 (112)
T cd01782 18 LEFHGVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLY 74 (112)
T ss_pred cEEeeEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEE
Confidence 44678899999943 33 35689999999999999999998743 3455554
No 280
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=47.83 E-value=31 Score=24.86 Aligned_cols=31 Identities=35% Similarity=0.361 Sum_probs=23.1
Q ss_pred EEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158 41 TLAVSGWELVDGLDMEDYPIVKEGTKIDLTI 71 (252)
Q Consensus 41 ~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~ 71 (252)
.|.|+|+.|..+.+|++|-=.++-|.|.+-+
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl 33 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKL 33 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEe
Confidence 4889999999999999994455555544433
No 281
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=47.74 E-value=68 Score=21.89 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHHhCCCCCceEEEE--cCeecCCCC
Q 045158 20 EPVLEIKRKIEQIFNIPATSQTLAV--SGWELVDGL 53 (252)
Q Consensus 20 ~tV~~lK~~I~~~~~i~~~~q~L~~--~g~~L~d~~ 53 (252)
.|..+|+.|..++++++...-+|.. .|..++|+.
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEe 54 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEE 54 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHH
Confidence 5799999999999999965555543 688887753
No 282
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=46.92 E-value=52 Score=22.73 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=34.2
Q ss_pred CCceEEEEecCCCcHHHHHHHHhhcCCCCC--CceEEe--e-cC--eeecCC
Q 045158 182 NGASIPLEMQDSSTVNELRHLLLSSKILPR--EDYIFI--H-KQ--RIMRDN 226 (252)
Q Consensus 182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~--~~~~l~--~-~g--~~l~d~ 226 (252)
.+...++.|.+.+|+.++-..+.++.+++. ..|.|. . +| +.|+++
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~ 65 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDD 65 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCC
Confidence 356778999999999999999999999975 455544 2 33 667664
No 283
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=46.76 E-value=52 Score=23.22 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=33.5
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHhCCCCccEE-EEECceec
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRML-LFFSGIEL 133 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~-L~~~g~~L 133 (252)
+.+++.|+++.|=.++|+.|+..+|+++...+ +.+.|+.-
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~k 61 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKK 61 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCce
Confidence 56899999999999999999999999987765 55666543
No 284
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=46.69 E-value=13 Score=25.56 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=21.3
Q ss_pred HHhhcCCCCCCceEEee---cCeeecCCccccccCCCC
Q 045158 202 LLLSSKILPREDYIFIH---KQRIMRDNCSLRWHGVEY 236 (252)
Q Consensus 202 ~i~~~~gip~~~~~l~~---~g~~l~d~~tL~~y~I~~ 236 (252)
.|+++.-..++.-.|.- .+.+|+=+++|.++||++
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 47888888888877765 347888899999999974
No 285
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=46.30 E-value=1.1e+02 Score=21.98 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=46.3
Q ss_pred CCcEEEEEEeC--CcEEEEeeCCCccHHHHHHHHHHHh--CCC----CccEEEEECce--ecccccccccccC-----CC
Q 045158 82 HDKIHIIIKFP--SRKFNIDVDRTDTVRSLKEKIHIID--GTP----IKRMLLFFSGI--ELDDEFRNLSEYG-----IR 146 (252)
Q Consensus 82 ~~~~~i~v~~~--g~~~~l~v~~~~TV~~lK~~I~~~~--gip----~~~q~L~~~g~--~L~~d~~~L~~y~-----i~ 146 (252)
...+.|.|.+. ...+++.++.+.|+.+|-+.+-.+. +.. .++..|-..|+ -|. .+.+|.+|. +.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~-g~~~L~~y~yIr~cl~ 92 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLL-GDHPLSQYEYIRQCLK 92 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE--SSS-GGGBHHHHHHHH
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEee-CCeeeeccHHHHHHHh
Confidence 34566777754 5669999999999999988887662 221 22566777775 454 557788874 56
Q ss_pred CCCEEEEEe
Q 045158 147 EFSEIIVFL 155 (252)
Q Consensus 147 ~~s~i~l~~ 155 (252)
.+..++|.+
T Consensus 93 ~~~~~~L~L 101 (106)
T PF00794_consen 93 RGKDPHLVL 101 (106)
T ss_dssp CT--EEEEE
T ss_pred cCCCcEEEE
Confidence 666777665
No 286
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=46.03 E-value=60 Score=22.08 Aligned_cols=38 Identities=8% Similarity=0.095 Sum_probs=32.3
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEee
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIH 218 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~ 218 (252)
.+|.+-.+.+.+-.||.+.-.++.++-|++++..-+..
T Consensus 7 Pdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~ 44 (73)
T cd01817 7 PDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFL 44 (73)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEE
Confidence 46788889999999999999999999999988764433
No 287
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=45.62 E-value=87 Score=21.47 Aligned_cols=38 Identities=5% Similarity=-0.000 Sum_probs=32.8
Q ss_pred EEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEE
Q 045158 5 IVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTL 42 (252)
Q Consensus 5 v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L 42 (252)
|.+ +|+..++.+.|++|+.|+=+-..++.+..|..--|
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~L 42 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYL 42 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHhee
Confidence 434 88999999999999999999999999998876544
No 288
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=45.19 E-value=61 Score=31.88 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=63.2
Q ss_pred EEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE----Cceecc-cccccccccCCCCCCEEEEEeeeccccCCCCcccc
Q 045158 95 KFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF----SGIELD-DEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRR 169 (252)
Q Consensus 95 ~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~----~g~~L~-~d~~~L~~y~i~~~s~i~l~~~~~~~~~~~~~~~~ 169 (252)
-+.+.|+...+++.+|+.|++..++|.+..++.. +|..+. .++.+|+.. .++.+|.+.+-. .+..+- .+
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~--~Lk~dE--~~ 951 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGA--PLKSDE--KM 951 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecC--cCCCCc--ee
Confidence 4678999999999999999999999999988873 333332 255677654 577777776621 122221 11
Q ss_pred ceeeEEeeeeccCCce------EEEEecCCCcHHHHHHHHhhc
Q 045158 170 LSFKVQTSSSLLNGAS------IPLEMQDSSTVNELRHLLLSS 206 (252)
Q Consensus 170 ~~i~v~~~~~~~~g~~------~~l~v~~~~tV~~Lk~~i~~~ 206 (252)
++|..-. .+...+ ...-+..+.||+..|.++-.+
T Consensus 952 ~KI~~L~---~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~ 991 (1203)
T KOG4598|consen 952 MKIILLD---ILENERENWKPLFELVVSQSTTIGQVKLELLRM 991 (1203)
T ss_pred eEEEeeh---hhhccccCCcchhhhhhcCcccHHHHHHHHHHH
Confidence 2222110 011111 123367788999888766543
No 289
>PRK01777 hypothetical protein; Validated
Probab=44.69 E-value=1.1e+02 Score=21.77 Aligned_cols=48 Identities=13% Similarity=0.003 Sum_probs=30.1
Q ss_pred CEEEEEe----CCeEEEEEecCCCcHHHHHHHHHHHhCCCCC--c-----eEEEEcCeecCCC
Q 045158 1 MRIIIVA----NGHEFVLEVGLQEPVLEIKRKIEQIFNIPAT--S-----QTLAVSGWELVDG 52 (252)
Q Consensus 1 M~v~v~~----~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~--~-----q~L~~~g~~L~d~ 52 (252)
|+|.|.+ ......+++.++.||.++=.. .|++.. . -.+.-+|+...-+
T Consensus 4 i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~----sgi~~~~pei~~~~~~vgI~Gk~v~~d 62 (95)
T PRK01777 4 IRVEVVYALPERQYLQRLTLQEGATVEEAIRA----SGLLELRTDIDLAKNKVGIYSRPAKLT 62 (95)
T ss_pred eEEEEEEECCCceEEEEEEcCCCCcHHHHHHH----cCCCccCcccccccceEEEeCeECCCC
Confidence 5677744 334467899999999987654 365544 2 2444566655433
No 290
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=44.05 E-value=46 Score=24.24 Aligned_cols=43 Identities=14% Similarity=-0.009 Sum_probs=31.0
Q ss_pred EecCCCcHHHHHHHHHHHhCCCCCc-eEEEEcCeecCCCCCccc
Q 045158 15 EVGLQEPVLEIKRKIEQIFNIPATS-QTLAVSGWELVDGLDMED 57 (252)
Q Consensus 15 ~v~~~~tV~~lK~~I~~~~~i~~~~-q~L~~~g~~L~d~~~L~~ 57 (252)
-|..+.||+++...|..+..+++++ .-|+.++.....+.++++
T Consensus 38 Lvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 38 LVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp EEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHH
T ss_pred EEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHH
Confidence 4789999999999999999998875 334456666666667664
No 291
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=43.37 E-value=46 Score=23.45 Aligned_cols=39 Identities=8% Similarity=0.080 Sum_probs=33.8
Q ss_pred EEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceE
Q 045158 3 IIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQT 41 (252)
Q Consensus 3 v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~ 41 (252)
+.|-+ +|..+++.+..+++..++=+.++++.|+|.+-..
T Consensus 4 L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 4 LRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 44544 8999999999999999999999999999987654
No 292
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=43.13 E-value=31 Score=23.77 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 045158 12 FVLEVGLQEPVLEIKRKIEQIF 33 (252)
Q Consensus 12 ~~l~v~~~~tV~~lK~~I~~~~ 33 (252)
+.++++.+.|+.++|..+.+.-
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A 23 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQA 23 (78)
T ss_pred eeEEccccccHHHHHHHHHHHH
Confidence 5689999999999999987653
No 293
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=42.74 E-value=12 Score=33.29 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=44.7
Q ss_pred ccCCceEEEEec-CCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCcccc
Q 045158 180 LLNGASIPLEMQ-DSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLR 230 (252)
Q Consensus 180 ~~~g~~~~l~v~-~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~ 230 (252)
...|..+...+. .+..+..||+++.+..+++...|.+.+.|..+.|+++++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCcccccc
Confidence 467888888777 778999999999999999999999999999888886664
No 294
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=41.47 E-value=85 Score=22.25 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=33.2
Q ss_pred CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEE-EEECcee
Q 045158 93 SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRML-LFFSGIE 132 (252)
Q Consensus 93 g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~-L~~~g~~ 132 (252)
.+.+.+.|++..|=.++|+.|+..+|+++...+ +...|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 457899999999999999999999999988765 4455543
No 295
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=41.08 E-value=88 Score=21.32 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=25.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCC
Q 045158 9 GHEFVLEVGLQEPVLEIKRKIEQIFNIP 36 (252)
Q Consensus 9 g~~~~l~v~~~~tV~~lK~~I~~~~~i~ 36 (252)
+..-+|.|+.++|..++-..+.+++++.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 5667899999999999999999999988
No 296
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=39.83 E-value=1.1e+02 Score=21.47 Aligned_cols=31 Identities=13% Similarity=0.092 Sum_probs=27.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCC
Q 045158 8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPAT 38 (252)
Q Consensus 8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~ 38 (252)
.|.+-+|.|+..+|+.++=+.+..+.+....
T Consensus 11 Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~ 41 (85)
T cd01787 11 DGASKSLEVDERMTARDVCQLLVDKNHCQDD 41 (85)
T ss_pred CCCeeEEEEcCCCcHHHHHHHHHHHhCCCCC
Confidence 8999999999999999999999999876543
No 297
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=38.88 E-value=1.3e+02 Score=20.93 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=36.0
Q ss_pred EEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCc-eEEEEc
Q 045158 2 RIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATS-QTLAVS 45 (252)
Q Consensus 2 ~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~-q~L~~~ 45 (252)
++.+.++|..+...++++.|-++|.+++.+....+..+ ..+.|-
T Consensus 2 ~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~ 46 (83)
T cd06404 2 RVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWI 46 (83)
T ss_pred eEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 45566799999999999999999999999999887643 455554
No 298
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.80 E-value=21 Score=32.95 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=45.3
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccC
Q 045158 13 VLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKE 63 (252)
Q Consensus 13 ~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~ 63 (252)
.++.+..-|=.++...|++++||+.+.-+.+-+|+.|.-..||.+-|++.+
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~n 103 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKIN 103 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhh
Confidence 456667777889999999999999999999999999999999999999744
No 299
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=37.95 E-value=15 Score=24.54 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=16.3
Q ss_pred CCccccccCCCCCCEEEEe
Q 045158 225 DNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 225 d~~tL~~y~I~~gsti~l~ 243 (252)
=...|..-|+++||||.+-
T Consensus 45 v~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHHcCCCCCCEEEEc
Confidence 3478999999999999874
No 300
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=37.45 E-value=20 Score=23.94 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=21.7
Q ss_pred ecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158 190 MQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 190 v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~ 243 (252)
.+..+.+..+.+.+... -=...|...|+++||||.+-
T Consensus 27 ~~~~e~~~rf~~~L~~~-----------------Gv~~~L~~~G~~~GD~V~Ig 63 (69)
T PF09269_consen 27 FDDEESLRRFQRKLKKM-----------------GVEKALRKAGAKEGDTVRIG 63 (69)
T ss_dssp E-TGGGHHHHHHHHHHT-----------------THHHHHHTTT--TT-EEEET
T ss_pred CCCHHHHHHHHHHHHHC-----------------CHHHHHHHcCCCCCCEEEEc
Confidence 34445666666666432 23468899999999999874
No 301
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=36.99 E-value=83 Score=22.19 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=34.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCCCCce-EEEEcCeec
Q 045158 9 GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQ-TLAVSGWEL 49 (252)
Q Consensus 9 g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q-~L~~~g~~L 49 (252)
...+++.|++..|=.++|+.|+..+|+++..- .+.+.|+.-
T Consensus 20 ~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~k 61 (91)
T PF00276_consen 20 PNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKK 61 (91)
T ss_dssp SSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEE
T ss_pred CCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCce
Confidence 36789999999999999999999999998764 455777743
No 302
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=36.44 E-value=94 Score=21.66 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=41.9
Q ss_pred EEecCCCcHHHHHHHHhhcCCCC-------CCceEEeecCe-eecC------CccccccCCCCCCEEEEecCeec
Q 045158 188 LEMQDSSTVNELRHLLLSSKILP-------REDYIFIHKQR-IMRD------NCSLRWHGVEYGDILYVFKGTVS 248 (252)
Q Consensus 188 l~v~~~~tV~~Lk~~i~~~~gip-------~~~~~l~~~g~-~l~d------~~tL~~y~I~~gsti~l~~~~~~ 248 (252)
++++++.|..++-+.++++..+. ...-.|++.+- .|++ +++|.+- +.+|+.|.+.+..+.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD~~lp 74 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTDPTLP 74 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEETTES
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEECCCCc
Confidence 57889999999999999884332 23345555441 1222 5799999 999999998765543
No 303
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=36.07 E-value=1.5e+02 Score=20.50 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHHHhCCCCCceEEE--EcCeecCCCC
Q 045158 20 EPVLEIKRKIEQIFNIPATSQTLA--VSGWELVDGL 53 (252)
Q Consensus 20 ~tV~~lK~~I~~~~~i~~~~q~L~--~~g~~L~d~~ 53 (252)
.+..+|+.|..+.++++...-+|. -.|..++|+.
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~Ee 56 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEE 56 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHH
Confidence 479999999999999986555554 4688887653
No 304
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=36.00 E-value=74 Score=22.20 Aligned_cols=46 Identities=13% Similarity=0.098 Sum_probs=34.3
Q ss_pred CCeE-EEEEecCCCcHHHHHHHHHHHhCCC-CCceEEEE--cC--eecCCCC
Q 045158 8 NGHE-FVLEVGLQEPVLEIKRKIEQIFNIP-ATSQTLAV--SG--WELVDGL 53 (252)
Q Consensus 8 ~g~~-~~l~v~~~~tV~~lK~~I~~~~~i~-~~~q~L~~--~g--~~L~d~~ 53 (252)
+|.+ -+|.|.|..|+++|=..++.++.+. |+...|++ +| ..|.|+.
T Consensus 11 sgct~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~ 62 (87)
T cd01776 11 SGCTGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDT 62 (87)
T ss_pred CCceeeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCccc
Confidence 4544 4799999999999999999999985 56666663 33 3566653
No 305
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=35.55 E-value=1.6e+02 Score=26.95 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=49.2
Q ss_pred EEEEeCCcEEEEeeCCCccHHHHHHHHHHHh--CCCCccEEEEE----Cce---ecccccccccccCCCCCCEEEEEee
Q 045158 87 IIIKFPSRKFNIDVDRTDTVRSLKEKIHIID--GTPIKRMLLFF----SGI---ELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 87 i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~--gip~~~q~L~~----~g~---~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
+.++-......+++.++++.+-|-.++-... +..+++..+.- .|. .| .++++.+.|+..|..+.|...
T Consensus 3 ~rfRsk~G~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l--~dqt~~dlGL~hGqmLyl~ys 79 (571)
T COG5100 3 FRFRSKEGQRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLL--KDQTPDDLGLRHGQMLYLEYS 79 (571)
T ss_pred EEEecCCCceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecc--cccChhhhccccCcEEEEEec
Confidence 3444334456788999999999998887765 44566655553 233 34 448999999999999999884
No 306
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=35.44 E-value=13 Score=30.63 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=32.6
Q ss_pred CcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccc----cccCCCCCCEEE
Q 045158 194 STVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSL----RWHGVEYGDILY 241 (252)
Q Consensus 194 ~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL----~~y~I~~gsti~ 241 (252)
.+...+|+.|+++.|+|+++.-|..+ |-+|.-+ ..-.|+-||+|+
T Consensus 186 ~~L~~~r~~ic~~lg~~~dq~eLSMG---MS~DF~~AIe~Gst~VRvGStIF 234 (244)
T KOG3157|consen 186 QVLVKLRESICKKLGIPADQVELSMG---MSADFLLAIEQGSTNVRVGSTIF 234 (244)
T ss_pred HHHHHHHHHHHHHhCCChHHhhhhcc---cchhHHHHHHhCCceEEeccccc
Confidence 36778999999999999999888765 5555433 334566677764
No 307
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=35.42 E-value=51 Score=22.82 Aligned_cols=30 Identities=33% Similarity=0.466 Sum_probs=20.6
Q ss_pred EEEEe-CCeEEEEEecCCCcHHHHHHHHHHH
Q 045158 3 IIIVA-NGHEFVLEVGLQEPVLEIKRKIEQI 32 (252)
Q Consensus 3 v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~ 32 (252)
+++.+ +|.+|.++|..+.-+..-|..|++.
T Consensus 38 ~iitf~ngatfqvevpgsqhi~sqkk~ierm 68 (102)
T PF01376_consen 38 VIITFKNGATFQVEVPGSQHIDSQKKAIERM 68 (102)
T ss_dssp EEEEETTS-EEEE--SSTTSTTTHHHHHHHH
T ss_pred EEEEecCCcEEEEecCCccchhhhHHHHHHH
Confidence 34566 8999999999999887777776653
No 308
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=35.29 E-value=1e+02 Score=20.97 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=31.8
Q ss_pred CceEEEEecCCCcHHHHHHHHhhcCCCCCCc--eEEeecCeeecCCc
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSSKILPRED--YIFIHKQRIMRDNC 227 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~--~~l~~~g~~l~d~~ 227 (252)
.++...-|-. .+.++|+.+.+++.++|... .+|.-+|.+.+|+.
T Consensus 9 ~r~~k~GV~A-~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEe 54 (74)
T smart00266 9 DRNVRKGVAA-SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEE 54 (74)
T ss_pred CCCeeEEEEc-CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHH
Confidence 3444555554 58999999999999999654 45656888887653
No 309
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=35.05 E-value=1.5e+02 Score=20.18 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=26.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCCC--CCceEE
Q 045158 11 EFVLEVGLQEPVLEIKRKIEQIFNIP--ATSQTL 42 (252)
Q Consensus 11 ~~~l~v~~~~tV~~lK~~I~~~~~i~--~~~q~L 42 (252)
.-++.|++++|+.++-..+.++++++ +....|
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L 51 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCL 51 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEE
Confidence 77899999999999999999999993 333445
No 310
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=34.50 E-value=1.2e+02 Score=20.98 Aligned_cols=34 Identities=24% Similarity=0.187 Sum_probs=25.2
Q ss_pred CcHHHHHHHHHHHhCCCCCc--eEE--EEcCeecCCCC
Q 045158 20 EPVLEIKRKIEQIFNIPATS--QTL--AVSGWELVDGL 53 (252)
Q Consensus 20 ~tV~~lK~~I~~~~~i~~~~--q~L--~~~g~~L~d~~ 53 (252)
.|..+|+.|..++++++... -+| .-.|..++|+.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEe 58 (80)
T cd06536 21 SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDED 58 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHH
Confidence 57999999999999998432 344 34688887653
No 311
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.21 E-value=1.3e+02 Score=25.91 Aligned_cols=71 Identities=13% Similarity=0.316 Sum_probs=53.4
Q ss_pred CcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceecc--cccccccccCCCCCCEEEE
Q 045158 83 DKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELD--DEFRNLSEYGIREFSEIIV 153 (252)
Q Consensus 83 ~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--~d~~~L~~y~i~~~s~i~l 153 (252)
....+-|++ +|+++.-++++..|...++.-|.-..+...+...|+ |--+.+. |-.++|...++.+-+++.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 456888995 899999999999999999999999988766555444 3233332 1236888888888888765
No 312
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=33.26 E-value=1.2e+02 Score=20.77 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=26.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCCCC
Q 045158 9 GHEFVLEVGLQEPVLEIKRKIEQIFNIPAT 38 (252)
Q Consensus 9 g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~ 38 (252)
+...+|.|++++|..++-..+.++++++..
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 566789999999999999999999999753
No 313
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=33.25 E-value=24 Score=23.70 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=12.9
Q ss_pred cccCCCCCCEEEEecC
Q 045158 230 RWHGVEYGDILYVFKG 245 (252)
Q Consensus 230 ~~y~I~~gsti~l~~~ 245 (252)
..+.+++|||+|+|+.
T Consensus 8 ksi~LkDGstvyiFKD 23 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKD 23 (73)
T ss_dssp EEEEBTTSEEEEEETT
T ss_pred eeEecCCCCEEEEEcC
Confidence 4567899999999953
No 314
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=31.79 E-value=1.8e+02 Score=20.30 Aligned_cols=45 Identities=7% Similarity=0.035 Sum_probs=35.6
Q ss_pred EEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCc-cEEEEECce
Q 045158 87 IIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIK-RMLLFFSGI 131 (252)
Q Consensus 87 i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~-~q~L~~~g~ 131 (252)
+.+.+.|..+...++++.|-..|.+++.+....+.. ...+.|...
T Consensus 3 ~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DE 48 (83)
T cd06404 3 VKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDE 48 (83)
T ss_pred EEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECC
Confidence 444568888889999999999999999999988654 456666443
No 315
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=31.53 E-value=1.3e+02 Score=20.68 Aligned_cols=55 Identities=25% Similarity=0.216 Sum_probs=31.3
Q ss_pred cCCCcHHHHHHHHhhcCC---CCCC--ceEEeecCeeecCCccccccCCCCCCEEEEecCeecCC
Q 045158 191 QDSSTVNELRHLLLSSKI---LPRE--DYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG 250 (252)
Q Consensus 191 ~~~~tV~~Lk~~i~~~~g---ip~~--~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~ 250 (252)
..-+||++|++++.++.. .-.. ......+.+.+.+ .++-+++||+|.+++ .++||
T Consensus 25 ~~~~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~t~L~dGDeVa~~P-PVsGG 84 (84)
T COG1977 25 TVGATVGELEELLPKEGERWLLALEDNIVVNAANNEFLVG----LDTPLKDGDEVAFFP-PVSGG 84 (84)
T ss_pred cHHHHHHHHHHHHHhhhhhHHhccCccceEEeeeceeecc----ccccCCCCCEEEEeC-CCCCC
Confidence 335799999999855432 2111 1122222233333 245789999999874 45554
No 316
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=31.46 E-value=1.5e+02 Score=20.43 Aligned_cols=34 Identities=12% Similarity=0.109 Sum_probs=24.5
Q ss_pred CcHHHHHHHHHHHhCCCCC-ceEEEEcCeecCCCC
Q 045158 20 EPVLEIKRKIEQIFNIPAT-SQTLAVSGWELVDGL 53 (252)
Q Consensus 20 ~tV~~lK~~I~~~~~i~~~-~q~L~~~g~~L~d~~ 53 (252)
.|..+|+.|..++++++.. ...|.-.|..++|+.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~Ee 55 (79)
T cd06538 21 DSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEE 55 (79)
T ss_pred CCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHH
Confidence 5799999999999999632 133334688887653
No 317
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=30.78 E-value=1.3e+02 Score=20.54 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=28.8
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHhCCCCccEE
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRML 125 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~ 125 (252)
+.+.+.|++..|=.++|+.|+..+|+.+...+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vn 46 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVN 46 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEE
Confidence 57899999999999999999999999877655
No 318
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=30.74 E-value=1.4e+02 Score=20.59 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=31.7
Q ss_pred CceEEEEecCCCcHHHHHHHHhhcCCCCCCc--eEEeecCeeecCCc
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSSKILPRED--YIFIHKQRIMRDNC 227 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~--~~l~~~g~~l~d~~ 227 (252)
.++...-|-. .+.++|+.+.+++.++|... .+|.-+|.+.+|+.
T Consensus 11 ~r~~k~GV~A-~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEe 56 (78)
T cd01615 11 DRSRKKGVAA-SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEE 56 (78)
T ss_pred CCCeeEEEEc-CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHH
Confidence 4555555554 48999999999999997544 45656888886653
No 319
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=30.63 E-value=58 Score=24.95 Aligned_cols=64 Identities=19% Similarity=0.165 Sum_probs=41.6
Q ss_pred EEEeeCCCccHHHHHHHHHHH------hCCCCccEEEE-----------------ECceecccccccccccCCCCCCEEE
Q 045158 96 FNIDVDRTDTVRSLKEKIHII------DGTPIKRMLLF-----------------FSGIELDDEFRNLSEYGIREFSEII 152 (252)
Q Consensus 96 ~~l~v~~~~TV~~lK~~I~~~------~gip~~~q~L~-----------------~~g~~L~~d~~~L~~y~i~~~s~i~ 152 (252)
+.+--.-++|..+|-..|.+- .|...+ ...+ ..|+.+-||+.+|+..+++-|+-|.
T Consensus 54 lQiYtW~datL~ELtsLvkevnpeaR~kgt~f~-fa~Vf~d~~~~~y~~RevG~t~~g~Kg~ddnktL~~~kf~iGD~lD 132 (151)
T KOG3391|consen 54 LQIYTWMDATLRELTSLVKEVNPEARKKGTSFD-FAVVFPDKKSPRYIVREVGTTCLGRKGIDDNKTLQQTKFEIGDYLD 132 (151)
T ss_pred eeEeehhhhhHHHHHHHHHHcCHHHhccCceEE-EEEEeccCCCCCceeeeecccccCcccCCccchhhhCCccccceEE
Confidence 334445577888888888652 132111 1111 2344444799999999999999999
Q ss_pred EEeeeccc
Q 045158 153 VFLKTMNR 160 (252)
Q Consensus 153 l~~~~~~~ 160 (252)
+.++|.+|
T Consensus 133 VaI~~p~~ 140 (151)
T KOG3391|consen 133 VAITPPNR 140 (151)
T ss_pred EEecCccc
Confidence 99987543
No 320
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=30.55 E-value=1.9e+02 Score=20.25 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=28.1
Q ss_pred CCcEEEEeeCCCccHHHHHHHHHHHhCCCCcc
Q 045158 92 PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKR 123 (252)
Q Consensus 92 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~ 123 (252)
+|.+..+.|+...|++++-+.+.++.....+.
T Consensus 11 Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~ 42 (85)
T cd01787 11 DGASKSLEVDERMTARDVCQLLVDKNHCQDDS 42 (85)
T ss_pred CCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCC
Confidence 68889999999999999999999999875544
No 321
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=29.99 E-value=1.1e+02 Score=21.57 Aligned_cols=40 Identities=30% Similarity=0.469 Sum_probs=33.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCCCCceE-EEEcCee
Q 045158 9 GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQT-LAVSGWE 48 (252)
Q Consensus 9 g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~-L~~~g~~ 48 (252)
...+++.|++..|=.++|+.++..+|+++..-+ +...|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 568999999999999999999999999987743 4566654
No 322
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=29.48 E-value=2.6e+02 Score=21.88 Aligned_cols=110 Identities=15% Similarity=0.238 Sum_probs=62.1
Q ss_pred eCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCCCCccccceeeEEeeee
Q 045158 100 VDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSS 179 (252)
Q Consensus 100 v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~~~~~~~~~i~v~~~~~ 179 (252)
.-.-+|...|=..|.+..|| .+.+..|-.|. .. --||-..|.-+.-..+..-+..| ..+...|+.
T Consensus 10 ~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LP-k~---VpyGPa~G~pv~h~~Rk~I~V~g----~~veL~V~v--- 74 (153)
T PF02505_consen 10 LLKPETTEKLLNELYSIEGI----RRVVIHGPRLP-KT---VPYGPARGTPVNHPDRKVINVGG----EEVELTVKV--- 74 (153)
T ss_pred cCCHHHHHHHHHHHhccCCE----EEEEEECCCCC-CC---CCCCCCCCCcCCCCcceEEEECC----EEEEEEEEE---
Confidence 33456888888888887776 57777887774 21 24454434321111100000001 113333332
Q ss_pred ccCCceEEEEecC-CCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCcccccc
Q 045158 180 LLNGASIPLEMQD-SSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWH 232 (252)
Q Consensus 180 ~~~g~~~~l~v~~-~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y 232 (252)
..+-+++.. .+.++.+++.+++.. | -.|.+ ..|+-+....|+.||
T Consensus 75 ----Gri~lele~~~~~ie~I~~iCee~l--p-f~y~i-~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 75 ----GRIILELEDEEDVIEKIREICEEVL--P-FGYDI-KEGKFIRTKPTVTDY 120 (153)
T ss_pred ----eEEEEEecCcHHHHHHHHHHHHHhC--C-CceEe-eeeEEeccCCchhhh
Confidence 345577777 788888888888765 3 22322 357788888888887
No 323
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=28.92 E-value=98 Score=24.35 Aligned_cols=27 Identities=33% Similarity=0.609 Sum_probs=23.7
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHH
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKR 27 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~ 27 (252)
|.|.++.+|+.+.+++.|..++.++=.
T Consensus 2 ~~i~ltvNG~~~~~~~~p~~~Ll~~LR 28 (156)
T COG2080 2 MPITLTVNGEPVELDVDPRTPLLDVLR 28 (156)
T ss_pred CcEEEEECCeEEEEEeCCCChHHHHHH
Confidence 677888999999999999999988754
No 324
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=28.66 E-value=1.6e+02 Score=20.61 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=29.1
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHhCCCCccEE
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRML 125 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~ 125 (252)
+.+.+.|++..|=.++|+.|+..+|+.+...+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~Vn 53 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVN 53 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEE
Confidence 57899999999999999999999999887765
No 325
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=28.50 E-value=1.7e+02 Score=23.06 Aligned_cols=63 Identities=8% Similarity=0.056 Sum_probs=44.3
Q ss_pred CceEEEEecCCCcHHHHHHHHhhcCCCCCCce-EEeecCeee--------cCCccccccCCCCCCEEEEecC
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSSKILPREDY-IFIHKQRIM--------RDNCSLRWHGVEYGDILYVFKG 245 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~-~l~~~g~~l--------~d~~tL~~y~I~~gsti~l~~~ 245 (252)
...+.+.|++..+=.++|+.|+..+|+.+... .+...|+.- ..+..-+.--+.+|++|-+|.+
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~KR~g~~~G~~~~~KKAiVtL~~g~~I~~f~~ 93 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPKRLGRFPGFTNSYKKAYVTLAEGYSINLFPE 93 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCcccccCCcccccCCcEEEEEECCCCCEeeccCC
Confidence 35788999999999999999999999988765 333333211 1233444455678888887754
No 326
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=28.48 E-value=70 Score=18.10 Aligned_cols=19 Identities=32% Similarity=0.235 Sum_probs=13.8
Q ss_pred CCcHHHHHHHHhhcCCCCCC
Q 045158 193 SSTVNELRHLLLSSKILPRE 212 (252)
Q Consensus 193 ~~tV~~Lk~~i~~~~gip~~ 212 (252)
..||.+||+.+.+. |+|..
T Consensus 3 ~l~v~eLk~~l~~~-gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKER-GLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHT-TS-ST
T ss_pred cCcHHHHHHHHHHC-CCCCC
Confidence 46899999988765 77654
No 327
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=28.32 E-value=2e+02 Score=19.60 Aligned_cols=24 Identities=25% Similarity=0.108 Sum_probs=17.5
Q ss_pred EEEeeCC-CccHHHHHHHHHHHhCC
Q 045158 96 FNIDVDR-TDTVRSLKEKIHIIDGT 119 (252)
Q Consensus 96 ~~l~v~~-~~TV~~lK~~I~~~~gi 119 (252)
-.+.++. ..+|.+||+.|.++.++
T Consensus 12 ~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 12 DTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp EEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred cEEEECCCeeEHHHHHHHHHHHhCC
Confidence 4455554 77999999999877665
No 328
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=28.25 E-value=1.3e+02 Score=22.23 Aligned_cols=57 Identities=14% Similarity=-0.066 Sum_probs=37.5
Q ss_pred EEeeCCCccHHHHHHHHHHHhCCCCccEE-EEECceecccccccccc----cCCCCCCEEEEEe
Q 045158 97 NIDVDRTDTVRSLKEKIHIIDGTPIKRML-LFFSGIELDDEFRNLSE----YGIREFSEIIVFL 155 (252)
Q Consensus 97 ~l~v~~~~TV~~lK~~I~~~~gip~~~q~-L~~~g~~L~~d~~~L~~----y~i~~~s~i~l~~ 155 (252)
.+-|+.+.||+++...|..+..+++++-. |+.++.... .+.++++ |+-. +.-+++..
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~-~~~~~~~lY~~~kd~-DGfLyl~Y 105 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPP-TSATMSQLYEEHKDE-DGFLYMTY 105 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCC-chhHHHHHHHHhCCC-CCEEEEEE
Confidence 34589999999999999999998877644 445664333 4455543 3332 34555544
No 329
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=27.86 E-value=2.2e+02 Score=19.99 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=46.4
Q ss_pred EEEEEeCCc--EEEEeeCCCccHHHHHHHHHHHh-CC--CC--c-cEEEEECc--eecccccccccccCCCCCCEEEEEe
Q 045158 86 HIIIKFPSR--KFNIDVDRTDTVRSLKEKIHIID-GT--PI--K-RMLLFFSG--IELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 86 ~i~v~~~g~--~~~l~v~~~~TV~~lK~~I~~~~-gi--p~--~-~q~L~~~g--~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.|..++.|. ..-+.|+..+|+.++-++++.+. |. ++ . ..++..+| ..+. .+.++++-||.+-..|.+..
T Consensus 5 Pl~~~F~gDFv~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p-~~~tVaeagl~P~e~vev~~ 83 (85)
T PF06234_consen 5 PLTANFEGDFVLQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFP-RSMTVAEAGLQPMEWVEVRF 83 (85)
T ss_dssp EEEEEETT-SBEEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE--TT-BGGGHT--TTEEEEEEE
T ss_pred ceeEeeccceEEEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCC-CccEehhcCCCcceEEEEEE
Confidence 344555453 35678999999999999999876 53 32 2 45666788 7885 88999999999998888765
No 330
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=27.81 E-value=1.7e+02 Score=21.39 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=26.4
Q ss_pred EEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCC
Q 045158 3 IIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPA 37 (252)
Q Consensus 3 v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~ 37 (252)
++|.. +|.+-+|.|..=-+-.++|.++-+++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 34444 899999999999999999999999999987
No 331
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=26.67 E-value=1.4e+02 Score=20.56 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=30.1
Q ss_pred EEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCC
Q 045158 3 IIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPA 37 (252)
Q Consensus 3 v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~ 37 (252)
+.+..+|+.+.+.++.+.++.-+-.+...+.+.++
T Consensus 3 ~~~~Ing~~i~~lvDTGA~~svis~~~~~~lg~~~ 37 (91)
T cd05484 3 VTLLVNGKPLKFQLDTGSAITVISEKTWRKLGSPP 37 (91)
T ss_pred EEEEECCEEEEEEEcCCcceEEeCHHHHHHhCCCc
Confidence 45667999999999999999999999988888664
No 332
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=25.77 E-value=83 Score=23.42 Aligned_cols=29 Identities=14% Similarity=0.394 Sum_probs=24.2
Q ss_pred EEEEEEeCCcEEEEeeCCCccHHHHHHHH
Q 045158 85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKI 113 (252)
Q Consensus 85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I 113 (252)
|+|.+.+.++.+..+...+.|..+|.+++
T Consensus 1 mkI~i~i~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITIGGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEETTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEECCEEEEEEECCCHHHHHHHHhC
Confidence 67888888999999999998988888765
No 333
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=25.72 E-value=79 Score=21.25 Aligned_cols=36 Identities=17% Similarity=0.069 Sum_probs=22.3
Q ss_pred CCCCCCceEEeecCeeecCCcccccc--CCCCCCEEEE
Q 045158 207 KILPREDYIFIHKQRIMRDNCSLRWH--GVEYGDILYV 242 (252)
Q Consensus 207 ~gip~~~~~l~~~g~~l~d~~tL~~y--~I~~gsti~l 242 (252)
-|+.+.+..+..+|+...+...|..+ .-++|+++.|
T Consensus 30 aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l 67 (82)
T PF13180_consen 30 AGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTL 67 (82)
T ss_dssp TTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEE
T ss_pred CCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEE
Confidence 46777777777777776655555433 4567776665
No 334
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=25.42 E-value=2.7e+02 Score=20.19 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=33.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHh----C--CCCC-ceEEEEcCe--ecCCCCCccccc
Q 045158 8 NGHEFVLEVGLQEPVLEIKRKIEQIF----N--IPAT-SQTLAVSGW--ELVDGLDMEDYP 59 (252)
Q Consensus 8 ~g~~~~l~v~~~~tV~~lK~~I~~~~----~--i~~~-~q~L~~~g~--~L~d~~~L~~~~ 59 (252)
....+++.+++++|+.++.+.+-.+. + -+++ +..|--.|+ -|..+..|.+|.
T Consensus 27 ~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~ 87 (108)
T smart00144 27 DQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFE 87 (108)
T ss_pred CceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechH
Confidence 35779999999999999988766551 1 1222 344555564 355566666665
No 335
>PLN03111 DNA-directed RNA polymerase II subunit family protein; Provisional
Probab=24.23 E-value=81 Score=26.03 Aligned_cols=123 Identities=18% Similarity=0.237 Sum_probs=65.6
Q ss_pred CccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCCCCccccceeeEEeeeeccC
Q 045158 103 TDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLN 182 (252)
Q Consensus 103 ~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~~~~~~~~~i~v~~~~~~~~ 182 (252)
.-.|..+|.-+.....-...+-.|++.+..-.--...+... .+.-.|.++.- -.+.|.+
T Consensus 77 kvgvk~ir~~~~~~~~e~~~r~IlV~q~~itp~A~~~i~~~--~~~~~iE~F~e-------------~eLlvni------ 135 (206)
T PLN03111 77 KVGVKTIKTYAERMKDENVSRAILVLQSKLTPFAKQALSEF--NSKFKIEVFQE-------------TELLVNI------ 135 (206)
T ss_pred ccCHHHHHHHHHHHhhcCcceEEEEECCCCCHHHHHHHHhh--CcCceEEEeeh-------------hHheecc------
Confidence 46788888888766666677777777764321111223333 12333443321 0111111
Q ss_pred CceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCCC
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGGY 252 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~~ 252 (252)
-+...+.-+.-.+-++- +.+-+++++-.++. -+.+.+|---.+||.++|+.|-+...+-+.|.|
T Consensus 136 t~H~lVPkH~~ls~eEk-~~lL~~y~i~~~qL-----PrI~~~DPvary~g~k~G~vvkI~R~S~taG~~ 199 (206)
T PLN03111 136 TKHVLVPKHQVLTDEEK-KTLLKRYTVKETQL-----PRIQVSDPIARYYGLKRGQVVKIIRPSETAGRY 199 (206)
T ss_pred ccceecCCeEEcCHHHH-HHHHHHcCCCHHHC-----CcccccChhhHhcCCCCCCEEEEEECCCCCCCc
Confidence 01111111111243433 34444556544443 134567777889999999999999888787765
No 336
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=23.79 E-value=1.7e+02 Score=19.99 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=29.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCCCCceE
Q 045158 9 GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQT 41 (252)
Q Consensus 9 g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~ 41 (252)
...+++.|++..|=.++|+.|+..+++.+..-+
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vn 46 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVN 46 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEE
Confidence 367999999999999999999999999876543
No 337
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.44 E-value=2.3e+02 Score=24.53 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=48.0
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeeec---CCccccccCCCCCCEEEE
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIMR---DNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l~---d~~tL~~y~I~~gsti~l 242 (252)
+..|+++.-+..+..|...+|..+....|.-.+.|.|. |-.+.+- ..++|...++-+-+++.+
T Consensus 217 l~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 217 LPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 45799999999999999999999999987766655443 3333333 336899999988887765
No 338
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=23.22 E-value=1.7e+02 Score=20.65 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=23.0
Q ss_pred EEEecCCCcHHHHHHHHhhcCCCCCCc-eEEeecC
Q 045158 187 PLEMQDSSTVNELRHLLLSSKILPRED-YIFIHKQ 220 (252)
Q Consensus 187 ~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~~g 220 (252)
.+.|..++|++.+-.-++.+.++...+ .+++.++
T Consensus 19 k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~ 53 (87)
T PF04110_consen 19 KFKISASQTFATVIAFLRKKLKLKPSDSLFLYINN 53 (87)
T ss_dssp EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEE
T ss_pred EEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcC
Confidence 467888999999999999999986655 4554444
No 339
>CHL00030 rpl23 ribosomal protein L23
Probab=22.96 E-value=2.1e+02 Score=20.41 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=29.1
Q ss_pred CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEE
Q 045158 93 SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRML 125 (252)
Q Consensus 93 g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~ 125 (252)
.+.+.+.|+...|=.++|+.|+..+|+.+....
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VN 51 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVN 51 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 467899999999999999999999999777654
No 340
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=22.94 E-value=2e+02 Score=20.62 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=31.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCCCCceE-EEEcC
Q 045158 9 GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQT-LAVSG 46 (252)
Q Consensus 9 g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~-L~~~g 46 (252)
...+++.|++..|=.++|..+++.+|+-+..-+ |...|
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~ 59 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKG 59 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCC
Confidence 467899999999999999999999999887654 33444
No 341
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=22.77 E-value=1.1e+02 Score=20.94 Aligned_cols=50 Identities=16% Similarity=0.108 Sum_probs=37.4
Q ss_pred HHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCe
Q 045158 197 NELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGT 246 (252)
Q Consensus 197 ~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~ 246 (252)
..+|..++...|.+.+..++..+...=.-...+..-.+.-|+.|++-+|.
T Consensus 4 ~~~r~~~e~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G~~I~f~~g~ 53 (79)
T PF13699_consen 4 ESIRSRLERAFGADLSDVRVHTGPAASRAAAALGARAFTVGNDIYFAPGK 53 (79)
T ss_pred HHHHHHHHHHhCCCccceEEEeCCchhhhhhccCCeEEEECCEEEEcCCC
Confidence 35889999999999999999877533333456666667889999996554
No 342
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=22.64 E-value=1.7e+02 Score=19.88 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhC
Q 045158 10 HEFVLEVGLQEPVLEIKRKIEQIFN 34 (252)
Q Consensus 10 ~~~~l~v~~~~tV~~lK~~I~~~~~ 34 (252)
+.|-.-..|+.|+.+|+..|.+++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~ 27 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFK 27 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHH
Confidence 4455668899999999999999875
No 343
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=22.58 E-value=1.9e+02 Score=20.15 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=29.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCCCCceE
Q 045158 9 GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQT 41 (252)
Q Consensus 9 g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~ 41 (252)
...+++.|++..+=.++|+.|+..+|+.+..-+
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~Vn 53 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVN 53 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEE
Confidence 468999999999999999999999999886543
No 344
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=22.36 E-value=2.8e+02 Score=19.28 Aligned_cols=53 Identities=13% Similarity=0.023 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHHHhCCCCCceEEE--EcCeecCCCCCccccccccCCcEEEEEecCCCCc
Q 045158 20 EPVLEIKRKIEQIFNIPATSQTLA--VSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQS 77 (252)
Q Consensus 20 ~tV~~lK~~I~~~~~i~~~~q~L~--~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~~~ 77 (252)
.+..+|+.|..+.++++.. -+|. -.|..++|+.=... +. ++| ..+.+.+...|
T Consensus 21 ~sL~EL~~K~~~~L~~~~~-~~lvLeeDGT~Vd~EeyF~t--Lp-dnT-~lm~L~~gq~W 75 (81)
T cd06537 21 ASLQELLAKALETLLLSGV-LTLVLEEDGTAVDSEDFFEL--LE-DDT-CLMVLEQGQSW 75 (81)
T ss_pred cCHHHHHHHHHHHhCCCCc-eEEEEecCCCEEccHHHHhh--CC-CCC-EEEEECCCCcc
Confidence 4789999999999999733 4443 46788776532221 22 446 34444444444
No 345
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=22.15 E-value=70 Score=28.28 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=38.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHhC-CC-CCceEEEEcCeecCCCCCcccc
Q 045158 12 FVLEVGLQEPVLEIKRKIEQIFN-IP-ATSQTLAVSGWELVDGLDMEDY 58 (252)
Q Consensus 12 ~~l~v~~~~tV~~lK~~I~~~~~-i~-~~~q~L~~~g~~L~d~~~L~~~ 58 (252)
-.+.++...||.+||..+..+.+ .+ ..+.-+++++..|.+..||.+.
T Consensus 166 ~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i 214 (331)
T KOG2660|consen 166 RFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDI 214 (331)
T ss_pred ceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhh
Confidence 35778889999999999999998 44 4455778888899999888854
No 346
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=22.15 E-value=2.7e+02 Score=19.08 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=35.0
Q ss_pred EEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCe
Q 045158 2 RIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGW 47 (252)
Q Consensus 2 ~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~ 47 (252)
+|.+-+.|+..-+....--...|+.+++...+|.+.+ |.|-.+
T Consensus 2 RiKfE~~gEKRIi~f~RPvkf~dl~~kv~~afGq~md---l~ytn~ 44 (79)
T cd06405 2 RIKFEHNGEKRIIQFPRPVKFKDLQQKVTTAFGQPMD---LHYTNN 44 (79)
T ss_pred eEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee---EEEecc
Confidence 3444568999999999999999999999999998754 666554
No 347
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=21.58 E-value=2.5e+02 Score=20.01 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=36.1
Q ss_pred EEEEe--CCeEEEEEecCCCcHHHHHHHHHHH--hCCCC---C-ceEEEEcCe--ecCCCCCccccc
Q 045158 3 IIIVA--NGHEFVLEVGLQEPVLEIKRKIEQI--FNIPA---T-SQTLAVSGW--ELVDGLDMEDYP 59 (252)
Q Consensus 3 v~v~~--~g~~~~l~v~~~~tV~~lK~~I~~~--~~i~~---~-~q~L~~~g~--~L~d~~~L~~~~ 59 (252)
|.|.. .+..+++.++.++|+.++-+.+-.+ .+..+ . +..|--.|+ -|..+..|.+|.
T Consensus 19 v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~ 85 (106)
T PF00794_consen 19 VSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYE 85 (106)
T ss_dssp EEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBH
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccH
Confidence 44444 5788999999999999998887666 22221 1 345555664 466777888886
No 348
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=21.51 E-value=1.3e+02 Score=16.86 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=14.1
Q ss_pred CCcHHHHHHHHhhcCCCCCC
Q 045158 193 SSTVNELRHLLLSSKILPRE 212 (252)
Q Consensus 193 ~~tV~~Lk~~i~~~~gip~~ 212 (252)
..||.+||+.+.+. |+|..
T Consensus 3 ~l~~~~Lk~~l~~~-gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKR-GLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHc-CCCCC
Confidence 46899999888654 77754
No 349
>KOG4261 consensus Talin [Cytoskeleton]
Probab=21.01 E-value=4.8e+02 Score=26.29 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=74.0
Q ss_pred EEeCCeEEEEEecCCCcHHHHHHHHHHHhC---CCCCceEEEE------cCeecCCCCCccccccccCCcEEEEEecCCC
Q 045158 5 IVANGHEFVLEVGLQEPVLEIKRKIEQIFN---IPATSQTLAV------SGWELVDGLDMEDYPIVKEGTKIDLTINPFL 75 (252)
Q Consensus 5 v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~---i~~~~q~L~~------~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~ 75 (252)
|...+-.-++...|+.+|.|-=..|.+++- .-+....|+. .|-.|+...+|.+|-+.+.++ +.
T Consensus 8 i~~~~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~-~e------- 79 (1003)
T KOG4261|consen 8 ISSANVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDT-LE------- 79 (1003)
T ss_pred EEecceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccc-cc-------
Confidence 333566678899999999998777776653 1244555553 366788888999998876665 31
Q ss_pred CccCCcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCC
Q 045158 76 QSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTP 120 (252)
Q Consensus 76 ~~~~~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip 120 (252)
.+ ...-...|+ +.|..-++-|+.+.+|.+|---|..+.||.
T Consensus 80 ---y~-~k~r~lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 80 ---YK-RKQRPLKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred ---hh-hhcccceeeecccccceeeecccccHHHHHHHHHhccCcc
Confidence 11 111235667 678788888999999999999999998884
No 350
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=20.78 E-value=2.5e+02 Score=19.10 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=39.9
Q ss_pred EEeeCCCccHHHHHHHHHHHhCCCCccEEEEE-CceecccccccccccCCCCCCEEEEE
Q 045158 97 NIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF-SGIELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 97 ~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~-~g~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
.+.|..+.....+-+-.++.+.+|+..--++. .|.-. +.+.+-.+--++.|+.+.|+
T Consensus 19 v~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GI-nP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 19 VISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGI-NPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE--TTSBHHHHHHHT-SEEEEE
T ss_pred EEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCccc-ccchhhhhhHhhcCcEeeeC
Confidence 35666666666666677778999988877765 55566 48888888888899988874
No 351
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=20.33 E-value=1.7e+02 Score=23.17 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.0
Q ss_pred EEEEEeCCeEEEEEecCCCcHHHHHHH
Q 045158 2 RIIIVANGHEFVLEVGLQEPVLEIKRK 28 (252)
Q Consensus 2 ~v~v~~~g~~~~l~v~~~~tV~~lK~~ 28 (252)
.|.++.+|+.+.++++|..+..++=..
T Consensus 8 ~i~~~vNG~~~~~~~~~~~~Ll~~LR~ 34 (159)
T PRK09908 8 TIECTINGMPFQLHAAPGTPLSELLRE 34 (159)
T ss_pred eEEEEECCEEEEEecCCCCcHHHHHHH
Confidence 456677999999999999999988664
No 352
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=20.19 E-value=2.2e+02 Score=19.90 Aligned_cols=34 Identities=3% Similarity=0.088 Sum_probs=26.6
Q ss_pred EEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCe
Q 045158 14 LEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGW 47 (252)
Q Consensus 14 l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~ 47 (252)
.-|+.+.|++++...|.++.++++++--.+|-+.
T Consensus 20 flv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn 53 (87)
T cd01612 20 FKISATQSFQAVIDFLRKRLKLKASDSLFLYINN 53 (87)
T ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECC
Confidence 4589999999999999999998877644444443
Done!