Query 045158
Match_columns 252
No_of_seqs 281 out of 2077
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 18:20:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 5.3E-36 1.8E-40 237.2 20.9 152 1-165 3-158 (159)
2 3u30_A Ubiquitin, linear DI-ub 100.0 2.9E-35 9.8E-40 235.9 18.8 150 1-164 21-172 (172)
3 3rt3_B Ubiquitin-like protein 100.0 4.5E-35 1.6E-39 231.8 18.7 153 85-251 3-158 (159)
4 3u30_A Ubiquitin, linear DI-ub 100.0 1E-34 3.5E-39 232.7 19.3 151 80-244 16-167 (172)
5 3b08_A Polyubiquitin-C, ubiqui 100.0 2E-33 6.7E-38 220.4 21.1 150 1-164 1-152 (152)
6 3b08_A Polyubiquitin-C, ubiqui 100.0 5.1E-32 1.7E-36 212.3 19.9 146 85-244 1-147 (152)
7 3plu_A Ubiquitin-like modifier 99.8 3.1E-19 1.1E-23 126.1 10.0 76 79-155 16-92 (93)
8 3phx_B Ubiquitin-like protein 99.8 7.7E-19 2.6E-23 122.2 11.1 72 83-155 3-75 (79)
9 2kdi_A Ubiquitin, vacuolar pro 99.8 3E-20 1E-24 138.4 3.4 107 81-198 6-113 (114)
10 3plu_A Ubiquitin-like modifier 99.8 4.4E-19 1.5E-23 125.4 9.1 69 1-70 22-91 (93)
11 4fbj_B NEDD8; effector-HOST ta 99.8 7.6E-19 2.6E-23 124.9 9.5 77 85-166 1-78 (88)
12 2kk8_A Uncharacterized protein 99.8 1.6E-18 5.3E-23 122.1 8.7 72 1-73 11-84 (84)
13 3dbh_I NEDD8; cell cycle, acti 99.8 5E-18 1.7E-22 120.4 10.0 79 81-164 9-88 (88)
14 2kk8_A Uncharacterized protein 99.8 4.3E-18 1.5E-22 119.8 9.4 74 82-156 8-83 (84)
15 2kan_A Uncharacterized protein 99.8 9E-18 3.1E-22 120.7 11.3 82 79-165 10-92 (94)
16 3phx_B Ubiquitin-like protein 99.8 4.6E-18 1.6E-22 118.2 9.5 71 1-72 5-76 (79)
17 2lxa_A Ubiquitin-like protein 99.7 2E-18 6.8E-23 122.0 6.9 73 1-74 2-79 (87)
18 1ndd_A NEDD8, protein (ubiquit 99.7 1.3E-17 4.3E-22 114.8 10.4 75 85-164 1-76 (76)
19 3n3k_B Ubiquitin; hydrolase, p 99.7 9.2E-18 3.1E-22 118.2 9.7 77 84-165 3-80 (85)
20 4hcn_B Polyubiquitin, ubiquiti 99.7 9.7E-18 3.3E-22 121.5 9.7 80 80-164 18-98 (98)
21 1wy8_A NP95-like ring finger p 99.7 1.9E-17 6.4E-22 117.7 11.0 80 82-166 5-87 (89)
22 4fbj_B NEDD8; effector-HOST ta 99.7 1.3E-17 4.3E-22 118.5 9.8 72 1-73 1-73 (88)
23 1uh6_A Ubiquitin-like 5; beta- 99.7 3.3E-18 1.1E-22 123.2 6.7 69 1-70 29-98 (100)
24 4eew_A Large proline-rich prot 99.7 1.4E-17 4.7E-22 118.3 9.8 74 80-155 13-87 (88)
25 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 1.8E-17 6E-22 119.6 10.5 77 84-165 1-78 (96)
26 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 2.1E-17 7.2E-22 117.0 10.6 78 82-164 5-83 (87)
27 4dwf_A HLA-B-associated transc 99.7 1.8E-17 6.3E-22 118.1 10.4 73 82-156 3-76 (90)
28 2uyz_B Small ubiquitin-related 99.7 9.9E-18 3.4E-22 116.5 8.7 76 84-164 3-79 (79)
29 2faz_A Ubiquitin-like containi 99.7 2E-17 6.9E-22 114.6 10.1 73 83-156 1-76 (78)
30 1sif_A Ubiquitin; hydrophobic 99.7 1.3E-17 4.4E-22 118.5 9.3 77 83-164 8-85 (88)
31 2l7r_A Ubiquitin-like protein 99.7 1.1E-17 3.8E-22 120.0 8.9 78 81-164 16-93 (93)
32 1uh6_A Ubiquitin-like 5; beta- 99.7 8.6E-18 2.9E-22 121.0 8.3 73 82-155 26-99 (100)
33 3v6c_B Ubiquitin; structural g 99.7 2.4E-17 8.1E-22 117.8 10.5 76 80-156 13-89 (91)
34 3a9j_A Ubiquitin; protein comp 99.7 2.9E-17 1E-21 113.0 10.6 75 85-164 1-76 (76)
35 3mtn_B UBA80, ubcep1, ubiquiti 99.7 2.6E-17 8.8E-22 115.8 10.4 76 84-164 3-79 (85)
36 2lxa_A Ubiquitin-like protein 99.7 5.8E-18 2E-22 119.6 6.9 74 84-158 1-79 (87)
37 1wyw_B Ubiquitin-like protein 99.7 1.6E-17 5.6E-22 120.1 9.3 79 81-164 18-97 (97)
38 2faz_A Ubiquitin-like containi 99.7 2.3E-17 7.7E-22 114.4 9.5 72 1-73 3-77 (78)
39 4a20_A Ubiquitin-like protein 99.7 1.3E-17 4.6E-22 120.3 8.4 73 1-74 20-97 (98)
40 2hj8_A Interferon-induced 17 k 99.7 1.1E-17 3.7E-22 118.8 7.6 77 83-164 3-80 (88)
41 4dwf_A HLA-B-associated transc 99.7 3E-17 1E-21 117.0 9.4 72 1-74 6-78 (90)
42 3vdz_A Ubiquitin-40S ribosomal 99.7 6.4E-17 2.2E-21 119.8 11.2 78 82-164 33-111 (111)
43 4ajy_B Transcription elongatio 99.7 5.2E-17 1.8E-21 119.7 10.3 73 1-74 1-82 (118)
44 1uel_A HHR23B, UV excision rep 99.7 8.6E-17 2.9E-21 115.8 11.2 71 85-156 1-75 (95)
45 4eew_A Large proline-rich prot 99.7 2.7E-17 9.1E-22 116.7 8.3 86 145-244 2-87 (88)
46 2ojr_A Ubiquitin; lanthide-bin 99.7 7.7E-17 2.6E-21 119.4 11.0 78 82-164 33-111 (111)
47 2kdi_A Ubiquitin, vacuolar pro 99.7 1.2E-18 4E-23 129.8 1.1 98 1-107 10-112 (114)
48 3v6c_B Ubiquitin; structural g 99.7 4.3E-17 1.5E-21 116.4 9.3 71 1-72 18-89 (91)
49 3m62_B UV excision repair prot 99.7 2.5E-17 8.4E-22 121.0 8.0 74 1-75 2-76 (106)
50 1uel_A HHR23B, UV excision rep 99.7 1.1E-16 3.7E-21 115.3 11.2 73 1-74 1-77 (95)
51 2bwf_A Ubiquitin-like protein 99.7 9.5E-17 3.3E-21 110.8 10.2 71 1-72 5-75 (77)
52 2wyq_A HHR23A, UV excision rep 99.7 7.5E-17 2.6E-21 113.5 9.8 73 1-74 6-82 (85)
53 1ndd_A NEDD8, protein (ubiquit 99.7 8.4E-17 2.9E-21 110.6 9.8 71 1-72 1-72 (76)
54 3l0w_B Monoubiquitinated proli 99.7 2.2E-16 7.6E-21 125.3 13.4 76 85-165 1-77 (169)
55 1wgd_A Homocysteine-responsive 99.7 7E-17 2.4E-21 115.8 9.5 80 82-166 5-91 (93)
56 1yx5_B Ubiquitin; proteasome, 99.7 1.2E-16 4E-21 115.8 10.6 75 85-164 1-76 (98)
57 2wyq_A HHR23A, UV excision rep 99.7 1.4E-16 4.9E-21 112.1 10.7 75 82-157 3-81 (85)
58 1yx5_B Ubiquitin; proteasome, 99.7 1.1E-16 3.9E-21 115.8 10.2 86 1-95 1-88 (98)
59 1v2y_A 3300001G02RIK protein; 99.7 3.7E-17 1.3E-21 119.1 7.4 78 83-164 6-99 (105)
60 1sif_A Ubiquitin; hydrophobic 99.7 1E-16 3.5E-21 113.8 9.6 71 1-72 10-81 (88)
61 2fnj_B Transcription elongatio 99.7 5.9E-17 2E-21 119.9 8.6 71 1-72 1-80 (118)
62 4a20_A Ubiquitin-like protein 99.7 1.2E-16 4E-21 115.3 9.7 74 82-156 17-95 (98)
63 3a9j_A Ubiquitin; protein comp 99.7 1.8E-16 6.2E-21 108.9 10.3 71 1-72 1-72 (76)
64 2bwf_A Ubiquitin-like protein 99.7 2.3E-16 7.9E-21 108.8 10.9 71 85-156 5-75 (77)
65 3n3k_B Ubiquitin; hydrolase, p 99.7 9.4E-17 3.2E-21 113.0 9.0 71 1-72 4-75 (85)
66 1wx8_A Riken cDNA 4931431F19; 99.7 4.5E-17 1.6E-21 117.5 7.5 80 82-166 15-94 (96)
67 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1.4E-16 4.7E-21 112.7 9.9 77 164-244 2-78 (87)
68 2dzi_A Ubiquitin-like protein 99.7 1.2E-16 4.2E-21 111.3 9.4 72 1-73 8-80 (81)
69 3m62_B UV excision repair prot 99.7 7.2E-17 2.5E-21 118.5 8.5 73 84-157 1-74 (106)
70 3dbh_I NEDD8; cell cycle, acti 99.7 1.3E-16 4.4E-21 113.0 9.5 79 166-249 9-87 (88)
71 4hcn_B Polyubiquitin, ubiquiti 99.7 1.2E-16 4.3E-21 115.6 9.5 71 1-72 23-94 (98)
72 2dzi_A Ubiquitin-like protein 99.7 1.3E-16 4.3E-21 111.3 9.1 74 82-156 5-79 (81)
73 2hj8_A Interferon-induced 17 k 99.7 5.4E-17 1.8E-21 115.2 7.2 73 1-74 5-78 (88)
74 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 1.9E-16 6.4E-21 114.1 10.1 72 1-73 2-74 (96)
75 2uyz_B Small ubiquitin-related 99.7 7.6E-17 2.6E-21 112.0 7.4 71 1-72 4-75 (79)
76 3mtn_B UBA80, ubcep1, ubiquiti 99.7 1.8E-16 6.1E-21 111.5 9.2 71 1-72 4-75 (85)
77 1v5o_A 1700011N24RIK protein; 99.7 1.6E-16 5.3E-21 116.0 9.1 80 82-165 5-89 (102)
78 1we6_A Splicing factor, putati 99.7 5.5E-17 1.9E-21 120.2 6.4 81 79-164 22-107 (111)
79 1wju_A NEDD8 ultimate buster-1 99.7 2.5E-16 8.7E-21 113.3 9.6 66 93-164 29-94 (100)
80 1wju_A NEDD8 ultimate buster-1 99.7 1.2E-16 4.3E-21 114.9 7.9 64 183-246 29-92 (100)
81 3m63_B Ubiquitin domain-contai 99.7 3.9E-17 1.3E-21 118.9 5.3 93 52-156 7-99 (101)
82 1yqb_A Ubiquilin 3; structural 99.7 3.6E-16 1.2E-20 113.6 10.3 74 81-156 19-93 (100)
83 3q3f_A Ribonuclease/ubiquitin 99.7 1.7E-16 5.7E-21 127.6 9.2 78 82-164 103-181 (189)
84 2kan_A Uncharacterized protein 99.7 1.8E-16 6E-21 113.9 8.3 73 1-74 16-89 (94)
85 2klc_A Ubiquilin-1; ubiquitin- 99.7 6.5E-16 2.2E-20 112.4 11.4 77 80-157 21-97 (101)
86 2l7r_A Ubiquitin-like protein 99.7 1.7E-16 6E-21 113.7 8.0 70 1-72 20-89 (93)
87 3u5c_f 40S ribosomal protein S 99.7 3.1E-18 1E-22 133.4 -1.4 114 85-203 1-121 (152)
88 2fnj_B Transcription elongatio 99.7 2.9E-16 9.9E-21 116.2 9.3 70 85-155 1-79 (118)
89 1wy8_A NP95-like ring finger p 99.7 4.1E-16 1.4E-20 110.8 9.7 73 1-74 8-83 (89)
90 1v5t_A 8430435I17RIK protein; 99.7 1.7E-16 5.9E-21 113.1 7.6 74 1-75 8-85 (90)
91 1ttn_A DC-UBP, dendritic cell- 99.7 4E-16 1.4E-20 114.6 9.7 75 81-156 20-95 (106)
92 1j8c_A Ubiquitin-like protein 99.7 6.1E-16 2.1E-20 116.8 10.9 80 82-166 30-109 (125)
93 4ajy_B Transcription elongatio 99.7 4.4E-16 1.5E-20 114.8 9.7 71 85-156 1-80 (118)
94 1wyw_B Ubiquitin-like protein 99.7 2E-16 6.8E-21 114.3 7.8 71 1-72 22-93 (97)
95 1wgg_A Ubiquitin carboxyl-term 99.7 2.1E-16 7.2E-21 113.9 7.9 72 1-74 8-80 (96)
96 2kd0_A LRR repeats and ubiquit 99.7 6E-16 2E-20 109.1 9.9 70 3-73 15-84 (85)
97 3l0w_B Monoubiquitinated proli 99.7 1.8E-15 6.2E-20 120.1 13.6 71 1-72 1-72 (169)
98 2klc_A Ubiquilin-1; ubiquitin- 99.7 6.4E-16 2.2E-20 112.4 10.1 73 1-74 26-98 (101)
99 1ttn_A DC-UBP, dendritic cell- 99.7 3.1E-16 1.1E-20 115.1 8.4 73 1-74 24-97 (106)
100 1wgh_A Ubiquitin-like 3, HCG-1 99.6 5.5E-16 1.9E-20 114.9 9.5 75 1-75 17-101 (116)
101 3b1l_X E3 ubiquitin-protein li 99.5 9.8E-18 3.3E-22 115.6 0.0 71 85-156 1-72 (76)
102 1wx7_A Ubiquilin 3; ubiquitin- 99.6 1.3E-15 4.4E-20 111.9 11.4 75 80-156 13-88 (106)
103 3vdz_A Ubiquitin-40S ribosomal 99.6 5.7E-16 2E-20 114.6 9.6 71 1-72 36-107 (111)
104 2kd0_A LRR repeats and ubiquit 99.6 1E-15 3.4E-20 107.9 10.3 74 82-156 10-83 (85)
105 3m63_B Ubiquitin domain-contai 99.6 1.3E-16 4.4E-21 116.1 5.2 72 1-73 29-100 (101)
106 1we7_A SF3A1 protein; structur 99.6 1.3E-15 4.6E-20 113.4 10.7 80 81-165 22-112 (115)
107 1wgd_A Homocysteine-responsive 99.6 5.4E-16 1.8E-20 111.2 8.2 73 1-74 8-87 (93)
108 1v5t_A 8430435I17RIK protein; 99.6 5.7E-16 2E-20 110.3 8.2 75 82-157 5-83 (90)
109 3b1l_X E3 ubiquitin-protein li 99.4 1.6E-17 5.5E-22 114.5 0.0 71 1-72 1-72 (76)
110 1wgh_A Ubiquitin-like 3, HCG-1 99.6 2.4E-15 8.3E-20 111.4 11.3 75 82-157 14-99 (116)
111 3q3f_A Ribonuclease/ubiquitin 99.6 3.8E-16 1.3E-20 125.5 7.3 71 1-72 106-177 (189)
112 1wxv_A BAG-family molecular ch 99.6 2.1E-15 7.1E-20 107.9 10.4 76 82-157 5-85 (92)
113 1se9_A Ubiquitin family; ubiqu 99.6 1.8E-15 6.2E-20 113.2 10.2 79 82-165 14-107 (126)
114 4dbg_A Ranbp-type and C3HC4-ty 99.6 1.5E-15 5.1E-20 110.2 9.4 70 1-71 25-98 (105)
115 1v2y_A 3300001G02RIK protein; 99.6 3.8E-16 1.3E-20 113.7 6.2 74 168-245 6-95 (105)
116 1yqb_A Ubiquilin 3; structural 99.6 1.2E-15 4.2E-20 110.7 8.9 72 1-74 23-95 (100)
117 1wgg_A Ubiquitin carboxyl-term 99.6 7.6E-16 2.6E-20 111.0 7.5 74 82-157 5-79 (96)
118 1wx8_A Riken cDNA 4931431F19; 99.6 4.7E-16 1.6E-20 112.1 6.2 73 1-74 18-90 (96)
119 4dbg_A Ranbp-type and C3HC4-ty 99.6 3E-15 1E-19 108.6 10.4 72 84-156 24-99 (105)
120 2ojr_A Ubiquitin; lanthide-bin 99.6 1.2E-15 4.1E-20 112.9 8.0 96 144-244 11-106 (111)
121 2gow_A HCG-1 protein, ubiquiti 99.6 1.2E-15 4.3E-20 114.5 7.9 74 1-74 18-101 (125)
122 1v86_A DNA segment, CHR 7, way 99.6 7.3E-16 2.5E-20 110.9 6.1 73 1-75 18-90 (95)
123 1j8c_A Ubiquitin-like protein 99.6 2.7E-15 9.1E-20 113.2 9.4 73 1-74 33-105 (125)
124 1wxv_A BAG-family molecular ch 99.6 2.3E-15 7.7E-20 107.7 8.6 74 1-75 8-87 (92)
125 4b6w_A Tubulin-specific chaper 99.6 2.8E-15 9.7E-20 105.6 8.7 65 181-245 12-83 (86)
126 1se9_A Ubiquitin family; ubiqu 99.6 2.4E-15 8.2E-20 112.5 8.8 73 1-73 17-103 (126)
127 3u5e_m 60S ribosomal protein L 99.6 5.8E-17 2E-21 123.1 0.0 76 85-165 1-77 (128)
128 1v5o_A 1700011N24RIK protein; 99.6 3.6E-15 1.2E-19 108.6 9.3 77 168-244 6-83 (102)
129 2gow_A HCG-1 protein, ubiquiti 99.6 3.7E-15 1.3E-19 112.0 9.5 74 82-156 15-99 (125)
130 2kdb_A Homocysteine-responsive 99.6 1.7E-15 6E-20 109.4 7.3 73 167-243 21-99 (99)
131 1wx7_A Ubiquilin 3; ubiquitin- 99.6 3.9E-15 1.3E-19 109.2 8.4 72 1-74 18-90 (106)
132 2kdb_A Homocysteine-responsive 99.6 2.3E-15 8E-20 108.8 7.0 72 82-154 21-99 (99)
133 2dzm_A FAS-associated factor 1 99.6 2.7E-15 9.1E-20 108.4 6.8 72 180-252 15-88 (100)
134 1wia_A Hypothetical ubiquitin- 99.6 1E-14 3.5E-19 104.9 9.3 71 1-75 8-80 (95)
135 1x1m_A Ubiquitin-like protein 99.6 1E-14 3.5E-19 107.1 9.3 75 82-157 10-100 (107)
136 1v86_A DNA segment, CHR 7, way 99.6 2.8E-15 9.7E-20 107.8 6.1 73 82-156 15-87 (95)
137 3u5e_m 60S ribosomal protein L 99.6 2.2E-16 7.6E-21 119.8 0.0 71 1-72 1-72 (128)
138 1we6_A Splicing factor, putati 99.6 9.2E-15 3.1E-19 108.1 8.7 74 169-243 27-101 (111)
139 2kjr_A CG11242; UBL, ubiquitin 99.6 2.2E-14 7.5E-19 102.9 10.1 74 81-154 12-93 (95)
140 2daf_A FLJ35834 protein; hypot 99.6 1E-14 3.6E-19 106.8 8.1 66 8-74 25-90 (118)
141 1x1m_A Ubiquitin-like protein 99.6 1.1E-14 3.8E-19 107.0 8.3 73 1-74 13-101 (107)
142 1wia_A Hypothetical ubiquitin- 99.6 2E-14 6.8E-19 103.3 9.3 72 82-157 5-78 (95)
143 1we7_A SF3A1 protein; structur 99.6 2E-14 6.7E-19 107.0 9.5 63 181-243 43-105 (115)
144 4b6w_A Tubulin-specific chaper 99.5 1.6E-14 5.6E-19 101.7 8.4 72 2-74 4-85 (86)
145 2kjr_A CG11242; UBL, ubiquitin 99.5 1.3E-14 4.6E-19 104.0 8.0 74 169-244 15-94 (95)
146 2dzm_A FAS-associated factor 1 99.5 5.7E-15 1.9E-19 106.7 5.9 72 84-157 8-82 (100)
147 3u5c_f 40S ribosomal protein S 99.5 4.6E-16 1.6E-20 121.0 0.0 70 1-71 1-71 (152)
148 2kj6_A Tubulin folding cofacto 99.5 1.4E-14 4.8E-19 104.2 7.3 66 180-245 23-95 (97)
149 2kj6_A Tubulin folding cofacto 99.5 4.7E-14 1.6E-18 101.5 9.1 73 83-155 13-94 (97)
150 2dzj_A Synaptic glycoprotein S 99.5 1.7E-14 5.9E-19 102.1 5.5 68 1-69 11-85 (88)
151 2dzj_A Synaptic glycoprotein S 99.5 5E-14 1.7E-18 99.7 7.2 69 170-242 11-85 (88)
152 2daf_A FLJ35834 protein; hypot 99.5 1.4E-13 4.9E-18 100.8 9.8 74 83-157 14-89 (118)
153 2xzm_9 RPS31E; ribosome, trans 99.5 1.1E-15 3.6E-20 122.2 -1.7 73 85-167 1-74 (189)
154 3ai5_A Yeast enhanced green fl 99.5 1.5E-13 5.1E-18 118.0 10.3 75 81-156 230-305 (307)
155 1v6e_A Cytoskeleton-associated 99.4 2.4E-13 8.4E-18 97.6 8.0 72 84-155 7-86 (95)
156 3ai5_A Yeast enhanced green fl 99.4 2.5E-13 8.5E-18 116.7 9.2 71 1-72 234-305 (307)
157 1v6e_A Cytoskeleton-associated 99.4 3.1E-13 1.1E-17 97.0 7.8 69 2-71 9-86 (95)
158 1t0y_A Tubulin folding cofacto 99.4 7.2E-13 2.5E-17 99.5 9.3 73 83-155 5-85 (122)
159 1oqy_A HHR23A, UV excision rep 99.4 3E-13 1E-17 119.3 8.2 73 1-73 8-84 (368)
160 2xzm_9 RPS31E; ribosome, trans 99.4 1.6E-14 5.3E-19 115.5 0.0 65 1-71 1-66 (189)
161 2io1_B Small ubiquitin-related 99.4 1.1E-12 3.9E-17 93.7 9.4 79 82-165 5-84 (94)
162 2io1_B Small ubiquitin-related 99.4 1E-12 3.5E-17 93.9 8.7 78 168-249 6-83 (94)
163 1wf9_A NPL4 family protein; be 99.4 5.4E-13 1.8E-17 97.9 6.6 73 168-245 6-94 (107)
164 3shq_A UBLCP1; phosphatase, hy 99.4 4.8E-13 1.6E-17 116.2 7.4 74 1-75 6-82 (320)
165 1oqy_A HHR23A, UV excision rep 99.4 5.8E-13 2E-17 117.5 8.0 73 83-156 6-83 (368)
166 1t0y_A Tubulin folding cofacto 99.4 1.5E-12 5.2E-17 97.7 8.8 71 2-73 8-87 (122)
167 1wf9_A NPL4 family protein; be 99.4 8.5E-13 2.9E-17 96.8 6.9 73 84-157 7-95 (107)
168 3shq_A UBLCP1; phosphatase, hy 99.3 1.3E-12 4.5E-17 113.5 7.1 74 83-157 4-80 (320)
169 2io0_B Small ubiquitin-related 99.3 9.3E-12 3.2E-16 88.4 9.3 76 169-248 5-80 (91)
170 2io0_B Small ubiquitin-related 99.3 2.1E-11 7.2E-16 86.5 10.0 78 83-165 4-82 (91)
171 2kzr_A Ubiquitin thioesterase 99.3 5.1E-12 1.8E-16 88.9 6.7 69 1-71 1-76 (86)
172 3a4r_A Nfatc2-interacting prot 99.3 2.4E-11 8.3E-16 84.0 8.7 73 167-243 5-78 (79)
173 2kzr_A Ubiquitin thioesterase 99.3 8.9E-12 3.1E-16 87.7 6.6 71 85-156 1-77 (86)
174 2d07_B Ubiquitin-like protein 99.2 6.8E-11 2.3E-15 84.3 9.8 78 82-164 15-93 (93)
175 1wjn_A Tubulin-folding protein 99.2 4.6E-11 1.6E-15 86.0 8.7 73 84-156 9-92 (97)
176 1wm3_A Ubiquitin-like protein 99.2 4E-11 1.4E-15 81.4 7.7 64 180-243 8-71 (72)
177 1wm3_A Ubiquitin-like protein 99.2 1E-10 3.4E-15 79.4 8.9 69 85-154 2-71 (72)
178 1wz0_A Ubiquitin-like protein 99.2 7.6E-11 2.6E-15 85.6 8.1 79 82-165 22-101 (104)
179 2eke_C Ubiquitin-like protein 99.2 3.3E-10 1.1E-14 82.3 10.5 74 81-155 28-101 (106)
180 2d07_B Ubiquitin-like protein 99.1 1.6E-10 5.4E-15 82.4 8.4 74 168-245 16-89 (93)
181 3a4r_A Nfatc2-interacting prot 99.1 3.5E-10 1.2E-14 78.1 9.7 72 82-154 5-78 (79)
182 1wz0_A Ubiquitin-like protein 99.1 1.3E-10 4.5E-15 84.3 7.3 78 168-250 23-100 (104)
183 2k8h_A Small ubiquitin protein 99.1 1.9E-10 6.4E-15 84.3 7.2 79 81-164 23-102 (110)
184 1wjn_A Tubulin-folding protein 99.1 9.3E-10 3.2E-14 79.0 10.4 66 181-246 20-93 (97)
185 2k8h_A Small ubiquitin protein 99.1 1.5E-10 5.1E-15 84.8 6.1 75 168-246 25-99 (110)
186 2eke_C Ubiquitin-like protein 99.1 3.7E-10 1.2E-14 82.1 7.9 73 168-245 30-102 (106)
187 3kyd_D Small ubiquitin-related 98.7 4.8E-08 1.7E-12 71.7 8.2 72 169-244 40-111 (115)
188 3pge_A SUMO-modified prolifera 98.7 1.1E-07 3.8E-12 76.6 10.7 79 81-164 26-104 (200)
189 3pge_A SUMO-modified prolifera 98.7 4.4E-08 1.5E-12 78.9 8.2 77 169-250 29-105 (200)
190 3tix_A Ubiquitin-like protein 98.7 4.1E-08 1.4E-12 77.7 7.5 77 169-251 57-133 (207)
191 3kyd_D Small ubiquitin-related 98.7 1.7E-07 5.7E-12 68.8 9.9 72 83-155 39-111 (115)
192 4efo_A Serine/threonine-protei 98.7 1.6E-07 5.4E-12 66.3 9.3 63 8-70 22-86 (94)
193 3tix_A Ubiquitin-like protein 98.6 1.1E-07 3.7E-12 75.3 7.9 80 82-166 55-134 (207)
194 2pjh_A Protein NPL4, nuclear p 98.4 1.9E-07 6.5E-12 64.4 4.3 68 1-69 5-77 (80)
195 2pjh_A Protein NPL4, nuclear p 98.3 2.8E-07 9.7E-12 63.5 3.4 71 84-154 4-78 (80)
196 4efo_A Serine/threonine-protei 98.3 1.5E-06 5.2E-11 61.2 7.2 64 91-154 21-86 (94)
197 3v7o_A Minor nucleoprotein VP3 98.3 9.3E-08 3.2E-12 76.7 0.4 79 168-252 20-98 (227)
198 3v7o_A Minor nucleoprotein VP3 98.2 1.4E-07 4.9E-12 75.6 0.3 79 82-165 19-97 (227)
199 3goe_A DNA repair protein RAD6 98.2 1.4E-05 4.9E-10 53.6 9.3 70 85-155 10-81 (82)
200 3ivf_A Talin-1; FERM domain, c 98.2 0.00014 4.9E-09 64.1 18.7 141 85-242 4-164 (371)
201 2bps_A YUKD protein; ubiquitin 98.2 7.9E-06 2.7E-10 56.0 7.6 73 170-242 3-80 (81)
202 3goe_A DNA repair protein RAD6 98.1 8.6E-06 2.9E-10 54.7 7.3 61 183-243 19-80 (82)
203 2jxx_A Nfatc2-interacting prot 98.1 1.7E-05 5.7E-10 56.4 8.7 72 168-243 24-96 (97)
204 2ylm_A Ubiquitin carboxyl-term 98.0 0.00029 9.8E-09 65.1 17.2 204 13-217 39-286 (530)
205 3ivf_A Talin-1; FERM domain, c 97.9 0.0011 3.7E-08 58.4 17.9 139 5-156 8-167 (371)
206 2kc2_A Talin-1, F1; FERM, adhe 97.9 1.5E-05 5.2E-10 59.3 5.0 67 179-245 17-122 (128)
207 2al3_A TUG long isoform; TUG U 97.8 9.6E-05 3.3E-09 51.3 8.0 77 170-250 10-86 (90)
208 2jxx_A Nfatc2-interacting prot 97.8 0.00014 4.9E-09 51.6 8.8 72 82-154 23-96 (97)
209 3uf8_A Ubiquitin-like protein 97.8 0.0001 3.6E-09 59.9 9.2 74 82-156 19-92 (209)
210 2al3_A TUG long isoform; TUG U 97.8 0.00011 3.8E-09 51.0 7.6 74 82-156 7-81 (90)
211 3uf8_A Ubiquitin-like protein 97.8 8.2E-05 2.8E-09 60.5 8.1 73 170-247 22-94 (209)
212 3ix6_A TS, tsase, thymidylate 97.6 9.5E-06 3.3E-10 70.7 0.0 74 82-156 19-92 (360)
213 2l76_A Nfatc2-interacting prot 97.6 0.00074 2.5E-08 47.3 9.4 71 84-155 21-91 (95)
214 3ix6_A TS, tsase, thymidylate 97.6 1.1E-05 3.8E-10 70.3 0.0 72 169-245 21-92 (360)
215 2l76_A Nfatc2-interacting prot 97.5 0.00045 1.5E-08 48.4 7.8 63 181-243 28-90 (95)
216 2bps_A YUKD protein; ubiquitin 97.4 0.00038 1.3E-08 47.6 6.5 68 85-153 5-80 (81)
217 2ylm_A Ubiquitin carboxyl-term 97.4 0.011 3.6E-07 54.6 18.3 214 9-228 252-502 (530)
218 2kc2_A Talin-1, F1; FERM, adhe 97.3 0.00029 9.9E-09 52.4 5.3 69 86-155 13-121 (128)
219 4da1_A Protein phosphatase 1K, 97.2 4.8E-05 1.6E-09 67.7 0.0 68 182-249 38-105 (389)
220 4da1_A Protein phosphatase 1K, 97.1 7.6E-05 2.6E-09 66.4 0.0 73 84-157 30-102 (389)
221 3qx1_A FAS-associated factor 1 96.9 0.0059 2E-07 41.9 8.5 72 83-155 6-82 (84)
222 3qx1_A FAS-associated factor 1 96.8 0.0073 2.5E-07 41.4 8.2 63 180-243 14-81 (84)
223 2r2o_A Plexin-B1; effector dom 96.7 0.0053 1.8E-07 45.8 7.3 64 183-246 40-129 (138)
224 4e71_A Plexin-B2, MM1; transme 96.6 0.011 3.9E-07 42.5 7.9 62 183-244 23-109 (111)
225 2dzk_A UBX domain-containing p 96.5 0.017 5.9E-07 41.6 8.7 74 83-156 12-90 (109)
226 2l32_A Small archaeal modifier 96.2 0.016 5.4E-07 38.8 6.3 57 184-252 11-67 (74)
227 1ryj_A Unknown; beta/alpha pro 96.1 0.066 2.3E-06 35.1 9.2 66 170-251 5-70 (70)
228 4e71_A Plexin-B2, MM1; transme 96.1 0.042 1.4E-06 39.5 8.7 63 93-155 23-109 (111)
229 2dzk_A UBX domain-containing p 95.9 0.034 1.2E-06 40.0 7.7 65 180-244 20-89 (109)
230 1wj4_A KIAA0794 protein; UBX d 95.9 0.028 9.6E-07 41.5 7.3 73 82-155 41-118 (124)
231 4a3p_A Ubiquitin carboxyl-term 95.6 0.1 3.5E-06 42.2 10.2 62 95-156 141-208 (217)
232 1tyg_B YJBS; alpha beta barrel 95.5 0.046 1.6E-06 37.7 6.7 70 166-251 17-87 (87)
233 3h6n_A Plexin-D1; structural g 95.4 0.085 2.9E-06 38.7 7.9 63 182-244 15-103 (127)
234 3jyu_A Ubiquitin carboxyl-term 95.3 0.11 3.7E-06 42.6 9.5 62 95-156 153-220 (231)
235 4e74_A Plexin-A4; RBD, structu 95.3 0.1 3.5E-06 37.9 8.0 63 183-245 26-114 (117)
236 1s3s_G P47 protein; AAA ATPase 95.1 0.06 2E-06 39.9 6.7 70 82-151 50-123 (127)
237 2cr5_A Reproduction 8; UBX dom 95.1 0.093 3.2E-06 37.7 7.5 73 82-155 21-97 (109)
238 3h6n_A Plexin-D1; structural g 95.0 0.25 8.5E-06 36.3 9.4 63 93-155 16-103 (127)
239 1wj4_A KIAA0794 protein; UBX d 94.9 0.099 3.4E-06 38.5 7.4 64 180-244 50-118 (124)
240 2kl0_A Putative thiamin biosyn 94.8 0.052 1.8E-06 36.1 5.1 61 181-251 5-65 (73)
241 2juo_A GA-binding protein alph 94.6 0.14 4.8E-06 34.6 6.7 59 11-70 4-62 (89)
242 2daj_A KIAA0977 protein, COBL- 94.4 0.084 2.9E-06 35.8 5.3 59 182-243 19-80 (91)
243 3kuz_A Plexin-C1; structural g 94.4 0.23 7.8E-06 36.4 8.0 61 184-244 39-125 (126)
244 2r2o_A Plexin-B1; effector dom 94.4 0.25 8.5E-06 36.8 8.3 62 94-156 41-128 (138)
245 2daj_A KIAA0977 protein, COBL- 94.3 0.1 3.5E-06 35.4 5.5 60 2-61 12-75 (91)
246 2juo_A GA-binding protein alph 94.3 0.092 3.1E-06 35.5 5.2 56 187-242 6-61 (89)
247 1oey_A P67-PHOX, neutrophil cy 94.2 0.11 3.8E-06 35.3 5.6 45 2-47 7-51 (83)
248 2k5p_A THis protein, thiamine- 94.2 0.079 2.7E-06 35.7 4.9 62 181-251 5-69 (78)
249 2cu3_A Unknown function protei 93.9 0.17 5.8E-06 32.4 6.0 61 181-251 4-64 (64)
250 1ryj_A Unknown; beta/alpha pro 93.5 0.94 3.2E-05 29.4 10.2 62 84-155 4-65 (70)
251 1oey_A P67-PHOX, neutrophil cy 93.5 0.24 8.4E-06 33.6 6.3 46 84-130 5-50 (83)
252 3jyu_A Ubiquitin carboxyl-term 93.3 0.56 1.9E-05 38.2 9.5 61 11-72 153-220 (231)
253 4e74_A Plexin-A4; RBD, structu 93.2 0.37 1.3E-05 34.9 7.2 63 94-156 27-114 (117)
254 2cr5_A Reproduction 8; UBX dom 93.0 0.37 1.3E-05 34.4 7.1 63 180-243 30-96 (109)
255 3rpf_C Molybdopterin convertin 92.7 0.77 2.6E-05 30.1 7.9 57 187-249 15-73 (74)
256 4a3p_A Ubiquitin carboxyl-term 92.6 0.28 9.6E-06 39.6 6.7 57 186-242 142-205 (217)
257 1vjk_A Molybdopterin convertin 92.2 0.87 3E-05 31.6 8.1 74 170-249 10-97 (98)
258 1s3s_G P47 protein; AAA ATPase 92.0 0.43 1.5E-05 35.1 6.5 63 2-65 54-121 (127)
259 3kuz_A Plexin-C1; structural g 91.9 1 3.4E-05 32.9 8.1 61 94-154 39-124 (126)
260 1f0z_A THis protein; ubiquitin 91.9 0.33 1.1E-05 31.2 5.1 62 181-251 5-66 (66)
261 2l32_A Small archaeal modifier 91.2 0.59 2E-05 30.9 5.9 59 85-154 1-60 (74)
262 2kvr_A Ubiquitin carboxyl-term 90.7 0.29 9.7E-06 36.3 4.4 35 12-46 58-92 (130)
263 1vd2_A Protein kinase C, IOTA 90.7 0.89 3.1E-05 31.3 6.6 47 1-47 7-54 (89)
264 1tyg_B YJBS; alpha beta barrel 90.0 1.1 3.8E-05 30.6 6.6 63 83-155 19-82 (87)
265 1vd2_A Protein kinase C, IOTA 89.7 2.2 7.6E-05 29.2 7.9 49 83-131 5-54 (89)
266 1fm0_D Molybdopterin convertin 89.7 1.2 4E-05 29.5 6.5 59 185-250 18-81 (81)
267 1rws_A Hypothetical protein PF 89.4 0.19 6.4E-06 33.5 2.2 48 188-244 25-72 (77)
268 2kvr_A Ubiquitin carboxyl-term 89.2 0.46 1.6E-05 35.2 4.4 33 96-128 58-90 (130)
269 1vjk_A Molybdopterin convertin 89.0 4.2 0.00014 28.0 9.5 68 81-154 6-92 (98)
270 2q5w_D Molybdopterin convertin 88.9 0.83 2.8E-05 30.0 5.2 55 184-244 16-72 (77)
271 2qjl_A URM1, ubiquitin-related 88.7 2.8 9.4E-05 29.1 8.1 66 184-250 20-99 (99)
272 1ip9_A BEM1 protein; ubiquitin 88.6 1.1 3.6E-05 30.4 5.4 41 1-43 13-53 (85)
273 3po0_A Small archaeal modifier 88.3 2.6 8.7E-05 28.5 7.6 61 184-250 18-89 (89)
274 3hm6_X Plexin-B1; structural g 88.0 0.92 3.2E-05 42.0 6.4 64 183-246 273-362 (644)
275 2cu3_A Unknown function protei 87.1 3.6 0.00012 25.9 7.3 56 91-155 4-59 (64)
276 1wgk_A Riken cDNA 2900073H19 p 87.0 3.7 0.00013 29.4 8.0 63 185-250 31-108 (114)
277 2kl0_A Putative thiamin biosyn 86.8 1.4 4.7E-05 29.0 5.2 56 91-155 5-60 (73)
278 3dwg_C 9.5 kDa culture filtrat 86.7 5.1 0.00017 27.2 8.4 60 183-244 16-88 (93)
279 3ig3_A Plxna3 protein; plexin 86.2 2.1 7.3E-05 39.5 7.7 64 183-246 246-335 (627)
280 2g1e_A Hypothetical protein TA 85.9 2.9 0.0001 28.1 6.8 56 188-244 19-85 (90)
281 2k5p_A THis protein, thiamine- 84.0 1.3 4.6E-05 29.5 4.1 59 91-155 5-64 (78)
282 3rpf_C Molybdopterin convertin 83.5 4.8 0.00017 26.1 6.8 65 85-155 1-69 (74)
283 1wgk_A Riken cDNA 2900073H19 p 82.3 11 0.00039 26.8 9.1 77 83-165 10-109 (114)
284 3ig3_A Plxna3 protein; plexin 81.8 8.5 0.00029 35.6 9.7 63 94-156 247-334 (627)
285 4eut_A Serine/threonine-protei 81.6 5.7 0.00019 34.3 8.4 53 8-60 320-374 (396)
286 1f0z_A THis protein; ubiquitin 80.5 5.9 0.0002 25.0 6.2 57 91-155 5-61 (66)
287 1y8x_B Ubiquitin-activating en 79.8 6.8 0.00023 27.3 6.6 66 182-247 3-86 (98)
288 2hj1_A Hypothetical protein; s 76.9 10 0.00035 26.3 6.8 70 169-244 12-84 (97)
289 3hm6_X Plexin-B1; structural g 76.9 13 0.00043 34.6 9.2 63 94-156 274-361 (644)
290 1ip9_A BEM1 protein; ubiquitin 76.6 10 0.00035 25.6 6.4 38 83-120 11-48 (85)
291 1q1o_A Cell division control p 75.7 4.2 0.00014 28.4 4.5 35 2-36 7-49 (98)
292 3qa8_A MGC80376 protein; kinas 75.4 5 0.00017 37.9 6.4 66 180-245 318-393 (676)
293 1wgr_A Growth factor receptor- 75.3 11 0.00039 26.3 6.7 68 173-242 11-89 (100)
294 3qa8_A MGC80376 protein; kinas 73.5 3 0.0001 39.4 4.4 51 8-58 320-371 (676)
295 2k9x_A Tburm1, uncharacterized 72.3 6.5 0.00022 28.0 5.0 74 170-244 5-97 (110)
296 3po0_A Small archaeal modifier 72.3 19 0.00063 24.0 7.9 56 94-155 18-84 (89)
297 1h4r_A Merlin; FERM, neurofibr 72.2 13 0.00044 31.2 7.8 68 170-242 23-95 (314)
298 3dwg_C 9.5 kDa culture filtrat 71.9 20 0.00067 24.1 8.1 56 97-155 20-88 (93)
299 4eut_A Serine/threonine-protei 70.9 11 0.00037 32.5 7.1 53 92-144 320-373 (396)
300 3onh_A Ubiquitin-activating en 70.7 9.7 0.00033 27.8 5.6 51 193-244 19-78 (127)
301 2ns5_A Partitioning-defective 70.5 22 0.00074 24.0 7.1 57 1-57 3-69 (85)
302 1ef1_A Moesin; membrane, FERM 68.8 32 0.0011 28.3 9.5 71 85-156 2-78 (294)
303 1hmj_A RPB5, protein (subunit 68.1 4.6 0.00016 26.9 3.1 48 200-252 20-67 (78)
304 2l52_A Methanosarcina acetivor 67.7 13 0.00045 25.5 5.7 58 189-249 24-98 (99)
305 1q1o_A Cell division control p 65.9 10 0.00034 26.4 4.6 37 84-120 5-49 (98)
306 1ef1_A Moesin; membrane, FERM 64.8 20 0.00069 29.6 7.4 61 181-242 9-75 (294)
307 2l52_A Methanosarcina acetivor 63.7 32 0.0011 23.5 7.8 67 84-155 3-94 (99)
308 4gdk_A Ubiquitin-like protein 63.1 15 0.00053 25.0 5.2 43 187-229 23-67 (91)
309 2kmc_A Fermitin family homolog 63.0 35 0.0012 23.6 8.8 69 85-154 20-97 (102)
310 2kmc_A Fermitin family homolog 62.8 35 0.0012 23.6 7.0 61 184-244 33-98 (102)
311 1fm0_D Molybdopterin convertin 62.1 26 0.00088 22.6 6.2 55 94-155 17-76 (81)
312 2i1j_A Moesin; FERM, coiled-co 61.8 21 0.00072 32.9 7.5 61 181-242 12-78 (575)
313 1h4r_A Merlin; FERM, neurofibr 59.9 50 0.0017 27.4 9.0 73 82-156 20-98 (314)
314 1eik_A RNA polymerase subunit 57.9 4 0.00014 27.1 1.4 47 201-252 23-69 (77)
315 2q5w_D Molybdopterin convertin 57.7 28 0.00096 22.2 5.7 54 94-154 16-71 (77)
316 2r2q_A Gamma-aminobutyric acid 57.2 28 0.00096 24.5 5.9 44 188-231 48-92 (110)
317 2qjl_A URM1, ubiquitin-related 56.9 43 0.0015 22.7 10.4 60 94-155 20-94 (99)
318 1wgr_A Growth factor receptor- 54.1 31 0.001 24.0 5.5 40 84-123 9-49 (100)
319 1y8x_B Ubiquitin-activating en 53.2 34 0.0012 23.7 5.6 61 95-155 6-83 (98)
320 2i1j_A Moesin; FERM, coiled-co 52.9 57 0.0019 30.0 8.7 72 84-156 4-81 (575)
321 2g1e_A Hypothetical protein TA 52.1 47 0.0016 21.8 7.5 54 99-154 20-84 (90)
322 2zjd_A Microtubule-associated 51.5 41 0.0014 24.5 6.1 61 82-142 33-102 (130)
323 1v8c_A MOAD related protein; r 51.1 40 0.0014 25.7 6.3 61 187-250 17-87 (168)
324 3qij_A Protein 4.1; cytoskelet 50.2 17 0.00058 30.3 4.4 69 169-241 17-91 (296)
325 2v1y_A Phosphatidylinositol-4, 49.7 37 0.0013 24.0 5.4 25 8-32 28-52 (108)
326 1n62_A Carbon monoxide dehydro 47.4 21 0.00072 27.3 4.1 28 1-28 4-31 (166)
327 2cu1_A Mitogen-activated prote 46.6 60 0.002 22.5 5.8 40 3-45 9-50 (103)
328 1eo6_A GATE-16, golgi-associat 46.6 40 0.0014 24.0 5.3 44 188-231 49-93 (117)
329 3qij_A Protein 4.1; cytoskelet 46.4 28 0.00097 28.9 5.2 73 82-155 15-94 (296)
330 2inc_C TOUB protein; DIIRON, 4 46.1 64 0.0022 21.5 8.5 58 187-244 16-81 (83)
331 3ge3_C Toluene-4-monooxygenase 46.0 64 0.0022 21.5 8.3 69 86-155 5-82 (84)
332 1t3q_A Quinoline 2-oxidoreduct 46.0 22 0.00075 27.1 4.1 28 1-28 10-37 (168)
333 2v1y_A Phosphatidylinositol-4, 45.7 76 0.0026 22.3 6.7 56 180-235 26-95 (108)
334 3hrd_D Nicotinate dehydrogenas 45.3 23 0.00078 26.9 4.0 27 1-27 4-30 (160)
335 3onh_A Ubiquitin-activating en 44.5 86 0.0029 22.7 6.7 52 103-155 19-78 (127)
336 1ffv_A CUTS, iron-sulfur prote 42.6 28 0.00094 26.5 4.1 27 2-28 5-31 (163)
337 3r8s_T 50S ribosomal protein L 42.3 64 0.0022 22.0 5.6 38 94-131 28-66 (93)
338 3ge3_C Toluene-4-monooxygenase 41.5 77 0.0026 21.2 7.2 58 187-244 18-82 (84)
339 1pqs_A Cell division control p 40.6 27 0.00092 23.0 3.3 26 11-36 3-28 (77)
340 2lgx_A Fermitin family homolog 40.5 25 0.00084 24.8 3.2 60 184-243 36-100 (112)
341 2lgx_A Fermitin family homolog 40.3 29 0.00098 24.5 3.5 60 94-154 36-100 (112)
342 2eel_A Cell death activator CI 39.4 76 0.0026 21.6 5.5 55 20-78 28-84 (91)
343 2nvu_B Maltose binding protein 39.0 88 0.003 29.8 8.0 65 182-246 710-792 (805)
344 1f2r_I Inhibitor of caspase-ac 39.0 83 0.0029 21.8 5.7 54 20-77 37-94 (100)
345 2c7h_A RBBP6, retinoblastoma-b 38.4 89 0.003 21.0 6.9 44 84-127 6-52 (86)
346 3u52_E Phenol hydroxylase comp 38.3 1.1E+02 0.0037 21.9 9.1 75 80-154 19-107 (119)
347 2inc_C TOUB protein; DIIRON, 4 38.2 87 0.003 20.9 9.7 59 96-155 15-81 (83)
348 1wz3_A Autophagy 12B, ATG12B, 37.9 39 0.0013 23.2 3.9 32 187-220 31-62 (96)
349 1c1y_B Proto-onkogene serine/t 37.6 85 0.0029 20.6 5.3 41 3-44 4-45 (77)
350 2jrh_A Mitogen-activated prote 37.6 94 0.0032 21.0 5.7 42 3-47 5-48 (94)
351 4gmv_A RAS-associated and plec 37.5 74 0.0025 26.4 6.3 50 8-57 40-96 (281)
352 3w1s_C Ubiquitin-like protein 37.5 61 0.0021 22.0 4.8 41 187-229 26-67 (91)
353 2zjd_A Microtubule-associated 37.0 67 0.0023 23.4 5.3 44 187-230 56-101 (130)
354 2kmm_A Guanosine-3',5'-BIS(dip 37.0 70 0.0024 19.9 5.0 61 1-71 1-62 (73)
355 3chb_D Cholera toxin; toxin/re 36.2 34 0.0012 22.8 3.2 30 3-32 39-69 (104)
356 3m95_A Autophagy related prote 35.4 56 0.0019 23.6 4.6 43 188-230 57-100 (125)
357 3rui_B Autophagy-related prote 34.8 63 0.0022 23.0 4.8 43 188-230 51-94 (118)
358 3h9d_A ATG8, microtubule-assoc 34.7 55 0.0019 23.4 4.4 43 188-230 52-95 (119)
359 4gmv_A RAS-associated and plec 34.6 79 0.0027 26.2 6.0 63 181-243 39-112 (281)
360 2k0q_A Putative uncharacterize 34.6 17 0.00057 23.6 1.4 17 229-245 7-23 (74)
361 3r8s_T 50S ribosomal protein L 34.5 1E+02 0.0035 20.9 5.6 40 9-48 27-67 (93)
362 3tve_T 50S ribosomal protein L 34.4 86 0.003 21.3 5.2 38 94-131 22-60 (92)
363 1rm6_C 4-hydroxybenzoyl-COA re 34.4 51 0.0017 24.8 4.5 27 3-29 5-31 (161)
364 1dzf_A DNA-directed RNA polyme 33.9 32 0.0011 27.5 3.3 52 195-252 157-208 (215)
365 2c60_A Human mitogen-activated 33.5 1.2E+02 0.0041 21.1 6.0 42 3-47 32-75 (111)
366 4a6q_A Histone deacetylase com 32.5 1.5E+02 0.0051 21.9 7.7 64 95-158 55-140 (143)
367 2cu1_A Mitogen-activated prote 32.4 75 0.0026 22.0 4.5 41 169-212 6-46 (103)
368 2r2q_A Gamma-aminobutyric acid 32.1 54 0.0018 23.0 4.0 44 98-142 48-92 (110)
369 2hj1_A Hypothetical protein; s 31.9 1.2E+02 0.0042 20.7 7.1 65 84-154 12-83 (97)
370 1t3q_A Quinoline 2-oxidoreduct 30.9 76 0.0026 24.0 5.0 30 83-112 8-37 (168)
371 3h0g_E DNA-directed RNA polyme 30.7 32 0.0011 27.3 2.8 52 195-252 152-203 (210)
372 3rui_B Autophagy-related prote 30.3 1.3E+02 0.0044 21.4 5.8 60 82-142 28-95 (118)
373 3au4_A Myosin-X; protein-prote 29.5 87 0.003 28.4 6.0 47 82-128 214-263 (555)
374 1eo6_A GATE-16, golgi-associat 28.9 1.2E+02 0.004 21.5 5.4 60 82-142 26-93 (117)
375 3h9d_A ATG8, microtubule-assoc 28.6 90 0.0031 22.3 4.7 44 14-57 52-96 (119)
376 2l05_A Serine/threonine-protei 28.3 1.4E+02 0.0049 20.3 5.9 41 3-44 20-61 (95)
377 2nnz_A Hypothetical protein; b 28.0 32 0.0011 25.9 2.3 29 1-29 30-61 (153)
378 1wxm_A A-RAF proto-oncogene se 27.9 99 0.0034 20.8 4.4 41 3-44 10-51 (86)
379 3m95_A Autophagy related prote 27.6 1.3E+02 0.0044 21.7 5.4 60 82-142 34-101 (125)
380 3au4_A Myosin-X; protein-prote 27.5 85 0.0029 28.4 5.6 43 2-44 218-263 (555)
381 2c5l_C Phosphoinositide-specif 27.4 1.7E+02 0.0058 20.8 6.0 30 188-217 24-61 (117)
382 1n62_A Carbon monoxide dehydro 27.2 84 0.0029 23.8 4.6 28 85-112 4-31 (166)
383 1vq8_S 50S ribosomal protein L 27.0 93 0.0032 20.8 4.3 32 94-125 23-54 (85)
384 3hk0_A Growth factor receptor- 26.6 1.4E+02 0.0049 24.2 6.2 49 181-229 16-71 (256)
385 1h1j_S THO1 protein; SAP domai 26.6 48 0.0016 19.9 2.5 19 193-212 7-25 (51)
386 1ltr_D ETB-R2, heat-labIle ent 25.7 45 0.0015 22.6 2.4 30 3-32 38-68 (113)
387 1ffv_A CUTS, iron-sulfur prote 24.5 1E+02 0.0035 23.3 4.6 28 85-112 4-31 (163)
388 1v8c_A MOAD related protein; r 24.5 2.3E+02 0.0077 21.3 7.0 55 98-155 18-82 (168)
389 3tve_T 50S ribosomal protein L 24.3 1.5E+02 0.0052 20.0 5.0 39 10-48 22-61 (92)
390 3hk0_A Growth factor receptor- 24.3 1.2E+02 0.0039 24.8 5.2 50 8-57 17-73 (256)
391 1zrj_A E1B-55KDA-associated pr 24.2 58 0.002 19.4 2.5 19 193-212 12-30 (50)
392 3hrd_D Nicotinate dehydrogenas 24.0 1E+02 0.0035 23.2 4.5 27 85-111 4-30 (160)
393 1vq8_S 50S ribosomal protein L 23.9 1.1E+02 0.0037 20.5 4.1 32 9-40 22-53 (85)
394 2eel_A Cell death activator CI 23.7 1.7E+02 0.006 19.7 6.5 49 104-156 28-78 (91)
395 4gdk_A Ubiquitin-like protein 23.5 1.2E+02 0.004 20.5 4.3 44 13-56 23-68 (91)
396 2eki_A DRG 1, developmentally- 22.7 1.1E+02 0.0039 20.8 4.1 57 188-245 29-87 (93)
397 3eud_A Protein SHQ1; CS domain 22.5 65 0.0022 22.9 2.9 31 213-243 62-93 (115)
398 3j21_T 50S ribosomal protein L 21.0 1.7E+02 0.006 19.4 4.7 32 94-125 24-55 (86)
399 3pvl_A Myosin VIIA isoform 1; 21.0 1.4E+02 0.0049 27.8 5.8 47 82-128 261-309 (655)
400 3he4_B Synzip5; heterodimeric 20.9 65 0.0022 18.0 2.0 15 19-33 2-16 (46)
401 1l5p_A Ferredoxin; [2Fe-2S] cl 20.3 1E+02 0.0035 20.4 3.6 25 2-26 2-26 (93)
402 3ny5_A Serine/threonine-protei 20.1 2.2E+02 0.0074 19.5 5.3 42 3-45 16-58 (96)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=5.3e-36 Score=237.19 Aligned_cols=152 Identities=26% Similarity=0.396 Sum_probs=139.7
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEE-E-cCeecCCCCCccccccccCCcEEEEEecCCCCc
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLA-V-SGWELVDGLDMEDYPIVKEGTKIDLTINPFLQS 77 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~-~-~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~~~ 77 (252)
|+|+|+. +|++++++|++++||++||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.++++ |+|+++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~-l~l~~~~---- 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGST-VLLVVDK---- 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCE-EEEEECC----
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCE-EEEEccC----
Confidence 8899975 999999999999999999999999999999999999 9 799999999999999997777 9998752
Q ss_pred cCCcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 78 SFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 78 ~~~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
.++.|+|+|+ .+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++
T Consensus 78 ---~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~y~i~~g~~l~l~~- 152 (159)
T 3rt3_B 78 ---SDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNL- 152 (159)
T ss_dssp ---CCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEE-
T ss_pred ---CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecC-CCCCHHHcCCCCCCEEEEEE-
Confidence 2457999999 58999999999999999999999999999999999999999996 89999999999999999999
Q ss_pred eccccCCCC
Q 045158 157 TMNRLRDNP 165 (252)
Q Consensus 157 ~~~~~~~~~ 165 (252)
|++||+
T Consensus 153 ---rl~GG~ 158 (159)
T 3rt3_B 153 ---RLRGGG 158 (159)
T ss_dssp ---CCC---
T ss_pred ---ecCCCC
Confidence 787763
No 2
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=235.90 Aligned_cols=150 Identities=32% Similarity=0.553 Sum_probs=137.5
Q ss_pred CEEEEE-eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCCCCccC
Q 045158 1 MRIIIV-ANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSF 79 (252)
Q Consensus 1 M~v~v~-~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~~~~~ 79 (252)
|+|+|+ ++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~-l~l~~~------- 92 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR------- 92 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCE-EEEEEC-------
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccce-eeeeec-------
Confidence 889997 49999999999999999999999999999999999999999999999999999997777 888753
Q ss_pred CcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeec
Q 045158 80 NQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTM 158 (252)
Q Consensus 80 ~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~ 158 (252)
..+.|.++|+ .+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|||++
T Consensus 93 -~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~-D~~tL~~y~i~~g~tl~l~~--- 167 (172)
T 3u30_A 93 -LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL--- 167 (172)
T ss_dssp -CCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTSBSGGGTCCTTCEEEECC---
T ss_pred -ccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCC-CCCcHHHhCCCCCCEEEEEE---
Confidence 4567999999 68999999999999999999999999999999999999999996 89999999999999999998
Q ss_pred cccCCC
Q 045158 159 NRLRDN 164 (252)
Q Consensus 159 ~~~~~~ 164 (252)
|++||
T Consensus 168 -rlrgG 172 (172)
T 3u30_A 168 -RLRGG 172 (172)
T ss_dssp ------
T ss_pred -ecCCC
Confidence 66664
No 3
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=4.5e-35 Score=231.81 Aligned_cols=153 Identities=18% Similarity=0.249 Sum_probs=138.5
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE-E-CceecccccccccccCCCCCCEEEEEeeecccc
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF-F-SGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL 161 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~-~-~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~ 161 (252)
|+|+|+ ++|+++++++++++||++||++|++.+|+|+++|+|+ | +|+.|+ |+.+|++|+|.+|++|+|+++. .
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~-d~~tL~~y~i~~~~~l~l~~~~---~ 78 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQ-DRVPLASQGLGPGSTVLLVVDK---S 78 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCC-TTSCGGGGTCCTTCEEEEEECC---C
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCC-CCCCHHHcCCCCCCEEEEEccC---C
Confidence 899999 6899999999999999999999999999999999999 9 899995 9999999999999999999841 2
Q ss_pred CCCCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEE
Q 045158 162 RDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILY 241 (252)
Q Consensus 162 ~~~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~ 241 (252)
++ .|+++|+ ..+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++||+|+
T Consensus 79 ~~-----~m~i~vk----~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~ 149 (159)
T 3rt3_B 79 DE-----PLSILVR----NNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVF 149 (159)
T ss_dssp CC-----CEEEEEE----CTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEE
T ss_pred CC-----cEEEEEE----CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEE
Confidence 33 2888775 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCeecCCC
Q 045158 242 VFKGTVSRGG 251 (252)
Q Consensus 242 l~~~~~~~~~ 251 (252)
|+ .++.|||
T Consensus 150 l~-~rl~GG~ 158 (159)
T 3rt3_B 150 MN-LRLRGGG 158 (159)
T ss_dssp EE-ECCC---
T ss_pred EE-EecCCCC
Confidence 96 4566666
No 4
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=232.70 Aligned_cols=151 Identities=25% Similarity=0.443 Sum_probs=139.8
Q ss_pred CcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeec
Q 045158 80 NQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTM 158 (252)
Q Consensus 80 ~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~ 158 (252)
.....|+|+|+ ++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|.++++|+|++
T Consensus 16 ~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~--- 91 (172)
T 3u30_A 16 PRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL--- 91 (172)
T ss_dssp ---CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEE---
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCcccc-ccCCHhHcCCcccceeeeee---
Confidence 45678999999 78999999999999999999999999999999999999999996 89999999999999999999
Q ss_pred cccCCCCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCC
Q 045158 159 NRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGD 238 (252)
Q Consensus 159 ~~~~~~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gs 238 (252)
+++++ +.++|+ .++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+++|++|+|++|+
T Consensus 92 -~~~gg-----~~i~Vk----~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~ 161 (172)
T 3u30_A 92 -RLRGG-----MQIFVK----TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 161 (172)
T ss_dssp -CCCCC-----EEEEEE----ESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTC
T ss_pred -ccccc-----ccceee----cccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCC
Confidence 66665 777775 47899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEec
Q 045158 239 ILYVFK 244 (252)
Q Consensus 239 ti~l~~ 244 (252)
+|+|+-
T Consensus 162 tl~l~~ 167 (172)
T 3u30_A 162 TLHLVL 167 (172)
T ss_dssp EEEECC
T ss_pred EEEEEE
Confidence 999963
No 5
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=2e-33 Score=220.38 Aligned_cols=150 Identities=32% Similarity=0.557 Sum_probs=139.4
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCCCCccC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSF 79 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~~~~~ 79 (252)
|+|+|+. +|+.+++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ +++..+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~-l~l~~~------- 72 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR------- 72 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCE-EEEEEC-------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCe-eEEEee-------
Confidence 8999976 8999999999999999999999999999999999999999999999999999997777 888864
Q ss_pred CcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeec
Q 045158 80 NQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTM 158 (252)
Q Consensus 80 ~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~ 158 (252)
..+.|+|+|+ ..|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++
T Consensus 73 -~~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~i~l~~--- 147 (152)
T 3b08_A 73 -LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL--- 147 (152)
T ss_dssp -CTTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEE---
T ss_pred -cccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEE---
Confidence 3456999999 58999999999999999999999999999999999999999996 89999999999999999998
Q ss_pred cccCCC
Q 045158 159 NRLRDN 164 (252)
Q Consensus 159 ~~~~~~ 164 (252)
|++||
T Consensus 148 -r~~GG 152 (152)
T 3b08_A 148 -RLRGG 152 (152)
T ss_dssp -CCCC-
T ss_pred -ecCCC
Confidence 66664
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=5.1e-32 Score=212.32 Aligned_cols=146 Identities=25% Similarity=0.457 Sum_probs=135.8
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD 163 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~ 163 (252)
|+|+|+ ..|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|+. +.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~-d~~tL~~~~i~~~~~l~l~~----~~~~ 75 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLRG 75 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEE----CCTT
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECc-CcccHHHhccCCCCeeEEEe----eccc
Confidence 689999 57899999999999999999999999999999999999999995 89999999999999999998 4444
Q ss_pred CCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158 164 NPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 164 ~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~ 243 (252)
+ +.++|+ .+.|+++.++|++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|+
T Consensus 76 ~-----~~i~Vk----~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (152)
T 3b08_A 76 G-----MQIFVK----TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146 (152)
T ss_dssp C-----EEEEEE----ESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred c-----cceeee----ecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 3 777775 4679999999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q 045158 244 K 244 (252)
Q Consensus 244 ~ 244 (252)
.
T Consensus 147 ~ 147 (152)
T 3b08_A 147 L 147 (152)
T ss_dssp E
T ss_pred E
Confidence 4
No 7
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.80 E-value=3.1e-19 Score=126.13 Aligned_cols=76 Identities=16% Similarity=0.309 Sum_probs=69.0
Q ss_pred CCcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 79 FNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 79 ~~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.+...+|+|+|+ ..|+++.+++++++||.+||++|+++.|+|+++|+|.|+|+.|+ |+.+|++|+|++|++|+|..
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~Lk-D~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLK-DHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEE
T ss_pred CCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEcc-CcCCHHHcCCCCCCEEEEEe
Confidence 345678999999 68999999999999999999999999999999999999999996 99999999999999999864
No 8
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=122.20 Aligned_cols=72 Identities=26% Similarity=0.458 Sum_probs=69.1
Q ss_pred CcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 83 DKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 83 ~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
..|+|+|+ .+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEE
Confidence 46999999 58999999999999999999999999999999999999999996 88999999999999999998
No 9
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=3e-20 Score=138.38 Aligned_cols=107 Identities=26% Similarity=0.438 Sum_probs=93.5
Q ss_pred cCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecc
Q 045158 81 QHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMN 159 (252)
Q Consensus 81 ~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~ 159 (252)
.++.++|+|+ ++|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|++
T Consensus 6 ~~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~---- 80 (114)
T 2kdi_A 6 HHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLE-DGRTLSDYNIQRESTLHLVL---- 80 (114)
T ss_dssp CCCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCSSCEEEEEE----
T ss_pred cCCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEE----
Confidence 4678999999 68999999999999999999999999999999999999999996 88999999999999999999
Q ss_pred ccCCCCccccceeeEEeeeeccCCceEEEEecCCCcHHH
Q 045158 160 RLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNE 198 (252)
Q Consensus 160 ~~~~~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~ 198 (252)
|++|| +++++.+. ..+.|++++++|.+++||.+
T Consensus 81 ~~~GG-----~~~~~~~~-~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 81 RLRGG-----SMGGAADE-EELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCCSS-----CCCSSCSS-SHHHHHHHHSSSHHHHHGGG
T ss_pred EcCCC-----ceeecccc-ccccCceEEEEeccccccCC
Confidence 67777 34555422 24678999999999988853
No 10
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.79 E-value=4.4e-19 Score=125.38 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=65.3
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT 70 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~ 70 (252)
|+|+|+. .|++++++|+|++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgst-LhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTN-LELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCE-EEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCE-EEEE
Confidence 6889975 9999999999999999999999999999999999999999999999999999998877 8874
No 11
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.78 E-value=7.6e-19 Score=124.88 Aligned_cols=77 Identities=26% Similarity=0.472 Sum_probs=70.0
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD 163 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~ 163 (252)
|+|+|+ ++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++ |++|
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~l~l~~----rl~G 75 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVL----ALRG 75 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEEC----BCC-
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEE----ECCC
Confidence 689999 68999999999999999999999999999999999999999996 89999999999999999999 7888
Q ss_pred CCc
Q 045158 164 NPP 166 (252)
Q Consensus 164 ~~~ 166 (252)
|+.
T Consensus 76 g~~ 78 (88)
T 4fbj_B 76 GGG 78 (88)
T ss_dssp ---
T ss_pred CCC
Confidence 753
No 12
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=1.6e-18 Score=122.10 Aligned_cols=72 Identities=36% Similarity=0.586 Sum_probs=67.6
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCee-cCCCCCccccccccCCcEEEEEecC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWE-LVDGLDMEDYPIVKEGTKIDLTINP 73 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~-L~d~~~L~~~~i~~~~t~i~l~~~~ 73 (252)
|+|+|+. +|+.++++|++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|+|.++++ |+|+++|
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~-i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSD-IQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSC-EEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCE-EEEEEcC
Confidence 8999965 99999999999999999999999999999999999999999 99999999999998888 8888753
No 13
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.75 E-value=5e-18 Score=120.39 Aligned_cols=79 Identities=27% Similarity=0.492 Sum_probs=73.7
Q ss_pred cCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecc
Q 045158 81 QHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMN 159 (252)
Q Consensus 81 ~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~ 159 (252)
....|+|+|+ ..|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|+++++|+|++
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~---- 83 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVL---- 83 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTSBGGGGTCCTTCEEEECC----
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEE----
Confidence 4567999999 68999999999999999999999999999999999999999996 89999999999999999998
Q ss_pred ccCCC
Q 045158 160 RLRDN 164 (252)
Q Consensus 160 ~~~~~ 164 (252)
|++||
T Consensus 84 rl~GG 88 (88)
T 3dbh_I 84 RLRGG 88 (88)
T ss_dssp CCCCC
T ss_pred eCCCC
Confidence 67665
No 14
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=4.3e-18 Score=119.81 Aligned_cols=74 Identities=24% Similarity=0.402 Sum_probs=70.0
Q ss_pred CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECcee-cccccccccccCCCCCCEEEEEee
Q 045158 82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIE-LDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~-L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
..-|+|+|+ ++|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+. |+ |+.+|++|+|++|++|+|+++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~-D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILR-EDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCC-SSSBHHHHTCCTTSCEEEEEC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecC-CcCCHHHcCCCCCCEEEEEEc
Confidence 456999999 689999999999999999999999999999999999999999 96 889999999999999999885
No 15
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=9e-18 Score=120.69 Aligned_cols=82 Identities=59% Similarity=0.991 Sum_probs=73.9
Q ss_pred CCcCCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceeccccc-ccccccCCCCCCEEEEEeee
Q 045158 79 FNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEF-RNLSEYGIREFSEIIVFLKT 157 (252)
Q Consensus 79 ~~~~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~-~~L~~y~i~~~s~i~l~~~~ 157 (252)
..+...|+|+|+..+.++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+ |+ .+|++|+|++|++|+|++
T Consensus 10 ~~~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~~tL~~ygI~~gstl~lv~-- 86 (94)
T 2kan_A 10 HAAVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELA-DDYRNLNEYGITEFSEIVVFL-- 86 (94)
T ss_dssp CSSSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEEC-CTTSBHHHHTCCTTEEEEEEE--
T ss_pred ccCCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECC-CCcccHHHCCCCCCCEEEEEE--
Confidence 44567899999954338999999999999999999999999999999999999996 88 999999999999999999
Q ss_pred ccccCCCC
Q 045158 158 MNRLRDNP 165 (252)
Q Consensus 158 ~~~~~~~~ 165 (252)
|++||+
T Consensus 87 --r~~gg~ 92 (94)
T 2kan_A 87 --KSINRA 92 (94)
T ss_dssp --CCCSSC
T ss_pred --eCCCCC
Confidence 677764
No 16
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.75 E-value=4.6e-18 Score=118.24 Aligned_cols=71 Identities=20% Similarity=0.321 Sum_probs=66.9
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~-l~l~~r 76 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLST-VFMNLR 76 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCE-EEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCE-EEEEEe
Confidence 7899976 8999999999999999999999999999999999999999999999999999997777 888764
No 17
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2e-18 Score=122.01 Aligned_cols=73 Identities=21% Similarity=0.317 Sum_probs=66.4
Q ss_pred CEEEEEe-CCeEEEEEec--CCCcHHHHHHHH-HHHhCCCCCceEEEEcCeecCCCCCcccccc-ccCCcEEEEEecCC
Q 045158 1 MRIIIVA-NGHEFVLEVG--LQEPVLEIKRKI-EQIFNIPATSQTLAVSGWELVDGLDMEDYPI-VKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~--~~~tV~~lK~~I-~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i-~~~~t~i~l~~~~~ 74 (252)
|+|+|+. +|++++++|+ +++||.+||++| +++.|+|+++|+|+|+|+.|+|+.+|++|+| .++++ |+|.++|.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~st-l~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANST-ITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCE-EEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCE-EEEEcCCC
Confidence 8999966 8988888755 999999999999 9999999999999999999999999999999 55666 99998765
No 18
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.74 E-value=1.3e-17 Score=114.82 Aligned_cols=75 Identities=27% Similarity=0.480 Sum_probs=69.0
Q ss_pred EEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158 85 IHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD 163 (252)
Q Consensus 85 ~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~ 163 (252)
|+|+|+. +|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|. |+.+|++|+|++|++|++.+ |++|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~----~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVL----ALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEE----CCC-
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEE----eCCC
Confidence 6899995 7999999999999999999999999999999999999999996 88999999999999999998 6666
Q ss_pred C
Q 045158 164 N 164 (252)
Q Consensus 164 ~ 164 (252)
|
T Consensus 76 G 76 (76)
T 1ndd_A 76 G 76 (76)
T ss_dssp -
T ss_pred C
Confidence 4
No 19
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=9.2e-18 Score=118.20 Aligned_cols=77 Identities=31% Similarity=0.596 Sum_probs=69.9
Q ss_pred cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccC
Q 045158 84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLR 162 (252)
Q Consensus 84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~ 162 (252)
+|+|+|+ ..|+++.+++++++||++||++|++++++|+++|+|+|+|+.|+ |+.+|++|+|+++++|+|++ |++
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~i~l~~----rl~ 77 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIHNHSALYLLL----KLR 77 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECC-TTCBTTTTTCCTTCEEEEEE----CCC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECC-CCCCHHHCCCCCCCEEEEEE----ecc
Confidence 5899999 58899999999999999999999999999999999999999996 88999999999999999999 677
Q ss_pred CCC
Q 045158 163 DNP 165 (252)
Q Consensus 163 ~~~ 165 (252)
||+
T Consensus 78 GG~ 80 (85)
T 3n3k_B 78 GGG 80 (85)
T ss_dssp ---
T ss_pred CCC
Confidence 763
No 20
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=9.7e-18 Score=121.52 Aligned_cols=80 Identities=31% Similarity=0.560 Sum_probs=72.1
Q ss_pred CcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeec
Q 045158 80 NQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTM 158 (252)
Q Consensus 80 ~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~ 158 (252)
.....|+|+|+ ..|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++
T Consensus 18 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~--- 93 (98)
T 4hcn_B 18 FQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL--- 93 (98)
T ss_dssp ----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBSGGGTCCTTEEEEEEC---
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEE---
Confidence 34567999999 68999999999999999999999999999999999999999996 89999999999999999998
Q ss_pred cccCCC
Q 045158 159 NRLRDN 164 (252)
Q Consensus 159 ~~~~~~ 164 (252)
|++||
T Consensus 94 -rl~GG 98 (98)
T 4hcn_B 94 -RLRGG 98 (98)
T ss_dssp -BCSCC
T ss_pred -ecCCC
Confidence 67765
No 21
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.9e-17 Score=117.75 Aligned_cols=80 Identities=21% Similarity=0.355 Sum_probs=72.9
Q ss_pred CCcEEEEEEe-CC-cEEEE-eeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeec
Q 045158 82 HDKIHIIIKF-PS-RKFNI-DVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTM 158 (252)
Q Consensus 82 ~~~~~i~v~~-~g-~~~~l-~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~ 158 (252)
+.+|+|+|+. .| +.+.+ ++++++||.+||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|.++++|+|++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~--- 80 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLE-NGYTLFDYDVGLNDIIQLLV--- 80 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECC-SSSBHHHHTCCTTCEEEEEE---
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECC-CCCCHHHCCCCCCCEEEEEE---
Confidence 4679999994 78 68999 599999999999999999999999999999999996 88999999999999999999
Q ss_pred cccCCCCc
Q 045158 159 NRLRDNPP 166 (252)
Q Consensus 159 ~~~~~~~~ 166 (252)
|++||++
T Consensus 81 -~~~gG~~ 87 (89)
T 1wy8_A 81 -RPDSGPS 87 (89)
T ss_dssp -CCCCSSC
T ss_pred -eCCCCCC
Confidence 6777643
No 22
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.74 E-value=1.3e-17 Score=118.50 Aligned_cols=72 Identities=26% Similarity=0.404 Sum_probs=67.7
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP 73 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~ 73 (252)
|+|+|+. +|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~-l~l~~rl 73 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSV-LHLVLAL 73 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCE-EEEECBC
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCE-EEEEEEC
Confidence 8999975 9999999999999999999999999999999999999999999999999999997777 8888654
No 23
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=3.3e-18 Score=123.19 Aligned_cols=69 Identities=13% Similarity=0.152 Sum_probs=65.0
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT 70 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~ 70 (252)
|+|+|+. +|+.++++|++++||.+||++|++++|+|+++|+|+|+|++|+|+.+|++|+|.++++ |+|.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gst-lhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMN-LELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEE-EEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCE-EEEE
Confidence 7889976 7999999999999999999999999999999999999999999999999999997777 8875
No 24
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=118.26 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=68.2
Q ss_pred CcCCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 80 NQHDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 80 ~~~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
..+..|+|+|+. .|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+| +|++|||++
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp --CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEE
T ss_pred cCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCcHHHcCC-CCcEEEEEE
Confidence 345679999995 7999999999999999999999999999999999999999996 8899999999 899999986
No 25
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.73 E-value=1.8e-17 Score=119.57 Aligned_cols=77 Identities=31% Similarity=0.581 Sum_probs=70.6
Q ss_pred cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccC
Q 045158 84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLR 162 (252)
Q Consensus 84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~ 162 (252)
.|+|+|+ ..|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|. |+.+|++|+|.+|++|+|++ |++
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~----r~~ 75 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLR 75 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEE----CCC
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEE----EcC
Confidence 3899999 58999999999999999999999999999999999999999996 88999999999999999999 677
Q ss_pred CCC
Q 045158 163 DNP 165 (252)
Q Consensus 163 ~~~ 165 (252)
||+
T Consensus 76 gG~ 78 (96)
T 3k9o_B 76 GYA 78 (96)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 26
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=2.1e-17 Score=116.97 Aligned_cols=78 Identities=22% Similarity=0.374 Sum_probs=72.9
Q ss_pred CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158 82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR 160 (252)
Q Consensus 82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~ 160 (252)
...|+|+|+. .|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|.++++|+|++ |
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~-d~~tL~~~~i~~g~~i~l~~----~ 79 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQ-DWLGLGIYGIQDSDTLILSK----K 79 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECC-SSSBHHHHTCCTTEEEEEEE----C
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEcc-CCCCHHHCCCCCCCEEEEEE----e
Confidence 4579999995 7999999999999999999999999999999999999999996 88999999999999999999 6
Q ss_pred cCCC
Q 045158 161 LRDN 164 (252)
Q Consensus 161 ~~~~ 164 (252)
++||
T Consensus 80 ~~GG 83 (87)
T 1wh3_A 80 KGSG 83 (87)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7776
No 27
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.73 E-value=1.8e-17 Score=118.08 Aligned_cols=73 Identities=22% Similarity=0.315 Sum_probs=68.8
Q ss_pred CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
+..|+|+|+. +|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+ |+.+|++|+| +|++|||+++
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-d~~tL~~~~i-~g~~i~l~~~ 76 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVER 76 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEEC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECC-CCCCHHHcCC-CCcEEEEEec
Confidence 3579999994 8999999999999999999999999999999999999999996 8999999999 8999999995
No 28
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.73 E-value=9.9e-18 Score=116.53 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=70.8
Q ss_pred cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccC
Q 045158 84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLR 162 (252)
Q Consensus 84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~ 162 (252)
.|+|+|+ .+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|++++ |++
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~-d~~tl~~~~i~~~~~i~l~~----~~~ 77 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQ----EQT 77 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTEEEEEEE----CCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeC-CCCCHHHcCCCCCCEEEEEE----ecc
Confidence 4899999 68999999999999999999999999999999999999999996 88999999999999999998 666
Q ss_pred CC
Q 045158 163 DN 164 (252)
Q Consensus 163 ~~ 164 (252)
||
T Consensus 78 GG 79 (79)
T 2uyz_B 78 GG 79 (79)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 29
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=2e-17 Score=114.63 Aligned_cols=73 Identities=21% Similarity=0.381 Sum_probs=67.8
Q ss_pred CcEEEEEE-eCCcEE-EEe-eCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 83 DKIHIIIK-FPSRKF-NID-VDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 83 ~~~~i~v~-~~g~~~-~l~-v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
+.|+|+|+ .+|+.+ .++ +++++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|+++
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~-d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQME-DGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCTTCEEEEEEC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEe
Confidence 46999999 478885 999 99999999999999999999999999999999996 889999999999999999984
No 30
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.3e-17 Score=118.45 Aligned_cols=77 Identities=32% Similarity=0.620 Sum_probs=67.9
Q ss_pred CcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecccc
Q 045158 83 DKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL 161 (252)
Q Consensus 83 ~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~ 161 (252)
..|+|+|+ ++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|++ |+
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~----r~ 82 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RL 82 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBSGGGTCCTTCEEEEEC------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCcHHHcCCCCCCEEEEEE----eC
Confidence 36999999 68999999999999999999999999999999999999999996 88999999999999999998 66
Q ss_pred CCC
Q 045158 162 RDN 164 (252)
Q Consensus 162 ~~~ 164 (252)
+||
T Consensus 83 ~GG 85 (88)
T 1sif_A 83 RGG 85 (88)
T ss_dssp ---
T ss_pred CCC
Confidence 676
No 31
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=120.01 Aligned_cols=78 Identities=14% Similarity=0.352 Sum_probs=70.5
Q ss_pred cCCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158 81 QHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR 160 (252)
Q Consensus 81 ~~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~ 160 (252)
....|+|+|+. |+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|+++++|+|++ |
T Consensus 16 ~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~y~I~~gstI~lv~----r 89 (93)
T 2l7r_A 16 PRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLE-DEATLGQCGVEALTTLEVAG----R 89 (93)
T ss_dssp ----CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECC-TTSBHHHHTCCSSCEEEEEC----C
T ss_pred CCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEE----e
Confidence 35579999998 899999999999999999999999999999999999999996 88999999999999999998 6
Q ss_pred cCCC
Q 045158 161 LRDN 164 (252)
Q Consensus 161 ~~~~ 164 (252)
++||
T Consensus 90 l~GG 93 (93)
T 2l7r_A 90 MLGG 93 (93)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7765
No 32
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=8.6e-18 Score=121.02 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=68.7
Q ss_pred CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
..+|+|+|+ ..|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|+|+++++|+|..
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~-D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFK-DHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-SSCBHHHHTCCTTEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEe
Confidence 456999999 57999999999999999999999999999999999999999996 89999999999999999874
No 33
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.73 E-value=2.4e-17 Score=117.80 Aligned_cols=76 Identities=26% Similarity=0.523 Sum_probs=71.3
Q ss_pred CcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 80 NQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 80 ~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
.....|+|+|+ ..|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 13 VPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp CCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBTGGGTCCTTCEEEEECC
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECC-CcCcHHHCCCCCCCEEEEEEe
Confidence 34668999999 68999999999999999999999999999999999999999996 889999999999999999983
No 34
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.73 E-value=2.9e-17 Score=112.96 Aligned_cols=75 Identities=32% Similarity=0.586 Sum_probs=69.9
Q ss_pred EEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158 85 IHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD 163 (252)
Q Consensus 85 ~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~ 163 (252)
|+|+|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|. |+.+|++|+|.+|++|++.+ |++|
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~----~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQRESTLHLVL----RLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEE----CCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEE----eCCC
Confidence 6899995 7899999999999999999999999999999999999999996 88999999999999999998 6666
Q ss_pred C
Q 045158 164 N 164 (252)
Q Consensus 164 ~ 164 (252)
|
T Consensus 76 G 76 (76)
T 3a9j_A 76 G 76 (76)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=2.6e-17 Score=115.82 Aligned_cols=76 Identities=32% Similarity=0.658 Sum_probs=71.6
Q ss_pred cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccC
Q 045158 84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLR 162 (252)
Q Consensus 84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~ 162 (252)
+|+|+|+ ..|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++ |++
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~----r~~ 77 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKWSTLFLLL----RLR 77 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEEC----CCC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEE----ECc
Confidence 5999999 57899999999999999999999999999999999999999996 88999999999999999999 676
Q ss_pred CC
Q 045158 163 DN 164 (252)
Q Consensus 163 ~~ 164 (252)
||
T Consensus 78 GG 79 (85)
T 3mtn_B 78 GG 79 (85)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 36
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.8e-18 Score=119.61 Aligned_cols=74 Identities=26% Similarity=0.401 Sum_probs=67.9
Q ss_pred cEEEEEE-eCCcEEEEeeC--CCccHHHHHHHH-HHHhCCCCccEEEEECceecccccccccccCC-CCCCEEEEEeeec
Q 045158 84 KIHIIIK-FPSRKFNIDVD--RTDTVRSLKEKI-HIIDGTPIKRMLLFFSGIELDDEFRNLSEYGI-REFSEIIVFLKTM 158 (252)
Q Consensus 84 ~~~i~v~-~~g~~~~l~v~--~~~TV~~lK~~I-~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i-~~~s~i~l~~~~~ 158 (252)
+|+|+|| +.|++++++++ +++||.+||++| ++..|+|+++|+|+|+|+.|+ |+.+|++|+| ++|++|+|+.+|.
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECC-TTCBHHHHCCCGGGCEEEEEECCC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECc-CcCCHHHcCCCCCCCEEEEEcCCC
Confidence 4899999 58888888755 999999999999 999999999999999999996 8999999999 7999999999764
No 37
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.72 E-value=1.6e-17 Score=120.06 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=73.2
Q ss_pred cCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecc
Q 045158 81 QHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMN 159 (252)
Q Consensus 81 ~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~ 159 (252)
....|+|+|+ .+|+.+.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~-d~~tl~dy~i~~g~~I~l~~---- 92 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQ---- 92 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTCEEEEEE----
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcC-CCCCHHHCCCCCCCEEEEEE----
Confidence 3557999999 68999999999999999999999999999999999999999996 88999999999999999998
Q ss_pred ccCCC
Q 045158 160 RLRDN 164 (252)
Q Consensus 160 ~~~~~ 164 (252)
|++||
T Consensus 93 ~~~GG 97 (97)
T 1wyw_B 93 EQTGG 97 (97)
T ss_dssp SSSCC
T ss_pred ecCCC
Confidence 67665
No 38
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.3e-17 Score=114.38 Aligned_cols=72 Identities=26% Similarity=0.443 Sum_probs=66.5
Q ss_pred CEEEEEe-CCeEE-EEE-ecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158 1 MRIIIVA-NGHEF-VLE-VGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP 73 (252)
Q Consensus 1 M~v~v~~-~g~~~-~l~-v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~ 73 (252)
|+|+|+. +|+.+ +++ +++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|++++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~-i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDT-IQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCE-EEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCE-EEEEEeC
Confidence 8899976 78885 999 99999999999999999999999999999999999999999999997777 9988754
No 39
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.72 E-value=1.3e-17 Score=120.32 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=65.5
Q ss_pred CEEEEEe-CCeEEEE--EecCCCcHHHHHHHH-HHHhCCCCCceEEEEcCeecCCCCCcccccc-ccCCcEEEEEecCC
Q 045158 1 MRIIIVA-NGHEFVL--EVGLQEPVLEIKRKI-EQIFNIPATSQTLAVSGWELVDGLDMEDYPI-VKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~-~g~~~~l--~v~~~~tV~~lK~~I-~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i-~~~~t~i~l~~~~~ 74 (252)
|+|+|+. +|+.|++ +|++++||++||++| ++..|+|+++|||+|+|+.|+|+.+|++|+| .++++ |+|+++++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~t-i~lmvskp 97 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANST-ITVMIKPN 97 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCE-EEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCE-EEEEEeCC
Confidence 7899966 8887776 666999999999999 8889999999999999999999999999999 86777 99998754
No 40
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=118.83 Aligned_cols=77 Identities=29% Similarity=0.489 Sum_probs=69.2
Q ss_pred CcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecccc
Q 045158 83 DKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL 161 (252)
Q Consensus 83 ~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~ 161 (252)
.+|+|+|+. +|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++ +.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~~I~~g~~i~l~~----~~ 77 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNL----RL 77 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCC-TTSBHHHHHCSTTCEEEEEE----C-
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEE----Ec
Confidence 469999994 7999999999999999999999999999999999999999996 88999999999999999998 55
Q ss_pred CCC
Q 045158 162 RDN 164 (252)
Q Consensus 162 ~~~ 164 (252)
+||
T Consensus 78 ~gg 80 (88)
T 2hj8_A 78 RGG 80 (88)
T ss_dssp ---
T ss_pred CCC
Confidence 555
No 41
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.72 E-value=3e-17 Score=117.00 Aligned_cols=72 Identities=24% Similarity=0.351 Sum_probs=67.4
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+. +|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|+| ++++ |||+++.+
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~-i~l~~~~~ 78 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKV-IHLVERAP 78 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEE-EEEEECCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcE-EEEEecCC
Confidence 7899976 89999999999999999999999999999999999999999999999999999 6766 99998755
No 42
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.71 E-value=6.4e-17 Score=119.79 Aligned_cols=78 Identities=31% Similarity=0.558 Sum_probs=72.4
Q ss_pred CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158 82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR 160 (252)
Q Consensus 82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~ 160 (252)
...|+|+|+ +.|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++ |
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~----r 107 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----R 107 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCTTCEEEEEE----C
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEE----e
Confidence 457999999 68999999999999999999999999999999999999999996 88999999999999999999 6
Q ss_pred cCCC
Q 045158 161 LRDN 164 (252)
Q Consensus 161 ~~~~ 164 (252)
++||
T Consensus 108 l~GG 111 (111)
T 3vdz_A 108 LRGG 111 (111)
T ss_dssp CCC-
T ss_pred cCCC
Confidence 7664
No 43
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.71 E-value=5.2e-17 Score=119.72 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=66.7
Q ss_pred CEEEEEe--CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccccc-------CCcEEEEEe
Q 045158 1 MRIIIVA--NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVK-------EGTKIDLTI 71 (252)
Q Consensus 1 M~v~v~~--~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~-------~~t~i~l~~ 71 (252)
|.|+++. ...++++++.+++||.+||.+|+.++|+|+++|||+|+|+.|+|+.||++|||.+ +++ |||+.
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~at-l~Lvl 79 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPAT-VGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEE-EEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCE-EEEEE
Confidence 7788844 6668999999999999999999999999999999999999999999999999998 777 99988
Q ss_pred cCC
Q 045158 72 NPF 74 (252)
Q Consensus 72 ~~~ 74 (252)
+..
T Consensus 80 r~~ 82 (118)
T 4ajy_B 80 RAD 82 (118)
T ss_dssp CCS
T ss_pred ecC
Confidence 754
No 44
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=8.6e-17 Score=115.82 Aligned_cols=71 Identities=32% Similarity=0.544 Sum_probs=67.3
Q ss_pred EEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHH---hCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 85 IHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHII---DGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 85 ~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~---~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
|+|+|+. .|+.+.+++++++||++||++|++. .|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|+++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILN-DDTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECC-TTSBGGGGTCCSSSEEEEEES
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEe
Confidence 7899995 7999999999999999999999999 799999999999999996 889999999999999999985
No 45
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=116.75 Aligned_cols=86 Identities=16% Similarity=0.238 Sum_probs=66.6
Q ss_pred CCCCCEEEEEeeeccccCCCCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeec
Q 045158 145 IREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMR 224 (252)
Q Consensus 145 i~~~s~i~l~~~~~~~~~~~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~ 224 (252)
..+++++++++. .+..|+++|+ ..+|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+
T Consensus 2 ~~~~~~~~~~~~---------~~~~m~i~Vk----~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~ 68 (88)
T 4eew_A 2 MEPNDSTSTAVE---------EPDSLEVLVK----TLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ 68 (88)
T ss_dssp ----------------------CCEEEEEEE----ETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC
T ss_pred CCCCCceEEeec---------CCCeEEEEEE----cCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC
Confidence 456677777663 2234777776 467999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCCEEEEec
Q 045158 225 DNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 225 d~~tL~~y~I~~gsti~l~~ 244 (252)
|+.+|++||| +|++|+|+.
T Consensus 69 D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 69 DDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp TTSBGGGGTC-TTEEEEEEE
T ss_pred CCCcHHHcCC-CCcEEEEEE
Confidence 9999999999 899999973
No 46
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.71 E-value=7.7e-17 Score=119.39 Aligned_cols=78 Identities=31% Similarity=0.558 Sum_probs=72.1
Q ss_pred CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158 82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR 160 (252)
Q Consensus 82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~ 160 (252)
...|+|+|+ ..|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|. |+.+|++|+|.+|++|+|++ |
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~----r 107 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----R 107 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-SSCBTTTTTCCTTCEEEEEE----C
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEEE----e
Confidence 457999999 57899999999999999999999999999999999999999996 88999999999999999998 6
Q ss_pred cCCC
Q 045158 161 LRDN 164 (252)
Q Consensus 161 ~~~~ 164 (252)
++||
T Consensus 108 l~GG 111 (111)
T 2ojr_A 108 LRGG 111 (111)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 6664
No 47
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.2e-18 Score=129.78 Aligned_cols=98 Identities=22% Similarity=0.301 Sum_probs=82.7
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCCCCccC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSF 79 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~~~~~ 79 (252)
.+|+|+. +|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++..
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gst-I~l~~~~~----- 83 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQREST-LHLVLRLR----- 83 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCE-EEEEECCC-----
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCE-EEEEEEcC-----
Confidence 4788855 9999999999999999999999999999999999999999999999999999997777 88886533
Q ss_pred CcCCcEEEEEEe----CCcEEEEeeCCCccHH
Q 045158 80 NQHDKIHIIIKF----PSRKFNIDVDRTDTVR 107 (252)
Q Consensus 80 ~~~~~~~i~v~~----~g~~~~l~v~~~~TV~ 107 (252)
+.++++++. .|+++++++.+++||.
T Consensus 84 ---GG~~~~~~~~~~~~g~~~~~~v~~~~~~~ 112 (114)
T 2kdi_A 84 ---GGSMGGAADEEELIRKAIELSLKESRNSG 112 (114)
T ss_dssp ---SSCCCSSCSSSHHHHHHHHSSSHHHHHGG
T ss_pred ---CCceeeccccccccCceEEEEeccccccC
Confidence 344555552 3677888888777764
No 48
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.71 E-value=4.3e-17 Score=116.44 Aligned_cols=71 Identities=34% Similarity=0.539 Sum_probs=66.7
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|+++
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~-i~l~~r 89 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 89 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCE-EEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCE-EEEEEe
Confidence 7899975 8999999999999999999999999999999999999999999999999999997777 888754
No 49
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.5e-17 Score=121.03 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=67.7
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCCC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFL 75 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~ 75 (252)
|+|+|+. +|+.+.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|+++++.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~-i~lv~~~~~ 76 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQ-VVFMVSQKK 76 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCE-EEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCE-EEEEEcCCC
Confidence 8899976 8999999999999999999999999999999999999999999999999999997777 999987653
No 50
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=1.1e-16 Score=115.29 Aligned_cols=73 Identities=22% Similarity=0.350 Sum_probs=68.4
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHH---hCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQI---FNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~---~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+. +|+.+.++|++++||.+||.+|++. +|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|+++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~-i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNF-VVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSE-EEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCE-EEEEEeCC
Confidence 9999976 8999999999999999999999999 799999999999999999999999999997777 99988755
No 51
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.70 E-value=9.5e-17 Score=110.79 Aligned_cols=71 Identities=27% Similarity=0.379 Sum_probs=65.7
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+.+|+.+.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++ |++..+
T Consensus 5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~-i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHS-VHLVKS 75 (77)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCE-EEEEEC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCE-EEEEEc
Confidence 67778669999999999999999999999999999999999999999999999999999997777 888754
No 52
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.70 E-value=7.5e-17 Score=113.55 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=66.4
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHH---hCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQI---FNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~---~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+. +|+.+.+++++++||.+||++|++. .|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+.+++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~-i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF-VVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSE-EEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCE-EEEEEcCC
Confidence 7888976 7999999999999999999999998 899999999999999999999999999997777 99887654
No 53
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.70 E-value=8.4e-17 Score=110.62 Aligned_cols=71 Identities=27% Similarity=0.421 Sum_probs=66.8
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+.+.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~-i~l~~~ 72 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSV-LHLVLA 72 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCE-EEEEEC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCE-EEEEEe
Confidence 8999987 8999999999999999999999999999999999999999999999999999997777 888754
No 54
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.70 E-value=2.2e-16 Score=125.34 Aligned_cols=76 Identities=32% Similarity=0.594 Sum_probs=70.7
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD 163 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~ 163 (252)
|+|+|+ .+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|||++ |++|
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~gstI~Lvl----rl~G 75 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLRG 75 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-TTSBGGGGTCCTTCEEEEEE----CCCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCcccc-CcCcHHHcCCCCCCEEEEEE----Eecc
Confidence 789999 58999999999999999999999999999999999999999996 89999999999999999999 7777
Q ss_pred CC
Q 045158 164 NP 165 (252)
Q Consensus 164 ~~ 165 (252)
|.
T Consensus 76 G~ 77 (169)
T 3l0w_B 76 GG 77 (169)
T ss_dssp --
T ss_pred cc
Confidence 63
No 55
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=7e-17 Score=115.84 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=71.1
Q ss_pred CCcEEEEEEe-CCc--EEEEeeCCCccHHHHHHHHHHHh--CCCCccEEEEECceeccccccccccc--CCCCCCEEEEE
Q 045158 82 HDKIHIIIKF-PSR--KFNIDVDRTDTVRSLKEKIHIID--GTPIKRMLLFFSGIELDDEFRNLSEY--GIREFSEIIVF 154 (252)
Q Consensus 82 ~~~~~i~v~~-~g~--~~~l~v~~~~TV~~lK~~I~~~~--gip~~~q~L~~~g~~L~~d~~~L~~y--~i~~~s~i~l~ 154 (252)
...|+|+|+. +++ .+.+++++++||.+||++|++.+ |+|+++|+|+|+|+.|+ |+.+|++| +|+++++|||+
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~-D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLL-DHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECC-SSSCHHHHSCSSSCSEEEEEE
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECc-CcCCHHHHhcCCCCCCEEEEE
Confidence 3468999995 566 68888889999999999999998 99999999999999996 88999999 99999999999
Q ss_pred eeeccccCCCCc
Q 045158 155 LKTMNRLRDNPP 166 (252)
Q Consensus 155 ~~~~~~~~~~~~ 166 (252)
+ +++||++
T Consensus 84 ~----~~~gg~~ 91 (93)
T 1wgd_A 84 C----NVKSGPS 91 (93)
T ss_dssp C----CCCCCCC
T ss_pred e----CCCCCCC
Confidence 8 6667643
No 56
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.70 E-value=1.2e-16 Score=115.78 Aligned_cols=75 Identities=32% Similarity=0.589 Sum_probs=70.3
Q ss_pred EEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158 85 IHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD 163 (252)
Q Consensus 85 ~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~ 163 (252)
|+|+|+. +|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|. |+.+|++|+|.+|++|+|+. +.+|
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~----~~~g 75 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLRG 75 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEE----CCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEE----eCCC
Confidence 7899995 7899999999999999999999999999999999999999996 88999999999999999998 5666
Q ss_pred C
Q 045158 164 N 164 (252)
Q Consensus 164 ~ 164 (252)
|
T Consensus 76 G 76 (98)
T 1yx5_B 76 G 76 (98)
T ss_dssp C
T ss_pred C
Confidence 6
No 57
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.70 E-value=1.4e-16 Score=112.11 Aligned_cols=75 Identities=27% Similarity=0.425 Sum_probs=68.9
Q ss_pred CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHH---hCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158 82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHII---DGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT 157 (252)
Q Consensus 82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~---~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~ 157 (252)
+.+|+|+|+. .|+.+.+++++++||++||++|++. .|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|+.++
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECC-TTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECc-CCCCHHHcCCCCCCEEEEEEcC
Confidence 4579999995 7999999999999999999999998 899999999999999996 8899999999999999999853
No 58
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.69 E-value=1.1e-16 Score=115.84 Aligned_cols=86 Identities=28% Similarity=0.394 Sum_probs=68.6
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCCCCccC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSF 79 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~~~~~ 79 (252)
|+|+|+. +|+.+.+++++++||.+||.+|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|..+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~-i~l~~~------- 72 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR------- 72 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCE-EEEEEC-------
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCE-EEEEEe-------
Confidence 9999977 8999999999999999999999999999999999999999999999999999997777 888764
Q ss_pred CcCCcEEEEEE-eCCcE
Q 045158 80 NQHDKIHIIIK-FPSRK 95 (252)
Q Consensus 80 ~~~~~~~i~v~-~~g~~ 95 (252)
..++.+++.+ .+|+.
T Consensus 73 -~~gG~~i~~~~v~~~~ 88 (98)
T 1yx5_B 73 -LRGGRDPNSSSVDKLA 88 (98)
T ss_dssp -CCCC------------
T ss_pred -CCCCCcCccccCCCch
Confidence 2345677777 45443
No 59
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=3.7e-17 Score=119.12 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=70.5
Q ss_pred CcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCC---------------ccEEEEECceecccccccccccCCC
Q 045158 83 DKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPI---------------KRMLLFFSGIELDDEFRNLSEYGIR 146 (252)
Q Consensus 83 ~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~---------------~~q~L~~~g~~L~~d~~~L~~y~i~ 146 (252)
..|+|+|+ ++|++++++|.+++||++||++|+++.++|+ .+|+|+|+|+.|.+|+.+|++|||+
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~ 85 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR 85 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence 35999999 7999999999999999999999999999987 3579999999996577999999999
Q ss_pred CCCEEEEEeeeccccCCC
Q 045158 147 EFSEIIVFLKTMNRLRDN 164 (252)
Q Consensus 147 ~~s~i~l~~~~~~~~~~~ 164 (252)
+|++|||+. |+++.
T Consensus 86 ~g~~l~lv~----~lr~~ 99 (105)
T 1v2y_A 86 NRDEVSFIK----KLGQK 99 (105)
T ss_dssp SSEEEEEEE----CSCSC
T ss_pred CCCEEEEEe----hhccC
Confidence 999999998 56553
No 60
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1e-16 Score=113.76 Aligned_cols=71 Identities=31% Similarity=0.543 Sum_probs=66.0
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|.++
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~-i~l~~r 81 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 81 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCE-EEEEC-
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCE-EEEEEe
Confidence 8999965 9999999999999999999999999999999999999999999999999999997776 888764
No 61
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.69 E-value=5.9e-17 Score=119.89 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=64.3
Q ss_pred CEEEEEe-CC-eEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccc-------cCCcEEEEEe
Q 045158 1 MRIIIVA-NG-HEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIV-------KEGTKIDLTI 71 (252)
Q Consensus 1 M~v~v~~-~g-~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~-------~~~t~i~l~~ 71 (252)
|+|+|+. .+ .+++++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||. ++++ |+|.+
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~st-L~L~l 79 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPAT-VGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEE-EEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCE-EEEEe
Confidence 7888844 44 5699999999999999999999999999999999999999999999999999 5667 88887
Q ss_pred c
Q 045158 72 N 72 (252)
Q Consensus 72 ~ 72 (252)
+
T Consensus 80 r 80 (118)
T 2fnj_B 80 R 80 (118)
T ss_dssp B
T ss_pred c
Confidence 6
No 62
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.69 E-value=1.2e-16 Score=115.34 Aligned_cols=74 Identities=26% Similarity=0.419 Sum_probs=66.9
Q ss_pred CCcEEEEEE-eCCcEEEE--eeCCCccHHHHHHHH-HHHhCCCCccEEEEECceecccccccccccCC-CCCCEEEEEee
Q 045158 82 HDKIHIIIK-FPSRKFNI--DVDRTDTVRSLKEKI-HIIDGTPIKRMLLFFSGIELDDEFRNLSEYGI-REFSEIIVFLK 156 (252)
Q Consensus 82 ~~~~~i~v~-~~g~~~~l--~v~~~~TV~~lK~~I-~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i-~~~s~i~l~~~ 156 (252)
...|+|+|+ +.|+.+++ ++++++||++||++| ++..|+|+++|+|+|+|+.|+ |+.+|++|+| ++|++|+|+++
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEEC-TTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECc-CcCCHHHcCcCCCCCEEEEEEe
Confidence 567999999 58887666 667999999999999 888899999999999999996 8999999999 99999999985
No 63
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.69 E-value=1.8e-16 Score=108.92 Aligned_cols=71 Identities=32% Similarity=0.541 Sum_probs=66.8
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |++.++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~-i~l~~~ 72 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQREST-LHLVLR 72 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCE-EEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCE-EEEEEe
Confidence 8999976 8999999999999999999999999999999999999999999999999999997777 888764
No 64
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.69 E-value=2.3e-16 Score=108.83 Aligned_cols=71 Identities=25% Similarity=0.403 Sum_probs=67.3
Q ss_pred EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
|+|+|+.+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|..+
T Consensus 5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCCHHHcCCCCCCEEEEEEc
Confidence 78889888889999999999999999999999999999999999999996 889999999999999999874
No 65
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=9.4e-17 Score=112.95 Aligned_cols=71 Identities=31% Similarity=0.513 Sum_probs=66.8
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+++.+++++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~-i~l~~r 75 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSA-LYLLLK 75 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCE-EEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCE-EEEEEe
Confidence 8999975 8999999999999999999999999999999999999999999999999999997777 888765
No 66
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=4.5e-17 Score=117.47 Aligned_cols=80 Identities=25% Similarity=0.336 Sum_probs=73.1
Q ss_pred CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecccc
Q 045158 82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL 161 (252)
Q Consensus 82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~ 161 (252)
...|+|+|+..|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++ |+
T Consensus 15 ~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~----~~ 89 (96)
T 1wx8_A 15 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILR-DQDILSQRGILDGSTVHVVV----RS 89 (96)
T ss_dssp SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECC-TTSCHHHHTCCTTEEEECCB----CC
T ss_pred CCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CcCCHHHCCCCCCCEEEEEE----eC
Confidence 46799999955999999999999999999999999999999999999999996 88999999999999999998 56
Q ss_pred CCCCc
Q 045158 162 RDNPP 166 (252)
Q Consensus 162 ~~~~~ 166 (252)
+++++
T Consensus 90 ~~g~~ 94 (96)
T 1wx8_A 90 HSGPS 94 (96)
T ss_dssp SSCSS
T ss_pred CCCCC
Confidence 66543
No 67
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.4e-16 Score=112.71 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=70.3
Q ss_pred CCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158 164 NPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 164 ~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~ 243 (252)
+.++..|+++|+. ..|+++.++|++++||++||++|++++|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+++
T Consensus 2 ~~~~~~m~i~Vk~----~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~ 77 (87)
T 1wh3_A 2 SSGSSGIQVFVKN----PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILS 77 (87)
T ss_dssp CCCSSSEEEEEEE----TTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEE
T ss_pred CCCCCCEEEEEEc----CCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEE
Confidence 3455668888863 578999999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q 045158 244 K 244 (252)
Q Consensus 244 ~ 244 (252)
.
T Consensus 78 ~ 78 (87)
T 1wh3_A 78 K 78 (87)
T ss_dssp E
T ss_pred E
Confidence 4
No 68
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=111.32 Aligned_cols=72 Identities=31% Similarity=0.529 Sum_probs=66.8
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP 73 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~ 73 (252)
|+|+|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++ |++++++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~-i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSK-LNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBC-CEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCE-EEEEEeC
Confidence 7889975 8999999999999999999999999999999999999999999999999999997877 8887653
No 69
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=7.2e-17 Score=118.54 Aligned_cols=73 Identities=19% Similarity=0.391 Sum_probs=67.9
Q ss_pred cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158 84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT 157 (252)
Q Consensus 84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~ 157 (252)
+|+|+|+ +.|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|+++.
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQ-DSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEECCC
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECC-CcCCHHHcCCCCCCEEEEEEcC
Confidence 4889999 58999999999999999999999999999999999999999996 8899999999999999999953
No 70
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.69 E-value=1.3e-16 Score=113.02 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=70.1
Q ss_pred ccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecC
Q 045158 166 PIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKG 245 (252)
Q Consensus 166 ~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~ 245 (252)
....|+|+|+ .+.|+++.++|++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+|+ -
T Consensus 9 ~~~~m~i~vk----~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~-~ 83 (88)
T 3dbh_I 9 SGGSMLIKVK----TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV-L 83 (88)
T ss_dssp CCCCEEEEEE----CTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEEC-C
T ss_pred CCCcEEEEEE----cCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEE-E
Confidence 3345777776 4689999999999999999999999999999999999999999999999999999999999996 3
Q ss_pred eecC
Q 045158 246 TVSR 249 (252)
Q Consensus 246 ~~~~ 249 (252)
++.|
T Consensus 84 rl~G 87 (88)
T 3dbh_I 84 RLRG 87 (88)
T ss_dssp CCCC
T ss_pred eCCC
Confidence 4433
No 71
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.2e-16 Score=115.64 Aligned_cols=71 Identities=34% Similarity=0.540 Sum_probs=66.5
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~-i~l~~r 94 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 94 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEE-EEEECB
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCE-EEEEEe
Confidence 8999975 9999999999999999999999999999999999999999999999999999997766 888764
No 72
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=111.25 Aligned_cols=74 Identities=23% Similarity=0.425 Sum_probs=69.5
Q ss_pred CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
+..|+|+|+ ..|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|. |+.+|++|+|.+|++|+|+++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALA-DGKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECC-TTSBGGGGTCCSSBCCEEECC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEe
Confidence 457999999 57899999999999999999999999999999999999999996 889999999999999999884
No 73
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.68 E-value=5.4e-17 Score=115.24 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=66.6
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+. +|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+.+..
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~-i~l~~~~~ 78 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLST-VFMNLRLR 78 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCE-EEEEEC--
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCE-EEEEEEcC
Confidence 7889976 7999999999999999999999999999999999999999999999999999997777 88887543
No 74
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.68 E-value=1.9e-16 Score=114.14 Aligned_cols=72 Identities=33% Similarity=0.525 Sum_probs=67.4
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP 73 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~ 73 (252)
|+|+|+. +|+.+.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~-i~l~~r~ 74 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLRL 74 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCE-EEEEECC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCE-EEEEEEc
Confidence 8999976 8999999999999999999999999999999999999999999999999999997777 8888653
No 75
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.68 E-value=7.6e-17 Score=112.02 Aligned_cols=71 Identities=14% Similarity=0.283 Sum_probs=66.2
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+++++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~-i~l~~~ 75 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDV-IEVYQE 75 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEE-EEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCE-EEEEEe
Confidence 6788875 8999999999999999999999999999999999999999999999999999997777 888764
No 76
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.8e-16 Score=111.48 Aligned_cols=71 Identities=32% Similarity=0.477 Sum_probs=66.7
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+++.+++++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|.++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~-l~l~~r 75 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWST-LFLLLR 75 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCE-EEEECC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCE-EEEEEE
Confidence 7899976 8999999999999999999999999999999999999999999999999999997777 888764
No 77
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=1.6e-16 Score=115.96 Aligned_cols=80 Identities=13% Similarity=0.260 Sum_probs=69.8
Q ss_pred CCcEEEEEEe-CC----cEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 82 HDKIHIIIKF-PS----RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 82 ~~~~~i~v~~-~g----~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
..+|+|+|+. .+ +.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+||..+|++|+|++|++|+|+.
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~- 83 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ- 83 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB-
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE-
Confidence 3469999995 33 78999999999999999999999999999999999999997343799999999999999998
Q ss_pred eccccCCCC
Q 045158 157 TMNRLRDNP 165 (252)
Q Consensus 157 ~~~~~~~~~ 165 (252)
+.++|+
T Consensus 84 ---~~~gg~ 89 (102)
T 1v5o_A 84 ---KDNVGL 89 (102)
T ss_dssp ---CCCCCC
T ss_pred ---CCCCCC
Confidence 455553
No 78
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.67 E-value=5.5e-17 Score=120.18 Aligned_cols=81 Identities=22% Similarity=0.168 Sum_probs=74.0
Q ss_pred CCcCCcEEEEEEe----CCcEEEEeeCC-CccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEE
Q 045158 79 FNQHDKIHIIIKF----PSRKFNIDVDR-TDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIV 153 (252)
Q Consensus 79 ~~~~~~~~i~v~~----~g~~~~l~v~~-~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l 153 (252)
....+.|+|+|+. .|+.+.+++++ ++||.+||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|
T Consensus 22 ~~~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~I~~g~~l~l 100 (111)
T 1we6_A 22 AQHPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLK-DNMSLAHYNVGAGEILTL 100 (111)
T ss_dssp HHCCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCC-TTSBTTTTTCSSSCEEEE
T ss_pred HhCCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCcHHHCCCCCCCEEEE
Confidence 3456789999994 57889999998 99999999999999999999999999999996 889999999999999999
Q ss_pred EeeeccccCCC
Q 045158 154 FLKTMNRLRDN 164 (252)
Q Consensus 154 ~~~~~~~~~~~ 164 (252)
++ |++||
T Consensus 101 ~~----r~~GG 107 (111)
T 1we6_A 101 SL----RERSG 107 (111)
T ss_dssp EC----SSCCS
T ss_pred EE----EcCCC
Confidence 99 77776
No 79
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=2.5e-16 Score=113.33 Aligned_cols=66 Identities=23% Similarity=0.238 Sum_probs=60.3
Q ss_pred CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCCC
Q 045158 93 SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDN 164 (252)
Q Consensus 93 g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~~ 164 (252)
++.++++|++++||.+||++|++++|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|++ + +++|.
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~-D~~TL~~y~I~~gsti~v-l----~lrg~ 94 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQ-LGKTLEEQGVAHNVKAMV-L----ELKQS 94 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECC-TTSBHHHHTCCSSEEEEE-E----CCCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECC-CCCcHHHcCCCCCCEEEE-E----EECCC
Confidence 568999999999999999999999999999999999999996 999999999999999954 4 56554
No 80
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.2e-16 Score=114.95 Aligned_cols=64 Identities=17% Similarity=0.061 Sum_probs=60.7
Q ss_pred CceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCe
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGT 246 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~ 246 (252)
+++++++|++++||++||++|++++|+|+++|+|+|+|++|+|++||++|+|++|++|.++.-+
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lr 92 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELK 92 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEEC
Confidence 7899999999999999999999999999999999999999999999999999999999877443
No 81
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.9e-17 Score=118.86 Aligned_cols=93 Identities=27% Similarity=0.381 Sum_probs=66.1
Q ss_pred CCCccccccccCCcEEEEEecCCCCccCCcCCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECce
Q 045158 52 GLDMEDYPIVKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGI 131 (252)
Q Consensus 52 ~~~L~~~~i~~~~t~i~l~~~~~~~~~~~~~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~ 131 (252)
...+++|.|. +| .+|. +...-.+.|+|+.+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+
T Consensus 7 ~~~~~~~~~~--~t-~~l~--------l~~~m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk 75 (101)
T 3m63_B 7 HHPMSDYDIP--TT-ENLY--------FQGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGK 75 (101)
T ss_dssp ---------------------------------CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTE
T ss_pred cCCccccCCC--cc-eeec--------ccCCcEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCE
Confidence 3468899986 34 4333 22222356777778889999999999999999999999999999999999999
Q ss_pred ecccccccccccCCCCCCEEEEEee
Q 045158 132 ELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 132 ~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
.|+ |+.+|++|+|++|++|+|+.+
T Consensus 76 ~L~-D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 76 ILK-DDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp ECC-TTSBTTTTTCCTTEEEEECCC
T ss_pred ECC-CcCcHHHCCCCCCCEEEEEeC
Confidence 996 899999999999999999863
No 82
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=3.6e-16 Score=113.58 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=68.4
Q ss_pred cCCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 81 QHDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 81 ~~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
.+..|+|+|+. .|+ +.+++++++||.+||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|+++
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBHHHHTCCTTCEEEEEEC
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEc
Confidence 45679999995 565 799999999999999999999999999999999999996 889999999999999999983
No 83
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.67 E-value=1.7e-16 Score=127.60 Aligned_cols=78 Identities=32% Similarity=0.564 Sum_probs=73.6
Q ss_pred CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158 82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR 160 (252)
Q Consensus 82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~ 160 (252)
+-.|+|+|+ .+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|+++++|+|++ |
T Consensus 103 ~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~Lvl----r 177 (189)
T 3q3f_A 103 HYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----R 177 (189)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTCBGGGGTCCTTCEEEECC----C
T ss_pred ccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECC-CCCCHHHCCCCCCCEEEEEE----E
Confidence 446999999 58999999999999999999999999999999999999999996 88999999999999999999 7
Q ss_pred cCCC
Q 045158 161 LRDN 164 (252)
Q Consensus 161 ~~~~ 164 (252)
++||
T Consensus 178 lrGG 181 (189)
T 3q3f_A 178 LRGG 181 (189)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8887
No 84
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=1.8e-16 Score=113.90 Aligned_cols=73 Identities=26% Similarity=0.389 Sum_probs=65.6
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCC-CCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDG-LDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+..+.+++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|.++++ |+|+++..
T Consensus 16 ~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gst-l~lv~r~~ 89 (94)
T 2kan_A 16 IHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSE-IVVFLKSI 89 (94)
T ss_dssp EEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEE-EEEEECCC
T ss_pred EEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCE-EEEEEeCC
Confidence 6888977433899999999999999999999999999999999999999999 9999999997766 88887543
No 85
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.67 E-value=6.5e-16 Score=112.40 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=70.2
Q ss_pred CcCCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158 80 NQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT 157 (252)
Q Consensus 80 ~~~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~ 157 (252)
.....|+|+|+..|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|+.++
T Consensus 21 ~~~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~g~~I~l~~~~ 97 (101)
T 2klc_A 21 GHPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILK-DQDTLSQHGIHDGLTVHLVIKT 97 (101)
T ss_dssp --CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEEC-TTCCTGGGTCCTTCEEEEEECC
T ss_pred CCCCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEcC
Confidence 3456799999955889999999999999999999999999999999999999996 8899999999999999999853
No 86
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=113.74 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=65.7
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. |+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus 20 m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gst-I~lv~r 89 (93)
T 2l7r_A 20 MQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTT-LEVAGR 89 (93)
T ss_dssp CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCE-EEEECC
T ss_pred EEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCE-EEEEEe
Confidence 7899987 899999999999999999999999999999999999999999999999999997777 888754
No 87
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.66 E-value=3.1e-18 Score=133.36 Aligned_cols=114 Identities=25% Similarity=0.440 Sum_probs=14.8
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD 163 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~ 163 (252)
|+|+|+ .+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++ |++|
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstL~Lvl----rl~G 75 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLRG 75 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEcc-ccCcHHHcCCCCCCEEEEEe----eccC
Confidence 689999 57999999999999999999999999999999999999999996 88999999999999999999 7888
Q ss_pred CCccccceeeEEeeeeccCCceEEE------EecCCCcHHHHHHHH
Q 045158 164 NPPIRRLSFKVQTSSSLLNGASIPL------EMQDSSTVNELRHLL 203 (252)
Q Consensus 164 ~~~~~~~~i~v~~~~~~~~g~~~~l------~v~~~~tV~~Lk~~i 203 (252)
|+..++-..+..+.......+...+ .|+.+.+|..+++.+
T Consensus 76 GgKkrkKk~~t~Pkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 121 (152)
T 3u5c_f 76 GGKKRKXXXXXXXXXXXXXXXXXXXXVLSYYKVDAEGKVTKLRREC 121 (152)
T ss_dssp ------CCCCCCCSCCCCCCCCCCCCCCCCSEECSSSCEECCSCBC
T ss_pred CCcCcccccccccccccccccccccceeeEEEEccCCeEEECcCcC
Confidence 8655444444433322233333333 455555665555443
No 88
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.66 E-value=2.9e-16 Score=116.21 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=63.0
Q ss_pred EEEEEE--eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCC-------CCCEEEEEe
Q 045158 85 IHIIIK--FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIR-------EFSEIIVFL 155 (252)
Q Consensus 85 ~~i~v~--~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~-------~~s~i~l~~ 155 (252)
|+++++ ....++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+ |+++|++|||+ ++++|+|.+
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~Le-D~~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCcccccccCCCCCEEEEEe
Confidence 445555 33356999999999999999999999999999999999999995 99999999999 799999999
No 89
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=4.1e-16 Score=110.75 Aligned_cols=73 Identities=22% Similarity=0.416 Sum_probs=66.9
Q ss_pred CEEEEEe-CC-eEEEE-EecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVA-NG-HEFVL-EVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~-~g-~~~~l-~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+. +| +++.+ ++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++..
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~-i~l~~~~~ 83 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDI-IQLLVRPD 83 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCE-EEEEECCC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCE-EEEEEeCC
Confidence 7899976 78 79999 599999999999999999999999999999999999999999999997777 99887644
No 90
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.66 E-value=1.7e-16 Score=113.07 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=68.8
Q ss_pred CEEEEEeCCeEEEE-EecCCCcHHHHHHHHHHHhCCCCCceEEE---EcCeecCCCCCccccccccCCcEEEEEecCCC
Q 045158 1 MRIIIVANGHEFVL-EVGLQEPVLEIKRKIEQIFNIPATSQTLA---VSGWELVDGLDMEDYPIVKEGTKIDLTINPFL 75 (252)
Q Consensus 1 M~v~v~~~g~~~~l-~v~~~~tV~~lK~~I~~~~~i~~~~q~L~---~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~ 75 (252)
|+|+|+..|+.+.+ ++++++||.+||++|++++|+|+++|+|+ |+|+.|+|+.+|++|+|.++++ |+|+.++.+
T Consensus 8 m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~-l~l~~~~~~ 85 (90)
T 1v5t_A 8 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTK-IMMMGTRES 85 (90)
T ss_dssp CCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEE-EEEECCCSS
T ss_pred EEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCE-EEEEecCcc
Confidence 78999989999999 99999999999999999999999999999 9999999999999999997766 999876553
No 91
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=4e-16 Score=114.59 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=70.0
Q ss_pred cCCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 81 QHDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 81 ~~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
....|+|+|+. .|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|. |+.+|++|+|.+|++|+|+++
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~ti~lv~~ 95 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLT-DKMKFEELKIPKDYVVQVIVS 95 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECC-TTSHHHHCCCSSSCEEEEECC
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEe
Confidence 35579999994 8999999999999999999999999999999999999999996 889999999999999999984
No 92
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=6.1e-16 Score=116.78 Aligned_cols=80 Identities=21% Similarity=0.315 Sum_probs=69.5
Q ss_pred CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecccc
Q 045158 82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL 161 (252)
Q Consensus 82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~ 161 (252)
...|+|+|+..|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|+. +.
T Consensus 30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~lv~----~~ 104 (125)
T 1j8c_A 30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILK-DQDTLIQHGIHDGLTVHLVI----KR 104 (125)
T ss_dssp CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEES-TTSCGGGTTCSSSEEEEEEE----C-
T ss_pred CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEe----cc
Confidence 45799999954889999999999999999999999999999999999999996 88999999999999999998 55
Q ss_pred CCCCc
Q 045158 162 RDNPP 166 (252)
Q Consensus 162 ~~~~~ 166 (252)
++|+.
T Consensus 105 ~gg~~ 109 (125)
T 1j8c_A 105 DPNSS 109 (125)
T ss_dssp -----
T ss_pred CCCCC
Confidence 55543
No 93
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.66 E-value=4.4e-16 Score=114.77 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=64.4
Q ss_pred EEEEEEe--CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCC-------CCEEEEEe
Q 045158 85 IHIIIKF--PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIRE-------FSEIIVFL 155 (252)
Q Consensus 85 ~~i~v~~--~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~-------~s~i~l~~ 155 (252)
|.+|++. ...++.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+ |++||++|||++ +++|+|.+
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~Le-D~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECC-CcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 4566663 4557999999999999999999999999999999999999995 999999999999 99999999
Q ss_pred e
Q 045158 156 K 156 (252)
Q Consensus 156 ~ 156 (252)
+
T Consensus 80 r 80 (118)
T 4ajy_B 80 R 80 (118)
T ss_dssp C
T ss_pred e
Confidence 3
No 94
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.66 E-value=2e-16 Score=114.34 Aligned_cols=71 Identities=14% Similarity=0.283 Sum_probs=66.6
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+.+.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~-I~l~~~ 93 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDV-IEVYQE 93 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCE-EEEEES
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCE-EEEEEe
Confidence 6888875 8999999999999999999999999999999999999999999999999999997877 888764
No 95
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=2.1e-16 Score=113.92 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=67.1
Q ss_pred CEEEEEeCCeEE-EEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVANGHEF-VLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~~g~~~-~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+..|+.+ .+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|.++++ |+|+.++.
T Consensus 8 m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~-i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMT-VLMMGSAD 80 (96)
T ss_dssp EEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCE-EECCCCCC
T ss_pred EEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCE-EEEEecch
Confidence 688898899999 6999999999999999999999999999999999999999 999999997776 99887765
No 96
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.66 E-value=6e-16 Score=109.06 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=63.7
Q ss_pred EEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158 3 IIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP 73 (252)
Q Consensus 3 v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~ 73 (252)
+.++.+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+.++
T Consensus 15 ~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~-l~l~~s~ 84 (85)
T 2kd0_A 15 LTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAK-LMLMASQ 84 (85)
T ss_dssp EEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEE-EEEECCC
T ss_pred EEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCE-EEEEEeC
Confidence 344679999999999999999999999999999999999999999999999999999997766 8887654
No 97
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.65 E-value=1.8e-15 Score=120.07 Aligned_cols=71 Identities=34% Similarity=0.540 Sum_probs=67.5
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |||.++
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gst-I~Lvlr 72 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCE-EEEEEC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCE-EEEEEE
Confidence 9999976 9999999999999999999999999999999999999999999999999999997777 999875
No 98
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.65 E-value=6.4e-16 Score=112.44 Aligned_cols=73 Identities=19% Similarity=0.188 Sum_probs=67.2
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+..|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|+.+.+
T Consensus 26 m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~-I~l~~~~~ 98 (101)
T 2klc_A 26 MKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLT-VHLVIKTQ 98 (101)
T ss_dssp EEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCE-EEEEECCS
T ss_pred EEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCE-EEEEEcCC
Confidence 68888776889999999999999999999999999999999999999999999999999997776 88887644
No 99
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=3.1e-16 Score=115.12 Aligned_cols=73 Identities=21% Similarity=0.330 Sum_probs=68.4
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+. +|+.+.++|++++||.+||.+|+.++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++.+
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~t-i~lv~~~~ 97 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYV-VQVIVSQP 97 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCE-EEEECCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCE-EEEEEeCC
Confidence 7889976 8999999999999999999999999999999999999999999999999999997777 99998755
No 100
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=5.5e-16 Score=114.89 Aligned_cols=75 Identities=11% Similarity=0.108 Sum_probs=65.2
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHH------HhCC--CCCceEEEEcCeecCCCCCccccccccCC-cEEEEE
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQ------IFNI--PATSQTLAVSGWELVDGLDMEDYPIVKEG-TKIDLT 70 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~------~~~i--~~~~q~L~~~g~~L~d~~~L~~~~i~~~~-t~i~l~ 70 (252)
|+|+|+. +|++++++|++++||.+||++|++ ++++ |+++|+|+|+|+.|+|+.+|++|+|..++ +.+||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 6888875 899999999999999999999999 6675 69999999999999999999999997443 348888
Q ss_pred ecCCC
Q 045158 71 INPFL 75 (252)
Q Consensus 71 ~~~~~ 75 (252)
++...
T Consensus 97 lr~~~ 101 (116)
T 1wgh_A 97 ARETL 101 (116)
T ss_dssp ECSSC
T ss_pred ccCCC
Confidence 87553
No 101
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.46 E-value=9.8e-18 Score=115.62 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=67.2
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
|+|+|+ .+|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|+++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELP-NHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 789999 47899999999999999999999999999999999999999996 889999999999999999983
No 102
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=1.3e-15 Score=111.87 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=68.7
Q ss_pred CcCCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 80 NQHDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 80 ~~~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
.....|+|+|+. .++ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|+++
T Consensus 13 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~ 88 (106)
T 1wx7_A 13 QDPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIK 88 (106)
T ss_dssp CCSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECC-TTSCHHHHTCCTTEEEEEEEC
T ss_pred CCCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEc
Confidence 345679999995 555 799999999999999999999999999999999999996 889999999999999999994
No 103
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.65 E-value=5.7e-16 Score=114.64 Aligned_cols=71 Identities=34% Similarity=0.543 Sum_probs=66.5
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+.+.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~-I~l~~r 107 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 107 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCE-EEEEEC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCE-EEEEEe
Confidence 7899975 8999999999999999999999999999999999999999999999999999997777 888764
No 104
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.65 E-value=1e-15 Score=107.90 Aligned_cols=74 Identities=22% Similarity=0.350 Sum_probs=68.4
Q ss_pred CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
.+.+.+.++++|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|+.+
T Consensus 10 ~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 10 HSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLV-ETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECC-TTCBTTTTTCCTTEEEEEECC
T ss_pred CCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECC-CcCCHHHCCCCCCCEEEEEEe
Confidence 45667777789999999999999999999999999999999999999999996 889999999999999999864
No 105
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.3e-16 Score=116.13 Aligned_cols=72 Identities=26% Similarity=0.373 Sum_probs=65.1
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP 73 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~ 73 (252)
|+|+|+.+|+.+.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|+.+.
T Consensus 29 i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~t-I~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHS-VHLVKSQ 100 (101)
T ss_dssp CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEE-EEECCCC
T ss_pred EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCE-EEEEeCC
Confidence 34566668999999999999999999999999999999999999999999999999999997766 8887653
No 106
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.64 E-value=1.3e-15 Score=113.39 Aligned_cols=80 Identities=24% Similarity=0.365 Sum_probs=71.0
Q ss_pred cCCcEEEEEEe-----------CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCC
Q 045158 81 QHDKIHIIIKF-----------PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFS 149 (252)
Q Consensus 81 ~~~~~~i~v~~-----------~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s 149 (252)
..+.+.|.|+. +|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|.+|+
T Consensus 22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~i~~g~ 100 (115)
T 1we7_A 22 NKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIK-DSNSLAYYNMASGA 100 (115)
T ss_dssp CCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEEC-TTSBHHHHTCCSSC
T ss_pred CCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECC-CCCCHHHCCCCCCC
Confidence 34566677774 2578999999999999999999999999999999999999996 88999999999999
Q ss_pred EEEEEeeeccccCCCC
Q 045158 150 EIIVFLKTMNRLRDNP 165 (252)
Q Consensus 150 ~i~l~~~~~~~~~~~~ 165 (252)
+|+|++ |++||.
T Consensus 101 ~i~lv~----rl~GGk 112 (115)
T 1we7_A 101 VIHLAL----KERSGP 112 (115)
T ss_dssp EEEEEE----CCCSCC
T ss_pred EEEEEE----EcCCCC
Confidence 999999 777874
No 107
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=5.4e-16 Score=111.17 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=65.3
Q ss_pred CEEEEEe-CCe--EEEEEecCCCcHHHHHHHHHHHh--CCCCCceEEEEcCeecCCCCCcccc--ccccCCcEEEEEecC
Q 045158 1 MRIIIVA-NGH--EFVLEVGLQEPVLEIKRKIEQIF--NIPATSQTLAVSGWELVDGLDMEDY--PIVKEGTKIDLTINP 73 (252)
Q Consensus 1 M~v~v~~-~g~--~~~l~v~~~~tV~~lK~~I~~~~--~i~~~~q~L~~~g~~L~d~~~L~~~--~i~~~~t~i~l~~~~ 73 (252)
|+|+|+. +++ .+++++++++||.+||++|++++ ++|+++|+|+|+|+.|+|+.+|++| +|.++++ |||+++.
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~-i~lv~~~ 86 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHV-LHLVCNV 86 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEE-EEEECCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCE-EEEEeCC
Confidence 7899976 666 67888889999999999999998 9999999999999999999999999 9997766 9998754
Q ss_pred C
Q 045158 74 F 74 (252)
Q Consensus 74 ~ 74 (252)
.
T Consensus 87 ~ 87 (93)
T 1wgd_A 87 K 87 (93)
T ss_dssp C
T ss_pred C
Confidence 3
No 108
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.64 E-value=5.7e-16 Score=110.34 Aligned_cols=75 Identities=19% Similarity=0.342 Sum_probs=70.1
Q ss_pred CCcEEEEEEeCCcEEEE-eeCCCccHHHHHHHHHHHhCCCCccEEEE---ECceecccccccccccCCCCCCEEEEEeee
Q 045158 82 HDKIHIIIKFPSRKFNI-DVDRTDTVRSLKEKIHIIDGTPIKRMLLF---FSGIELDDEFRNLSEYGIREFSEIIVFLKT 157 (252)
Q Consensus 82 ~~~~~i~v~~~g~~~~l-~v~~~~TV~~lK~~I~~~~gip~~~q~L~---~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~ 157 (252)
...|+|+|++.|+.+.+ ++++++||.+||++|++.+|+|+++|+|+ |+|+.|. |+.+|++|+|++|++|+|+..+
T Consensus 5 ~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~-D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAE-NDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECC-TTSBHHHHTCCTTEEEEEECCC
T ss_pred CceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcC-CCCCHHHcCCCCCCEEEEEecC
Confidence 34689999999999999 99999999999999999999999999999 9999995 8899999999999999998753
No 109
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.44 E-value=1.6e-17 Score=114.51 Aligned_cols=71 Identities=17% Similarity=0.333 Sum_probs=66.4
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~-i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSI-VHIVQR 72 (76)
Confidence 8999976 8999999999999999999999999999999999999999999999999999997777 887754
No 110
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=2.4e-15 Score=111.43 Aligned_cols=75 Identities=9% Similarity=0.092 Sum_probs=66.7
Q ss_pred CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHH------HhCC--CCccEEEEECceecccccccccccCCCCC--CE
Q 045158 82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHI------IDGT--PIKRMLLFFSGIELDDEFRNLSEYGIREF--SE 150 (252)
Q Consensus 82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~------~~gi--p~~~q~L~~~g~~L~~d~~~L~~y~i~~~--s~ 150 (252)
...|+|+|+ ++|++++++|++++||++||++|++ ++|+ |+++|+|+|+|+.|+ |+.+|++|+|+.+ ++
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~Le-D~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKTTV 92 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEEC-SSCBTTTTTCCSSCEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCceE
Confidence 456999999 6899999999999999999999999 5575 699999999999996 9999999999866 67
Q ss_pred EEEEeee
Q 045158 151 IIVFLKT 157 (252)
Q Consensus 151 i~l~~~~ 157 (252)
+||++++
T Consensus 93 lhLvlr~ 99 (116)
T 1wgh_A 93 MHLVARE 99 (116)
T ss_dssp EEEEECS
T ss_pred EEEEccC
Confidence 8888843
No 111
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.63 E-value=3.8e-16 Score=125.49 Aligned_cols=71 Identities=32% Similarity=0.506 Sum_probs=66.7
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gst-I~Lvlr 177 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 177 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCE-EEECCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCE-EEEEEE
Confidence 8999976 8999999999999999999999999999999999999999999999999999997777 888753
No 112
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=2.1e-15 Score=107.85 Aligned_cols=76 Identities=20% Similarity=0.334 Sum_probs=69.1
Q ss_pred CCcEEEEEEeCCcEEEEeeCCC-----ccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 82 HDKIHIIIKFPSRKFNIDVDRT-----DTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 82 ~~~~~i~v~~~g~~~~l~v~~~-----~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
..+|.|+|+..++.+.++++++ +||.+||++|++.+|+|+++|+|+|+|+.|.||+.+|++|+|++|++|+|+.+
T Consensus 5 ~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 5 SSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp CSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 3479999998888999999995 99999999999999999999999999999974367999999999999999885
Q ss_pred e
Q 045158 157 T 157 (252)
Q Consensus 157 ~ 157 (252)
+
T Consensus 85 ~ 85 (92)
T 1wxv_A 85 K 85 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 113
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.63 E-value=1.8e-15 Score=113.19 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=69.0
Q ss_pred CCcEEEEEE-eCCcEE-EEeeCCCccHHHHHHHH-----HHHhCCCC--ccEEEEECceecccccccccccCCCCC----
Q 045158 82 HDKIHIIIK-FPSRKF-NIDVDRTDTVRSLKEKI-----HIIDGTPI--KRMLLFFSGIELDDEFRNLSEYGIREF---- 148 (252)
Q Consensus 82 ~~~~~i~v~-~~g~~~-~l~v~~~~TV~~lK~~I-----~~~~gip~--~~q~L~~~g~~L~~d~~~L~~y~i~~~---- 148 (252)
...|+|+|+ ++|+.+ ++++++++||++||++| +++.|+|+ ++|+|+|+|+.|+ |+.+|++|+|+.|
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~Le-D~~TLsdy~I~~~~~~~ 92 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLE-NSKTVKDYRSPVSNLAG 92 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECC-TTSBGGGGSCCTTSCTT
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECc-CCCcHHHcCCCcCCccC
Confidence 356999999 588887 79999999999999999 45668986 8999999999996 9999999999998
Q ss_pred --CEEEEEeeeccccCCCC
Q 045158 149 --SEIIVFLKTMNRLRDNP 165 (252)
Q Consensus 149 --s~i~l~~~~~~~~~~~~ 165 (252)
+++||++ |++++.
T Consensus 93 ~v~tmhlVl----rl~g~~ 107 (126)
T 1se9_A 93 AVTTMHVII----QAPVTE 107 (126)
T ss_dssp CCEEEEEEE----CCCSSC
T ss_pred CcEEEEEEe----ccCCcc
Confidence 7899998 666653
No 114
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.63 E-value=1.5e-15 Score=110.19 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=63.0
Q ss_pred CEEEEEe-C--CeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccc-cCCcEEEEEe
Q 045158 1 MRIIIVA-N--GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIV-KEGTKIDLTI 71 (252)
Q Consensus 1 M~v~v~~-~--g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~-~~~t~i~l~~ 71 (252)
|+|+|.- . +..++++|+|++||++||++|++++|+|+++|||+|+|+.++|+.+|++|||. ++++ +||.+
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t-~hL~l 98 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDS-AYLYL 98 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCE-EEEEE
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCE-EEEEE
Confidence 6788854 3 58999999999999999999999999999999999999999999999999995 5666 88876
No 115
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=3.8e-16 Score=113.74 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=66.0
Q ss_pred ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCC---------------CceEEeecCeeec-CCccccc
Q 045158 168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPR---------------EDYIFIHKQRIMR-DNCSLRW 231 (252)
Q Consensus 168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~---------------~~~~l~~~g~~l~-d~~tL~~ 231 (252)
..|+|+|+ +++|++++++|++++||++||++|++++++|+ ++|+|+|+|+.|. |+.||.+
T Consensus 6 ~~M~I~Vk----~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d 81 (105)
T 1v2y_A 6 SGMTVRVC----KMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD 81 (105)
T ss_dssp CSEEEEEE----CSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH
T ss_pred CcEEEEEE----ecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH
Confidence 34777775 58899999999999999999999999999987 4679999999996 5699999
Q ss_pred cCCCCCCEEEEecC
Q 045158 232 HGVEYGDILYVFKG 245 (252)
Q Consensus 232 y~I~~gsti~l~~~ 245 (252)
|||++||+|+++..
T Consensus 82 ygI~~g~~l~lv~~ 95 (105)
T 1v2y_A 82 YGIRNRDEVSFIKK 95 (105)
T ss_dssp HTCCSSEEEEEEEC
T ss_pred cCCCCCCEEEEEeh
Confidence 99999999999853
No 116
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=1.2e-15 Score=110.73 Aligned_cols=72 Identities=17% Similarity=0.178 Sum_probs=65.3
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+. +|+ +.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++..
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gst-I~l~~r~~ 95 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLT-VHLVIKRQ 95 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCE-EEEEECCC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCE-EEEEEcCC
Confidence 7888976 565 799999999999999999999999999999999999999999999999997776 88887644
No 117
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=7.6e-16 Score=110.97 Aligned_cols=74 Identities=11% Similarity=0.266 Sum_probs=68.9
Q ss_pred CCcEEEEEEeCCcEE-EEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158 82 HDKIHIIIKFPSRKF-NIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT 157 (252)
Q Consensus 82 ~~~~~i~v~~~g~~~-~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~ 157 (252)
..+|+|+|++.|+.+ .+++++++||.+||++|++.+|+|+++|+|+|+|+.|. |+ +|++|+|++|++|+|+.++
T Consensus 5 ~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~-D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK-DD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECC-SS-CCCSCCCCSSCEEECCCCC
T ss_pred CcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCC-CC-CHHHCCCCCCCEEEEEecc
Confidence 356999999989999 69999999999999999999999999999999999996 77 9999999999999998754
No 118
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=4.7e-16 Score=112.10 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=66.9
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+..|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++..
T Consensus 18 m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~-i~l~~~~~ 90 (96)
T 1wx8_A 18 IRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGST-VHVVVRSH 90 (96)
T ss_dssp EEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEE-EECCBCCS
T ss_pred EEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCE-EEEEEeCC
Confidence 68888777999999999999999999999999999999999999999999999999999997766 88876543
No 119
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.62 E-value=3e-15 Score=108.58 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=65.8
Q ss_pred cEEEEEE-eC--CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCC-CCCCEEEEEee
Q 045158 84 KIHIIIK-FP--SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGI-REFSEIIVFLK 156 (252)
Q Consensus 84 ~~~i~v~-~~--g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i-~~~s~i~l~~~ 156 (252)
.|+|+|+ .. +..++++|.+++||++||++|++++|+|+++|+|+++|+.++ |+.+|.+||| ++|+++||.+-
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~-D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLAR-DQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC-TTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEcc-CcCcHHHcCCCCCCCEEEEEEE
Confidence 4788888 44 368999999999999999999999999999999999999885 9999999999 69999999883
No 120
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=112.91 Aligned_cols=96 Identities=17% Similarity=0.227 Sum_probs=77.1
Q ss_pred CCCCCCEEEEEeeeccccCCCCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeee
Q 045158 144 GIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIM 223 (252)
Q Consensus 144 ~i~~~s~i~l~~~~~~~~~~~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l 223 (252)
++.+|+++.+..++.. ...|..+..|+++|+ ...|+++.++|++++||++||++|+++.|+|++.|+|+|+|+.|
T Consensus 11 ~~~~~~~~~~~~~~~~-~~~g~~~~~m~I~Vk----~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L 85 (111)
T 2ojr_A 11 GWIEGDELYIDTNNDG-WIEGDELLAMQIFVK----TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 85 (111)
T ss_dssp SSCCGGGBCCCTTCSS-SCCGGGSSCEEEEEE----CSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEEC
T ss_pred ceecCCEEEEeecccc-cccCCCCCeEEEEEE----cCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEEC
Confidence 3455666665543321 112223445788876 45789999999999999999999999999999999999999999
Q ss_pred cCCccccccCCCCCCEEEEec
Q 045158 224 RDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 224 ~d~~tL~~y~I~~gsti~l~~ 244 (252)
+|+.+|++|||++|++|+|+-
T Consensus 86 ~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 2ojr_A 86 EDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp CSSCBTTTTTCCTTCEEEEEE
T ss_pred CCCCcHHHcCCCCCCEEEEEE
Confidence 999999999999999999973
No 121
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=114.55 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=64.3
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHH------HhCCC--CCceEEEEcCeecCCCCCccccccccCCc-EEEEE
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQ------IFNIP--ATSQTLAVSGWELVDGLDMEDYPIVKEGT-KIDLT 70 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~------~~~i~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~t-~i~l~ 70 (252)
|+|+|+. +|+++++++++++||++||++|++ ++|+| +++|+|+|+|+.|+|+.+|++|+|..++. ++||+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 5677765 899999999999999999999999 77884 89999999999999999999999985552 37888
Q ss_pred ecCC
Q 045158 71 INPF 74 (252)
Q Consensus 71 ~~~~ 74 (252)
++..
T Consensus 98 ~r~~ 101 (125)
T 2gow_A 98 ARET 101 (125)
T ss_dssp ECSC
T ss_pred ecCC
Confidence 7654
No 122
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=7.3e-16 Score=110.89 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=65.6
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCCC
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFL 75 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~ 75 (252)
|+|+|+..++.+.+++++++||.+||++|++.+|+|+++|+|+|.|+.|+ +.+|++|+|.++++ |+|+.++..
T Consensus 18 ~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~-i~lv~~~~~ 90 (95)
T 1v86_A 18 VDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAK-IMVVGSTIS 90 (95)
T ss_dssp EEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEE-EEECCSSCC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCE-EEEEecccc
Confidence 57788889999999999999999999999999999999999999999995 45999999997766 999876553
No 123
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=2.7e-15 Score=113.25 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=66.0
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+..|+.+.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+.+..
T Consensus 33 m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gst-I~lv~~~~ 105 (125)
T 1j8c_A 33 IKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLT-VHLVIKRD 105 (125)
T ss_dssp EEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEE-EEEEEC--
T ss_pred EEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCE-EEEEeccC
Confidence 68888766899999999999999999999999999999999999999999999999999997766 88887644
No 124
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=2.3e-15 Score=107.66 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=66.6
Q ss_pred CEEEEEeCCeEEEEEecCC-----CcHHHHHHHHHHHhCCCCCceEEEEcCeecCC-CCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVANGHEFVLEVGLQ-----EPVLEIKRKIEQIFNIPATSQTLAVSGWELVD-GLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~-----~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d-~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+..|+.+.++++++ +||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|+|.++++ |+|+.+++
T Consensus 8 ~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~-i~l~~~~~ 86 (92)
T 1wxv_A 8 LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCR-VMLIGKKN 86 (92)
T ss_dssp EEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEE-EEEESCCS
T ss_pred EEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCE-EEEEecCC
Confidence 6788888899999999996 99999999999999999999999999999999 55899999996666 99987665
Q ss_pred C
Q 045158 75 L 75 (252)
Q Consensus 75 ~ 75 (252)
.
T Consensus 87 ~ 87 (92)
T 1wxv_A 87 S 87 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 125
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.60 E-value=2.8e-15 Score=105.62 Aligned_cols=65 Identities=9% Similarity=0.012 Sum_probs=59.4
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEee-------cCeeecCCccccccCCCCCCEEEEecC
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIH-------KQRIMRDNCSLRWHGVEYGDILYVFKG 245 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~-------~g~~l~d~~tL~~y~I~~gsti~l~~~ 245 (252)
.+.+.....+++++||++||++|++++|+|+++|+|+| .|+.|+|+++|.+|||++|+||+|+..
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 45667788999999999999999999999999999997 478999999999999999999999854
No 126
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.60 E-value=2.4e-15 Score=112.55 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=62.7
Q ss_pred CEEEEEe-CCeEE-EEEecCCCcHHHHHHHH-----HHHhCCCC--CceEEEEcCeecCCCCCccccccccCC-----cE
Q 045158 1 MRIIIVA-NGHEF-VLEVGLQEPVLEIKRKI-----EQIFNIPA--TSQTLAVSGWELVDGLDMEDYPIVKEG-----TK 66 (252)
Q Consensus 1 M~v~v~~-~g~~~-~l~v~~~~tV~~lK~~I-----~~~~~i~~--~~q~L~~~g~~L~d~~~L~~~~i~~~~-----t~ 66 (252)
|+|+|+. +|+.+ .+++++++||.+||++| ++++|+|+ ++|||+|+|+.|+|+.+|++|+|..++ +.
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6888966 89888 79999999999999999 56678987 899999999999999999999999663 34
Q ss_pred EEEEecC
Q 045158 67 IDLTINP 73 (252)
Q Consensus 67 i~l~~~~ 73 (252)
+||+++.
T Consensus 97 mhlVlrl 103 (126)
T 1se9_A 97 MHVIIQA 103 (126)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 7777653
No 127
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.60 E-value=5.8e-17 Score=123.06 Aligned_cols=76 Identities=32% Similarity=0.590 Sum_probs=0.4
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD 163 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~ 163 (252)
|+|+|+ .+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|++ |++|
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~I~~gsti~l~~----rl~G 75 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLRG 75 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECC-CCCchhhhccCCCCEEEEEE----EcCC
Confidence 689999 58999999999999999999999999999999999999999996 89999999999999999999 6767
Q ss_pred CC
Q 045158 164 NP 165 (252)
Q Consensus 164 ~~ 165 (252)
|.
T Consensus 76 G~ 77 (128)
T 3u5e_m 76 GI 77 (128)
T ss_dssp -C
T ss_pred CC
Confidence 63
No 128
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=3.6e-15 Score=108.64 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=66.3
Q ss_pred ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCC-ccccccCCCCCCEEEEec
Q 045158 168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDN-CSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~-~tL~~y~I~~gsti~l~~ 244 (252)
..|+|+|+.......|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|.+|||++|++|+|..
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 34777776432112348999999999999999999999999999999999999999988 699999999999999974
No 129
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.60 E-value=3.7e-15 Score=111.98 Aligned_cols=74 Identities=9% Similarity=0.077 Sum_probs=66.1
Q ss_pred CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHH------HhCCC--CccEEEEECceecccccccccccCCCCCC--E
Q 045158 82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHI------IDGTP--IKRMLLFFSGIELDDEFRNLSEYGIREFS--E 150 (252)
Q Consensus 82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~------~~gip--~~~q~L~~~g~~L~~d~~~L~~y~i~~~s--~ 150 (252)
...|.|+|+ ++|++++++|++++||++||++|++ ++|+| +++|+|+|+|+.|+ |+.+|++|+|+.++ +
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~Le-D~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKTTV 93 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEE-SSCBTGGGCCCTTSEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCceE
Confidence 445899999 5899999999999999999999999 67884 89999999999996 99999999999776 7
Q ss_pred EEEEee
Q 045158 151 IIVFLK 156 (252)
Q Consensus 151 i~l~~~ 156 (252)
+||+++
T Consensus 94 lhlv~r 99 (125)
T 2gow_A 94 MHLVAR 99 (125)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 888884
No 130
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=109.44 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=62.7
Q ss_pred cccceeeEEeeeeccCCc--eEEEEecCCCcHHHHHHHHhhc-CCCCC-CceEEeecCeeecCCcccccc--CCCCCCEE
Q 045158 167 IRRLSFKVQTSSSLLNGA--SIPLEMQDSSTVNELRHLLLSS-KILPR-EDYIFIHKQRIMRDNCSLRWH--GVEYGDIL 240 (252)
Q Consensus 167 ~~~~~i~v~~~~~~~~g~--~~~l~v~~~~tV~~Lk~~i~~~-~gip~-~~~~l~~~g~~l~d~~tL~~y--~I~~gsti 240 (252)
+..|+++|+ +++|+ +++++|++++||++||++|+++ +|+|+ ++|+|+|+|+.|+|+++|++| +|++|+||
T Consensus 21 ~~~m~I~VK----~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~ti 96 (99)
T 2kdb_A 21 GHPVTLIIK----APNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMV 96 (99)
T ss_dssp --CEEEEEE----CTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEE
T ss_pred CCeEEEEEE----cCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEE
Confidence 345777776 46677 6789999999999999999985 57664 999999999999999999999 99999999
Q ss_pred EEe
Q 045158 241 YVF 243 (252)
Q Consensus 241 ~l~ 243 (252)
+|+
T Consensus 97 hLv 99 (99)
T 2kdb_A 97 HLV 99 (99)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 131
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=3.9e-15 Score=109.23 Aligned_cols=72 Identities=17% Similarity=0.178 Sum_probs=65.3
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|+|+|+. +|+ +.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++..
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~-i~l~~~~~ 90 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLT-VHLVIKRQ 90 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEE-EEEEECCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCE-EEEEEcCC
Confidence 7888876 555 799999999999999999999999999999999999999999999999996666 99987654
No 132
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.58 E-value=2.3e-15 Score=108.77 Aligned_cols=72 Identities=22% Similarity=0.269 Sum_probs=62.8
Q ss_pred CCcEEEEEEe-CCc--EEEEeeCCCccHHHHHHHHHHH-hCCC-CccEEEEECceeccccccccccc--CCCCCCEEEEE
Q 045158 82 HDKIHIIIKF-PSR--KFNIDVDRTDTVRSLKEKIHII-DGTP-IKRMLLFFSGIELDDEFRNLSEY--GIREFSEIIVF 154 (252)
Q Consensus 82 ~~~~~i~v~~-~g~--~~~l~v~~~~TV~~lK~~I~~~-~gip-~~~q~L~~~g~~L~~d~~~L~~y--~i~~~s~i~l~ 154 (252)
...|+|+|+. +++ .+++++++++||.+||++|+++ .|+| +++|+|+|+|+.|+ |+.+|++| +|+++++|+|+
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~-D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLP-DHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEEC-TTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECC-CCCCHHHHhcCCCCCCEEEeC
Confidence 4569999994 666 6799999999999999999996 4666 59999999999996 89999999 99999999974
No 133
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=108.45 Aligned_cols=72 Identities=15% Similarity=0.269 Sum_probs=66.2
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEee--cCeeecCCccccccCCCCCCEEEEecCeecCCCC
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIH--KQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGGY 252 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~--~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~~ 252 (252)
+++|++++++|++++||++||++|++++|||+++|+|+| .|+ |+|+.+|.+|+|++|++|+|+-..+++.|+
T Consensus 15 k~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~~~~~ 88 (100)
T 2dzm_A 15 EYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLPPPSS 88 (100)
T ss_dssp ECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSCCCCS
T ss_pred EeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCCCCcc
Confidence 588999999999999999999999999999999999986 555 899999999999999999999888877663
No 134
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=1e-14 Score=104.86 Aligned_cols=71 Identities=17% Similarity=0.083 Sum_probs=64.9
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCC-CCccccccccCCcEEEEEecCCC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDG-LDMEDYPIVKEGTKIDLTINPFL 75 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~t~i~l~~~~~~ 75 (252)
|+|+|+. +|+.+.++|++++||.+||.+|++.. +++|+|+|+|+.|+|+ .+|++|+|.++++ |||+++++.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~-i~l~~~~~~ 80 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCV-IHCHRSPPG 80 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEE-EEEECCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCE-EEEEECCCC
Confidence 7899965 89999999999999999999999988 8899999999999999 9999999997766 999987654
No 135
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=1e-14 Score=107.15 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=66.6
Q ss_pred CCcEEEEEEe-CC---cEEEEeeC--------C-CccHHHHHHHHHHHh--CCCCcc-EEEEECceecccccccccccCC
Q 045158 82 HDKIHIIIKF-PS---RKFNIDVD--------R-TDTVRSLKEKIHIID--GTPIKR-MLLFFSGIELDDEFRNLSEYGI 145 (252)
Q Consensus 82 ~~~~~i~v~~-~g---~~~~l~v~--------~-~~TV~~lK~~I~~~~--gip~~~-q~L~~~g~~L~~d~~~L~~y~i 145 (252)
...|+|+|+. .+ +.+.++++ + ++||.+||++|++.+ |+|+++ |+|+|+|+.|+ |+.+|++|+|
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~-D~~tL~~y~i 88 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLK-DDQTLDFYGI 88 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECC-TTCBHHHHTC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECC-CCCcHHHcCC
Confidence 3458999995 56 68999954 4 499999999999999 999999 99999999996 8899999999
Q ss_pred CCCCEEEEEeee
Q 045158 146 REFSEIIVFLKT 157 (252)
Q Consensus 146 ~~~s~i~l~~~~ 157 (252)
++|++|||+.++
T Consensus 89 ~~g~~i~lv~~~ 100 (107)
T 1x1m_A 89 QPGSTVHVLRKS 100 (107)
T ss_dssp CTTCEEEEEESS
T ss_pred CCCCEEEEEeCC
Confidence 999999999853
No 136
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=2.8e-15 Score=107.79 Aligned_cols=73 Identities=23% Similarity=0.350 Sum_probs=68.1
Q ss_pred CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
...|+|+|++.++.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.| +|. +|++|+|+++++|+|+.+
T Consensus 15 ~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~-tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDK-TLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSS-BHHHHCCCTTEEEEECCS
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcC-cHHHCCCCCCCEEEEEec
Confidence 4568999999899999999999999999999999999999999999999999 575 999999999999999874
No 137
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.56 E-value=2.2e-16 Score=119.83 Aligned_cols=71 Identities=34% Similarity=0.540 Sum_probs=0.0
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gst-i~l~~r 72 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72 (128)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCE-EEEEEE
Confidence 8999965 8999999999999999999999999999999999999999999999999999997777 877654
No 138
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.56 E-value=9.2e-15 Score=108.15 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=65.6
Q ss_pred cceeeEEeeeeccCCceEEEEecC-CCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158 169 RLSFKVQTSSSLLNGASIPLEMQD-SSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 169 ~~~i~v~~~~~~~~g~~~~l~v~~-~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~ 243 (252)
.|+++|+... ..+|+++.++|++ ++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+
T Consensus 27 ~i~i~Vk~~~-~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~ 101 (111)
T 1we6_A 27 PATIRVSKPN-ENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLS 101 (111)
T ss_dssp CEEEEECCTT-CSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEE
T ss_pred cEEEEEEecc-cCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 3677775310 0168999999998 999999999999999999999999999999999999999999999999997
No 139
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.56 E-value=2.2e-14 Score=102.89 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=64.1
Q ss_pred cCCcEEEEEEe-CC--cEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEEC--ce---ecccccccccccCCCCCCEEE
Q 045158 81 QHDKIHIIIKF-PS--RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFS--GI---ELDDEFRNLSEYGIREFSEII 152 (252)
Q Consensus 81 ~~~~~~i~v~~-~g--~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~--g~---~L~~d~~~L~~y~i~~~s~i~ 152 (252)
..+.+.|+|+. .+ +.+++++++++||++||++|++++|+|+++|+|+|. |+ .|.+|+++|++|+|++|++|+
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 45667888884 23 479999999999999999999999999999999997 44 453599999999999999999
Q ss_pred EE
Q 045158 153 VF 154 (252)
Q Consensus 153 l~ 154 (252)
|+
T Consensus 92 lv 93 (95)
T 2kjr_A 92 VV 93 (95)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 140
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=106.82 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=62.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
.+..++++++++.||.+||++++.++++|+++|+|+|+|+.|.|+.||++|||+++.| |||.++..
T Consensus 25 ~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~T-IhLvi~s~ 90 (118)
T 2daf_A 25 VGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEI-VQVEIFST 90 (118)
T ss_dssp TCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCE-EEEEEEES
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCE-EEEEEecC
Confidence 6888999999999999999999999999999999999999999999999999998888 99998754
No 141
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=1.1e-14 Score=106.96 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=64.8
Q ss_pred CEEEEEe-CC---eEEEEEec--------C-CCcHHHHHHHHHHHh--CCCCCc-eEEEEcCeecCCCCCccccccccCC
Q 045158 1 MRIIIVA-NG---HEFVLEVG--------L-QEPVLEIKRKIEQIF--NIPATS-QTLAVSGWELVDGLDMEDYPIVKEG 64 (252)
Q Consensus 1 M~v~v~~-~g---~~~~l~v~--------~-~~tV~~lK~~I~~~~--~i~~~~-q~L~~~g~~L~d~~~L~~~~i~~~~ 64 (252)
|+|+|+. ++ +.+.+++. + ++||.+||++|++.+ |+|+++ |+|+|+|+.|+|+.+|++|+|.+++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7889977 66 68999954 4 499999999999999 999999 9999999999999999999999777
Q ss_pred cEEEEEecCC
Q 045158 65 TKIDLTINPF 74 (252)
Q Consensus 65 t~i~l~~~~~ 74 (252)
+ |||+.++.
T Consensus 93 ~-i~lv~~~~ 101 (107)
T 1x1m_A 93 T-VHVLRKSW 101 (107)
T ss_dssp E-EEEEESSC
T ss_pred E-EEEEeCCC
Confidence 7 99988654
No 142
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=2e-14 Score=103.31 Aligned_cols=72 Identities=24% Similarity=0.209 Sum_probs=66.2
Q ss_pred CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceeccccc-ccccccCCCCCCEEEEEeee
Q 045158 82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEF-RNLSEYGIREFSEIIVFLKT 157 (252)
Q Consensus 82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~-~~L~~y~i~~~s~i~l~~~~ 157 (252)
...|+|+|+ ..|+.+.++|++++||.+||++|++.. +++|+|+|+|+.|+ |+ .+|++|+|++|++|||++++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~-D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQ-DPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECC-CSSCBTTTTTCCTTEEEEEECCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEcc-CCcCCHHHcCCCCCCEEEEEECC
Confidence 456999999 579999999999999999999999987 89999999999996 77 99999999999999999853
No 143
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.55 E-value=2e-14 Score=107.04 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=61.1
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~ 243 (252)
++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv 105 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLA 105 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEE
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 569999999999999999999999999999999999999999999999999999999999996
No 144
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.55 E-value=1.6e-14 Score=101.70 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=62.0
Q ss_pred EEEEEe---CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEE-------cCeecCCCCCccccccccCCcEEEEEe
Q 045158 2 RIIIVA---NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAV-------SGWELVDGLDMEDYPIVKEGTKIDLTI 71 (252)
Q Consensus 2 ~v~v~~---~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~-------~g~~L~d~~~L~~~~i~~~~t~i~l~~ 71 (252)
+|.|+. +.+.+.+.+++++||++||++|+.++|+|+++|+|+| .|+.|+|+.+|++|||.++++ |||+-
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~-ihlvd 82 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFV-IHVVD 82 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCE-EEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCE-EEEEe
Confidence 455543 5566789999999999999999999999999999996 588999999999999997777 99985
Q ss_pred cCC
Q 045158 72 NPF 74 (252)
Q Consensus 72 ~~~ 74 (252)
..|
T Consensus 83 ~~P 85 (86)
T 4b6w_A 83 LQP 85 (86)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 145
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.55 E-value=1.3e-14 Score=104.03 Aligned_cols=74 Identities=15% Similarity=0.063 Sum_probs=62.4
Q ss_pred cceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeec--Ce---ee-cCCccccccCCCCCCEEEE
Q 045158 169 RLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHK--QR---IM-RDNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 169 ~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~--g~---~l-~d~~tL~~y~I~~gsti~l 242 (252)
-+.++|.. ....++.+++++++++||++||++|++++|+|+++|+|+|. |+ .| +|+++|++|||++|+||+|
T Consensus 15 ~v~l~It~--s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 15 FIKVNVSN--SHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEEE--SSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred eEEEEEEE--CCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 35555543 23345689999999999999999999999999999999997 44 44 8999999999999999999
Q ss_pred ec
Q 045158 243 FK 244 (252)
Q Consensus 243 ~~ 244 (252)
++
T Consensus 93 vD 94 (95)
T 2kjr_A 93 VD 94 (95)
T ss_dssp EE
T ss_pred EC
Confidence 75
No 146
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=5.7e-15 Score=106.72 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=63.8
Q ss_pred cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE--CceecccccccccccCCCCCCEEEEEeee
Q 045158 84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF--SGIELDDEFRNLSEYGIREFSEIIVFLKT 157 (252)
Q Consensus 84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~--~g~~L~~d~~~L~~y~i~~~s~i~l~~~~ 157 (252)
.|.+++. ++|+++++++++++||++||++|++++|||+++|+|++ +|+ |+ |+.+|++|+|++|++|||++.+
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~-D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VE-DSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CC-TTSBHHHHCCCSEEEEEECCSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CC-CcCCHHHcCCCCCCEEEEEecC
Confidence 3555554 89999999999999999999999999999999999986 555 85 8899999999999999998853
No 147
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.54 E-value=4.6e-16 Score=121.02 Aligned_cols=70 Identities=34% Similarity=0.546 Sum_probs=0.0
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI 71 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~ 71 (252)
|+|+|+. +|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gst-L~Lvl 71 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVL 71 (152)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCE-EEEEe
Confidence 8999965 8999999999999999999999999999999999999999999999999999997777 77664
No 148
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.53 E-value=1.4e-14 Score=104.24 Aligned_cols=66 Identities=12% Similarity=-0.007 Sum_probs=59.2
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecC---ee----ecCCccccccCCCCCCEEEEecC
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ---RI----MRDNCSLRWHGVEYGDILYVFKG 245 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g---~~----l~d~~tL~~y~I~~gsti~l~~~ 245 (252)
...++.+++++++++||++||++|++++|+|+++|+|+|.| +. ++|+++|.+|+|++|++|+|+..
T Consensus 23 ~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 23 NLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL 95 (97)
T ss_dssp TSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred CCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence 34456899999999999999999999999999999999987 33 58999999999999999999864
No 149
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.52 E-value=4.7e-14 Score=101.45 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=62.3
Q ss_pred CcEEEEEEeC---CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECce---e---cccccccccccCCCCCCEEEE
Q 045158 83 DKIHIIIKFP---SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGI---E---LDDEFRNLSEYGIREFSEIIV 153 (252)
Q Consensus 83 ~~~~i~v~~~---g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~---~---L~~d~~~L~~y~i~~~s~i~l 153 (252)
+.+.++|..+ +..+++++++++||++||++|++++|+|+++|+|+|.|+ . |.+|+++|++|+|++|++|+|
T Consensus 13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 3466777742 347999999999999999999999999999999999883 3 435899999999999999998
Q ss_pred Ee
Q 045158 154 FL 155 (252)
Q Consensus 154 ~~ 155 (252)
+-
T Consensus 93 vd 94 (97)
T 2kj6_A 93 ID 94 (97)
T ss_dssp EE
T ss_pred Ee
Confidence 75
No 150
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.7e-14 Score=102.07 Aligned_cols=68 Identities=21% Similarity=0.241 Sum_probs=59.1
Q ss_pred CEEEEEe-CCeEE--EE-EecCCCcHHHHHHHHHHH-hCCCCCceEEEEc--CeecCCCCCccccccccCCcEEEE
Q 045158 1 MRIIIVA-NGHEF--VL-EVGLQEPVLEIKRKIEQI-FNIPATSQTLAVS--GWELVDGLDMEDYPIVKEGTKIDL 69 (252)
Q Consensus 1 M~v~v~~-~g~~~--~l-~v~~~~tV~~lK~~I~~~-~~i~~~~q~L~~~--g~~L~d~~~L~~~~i~~~~t~i~l 69 (252)
|+|+|+. +|+.+ ++ +|+|++||.+||++|++. .|+|+++|+|+|. |+.|+|+.+|++|+|.++++ |++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~st-l~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTAT-LYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEE-EEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCE-EEE
Confidence 7899965 66654 58 999999999999999995 8999999999976 99999999999999997666 553
No 151
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=5e-14 Score=99.69 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=60.8
Q ss_pred ceeeEEeeeeccCCceE--EE-EecCCCcHHHHHHHHhh-cCCCCCCceEEeec--CeeecCCccccccCCCCCCEEEE
Q 045158 170 LSFKVQTSSSLLNGASI--PL-EMQDSSTVNELRHLLLS-SKILPREDYIFIHK--QRIMRDNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 170 ~~i~v~~~~~~~~g~~~--~l-~v~~~~tV~~Lk~~i~~-~~gip~~~~~l~~~--g~~l~d~~tL~~y~I~~gsti~l 242 (252)
|+|+|+ +..|+.+ .+ +|++++||++||++|++ +.|+|+++|+|+|. |+.|+|+.||++|+|++|++|++
T Consensus 11 M~I~Vk----~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEIL----DAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEE----ESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEE----CCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 666665 4667665 48 99999999999999999 68999999999976 89999999999999999999986
No 152
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.4e-13 Score=100.78 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=67.1
Q ss_pred CcEEEEEE-e-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158 83 DKIHIIIK-F-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT 157 (252)
Q Consensus 83 ~~~~i~v~-~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~ 157 (252)
..+.|.|+ . +++.+.++++++.||++||++++...++|+++|+|+|+|+.|. |+.||.+|||++|.+|||+.+.
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLK-D~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILK-NNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEEC-SSCCHHHHSCCSSCEEEEEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcC-CcchHHHcCCCCCCEEEEEEec
Confidence 34667776 3 4778999999999999999999999999999999999999995 9999999999999999999864
No 153
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.49 E-value=1.1e-15 Score=122.23 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=1.5
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD 163 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~ 163 (252)
|+|+|+ ++|++++++|++++||.+||++|++.+|+|+++|+|+|+|++|+ |+.+|+ ++|+|||++ |++|
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~Le-D~~TLs-----~~STLhLvl----RLrG 70 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAP-NTELVT-----DDVTYYLSL----KLLG 70 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECC-CCCccc-----CCCEEEEEE----ecCC
Confidence 789999 68999999999999999999999999999999999999999996 889998 999999999 7888
Q ss_pred CCcc
Q 045158 164 NPPI 167 (252)
Q Consensus 164 ~~~~ 167 (252)
|...
T Consensus 71 G~~k 74 (189)
T 2xzm_9 71 GKKK 74 (189)
T ss_dssp -CCC
T ss_pred Cccc
Confidence 7653
No 154
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.47 E-value=1.5e-13 Score=118.05 Aligned_cols=75 Identities=28% Similarity=0.550 Sum_probs=70.4
Q ss_pred cCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 81 QHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 81 ~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
..+.|+|+|+ ..|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|+|+++++|+|+++
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~-D~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEEC-
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecC-CCCCHHHcCCCCCCEEEEEEe
Confidence 4678999999 47999999999999999999999999999999999999999996 889999999999999999983
No 155
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.44 E-value=2.4e-13 Score=97.60 Aligned_cols=72 Identities=24% Similarity=0.259 Sum_probs=61.9
Q ss_pred cEEEEEEeCCc--EEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc---ee---cccccccccccCCCCCCEEEEEe
Q 045158 84 KIHIIIKFPSR--KFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG---IE---LDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 84 ~~~i~v~~~g~--~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g---~~---L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.+.|+|+..+. .+.+++++++||++||++|++++|+|+++|+|+|.| +. |.+|+.+|++|+|++|++|||..
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 36677775444 689999999999999999999999999999999986 43 42488999999999999999875
No 156
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.44 E-value=2.5e-13 Score=116.67 Aligned_cols=71 Identities=34% Similarity=0.543 Sum_probs=65.8
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
|+|+|+. +|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gst-L~LvlR 305 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 305 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCE-EEEEC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCE-EEEEEe
Confidence 7889976 8999999999999999999999999999999999999999999999999999997777 888753
No 157
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.43 E-value=3.1e-13 Score=97.04 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=59.3
Q ss_pred EEEEEeCCe--EEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC---ee----cCCCCCccccccccCCcEEEEEe
Q 045158 2 RIIIVANGH--EFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG---WE----LVDGLDMEDYPIVKEGTKIDLTI 71 (252)
Q Consensus 2 ~v~v~~~g~--~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g---~~----L~d~~~L~~~~i~~~~t~i~l~~ 71 (252)
.|+|+..+. .+.+++++++||++||++|+..+|+|+++|+|+|+| +. ++|+.+|++|||.++++ ||+.-
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~-l~v~d 86 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCR-IHVID 86 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCE-EEEBC
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCE-EEEEE
Confidence 455665544 689999999999999999999999999999999986 43 58999999999997777 88864
No 158
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.42 E-value=7.2e-13 Score=99.50 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=63.0
Q ss_pred CcEEEEEEeCCc--EEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc---e---ecccccccccccCCCCCCEEEEE
Q 045158 83 DKIHIIIKFPSR--KFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG---I---ELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 83 ~~~~i~v~~~g~--~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g---~---~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
..+.|+|+..+. .+.+++++++||++||++|+.++|+|+++|+|+|.| + .|.+|+.+|++|+|++|++|||.
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 356777775444 688999999999999999999999999999999977 3 34358899999999999999998
Q ss_pred e
Q 045158 155 L 155 (252)
Q Consensus 155 ~ 155 (252)
.
T Consensus 85 d 85 (122)
T 1t0y_A 85 D 85 (122)
T ss_dssp E
T ss_pred e
Confidence 6
No 159
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.42 E-value=3e-13 Score=119.26 Aligned_cols=73 Identities=23% Similarity=0.325 Sum_probs=66.2
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHH---HhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQ---IFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP 73 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~---~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~ 73 (252)
|+|+|+. +|+++.|+|++++||.+||.+|+. +.|+|+++|+|+|+|+.|+|+.+|++|+|.++++.++|+.++
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 8899977 799999999999999999999999 577999999999999999999999999999888843666654
No 160
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.42 E-value=1.6e-14 Score=115.46 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=0.0
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI 71 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~ 71 (252)
|+|+|+. +|++++++|++++||.+||.+|++.+|+|+++|+|+|+|++|+|+.+|+ ++++ |||++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~ST-LhLvl 66 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVT-YYLSL 66 (189)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCE-EEEEE
Confidence 8999964 8999999999999999999999999999999999999999999999999 4777 77764
No 161
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=1.1e-12 Score=93.73 Aligned_cols=79 Identities=14% Similarity=0.249 Sum_probs=72.2
Q ss_pred CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158 82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR 160 (252)
Q Consensus 82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~ 160 (252)
+..|+|.|+ .+|+.+.++|.+++++..|+++++++.|+|+++|+|+|+|+.|. +..|.++|++.+|++|++++ +
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~----~ 79 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQ----Q 79 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTCEEEEEE----C
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEE----e
Confidence 345889999 58899999999999999999999999999999999999999996 88999999999999999999 6
Q ss_pred cCCCC
Q 045158 161 LRDNP 165 (252)
Q Consensus 161 ~~~~~ 165 (252)
++||.
T Consensus 80 ~~GG~ 84 (94)
T 2io1_B 80 QTGGV 84 (94)
T ss_dssp CEESC
T ss_pred ccCCC
Confidence 77774
No 162
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=1e-12 Score=93.94 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=69.6
Q ss_pred ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCee
Q 045158 168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTV 247 (252)
Q Consensus 168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~ 247 (252)
..|++.|+ ...|+.+.+.|.++++++.|++.++++.|+|+++++|+|+|+.|++++|+++|++++||+|+++..-.
T Consensus 6 ~~i~ikVk----~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~ 81 (94)
T 2io1_B 6 DHINLKVA----GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 81 (94)
T ss_dssp CEEEEEEE----CTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCE
T ss_pred CeEEEEEE----CCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 44677765 35789999999999999999999999999999999999999999999999999999999999986544
Q ss_pred cC
Q 045158 248 SR 249 (252)
Q Consensus 248 ~~ 249 (252)
.|
T Consensus 82 GG 83 (94)
T 2io1_B 82 GG 83 (94)
T ss_dssp ES
T ss_pred CC
Confidence 33
No 163
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.39 E-value=5.4e-13 Score=97.90 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=63.0
Q ss_pred ccceeeEEeeeeccCCceEEEEec-CCCcHHHHHHHHhhcCCCCCCceEEeecCe-----------e----ecCCccccc
Q 045158 168 RRLSFKVQTSSSLLNGASIPLEMQ-DSSTVNELRHLLLSSKILPREDYIFIHKQR-----------I----MRDNCSLRW 231 (252)
Q Consensus 168 ~~~~i~v~~~~~~~~g~~~~l~v~-~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~-----------~----l~d~~tL~~ 231 (252)
.+|.|+|+ ..+|+. .++|+ +++||++||++|++++|+|+++|+|++.++ . ++|+.+|.+
T Consensus 6 ~~M~irvr----s~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~ 80 (107)
T 1wf9_A 6 SGTMLRVR----SRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISS 80 (107)
T ss_dssp CCEEEEEE----CSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGG
T ss_pred CeEEEEEE----CCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHH
Confidence 34777776 356755 78999 999999999999999999999999998887 4 588999999
Q ss_pred cCCCCCCEEEEecC
Q 045158 232 HGVEYGDILYVFKG 245 (252)
Q Consensus 232 y~I~~gsti~l~~~ 245 (252)
|||++||+|+|...
T Consensus 81 ~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 81 LNLAHGSMVYLAYE 94 (107)
T ss_dssp TCCCTTCEEECCCS
T ss_pred CCCCCCCEEEEEeC
Confidence 99999999999743
No 164
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.39 E-value=4.8e-13 Score=116.23 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=66.6
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEE---EcCeecCCCCCccccccccCCcEEEEEecCCC
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLA---VSGWELVDGLDMEDYPIVKEGTKIDLTINPFL 75 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~---~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~ 75 (252)
|.|+|+.+|+.+++++++++||++||++|++++|||+++|+|+ |+|+.|+|+.+|++|+|+++++ |+|+.++.+
T Consensus 6 i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~-l~L~gs~~~ 82 (320)
T 3shq_A 6 VVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK-LMMVGSTEA 82 (320)
T ss_dssp EEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CE-EEEECCCC-
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCE-EEEEccchh
Confidence 4677888999999999999999999999999999999999999 8999999999999999997777 999987664
No 165
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.38 E-value=5.8e-13 Score=117.47 Aligned_cols=73 Identities=27% Similarity=0.444 Sum_probs=66.4
Q ss_pred CcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHH---HhCCCCccEEEEECceecccccccccccCCCCCCEE-EEEee
Q 045158 83 DKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHI---IDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEI-IVFLK 156 (252)
Q Consensus 83 ~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~---~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i-~l~~~ 156 (252)
..|+|+||. .|+.+.++|++++||.+||.+|++ +.|+|+++|+|+|+|+.|+ |+.+|++|+|++|++| +|+.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~-D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEEC-SSSBTTTTCCCTTSCEEEEEEC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecC-CcCCHHHcCCCCCCEEEEEEec
Confidence 468999995 799999999999999999999999 5679999999999999996 8899999999999999 55553
No 166
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.38 E-value=1.5e-12 Score=97.69 Aligned_cols=71 Identities=13% Similarity=0.101 Sum_probs=59.8
Q ss_pred EEEEEeCCe--EEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC---e---e-cCCCCCccccccccCCcEEEEEec
Q 045158 2 RIIIVANGH--EFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG---W---E-LVDGLDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 2 ~v~v~~~g~--~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g---~---~-L~d~~~L~~~~i~~~~t~i~l~~~ 72 (252)
.|+|+..+. .+.+++++++||++||.+|+..+|+|+++|+|+|.| + . ++|+.+|++|||.++++ |||.-.
T Consensus 8 ~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~-ihvvd~ 86 (122)
T 1t0y_A 8 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYR-IHAVDV 86 (122)
T ss_dssp EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEE-EEEEEC
T ss_pred EEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCE-EEEEeC
Confidence 455655444 688999999999999999999999999999999987 3 2 47889999999997776 998864
Q ss_pred C
Q 045158 73 P 73 (252)
Q Consensus 73 ~ 73 (252)
.
T Consensus 87 ~ 87 (122)
T 1t0y_A 87 T 87 (122)
T ss_dssp T
T ss_pred C
Confidence 3
No 167
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.37 E-value=8.5e-13 Score=96.81 Aligned_cols=73 Identities=18% Similarity=0.109 Sum_probs=64.3
Q ss_pred cEEEEEEe-CCcEEEEeeC-CCccHHHHHHHHHHHhCCCCccEEEEECce-----------ec---ccccccccccCCCC
Q 045158 84 KIHIIIKF-PSRKFNIDVD-RTDTVRSLKEKIHIIDGTPIKRMLLFFSGI-----------EL---DDEFRNLSEYGIRE 147 (252)
Q Consensus 84 ~~~i~v~~-~g~~~~l~v~-~~~TV~~lK~~I~~~~gip~~~q~L~~~g~-----------~L---~~d~~~L~~y~i~~ 147 (252)
.|.|+|+. .|+. .++|+ +++||.+||++|++++|+|+++|+|.+.|+ .| .+|+.+|++|+|++
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 48999994 6654 78999 999999999999999999999999999888 43 25889999999999
Q ss_pred CCEEEEEeee
Q 045158 148 FSEIIVFLKT 157 (252)
Q Consensus 148 ~s~i~l~~~~ 157 (252)
|++|||....
T Consensus 86 G~~L~l~~~~ 95 (107)
T 1wf9_A 86 GSMVYLAYEG 95 (107)
T ss_dssp TCEEECCCSS
T ss_pred CCEEEEEeCC
Confidence 9999998754
No 168
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.34 E-value=1.3e-12 Score=113.48 Aligned_cols=74 Identities=18% Similarity=0.345 Sum_probs=67.6
Q ss_pred CcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE---ECceecccccccccccCCCCCCEEEEEeee
Q 045158 83 DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF---FSGIELDDEFRNLSEYGIREFSEIIVFLKT 157 (252)
Q Consensus 83 ~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~---~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~ 157 (252)
..+.|.|+++|+.+.+++++++||++||++|++.+|+|+++|+|+ |+|+.|. |+.+|++|+|++|++|+|+-++
T Consensus 4 ~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~-D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 4 KEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAA-DNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCC-TTSBTTSSCCC--CEEEEECCC
T ss_pred ceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccC-ccccHHHcCCCCCCEEEEEccc
Confidence 458899999999999999999999999999999999999999999 8999996 8899999999999999998754
No 169
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=9.3e-12 Score=88.35 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=68.4
Q ss_pred cceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeec
Q 045158 169 RLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVS 248 (252)
Q Consensus 169 ~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~ 248 (252)
.|.+.|+ ...|+.+.+.|.++++++.|++..+++.|+|+++++|+|+|+.|+++.|.++|++++||+|.++.....
T Consensus 5 ~i~ikVk----~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 5 HINLKVA----GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp EEEEEEE----CTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred eEEEEEE----CCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 4666665 357899999999999999999999999999999999999999999999999999999999999865443
No 170
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=2.1e-11 Score=86.49 Aligned_cols=78 Identities=14% Similarity=0.247 Sum_probs=71.5
Q ss_pred CcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecccc
Q 045158 83 DKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL 161 (252)
Q Consensus 83 ~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~ 161 (252)
..|.|.|+ .+|+.+.+.|.+++++..|+.+.+++.|+|++.++|+|+|+.|. +..|.++|++.+|++|++++ ++
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~----~q 78 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQ----QQ 78 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECC-TTCCTTTTTCCTTEEEEEEE----CC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEE----ec
Confidence 45788888 57899999999999999999999999999999999999999996 88999999999999999998 56
Q ss_pred CCCC
Q 045158 162 RDNP 165 (252)
Q Consensus 162 ~~~~ 165 (252)
+||+
T Consensus 79 ~gg~ 82 (91)
T 2io0_B 79 TGGV 82 (91)
T ss_dssp CCCC
T ss_pred cCCc
Confidence 6663
No 171
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.29 E-value=5.1e-12 Score=88.92 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=59.1
Q ss_pred CEEEEEe-CCeEEEEE-ecCCCcHHHHHHHHHHHhCCCCCceEEEEc--CeecC---CCCCccccccccCCcEEEEEe
Q 045158 1 MRIIIVA-NGHEFVLE-VGLQEPVLEIKRKIEQIFNIPATSQTLAVS--GWELV---DGLDMEDYPIVKEGTKIDLTI 71 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~-v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~--g~~L~---d~~~L~~~~i~~~~t~i~l~~ 71 (252)
|+|.|+. +|+ ..++ +++++||.+||++|++++|+|+++|+|+|+ ++.|+ |+.+|++|||.++++ |++.-
T Consensus 1 m~i~vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~-l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDM-LIVEE 76 (86)
T ss_dssp CCEEEEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCE-EECCC
T ss_pred CEEEEEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCE-EEEEe
Confidence 8999987 564 5588 999999999999999999999999999987 47774 678999999997766 77653
No 172
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.26 E-value=2.4e-11 Score=84.02 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=66.2
Q ss_pred cccceeeEEeeeeccCCc-eEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158 167 IRRLSFKVQTSSSLLNGA-SIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 167 ~~~~~i~v~~~~~~~~g~-~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~ 243 (252)
...|.+.|+ ...|+ .+.+.|.++++++.|++..+++.|+|+++++|+|+|+.|.++.|.++|++++||+|.++
T Consensus 5 ~~~i~ikV~----~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQ----GKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEE----CSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEE----eCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 345777775 35685 89999999999999999999999999999999999999999999999999999999985
No 173
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.26 E-value=8.9e-12 Score=87.68 Aligned_cols=71 Identities=18% Similarity=0.144 Sum_probs=60.6
Q ss_pred EEEEEEe-CCcEEEEe-eCCCccHHHHHHHHHHHhCCCCccEEEEECc--eecc--cccccccccCCCCCCEEEEEee
Q 045158 85 IHIIIKF-PSRKFNID-VDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG--IELD--DEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 85 ~~i~v~~-~g~~~~l~-v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g--~~L~--~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
|+|.|++ +|+ ..+. +++++||.+||++|++++|+|+++|+|.|++ +.|. +|+.+|++|||.+|++|+|...
T Consensus 1 m~i~vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 6789996 554 4577 9999999999999999999999999999874 7773 3678999999999999998753
No 174
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.23 E-value=6.8e-11 Score=84.32 Aligned_cols=78 Identities=14% Similarity=0.260 Sum_probs=68.9
Q ss_pred CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158 82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR 160 (252)
Q Consensus 82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~ 160 (252)
...|.|.|+ .+|+.+.+.|.+++++..|+.+.+++.|+|++.++|+|.|+.|. +..|..+|++.+|++|++++ +
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~dl~medgD~Idv~~----~ 89 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQ----Q 89 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEE----C
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcC-CCCCHHHcCCCCCCEEEEEe----e
Confidence 345788888 57888999999999999999999999999999999999999996 88999999999999999998 4
Q ss_pred cCCC
Q 045158 161 LRDN 164 (252)
Q Consensus 161 ~~~~ 164 (252)
++||
T Consensus 90 q~GG 93 (93)
T 2d07_B 90 QTGG 93 (93)
T ss_dssp C---
T ss_pred ccCC
Confidence 5553
No 175
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.22 E-value=4.6e-11 Score=85.96 Aligned_cols=73 Identities=19% Similarity=0.329 Sum_probs=62.4
Q ss_pred cEEEEEEe----CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc-------eecccccccccccCCCCCCEEE
Q 045158 84 KIHIIIKF----PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG-------IELDDEFRNLSEYGIREFSEII 152 (252)
Q Consensus 84 ~~~i~v~~----~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g-------~~L~~d~~~L~~y~i~~~s~i~ 152 (252)
.+.|+|+. +++.+...+.++.||.+||.+|+..+|+|+..|+|.|.+ ..|.+|..+|++|++.+|++||
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~ 88 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL 88 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence 45666652 467889999999999999999999999999999999863 3476789999999999999999
Q ss_pred EEee
Q 045158 153 VFLK 156 (252)
Q Consensus 153 l~~~ 156 (252)
+...
T Consensus 89 V~d~ 92 (97)
T 1wjn_A 89 VRWS 92 (97)
T ss_dssp EECC
T ss_pred EEec
Confidence 9863
No 176
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.21 E-value=4e-11 Score=81.42 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=61.1
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~ 243 (252)
...|+.+.+.|.++++++.|++..+++.|+|+++++|+|+|+.|+++.|.++|++++||+|.++
T Consensus 8 ~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 8 GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp CTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred CCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 3578999999999999999999999999999999999999999999999999999999999986
No 177
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.19 E-value=1e-10 Score=79.42 Aligned_cols=69 Identities=14% Similarity=0.269 Sum_probs=64.9
Q ss_pred EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158 85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
|.|.|+ .+|+.+.+.+.+++++..|+.+.+++.|+|++.++++|+|+.|. +..|.++|++.+|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECC-TTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEE
Confidence 678888 57899999999999999999999999999999999999999996 8899999999999999986
No 178
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.18 E-value=7.6e-11 Score=85.63 Aligned_cols=79 Identities=15% Similarity=0.290 Sum_probs=72.3
Q ss_pred CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158 82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR 160 (252)
Q Consensus 82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~ 160 (252)
...|.|.|+ .+|+.+.+.|.+++++..|+.+.+++.|+|++.++|+|.|+.|. +..|..+|++.+|++|++++ +
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~----~ 96 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQ----Q 96 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCC-TTSCTTTTTCCTTEEEEECC----C
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEE----e
Confidence 456889998 57889999999999999999999999999999999999999996 88999999999999999998 6
Q ss_pred cCCCC
Q 045158 161 LRDNP 165 (252)
Q Consensus 161 ~~~~~ 165 (252)
++||+
T Consensus 97 q~GG~ 101 (104)
T 1wz0_A 97 QTSGP 101 (104)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 66764
No 179
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.15 E-value=3.3e-10 Score=82.34 Aligned_cols=74 Identities=14% Similarity=0.252 Sum_probs=68.0
Q ss_pred cCCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 81 QHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 81 ~~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
....|.|.|+.+|+.+.+.|..++++..|+.+.+++.|++++.++|+|+|+.|. +..|.++|++.+|++|++++
T Consensus 28 ~~~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~-~~~Tp~dl~medgD~Idv~~ 101 (106)
T 2eke_C 28 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHR 101 (106)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcC-CCCCHHHcCCCCCCEEEEEe
Confidence 345677777776788999999999999999999999999999999999999996 88999999999999999998
No 180
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.15 E-value=1.6e-10 Score=82.41 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=66.5
Q ss_pred ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecC
Q 045158 168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKG 245 (252)
Q Consensus 168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~ 245 (252)
..|.+.|+ ...|+.+.+.|.+++++..|++..+++.|+|+++++|+|+|+.|.++.|.++|++++||+|.++..
T Consensus 16 ~~i~ikV~----~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 16 DHINLKVA----GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp CEEEEEEE----CTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CeEEEEEE----CCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEee
Confidence 34566665 357888999999999999999999999999999999999999999999999999999999998743
No 181
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.14 E-value=3.5e-10 Score=78.12 Aligned_cols=72 Identities=14% Similarity=0.253 Sum_probs=66.4
Q ss_pred CCcEEEEEE-eCCc-EEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158 82 HDKIHIIIK-FPSR-KFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 82 ~~~~~i~v~-~~g~-~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
+..|.|.|+ .+|+ .+.+.|.+++++..|+.+.+++.|+|+++++|+|.|+.|. +..|.++|++.+|++|++.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLS-GKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECC-SCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence 446889999 5785 8999999999999999999999999999999999999996 8899999999999999975
No 182
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.12 E-value=1.3e-10 Score=84.34 Aligned_cols=78 Identities=14% Similarity=0.217 Sum_probs=68.7
Q ss_pred ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCee
Q 045158 168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTV 247 (252)
Q Consensus 168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~ 247 (252)
..|.+.|+ ...|+.+.+.|.+++++..|++..+++.|+|+++++|+|+|+.|.++.|.++|++++||+|+++.- .
T Consensus 23 ~~I~IkVk----~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~-q 97 (104)
T 1wz0_A 23 DHINLKVA----GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ-Q 97 (104)
T ss_dssp CCEEEEEE----CSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCC-C
T ss_pred CeEEEEEE----CCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe-c
Confidence 44666665 357889999999999999999999999999999999999999999999999999999999999743 3
Q ss_pred cCC
Q 045158 248 SRG 250 (252)
Q Consensus 248 ~~~ 250 (252)
+||
T Consensus 98 ~GG 100 (104)
T 1wz0_A 98 TSG 100 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 444
No 183
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.10 E-value=1.9e-10 Score=84.29 Aligned_cols=79 Identities=11% Similarity=0.223 Sum_probs=72.1
Q ss_pred cCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecc
Q 045158 81 QHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMN 159 (252)
Q Consensus 81 ~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~ 159 (252)
....|.|.|+ .+|+.+.+.|.+++++..|+.+.+++.|+|+++++|+|.|+.|. +..|..+|++.+|++|++++
T Consensus 23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~-~~~Tp~dl~mEDgD~Idv~~---- 97 (110)
T 2k8h_A 23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPID-ETKTPEELGMEDDDVIDAMV---- 97 (110)
T ss_dssp CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCC-SSSHHHHHHCSSEEEEEEEC----
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEE----
Confidence 3456899999 57889999999999999999999999999999999999999996 88999999999999999998
Q ss_pred ccCCC
Q 045158 160 RLRDN 164 (252)
Q Consensus 160 ~~~~~ 164 (252)
.++||
T Consensus 98 ~q~Gg 102 (110)
T 2k8h_A 98 EQTGG 102 (110)
T ss_dssp CCCCC
T ss_pred cccCc
Confidence 56665
No 184
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.09 E-value=9.3e-10 Score=79.01 Aligned_cols=66 Identities=23% Similarity=0.250 Sum_probs=57.8
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecC-------eee-cCCccccccCCCCCCEEEEecCe
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ-------RIM-RDNCSLRWHGVEYGDILYVFKGT 246 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g-------~~l-~d~~tL~~y~I~~gsti~l~~~~ 246 (252)
.+|+.+...+..+.||++||.+|+..+|+|+..|+|.|.+ ..| +|+.+|.+|+|++|++|++....
T Consensus 20 ~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~ 93 (97)
T 1wjn_A 20 PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSG 93 (97)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecC
Confidence 5688899999999999999999999999999999999862 224 57789999999999999997643
No 185
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.08 E-value=1.5e-10 Score=84.78 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=67.7
Q ss_pred ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCe
Q 045158 168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGT 246 (252)
Q Consensus 168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~ 246 (252)
..|.+.|+ ...|+.+.+.|.+++++..|++..+++.|+|+++++|+|+|+.|.++.|.++|++++||+|.++...
T Consensus 25 ~~I~IkVk----~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q 99 (110)
T 2k8h_A 25 ALVAVKVV----NADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQ 99 (110)
T ss_dssp CCEEEEEE----ETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCC
T ss_pred CeEEEEEE----CCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcc
Confidence 34666665 3578899999999999999999999999999999999999999999999999999999999998553
No 186
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.08 E-value=3.7e-10 Score=82.13 Aligned_cols=73 Identities=11% Similarity=0.149 Sum_probs=66.2
Q ss_pred ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecC
Q 045158 168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKG 245 (252)
Q Consensus 168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~ 245 (252)
..|.+.|+ . .|+.+.+.|.+++++..|++..+++.|+|+++++|+|+|+.|+++.|.++|++++||+|.++..
T Consensus 30 ~~I~IkV~----~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 30 THINLKVS----D-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp SEEEEEEE----C-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CeEEEEEe----c-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEee
Confidence 34666654 4 6899999999999999999999999999999999999999999999999999999999998744
No 187
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.72 E-value=4.8e-08 Score=71.65 Aligned_cols=72 Identities=17% Similarity=0.305 Sum_probs=64.7
Q ss_pred cceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158 169 RLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 169 ~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
.+.+.|+ ...|..+.+.|.++++...|++..+++.|+|++.++|.|+|..++++.|.+++++++||+|.++.
T Consensus 40 ~I~LKV~----~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 40 YIKLKVI----GQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp EEEEEEE----CTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred eEEEEEE----cCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 3555554 24688889999999999999999999999999999999999999999999999999999999874
No 188
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.1e-07 Score=76.55 Aligned_cols=79 Identities=13% Similarity=0.223 Sum_probs=71.7
Q ss_pred cCCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158 81 QHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR 160 (252)
Q Consensus 81 ~~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~ 160 (252)
....++|.|+.+|+.+.+.+.+++++..|+...+++.|+|+.+++++|.|+.|. +..|..++++.+|++|++++ +
T Consensus 26 ~~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~-~~~TP~dL~MEdgD~Idv~~----~ 100 (200)
T 3pge_A 26 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHR----E 100 (200)
T ss_dssp CCCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEE----C
T ss_pred CCCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEe----c
Confidence 345578888778889999999999999999999999999999999999999996 88999999999999999998 5
Q ss_pred cCCC
Q 045158 161 LRDN 164 (252)
Q Consensus 161 ~~~~ 164 (252)
+.||
T Consensus 101 q~gg 104 (200)
T 3pge_A 101 QIGG 104 (200)
T ss_dssp CSCC
T ss_pred cCcC
Confidence 6555
No 189
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.70 E-value=4.4e-08 Score=78.87 Aligned_cols=77 Identities=12% Similarity=0.181 Sum_probs=68.2
Q ss_pred cceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeec
Q 045158 169 RLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVS 248 (252)
Q Consensus 169 ~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~ 248 (252)
.+++.|+ ..|+.+.+.|.+++++..|++..+++.|+|+++++|.|+|+.+.++.|.+++++++||+|.++.--+.
T Consensus 29 ~I~LkV~-----~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 29 HINLKVS-----DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp CEEEEEE-----CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred eEEEEEe-----cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence 3566663 36899999999999999999999999999999999999999999999999999999999999865544
Q ss_pred CC
Q 045158 249 RG 250 (252)
Q Consensus 249 ~~ 250 (252)
|+
T Consensus 104 g~ 105 (200)
T 3pge_A 104 GG 105 (200)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 190
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.69 E-value=4.1e-08 Score=77.69 Aligned_cols=77 Identities=12% Similarity=0.139 Sum_probs=67.3
Q ss_pred cceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeec
Q 045158 169 RLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVS 248 (252)
Q Consensus 169 ~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~ 248 (252)
.|.+.|. ..|..+.+.|.+++++..|++..+++.|+|+..++|.|+|+.+.++.|.+++++++||+|.++-- .+
T Consensus 57 ~InLKVk-----~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~le-Q~ 130 (207)
T 3tix_A 57 HINLKVS-----DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHRE-QI 130 (207)
T ss_dssp EEEEEEE-----CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCC-CC
T ss_pred cEEEEEe-----cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe-cc
Confidence 3555553 36899999999999999999999999999999999999999999999999999999999998643 34
Q ss_pred CCC
Q 045158 249 RGG 251 (252)
Q Consensus 249 ~~~ 251 (252)
||+
T Consensus 131 GG~ 133 (207)
T 3tix_A 131 GGL 133 (207)
T ss_dssp TTG
T ss_pred CCC
Confidence 444
No 191
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.67 E-value=1.7e-07 Score=68.78 Aligned_cols=72 Identities=22% Similarity=0.371 Sum_probs=66.2
Q ss_pred CcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 83 DKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 83 ~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
..+.|.|+ .+|+.+.+.|.+++++..|+...+++.|+|+..++++|.|..|. +..|..++++.+|++|.+.+
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~-~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECC-TTCCTTTTTCCTTCEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECC-CCCCHHHcCCCCCCEEEEEe
Confidence 45677777 46888999999999999999999999999999999999999996 88999999999999999987
No 192
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.67 E-value=1.6e-07 Score=66.26 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=50.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecC--CCCCccccccccCCcEEEEE
Q 045158 8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELV--DGLDMEDYPIVKEGTKIDLT 70 (252)
Q Consensus 8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~--d~~~L~~~~i~~~~t~i~l~ 70 (252)
++..+.+.+.+.+||..+|++|++++|||+++|+|+|.|+.|. .+.....|.-...+..+.|.
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence 7888999999999999999999999999999999999997655 44455566544333334444
No 193
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.61 E-value=1.1e-07 Score=75.29 Aligned_cols=80 Identities=15% Similarity=0.260 Sum_probs=72.2
Q ss_pred CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecccc
Q 045158 82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL 161 (252)
Q Consensus 82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~ 161 (252)
...+.|.|+.+|+.+.+.|.+++++..|+...+++.|+|+..+++.|+|+.|. +..|..++++.+|++|++++ ++
T Consensus 55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~-~ddTPeDLdMEDGDtIDV~l----eQ 129 (207)
T 3tix_A 55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQ-ADQTPEDLDMEDNDIIEAHR----EQ 129 (207)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECC-SSCCTTTTTCCTTEEEEECC----CC
T ss_pred CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecC-CCCCHHHcCCCCCCEEEEEE----ec
Confidence 44577777767889999999999999999999999999999999999999996 88999999999999999998 67
Q ss_pred CCCCc
Q 045158 162 RDNPP 166 (252)
Q Consensus 162 ~~~~~ 166 (252)
.||..
T Consensus 130 ~GG~~ 134 (207)
T 3tix_A 130 IGGLP 134 (207)
T ss_dssp CTTGG
T ss_pred cCCCc
Confidence 77754
No 194
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.43 E-value=1.9e-07 Score=64.37 Aligned_cols=68 Identities=9% Similarity=0.062 Sum_probs=56.8
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCee-----cCCCCCccccccccCCcEEEE
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWE-----LVDGLDMEDYPIVKEGTKIDL 69 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~-----L~d~~~L~~~~i~~~~t~i~l 69 (252)
|.+.|+....++.+++++++|+.+|+.+|++.++++++.|.+.++-.+ +.++.+|+++||.+++. |.+
T Consensus 5 m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~-l~l 77 (80)
T 2pjh_A 5 IIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDL-LFL 77 (80)
T ss_dssp CCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCC-EEC
T ss_pred EEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCE-EEE
Confidence 567777777789999999999999999999999999999888776554 34677999999997777 543
No 195
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.34 E-value=2.8e-07 Score=63.49 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=58.3
Q ss_pred cEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECcee---c-ccccccccccCCCCCCEEEEE
Q 045158 84 KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIE---L-DDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 84 ~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~---L-~~d~~~L~~y~i~~~s~i~l~ 154 (252)
.|.|.|+.++.++.+++++++|+.+|+++|++.+++|++.|.+.++..+ | ..++.+|+++||++|+.|.+.
T Consensus 4 ~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 4777888766688899999999999999999999999998887765443 3 126789999999999999864
No 196
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.33 E-value=1.5e-06 Score=61.21 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=49.2
Q ss_pred eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecc-cccccccccCC-CCCCEEEEE
Q 045158 91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELD-DEFRNLSEYGI-REFSEIIVF 154 (252)
Q Consensus 91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~-~d~~~L~~y~i-~~~s~i~l~ 154 (252)
..+..+.+.+.+++||..+|++|++++|||+.+|+|+|.|+.|. +....-..|.- ...+-|.|+
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence 45778999999999999999999999999999999999997553 35555555543 333444444
No 197
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.30 E-value=9.3e-08 Score=76.66 Aligned_cols=79 Identities=11% Similarity=0.126 Sum_probs=1.3
Q ss_pred ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCee
Q 045158 168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTV 247 (252)
Q Consensus 168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~ 247 (252)
..|++.| . ..|+.+.+.|.++++...|++..+++.|+|++.++|.|+|+.+.++.|-+++++++||+|.++.- -
T Consensus 20 e~InLKV-~----qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~le-Q 93 (227)
T 3v7o_A 20 THINLKV-S----DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE-Q 93 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEEEEE-e----CCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEec-c
Confidence 4466666 2 36889999999999999999999999999999999999999999999999999999999998744 3
Q ss_pred cCCCC
Q 045158 248 SRGGY 252 (252)
Q Consensus 248 ~~~~~ 252 (252)
+||+|
T Consensus 94 ~GG~~ 98 (227)
T 3v7o_A 94 IGGLT 98 (227)
T ss_dssp --CCC
T ss_pred cCCch
Confidence 44443
No 198
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.25 E-value=1.4e-07 Score=75.61 Aligned_cols=79 Identities=13% Similarity=0.214 Sum_probs=1.2
Q ss_pred CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecccc
Q 045158 82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL 161 (252)
Q Consensus 82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~ 161 (252)
...|.|.|..+|+.+.+.+.+++++..|+...+++.|+|++.+++.|+|+.+. +..|..++++.+|++|+++. +.
T Consensus 19 ~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~-dddTPadL~MEDGDtIDV~l----eQ 93 (227)
T 3v7o_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHR----EQ 93 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecC-CCCCHHHcCCCCCCEEEEEe----cc
Confidence 44567777557888999999999999999999999999999999999999996 88999999999999999998 66
Q ss_pred CCCC
Q 045158 162 RDNP 165 (252)
Q Consensus 162 ~~~~ 165 (252)
.||.
T Consensus 94 ~GG~ 97 (227)
T 3v7o_A 94 IGGL 97 (227)
T ss_dssp --CC
T ss_pred cCCc
Confidence 6764
No 199
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.21 E-value=1.4e-05 Score=53.60 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=61.1
Q ss_pred EEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCc-cEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 85 IHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIK-RMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 85 ~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~-~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
+.+..+. ....+.+.+.++.||..|-..-+.+.|||++ ..+|.|.|..|. ++.++.+|.+.+|+.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLd-p~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLD-PNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECC-TTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccC-ccCChhhhCCcCCceeeeee
Confidence 3445553 3455888999999999999999999999999 899999999995 99999999999999999875
No 200
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.20 E-value=0.00014 Score=64.12 Aligned_cols=141 Identities=20% Similarity=0.256 Sum_probs=107.0
Q ss_pred EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhC----CCCccEEEEE------CceecccccccccccCCCCCCEEEEE
Q 045158 85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDG----TPIKRMLLFF------SGIELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~g----ip~~~q~L~~------~g~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
+.+.|.+.+-+-++.++++.||.++...|.++.. .+.++.-|++ .|.=|+ +.++|..|++.+++.+...
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~-~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 4 LSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLE-AGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECC-TTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEecc-CCCCHHHhCCCCCceeecc
Confidence 3455555677789999999999999999988773 3678888998 344575 7789999999999998876
Q ss_pred eeeccccCCCCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCc-eEEeecC---------eeec
Q 045158 155 LKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPRED-YIFIHKQ---------RIMR 224 (252)
Q Consensus 155 ~~~~~~~~~~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~~g---------~~l~ 224 (252)
-++ +.+.|. .++|....+.|+++.|+.++-+.|+++.|+.... +-|.+.. .-|+
T Consensus 83 ~~~------------~~~~V~----l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~ 146 (371)
T 3ivf_A 83 KKQ------------RPLKIR----MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLD 146 (371)
T ss_dssp ECE------------EEEEEE----CTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCC
T ss_pred Cce------------eEEEEE----CcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHh
Confidence 532 334443 5789999999999999999999999999997644 4444321 3455
Q ss_pred CCccccccCCCCCCEEEE
Q 045158 225 DNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 225 d~~tL~~y~I~~gsti~l 242 (252)
.++++.+.++.+..++++
T Consensus 147 ~~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 147 HGRTLREQGVEEHETLLL 164 (371)
T ss_dssp TTSBTGGGTCCTTCEEEE
T ss_pred cCchhHhhCCCCCceEEE
Confidence 667888887766667655
No 201
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.17 E-value=7.9e-06 Score=55.98 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=60.3
Q ss_pred ceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCC-----ceEEeecCeeecCCccccccCCCCCCEEEE
Q 045158 170 LSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPRE-----DYIFIHKQRIMRDNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 170 ~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~-----~~~l~~~g~~l~d~~tL~~y~I~~gsti~l 242 (252)
+.+.|...-+.+.++++-++++...||..|.+.+.+..+++.. ..+..-++..|.++++|++|+|.+||.|.+
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 3444444334578999999999999999999999999877652 247777899999999999999999999986
No 202
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.15 E-value=8.6e-06 Score=54.67 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=56.3
Q ss_pred CceEEEEecCCCcHHHHHHHHhhcCCCCCC-ceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSSKILPRE-DYIFIHKQRIMRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~-~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~ 243 (252)
...+.+.|.++.+|..|-+.-+.+.|||++ ..+|.|.|.-|+++.++++|++.+||.|.++
T Consensus 19 ~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 19 SEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp SCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 456678899999999999999999999999 8999999999999999999999999999764
No 203
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.11 E-value=1.7e-05 Score=56.41 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=62.9
Q ss_pred ccceeeEEeeeeccCC-ceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158 168 RRLSFKVQTSSSLLNG-ASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 168 ~~~~i~v~~~~~~~~g-~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~ 243 (252)
..+.+.|+. -.| ..+.+.|.++++...|.+.-+++.|+++...+|.|+|..+.++.|-++.++++||+|.++
T Consensus 24 ~~I~LkV~~----~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 24 QQLQLRVQG----KEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SEEEEEEEE----SSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CeEEEEEEc----CCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 345556553 245 478899999999999999999999999999999999999999999999999999999875
No 204
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.00 E-value=0.00029 Score=65.11 Aligned_cols=204 Identities=12% Similarity=0.120 Sum_probs=135.5
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCe-------e-cC-----CCCCccccccccCCcEEEEEecCCC----
Q 045158 13 VLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGW-------E-LV-----DGLDMEDYPIVKEGTKIDLTINPFL---- 75 (252)
Q Consensus 13 ~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~-------~-L~-----d~~~L~~~~i~~~~t~i~l~~~~~~---- 75 (252)
.+.|..++|+.+||..|++..|+|+++|||..... + +- .+.++.++.-.....++.|-+..+.
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~~~~~~~~ 118 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPELAAS 118 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTSCSSEEEEEEECCHHHHTT
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhccCCceEEEEEecccccCCc
Confidence 57899999999999999999999999999975421 1 11 1112333221212233555443221
Q ss_pred --C-ccCCcCCcEEEEEE-e-C-CcEE----EEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc------eeccccccc
Q 045158 76 --Q-SSFNQHDKIHIIIK-F-P-SRKF----NIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG------IELDDEFRN 139 (252)
Q Consensus 76 --~-~~~~~~~~~~i~v~-~-~-g~~~----~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g------~~L~~d~~~ 139 (252)
+ .+......+-||+| + + .+++ .+.|+.+++|.+|-..|.++.|+|++.-..+|.- ..|.+...|
T Consensus 119 ~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t 198 (530)
T 2ylm_A 119 GATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVS 198 (530)
T ss_dssp TCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSB
T ss_pred cccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccccc
Confidence 1 11233456899999 5 2 3443 3678899999999999999999999987777642 345325789
Q ss_pred cccc--CCCCCCEEEEEeeeccccCCCCcc---------ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCC
Q 045158 140 LSEY--GIREFSEIIVFLKTMNRLRDNPPI---------RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKI 208 (252)
Q Consensus 140 L~~y--~i~~~s~i~l~~~~~~~~~~~~~~---------~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~g 208 (252)
+.+. .+.+|+.|..-.....+.....+. ..+.|.+++. +..+...+.+++....|-.++-+.+.+..|
T Consensus 199 ~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~-~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~ 277 (530)
T 2ylm_A 199 LDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDK-TIPNDPGFVVTLSNRMNYFQVAKTVAQRLN 277 (530)
T ss_dssp HHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEET-TSTTCCCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred HHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeec-CCCCCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence 9999 999999887765321000000010 1133333332 123467799999999999999999999999
Q ss_pred CCCCceEEe
Q 045158 209 LPREDYIFI 217 (252)
Q Consensus 209 ip~~~~~l~ 217 (252)
+.++..+|.
T Consensus 278 ~dP~~lRf~ 286 (530)
T 2ylm_A 278 TDPMLLQFF 286 (530)
T ss_dssp SCGGGEEEE
T ss_pred CCchhEEEE
Confidence 999888875
No 205
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.87 E-value=0.0011 Score=58.42 Aligned_cols=139 Identities=20% Similarity=0.174 Sum_probs=104.3
Q ss_pred EEeCCeEEEEEecCCCcHHHHHHHHHHHhC----CCCCceEEEE------cCeecCCCCCccccccccCCcEEEEEecCC
Q 045158 5 IVANGHEFVLEVGLQEPVLEIKRKIEQIFN----IPATSQTLAV------SGWELVDGLDMEDYPIVKEGTKIDLTINPF 74 (252)
Q Consensus 5 v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~----i~~~~q~L~~------~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~ 74 (252)
|...+.+-++..+|+.||.++-..|.++.. .++++--|+. .|.-|++.++|..|++.++.. +...
T Consensus 8 ~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~-l~~~---- 82 (371)
T 3ivf_A 8 ISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDT-MEYR---- 82 (371)
T ss_dssp EEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCE-EEEE----
T ss_pred EEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCce-eecc----
Confidence 333577788999999999999999988874 3567777887 466799999999999997765 5543
Q ss_pred CCccCCcCCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCc-cEEEEECc---------eeccccccccccc
Q 045158 75 LQSSFNQHDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIK-RMLLFFSG---------IELDDEFRNLSEY 143 (252)
Q Consensus 75 ~~~~~~~~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~-~q~L~~~g---------~~L~~d~~~L~~y 143 (252)
...+.+.|.+ +|....+.++++.|+.++-..|.++.|+... ..-|.+.. .-| +..+++.+.
T Consensus 83 -------~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL-~~~k~l~~q 154 (371)
T 3ivf_A 83 -------KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWL-DHGRTLREQ 154 (371)
T ss_dssp -------ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CC-CTTSBTGGG
T ss_pred -------CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHH-hcCchhHhh
Confidence 3356788885 6888999999999999999999999998643 35565432 134 355677777
Q ss_pred CCCCCCEEEEEee
Q 045158 144 GIREFSEIIVFLK 156 (252)
Q Consensus 144 ~i~~~s~i~l~~~ 156 (252)
+.....++.+..+
T Consensus 155 ~~~~~~~l~frvK 167 (371)
T 3ivf_A 155 GVEEHETLLLRRK 167 (371)
T ss_dssp TCCTTCEEEEEEC
T ss_pred CCCCCceEEEEEE
Confidence 7666667766543
No 206
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.87 E-value=1.5e-05 Score=59.35 Aligned_cols=67 Identities=19% Similarity=0.330 Sum_probs=55.1
Q ss_pred eccCCceEEEEecCCCcHHHHHHHHhhcCCCCCC-ceEEee--------------------------------------c
Q 045158 179 SLLNGASIPLEMQDSSTVNELRHLLLSSKILPRE-DYIFIH--------------------------------------K 219 (252)
Q Consensus 179 ~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~-~~~l~~--------------------------------------~ 219 (252)
.++.|...++.|+.+.+|.+++..|+.+.||+.. .|-|.. .
T Consensus 17 ~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~ 96 (128)
T 2kc2_A 17 RMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDE 96 (128)
T ss_dssp ECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSS
T ss_pred EcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCC
Confidence 3689999999999999999999999999999844 344432 1
Q ss_pred CeeecCCccccccCCCCCCEEEEecC
Q 045158 220 QRIMRDNCSLRWHGVEYGDILYVFKG 245 (252)
Q Consensus 220 g~~l~d~~tL~~y~I~~gsti~l~~~ 245 (252)
+.-|++++||.++||.+++|+.|-+.
T Consensus 97 ~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 97 LNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp EEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred CCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 25778899999999999999988543
No 207
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.82 E-value=9.6e-05 Score=51.31 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=68.4
Q ss_pred ceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecC
Q 045158 170 LSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR 249 (252)
Q Consensus 170 ~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~ 249 (252)
|.+.|- ..+|++.++.|.++.++.++-++.++++|+.++++.|.|+++.++-+-.++--|+-+|++++|+..+-++
T Consensus 10 m~v~Vl----~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s~ 85 (90)
T 2al3_A 10 SAVSVL----APNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRSR 85 (90)
T ss_dssp CCEEEE----CTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSCC
T ss_pred cEEEEE----cCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCCC
Confidence 555553 2578999999999999999999999999999999999999999999999999999999999999876665
Q ss_pred C
Q 045158 250 G 250 (252)
Q Consensus 250 ~ 250 (252)
.
T Consensus 86 ~ 86 (90)
T 2al3_A 86 E 86 (90)
T ss_dssp -
T ss_pred c
Confidence 4
No 208
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.80 E-value=0.00014 Score=51.55 Aligned_cols=72 Identities=14% Similarity=0.310 Sum_probs=63.1
Q ss_pred CCcEEEEEE-eCC-cEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158 82 HDKIHIIIK-FPS-RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 82 ~~~~~i~v~-~~g-~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
...+.|.|+ ..| +.+.+.+..+++...|...-+++.|++++..++.|.|..|. +..|-.++++.+|++|.+.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~-~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLS-GRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECC-SCSCHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence 345666666 356 47899999999999999999999999999999999999996 8899999999999999874
No 209
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.79 E-value=0.0001 Score=59.86 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=66.3
Q ss_pred CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
+..+.|.|+..++.+.+.+..+++...|+...+++.|+|++++++.|.|+.+. +..+-.+..+.++++|.+...
T Consensus 19 ~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~-~~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp CSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECC-TTCCTTTTTCCTTEEEEEECS
T ss_pred CCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEecc-CCCChHHhhhcccccchhhcc
Confidence 44566666656778899999999999999999999999999999999999996 889999999999999999884
No 210
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.77 E-value=0.00011 Score=50.98 Aligned_cols=74 Identities=9% Similarity=-0.008 Sum_probs=65.5
Q ss_pred CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
.+.|.+.|-. +++...+.|.++.|+.++=+...+++|+.+++..|.|+++.| |-+.++.-.|+.+|+.+.|+.+
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~l-DLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVL-DLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEE-SSSCBHHHHCCCSSCEEEEECS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEec-cccceeEecCCCCCCEEEEEEc
Confidence 3457888884 688999999999999999999999999999999999999999 5889999999999999999864
No 211
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.76 E-value=8.2e-05 Score=60.49 Aligned_cols=73 Identities=11% Similarity=0.161 Sum_probs=64.9
Q ss_pred ceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCee
Q 045158 170 LSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTV 247 (252)
Q Consensus 170 ~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~ 247 (252)
+.+.|+ ..|..+.+.|..+++...|++..+++.|+|+++++|.|+|+.+.++.|-.+.+..++|+|.++....
T Consensus 22 i~ikv~-----~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~ 94 (209)
T 3uf8_A 22 INLKVS-----DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (209)
T ss_dssp EEEEEE-----CSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCT
T ss_pred EEEEEE-----cCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccc
Confidence 555554 2577888999999999999999999999999999999999999999999999999999999875443
No 212
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.58 E-value=9.5e-06 Score=70.74 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=0.0
Q ss_pred CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158 82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
...+.|.|+..|+.+.+.+..+++...|+...+++.|++++.+++.|+|+.+. ++.|.+++++.+|++|+++..
T Consensus 19 ~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~-~~~TP~~L~MEDgD~Idv~~~ 92 (360)
T 3ix6_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHRE 92 (360)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECC-CCCChHHcCCCccchhhhhhc
Confidence 33456666656778899999999999999999999999999999999999996 889999999999999999983
No 213
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.56 E-value=0.00074 Score=47.29 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=65.3
Q ss_pred cEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 84 KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 84 ~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.+.|.|+..|..+.+.+..++....|...-+++.|++++..++.|.|..+. +..|-.+.++.++++|.+++
T Consensus 21 ~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~-~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 21 LFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELS-PTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECC-TTSCHHHHTCCSSCEEEEEE
T ss_pred eEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCC-CCCCHhHcCCCCCCEEEEEE
Confidence 367777767888999999999999999999999999999999999999996 88999999999999999886
No 214
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.55 E-value=1.1e-05 Score=70.34 Aligned_cols=72 Identities=11% Similarity=0.170 Sum_probs=0.0
Q ss_pred cceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecC
Q 045158 169 RLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKG 245 (252)
Q Consensus 169 ~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~ 245 (252)
.+.+.|+. .|+.+.+.|.++++...|++..+++.|++++.++|.|+|+.+.++.|.+++++++||+|.++..
T Consensus 21 ~I~LKV~~-----~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~ 92 (360)
T 3ix6_A 21 HINLKVSD-----GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (360)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred eEEEEEec-----CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhc
Confidence 35556542 4788889999999999999999999999999999999999999999999999999999998743
No 215
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.52 E-value=0.00045 Score=48.39 Aligned_cols=63 Identities=8% Similarity=0.102 Sum_probs=59.7
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~ 243 (252)
..|...-+.+..++.-..|.+.-+++.|++++..+|.|+|..+.++.|=++.+..+||+|..+
T Consensus 28 ~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~ 90 (95)
T 2l76_A 28 CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCV 90 (95)
T ss_dssp CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEE
T ss_pred cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEE
Confidence 358888999999999999999999999999999999999999999999999999999999876
No 216
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.43 E-value=0.00038 Score=47.58 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=54.8
Q ss_pred EEEEEEe---CCcEEEEeeCCCccHHHHHHHHHHHhCCCCc-----cEEEEECceecccccccccccCCCCCCEEEE
Q 045158 85 IHIIIKF---PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIK-----RMLLFFSGIELDDEFRNLSEYGIREFSEIIV 153 (252)
Q Consensus 85 ~~i~v~~---~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~-----~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l 153 (252)
+.|++.+ .++.+.+.++...||..|++.+.+..+++.. ..++.-.+..|. ++..|++|+|.+|+.|.+
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~-~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFS-GECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEE-TTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEc-CCCEEeeCCcCCCCEEEE
Confidence 4555554 6899999999999999999999999987642 223444667885 889999999999999875
No 217
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=97.43 E-value=0.011 Score=54.59 Aligned_cols=214 Identities=10% Similarity=0.046 Sum_probs=131.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEE----EcCee---c--CCCCCcccccccc---C-CcEEEEEecCCC
Q 045158 9 GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLA----VSGWE---L--VDGLDMEDYPIVK---E-GTKIDLTINPFL 75 (252)
Q Consensus 9 g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~----~~g~~---L--~d~~~L~~~~i~~---~-~t~i~l~~~~~~ 75 (252)
...|.++++..+|-.+|.++|++..++.|...||+ |.+.+ + ..+.+|.+.=-.. . .......+
T Consensus 252 ~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL---- 327 (530)
T 2ylm_A 252 DPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQL---- 327 (530)
T ss_dssp CCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEEC----
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEEC----
Confidence 56699999999999999999999999999987765 12321 1 1222333221100 0 11111111
Q ss_pred CccCC---cCCcEEEEEEeCC---cEEEEeeCCCccHHHHHHHHHHHhCCC---CccEEEE--ECce---eccccccccc
Q 045158 76 QSSFN---QHDKIHIIIKFPS---RKFNIDVDRTDTVRSLKEKIHIIDGTP---IKRMLLF--FSGI---ELDDEFRNLS 141 (252)
Q Consensus 76 ~~~~~---~~~~~~i~v~~~g---~~~~l~v~~~~TV~~lK~~I~~~~gip---~~~q~L~--~~g~---~L~~d~~~L~ 141 (252)
+.++. ....+.|+...++ ..+.+.+..+.||.+|-+.++.+.+++ ....+|. ++++ .+. ++.+++
T Consensus 328 ~ipl~ElE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~-~~~~i~ 406 (530)
T 2ylm_A 328 KMKITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQ-EDELLE 406 (530)
T ss_dssp SSCHHHHHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEEC-TTSBGG
T ss_pred CCCHHHHhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecC-CCcccc
Confidence 11221 3445666444222 357888889999999999999999987 4566664 6776 554 666777
Q ss_pred ccCCCCCCEEEEEeeeccccCCCCccccceeeEEeeeec---cCCceEEEEecCCCcHHHHHHHHhhcCCCCCC---ceE
Q 045158 142 EYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSL---LNGASIPLEMQDSSTVNELRHLLLSSKILPRE---DYI 215 (252)
Q Consensus 142 ~y~i~~~s~i~l~~~~~~~~~~~~~~~~~~i~v~~~~~~---~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~---~~~ 215 (252)
...-....++.+..-|.... .-+.....-|.|..+.+. ..|.-+.+.|.+.+|.+++|+.|+++.|+|.. ++.
T Consensus 407 ~i~d~~~~~~rieeip~ee~-~~~~~~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~K 485 (530)
T 2ylm_A 407 CLSPATSRTFRIEEIPLDQV-DIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFK 485 (530)
T ss_dssp GSCCCTTCEEEEEECCGGGS-SCCTTTEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCE
T ss_pred cccccccceEEEEECCHHHh-ccCCCCcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEE
Confidence 65444477787765443111 110122233344333322 24666778899999999999999999999954 444
Q ss_pred --EeecC--eeecCCcc
Q 045158 216 --FIHKQ--RIMRDNCS 228 (252)
Q Consensus 216 --l~~~g--~~l~d~~t 228 (252)
++-.+ +.++|+..
T Consensus 486 fa~v~~~~~~yl~d~d~ 502 (530)
T 2ylm_A 486 FAIVMMGRHQYINEDEY 502 (530)
T ss_dssp EEEEETTEEEECCTTTC
T ss_pred EEEEECCcccccCCccc
Confidence 34333 45666543
No 218
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.33 E-value=0.00029 Score=52.41 Aligned_cols=69 Identities=23% Similarity=0.191 Sum_probs=54.8
Q ss_pred EEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCc-------------------------------------cEEEE
Q 045158 86 HIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIK-------------------------------------RMLLF 127 (252)
Q Consensus 86 ~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~-------------------------------------~q~L~ 127 (252)
.+.|+ .+|+..++.|+.+.||.+++..|+.+.||+.. +|+|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 57888 47889999999999999999999999999844 22232
Q ss_pred E--CceecccccccccccCCCCCCEEEEEe
Q 045158 128 F--SGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 128 ~--~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
. ...-| |++++|.++||.+++++.|-.
T Consensus 93 ~dd~~~WL-D~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 93 TDDELNWL-DHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CSSSEEEE-CSSSCHHHHTCCTTSEEEEEE
T ss_pred ccCCCCcc-cCCCcHHHcCCCCCCEEEEEE
Confidence 1 11345 588999999999999987764
No 219
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.22 E-value=4.8e-05 Score=67.67 Aligned_cols=68 Identities=9% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecC
Q 045158 182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR 249 (252)
Q Consensus 182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~ 249 (252)
.|..+.+.|..+++...|++..+++.|+|+.+++|.|+|+.+.++.|-++.++++||+|.++..-..|
T Consensus 38 ~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 38 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp --------------------------------------------------------------------
T ss_pred CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 57788899999999999999999999999999999999999999999999999999999988554433
No 220
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.10 E-value=7.6e-05 Score=66.35 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=0.0
Q ss_pred cEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158 84 KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT 157 (252)
Q Consensus 84 ~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~ 157 (252)
.+.|.|+..+..+.+.+..+++...|+...+++.|+|+..+++.|+|+.+. +..|-.++++.+|++|.+..+.
T Consensus 30 ~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~-~~~Tp~~l~med~d~i~~~~~q 102 (389)
T 4da1_A 30 HINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQAPEDLDMEDNDIIEAHREQ 102 (389)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEeeeeecc
Confidence 344555445677889999999999999999999999999999999999996 8899999999999999999853
No 221
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.93 E-value=0.0059 Score=41.86 Aligned_cols=72 Identities=11% Similarity=0.129 Sum_probs=59.3
Q ss_pred CcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceecc--cccccccccCCCCCCEEEEEe
Q 045158 83 DKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELD--DEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 83 ~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--~d~~~L~~y~i~~~s~i~l~~ 155 (252)
+...|-|++ +|+.+.-.+..++||.+|..-|.. .+.+.....|+ |-.+.+. |.+.+|.+.|+.+.++|.+..
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 346788886 577888889999999999999998 67778888888 5567773 456899999999999998864
No 222
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.81 E-value=0.0073 Score=41.38 Aligned_cols=63 Identities=17% Similarity=0.179 Sum_probs=51.5
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeee---cCCccccccCCCCCCEEEEe
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIM---RDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l---~d~~tL~~y~I~~gsti~l~ 243 (252)
..+|+.+.-.-..++||.+|+..|.. .+.+...+.|. |..+.+ +.+.||.+.|+.+.++|++=
T Consensus 14 lpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 14 TPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp CTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 45788887778889999999999988 56777778777 456777 45689999999999999873
No 223
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=96.73 E-value=0.0053 Score=45.82 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=48.9
Q ss_pred CceEEEEecCCCcHHHHHHHHhhc--CCCCCC------ceEEee----cCe-eecCC-------------ccccccCCCC
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSS--KILPRE------DYIFIH----KQR-IMRDN-------------CSLRWHGVEY 236 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~--~gip~~------~~~l~~----~g~-~l~d~-------------~tL~~y~I~~ 236 (252)
...+++.|-..|||..+|++|-+. .|+|.+ ..-|.+ .|+ .|.|. +||+.|+|.+
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 467889999999999999999876 477754 455655 233 35552 4999999999
Q ss_pred CCEEEEecCe
Q 045158 237 GDILYVFKGT 246 (252)
Q Consensus 237 gsti~l~~~~ 246 (252)
|+++-|++..
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999998643
No 224
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.57 E-value=0.011 Score=42.51 Aligned_cols=62 Identities=18% Similarity=0.325 Sum_probs=44.3
Q ss_pred CceEEEEecCCCcHHHHHHHHhhc--CCCCCC------ceEEee----cCeeecC--------C-----ccccccCCCCC
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSS--KILPRE------DYIFIH----KQRIMRD--------N-----CSLRWHGVEYG 237 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~--~gip~~------~~~l~~----~g~~l~d--------~-----~tL~~y~I~~g 237 (252)
+..+++.|-..|||..+|++|-+. .|.|.+ .+.|.+ .|+.|.| + +||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 556788899999999999999765 477654 456665 2355555 1 59999999999
Q ss_pred CEEEEec
Q 045158 238 DILYVFK 244 (252)
Q Consensus 238 sti~l~~ 244 (252)
+++-|++
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9998874
No 225
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.50 E-value=0.017 Score=41.64 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=61.4
Q ss_pred CcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceecc--cccccccccCCCCCCEEEEEee
Q 045158 83 DKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELD--DEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 83 ~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
....|-|++ +|+.+.-.+..++||.+|.+-|....+.+.....|+ |-.+.+. |.+.+|.+.|+.+.++|.+...
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 457889996 688899999999999999999999888876777776 5677775 3468999999999999888763
No 226
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.16 E-value=0.016 Score=38.77 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=44.7
Q ss_pred ceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCCC
Q 045158 184 ASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGGY 252 (252)
Q Consensus 184 ~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~~ 252 (252)
....++++...||++|-+++ |+|++.....-+|+....+. +.+||+|.++ ++.+||.
T Consensus 11 ~~~~~ev~~g~Tv~dLL~~L----gl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv--~~V~G~~ 67 (74)
T 2l32_A 11 ETSEVAVDDDGTYADLVRAV----DLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL--RLIKGGL 67 (74)
T ss_dssp SEEEEECSTTCSHHHHHHTT----CCCSSCCCEECCCCCCCTTS------SSCCCCEEEC--SSCSCC-
T ss_pred cceeEEcCCCCcHHHHHHHc----CCCcceEEEEECCEECCHHH------CCCCCEEEEE--Eeecccc
Confidence 34458899889999887665 99999888888998777666 4459999998 7777773
No 227
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.12 E-value=0.066 Score=35.15 Aligned_cols=66 Identities=26% Similarity=0.344 Sum_probs=47.6
Q ss_pred ceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecC
Q 045158 170 LSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR 249 (252)
Q Consensus 170 ~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~ 249 (252)
|++.|.. ......+++....||.+|.+.+ +++.....+..+|.....+. -+++||.|.++ +..+
T Consensus 5 m~i~vNg-----~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii--~~V~ 68 (70)
T 1ryj_A 5 MKFTVIT-----DDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVI--RVIY 68 (70)
T ss_dssp EEEEEEE-----TTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEE--ECTT
T ss_pred EEEEEeC-----ccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEE--eccc
Confidence 5666542 1223456777778999999987 56777778888998877654 68999999998 4455
Q ss_pred CC
Q 045158 250 GG 251 (252)
Q Consensus 250 ~~ 251 (252)
||
T Consensus 69 GG 70 (70)
T 1ryj_A 69 GG 70 (70)
T ss_dssp CC
T ss_pred cC
Confidence 55
No 228
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.10 E-value=0.042 Score=39.51 Aligned_cols=63 Identities=25% Similarity=0.308 Sum_probs=44.1
Q ss_pred CcEEEEeeCCCccHHHHHHHHHHHh--CCCCc------cEEEEE----Cceeccccc------------ccccccCCCCC
Q 045158 93 SRKFNIDVDRTDTVRSLKEKIHIID--GTPIK------RMLLFF----SGIELDDEF------------RNLSEYGIREF 148 (252)
Q Consensus 93 g~~~~l~v~~~~TV~~lK~~I~~~~--gip~~------~q~L~~----~g~~L~~d~------------~~L~~y~i~~~ 148 (252)
+..+++.|-.-|||.++|++|-+.. |.|.+ ...|-| .|+.|.|.+ +||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4558888888999999999998765 66644 556776 345565211 58999999999
Q ss_pred CEEEEEe
Q 045158 149 SEIIVFL 155 (252)
Q Consensus 149 s~i~l~~ 155 (252)
+++.|+-
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9998753
No 229
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.92 E-value=0.034 Score=40.02 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=53.6
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeeec---CCccccccCCCCCCEEEEec
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIMR---DNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l~---d~~tL~~y~I~~gsti~l~~ 244 (252)
..+|.++.-.-..++|+.+|++.|....+.+...+.|. |..+++. .+.||.+.|+.+..+|++-.
T Consensus 20 lpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 20 LPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 46788888888999999999999988877776777666 4567776 36899999999999988764
No 230
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.91 E-value=0.028 Score=41.51 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=60.4
Q ss_pred CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceec--ccccccccccCCCCCCEEEEEe
Q 045158 82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIEL--DDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L--~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.....|-|++ +|..+.-.+..++||.+|..-|... +.+.....|+ |-.+.| .|.+.+|.+.|+.+.++|.+.-
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 4567899996 5888888999999999999999887 7777778887 567888 4457899999999988888754
No 231
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=95.59 E-value=0.1 Score=42.21 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=51.5
Q ss_pred EEEEeeCCCccHHHHHHHHHHHhCCCCc-cEEEEE---Cc--eecccccccccccCCCCCCEEEEEee
Q 045158 95 KFNIDVDRTDTVRSLKEKIHIIDGTPIK-RMLLFF---SG--IELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 95 ~~~l~v~~~~TV~~lK~~I~~~~gip~~-~q~L~~---~g--~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
.+++.++..+||.+|+..+.+.+++|.+ ..||.. .+ ..|.+++.+|.++++.++..|.+.++
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r 208 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQK 208 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEEC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEe
Confidence 3678889999999999999999999987 577763 22 35654467999999999999999983
No 232
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=95.54 E-value=0.046 Score=37.70 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=46.2
Q ss_pred ccccceeeEEeeeeccCCceEEEEecCC-CcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158 166 PIRRLSFKVQTSSSLLNGASIPLEMQDS-STVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 166 ~~~~~~i~v~~~~~~~~g~~~~l~v~~~-~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
....|+|.| +|+.+. +... .||.+|.+.+ +++.....+..+|+.... ....++-+++||.|.+++
T Consensus 17 ~~~~M~I~v-------NGe~~e--l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 17 IGGRHMLQL-------NGKDVK--WKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp -----CEEE-------TTEEEC--CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEE
T ss_pred CCcceEEEE-------CCEEEE--CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEc
Confidence 344466665 476544 4565 7999999887 577777778888876543 355567899999999984
Q ss_pred CeecCCC
Q 045158 245 GTVSRGG 251 (252)
Q Consensus 245 ~~~~~~~ 251 (252)
..+||
T Consensus 83 --~V~GG 87 (87)
T 1tyg_B 83 --FVGGG 87 (87)
T ss_dssp --ECCC-
T ss_pred --ccccC
Confidence 55555
No 233
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.35 E-value=0.085 Score=38.75 Aligned_cols=63 Identities=24% Similarity=0.306 Sum_probs=47.5
Q ss_pred CCceEEEEecCCCcHHHHHHHHhhc--CCCCC------CceEEee----cCe-eecC---------C----ccccccCCC
Q 045158 182 NGASIPLEMQDSSTVNELRHLLLSS--KILPR------EDYIFIH----KQR-IMRD---------N----CSLRWHGVE 235 (252)
Q Consensus 182 ~g~~~~l~v~~~~tV~~Lk~~i~~~--~gip~------~~~~l~~----~g~-~l~d---------~----~tL~~y~I~ 235 (252)
.+..+++.|-..|||..+|++|-+. .|.|. +.+.|.+ .|+ .|.| + +||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 3556888899999999999999765 47765 4566766 223 2444 2 599999999
Q ss_pred CCCEEEEec
Q 045158 236 YGDILYVFK 244 (252)
Q Consensus 236 ~gsti~l~~ 244 (252)
+|+++-|++
T Consensus 95 dgatv~l~~ 103 (127)
T 3h6n_A 95 EGASLAMSL 103 (127)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 999999874
No 234
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=95.33 E-value=0.11 Score=42.57 Aligned_cols=62 Identities=10% Similarity=0.179 Sum_probs=52.1
Q ss_pred EEEEeeCCCccHHHHHHHHHHHhCCCCc-cEEEEE-C----ceecccccccccccCCCCCCEEEEEee
Q 045158 95 KFNIDVDRTDTVRSLKEKIHIIDGTPIK-RMLLFF-S----GIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 95 ~~~l~v~~~~TV~~lK~~I~~~~gip~~-~q~L~~-~----g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
.+++.++..+||.+|+..+.+.+++|.+ ..||.. . ...|.+++.+|.++++.++..|.+.++
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r 220 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQ 220 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence 3667789999999999999999999997 588875 2 236654568999999999999999983
No 235
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=95.25 E-value=0.1 Score=37.91 Aligned_cols=63 Identities=19% Similarity=0.396 Sum_probs=47.1
Q ss_pred CceEEEEecCCCcHHHHHHHHhhc--CCCCCC------ceEEee-cC---e-eecC---------C----ccccccCCCC
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSS--KILPRE------DYIFIH-KQ---R-IMRD---------N----CSLRWHGVEY 236 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~--~gip~~------~~~l~~-~g---~-~l~d---------~----~tL~~y~I~~ 236 (252)
...+++.|-..|||..+|++|-+. .|.|.+ .+.|.+ .| + .|.| + +||+.|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 456788899999999999999765 477754 456665 22 2 3444 2 5999999999
Q ss_pred CCEEEEecC
Q 045158 237 GDILYVFKG 245 (252)
Q Consensus 237 gsti~l~~~ 245 (252)
|+++-|++.
T Consensus 106 gatl~l~~~ 114 (117)
T 4e74_A 106 GSVVALVSK 114 (117)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999999864
No 236
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.11 E-value=0.06 Score=39.87 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=55.9
Q ss_pred CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHh-CCCCccEEEE--ECceecccccccccccCCCCCCEE
Q 045158 82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIID-GTPIKRMLLF--FSGIELDDEFRNLSEYGIREFSEI 151 (252)
Q Consensus 82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~-gip~~~q~L~--~~g~~L~~d~~~L~~y~i~~~s~i 151 (252)
.....|-|++ +|..+.-.+..++||.+|.+-|.... +.+.....|+ |-.+.+.+++.+|.+.|+.+.+++
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 3457899996 68888999999999999999999863 4555667776 567888756799999999985544
No 237
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.10 E-value=0.093 Score=37.68 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=58.7
Q ss_pred CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceecc-cccccccccCCCCCCEEEEEe
Q 045158 82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELD-DEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~-~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.....|-|++ +|+.+.-.+..++||.+|..-|... +.......|+ |-.+.|. +.+.+|.+.|+.+.++|.+..
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 3467899996 6888888899999999999999965 5555667776 5677775 467899999999999998765
No 238
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.96 E-value=0.25 Score=36.27 Aligned_cols=63 Identities=25% Similarity=0.242 Sum_probs=47.5
Q ss_pred CcEEEEeeCCCccHHHHHHHHHHHh--CCCC------ccEEEEE----Cce-eccccc------------ccccccCCCC
Q 045158 93 SRKFNIDVDRTDTVRSLKEKIHIID--GTPI------KRMLLFF----SGI-ELDDEF------------RNLSEYGIRE 147 (252)
Q Consensus 93 g~~~~l~v~~~~TV~~lK~~I~~~~--gip~------~~q~L~~----~g~-~L~~d~------------~~L~~y~i~~ 147 (252)
+..+++.|-.-|||.++|++|-+.. ++|. +...|-| .|. .|.|.+ +||+.|+|.+
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~d 95 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPE 95 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCT
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCC
Confidence 4558888888999999999998765 6654 5667777 233 354211 5999999999
Q ss_pred CCEEEEEe
Q 045158 148 FSEIIVFL 155 (252)
Q Consensus 148 ~s~i~l~~ 155 (252)
|+++.|..
T Consensus 96 gatv~l~~ 103 (127)
T 3h6n_A 96 GASLAMSL 103 (127)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEE
Confidence 99999875
No 239
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=94.93 E-value=0.099 Score=38.49 Aligned_cols=64 Identities=14% Similarity=0.235 Sum_probs=52.6
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeee--c-CCccccccCCCCCCEEEEec
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIM--R-DNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l--~-d~~tL~~y~I~~gsti~l~~ 244 (252)
...|.++.-.-..++||.+|+.-|... +.+...+.|. |-.+.+ + .+.||.+.|+.+..+|++-.
T Consensus 50 lPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 50 YPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp CTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 467888888888999999999999876 7777778776 567888 3 47899999999988888754
No 240
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=94.81 E-value=0.052 Score=36.09 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=46.1
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
++|+...+ ...||++|-+.+ ++++.......+|..+. ....+++-+++||.|.++ +..+||
T Consensus 5 vNG~~~e~---~~~Tl~~LL~~l----~~~~~~vAV~vNg~iVp-r~~~~~~~L~dGD~veIv--~~VgGG 65 (73)
T 2kl0_A 5 INGEQREV---QSASVAALMTEL----DCTGGHFAVALNYDVVP-RGKWDETPVTAGDEIEIL--TPRQGG 65 (73)
T ss_dssp ETTEEECC---CCSBHHHHHHHT----TCCSSSCEEEESSSEEC-HHHHTTCBCCTTCEEEEE--CCCCCC
T ss_pred ECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECC-hHHcCcccCCCCCEEEEE--ccccCC
Confidence 35776554 457999987765 78888888888886654 345667889999999998 666666
No 241
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=94.60 E-value=0.14 Score=34.59 Aligned_cols=59 Identities=15% Similarity=0.299 Sum_probs=51.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158 11 EFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT 70 (252)
Q Consensus 11 ~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~ 70 (252)
.+.-.++-.+++..||+.++.+.|++-+.-.+...+..|+++.+|.+.+++-++. +.+.
T Consensus 4 vi~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGl-VQin 62 (89)
T 2juo_A 4 CVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGT-VQLS 62 (89)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSE-EEEE
T ss_pred hhhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccE-EEEE
Confidence 3455677889999999999999999999999999999999999999999997776 5543
No 242
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.43 E-value=0.084 Score=35.83 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=50.4
Q ss_pred CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeec---CeeecCCccccccCCCCCCEEEEe
Q 045158 182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHK---QRIMRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~---g~~l~d~~tL~~y~I~~gsti~l~ 243 (252)
..+..-+.|.+..+..+|--.|+++..+.++.+.|... +..|+=+.+|.||||++ +|..
T Consensus 19 ~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~ 80 (91)
T 2daj_A 19 KTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAM 80 (91)
T ss_dssp TTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEE
T ss_pred CcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hhee
Confidence 35566689999999999999999999999999988763 47888999999999987 5554
No 243
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=94.42 E-value=0.23 Score=36.36 Aligned_cols=61 Identities=15% Similarity=0.273 Sum_probs=44.7
Q ss_pred ceEEEEecCCCcHHHHHHHHhhc----CCCCCC----ceEEeec-C---ee----------ecCC----ccccccCCCCC
Q 045158 184 ASIPLEMQDSSTVNELRHLLLSS----KILPRE----DYIFIHK-Q---RI----------MRDN----CSLRWHGVEYG 237 (252)
Q Consensus 184 ~~~~l~v~~~~tV~~Lk~~i~~~----~gip~~----~~~l~~~-g---~~----------l~d~----~tL~~y~I~~g 237 (252)
..+++.|-..|||..+|++|-+. .|.|.+ .+-|.++ | +. ++++ +||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 56788899999999999999664 377754 3455541 1 12 2332 58999999999
Q ss_pred CEEEEec
Q 045158 238 DILYVFK 244 (252)
Q Consensus 238 sti~l~~ 244 (252)
+++-+++
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9999875
No 244
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.38 E-value=0.25 Score=36.79 Aligned_cols=62 Identities=19% Similarity=0.268 Sum_probs=47.3
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHh--CCCC------ccEEEEE----Cce-eccccc-------------ccccccCCCC
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIID--GTPI------KRMLLFF----SGI-ELDDEF-------------RNLSEYGIRE 147 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~--gip~------~~q~L~~----~g~-~L~~d~-------------~~L~~y~i~~ 147 (252)
..+++.|-.-|||.++|++|-+.. |+|. +..-|-| .|+ .|. |. .||+.|+|.+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~-D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILS-DEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEEC-SSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEee-ccCCcccccCCceeecchhccCCCC
Confidence 458888989999999999998865 6764 3455666 333 364 32 4999999999
Q ss_pred CCEEEEEee
Q 045158 148 FSEIIVFLK 156 (252)
Q Consensus 148 ~s~i~l~~~ 156 (252)
|+++.|+-+
T Consensus 120 ga~l~l~~~ 128 (138)
T 2r2o_A 120 GATVALVPC 128 (138)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEC
Confidence 999998764
No 245
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.29 E-value=0.1 Score=35.42 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=51.6
Q ss_pred EEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEE---cCeecCCCCCccccccc
Q 045158 2 RIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAV---SGWELVDGLDMEDYPIV 61 (252)
Q Consensus 2 ~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~---~g~~L~d~~~L~~~~i~ 61 (252)
++.|.+ ..+...+.|+|..++.++--.|+++..+.|+.-.|.- .+.+|+-+++|.+|||.
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgir 75 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLR 75 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCS
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhh
Confidence 455666 5566678999999999999999999999999888874 46789999999999998
No 246
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=94.29 E-value=0.092 Score=35.51 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=48.9
Q ss_pred EEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEE
Q 045158 187 PLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 187 ~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l 242 (252)
.-.++-..+...||..++.+.|++.+.+-|...+..|+++.+|-+.+|+-.-.+.+
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQi 61 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQL 61 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEE
Confidence 34466778899999999999999999999988888899999999999987776665
No 247
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=94.18 E-value=0.11 Score=35.34 Aligned_cols=45 Identities=7% Similarity=0.115 Sum_probs=39.2
Q ss_pred EEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCe
Q 045158 2 RIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGW 47 (252)
Q Consensus 2 ~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~ 47 (252)
+|.|.+. -++.|.|.++.+..+|..+|.++..+|++.-.|.|...
T Consensus 7 ~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 7 TLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 4555556 78999999999999999999999999998889988754
No 248
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=94.15 E-value=0.079 Score=35.66 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=46.5
Q ss_pred cCCceEEEEec--CCCcHHHHHHHHhhcCCCC-CCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 181 LNGASIPLEMQ--DSSTVNELRHLLLSSKILP-REDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 181 ~~g~~~~l~v~--~~~tV~~Lk~~i~~~~gip-~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
++|+... +. ...||.+|-+.+ |++ +....+..+|..+. .....++-+++||.|.++ +..+||
T Consensus 5 vNGe~~e--~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVp-r~~~~~~~L~dGD~IEIv--~~VgGG 69 (78)
T 2k5p_A 5 VNGKPST--VDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLE-REAFDATTVKDGDAVEFL--YFMGGG 69 (78)
T ss_dssp ETTEEEE--CSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECC-TTHHHHCEECSSBCEEEC--CCCCCS
T ss_pred ECCEEEE--cCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECC-hHHcCcccCCCCCEEEEE--eeecCC
Confidence 3576554 44 567999998877 677 77778888987654 456677889999999998 666666
No 249
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=93.94 E-value=0.17 Score=32.42 Aligned_cols=61 Identities=20% Similarity=0.313 Sum_probs=43.6
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
.+|+.+.+ ...||.+|.+.+ +++.....+..+|+.... ....++-+++||.|.+++ ..+||
T Consensus 4 vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~dgD~v~i~~--~V~GG 64 (64)
T 2cu3_A 4 LNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG-LEVPDRPLRDGDVVEVVA--LMQGG 64 (64)
T ss_dssp ETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG-GGCCCCCCCTTCEEEEEE--CCCC-
T ss_pred ECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCc-cccCCcCCCCCCEEEEEe--ecccC
Confidence 45776655 457999999988 566777777788866543 345567899999999984 44444
No 250
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=93.53 E-value=0.94 Score=29.41 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=46.7
Q ss_pred cEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 84 KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 84 ~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.|+|.|+-......+++....||.+|.+.+ ++++....+..||.... .+. -+++|+.|.++-
T Consensus 4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~-~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 4 GMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVI-DEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp CEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECC-TTS-----BCCTTCEEEEEE
T ss_pred eEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECC-Ccc-----cCCCCCEEEEEe
Confidence 488888855445566777778999998875 67777777888999885 322 688999998864
No 251
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.51 E-value=0.24 Score=33.63 Aligned_cols=46 Identities=2% Similarity=0.035 Sum_probs=40.5
Q ss_pred cEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc
Q 045158 84 KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG 130 (252)
Q Consensus 84 ~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g 130 (252)
.+.|.|++. -++.+.|.+..+..+|..+|.++.++|++.-.|.|..
T Consensus 5 ~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 5 AYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp CEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred cEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 366777766 7899999999999999999999999999998899865
No 252
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.26 E-value=0.56 Score=38.20 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=49.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCCCCC-ceEEEE-c----CeecCCC-CCccccccccCCcEEEEEec
Q 045158 11 EFVLEVGLQEPVLEIKRKIEQIFNIPAT-SQTLAV-S----GWELVDG-LDMEDYPIVKEGTKIDLTIN 72 (252)
Q Consensus 11 ~~~l~v~~~~tV~~lK~~I~~~~~i~~~-~q~L~~-~----g~~L~d~-~~L~~~~i~~~~t~i~l~~~ 72 (252)
.+++.++..+||.+|+.++.+.++++++ .-||.. . ...|.|. .+|.++++..+.. |.+-++
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~-illE~r 220 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQV-LVIEPQ 220 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEE-EEEEEC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCE-EEEEEe
Confidence 3567789999999999999999999997 588874 3 3467765 6999999996655 777666
No 253
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.17 E-value=0.37 Score=34.92 Aligned_cols=63 Identities=27% Similarity=0.334 Sum_probs=46.3
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHh--CCCCc------cEEEEE-Cc---e-ecccc-c-----------ccccccCCCCC
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIID--GTPIK------RMLLFF-SG---I-ELDDE-F-----------RNLSEYGIREF 148 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~--gip~~------~q~L~~-~g---~-~L~~d-~-----------~~L~~y~i~~~ 148 (252)
..+++.|-.-|||..+|++|-+.. |.|.+ ...|-| .| . .|.|. . +||+.|+|.+|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 347788888999999999998764 66644 556776 23 2 35421 1 58999999999
Q ss_pred CEEEEEee
Q 045158 149 SEIIVFLK 156 (252)
Q Consensus 149 s~i~l~~~ 156 (252)
+++.|+-+
T Consensus 107 atl~l~~~ 114 (117)
T 4e74_A 107 SVVALVSK 114 (117)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99998753
No 254
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.02 E-value=0.37 Score=34.43 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=49.8
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeeec--CCccccccCCCCCCEEEEe
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIMR--DNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l~--d~~tL~~y~I~~gsti~l~ 243 (252)
..+|+++.-.-..++||.+|...|... +.....+.|. |-.+.+. .+.||.+.|+.+..+|++-
T Consensus 30 lpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 30 CPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp CTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 567888887788899999999999865 4455567665 4566775 4689999999999999875
No 255
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=92.67 E-value=0.77 Score=30.11 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=38.4
Q ss_pred EEEecCCCcHHHHHHHHhhcCCCCC--CceEEeecCeeecCCccccccCCCCCCEEEEecCeecC
Q 045158 187 PLEMQDSSTVNELRHLLLSSKILPR--EDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR 249 (252)
Q Consensus 187 ~l~v~~~~tV~~Lk~~i~~~~gip~--~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~ 249 (252)
.+++ ...||.+|.+.+..+.++.. ....+.-||+...+ .++-+++||+|.+++ .++|
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~P-pvsG 73 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLP-PVCG 73 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEEC-CBCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEEC-CCCC
Confidence 3556 45799999999987654432 34555567755332 466799999999874 3443
No 256
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.60 E-value=0.28 Score=39.63 Aligned_cols=57 Identities=11% Similarity=0.272 Sum_probs=46.0
Q ss_pred EEEEecCCCcHHHHHHHHhhcCCCCCC-ceEEee---cC--eeecC-CccccccCCCCCCEEEE
Q 045158 186 IPLEMQDSSTVNELRHLLLSSKILPRE-DYIFIH---KQ--RIMRD-NCSLRWHGVEYGDILYV 242 (252)
Q Consensus 186 ~~l~v~~~~tV~~Lk~~i~~~~gip~~-~~~l~~---~g--~~l~d-~~tL~~y~I~~gsti~l 242 (252)
.+..+...+|+.+|++.+++..++|.+ +.||-. .+ ..|+| +.||.++++.++..|.|
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~ill 205 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVI 205 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEE
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEE
Confidence 346678899999999999999999997 566653 22 56666 57999999999999876
No 257
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=92.19 E-value=0.87 Score=31.64 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=47.0
Q ss_pred ceeeEEeeee--c-cCCceEEEEecCCCcHHHHHHHHhhcC-CC----------CCCceEEeecCeeecCCccccccCCC
Q 045158 170 LSFKVQTSSS--L-LNGASIPLEMQDSSTVNELRHLLLSSK-IL----------PREDYIFIHKQRIMRDNCSLRWHGVE 235 (252)
Q Consensus 170 ~~i~v~~~~~--~-~~g~~~~l~v~~~~tV~~Lk~~i~~~~-gi----------p~~~~~l~~~g~~l~d~~tL~~y~I~ 235 (252)
|.|.|+.|.. . .+.....+++....||.+|.+.+.... ++ ......+.-||+... .++-++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~-----~~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS-----WDEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC-----TTCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC-----CCCCCC
Confidence 5666655542 1 123466788877789999999997764 11 123345666775554 267899
Q ss_pred CCCEEEEecCeecC
Q 045158 236 YGDILYVFKGTVSR 249 (252)
Q Consensus 236 ~gsti~l~~~~~~~ 249 (252)
+||+|.+++ .++|
T Consensus 85 dGDeV~i~p-pv~G 97 (98)
T 1vjk_A 85 DGDVVGVFP-PVSG 97 (98)
T ss_dssp TTCEEEEES-CC--
T ss_pred CCCEEEEEC-CCCC
Confidence 999999985 3444
No 258
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=92.03 E-value=0.43 Score=35.14 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=50.1
Q ss_pred EEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHh-CCCCCceEEE--EcCeecCCC-CCccccccccCCc
Q 045158 2 RIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIF-NIPATSQTLA--VSGWELVDG-LDMEDYPIVKEGT 65 (252)
Q Consensus 2 ~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~-~i~~~~q~L~--~~g~~L~d~-~~L~~~~i~~~~t 65 (252)
+|.|++ +|..+.-..+.++||.+|...|.... +.+.....|+ |-.+.|+|. .||.+.|+.+ +.
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~p-sa 121 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLN-AV 121 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSS-CE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcC-ce
Confidence 466777 89999999999999999999999864 3555667777 557888764 6999999984 44
No 259
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=91.86 E-value=1 Score=32.94 Aligned_cols=61 Identities=33% Similarity=0.413 Sum_probs=43.0
Q ss_pred cEEEEeeCCCccHHHHHHHHHHH----hCCCCc----cEEEEE----Cceeccc---------cc----ccccccCCCCC
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHII----DGTPIK----RMLLFF----SGIELDD---------EF----RNLSEYGIREF 148 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~----~gip~~----~q~L~~----~g~~L~~---------d~----~~L~~y~i~~~ 148 (252)
..+++.|-.-|||.++|++|-+. .|.|.+ ...|-| .+..|.| +. .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 45788888899999999999764 377643 455655 1223331 11 47899999999
Q ss_pred CEEEEE
Q 045158 149 SEIIVF 154 (252)
Q Consensus 149 s~i~l~ 154 (252)
+++.|+
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999875
No 260
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=91.86 E-value=0.33 Score=31.21 Aligned_cols=62 Identities=26% Similarity=0.313 Sum_probs=43.6
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG 251 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~ 251 (252)
.+|+.+. +....||.+|.+.+ +++.....+..+|+.... ....++-+++||.|.+++ ..+||
T Consensus 5 vNg~~~~--~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~~gD~v~i~~--~V~GG 66 (66)
T 1f0z_A 5 FNDQAMQ--CAAGQTVHELLEQL----DQRQAGAALAINQQIVPR-EQWAQHIVQDGDQILLFQ--VIAGG 66 (66)
T ss_dssp ESSCEEC--CCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH-HHHTTCCCCTTEEECEEE--SCCCC
T ss_pred ECCEEEE--cCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc-hhcCCcCCCCCCEEEEEe--ecccC
Confidence 3576554 45667999999988 566777777788866542 334467799999999984 44444
No 261
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=91.22 E-value=0.59 Score=30.91 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=43.8
Q ss_pred EEEEEEeCC-cEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158 85 IHIIIKFPS-RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 85 ~~i~v~~~g-~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
|+|.|++.| ....+++....||++|-+ ..|+|+..-....||+....|. +.+|+.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~-------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ-------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS-------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH-------CCCCCEEEEE
Confidence 678888534 446688999999998764 4899999887778998885332 3458888775
No 262
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=90.74 E-value=0.29 Score=36.31 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=31.4
Q ss_pred EEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC
Q 045158 12 FVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG 46 (252)
Q Consensus 12 ~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g 46 (252)
.++.|..++|+.+||..|++.+|+|+++|||...-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~ 92 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQ 92 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEee
Confidence 35788899999999999999999999999998653
No 263
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=90.71 E-value=0.89 Score=31.25 Aligned_cols=47 Identities=6% Similarity=0.040 Sum_probs=38.5
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCc-eEEEEcCe
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATS-QTLAVSGW 47 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~-q~L~~~g~ 47 (252)
|+|.+.+.|....+.++++.+..+|..++.+.++++..+ ..+.|...
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 345556689999999999999999999999999998655 56667654
No 264
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=89.98 E-value=1.1 Score=30.60 Aligned_cols=63 Identities=8% Similarity=0.052 Sum_probs=43.7
Q ss_pred CcEEEEEEeCCcEEEEeeCCC-ccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 83 DKIHIIIKFPSRKFNIDVDRT-DTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 83 ~~~~i~v~~~g~~~~l~v~~~-~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
..|.|.|+ |+.+ ++... .||.+|.+.+ ++++....+..||..+. .....+.-+++|+.|.++-
T Consensus 19 ~~M~I~vN--Ge~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~--~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 19 GRHMLQLN--GKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIG--KERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ---CEEET--TEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEEC--GGGTTTSBCCSSSEEEEEE
T ss_pred cceEEEEC--CEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECC--hhhcCCcCCCCCCEEEEEc
Confidence 34555554 6644 45565 7999998875 67777777888999884 3456677899999998874
No 265
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=89.71 E-value=2.2 Score=29.23 Aligned_cols=49 Identities=2% Similarity=0.040 Sum_probs=40.4
Q ss_pred CcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCcc-EEEEECce
Q 045158 83 DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKR-MLLFFSGI 131 (252)
Q Consensus 83 ~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~-q~L~~~g~ 131 (252)
+.|.|.+.+.|..+.+.++++.+..+|.+++++..+++..+ ..+.|...
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp SCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 34666666788999999999999999999999999987654 67778654
No 266
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=89.69 E-value=1.2 Score=29.55 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=39.7
Q ss_pred eEEEEecCCCcHHHHHHHHhhcCC-----CCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCC
Q 045158 185 SIPLEMQDSSTVNELRHLLLSSKI-----LPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG 250 (252)
Q Consensus 185 ~~~l~v~~~~tV~~Lk~~i~~~~g-----ip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~ 250 (252)
...++ ....||.+|.+.+..... ++.....+..+|+... .++-+++||+|.+++ .++||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-----~~~~l~~gD~V~i~P-pv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFP-PVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-----TTCBCCTTCEEEEEC-CCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-----CCCCCCCCCEEEEeC-CCCCC
Confidence 44454 456799999999986642 3333456777886654 366889999999985 34443
No 267
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=89.38 E-value=0.19 Score=33.55 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=36.6
Q ss_pred EEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158 188 LEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 188 l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
+++....||.+|.+.+ ++|.+...+..+|+....+ +-+++||+|.+++
T Consensus 25 ~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p 72 (77)
T 1rws_A 25 IEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred EECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence 3455667999998876 4677767777888777654 6899999999873
No 268
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=89.24 E-value=0.46 Score=35.19 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=30.1
Q ss_pred EEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE
Q 045158 96 FNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF 128 (252)
Q Consensus 96 ~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~ 128 (252)
.++.|..++|+.+|+..|++..|+|+++|+|..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 457889999999999999999999999999874
No 269
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=89.00 E-value=4.2 Score=28.04 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=46.3
Q ss_pred cCCcEEEEEEe-C------C-cEEEEeeCCCccHHHHHHHHHHHhC-C----------CCccEEEEECceeccccccccc
Q 045158 81 QHDKIHIIIKF-P------S-RKFNIDVDRTDTVRSLKEKIHIIDG-T----------PIKRMLLFFSGIELDDEFRNLS 141 (252)
Q Consensus 81 ~~~~~~i~v~~-~------g-~~~~l~v~~~~TV~~lK~~I~~~~g-i----------p~~~q~L~~~g~~L~~d~~~L~ 141 (252)
.++.|.|.|++ . | ....+++....||.+|.+.+..... + ......+..||+... .
T Consensus 6 ~~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~-~----- 79 (98)
T 1vjk_A 6 HHGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS-W----- 79 (98)
T ss_dssp ---CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC-T-----
T ss_pred ccCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC-C-----
Confidence 35678999994 2 3 4577888778899999999987641 1 113345667877663 2
Q ss_pred ccCCCCCCEEEEE
Q 045158 142 EYGIREFSEIIVF 154 (252)
Q Consensus 142 ~y~i~~~s~i~l~ 154 (252)
++-+++|+.|.++
T Consensus 80 ~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 80 DEELKDGDVVGVF 92 (98)
T ss_dssp TCBCCTTCEEEEE
T ss_pred CCCCCCCCEEEEE
Confidence 6678999998875
No 270
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=88.87 E-value=0.83 Score=30.00 Aligned_cols=55 Identities=11% Similarity=0.136 Sum_probs=38.6
Q ss_pred ceEEEEecCCCcHHHHHHHHhhcCCCCCCce--EEeecCeeecCCccccccCCCCCCEEEEec
Q 045158 184 ASIPLEMQDSSTVNELRHLLLSSKILPREDY--IFIHKQRIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 184 ~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~--~l~~~g~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
....+++....||.+|.+.+..... ..... .+..+|+.... +.-+++||+|.+++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-----SDFIQPNDTVALIP 72 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-----TSEECTTCEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC-----CCCcCCCCEEEEEC
Confidence 3455666667799999999976641 01223 67778877654 36789999999985
No 271
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=88.68 E-value=2.8 Score=29.09 Aligned_cols=66 Identities=26% Similarity=0.300 Sum_probs=37.4
Q ss_pred ceEEEEec--CCCcHHHHHHHHhhcCCCCCCce-EEeecC------eeecCCc---cc--cccCCCCCCEEEEecCeecC
Q 045158 184 ASIPLEMQ--DSSTVNELRHLLLSSKILPREDY-IFIHKQ------RIMRDNC---SL--RWHGVEYGDILYVFKGTVSR 249 (252)
Q Consensus 184 ~~~~l~v~--~~~tV~~Lk~~i~~~~gip~~~~-~l~~~g------~~l~d~~---tL--~~y~I~~gsti~l~~~~~~~ 249 (252)
+...+++. ...||.+|.+.+.++..-..... .|.-+| ..+=|+. -+ .++-+++||+|-+++ .++|
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~P-pv~G 98 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS-TLHG 98 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE-CTTC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEEC-CCCC
Confidence 44556665 56799999999987762111111 011111 1222222 22 467899999998875 4555
Q ss_pred C
Q 045158 250 G 250 (252)
Q Consensus 250 ~ 250 (252)
|
T Consensus 99 G 99 (99)
T 2qjl_A 99 G 99 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 272
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=88.58 E-value=1.1 Score=30.44 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=34.2
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEE
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLA 43 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~ 43 (252)
|+|.|-+.+-.|.+.|+++-+..+|+.+|..+..+. .+.++
T Consensus 13 ~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~ 53 (85)
T 1ip9_A 13 TKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQ 53 (85)
T ss_dssp EEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEE
T ss_pred eEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEE
Confidence 466666688999999999999999999999999884 44444
No 273
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=88.29 E-value=2.6 Score=28.47 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=42.0
Q ss_pred ceEEEEecCCCcHHHHHHHHhhcCC-CC----------CCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCC
Q 045158 184 ASIPLEMQDSSTVNELRHLLLSSKI-LP----------REDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG 250 (252)
Q Consensus 184 ~~~~l~v~~~~tV~~Lk~~i~~~~g-ip----------~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~ 250 (252)
....+++....||++|.+.+..+.. +. .....+.-||+.... ++-+++||+|.+++ .++||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~P-pv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFP-PVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEEC-CCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEEC-CCCCC
Confidence 5667888777899999999987652 10 112456667766543 66799999999874 44443
No 274
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=88.04 E-value=0.92 Score=42.01 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=47.2
Q ss_pred CceEEEEecCCCcHHHHHHHHhhc--CCCCCC------ceEEee----cCe-eecCC-------------ccccccCCCC
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSS--KILPRE------DYIFIH----KQR-IMRDN-------------CSLRWHGVEY 236 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~--~gip~~------~~~l~~----~g~-~l~d~-------------~tL~~y~I~~ 236 (252)
...+++.|-..|||..+|++|-+. .|.|.+ .+-|.+ .|+ .|.|. +||++|+|.+
T Consensus 273 ~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 352 (644)
T 3hm6_X 273 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 352 (644)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCC
Confidence 356778899999999999999764 477754 456665 232 34441 5999999999
Q ss_pred CCEEEEecCe
Q 045158 237 GDILYVFKGT 246 (252)
Q Consensus 237 gsti~l~~~~ 246 (252)
|+++-|++..
T Consensus 353 ga~v~L~p~~ 362 (644)
T 3hm6_X 353 GATVALVPCL 362 (644)
T ss_dssp TCEEEEEEC-
T ss_pred CcEEEEEecc
Confidence 9999998644
No 275
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=87.05 E-value=3.6 Score=25.92 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=41.2
Q ss_pred eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.+|+.+. + ...||.+|.+.+ +++.....+..||.... .....+.-+++|+.|.++-
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~--~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFL--GLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEE--GGGCCCCCCCTTCEEEEEE
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECC--ccccCCcCCCCCCEEEEEe
Confidence 4566554 4 567999998876 56777777888998884 3445677899999998874
No 276
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=86.98 E-value=3.7 Score=29.43 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=36.8
Q ss_pred eEEEEecC---CCcHHHHHHHHhhcC-CCCCCceEEeecC------eeecCCc---cc--cccCCCCCCEEEEecCeecC
Q 045158 185 SIPLEMQD---SSTVNELRHLLLSSK-ILPREDYIFIHKQ------RIMRDNC---SL--RWHGVEYGDILYVFKGTVSR 249 (252)
Q Consensus 185 ~~~l~v~~---~~tV~~Lk~~i~~~~-gip~~~~~l~~~g------~~l~d~~---tL--~~y~I~~gsti~l~~~~~~~ 249 (252)
.+.++++. ..||.+|-+.+.+++ ++.+ -.|.-+| .++=+++ -| .+|-+++||+|.+++ .+.|
T Consensus 31 ~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~--~lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~iip-~vaG 107 (114)
T 1wgk_A 31 KHQVALPGQEEPWDIRNLLVWIKKNLLKERP--ELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIS-TLHG 107 (114)
T ss_dssp EEEEEECCCSSCCBHHHHHHHHTTTTCCSCH--HHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEE-CSCC
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHccchhH--hhCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEeC-CCCC
Confidence 56677773 359999999998875 2211 0110111 1222333 22 468899999998875 3444
Q ss_pred C
Q 045158 250 G 250 (252)
Q Consensus 250 ~ 250 (252)
|
T Consensus 108 G 108 (114)
T 1wgk_A 108 G 108 (114)
T ss_dssp C
T ss_pred C
Confidence 3
No 277
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=86.81 E-value=1.4 Score=29.01 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=42.8
Q ss_pred eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
++|+... + ...||++|-+. .++++....+..||..+. .....++-+++|+.|.++-
T Consensus 5 vNG~~~e--~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVp--r~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 5 INGEQRE--V-QSASVAALMTE----LDCTGGHFAVALNYDVVP--RGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp ETTEEEC--C-CCSBHHHHHHH----TTCCSSSCEEEESSSEEC--HHHHTTCBCCTTCEEEEEC
T ss_pred ECCEEEE--c-CCCcHHHHHHH----cCCCCCcEEEEECCEECC--hHHcCcccCCCCCEEEEEc
Confidence 3466554 4 56899998764 688888888889999884 3567788899999999874
No 278
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=86.73 E-value=5.1 Score=27.20 Aligned_cols=60 Identities=10% Similarity=0.054 Sum_probs=37.5
Q ss_pred CceEEEEecCCCcHHHHHHHHhhcCC-CC------------CCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSSKI-LP------------REDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~~g-ip------------~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
|....++++ ..||.+|.+.+..++. +. .....+.-||+......- .++-+++||+|.+++
T Consensus 16 g~~~~~~~~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 16 GGQKSVSAS-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILP 88 (93)
T ss_dssp TTCSEEEEC-CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEE
T ss_pred CCCeEEecC-CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEEC
Confidence 333346643 4799999999987751 10 113456567765543222 356799999999874
No 279
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=86.22 E-value=2.1 Score=39.54 Aligned_cols=64 Identities=23% Similarity=0.366 Sum_probs=46.8
Q ss_pred CceEEEEecCCCcHHHHHHHHhhc--CCCCC------CceEEee----cCe-eecC-------------CccccccCCCC
Q 045158 183 GASIPLEMQDSSTVNELRHLLLSS--KILPR------EDYIFIH----KQR-IMRD-------------NCSLRWHGVEY 236 (252)
Q Consensus 183 g~~~~l~v~~~~tV~~Lk~~i~~~--~gip~------~~~~l~~----~g~-~l~d-------------~~tL~~y~I~~ 236 (252)
...+++.|-..|||..+|++|-+. .|.|. +.+-|.+ .|+ .|.| =+||++|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 456778899999999999999775 46664 4456665 222 3443 15899999999
Q ss_pred CCEEEEecCe
Q 045158 237 GDILYVFKGT 246 (252)
Q Consensus 237 gsti~l~~~~ 246 (252)
|+++-|++..
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999998654
No 280
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=85.93 E-value=2.9 Score=28.10 Aligned_cols=56 Identities=13% Similarity=0.032 Sum_probs=36.6
Q ss_pred EEecCCCcHHHHHHHHhhcCC------C-----CCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158 188 LEMQDSSTVNELRHLLLSSKI------L-----PREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 188 l~v~~~~tV~~Lk~~i~~~~g------i-----p~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
++++...||.+|.+.+..+.. + ......+..+|+..... .-.++-+++||+|.+++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEEC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeC
Confidence 455556799999999977641 1 12345666677554322 22456799999999984
No 281
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=84.03 E-value=1.3 Score=29.46 Aligned_cols=59 Identities=8% Similarity=0.078 Sum_probs=42.8
Q ss_pred eCCcEEEEeeCCCccHHHHHHHHHHHhCCC-CccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTP-IKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip-~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
++|+.+.+......||.+|-+. .|++ +....+..||..+. .....++-+++|+.|.++-
T Consensus 5 vNGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVp--r~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 5 VNGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLE--REAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp ETTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECC--TTHHHHCEECSSBCEEECC
T ss_pred ECCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECC--hHHcCcccCCCCCEEEEEe
Confidence 3476554432156899998765 4777 77777889999984 3567778899999999874
No 282
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=83.53 E-value=4.8 Score=26.10 Aligned_cols=65 Identities=9% Similarity=0.183 Sum_probs=41.0
Q ss_pred EEEEEEeCC--cEEEEeeCCCccHHHHHHHHHHHhCCCC--ccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 85 IHIIIKFPS--RKFNIDVDRTDTVRSLKEKIHIIDGTPI--KRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 85 ~~i~v~~~g--~~~~l~v~~~~TV~~lK~~I~~~~gip~--~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
|.|.|++-+ +.-.+++ ...||.+|.+.+..+.++.. ....+..||+... + .+.-+++|+.|.++-
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~-~----~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLID-N----LNTPLKDGDVISLLP 69 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEEC-C----TTCCCCTTCEEEEEC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcC-C----CCcCCCCCCEEEEEC
Confidence 456666311 1123455 56799999999987544332 3345667777753 2 356789999998874
No 283
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=82.34 E-value=11 Score=26.83 Aligned_cols=77 Identities=12% Similarity=0.227 Sum_probs=45.9
Q ss_pred CcEEEEEEeC-------C--cEEEEeeCC---CccHHHHHHHHHHHh-CCC---------Cc-cEEEEECceeccccccc
Q 045158 83 DKIHIIIKFP-------S--RKFNIDVDR---TDTVRSLKEKIHIID-GTP---------IK-RMLLFFSGIELDDEFRN 139 (252)
Q Consensus 83 ~~~~i~v~~~-------g--~~~~l~v~~---~~TV~~lK~~I~~~~-gip---------~~-~q~L~~~g~~L~~d~~~ 139 (252)
.+|.|.|++. | +.+.++++. ..||.+|-+.+.++. +.. .. ...++.||...+ - ..
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~-~-l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE-L-LG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHH-H-HC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeee-c-cC
Confidence 4588888853 3 256677773 369999999998775 211 11 123334554211 0 01
Q ss_pred ccccCCCCCCEEEEEeeeccccCCCC
Q 045158 140 LSEYGIREFSEIIVFLKTMNRLRDNP 165 (252)
Q Consensus 140 L~~y~i~~~s~i~l~~~~~~~~~~~~ 165 (252)
=.+|-+++|+.|.++- ...||+
T Consensus 88 gldt~L~dGDeV~iip----~vaGG~ 109 (114)
T 1wgk_A 88 ELDYQLQDQDSILFIS----TLHGGS 109 (114)
T ss_dssp TTTCBCCSSEEEEEEE----CSCCCC
T ss_pred CcCcCCCCCCEEEEeC----CCCCCC
Confidence 1468899999987764 566663
No 284
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=81.77 E-value=8.5 Score=35.62 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=46.7
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHh--CCC------CccEEEEE----Cce-eccccc------------ccccccCCCCC
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIID--GTP------IKRMLLFF----SGI-ELDDEF------------RNLSEYGIREF 148 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~--gip------~~~q~L~~----~g~-~L~~d~------------~~L~~y~i~~~ 148 (252)
..+++.|-.-|||..+|++|-+.. |+| ++...|-| .|+ .|.|.+ .||+.|+|.+|
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence 457888888999999999998764 665 45566776 233 344211 58999999999
Q ss_pred CEEEEEee
Q 045158 149 SEIIVFLK 156 (252)
Q Consensus 149 s~i~l~~~ 156 (252)
+++.|+-+
T Consensus 327 a~v~L~p~ 334 (627)
T 3ig3_A 327 SLVALVPK 334 (627)
T ss_dssp CEEEEEEC
T ss_pred ceEEEEec
Confidence 99998764
No 285
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=81.56 E-value=5.7 Score=34.30 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=42.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCe--ecCCCCCcccccc
Q 045158 8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGW--ELVDGLDMEDYPI 60 (252)
Q Consensus 8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~--~L~d~~~L~~~~i 60 (252)
.-....+.+.+.+|+.+++..+++.++++++.|.|+|.+. .++.......|.-
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 5666788999999999999999999999999999999873 2333344555544
No 286
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=80.54 E-value=5.9 Score=25.04 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=41.1
Q ss_pred eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.+|+.+ ++....||.+|.+.+ +++.....+..||.... . ....+.-+++|+.|.++-
T Consensus 5 vNg~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~-~-~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 5 FNDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVP-R-EQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp ESSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEEC-H-HHHTTCCCCTTEEECEEE
T ss_pred ECCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECC-c-hhcCCcCCCCCCEEEEEe
Confidence 346544 456678999998876 66777777888998874 2 344567789999998864
No 287
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=79.83 E-value=6.8 Score=27.27 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=45.5
Q ss_pred CCceEEEEecCCCcHHHHHHHHhhcCCCCCC-----------ceEEeecC-eeecC------CccccccCCCCCCEEEEe
Q 045158 182 NGASIPLEMQDSSTVNELRHLLLSSKILPRE-----------DYIFIHKQ-RIMRD------NCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~-----------~~~l~~~g-~~l~d------~~tL~~y~I~~gsti~l~ 243 (252)
++....++++++.|..++-+.+.+...+... .-.|+... ..|++ +++|.+.|+.+|+.|.+.
T Consensus 3 g~~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 3 SQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp --CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred CCCcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 3456678999999999999999986432221 33444433 23444 478999999999999987
Q ss_pred cCee
Q 045158 244 KGTV 247 (252)
Q Consensus 244 ~~~~ 247 (252)
...+
T Consensus 83 D~~~ 86 (98)
T 1y8x_B 83 DVTT 86 (98)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6544
No 288
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=76.95 E-value=10 Score=26.30 Aligned_cols=70 Identities=7% Similarity=-0.032 Sum_probs=44.6
Q ss_pred cceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhh---cCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158 169 RLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLS---SKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 169 ~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~---~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
.|.|.|.-.- ......+.+++....||+++=+...- ...|..+...+.-+|+... .++-+++||.|.++.
T Consensus 12 ~~~v~v~ya~-p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 12 QINIEIAYAF-PERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred eEEEEEEEeC-CCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 3566665321 11133456788888999999888742 2244444555555665554 666789999999984
No 289
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=76.89 E-value=13 Score=34.60 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=46.2
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHh--CCCC------ccEEEEE----Cce-eccccc------------ccccccCCCCC
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIID--GTPI------KRMLLFF----SGI-ELDDEF------------RNLSEYGIREF 148 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~--gip~------~~q~L~~----~g~-~L~~d~------------~~L~~y~i~~~ 148 (252)
..+++.|-.-|||.++|++|-+.. |+|. +...|-| .|+ .|.|.+ .||+.|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 347888888999999999998654 6664 4556766 233 354211 59999999999
Q ss_pred CEEEEEee
Q 045158 149 SEIIVFLK 156 (252)
Q Consensus 149 s~i~l~~~ 156 (252)
+++.|+-+
T Consensus 354 a~v~L~p~ 361 (644)
T 3hm6_X 354 ATVALVPC 361 (644)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 99988753
No 290
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=76.57 E-value=10 Score=25.58 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=33.0
Q ss_pred CcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCC
Q 045158 83 DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTP 120 (252)
Q Consensus 83 ~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip 120 (252)
+.|.|-+-+.+..+.+.|+.+-+..+|+.+|.++..+.
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 45666666788899999999999999999999999983
No 291
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=75.74 E-value=4.2 Score=28.37 Aligned_cols=35 Identities=17% Similarity=0.009 Sum_probs=29.7
Q ss_pred EEEEEeC--------CeEEEEEecCCCcHHHHHHHHHHHhCCC
Q 045158 2 RIIIVAN--------GHEFVLEVGLQEPVLEIKRKIEQIFNIP 36 (252)
Q Consensus 2 ~v~v~~~--------g~~~~l~v~~~~tV~~lK~~I~~~~~i~ 36 (252)
+|.|.+. +..+++-|+++.+..+|..+|.++++++
T Consensus 7 kVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 7 LFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 5556554 6679999999999999999999999876
No 292
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=75.38 E-value=5 Score=37.93 Aligned_cols=66 Identities=14% Similarity=0.328 Sum_probs=49.1
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEee-cCeeecCCccccccCC---------CCCCEEEEecC
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIH-KQRIMRDNCSLRWHGV---------EYGDILYVFKG 245 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~-~g~~l~d~~tL~~y~I---------~~gsti~l~~~ 245 (252)
....+...+.+.+..|+.++++.|++.+|+|++.|.|++ .|..|+.......|-+ .+...+|||..
T Consensus 318 ~~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (676)
T 3qa8_A 318 MVSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYVIDCTVIDGRQGEGDLIFLFDN 393 (676)
T ss_dssp SSSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSCCCSCC-------CCCEEECSS
T ss_pred ccccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhheeccccccccCCCCceEEEEec
Confidence 345677788999999999999999999999999887776 4466666666555432 34556778765
No 293
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=75.29 E-value=11 Score=26.25 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=46.6
Q ss_pred eEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCc-eEEe------ecCeeecCCccc----cccCCCCCCEEE
Q 045158 173 KVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPRED-YIFI------HKQRIMRDNCSL----RWHGVEYGDILY 241 (252)
Q Consensus 173 ~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~------~~g~~l~d~~tL----~~y~I~~gsti~ 241 (252)
.|+.+. ..|...++.|++.+|+.++-+.+.++.+...+. ..|+ +..|.++|...| +...+.....++
T Consensus 11 vvkvf~--~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~ 88 (100)
T 1wgr_A 11 VVKVYS--EDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFV 88 (100)
T ss_dssp EEEEEE--TTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEE
T ss_pred EEEEEe--cCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEE
Confidence 444442 578999999999999999999999998876543 3332 133778887654 444555555554
Q ss_pred E
Q 045158 242 V 242 (252)
Q Consensus 242 l 242 (252)
.
T Consensus 89 F 89 (100)
T 1wgr_A 89 F 89 (100)
T ss_dssp E
T ss_pred E
Confidence 4
No 294
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=73.49 E-value=3 Score=39.45 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=42.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEc-CeecCCCCCcccc
Q 045158 8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVS-GWELVDGLDMEDY 58 (252)
Q Consensus 8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~-g~~L~d~~~L~~~ 58 (252)
..+...+.+.+++|+.+++..|++.+|||++.|.+++. |-.++......+|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 45666789999999999999999999999999999985 5566666566654
No 295
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=72.34 E-value=6.5 Score=27.95 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=41.3
Q ss_pred ceeeEEeee--eccCCceEEEEecC----CCcHHHHHHHHhhcCCCCCCceEEeecC--------eeecCCccc-----c
Q 045158 170 LSFKVQTSS--SLLNGASIPLEMQD----SSTVNELRHLLLSSKILPREDYIFIHKQ--------RIMRDNCSL-----R 230 (252)
Q Consensus 170 ~~i~v~~~~--~~~~g~~~~l~v~~----~~tV~~Lk~~i~~~~gip~~~~~l~~~g--------~~l~d~~tL-----~ 230 (252)
|++.|+.+. ..+.|+...++++. ..||.+|-+.+.+...- ...-.|.-+| .+|-+++.. .
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~~-~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gl 83 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYVK-ERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGM 83 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTCC-SCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHccc-cchhhEecCCCcccCCCeEEEECCeeeeccCCc
Confidence 444554433 23345555677663 24999999999887511 1111121112 134444433 4
Q ss_pred ccCCCCCCEEEEec
Q 045158 231 WHGVEYGDILYVFK 244 (252)
Q Consensus 231 ~y~I~~gsti~l~~ 244 (252)
+|-+++||+|.+++
T Consensus 84 dt~L~dgD~V~fis 97 (110)
T 2k9x_A 84 DYVLNDGDTVEFIS 97 (110)
T ss_dssp CCCCCSSCEEEEEE
T ss_pred ccCCCCcCEEEEeC
Confidence 58899999988763
No 296
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=72.31 E-value=19 Score=23.97 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=40.1
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHhC-CC----------CccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIIDG-TP----------IKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~g-ip----------~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
....+++....||.+|.+.+..+.. +. .....+..||+... . ++-+++|+.|.++-
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~-~-----~~~l~~gDeV~i~P 84 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAA-L-----GEATAAGDELALFP 84 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECC-T-----TSBCCTTCEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECC-C-----CcccCCCCEEEEEC
Confidence 5577888778899999999987652 10 01246667888774 3 56689999998874
No 297
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=72.18 E-value=13 Score=31.17 Aligned_cols=68 Identities=9% Similarity=0.071 Sum_probs=50.2
Q ss_pred ceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCce-EEee--cC--eeecCCccccccCCCCCCEEEE
Q 045158 170 LSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDY-IFIH--KQ--RIMRDNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 170 ~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~-~l~~--~g--~~l~d~~tL~~y~I~~gsti~l 242 (252)
+.+.|. .++| ++.++++++.|+.+|-+.|+++.|++...+ -|.+ +| .-|+.++++.+.+++.++...+
T Consensus 23 ~~~~V~----lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l 95 (314)
T 1h4r_A 23 FTVRIV----TMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTF 95 (314)
T ss_dssp EEEEEE----CSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEE
T ss_pred eEEEEE----eCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEE
Confidence 454543 4567 888999999999999999999999986543 3333 44 3478889999988766665433
No 298
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=71.94 E-value=20 Score=24.10 Aligned_cols=56 Identities=5% Similarity=0.049 Sum_probs=36.7
Q ss_pred EEeeCCCccHHHHHHHHHHHhC-C-----C-------CccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 97 NIDVDRTDTVRSLKEKIHIIDG-T-----P-------IKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 97 ~l~v~~~~TV~~lK~~I~~~~g-i-----p-------~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.+++ ...||.+|.+.+..+.. + . .....+..||.... +. .-.++-+++|+.|.++-
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~-~~-~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVR-FS-GGLATAIADGDSVTILP 88 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGG-GT-TGGGCBCCTTCEEEEEE
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEcc-Cc-CCCCcCCCCCCEEEEEC
Confidence 4554 35799999999987752 1 0 11356667887763 31 12356789999998874
No 299
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=70.86 E-value=11 Score=32.51 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=41.1
Q ss_pred CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECce-ecccccccccccC
Q 045158 92 PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGI-ELDDEFRNLSEYG 144 (252)
Q Consensus 92 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~-~L~~d~~~L~~y~ 144 (252)
.-....+.+.+..|+.++++++++.++++++.|.|.+.+. ...+....-..|.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 4556788899999999999999999999999999999873 2223444444443
No 300
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=70.73 E-value=9.7 Score=27.76 Aligned_cols=51 Identities=12% Similarity=0.198 Sum_probs=35.7
Q ss_pred CCcHHHHHHHHhhcCCCCCC-------ceEEeecCeeecC--CccccccCCCCCCEEEEec
Q 045158 193 SSTVNELRHLLLSSKILPRE-------DYIFIHKQRIMRD--NCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 193 ~~tV~~Lk~~i~~~~gip~~-------~~~l~~~g~~l~d--~~tL~~y~I~~gsti~l~~ 244 (252)
..|..+|-+.++++.|.+.+ +++|.|.- -.+| +++|.+.||++|+.|.+..
T Consensus 19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~-DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDY-DFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEET-TBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCC-CccccccCcHHHcCcCCCcEEEEEc
Confidence 35888888888888777631 23444432 1222 4799999999999998874
No 301
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=70.50 E-value=22 Score=24.00 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=37.3
Q ss_pred CEEEEEeCCeEEEEEecCCC-cHHHHHHHHHHHh----CCCCCc-eE---EEE-cCeecCCCCCccc
Q 045158 1 MRIIIVANGHEFVLEVGLQE-PVLEIKRKIEQIF----NIPATS-QT---LAV-SGWELVDGLDMED 57 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~-tV~~lK~~I~~~~----~i~~~~-q~---L~~-~g~~L~d~~~L~~ 57 (252)
|+|+|.+++..+.+.+.++. ||.+|-++-..+. +-.++. -. |-+ .|-.|+.+..|.+
T Consensus 3 MKvtV~fg~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~d 69 (85)
T 2ns5_A 3 FKVTVCFGRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCD 69 (85)
T ss_dssp EEEEEEETTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHH
T ss_pred cEEEEEECCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhh
Confidence 89999999999999996654 9999966544432 332222 22 223 5667776665554
No 302
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=68.79 E-value=32 Score=28.27 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=51.2
Q ss_pred EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCcc-EEEEE---Cce--ecccccccccccCCCCCCEEEEEee
Q 045158 85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKR-MLLFF---SGI--ELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~-q~L~~---~g~--~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
+.+.|.+.+.++.+.++++.|+.++-+.|.++.|+.... .-|.+ +|. -| +....+.+.++..+....|.++
T Consensus 2 i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wL-d~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWL-KLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEEC-CSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeec-ccccCHHhhccCCCCCEEEEEE
Confidence 567777644478899999999999999999999987543 45665 232 35 4667888877666666666553
No 303
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=68.14 E-value=4.6 Score=26.89 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=33.8
Q ss_pred HHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCCC
Q 045158 200 RHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGGY 252 (252)
Q Consensus 200 k~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~~ 252 (252)
++++-+++++..++.= +.+.+|--..+||.++||.|-+...+-+.|.|
T Consensus 20 k~~lL~~y~i~~~qLP-----rI~~~DPvar~~G~k~GdVvkI~R~S~taG~~ 67 (78)
T 1hmj_A 20 VEEILKRYNIKIQQLP-----KIYEDDPVIQEIGAKEGDVVRVIRKSPTAGVS 67 (78)
T ss_pred HHHHHHHcCCCHHHCC-----eeeCcCHhhHHhCCCCCCEEEEEECCCCCCCc
Confidence 3444455666555432 23566677788899999999999988888765
No 304
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=67.65 E-value=13 Score=25.53 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=34.8
Q ss_pred EecCCCcHHHHHHHHhhcC-CCCC---------Cce-------EEeecCeeecCCccccccCCCCCCEEEEecCeecC
Q 045158 189 EMQDSSTVNELRHLLLSSK-ILPR---------EDY-------IFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR 249 (252)
Q Consensus 189 ~v~~~~tV~~Lk~~i~~~~-gip~---------~~~-------~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~ 249 (252)
+++ ..||.+|.+.+..+. ++.. ... .+..||+..... .-.++-+++||+|.+++ .++|
T Consensus 24 ~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~-~~~~~~L~~gD~V~i~p-pv~G 98 (99)
T 2l52_A 24 PLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL-EGLETLLKDSDEIGILP-PVSG 98 (99)
T ss_dssp EEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT-TSTTSCCCTTEEEEEEC-CCSC
T ss_pred EEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcccc-CCCCCCCCCCCEEEEEC-CCCC
Confidence 344 579999999997764 1111 012 455566443221 12456789999999985 3443
No 305
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=65.90 E-value=10 Score=26.42 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=30.7
Q ss_pred cEEEEEEeC--------CcEEEEeeCCCccHHHHHHHHHHHhCCC
Q 045158 84 KIHIIIKFP--------SRKFNIDVDRTDTVRSLKEKIHIIDGTP 120 (252)
Q Consensus 84 ~~~i~v~~~--------g~~~~l~v~~~~TV~~lK~~I~~~~gip 120 (252)
.+.|.|.+. +..+.+-|.++.+..+|..+|.++.+++
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 466666654 4568999999999999999999999876
No 306
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=64.75 E-value=20 Score=29.56 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=46.1
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCc-eEEee---cC--eeecCCccccccCCCCCCEEEE
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPRED-YIFIH---KQ--RIMRDNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~---~g--~~l~d~~tL~~y~I~~gsti~l 242 (252)
..| +..+.++++.|+.+|-+.|+++.|+.... +-|.+ +| .-|+.++++.+.+++.+....+
T Consensus 9 ~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l 75 (294)
T 1ef1_A 9 MDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLF 75 (294)
T ss_dssp TTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEE
T ss_pred CCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEE
Confidence 455 78899999999999999999999997655 33433 33 3577888999887766665544
No 307
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=63.67 E-value=32 Score=23.47 Aligned_cols=67 Identities=9% Similarity=0.083 Sum_probs=41.5
Q ss_pred cEEEEEEeC-------C-cEEEEeeCCCccHHHHHHHHHHHh-CCCC---------ccE-------EEEECceecccccc
Q 045158 84 KIHIIIKFP-------S-RKFNIDVDRTDTVRSLKEKIHIID-GTPI---------KRM-------LLFFSGIELDDEFR 138 (252)
Q Consensus 84 ~~~i~v~~~-------g-~~~~l~v~~~~TV~~lK~~I~~~~-gip~---------~~q-------~L~~~g~~L~~d~~ 138 (252)
+|.+.|++. | +...++ ..||.+|.+.+..+. ++.. ... .+..||+... . .
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~-~-~ 77 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIR-H-L 77 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGG-G-T
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcc-c-c
Confidence 477888843 2 344444 579999999998764 1111 012 5667777652 2 1
Q ss_pred cccccCCCCCCEEEEEe
Q 045158 139 NLSEYGIREFSEIIVFL 155 (252)
Q Consensus 139 ~L~~y~i~~~s~i~l~~ 155 (252)
.-.++-+++|+.|.++-
T Consensus 78 ~~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 78 EGLETLLKDSDEIGILP 94 (99)
T ss_dssp TSTTSCCCTTEEEEEEC
T ss_pred CCCCCCCCCCCEEEEEC
Confidence 23456789999988763
No 308
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=63.12 E-value=15 Score=25.02 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=31.1
Q ss_pred EEEecCCCcHHHHHHHHhhcCCCCCCc-eEEeecCeee-cCCccc
Q 045158 187 PLEMQDSSTVNELRHLLLSSKILPRED-YIFIHKQRIM-RDNCSL 229 (252)
Q Consensus 187 ~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~~g~~l-~d~~tL 229 (252)
.+-|+.+.||+.+...|+.+..+++++ .+|..++..+ ..+.++
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~ 67 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEV 67 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBH
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHH
Confidence 366888999999999999999998876 4554465433 334443
No 309
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=62.96 E-value=35 Score=23.65 Aligned_cols=69 Identities=9% Similarity=0.125 Sum_probs=51.8
Q ss_pred EEEEEE-eCC---cEEEEeeCCCccHHHHHHHHHHHhCCCC--ccEEEEECc---eecccccccccccCCCCCCEEEEE
Q 045158 85 IHIIIK-FPS---RKFNIDVDRTDTVRSLKEKIHIIDGTPI--KRMLLFFSG---IELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 85 ~~i~v~-~~g---~~~~l~v~~~~TV~~lK~~I~~~~gip~--~~q~L~~~g---~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
+.|+|. .+. ...++.|..+.-|.-+..++-++..++- +.--|-+.- +.|. -..+|..|||+.++.+++.
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlk-t~~tLDkygiqADa~L~ft 97 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLK-THWTLDKCGVQADANLLFT 97 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECC-TTSBHHHHTCCTTSCEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhh-hhhhhhhhceeeeeeeecc
Confidence 456666 222 4588999999999999999998887753 355566533 4564 8899999999999988864
No 310
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=62.80 E-value=35 Score=23.63 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=47.8
Q ss_pred ceEEEEecCCCcHHHHHHHHhhcCCCCCC--ceEEeecCe---eecCCccccccCCCCCCEEEEec
Q 045158 184 ASIPLEMQDSSTVNELRHLLLSSKILPRE--DYIFIHKQR---IMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 184 ~~~~l~v~~~~tV~~Lk~~i~~~~gip~~--~~~l~~~g~---~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
...++.|.....|.-+.-+|.++..++.+ .+.|-...+ .+.-..||.-|||+..+.++.-+
T Consensus 33 ~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 33 TEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred ccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 55678888889999999999988877764 566665442 56778899999999998887643
No 311
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=62.15 E-value=26 Score=22.64 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=37.2
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHhC-----CCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIIDG-----TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~g-----ip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
....++ ....||.+|.+.+..... ++.....+..||+... . +.-+++|+.|.++-
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-~-----~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-F-----DHPLTDGDEVAFFP 76 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-T-----TCBCCTTCEEEEEC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-C-----CCCCCCCCEEEEeC
Confidence 345666 567799999999875531 2233345777887763 2 55789999988763
No 312
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=61.83 E-value=21 Score=32.92 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=46.6
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCc-eEEee---cC--eeecCCccccccCCCCCCEEEE
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPRED-YIFIH---KQ--RIMRDNCSLRWHGVEYGDILYV 242 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~---~g--~~l~d~~tL~~y~I~~gsti~l 242 (252)
+.| ++.+.|+++.|+.+|-..|+...|++... +-|.+ +| .-|+.+.++.+.+++.+....+
T Consensus 12 lDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L 78 (575)
T 2i1j_A 12 MDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQF 78 (575)
T ss_dssp SSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEE
T ss_pred CCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEE
Confidence 456 78899999999999999999999997654 34443 22 4677788999888877765544
No 313
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=59.92 E-value=50 Score=27.45 Aligned_cols=73 Identities=7% Similarity=0.012 Sum_probs=52.9
Q ss_pred CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCc-cEEEEE--Cce--ecccccccccccCCCCCCEEEEEe
Q 045158 82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIK-RMLLFF--SGI--ELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~-~q~L~~--~g~--~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
...+.+.|.+ +| ++.+.++++.|+.+|-+.|.++.|+... ..-|.+ +|. -| +....+.+.....+....+.+
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL-~~~~~i~~q~~~~~~~~~l~f 97 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWL-KMDKKVLDHDVSKEEPVTFHF 97 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEEC-CTTSBGGGSSCCCSSSEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeC-CCccCHHHcCCCCCCCEEEEE
Confidence 4457777885 56 8889999999999999999999998743 344555 333 25 467888888776666665555
Q ss_pred e
Q 045158 156 K 156 (252)
Q Consensus 156 ~ 156 (252)
+
T Consensus 98 r 98 (314)
T 1h4r_A 98 L 98 (314)
T ss_dssp E
T ss_pred E
Confidence 3
No 314
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=57.93 E-value=4 Score=27.09 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=32.4
Q ss_pred HHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCCC
Q 045158 201 HLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGGY 252 (252)
Q Consensus 201 ~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~~ 252 (252)
+++-+++++..++.= +.+.+|--..+||.++||.|-+...+-+.|.|
T Consensus 23 ~~lL~~y~i~~~qLP-----~I~~~DPvar~~G~k~GdVvkI~R~S~taG~~ 69 (77)
T 1eik_A 23 KRVLKELDAHPEQLP-----KIKTTDPVAKAIGAKRGDIVKIIRKSPTAEEF 69 (77)
T ss_dssp HHHHHHTTCCTTTSC-----CCBTTSHHHHGGGCCTTCEEEEEEEETTTEEE
T ss_pred HHHHHHcCCCHHHCC-----eeeCcCHhhHHhCCCCCCEEEEEECCCCCCCc
Confidence 344445566555532 23566677888899999999999888776643
No 315
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=57.69 E-value=28 Score=22.23 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=37.6
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHhCCCCccE--EEEECceecccccccccccCCCCCCEEEEE
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRM--LLFFSGIELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q--~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
+...+++....||.+|.+.+.....- .... .+..||+... . +.-+++|+.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~-~-----~~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQ-K-----SDFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEEC-T-----TSEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECC-C-----CCCcCCCCEEEEE
Confidence 34567777788999999998776310 1222 5778888774 3 3568899998876
No 316
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=57.18 E-value=28 Score=24.52 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=31.9
Q ss_pred EEecCCCcHHHHHHHHhhcCCCCCCc-eEEeecCeeecCCccccc
Q 045158 188 LEMQDSSTVNELRHLLLSSKILPRED-YIFIHKQRIMRDNCSLRW 231 (252)
Q Consensus 188 l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~~g~~l~d~~tL~~ 231 (252)
+-|+.+.||+++...|..+..+++++ .+|..++.....+.++.+
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 92 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQ 92 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHH
Confidence 56788899999999999999998876 455556654444555543
No 317
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=56.85 E-value=43 Score=22.75 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=35.6
Q ss_pred cEEEEeeC--CCccHHHHHHHHHHHhC-CCCc------------cEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 94 RKFNIDVD--RTDTVRSLKEKIHIIDG-TPIK------------RMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 94 ~~~~l~v~--~~~TV~~lK~~I~~~~g-ip~~------------~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
+...+++. ...||.+|.+.+.++.. .... ...+..|+...+ - ..=.++-+++|+.|.++-
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~-~-~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE-L-EGEKDYILEDGDIISFTS 94 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG-G-GTGGGCBCCTTCEEEEEE
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc-c-cCCCCcCcCCCCEEEEEC
Confidence 34666666 56899999999987762 1110 112344554321 0 001366789999988763
No 318
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=54.10 E-value=31 Score=24.00 Aligned_cols=40 Identities=10% Similarity=-0.032 Sum_probs=31.2
Q ss_pred cEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCcc
Q 045158 84 KIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKR 123 (252)
Q Consensus 84 ~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~ 123 (252)
+.-|.|-. +|....+.|+.++|++++-+.+.++.+.....
T Consensus 9 k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~ 49 (100)
T 1wgr_A 9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDE 49 (100)
T ss_dssp CEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCC
T ss_pred CEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCC
Confidence 33344443 68889999999999999999999998875443
No 319
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=53.21 E-value=34 Score=23.66 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=42.1
Q ss_pred EEEEeeCCCccHHHHHHHHHHHhCCCCc-----------cEEEEECc-eeccc-----ccccccccCCCCCCEEEEEe
Q 045158 95 KFNIDVDRTDTVRSLKEKIHIIDGTPIK-----------RMLLFFSG-IELDD-----EFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 95 ~~~l~v~~~~TV~~lK~~I~~~~gip~~-----------~q~L~~~g-~~L~~-----d~~~L~~y~i~~~s~i~l~~ 155 (252)
...++++++.|..+|-+.+.++..+-.. ...|++.+ ..|++ =+++|.+.|+.+|..|++.-
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD 83 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 83 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEEC
Confidence 4567899999999999999985443222 34455444 12321 13679999999999998853
No 320
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=52.92 E-value=57 Score=30.01 Aligned_cols=72 Identities=7% Similarity=0.141 Sum_probs=52.2
Q ss_pred cEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCc-cEEEEECc-----eecccccccccccCCCCCCEEEEEee
Q 045158 84 KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIK-RMLLFFSG-----IELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 84 ~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~-~q~L~~~g-----~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
.+.+.|.+.+.++.+.++++.|+.+|-..|..+.|++.. ..-|.+.. .-| +...++.+.++..+....|.++
T Consensus 4 ~i~v~V~llDgt~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WL-d~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 4 SMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWI-KLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEEC-CTTSBGGGSCBCCCSSEEEEEE
T ss_pred eEEEEEEeCCCeEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHh-hccccHHHhcccCCCCeEEEEE
Confidence 467777753337889999999999999999999998644 45566632 235 4667888877766666666553
No 321
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=52.06 E-value=47 Score=21.77 Aligned_cols=54 Identities=15% Similarity=0.297 Sum_probs=35.6
Q ss_pred eeCCCccHHHHHHHHHHHhC------C-----CCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158 99 DVDRTDTVRSLKEKIHIIDG------T-----PIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 99 ~v~~~~TV~~lK~~I~~~~g------i-----p~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
++....||.+|.+.+..... + ......+..||+... . ..-.+.-+++|+.|.++
T Consensus 20 ~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~-~-~~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 20 TFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNIT-S-MKGLDTEIKDDDKIDLF 84 (90)
T ss_dssp EESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGG-G-TCSSSCBCCTTCEEEEE
T ss_pred EcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcc-c-cCCCCcCCCCCCEEEEe
Confidence 45556899999999987641 1 113345677887663 2 12346678999998876
No 322
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=51.51 E-value=41 Score=24.53 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=40.9
Q ss_pred CCcEEEEEE-eCCcE-------EEEeeCCCccHHHHHHHHHHHhCCCCccEEEE-ECceecccccccccc
Q 045158 82 HDKIHIIIK-FPSRK-------FNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF-FSGIELDDEFRNLSE 142 (252)
Q Consensus 82 ~~~~~i~v~-~~g~~-------~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~-~~g~~L~~d~~~L~~ 142 (252)
+..+.|.|. .++.. -.+-|..+.||+++..-|..+.++++++-..+ |.+..+...+.++++
T Consensus 33 P~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~ 102 (130)
T 2zjd_A 33 PTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISE 102 (130)
T ss_dssp TTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHH
T ss_pred CCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHH
Confidence 455667775 43211 33568889999999999999999998876644 655544334455544
No 323
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=51.07 E-value=40 Score=25.66 Aligned_cols=61 Identities=25% Similarity=0.212 Sum_probs=39.1
Q ss_pred EEEecCCCcHHHHHHHHhhcC-CCC---------CCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCC
Q 045158 187 PLEMQDSSTVNELRHLLLSSK-ILP---------REDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG 250 (252)
Q Consensus 187 ~l~v~~~~tV~~Lk~~i~~~~-gip---------~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~ 250 (252)
.++++. .||.+|.+.+...+ ++. .....+..||+..... .-.++-+++||+|.+++ .++||
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~-~~~dt~L~dGDeVai~P-pVsGG 87 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYL-QGLSTPLSPGATLDLFP-PVAGG 87 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGT-TGGGCBCCTTCEEEEEC-SCCSE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCc-CCCccCCCCCCEEEEEC-ccccc
Confidence 345555 79999999997664 111 1234566677655432 23456799999999975 35554
No 324
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=50.23 E-value=17 Score=30.30 Aligned_cols=69 Identities=12% Similarity=0.017 Sum_probs=47.6
Q ss_pred cceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCc-eEEee---cC--eeecCCccccccCCCCCCEEE
Q 045158 169 RLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPRED-YIFIH---KQ--RIMRDNCSLRWHGVEYGDILY 241 (252)
Q Consensus 169 ~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~---~g--~~l~d~~tL~~y~I~~gsti~ 241 (252)
.+.+.|. .++|...+++|++..|+.+|-+.|+++.|+.... +-|.+ +| .-|+.++++.+......-+++
T Consensus 17 ~~~~~V~----lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~ 91 (296)
T 3qij_A 17 QGHCKVS----LLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFT 91 (296)
T ss_dssp CCEEEEE----CTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEE
T ss_pred eEEEEEE----ccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEE
Confidence 3555554 5789999999999999999999999999998654 33333 22 456777777776543333443
No 325
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=49.71 E-value=37 Score=23.96 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHH
Q 045158 8 NGHEFVLEVGLQEPVLEIKRKIEQI 32 (252)
Q Consensus 8 ~g~~~~l~v~~~~tV~~lK~~I~~~ 32 (252)
+|-.+.++++.+.|+.++|..+.++
T Consensus 28 nGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 28 NGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp TSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred cEEEEEEEeeccccHHHHHHHHHHH
Confidence 8999999999999999999988876
No 326
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=47.38 E-value=21 Score=27.25 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=23.7
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHH
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRK 28 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~ 28 (252)
|.|.++.+|+.+.+++++++|+.++=..
T Consensus 4 ~~i~~~vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 4 AHIELTINGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHH
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHH
Confidence 4677788999999999999999986544
No 327
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=46.61 E-value=60 Score=22.53 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=34.1
Q ss_pred EEEEe--CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEc
Q 045158 3 IIIVA--NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVS 45 (252)
Q Consensus 3 v~v~~--~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~ 45 (252)
|.|++ .|+...+.+...-+..+|.+++.+.+|-+. .|.|.
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~l---dL~y~ 50 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSM---DLHYT 50 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSCE---EEEEC
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCee---eEEEe
Confidence 45554 999999999999999999999999999864 46665
No 328
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=46.56 E-value=40 Score=24.03 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=31.6
Q ss_pred EEecCCCcHHHHHHHHhhcCCCCCCc-eEEeecCeeecCCccccc
Q 045158 188 LEMQDSSTVNELRHLLLSSKILPRED-YIFIHKQRIMRDNCSLRW 231 (252)
Q Consensus 188 l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~~g~~l~d~~tL~~ 231 (252)
+-|+.+.||+++...|..+..+++++ .+|..++.....+.++.+
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 93 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQ 93 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHH
Confidence 45788889999999999998998876 455556654444555543
No 329
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=46.42 E-value=28 Score=28.90 Aligned_cols=73 Identities=8% Similarity=-0.059 Sum_probs=49.2
Q ss_pred CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCcc-EEEEEC---c--eecccccccccccCCCCCCEEEEE
Q 045158 82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKR-MLLFFS---G--IELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~-q~L~~~---g--~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
...+.+.|.+ +|....+.+++..|+.+|-..|.++.|+.... .-|.+. | .-| +..+.+.+.......++.+.
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wL-d~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWL-DSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEEC-CTTSBHHHHC---CCEEEEE
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchh-ccchhHHHhcCCCCcEEEEE
Confidence 3457788884 78889999999999999999999999987443 456653 2 135 36667776644334455554
Q ss_pred e
Q 045158 155 L 155 (252)
Q Consensus 155 ~ 155 (252)
.
T Consensus 94 v 94 (296)
T 3qij_A 94 V 94 (296)
T ss_dssp E
T ss_pred E
Confidence 4
No 330
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=46.09 E-value=64 Score=21.53 Aligned_cols=58 Identities=9% Similarity=0.082 Sum_probs=46.5
Q ss_pred EEEecCCCcHHHHHHHHhhc-CC--C-CC-C-ceEEeecC--eeecCCccccccCCCCCCEEEEec
Q 045158 187 PLEMQDSSTVNELRHLLLSS-KI--L-PR-E-DYIFIHKQ--RIMRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 187 ~l~v~~~~tV~~Lk~~i~~~-~g--i-p~-~-~~~l~~~g--~~l~d~~tL~~y~I~~gsti~l~~ 244 (252)
.+.|+..+|..++-+++-.. .| + |. . -++..++| +.+..+.|+++-||.+-+.|.++.
T Consensus 16 LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 16 LVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 36799999999999998654 22 3 22 2 36777888 999999999999999999998764
No 331
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=46.01 E-value=64 Score=21.54 Aligned_cols=69 Identities=16% Similarity=0.083 Sum_probs=52.9
Q ss_pred EEEEEeCCc--EEEEeeCCCccHHHHHHHHHHHh-CCC----CccEEEEECcee--cccccccccccCCCCCCEEEEEe
Q 045158 86 HIIIKFPSR--KFNIDVDRTDTVRSLKEKIHIID-GTP----IKRMLLFFSGIE--LDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 86 ~i~v~~~g~--~~~l~v~~~~TV~~lK~~I~~~~-gip----~~~q~L~~~g~~--L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.+..++.|. ..-+.|+..+|+.++-+++..+. |.- +...+...+|.. +. ++.++++-||.+-..|.+..
T Consensus 5 Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~P-r~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 5 PVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFP-RDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCC-TTCBHHHHCCCTTCEEEEEE
T ss_pred ceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCC-CCCEeeccCCCcceEEEEEE
Confidence 444555443 25678999999999999999876 531 235678889987 85 88999999999999988764
No 332
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=45.99 E-value=22 Score=27.07 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=23.8
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHHH
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKRK 28 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~ 28 (252)
|.|.|+.+|+.+.+++.+++|+.++=..
T Consensus 10 m~i~~~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISATINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEEETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 5677788999999999999999887554
No 333
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=45.74 E-value=76 Score=22.31 Aligned_cols=56 Identities=21% Similarity=0.295 Sum_probs=38.9
Q ss_pred ccCCceEEEEecCCCcHHHHHHHHhhc-CCC-------CCCceEEee-c--C--eee-cCCccccccCCC
Q 045158 180 LLNGASIPLEMQDSSTVNELRHLLLSS-KIL-------PREDYIFIH-K--Q--RIM-RDNCSLRWHGVE 235 (252)
Q Consensus 180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~-~gi-------p~~~~~l~~-~--g--~~l-~d~~tL~~y~I~ 235 (252)
..+|-.+++++..+.|+.++|+++-+. ... .++.|.|.+ + + .++ ++++.|-+...-
T Consensus 26 lPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 26 LPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp CTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred cCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 457889999999999999999988554 222 345677766 2 2 345 445788766543
No 334
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=45.28 E-value=23 Score=26.87 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.2
Q ss_pred CEEEEEeCCeEEEEEecCCCcHHHHHH
Q 045158 1 MRIIIVANGHEFVLEVGLQEPVLEIKR 27 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~tV~~lK~ 27 (252)
|.|.++.+|+.+.++++++.|+.++=.
T Consensus 4 ~~i~~~vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLNLNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEEETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEEECCEEEEEecCCCCCHHHHHH
Confidence 467778899999999999999998743
No 335
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=44.49 E-value=86 Score=22.71 Aligned_cols=52 Identities=21% Similarity=0.038 Sum_probs=36.8
Q ss_pred CccHHHHHHHHHHHhCCCCccEEEEE--Cceeccc------ccccccccCCCCCCEEEEEe
Q 045158 103 TDTVRSLKEKIHIIDGTPIKRMLLFF--SGIELDD------EFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 103 ~~TV~~lK~~I~~~~gip~~~q~L~~--~g~~L~~------d~~~L~~y~i~~~s~i~l~~ 155 (252)
..|..+|-..+..+.|.+- ...+.- ..+.|.| -.++|++.|+++|+.|.+.-
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 5699998888988899863 444332 2333321 13799999999999998875
No 336
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=42.64 E-value=28 Score=26.48 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=23.0
Q ss_pred EEEEEeCCeEEEEEecCCCcHHHHHHH
Q 045158 2 RIIIVANGHEFVLEVGLQEPVLEIKRK 28 (252)
Q Consensus 2 ~v~v~~~g~~~~l~v~~~~tV~~lK~~ 28 (252)
.|.+..+|+.+.+++++++|+.++=..
T Consensus 5 ~i~~~vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVNVNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEEETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 567778999999999999999986544
No 337
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=42.29 E-value=64 Score=21.98 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=32.7
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHhCCCCccEE-EEECce
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRML-LFFSGI 131 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~-L~~~g~ 131 (252)
+.+.+.|++..|=.++|+.++..+++.+.... +...|+
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 57899999999999999999999999988765 556665
No 338
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=41.47 E-value=77 Score=21.15 Aligned_cols=58 Identities=3% Similarity=0.005 Sum_probs=46.9
Q ss_pred EEEecCCCcHHHHHHHHhhc-CCC--CC--CceEEeecCee--ecCCccccccCCCCCCEEEEec
Q 045158 187 PLEMQDSSTVNELRHLLLSS-KIL--PR--EDYIFIHKQRI--MRDNCSLRWHGVEYGDILYVFK 244 (252)
Q Consensus 187 ~l~v~~~~tV~~Lk~~i~~~-~gi--p~--~~~~l~~~g~~--l~d~~tL~~y~I~~gsti~l~~ 244 (252)
.+.|+..+|..++-+++... .|. ++ .-.+.-++|.. +..+.|+++-||++-+.|.++.
T Consensus 18 Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 18 LVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 36799999999999999765 243 22 24678888877 9999999999999999998874
No 339
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=40.65 E-value=27 Score=23.02 Aligned_cols=26 Identities=15% Similarity=-0.011 Sum_probs=23.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCCC
Q 045158 11 EFVLEVGLQEPVLEIKRKIEQIFNIP 36 (252)
Q Consensus 11 ~~~l~v~~~~tV~~lK~~I~~~~~i~ 36 (252)
.++|-|+++.+..+|..+|.++++.+
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 57899999999999999999999975
No 340
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=40.54 E-value=25 Score=24.81 Aligned_cols=60 Identities=10% Similarity=0.198 Sum_probs=46.8
Q ss_pred ceEEEEecCCCcHHHHHHHHhhcCCCCCC--ceEEeecCe---eecCCccccccCCCCCCEEEEe
Q 045158 184 ASIPLEMQDSSTVNELRHLLLSSKILPRE--DYIFIHKQR---IMRDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 184 ~~~~l~v~~~~tV~~Lk~~i~~~~gip~~--~~~l~~~g~---~l~d~~tL~~y~I~~gsti~l~ 243 (252)
...++.|.....|.-+.-+|.++..++.+ ++.|-...+ .+.-..||..|||+..+.++.-
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 67778888888999999999998888764 555555332 4677889999999998877543
No 341
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=40.32 E-value=29 Score=24.49 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=45.8
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHhCCCC--ccEEEEECc---eecccccccccccCCCCCCEEEEE
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIIDGTPI--KRMLLFFSG---IELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~gip~--~~q~L~~~g---~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
...++.|..+.-|..+..++-++..++- +.--|-+.- +.|. -..+|..|||+.++.+++.
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlk-t~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLK-THWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECC-TTSCHHHHTCCTTCBBCBB
T ss_pred ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhc-chhhHhhhceeccccceec
Confidence 6788899988999999999998887652 234455422 3564 8899999999999987653
No 342
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.37 E-value=76 Score=21.59 Aligned_cols=55 Identities=13% Similarity=0.015 Sum_probs=35.2
Q ss_pred CcHHHHHHHHHHHhCCCCCceEEEE--cCeecCCCCCccccccccCCcEEEEEecCCCCcc
Q 045158 20 EPVLEIKRKIEQIFNIPATSQTLAV--SGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSS 78 (252)
Q Consensus 20 ~tV~~lK~~I~~~~~i~~~~q~L~~--~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~~~~ 78 (252)
.+..+|+.|...+++++...-+|.. .|..++|+.-+..+ ++.| +.+++.+...|.
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT-~lmvL~~ge~W~ 84 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNT-HFMILEKGQKWM 84 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSE-EEEEEETTCCCC
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCC-EEEEEcCCCccC
Confidence 4799999999999999765666654 47777665322222 2556 445555554443
No 343
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=39.03 E-value=88 Score=29.80 Aligned_cols=65 Identities=18% Similarity=0.099 Sum_probs=42.8
Q ss_pred CCceEEEEecCCCcHHHHHHHHhhcCCCCCCc----------eEEeecCe--e----e--cCCccccccCCCCCCEEEEe
Q 045158 182 NGASIPLEMQDSSTVNELRHLLLSSKILPRED----------YIFIHKQR--I----M--RDNCSLRWHGVEYGDILYVF 243 (252)
Q Consensus 182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~----------~~l~~~g~--~----l--~d~~tL~~y~I~~gsti~l~ 243 (252)
+.....++++...|..++-+.++.+..+.... ..+.|... . . +-+++|.+.||.+|+.|.+.
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 710 SQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp SCCCEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred CceeEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 34456688887889999999999875432222 23333221 1 1 12478999999999999987
Q ss_pred cCe
Q 045158 244 KGT 246 (252)
Q Consensus 244 ~~~ 246 (252)
...
T Consensus 790 ~~~ 792 (805)
T 2nvu_B 790 DVT 792 (805)
T ss_dssp CTT
T ss_pred cCC
Confidence 643
No 344
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=39.01 E-value=83 Score=21.78 Aligned_cols=54 Identities=15% Similarity=0.027 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHHHhCCCCC--ceEEE--EcCeecCCCCCccccccccCCcEEEEEecCCCCc
Q 045158 20 EPVLEIKRKIEQIFNIPAT--SQTLA--VSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQS 77 (252)
Q Consensus 20 ~tV~~lK~~I~~~~~i~~~--~q~L~--~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~~~ 77 (252)
.+..+|+.|...+++++.. .-+|. ..|..++|+.=+... . ++| +.+++.+...|
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL--p-~nT-~lmvL~~ge~W 94 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL--P-SNT-KFVALACNEKW 94 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS--C-SCC-EEEEECSSSCC
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC--C-CCC-EEEEEcCCCcc
Confidence 5799999999999999753 24554 368888766432222 2 556 44445544444
No 345
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=38.39 E-value=89 Score=20.99 Aligned_cols=44 Identities=16% Similarity=0.043 Sum_probs=30.1
Q ss_pred cEEEEEEeC-C-cEEEEeeCC-CccHHHHHHHHHHHhCCCCccEEEE
Q 045158 84 KIHIIIKFP-S-RKFNIDVDR-TDTVRSLKEKIHIIDGTPIKRMLLF 127 (252)
Q Consensus 84 ~~~i~v~~~-g-~~~~l~v~~-~~TV~~lK~~I~~~~gip~~~q~L~ 127 (252)
+-.|+-++. . ..-++.++. .-+|.+||+.|..+.++-....-|.
T Consensus 6 mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~ 52 (86)
T 2c7h_A 6 MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQ 52 (86)
T ss_dssp BEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEE
T ss_pred eeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEE
Confidence 345777763 2 335566665 7799999999999887755555544
No 346
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=38.29 E-value=1.1e+02 Score=21.90 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=57.9
Q ss_pred CcCCcEEEEEEeCC-----cEEEEeeCCCccHHHHHHHHHHH-h-------CCCCccEEEEECceecc-cccccccccCC
Q 045158 80 NQHDKIHIIIKFPS-----RKFNIDVDRTDTVRSLKEKIHII-D-------GTPIKRMLLFFSGIELD-DEFRNLSEYGI 145 (252)
Q Consensus 80 ~~~~~~~i~v~~~g-----~~~~l~v~~~~TV~~lK~~I~~~-~-------gip~~~q~L~~~g~~L~-~d~~~L~~y~i 145 (252)
..++.+-++|-+.+ ..+.+.+.+.++..+|-+.+-.- . .|.-++-.-..+|+... |.+++|.+-|+
T Consensus 19 nF~g~qLlYigWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~ 98 (119)
T 3u52_E 19 NFHGMQLLYVYWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGI 98 (119)
T ss_dssp GGTTCEEEEEECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTC
T ss_pred hCCCCEEEEEEecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCC
Confidence 45677788888765 45889999999999988877542 2 35555555667898775 56789999999
Q ss_pred CCCCEEEEE
Q 045158 146 REFSEIIVF 154 (252)
Q Consensus 146 ~~~s~i~l~ 154 (252)
...|.|++.
T Consensus 99 ~HKs~lrf~ 107 (119)
T 3u52_E 99 DHKSMLTVT 107 (119)
T ss_dssp CTTEEEEEE
T ss_pred CchheEEEe
Confidence 999999986
No 347
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=38.21 E-value=87 Score=20.85 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=47.9
Q ss_pred EEEeeCCCccHHHHHHHHHHHh-C--C---CCccEEEEECc--eecccccccccccCCCCCCEEEEEe
Q 045158 96 FNIDVDRTDTVRSLKEKIHIID-G--T---PIKRMLLFFSG--IELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 96 ~~l~v~~~~TV~~lK~~I~~~~-g--i---p~~~q~L~~~g--~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
.-+.|+..+|..++-++++.+. | + |-...+..++| +.+. .+.|+++-||.+-..|.+.+
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~p-r~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFP-RGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEEC-TTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCC-CCCEeeccCCCCceEEEEEE
Confidence 5578999999999999998875 4 3 22246677888 8895 88999999999999888765
No 348
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=37.86 E-value=39 Score=23.22 Aligned_cols=32 Identities=6% Similarity=0.048 Sum_probs=25.0
Q ss_pred EEEecCCCcHHHHHHHHhhcCCCCCCceEEeecC
Q 045158 187 PLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ 220 (252)
Q Consensus 187 ~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g 220 (252)
.+-|+.+.||+.+-..|+.+..++ ..+|..++
T Consensus 31 KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~ 62 (96)
T 1wz3_A 31 KFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNS 62 (96)
T ss_dssp EEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECC
Confidence 466888999999999999998887 55554444
No 349
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=37.64 E-value=85 Score=20.63 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=32.5
Q ss_pred EEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEE
Q 045158 3 IIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAV 44 (252)
Q Consensus 3 v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~ 44 (252)
+.+.+ +++.-.++|.|+.|+.+--.|+.+..|+.++ +.-+|
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe-~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPE-CCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGG-GEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHH-HeEEE
Confidence 34555 6667779999999999999999999999875 44444
No 350
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=37.60 E-value=94 Score=21.03 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=34.5
Q ss_pred EEEE--eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCe
Q 045158 3 IIIV--ANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGW 47 (252)
Q Consensus 3 v~v~--~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~ 47 (252)
|.|+ +.|+..-+.+..--...+|.+++...+|-+. -|.|.+.
T Consensus 5 vRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afGq~l---dl~y~nn 48 (94)
T 2jrh_A 5 VRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPL---DLHYMNN 48 (94)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHCSSE---EEEEECS
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCee---eeEEecc
Confidence 4454 4999999999999999999999999999765 4666644
No 351
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=37.55 E-value=74 Score=26.39 Aligned_cols=50 Identities=8% Similarity=0.001 Sum_probs=35.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEc-------CeecCCCCCccc
Q 045158 8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVS-------GWELVDGLDMED 57 (252)
Q Consensus 8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~-------g~~L~d~~~L~~ 57 (252)
.|.+.+|.|++++|++||=..+..+.+.+...---+|. .+.|+|+..+-+
T Consensus 40 D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~d 96 (281)
T 4gmv_A 40 DDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVE 96 (281)
T ss_dssp TSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHH
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHH
Confidence 78899999999999999988888877764332222221 356777665443
No 352
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=37.53 E-value=61 Score=21.98 Aligned_cols=41 Identities=5% Similarity=-0.004 Sum_probs=29.2
Q ss_pred EEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeee-cCCccc
Q 045158 187 PLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIM-RDNCSL 229 (252)
Q Consensus 187 ~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l-~d~~tL 229 (252)
.+-|+.+.|++.+-.-|+.+.++ +..+|.-++..+ ..+.++
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~ 67 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNI 67 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBH
T ss_pred EEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHH
Confidence 35688899999999999988887 566666676433 334443
No 353
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=36.99 E-value=67 Score=23.36 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=31.7
Q ss_pred EEEecCCCcHHHHHHHHhhcCCCCCCceEEe-ecC-eeecCCcccc
Q 045158 187 PLEMQDSSTVNELRHLLLSSKILPREDYIFI-HKQ-RIMRDNCSLR 230 (252)
Q Consensus 187 ~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~-~~g-~~l~d~~tL~ 230 (252)
.+-|+.+.||+++...|..+..+++++-.|. |-+ .....+.++.
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~ 101 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPIS 101 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHH
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHH
Confidence 3568889999999999999999988875544 644 4333444443
No 354
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=36.98 E-value=70 Score=19.89 Aligned_cols=61 Identities=8% Similarity=0.119 Sum_probs=36.3
Q ss_pred CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158 1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI 71 (252)
Q Consensus 1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~ 71 (252)
|++.|.+ +|+. .++..+.|+.++-..+....+ ....-...+|+..+-+ +-+.+++. |.+..
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~-Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQ-VEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSB-EEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCE-EEEEE
Confidence 8888887 6775 567788999999877743221 1111223577765544 33443444 55543
No 355
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=36.16 E-value=34 Score=22.78 Aligned_cols=30 Identities=33% Similarity=0.423 Sum_probs=24.5
Q ss_pred EEEEe-CCeEEEEEecCCCcHHHHHHHHHHH
Q 045158 3 IIIVA-NGHEFVLEVGLQEPVLEIKRKIEQI 32 (252)
Q Consensus 3 v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~ 32 (252)
+++.+ +|.+|.++|..+.-++.-|..|++.
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~erm 69 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERM 69 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 45566 8999999999999988888877654
No 356
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=35.41 E-value=56 Score=23.64 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=31.9
Q ss_pred EEecCCCcHHHHHHHHhhcCCCCCCc-eEEeecCeeecCCcccc
Q 045158 188 LEMQDSSTVNELRHLLLSSKILPRED-YIFIHKQRIMRDNCSLR 230 (252)
Q Consensus 188 l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~~g~~l~d~~tL~ 230 (252)
+-|+.+.||+++...|..+..+++++ .+|.-++.....+.++.
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~ 100 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMG 100 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHH
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHH
Confidence 56888999999999999999998887 45544654444455543
No 357
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=34.82 E-value=63 Score=23.04 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=31.3
Q ss_pred EEecCCCcHHHHHHHHhhcCCCCCCc-eEEeecCeeecCCcccc
Q 045158 188 LEMQDSSTVNELRHLLLSSKILPRED-YIFIHKQRIMRDNCSLR 230 (252)
Q Consensus 188 l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~~g~~l~d~~tL~ 230 (252)
+-|+.+.||+++...|..+..+++++ .+|.-++.....+.++.
T Consensus 51 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~ 94 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMS 94 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHH
Confidence 55888999999999999999998876 45544654444444443
No 358
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=34.74 E-value=55 Score=23.44 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=32.8
Q ss_pred EEecCCCcHHHHHHHHhhcCCCCCCc-eEEeecCeeecCCcccc
Q 045158 188 LEMQDSSTVNELRHLLLSSKILPRED-YIFIHKQRIMRDNCSLR 230 (252)
Q Consensus 188 l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~~g~~l~d~~tL~ 230 (252)
+-|+.+.||+++...|..+..+++++ .+|.-++.....+.++.
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~ 95 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMA 95 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHH
Confidence 56888999999999999999998876 55555776555555543
No 359
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=34.59 E-value=79 Score=26.20 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=42.0
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCc-eEEe-e---c--CeeecCCccccc----cCCCCCCEEEEe
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPRED-YIFI-H---K--QRIMRDNCSLRW----HGVEYGDILYVF 243 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~-~---~--g~~l~d~~tL~~----y~I~~gsti~l~ 243 (252)
..|....+.|++..|+.+|-+.+..+.+.+.+. ..|+ . - .|.|+|...+.+ ........+++.
T Consensus 39 ~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f~ 112 (281)
T 4gmv_A 39 SDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFM 112 (281)
T ss_dssp TTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEEE
T ss_pred cCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEEE
Confidence 357889999999999999999998887765443 3222 1 1 266777665543 334455555553
No 360
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=34.56 E-value=17 Score=23.55 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=13.4
Q ss_pred ccccCCCCCCEEEEecC
Q 045158 229 LRWHGVEYGDILYVFKG 245 (252)
Q Consensus 229 L~~y~I~~gsti~l~~~ 245 (252)
-..+.+++|||+|+|+.
T Consensus 7 ~k~v~LkDGstvyiFKD 23 (74)
T 2k0q_A 7 VKTYDLQDGSKVHVFKD 23 (74)
T ss_dssp EEEEEBTTSCEEEEETT
T ss_pred eeeEecCCCcEEEEEcC
Confidence 34567899999999953
No 361
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=34.49 E-value=1e+02 Score=20.93 Aligned_cols=40 Identities=28% Similarity=0.411 Sum_probs=34.1
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCCCCce-EEEEcCee
Q 045158 9 GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQ-TLAVSGWE 48 (252)
Q Consensus 9 g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q-~L~~~g~~ 48 (252)
...+++.|++..|=.++|+.|+..+++.+..- .+...|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 46799999999999999999999999998774 45667764
No 362
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=34.42 E-value=86 Score=21.27 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=32.4
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHhCCCCccEE-EEECce
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRML-LFFSGI 131 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~-L~~~g~ 131 (252)
+.+.+.|++..|=.++|+.++..+++.+.... +...|+
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 57889999999999999999999999987765 555654
No 363
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=34.35 E-value=51 Score=24.84 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=22.3
Q ss_pred EEEEeCCeEEEEEecCCCcHHHHHHHH
Q 045158 3 IIIVANGHEFVLEVGLQEPVLEIKRKI 29 (252)
Q Consensus 3 v~v~~~g~~~~l~v~~~~tV~~lK~~I 29 (252)
|.++.+|+.+.+++++++|+.++=...
T Consensus 5 i~~~vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 5 LRLTLNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEEETTEEEEEEEETTCBHHHHHHHT
T ss_pred EEEEECCEEEEEecCCcCcHHHHHHHc
Confidence 455669999999999999998876554
No 364
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=33.95 E-value=32 Score=27.46 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=35.8
Q ss_pred cHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCCC
Q 045158 195 TVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGGY 252 (252)
Q Consensus 195 tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~~ 252 (252)
+-++. +.+-+++++-.++.= +.+..|--..+||.++|+.|-+...+-+.|.|
T Consensus 157 ~~eE~-~~lL~~y~i~~~qLP-----~I~~~DPvar~~g~k~G~vvkI~R~s~tag~~ 208 (215)
T 1dzf_A 157 SSDEK-RELLKRYRLKESQLP-----RIQRADPVALYLGLKRGEVVKIIRKSETSGRY 208 (215)
T ss_dssp CHHHH-HHHHHHTTCCGGGSC-----EECTTCHHHHHHTCCTTCEEEEECTTCSSSTT
T ss_pred cHHHH-HHHHHHcCCCHHHCC-----ceeccChhhHHhCCcCCCEEEEEECCCCCCCc
Confidence 34443 344455677655532 24566667788899999999999988888865
No 365
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=33.52 E-value=1.2e+02 Score=21.07 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=34.5
Q ss_pred EEEE--eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCe
Q 045158 3 IIIV--ANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGW 47 (252)
Q Consensus 3 v~v~--~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~ 47 (252)
|.|+ +.|+..-+.+..--...+|.+++...+|-+.+ |.|.+.
T Consensus 32 vRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afGq~ld---l~y~nn 75 (111)
T 2c60_A 32 VRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPLD---LHYMNN 75 (111)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHSSCCE---EEEECS
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee---eEEecc
Confidence 4454 48999999999999999999999999998754 666543
No 366
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=32.53 E-value=1.5e+02 Score=21.89 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=43.0
Q ss_pred EEEEeeCCCccHHHHHHHHHHHhC-CCCccE----EEE-----------------ECceecccccccccccCCCCCCEEE
Q 045158 95 KFNIDVDRTDTVRSLKEKIHIIDG-TPIKRM----LLF-----------------FSGIELDDEFRNLSEYGIREFSEII 152 (252)
Q Consensus 95 ~~~l~v~~~~TV~~lK~~I~~~~g-ip~~~q----~L~-----------------~~g~~L~~d~~~L~~y~i~~~s~i~ 152 (252)
.+.+-...+.|..+|-..|.+..- .+...- +++ +.|..-.||++||.+.+..-|+-|.
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 134 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLD 134 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEE
Confidence 355667889999999888876531 111111 122 3344444688999999999999999
Q ss_pred EEeeec
Q 045158 153 VFLKTM 158 (252)
Q Consensus 153 l~~~~~ 158 (252)
+.+.|.
T Consensus 135 vaI~pP 140 (143)
T 4a6q_A 135 IAITPP 140 (143)
T ss_dssp EEEECG
T ss_pred EEEeCC
Confidence 988653
No 367
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=32.43 E-value=75 Score=22.02 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=33.5
Q ss_pred cceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCC
Q 045158 169 RLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPRE 212 (252)
Q Consensus 169 ~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~ 212 (252)
.-.+.|+. ...|.+.-+.++..-+-++|..++.+.+|-+.+
T Consensus 6 ~~dvRiKf---E~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~ld 46 (103)
T 2cu1_A 6 SGDVRVKF---EHRGEKRILQFPRPVKLEDLRSKAKIAFGQSMD 46 (103)
T ss_dssp SCEEEEEE---EETTEEEEEEEESSCCHHHHHHHHHHHHSSCEE
T ss_pred cCcEEEEE---EecCeEEEEeccCCccHHHHHHHHHHHhCCeee
Confidence 34556654 367999999999999999999999999998655
No 368
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=32.14 E-value=54 Score=23.02 Aligned_cols=44 Identities=14% Similarity=-0.050 Sum_probs=30.7
Q ss_pred EeeCCCccHHHHHHHHHHHhCCCCccEE-EEECceecccccccccc
Q 045158 98 IDVDRTDTVRSLKEKIHIIDGTPIKRML-LFFSGIELDDEFRNLSE 142 (252)
Q Consensus 98 l~v~~~~TV~~lK~~I~~~~gip~~~q~-L~~~g~~L~~d~~~L~~ 142 (252)
+-|..+.||+++..-|..+.++++++-. |+.++.... .+.++++
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~-~~~~m~~ 92 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPP-TSATMGQ 92 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCC-TTSBHHH
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecC-ccChHHH
Confidence 4577789999999999999999887654 444554332 4444544
No 369
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=31.93 E-value=1.2e+02 Score=20.66 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=46.0
Q ss_pred cEEEEEEe--CCc--EEEEeeCCCccHHHHHHHHHH---HhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158 84 KIHIIIKF--PSR--KFNIDVDRTDTVRSLKEKIHI---IDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF 154 (252)
Q Consensus 84 ~~~i~v~~--~g~--~~~l~v~~~~TV~~lK~~I~~---~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~ 154 (252)
+|.|.|-+ +++ .+.+++....||.++-+...- ...+......+..+|+... .++-+++|+.|.+.
T Consensus 12 ~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~------~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 12 QINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK------LTDVLKEGDRIEIY 83 (97)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC------TTCBCCTTCEEEEC
T ss_pred eEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC------CCccCCCCCEEEEE
Confidence 57777773 554 467788889999998877643 2245555667778888773 35568899998875
No 370
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=30.89 E-value=76 Score=23.96 Aligned_cols=30 Identities=7% Similarity=0.008 Sum_probs=25.1
Q ss_pred CcEEEEEEeCCcEEEEeeCCCccHHHHHHH
Q 045158 83 DKIHIIIKFPSRKFNIDVDRTDTVRSLKEK 112 (252)
Q Consensus 83 ~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~ 112 (252)
..|.+.+.++|+.+.+++++..|+.++=..
T Consensus 8 ~~m~i~~~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 8 QLMRISATINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHH
T ss_pred CcceEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 457788888999999999999999886554
No 371
>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=30.71 E-value=32 Score=27.34 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=34.8
Q ss_pred cHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCCC
Q 045158 195 TVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGGY 252 (252)
Q Consensus 195 tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~~ 252 (252)
+-++.++ +-+++++-.++.= +.+..|--..+||.++||.|-+...+-+.|.|
T Consensus 152 s~eE~~~-lL~~y~i~~~qLP-----~I~~~DPv~~~~g~k~GdVvkI~R~s~tag~~ 203 (210)
T 3h0g_E 152 SPDEKKE-LLDRYKLRETQLP-----RIQLADPVARYLGLKRGEVVKIVRRSETSGRY 203 (210)
T ss_dssp CHHHHHH-HHHHTCCCTTTSC-----CCCTTCHHHHHHTCCTTCEEEEECCCCTTSCC
T ss_pred CHHHHHH-HHHHcCCCHHHCC-----cccccCcchhhhCCCCCCEEEEEeCCCCCCCc
Confidence 4444433 4445566544431 23556667778899999999999998888865
No 372
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=30.34 E-value=1.3e+02 Score=21.40 Aligned_cols=60 Identities=15% Similarity=0.041 Sum_probs=38.3
Q ss_pred CCcEEEEEE-eCC------cEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE-ECceecccccccccc
Q 045158 82 HDKIHIIIK-FPS------RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF-FSGIELDDEFRNLSE 142 (252)
Q Consensus 82 ~~~~~i~v~-~~g------~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~-~~g~~L~~d~~~L~~ 142 (252)
+..+.|.|. .++ +.-.+-|..+.||+++...|..+..+++++-..+ .++.... .+.++++
T Consensus 28 P~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~-~~~~m~~ 95 (118)
T 3rui_B 28 KNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPP-TAALMSA 95 (118)
T ss_dssp SSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCC-TTSBHHH
T ss_pred CCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCC-ccchHHH
Confidence 445666666 332 1123458889999999999999999987765433 4554332 4444443
No 373
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=29.55 E-value=87 Score=28.39 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=38.7
Q ss_pred CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCC--ccEEEEE
Q 045158 82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPI--KRMLLFF 128 (252)
Q Consensus 82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~--~~q~L~~ 128 (252)
...+.+.|.+ +|....+.++...|+.+|-..|.++.|+.. +..-|++
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 4467788885 788899999999999999999999999974 3455665
No 374
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=28.90 E-value=1.2e+02 Score=21.49 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=37.7
Q ss_pred CCcEEEEEE-eCC------cEEEEeeCCCccHHHHHHHHHHHhCCCCccEE-EEECceecccccccccc
Q 045158 82 HDKIHIIIK-FPS------RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRML-LFFSGIELDDEFRNLSE 142 (252)
Q Consensus 82 ~~~~~i~v~-~~g------~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~-L~~~g~~L~~d~~~L~~ 142 (252)
+..+.|.|. .++ +.-.+-|..+.||+++..-|..+.++++++-. |+.++.... .+.++++
T Consensus 26 P~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~-~~~~m~~ 93 (117)
T 1eo6_A 26 PDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQ-SSLTMGQ 93 (117)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCC-TTSBHHH
T ss_pred CCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecC-ccchHHH
Confidence 345566666 322 11234577789999999999999999887654 434554332 4445544
No 375
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=28.63 E-value=90 Score=22.26 Aligned_cols=44 Identities=16% Similarity=0.093 Sum_probs=33.0
Q ss_pred EEecCCCcHHHHHHHHHHHhCCCCCceEEEE-cCeecCCCCCccc
Q 045158 14 LEVGLQEPVLEIKRKIEQIFNIPATSQTLAV-SGWELVDGLDMED 57 (252)
Q Consensus 14 l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~-~g~~L~d~~~L~~ 57 (252)
.-|..+.||+++...|.++.++++++--++| ++....-+.++++
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 96 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMAD 96 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHH
Confidence 4588999999999999999999987744444 6665555556553
No 376
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=28.25 E-value=1.4e+02 Score=20.33 Aligned_cols=41 Identities=10% Similarity=0.007 Sum_probs=32.8
Q ss_pred EEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEE
Q 045158 3 IIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAV 44 (252)
Q Consensus 3 v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~ 44 (252)
|.+.+ +++.-.++|.|+.|+.+--.|+.+..|+.++ +.-+|
T Consensus 20 irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe-~C~Vy 61 (95)
T 2l05_A 20 VRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPE-CCAVY 61 (95)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGG-GEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHH-HcEEE
Confidence 44555 6777779999999999999999999999775 44444
No 377
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=27.97 E-value=32 Score=25.86 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=25.4
Q ss_pred CEEEEEeCCeEEEEEecCCC---cHHHHHHHH
Q 045158 1 MRIIIVANGHEFVLEVGLQE---PVLEIKRKI 29 (252)
Q Consensus 1 M~v~v~~~g~~~~l~v~~~~---tV~~lK~~I 29 (252)
|+|.+..++.+++.++..+. |..+|.+++
T Consensus 30 ~~I~i~~~~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 30 MRLRIRFESAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp CCEEEEETTEEEEECCCTTSCHHHHHHHHHTC
T ss_pred eEEEEEECCEEEEEEEcCCCCHHHHHHHHHhC
Confidence 78888899999999999999 999888763
No 378
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=27.93 E-value=99 Score=20.76 Aligned_cols=41 Identities=12% Similarity=0.065 Sum_probs=32.3
Q ss_pred EEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEE
Q 045158 3 IIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAV 44 (252)
Q Consensus 3 v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~ 44 (252)
|.+.+ +++.-.++|.|+.|+.+--.|+.+..++.++ +.-+|
T Consensus 10 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe-~C~Vy 51 (86)
T 1wxm_A 10 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQD-CCVVY 51 (86)
T ss_dssp EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSS-SEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHH-HeEEE
Confidence 34455 6666779999999999999999999999875 44444
No 379
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=27.57 E-value=1.3e+02 Score=21.70 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=38.7
Q ss_pred CCcEEEEEE-eCC------cEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE-Cceecccccccccc
Q 045158 82 HDKIHIIIK-FPS------RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF-SGIELDDEFRNLSE 142 (252)
Q Consensus 82 ~~~~~i~v~-~~g------~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~-~g~~L~~d~~~L~~ 142 (252)
+..+.|.|. .++ ..-.+-|..+.||+++...|..+..+++++-..+| ++. +...+.++++
T Consensus 34 P~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~-lPs~s~~m~~ 101 (125)
T 3m95_A 34 PDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNV-IPPTSATMGS 101 (125)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTB-CCCTTSBHHH
T ss_pred CCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCc-cCCccchHHH
Confidence 445666666 332 12234588899999999999999999888754444 554 3224445443
No 380
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=27.50 E-value=85 Score=28.44 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=34.8
Q ss_pred EEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCC--CceEEEE
Q 045158 2 RIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPA--TSQTLAV 44 (252)
Q Consensus 2 ~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~--~~q~L~~ 44 (252)
.+.|.+ +|....+.+++..|+.+|-..|+++.|+.. +..-|++
T Consensus 218 ~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 218 TSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred ceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 455655 889999999999999999999999999975 2344544
No 381
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=27.37 E-value=1.7e+02 Score=20.82 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=24.8
Q ss_pred EEecCCCcHHHHHHHHhhcCCCC--------CCceEEe
Q 045158 188 LEMQDSSTVNELRHLLLSSKILP--------REDYIFI 217 (252)
Q Consensus 188 l~v~~~~tV~~Lk~~i~~~~gip--------~~~~~l~ 217 (252)
+.|....|+.+|-.+.-.+.|.+ +++|+|+
T Consensus 24 v~vt~~STAqdvI~eaL~kag~~~~~~~~~~~~dYvLv 61 (117)
T 2c5l_C 24 IKAPRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLL 61 (117)
T ss_dssp EEEETTCBHHHHHHHHHHHTTTSHHHHHSCCGGGEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHcCCccccccCCCchHeEEE
Confidence 67888999999999999998876 4567765
No 382
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=27.22 E-value=84 Score=23.81 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=23.2
Q ss_pred EEEEEEeCCcEEEEeeCCCccHHHHHHH
Q 045158 85 IHIIIKFPSRKFNIDVDRTDTVRSLKEK 112 (252)
Q Consensus 85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~ 112 (252)
|.|.+.++|+.+.+++++..|+.++=+.
T Consensus 4 ~~i~~~vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 4 AHIELTINGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHH
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHH
Confidence 5677777899999999999999986554
No 383
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=27.05 E-value=93 Score=20.78 Aligned_cols=32 Identities=9% Similarity=0.185 Sum_probs=28.7
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHhCCCCccEE
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRML 125 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~ 125 (252)
+.+.+.|++..|=.++|+.++..+++.+..-.
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VN 54 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVN 54 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEE
Confidence 57899999999999999999999999877654
No 384
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=26.61 E-value=1.4e+02 Score=24.23 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=31.4
Q ss_pred cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeec-------CeeecCCccc
Q 045158 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHK-------QRIMRDNCSL 229 (252)
Q Consensus 181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~-------g~~l~d~~tL 229 (252)
..|...++.|++..|+.+|-..+.++.+.+.+...-++. .|.|+|...+
T Consensus 16 ~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V 71 (256)
T 3hk0_A 16 EDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELV 71 (256)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBH
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhH
Confidence 457889999999999999999998887765444333221 2666666544
No 385
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=26.55 E-value=48 Score=19.91 Aligned_cols=19 Identities=37% Similarity=0.317 Sum_probs=15.1
Q ss_pred CCcHHHHHHHHhhcCCCCCC
Q 045158 193 SSTVNELRHLLLSSKILPRE 212 (252)
Q Consensus 193 ~~tV~~Lk~~i~~~~gip~~ 212 (252)
..||.+||+.+..+ |+|..
T Consensus 7 kltV~eLK~~Lk~R-GL~~~ 25 (51)
T 1h1j_S 7 SLTVVQLKDLLTKR-NLSVG 25 (51)
T ss_dssp GCCHHHHHHHHHHT-TCCCC
T ss_pred HCcHHHHHHHHHHc-CCCCC
Confidence 46999999988776 67764
No 386
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=25.66 E-value=45 Score=22.56 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=23.8
Q ss_pred EEEEe-CCeEEEEEecCCCcHHHHHHHHHHH
Q 045158 3 IIIVA-NGHEFVLEVGLQEPVLEIKRKIEQI 32 (252)
Q Consensus 3 v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~ 32 (252)
+++.+ +|.+|.++|..+.-++.-|..|++.
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 35566 8999999999999888777777654
No 387
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=24.52 E-value=1e+02 Score=23.26 Aligned_cols=28 Identities=7% Similarity=0.064 Sum_probs=22.8
Q ss_pred EEEEEEeCCcEEEEeeCCCccHHHHHHH
Q 045158 85 IHIIIKFPSRKFNIDVDRTDTVRSLKEK 112 (252)
Q Consensus 85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~ 112 (252)
+.|.+.++|+.+.+++++..|+.++=+.
T Consensus 4 ~~i~~~vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 4 KIITVNVNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHH
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 4566677899999999999999986554
No 388
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=24.51 E-value=2.3e+02 Score=21.32 Aligned_cols=55 Identities=13% Similarity=0.118 Sum_probs=36.0
Q ss_pred EeeCCCccHHHHHHHHHHHhC-CC---------CccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158 98 IDVDRTDTVRSLKEKIHIIDG-TP---------IKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL 155 (252)
Q Consensus 98 l~v~~~~TV~~lK~~I~~~~g-ip---------~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~ 155 (252)
++++. .||.+|.+.+..... +. .....+..||.... . ..-.++-+++|+.|.++-
T Consensus 18 ~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~-~-~~~~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 18 LELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVR-Y-LQGLSTPLSPGATLDLFP 82 (168)
T ss_dssp EECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGG-G-TTGGGCBCCTTCEEEEEC
T ss_pred EEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECC-C-cCCCccCCCCCCEEEEEC
Confidence 34555 899999999977631 10 12345667888774 3 233466799999988763
No 389
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=24.35 E-value=1.5e+02 Score=20.00 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=33.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhCCCCCce-EEEEcCee
Q 045158 10 HEFVLEVGLQEPVLEIKRKIEQIFNIPATSQ-TLAVSGWE 48 (252)
Q Consensus 10 ~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q-~L~~~g~~ 48 (252)
..+++.|++..|=.++|+.|+..+++.+..- .+...|+.
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKK 61 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCce
Confidence 6789999999999999999999999998764 45566653
No 390
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=24.30 E-value=1.2e+02 Score=24.79 Aligned_cols=50 Identities=12% Similarity=-0.032 Sum_probs=32.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEc-------CeecCCCCCccc
Q 045158 8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVS-------GWELVDGLDMED 57 (252)
Q Consensus 8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~-------g~~L~d~~~L~~ 57 (252)
.|...+|.|++++|++||=..+..+.++....--.+|. .+.|+|+..+-+
T Consensus 17 d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~e 73 (256)
T 3hk0_A 17 DGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQ 73 (256)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHH
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHH
Confidence 78899999999999999998888776654332222222 467777765543
No 391
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=24.24 E-value=58 Score=19.44 Aligned_cols=19 Identities=37% Similarity=0.281 Sum_probs=15.1
Q ss_pred CCcHHHHHHHHhhcCCCCCC
Q 045158 193 SSTVNELRHLLLSSKILPRE 212 (252)
Q Consensus 193 ~~tV~~Lk~~i~~~~gip~~ 212 (252)
..||.+||+.+..+ |+|..
T Consensus 12 klkV~eLK~eLk~R-gL~~~ 30 (50)
T 1zrj_A 12 RLKVNELREELQRR-GLDTR 30 (50)
T ss_dssp GSCHHHHHHHHHHT-TCCCC
T ss_pred HCcHHHHHHHHHHc-CCCCC
Confidence 46999999998876 67654
No 392
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=24.02 E-value=1e+02 Score=23.19 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=22.8
Q ss_pred EEEEEEeCCcEEEEeeCCCccHHHHHH
Q 045158 85 IHIIIKFPSRKFNIDVDRTDTVRSLKE 111 (252)
Q Consensus 85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~ 111 (252)
|.|.+.++|+.+.+++++..|+.++=+
T Consensus 4 ~~i~~~vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLNLNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEEETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEEECCEEEEEecCCCCCHHHHHH
Confidence 667777889999999999999988644
No 393
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=23.87 E-value=1.1e+02 Score=20.46 Aligned_cols=32 Identities=9% Similarity=0.215 Sum_probs=28.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCCCCce
Q 045158 9 GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQ 40 (252)
Q Consensus 9 g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q 40 (252)
...+++.|++..|=.++|+.++..+++.+..-
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~V 53 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQV 53 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEE
Confidence 46789999999999999999999999987654
No 394
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.71 E-value=1.7e+02 Score=19.74 Aligned_cols=49 Identities=12% Similarity=0.046 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHHHhCCCCccEEEEE--CceecccccccccccCCCCCCEEEEEee
Q 045158 104 DTVRSLKEKIHIIDGTPIKRMLLFF--SGIELDDEFRNLSEYGIREFSEIIVFLK 156 (252)
Q Consensus 104 ~TV~~lK~~I~~~~gip~~~q~L~~--~g~~L~~d~~~L~~y~i~~~s~i~l~~~ 156 (252)
.+..+|+.+..++++++...-+|.. .|.+++ |+.- +.--+..|+.+++.
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~Vd-dEey---F~tLp~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVD-TEEF---FQTLGDNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCC-CHHH---HTTSCSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEe-chhh---hhhCCCCCEEEEEc
Confidence 4899999999999999866666665 688885 5432 22234556666554
No 395
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=23.53 E-value=1.2e+02 Score=20.51 Aligned_cols=44 Identities=9% Similarity=0.042 Sum_probs=31.8
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCceEEEE-cCeec-CCCCCcc
Q 045158 13 VLEVGLQEPVLEIKRKIEQIFNIPATSQTLAV-SGWEL-VDGLDME 56 (252)
Q Consensus 13 ~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~-~g~~L-~d~~~L~ 56 (252)
..-|+.+.|++++...|.++..+++++--.+| ++..+ ..+.+++
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~ 68 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVG 68 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHH
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHH
Confidence 35688999999999999999999887655555 44332 3344544
No 396
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=22.69 E-value=1.1e+02 Score=20.78 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=34.0
Q ss_pred EEe-cCCCcHHHHHHHHhhcCCCCCCceEEeecC-eeecCCccccccCCCCCCEEEEecC
Q 045158 188 LEM-QDSSTVNELRHLLLSSKILPREDYIFIHKQ-RIMRDNCSLRWHGVEYGDILYVFKG 245 (252)
Q Consensus 188 l~v-~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g-~~l~d~~tL~~y~I~~gsti~l~~~ 245 (252)
+.+ ....||+++-.+|....+-.. .+.++++- ..-+..+-=.+|-+++||.|.|+..
T Consensus 29 viL~~~GsTv~Dfa~~IH~di~~~f-kyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 29 VVLPYSRTTVEDFCMKIHKNLIKEF-KYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 87 (93)
T ss_dssp EEEETTSCCHHHHHHHHCTTCTTTE-EEEEEBSTTSSSSSEEECSSCCCCSSEEECEEEC
T ss_pred EEEecCCCCHHHHHHHHHHHHHhhc-cEEEEecccccCCCEECCCCcEecCCCEEEEEeC
Confidence 555 667899999999987654311 23333221 0011222234567789999998865
No 397
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=22.46 E-value=65 Score=22.93 Aligned_cols=31 Identities=10% Similarity=-0.098 Sum_probs=26.9
Q ss_pred ceEEeecCeeecCCccccccCCCCCC-EEEEe
Q 045158 213 DYIFIHKQRIMRDNCSLRWHGVEYGD-ILYVF 243 (252)
Q Consensus 213 ~~~l~~~g~~l~d~~tL~~y~I~~gs-ti~l~ 243 (252)
-.+|.+.|.+.+|++.=+.|.++.|+ +|.|.
T Consensus 62 yLRL~lP~~vved~~~~A~YD~d~g~~~v~lp 93 (115)
T 3eud_A 62 YLRLRFPHELIDDERSTAQYDSKDECINVKVA 93 (115)
T ss_dssp EEEEECSSCEECSTTCEEEEETTTTEEEEEEE
T ss_pred EEEEecCcceecCCCcceEEeCCCcEEEEEEc
Confidence 56899999999999999999999988 66664
No 398
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.99 E-value=1.7e+02 Score=19.45 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=28.7
Q ss_pred cEEEEeeCCCccHHHHHHHHHHHhCCCCccEE
Q 045158 94 RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRML 125 (252)
Q Consensus 94 ~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~ 125 (252)
+.+.+.|++..|=.++|+.++..+++.+....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VN 55 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVN 55 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEE
Confidence 57889999999999999999999999877654
No 399
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=20.97 E-value=1.4e+02 Score=27.79 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=38.3
Q ss_pred CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCC-ccEEEEE
Q 045158 82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPI-KRMLLFF 128 (252)
Q Consensus 82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~-~~q~L~~ 128 (252)
...+.+.|.+ +|....+.++...|+.++-..|.++.|+.. +..-|.+
T Consensus 261 ~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 4567888885 788899999999999999999999999753 3455655
No 400
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.89 E-value=65 Score=18.01 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=11.2
Q ss_pred CCcHHHHHHHHHHHh
Q 045158 19 QEPVLEIKRKIEQIF 33 (252)
Q Consensus 19 ~~tV~~lK~~I~~~~ 33 (252)
+.||.+||..|++.+
T Consensus 2 sntvkelknyiqele 16 (46)
T 3he4_B 2 SNTVKELKNYIQELE 16 (46)
T ss_dssp -CCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH
Confidence 568899998888654
No 401
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=20.26 E-value=1e+02 Score=20.37 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=20.8
Q ss_pred EEEEEeCCeEEEEEecCCCcHHHHH
Q 045158 2 RIIIVANGHEFVLEVGLQEPVLEIK 26 (252)
Q Consensus 2 ~v~v~~~g~~~~l~v~~~~tV~~lK 26 (252)
+|+|..+|+..++++.+++|+.+.=
T Consensus 2 ~v~i~~~g~~~~~~~~~g~tll~a~ 26 (93)
T 1l5p_A 2 TITAVKGGVKKQLKFEDDQTLFTVL 26 (93)
T ss_dssp EEEEEETTEEEEEECCTTEEHHHHH
T ss_pred eEEEEeCCcEEEEEECCCChHHHHH
Confidence 4677779999999999999998763
No 402
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=20.10 E-value=2.2e+02 Score=19.48 Aligned_cols=42 Identities=10% Similarity=0.006 Sum_probs=33.0
Q ss_pred EEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEc
Q 045158 3 IIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVS 45 (252)
Q Consensus 3 v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~ 45 (252)
|.+.+ +++.-.++|.|+.|+.+-=.|+.+..|+.++ +.-+|.
T Consensus 16 irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe-~C~Vy~ 58 (96)
T 3ny5_A 16 VRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPE-CCAVYR 58 (96)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGG-GEEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChH-HeEEEE
Confidence 34455 6667779999999999999999999999775 455553
Done!