Query 045160
Match_columns 166
No_of_seqs 216 out of 1212
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 18:23:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.9 7.6E-22 2.6E-26 137.1 7.2 65 84-148 6-70 (83)
2 1x2n_A Homeobox protein pknox1 99.8 3.9E-21 1.3E-25 130.0 7.5 66 84-149 6-71 (73)
3 1du6_A PBX1, homeobox protein 99.8 1.3E-20 4.4E-25 124.3 7.5 62 85-146 3-64 (64)
4 3k2a_A Homeobox protein MEIS2; 99.8 9.9E-21 3.4E-25 126.5 6.6 60 89-148 2-61 (67)
5 1puf_B PRE-B-cell leukemia tra 99.8 3.4E-20 1.1E-24 125.4 7.6 64 86-149 2-65 (73)
6 1k61_A Mating-type protein alp 99.8 4.4E-20 1.5E-24 120.2 7.3 59 88-146 1-59 (60)
7 1le8_B Mating-type protein alp 99.8 8.4E-20 2.9E-24 126.6 8.9 62 86-147 3-64 (83)
8 1mnm_C Protein (MAT alpha-2 tr 99.8 1.1E-19 3.6E-24 126.9 8.0 61 84-144 26-86 (87)
9 2lk2_A Homeobox protein TGIF1; 99.8 3.1E-20 1.1E-24 130.7 4.3 59 89-147 9-67 (89)
10 1b72_B Protein (PBX1); homeodo 99.8 9.8E-20 3.4E-24 126.8 6.5 64 86-149 2-65 (87)
11 1bw5_A ISL-1HD, insulin gene e 99.8 1.8E-18 6.1E-23 114.7 8.6 63 84-149 2-64 (66)
12 1akh_A Protein (mating-type pr 99.8 1.1E-18 3.9E-23 113.7 6.7 58 84-144 4-61 (61)
13 2ecc_A Homeobox and leucine zi 99.7 2.6E-18 8.9E-23 117.7 7.7 58 87-147 5-62 (76)
14 2hdd_A Protein (engrailed home 99.7 2.3E-18 7.7E-23 112.5 6.7 59 84-145 2-60 (61)
15 2da2_A Alpha-fetoprotein enhan 99.7 4.5E-18 1.5E-22 113.8 8.2 63 84-149 6-68 (70)
16 2k40_A Homeobox expressed in E 99.7 2.8E-18 9.5E-23 114.1 6.8 64 86-152 2-65 (67)
17 2cra_A Homeobox protein HOX-B1 99.7 5.8E-18 2E-22 113.5 8.4 61 84-147 6-66 (70)
18 2dmu_A Homeobox protein goosec 99.7 6.4E-18 2.2E-22 113.2 7.3 61 84-147 6-66 (70)
19 1ig7_A Homeotic protein MSX-1; 99.7 5E-18 1.7E-22 109.6 6.5 57 86-145 1-57 (58)
20 2h1k_A IPF-1, pancreatic and d 99.7 4.8E-18 1.7E-22 111.7 6.4 60 84-146 2-61 (63)
21 2djn_A Homeobox protein DLX-5; 99.7 7.8E-18 2.7E-22 112.9 7.3 61 84-147 6-66 (70)
22 2vi6_A Homeobox protein nanog; 99.7 7.3E-18 2.5E-22 110.4 7.0 59 84-145 2-60 (62)
23 2da1_A Alpha-fetoprotein enhan 99.7 6.3E-18 2.1E-22 113.2 6.7 62 84-148 6-67 (70)
24 2l7z_A Homeobox protein HOX-A1 99.7 1.1E-17 3.9E-22 113.1 7.9 63 84-149 6-68 (73)
25 2dmt_A Homeobox protein BARH-l 99.7 1.5E-17 5.1E-22 114.3 8.6 61 84-147 16-76 (80)
26 3rkq_A Homeobox protein NKX-2. 99.7 8.8E-18 3E-22 108.0 6.9 57 85-144 2-58 (58)
27 2dms_A Homeobox protein OTX2; 99.7 1E-17 3.6E-22 115.0 7.7 63 84-149 6-68 (80)
28 2da3_A Alpha-fetoprotein enhan 99.7 6.9E-18 2.4E-22 115.5 6.7 61 84-147 16-76 (80)
29 1wh5_A ZF-HD homeobox family p 99.7 1E-17 3.4E-22 115.6 7.5 63 84-146 16-79 (80)
30 1jgg_A Segmentation protein EV 99.7 8E-18 2.7E-22 109.5 6.4 57 86-145 2-58 (60)
31 2e1o_A Homeobox protein PRH; D 99.7 8.9E-18 3E-22 112.6 6.6 61 84-147 6-66 (70)
32 2dmq_A LIM/homeobox protein LH 99.7 8.3E-18 2.8E-22 115.3 6.1 61 84-147 6-66 (80)
33 1ftt_A TTF-1 HD, thyroid trans 99.7 1.5E-17 5.2E-22 110.9 7.0 62 85-149 2-63 (68)
34 1fjl_A Paired protein; DNA-bin 99.7 1.4E-17 4.6E-22 114.7 6.7 60 84-146 17-76 (81)
35 2kt0_A Nanog, homeobox protein 99.7 3.6E-17 1.2E-21 113.1 8.4 61 84-147 21-81 (84)
36 2m0c_A Homeobox protein arista 99.7 3.1E-17 1.1E-21 110.8 8.0 63 83-148 7-69 (75)
37 2da4_A Hypothetical protein DK 99.7 3.9E-18 1.3E-22 117.1 3.5 64 84-147 7-71 (80)
38 1nk2_P Homeobox protein VND; h 99.7 1.8E-17 6.2E-22 113.1 6.5 60 84-146 8-67 (77)
39 1ahd_P Antennapedia protein mu 99.7 1.3E-17 4.3E-22 111.4 5.6 60 85-147 2-61 (68)
40 1zq3_P PRD-4, homeotic bicoid 99.7 1.5E-17 5E-22 111.0 5.9 60 85-147 2-61 (68)
41 1puf_A HOX-1.7, homeobox prote 99.7 2.8E-17 9.5E-22 112.1 6.9 61 83-146 11-71 (77)
42 3a02_A Homeobox protein arista 99.7 3.6E-17 1.2E-21 106.4 6.7 56 88-146 2-57 (60)
43 1yz8_P Pituitary homeobox 2; D 99.7 6.7E-18 2.3E-22 112.6 3.2 62 84-148 2-63 (68)
44 2dn0_A Zinc fingers and homeob 99.7 5.8E-17 2E-21 110.3 7.9 61 85-148 8-68 (76)
45 3a01_A Homeodomain-containing 99.7 2.2E-17 7.4E-22 116.7 6.0 66 81-149 13-78 (93)
46 2cue_A Paired box protein PAX6 99.7 2.4E-17 8.1E-22 113.3 5.8 61 84-147 6-66 (80)
47 1b8i_A Ultrabithorax, protein 99.7 6.5E-17 2.2E-21 111.5 7.1 61 84-147 19-79 (81)
48 3a03_A T-cell leukemia homeobo 99.7 6.4E-17 2.2E-21 104.0 5.7 53 90-145 2-54 (56)
49 2hi3_A Homeodomain-only protei 99.7 7.8E-17 2.7E-21 108.9 6.3 59 86-147 3-62 (73)
50 2ly9_A Zinc fingers and homeob 99.7 2.5E-16 8.6E-21 106.4 8.4 61 85-148 6-66 (74)
51 1wh7_A ZF-HD homeobox family p 99.7 1E-16 3.6E-21 110.6 6.0 62 84-146 16-79 (80)
52 1uhs_A HOP, homeodomain only p 99.7 1.2E-16 4.1E-21 107.6 6.2 59 86-147 2-61 (72)
53 2r5y_A Homeotic protein sex co 99.7 9.9E-17 3.4E-21 112.0 5.9 60 84-146 27-86 (88)
54 2da5_A Zinc fingers and homeob 99.7 2.4E-16 8.2E-21 107.1 7.1 59 86-147 8-66 (75)
55 2ecb_A Zinc fingers and homeob 99.6 4E-16 1.4E-20 109.8 8.2 59 88-149 14-72 (89)
56 3d1n_I POU domain, class 6, tr 99.6 2.9E-16 1E-20 119.7 7.7 60 83-145 91-150 (151)
57 2d5v_A Hepatocyte nuclear fact 99.6 3.1E-16 1.1E-20 120.8 7.6 62 83-147 95-156 (164)
58 2cuf_A FLJ21616 protein; homeo 99.6 2E-16 6.7E-21 112.0 5.9 61 84-147 6-81 (95)
59 1b72_A Protein (homeobox prote 99.6 1.8E-16 6.1E-21 112.6 5.6 60 84-146 33-92 (97)
60 3nar_A ZHX1, zinc fingers and 99.6 4.4E-16 1.5E-20 110.4 7.3 60 85-147 25-84 (96)
61 2dmp_A Zinc fingers and homeob 99.6 1.2E-15 4.2E-20 106.9 8.7 58 87-147 15-72 (89)
62 3nau_A Zinc fingers and homeob 99.6 3.7E-16 1.3E-20 104.0 5.1 51 92-145 11-61 (66)
63 1au7_A Protein PIT-1, GHF-1; c 99.6 1.2E-15 4E-20 116.0 7.7 61 83-146 85-145 (146)
64 1e3o_C Octamer-binding transcr 99.6 1.2E-15 4E-20 117.6 7.5 60 84-146 100-159 (160)
65 2xsd_C POU domain, class 3, tr 99.6 1.1E-15 3.6E-20 118.4 7.1 63 83-148 97-159 (164)
66 2e19_A Transcription factor 8; 99.6 1.5E-15 5.2E-20 100.5 6.8 55 88-145 6-60 (64)
67 2cqx_A LAG1 longevity assuranc 99.6 1.3E-15 4.3E-20 103.0 5.2 59 86-147 9-68 (72)
68 1lfb_A Liver transcription fac 99.6 2.3E-15 8E-20 107.7 6.5 62 83-147 7-89 (99)
69 1wi3_A DNA-binding protein SAT 99.6 6.7E-15 2.3E-19 98.4 8.0 62 84-147 6-67 (71)
70 2l9r_A Homeobox protein NKX-3. 99.6 5.5E-15 1.9E-19 99.3 7.7 55 90-147 9-63 (69)
71 2da6_A Hepatocyte nuclear fact 99.6 4.6E-15 1.6E-19 106.7 6.0 61 84-147 5-86 (102)
72 3l1p_A POU domain, class 5, tr 99.5 2.6E-15 8.8E-20 115.1 4.8 60 84-146 95-154 (155)
73 1x2m_A LAG1 longevity assuranc 99.5 1.6E-14 5.5E-19 95.7 5.6 50 95-146 10-59 (64)
74 2da7_A Zinc finger homeobox pr 99.4 3.4E-13 1.2E-17 90.5 6.2 46 94-142 14-59 (71)
75 2h8r_A Hepatocyte nuclear fact 99.4 3.7E-13 1.3E-17 108.5 6.8 57 84-143 141-218 (221)
76 1ic8_A Hepatocyte nuclear fact 99.4 1.4E-13 4.9E-18 109.2 4.2 60 83-145 113-193 (194)
77 1mh3_A Maltose binding-A1 home 99.3 1E-12 3.6E-17 111.4 6.1 56 86-144 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.1 2.3E-07 7.7E-12 54.8 -0.5 36 130-165 1-36 (37)
79 2ys9_A Homeobox and leucine zi 96.7 0.0012 4E-08 43.9 3.2 46 91-139 12-57 (70)
80 1hlv_A CENP-B, major centromer 90.8 0.78 2.7E-05 32.2 6.7 50 87-142 3-52 (131)
81 3hug_A RNA polymerase sigma fa 90.4 0.21 7.3E-06 33.4 3.2 49 91-147 37-85 (92)
82 2glo_A Brinker CG9653-PA; prot 88.2 0.97 3.3E-05 27.7 4.9 48 89-140 3-50 (59)
83 2elh_A CG11849-PA, LD40883P; s 86.3 1.2 4.2E-05 29.4 4.8 49 85-141 16-64 (87)
84 2o8x_A Probable RNA polymerase 83.2 0.69 2.4E-05 28.6 2.3 51 90-148 14-64 (70)
85 1tty_A Sigma-A, RNA polymerase 83.0 1.1 3.7E-05 29.6 3.3 55 91-149 18-72 (87)
86 1tc3_C Protein (TC3 transposas 82.5 1.3 4.5E-05 24.8 3.3 42 90-139 4-45 (51)
87 2p7v_B Sigma-70, RNA polymeras 82.3 0.97 3.3E-05 28.3 2.8 54 91-148 5-58 (68)
88 1ku3_A Sigma factor SIGA; heli 80.5 1.1 3.9E-05 28.3 2.6 54 90-147 9-63 (73)
89 3c57_A Two component transcrip 79.2 3.8 0.00013 27.4 5.1 50 90-148 26-75 (95)
90 2k27_A Paired box protein PAX- 77.7 11 0.00039 26.9 7.7 51 89-142 81-138 (159)
91 3mzy_A RNA polymerase sigma-H 77.6 1.1 3.8E-05 31.7 2.0 48 91-147 109-156 (164)
92 1x3u_A Transcriptional regulat 74.5 3.1 0.00011 26.2 3.5 48 91-147 16-63 (79)
93 2rnj_A Response regulator prot 74.1 8.4 0.00029 25.2 5.7 49 90-147 28-76 (91)
94 1s7o_A Hypothetical UPF0122 pr 73.6 2 6.8E-05 30.2 2.5 48 91-146 22-69 (113)
95 1p4w_A RCSB; solution structur 73.1 7.2 0.00025 26.5 5.3 50 89-147 32-81 (99)
96 2jn6_A Protein CGL2762, transp 72.9 5.8 0.0002 26.2 4.7 46 89-141 3-49 (97)
97 1je8_A Nitrate/nitrite respons 71.3 4.1 0.00014 26.4 3.5 49 90-147 20-68 (82)
98 1iuf_A Centromere ABP1 protein 70.4 6.6 0.00023 28.3 4.8 50 86-141 6-62 (144)
99 1hlv_A CENP-B, major centromer 70.3 7.8 0.00027 26.8 5.0 59 85-143 66-130 (131)
100 2rn7_A IS629 ORFA; helix, all 70.2 11 0.00039 25.2 5.8 52 89-141 4-56 (108)
101 1fse_A GERE; helix-turn-helix 69.3 7.8 0.00027 23.8 4.4 51 88-147 8-58 (74)
102 1rp3_A RNA polymerase sigma fa 68.9 2.1 7.3E-05 32.2 1.9 49 90-146 186-234 (239)
103 1or7_A Sigma-24, RNA polymeras 68.8 2.1 7.2E-05 31.3 1.8 49 91-147 140-188 (194)
104 2lfw_A PHYR sigma-like domain; 66.4 4 0.00014 29.4 2.9 52 90-149 92-143 (157)
105 1xsv_A Hypothetical UPF0122 pr 65.7 2.6 9E-05 29.4 1.7 48 91-146 25-72 (113)
106 2q1z_A RPOE, ECF SIGE; ECF sig 65.1 1.9 6.4E-05 31.4 0.9 48 91-146 135-182 (184)
107 3bd1_A CRO protein; transcript 64.4 4.1 0.00014 25.8 2.3 23 118-140 14-36 (79)
108 2xi8_A Putative transcription 63.3 3.7 0.00013 24.4 1.9 23 118-140 17-39 (66)
109 1jko_C HIN recombinase, DNA-in 63.2 4 0.00014 23.1 1.9 40 91-138 5-44 (52)
110 3lsg_A Two-component response 62.6 17 0.00059 23.9 5.4 41 96-139 3-43 (103)
111 2r1j_L Repressor protein C2; p 62.3 4 0.00014 24.4 1.9 22 118-139 21-42 (68)
112 2jpc_A SSRB; DNA binding prote 61.9 7.6 0.00026 23.1 3.2 29 119-147 17-45 (61)
113 1zug_A Phage 434 CRO protein; 61.4 4.1 0.00014 24.7 1.8 24 118-141 19-42 (71)
114 3t72_q RNA polymerase sigma fa 59.5 6.6 0.00023 26.9 2.8 55 90-148 18-72 (99)
115 3bs3_A Putative DNA-binding pr 58.0 5.3 0.00018 24.6 1.9 23 118-140 26-48 (76)
116 1adr_A P22 C2 repressor; trans 57.7 5.2 0.00018 24.5 1.9 23 118-140 21-43 (76)
117 1l0o_C Sigma factor; bergerat 57.4 2.2 7.5E-05 32.1 0.0 47 90-144 197-243 (243)
118 1r69_A Repressor protein CI; g 56.7 5.6 0.00019 23.9 1.9 24 118-141 17-40 (69)
119 2b5a_A C.BCLI; helix-turn-heli 56.7 5.6 0.00019 24.5 1.9 23 118-140 26-48 (77)
120 2wiu_B HTH-type transcriptiona 55.8 8.1 0.00028 24.5 2.6 23 118-140 28-50 (88)
121 3b7h_A Prophage LP1 protein 11 55.2 6.1 0.00021 24.4 1.9 23 118-140 23-45 (78)
122 3omt_A Uncharacterized protein 55.1 6 0.0002 24.4 1.8 22 118-139 24-45 (73)
123 3clo_A Transcriptional regulat 54.3 14 0.00048 28.8 4.3 49 90-147 196-244 (258)
124 2a6c_A Helix-turn-helix motif; 53.7 7.4 0.00025 24.9 2.2 23 118-140 34-56 (83)
125 1y7y_A C.AHDI; helix-turn-heli 53.6 6.8 0.00023 23.8 1.9 22 118-139 29-50 (74)
126 3kz3_A Repressor protein CI; f 53.1 6.5 0.00022 24.8 1.8 23 118-140 28-50 (80)
127 1rzs_A Antirepressor, regulato 52.0 8.4 0.00029 23.6 2.1 19 118-136 13-31 (61)
128 1u78_A TC3 transposase, transp 50.3 17 0.0006 24.9 3.9 43 90-140 5-47 (141)
129 2kpj_A SOS-response transcript 50.1 8 0.00027 25.2 1.9 23 118-140 25-47 (94)
130 2ef8_A C.ECOT38IS, putative tr 49.4 8.6 0.00029 24.0 1.9 23 118-140 26-48 (84)
131 2ict_A Antitoxin HIGA; helix-t 49.3 8.9 0.00031 24.9 2.1 23 118-140 24-46 (94)
132 2k9q_A Uncharacterized protein 48.7 8 0.00028 24.1 1.7 23 118-140 18-40 (77)
133 2hin_A GP39, repressor protein 48.3 13 0.00044 24.0 2.6 21 118-138 13-33 (71)
134 2x48_A CAG38821; archeal virus 46.4 11 0.00039 21.9 2.0 20 118-137 34-53 (55)
135 3ulq_B Transcriptional regulat 46.4 23 0.00078 23.4 3.8 51 87-146 25-75 (90)
136 1pdn_C Protein (PRD paired); p 46.3 25 0.00085 23.3 4.1 44 90-141 16-59 (128)
137 3f6w_A XRE-family like protein 45.9 10 0.00035 23.8 1.9 23 118-140 30-52 (83)
138 1neq_A DNA-binding protein NER 45.5 11 0.00037 24.2 1.9 21 118-138 25-45 (74)
139 1lmb_3 Protein (lambda repress 45.2 11 0.00036 24.2 1.9 22 118-139 33-54 (92)
140 1k78_A Paired box protein PAX5 43.7 79 0.0027 21.9 6.6 49 89-140 88-143 (149)
141 3t76_A VANU, transcriptional r 43.5 12 0.0004 24.9 1.9 22 118-139 40-61 (88)
142 2l49_A C protein; P2 bacteriop 43.1 12 0.00042 24.3 2.0 23 118-140 20-42 (99)
143 1x57_A Endothelial differentia 42.2 13 0.00044 23.9 2.0 41 93-140 11-51 (91)
144 3s8q_A R-M controller protein; 41.8 13 0.00045 23.2 1.9 22 118-139 27-48 (82)
145 3qq6_A HTH-type transcriptiona 40.8 14 0.00047 23.3 1.9 21 118-138 26-46 (78)
146 2ewt_A BLDD, putative DNA-bind 40.6 14 0.00048 22.2 1.9 22 118-139 24-47 (71)
147 3mn2_A Probable ARAC family tr 40.5 61 0.0021 21.2 5.3 40 96-139 3-42 (108)
148 1k78_A Paired box protein PAX5 40.0 33 0.0011 24.0 4.1 44 90-141 31-74 (149)
149 1pdn_C Protein (PRD paired); p 38.2 40 0.0014 22.3 4.1 47 89-138 73-126 (128)
150 2ofy_A Putative XRE-family tra 38.2 16 0.00054 23.0 1.9 23 118-140 30-52 (86)
151 1l9z_H Sigma factor SIGA; heli 37.1 21 0.00072 30.9 3.0 53 91-147 375-428 (438)
152 3oio_A Transcriptional regulat 36.8 64 0.0022 21.4 5.0 40 96-139 8-47 (113)
153 3iyd_F RNA polymerase sigma fa 36.5 19 0.00064 32.2 2.6 56 90-149 549-604 (613)
154 2pij_A Prophage PFL 6 CRO; tra 35.8 21 0.00073 21.3 2.1 22 118-139 16-37 (67)
155 2a6h_F RNA polymerase sigma fa 35.8 22 0.00075 30.3 2.9 52 91-146 360-412 (423)
156 2k27_A Paired box protein PAX- 35.6 39 0.0013 24.0 3.9 43 90-140 24-66 (159)
157 2q0o_A Probable transcriptiona 35.4 32 0.0011 26.2 3.6 50 89-147 173-222 (236)
158 3fmy_A HTH-type transcriptiona 35.3 18 0.00062 22.4 1.8 41 90-140 9-49 (73)
159 3op9_A PLI0006 protein; struct 35.3 19 0.00065 24.1 2.0 23 118-140 25-47 (114)
160 1u78_A TC3 transposase, transp 35.0 74 0.0025 21.5 5.2 46 89-141 58-105 (141)
161 1uxc_A FRUR (1-57), fructose r 34.9 22 0.00076 22.2 2.1 23 118-140 3-25 (65)
162 3cec_A Putative antidote prote 34.6 19 0.00065 23.7 1.9 23 118-140 34-56 (104)
163 1b0n_A Protein (SINR protein); 34.4 20 0.00067 23.6 1.9 21 118-138 17-37 (111)
164 1iuf_A Centromere ABP1 protein 34.3 87 0.003 22.1 5.6 60 84-143 73-141 (144)
165 3qp6_A CVIR transcriptional re 33.9 39 0.0013 26.5 3.9 50 89-147 195-244 (265)
166 3bdn_A Lambda repressor; repre 33.7 23 0.0008 26.7 2.5 19 120-138 35-53 (236)
167 3ivp_A Putative transposon-rel 33.4 20 0.00068 24.5 1.9 23 118-140 28-50 (126)
168 3mkl_A HTH-type transcriptiona 33.2 45 0.0015 22.5 3.7 40 94-137 6-45 (120)
169 2eby_A Putative HTH-type trans 33.1 21 0.00071 23.9 1.9 23 118-140 27-49 (113)
170 3eus_A DNA-binding protein; st 32.9 21 0.00072 22.8 1.8 23 118-140 30-52 (86)
171 1l3l_A Transcriptional activat 32.7 37 0.0013 25.8 3.5 51 88-147 170-220 (234)
172 2v79_A DNA replication protein 32.4 71 0.0024 22.7 4.8 50 90-142 28-78 (135)
173 2ppx_A AGR_C_3184P, uncharacte 32.2 23 0.00077 23.3 1.9 22 118-139 46-67 (99)
174 3mlf_A Transcriptional regulat 32.2 23 0.00077 24.1 2.0 22 118-139 39-60 (111)
175 2jvl_A TRMBF1; coactivator, he 31.8 23 0.00078 23.8 1.9 23 118-140 52-74 (107)
176 3vk0_A NHTF, transcriptional r 31.7 22 0.00077 23.9 1.9 23 118-140 37-59 (114)
177 3oou_A LIN2118 protein; protei 31.4 62 0.0021 21.3 4.1 40 96-139 6-45 (108)
178 3g5g_A Regulatory protein; tra 30.2 25 0.00087 23.3 1.9 22 118-139 44-65 (99)
179 2k9s_A Arabinose operon regula 29.7 1.1E+02 0.0039 19.8 5.3 39 97-138 5-43 (107)
180 2kvr_A Ubiquitin carboxyl-term 28.9 16 0.00056 26.2 0.8 26 116-141 70-95 (130)
181 1j9i_A GPNU1 DBD;, terminase s 28.7 35 0.0012 20.9 2.3 21 118-138 5-25 (68)
182 3f52_A CLP gene regulator (CLG 28.3 27 0.00091 23.5 1.8 23 118-140 44-66 (117)
183 3trb_A Virulence-associated pr 28.2 28 0.00096 23.5 1.9 23 118-140 30-52 (104)
184 3lfp_A CSP231I C protein; tran 27.5 31 0.001 22.4 1.9 22 118-139 17-42 (98)
185 1zs4_A Regulatory protein CII; 27.4 35 0.0012 22.8 2.2 22 116-137 25-46 (83)
186 2ao9_A Phage protein; structur 26.3 46 0.0016 24.7 2.9 49 89-137 21-70 (155)
187 2jml_A DNA binding domain/tran 26.2 26 0.0009 22.4 1.4 20 118-137 8-27 (81)
188 3kz3_A Repressor protein CI; f 25.6 1.1E+02 0.0038 18.7 4.4 37 99-138 41-77 (80)
189 2l8n_A Transcriptional repress 25.3 31 0.0011 21.6 1.5 22 118-139 12-33 (67)
190 1jhf_A LEXA repressor; LEXA SO 24.5 82 0.0028 23.2 4.1 44 91-140 3-51 (202)
191 3kxa_A NGO0477 protein, putati 24.3 36 0.0012 24.2 1.9 23 118-140 84-106 (141)
192 4ghj_A Probable transcriptiona 24.2 45 0.0016 22.5 2.4 21 118-138 52-72 (101)
193 1bl0_A Protein (multiple antib 24.2 1E+02 0.0035 20.9 4.3 42 93-138 9-50 (129)
194 1y66_A Engrailed homeodomain; 24.0 19 0.00065 21.4 0.3 48 92-142 4-51 (52)
195 2fjr_A Repressor protein CI; g 23.4 36 0.0012 24.8 1.8 23 117-139 22-44 (189)
196 2o38_A Hypothetical protein; a 23.3 39 0.0013 23.4 1.9 23 118-140 56-78 (120)
197 3i9v_2 NADH-quinone oxidoreduc 22.9 72 0.0025 24.0 3.5 36 95-133 26-61 (181)
198 3o9x_A Uncharacterized HTH-typ 22.4 41 0.0014 23.1 1.9 23 118-140 87-109 (133)
199 2jrt_A Uncharacterized protein 22.3 47 0.0016 22.4 2.1 48 87-141 28-75 (95)
200 1bjf_A Neurocalcin delta; calc 22.3 81 0.0028 22.1 3.6 31 111-141 6-36 (193)
201 2iw5_B Protein corest, REST co 22.3 2.9E+02 0.01 21.8 8.2 70 68-144 112-182 (235)
202 1x6i_A Hypothetical protein YG 22.2 98 0.0034 20.7 3.7 44 94-139 21-64 (91)
203 1xwr_A Regulatory protein CII; 22.0 45 0.0015 22.8 1.9 23 115-137 23-45 (97)
204 2cw1_A SN4M; lambda CRO fold, 21.5 44 0.0015 21.0 1.7 22 117-138 15-36 (65)
205 2pmy_A RAS and EF-hand domain- 21.5 1.1E+02 0.0037 19.1 3.8 49 90-138 19-69 (91)
206 2q24_A Putative TETR family tr 21.3 52 0.0018 23.2 2.3 39 97-140 21-59 (194)
207 1c05_A Ribosomal protein S4 de 21.3 54 0.0019 24.1 2.4 27 116-142 11-37 (159)
208 1y9q_A Transcriptional regulat 20.7 44 0.0015 24.3 1.8 23 118-140 27-49 (192)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.85 E-value=7.6e-22 Score=137.07 Aligned_cols=65 Identities=46% Similarity=0.680 Sum_probs=61.4
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSE 148 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~ 148 (166)
+++|+|+.|+.+++.+|+.||.+|..+|||+..+|..||..|||+..||+|||+|+|+|.|+++.
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999887653
No 2
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=3.9e-21 Score=129.98 Aligned_cols=66 Identities=42% Similarity=0.734 Sum_probs=62.2
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSEN 149 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~~ 149 (166)
+.+++|+.|+..++.+|+.||.+|..+|||+..++..||..|||+..||++||+|+|+|.|++..+
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 467889999999999999999999999999999999999999999999999999999999988654
No 3
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=1.3e-20 Score=124.31 Aligned_cols=62 Identities=31% Similarity=0.544 Sum_probs=58.7
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 85 KKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 85 ~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
.+++|+.|+.++..+|+.||..|..+|||+..++..||..|||+..||++||+|+|+|.|++
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 46889999999999999999988889999999999999999999999999999999998874
No 4
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=9.9e-21 Score=126.53 Aligned_cols=60 Identities=43% Similarity=0.763 Sum_probs=54.0
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCC
Q 045160 89 KGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSE 148 (166)
Q Consensus 89 r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~ 148 (166)
.++||++++.+|+.||.+|..+|||+..++..||..|||+..||++||+|+|+|.|+++.
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 468999999999999999999999999999999999999999999999999999998864
No 5
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.81 E-value=3.4e-20 Score=125.35 Aligned_cols=64 Identities=31% Similarity=0.586 Sum_probs=60.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCCC
Q 045160 86 KKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSEN 149 (166)
Q Consensus 86 kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~~ 149 (166)
+|+|+.|+..++.+|+.||..|..+|||+..++..||..+||+..||++||+|+|+|.|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6789999999999999999988889999999999999999999999999999999998887644
No 6
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.81 E-value=4.4e-20 Score=120.24 Aligned_cols=59 Identities=25% Similarity=0.469 Sum_probs=56.1
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 88 KKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 88 ~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
+++.|+.++..+|+.||..|+.+|||+..++..||..+||+..||++||+|+|+|.|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 46899999999999999999999999999999999999999999999999999997764
No 7
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.81 E-value=8.4e-20 Score=126.56 Aligned_cols=62 Identities=23% Similarity=0.407 Sum_probs=57.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 86 KKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 86 kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
+++++.|+.+++.+|+.||..|..+|||+..++..||..|||+..||++||+|+|+|.|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 45566799999999999999999999999999999999999999999999999999988874
No 8
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.80 E-value=1.1e-19 Score=126.93 Aligned_cols=61 Identities=26% Similarity=0.478 Sum_probs=58.0
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHW 144 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~k 144 (166)
.++++|+.|+.+++.+|+.||..|+.+|||+..++..||..|||+..||++||+|+|+|.|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4567789999999999999999999999999999999999999999999999999999965
No 9
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-20 Score=130.71 Aligned_cols=59 Identities=42% Similarity=0.637 Sum_probs=56.1
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 89 KGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 89 r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
..-|+++++.+|+.||.+|..+|||+.++|..||..|||+..||+|||+|+|+|.|++.
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 35799999999999999999999999999999999999999999999999999998774
No 10
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.79 E-value=9.8e-20 Score=126.82 Aligned_cols=64 Identities=31% Similarity=0.586 Sum_probs=59.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCCC
Q 045160 86 KKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSEN 149 (166)
Q Consensus 86 kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~~ 149 (166)
+|+|+.|+.+++.+|+.||..|..+|||+..++..||..+||+..||++||+|+|+|.|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6789999999999999999888889999999999999999999999999999999998887643
No 11
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=1.8e-18 Score=114.67 Aligned_cols=63 Identities=32% Similarity=0.386 Sum_probs=58.6
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSEN 149 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~~ 149 (166)
+++++|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 64 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIM 64 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhhh
Confidence 45788999999999999999999 9999999999999999999999999999999998887543
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.76 E-value=1.1e-18 Score=113.74 Aligned_cols=58 Identities=24% Similarity=0.379 Sum_probs=48.1
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHW 144 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~k 144 (166)
+++++|+.|+.++..+|+.||.. +|||+..++..||..+||+..||.+||+|+|+|.+
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45788999999999999999999 89999999999999999999999999999999854
No 13
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=2.6e-18 Score=117.67 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=54.7
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 87 KKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 87 r~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
.++++|+.+|+.+|+.||.. +|||+..++..||..|||+..||++||+|+|.|.|+..
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 56788999999999999999 99999999999999999999999999999999987764
No 14
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.75 E-value=2.3e-18 Score=112.52 Aligned_cols=59 Identities=31% Similarity=0.448 Sum_probs=52.6
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWK 145 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk 145 (166)
.++++|+.|+.+|..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 35788999999999999999999 999999999999999999999999999999999776
No 15
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=4.5e-18 Score=113.85 Aligned_cols=63 Identities=24% Similarity=0.432 Sum_probs=59.1
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSEN 149 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~~ 149 (166)
+.+++|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...+
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 56788999999999999999999 9999999999999999999999999999999998887644
No 16
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=114.07 Aligned_cols=64 Identities=19% Similarity=0.341 Sum_probs=59.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCCCcch
Q 045160 86 KKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSENMHF 152 (166)
Q Consensus 86 kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~~~~~ 152 (166)
+++|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++....+++
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~~q~ 65 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRESQF 65 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCTTCC
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchhccc
Confidence 678999999999999999998 9999999999999999999999999999999998888655443
No 17
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=5.8e-18 Score=113.50 Aligned_cols=61 Identities=26% Similarity=0.381 Sum_probs=57.7
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
..+++|+.|+.+|..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 56788999999999999999999 99999999999999999999999999999999988764
No 18
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=6.4e-18 Score=113.19 Aligned_cols=61 Identities=21% Similarity=0.441 Sum_probs=57.6
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
..+++|+.|+.+|..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 46788999999999999999999 99999999999999999999999999999999987764
No 19
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=5e-18 Score=109.62 Aligned_cols=57 Identities=19% Similarity=0.351 Sum_probs=54.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCC
Q 045160 86 KKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWK 145 (166)
Q Consensus 86 kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk 145 (166)
+++|+.|+.+|..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 478899999999999999999 999999999999999999999999999999999664
No 20
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.73 E-value=4.8e-18 Score=111.69 Aligned_cols=60 Identities=22% Similarity=0.318 Sum_probs=54.7
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
+.+++|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||++||+|+|.|.++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 35788999999999999999999 9999999999999999999999999999999997764
No 21
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=7.8e-18 Score=112.86 Aligned_cols=61 Identities=26% Similarity=0.362 Sum_probs=57.6
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
..+++|+.|+.+|..+|+.+|.. +|||+..++..||..+||+..||++||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 56788999999999999999998 99999999999999999999999999999999988764
No 22
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.73 E-value=7.3e-18 Score=110.43 Aligned_cols=59 Identities=24% Similarity=0.355 Sum_probs=51.6
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWK 145 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk 145 (166)
.++++|+.|+.++..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 35788999999999999999999 999999999999999999999999999999999776
No 23
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=6.3e-18 Score=113.15 Aligned_cols=62 Identities=23% Similarity=0.447 Sum_probs=58.1
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSE 148 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~ 148 (166)
..+++|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 56788999999999999999999 999999999999999999999999999999999887653
No 24
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.72 E-value=1.1e-17 Score=113.07 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=59.0
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSEN 149 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~~ 149 (166)
..+++|+.|+..|..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 46788999999999999999999 9999999999999999999999999999999998887644
No 25
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=114.26 Aligned_cols=61 Identities=25% Similarity=0.428 Sum_probs=57.6
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
+.+++|+.|+.+|..+|+.+|.. ++||+..++..||..+||+..||++||+|+|+|.|+..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 45788999999999999999999 99999999999999999999999999999999988764
No 26
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.72 E-value=8.8e-18 Score=108.05 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=54.1
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcC
Q 045160 85 KKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHW 144 (166)
Q Consensus 85 ~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~k 144 (166)
+++.|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 5788999999999999999998 99999999999999999999999999999999854
No 27
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=1e-17 Score=114.97 Aligned_cols=63 Identities=16% Similarity=0.333 Sum_probs=59.0
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSEN 149 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~~ 149 (166)
+.+++|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 56788999999999999999999 9999999999999999999999999999999998887644
No 28
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=6.9e-18 Score=115.50 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=57.5
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
+++|+|+.|+.+|..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|+|.|+..
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 46788999999999999999999 89999999999999999999999999999999988764
No 29
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.72 E-value=1e-17 Score=115.58 Aligned_cols=63 Identities=13% Similarity=0.301 Sum_probs=58.2
Q ss_pred ccCCCCCCCChHHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNA-HYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~-h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
+++|+|+.|+.+|+..|+.+|.. |+.+|||+..++..||..+||++.||++||+|+|.|.++.
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 46788999999999999999996 6778999999999999999999999999999999997754
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.72 E-value=8e-18 Score=109.54 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=53.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCC
Q 045160 86 KKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWK 145 (166)
Q Consensus 86 kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk 145 (166)
+++|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 578899999999999999999 999999999999999999999999999999999765
No 31
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=8.9e-18 Score=112.58 Aligned_cols=61 Identities=20% Similarity=0.390 Sum_probs=56.9
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
..+++|+.|+.+|..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|+|.++..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 45778999999999999999999 99999999999999999999999999999999977653
No 32
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8.3e-18 Score=115.29 Aligned_cols=61 Identities=25% Similarity=0.422 Sum_probs=57.7
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
.++++|+.|+.+|..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 56788999999999999999999 99999999999999999999999999999999988764
No 33
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.71 E-value=1.5e-17 Score=110.91 Aligned_cols=62 Identities=18% Similarity=0.340 Sum_probs=58.0
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCCC
Q 045160 85 KKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSEN 149 (166)
Q Consensus 85 ~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~~ 149 (166)
++++|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 5788999999999999999999 9999999999999999999999999999999998877543
No 34
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.71 E-value=1.4e-17 Score=114.65 Aligned_cols=60 Identities=23% Similarity=0.405 Sum_probs=56.6
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
+++++|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|+|.++.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 56788999999999999999999 9999999999999999999999999999999997764
No 35
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=113.07 Aligned_cols=61 Identities=23% Similarity=0.310 Sum_probs=57.5
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
+++++|+.|+..+..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 56788999999999999999999 99999999999999999999999999999999988764
No 36
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=110.80 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=58.5
Q ss_pred hccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCC
Q 045160 83 FSKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSE 148 (166)
Q Consensus 83 ~~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~ 148 (166)
.++++.|+.|+..+..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 356788999999999999999999 999999999999999999999999999999999887643
No 37
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.9e-18 Score=117.10 Aligned_cols=64 Identities=13% Similarity=0.234 Sum_probs=57.7
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAH-YKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h-~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
+++++|+.|+.+|+.+|+.+|..+ ..+|||+..++..||..+||+..||++||+|+|+|.++..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 567889999999999999999993 2239999999999999999999999999999999988754
No 38
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.70 E-value=1.8e-17 Score=113.09 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=56.5
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
++++.|+.|+..|..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 56778999999999999999999 9999999999999999999999999999999997764
No 39
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.70 E-value=1.3e-17 Score=111.41 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=56.9
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 85 KKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 85 ~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
++++|+.|+..|...|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 4788999999999999999999 99999999999999999999999999999999988764
No 40
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.70 E-value=1.5e-17 Score=111.01 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=56.6
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 85 KKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 85 ~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
++++|+.|+..+..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 5788999999999999999999 99999999999999999999999999999999987653
No 41
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.70 E-value=2.8e-17 Score=112.15 Aligned_cols=61 Identities=25% Similarity=0.288 Sum_probs=56.8
Q ss_pred hccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 83 FSKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 83 ~~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
...+++|+.|+..+..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 346788999999999999999999 9999999999999999999999999999999997764
No 42
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.69 E-value=3.6e-17 Score=106.43 Aligned_cols=56 Identities=23% Similarity=0.343 Sum_probs=50.1
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 88 KKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 88 ~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
.|+.|+.+|..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|+|.++.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CCcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 4689999999999999999 9999999999999999999999999999999998765
No 43
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.69 E-value=6.7e-18 Score=112.60 Aligned_cols=62 Identities=23% Similarity=0.410 Sum_probs=57.8
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSE 148 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~ 148 (166)
+++++|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 46788999999999999999999 999999999999999999999999999999999877643
No 44
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=5.8e-17 Score=110.28 Aligned_cols=61 Identities=20% Similarity=0.339 Sum_probs=56.7
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCC
Q 045160 85 KKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSE 148 (166)
Q Consensus 85 ~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~ 148 (166)
..+.|+.|+.+|..+|+.+|.. +|||+..++..||..+||+..||++||+|+|.|.|+...
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 4556899999999999999999 999999999999999999999999999999999888653
No 45
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.69 E-value=2.2e-17 Score=116.74 Aligned_cols=66 Identities=18% Similarity=0.347 Sum_probs=59.9
Q ss_pred hhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCCC
Q 045160 81 LEFSKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSEN 149 (166)
Q Consensus 81 ~~~~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~~ 149 (166)
...+++++|+.|+.++...|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 34467788999999999999999999 9999999999999999999999999999999998876433
No 46
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=2.4e-17 Score=113.26 Aligned_cols=61 Identities=21% Similarity=0.386 Sum_probs=57.4
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
..+++|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 56788999999999999999998 99999999999999999999999999999999987754
No 47
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.68 E-value=6.5e-17 Score=111.45 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=53.9
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
.++++|+.|+..+..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 46788999999999999999999 99999999999999999999999999999999988753
No 48
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.67 E-value=6.4e-17 Score=104.01 Aligned_cols=53 Identities=19% Similarity=0.371 Sum_probs=49.4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCC
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWK 145 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk 145 (166)
+.|+.+|...|+.+|.. +|||+..++..||..+||+..||++||+|+|.|.++
T Consensus 2 T~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp --CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 57999999999999999 999999999999999999999999999999999765
No 49
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=7.8e-17 Score=108.86 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=55.2
Q ss_pred CCCCCCCChHHHHHHHHHHH-HhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 86 KKKKGKLPKESRQTLLDWWN-AHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 86 kr~r~~~~~~~~~~L~~~f~-~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
.++|+.|+.++..+|+.+|. . ++||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 57789999999999999999 6 89999999999999999999999999999999977654
No 50
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=106.36 Aligned_cols=61 Identities=21% Similarity=0.358 Sum_probs=57.1
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCC
Q 045160 85 KKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSE 148 (166)
Q Consensus 85 ~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~ 148 (166)
.++.|+.|+.+|..+|+.+|.. ++||+..++..||..+||+..||++||+|+|.|.|+...
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 4678999999999999999999 999999999999999999999999999999999877643
No 51
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.66 E-value=1e-16 Score=110.58 Aligned_cols=62 Identities=15% Similarity=0.279 Sum_probs=56.1
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYK--WPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~--~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
+++|+|+.|+.+|+..|+ .|..|+. ++||+..++..||..+||++.||++||+|+|.|.++.
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 467889999999999999 6887544 8999999999999999999999999999999997664
No 52
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=1.2e-16 Score=107.58 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=54.8
Q ss_pred CCCCCCCChHHHHHHHHHHH-HhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 86 KKKKGKLPKESRQTLLDWWN-AHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 86 kr~r~~~~~~~~~~L~~~f~-~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
.++|+.|+.++..+|+.+|. . ++||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSS---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 36789999999999999998 5 89999999999999999999999999999999987754
No 53
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.66 E-value=9.9e-17 Score=112.00 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=54.0
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
..+++|+.|+..+..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 45788999999999999999998 9999999999999999999999999999999997764
No 54
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=107.11 Aligned_cols=59 Identities=20% Similarity=0.349 Sum_probs=55.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 86 KKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 86 kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
.++|..|+.+|..+|+..|.. ++||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 456778999999999999999 99999999999999999999999999999999987764
No 55
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=4e-16 Score=109.78 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=53.4
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCCC
Q 045160 88 KKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSEN 149 (166)
Q Consensus 88 ~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~~ 149 (166)
+...|+.+|+.+|+.+|.. ++||+..++..||..|||+..||.+||+|+|.|.++....
T Consensus 14 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~ 72 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEK 72 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSC
T ss_pred hhccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHH
Confidence 3348999999999999999 9999999999999999999999999999999987665443
No 56
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=119.71 Aligned_cols=60 Identities=20% Similarity=0.428 Sum_probs=56.5
Q ss_pred hccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCC
Q 045160 83 FSKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWK 145 (166)
Q Consensus 83 ~~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk 145 (166)
.+++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||++||+|+|+|.||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 356778999999999999999999 999999999999999999999999999999999776
No 57
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.64 E-value=3.1e-16 Score=120.84 Aligned_cols=62 Identities=21% Similarity=0.364 Sum_probs=54.7
Q ss_pred hccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 83 FSKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 83 ~~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
.+++|+|+.|+..|+.+|+.+|.. +|||+..++..||..+||+..||++||+|+|+|.|+..
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 356788999999999999999999 89999999999999999999999999999999988775
No 58
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=2e-16 Score=112.01 Aligned_cols=61 Identities=25% Similarity=0.439 Sum_probs=57.7
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------CChhhhhhhhhhHHhhcCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTG---------------LDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tg---------------Ls~~qV~~WF~N~R~R~kk~~ 147 (166)
+++|.|+.|+..++.+|+.+|.. +|||+..++..||..+| |+..||.+||+|+|+|.++..
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 56788999999999999999999 99999999999999999 999999999999999987764
No 59
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.8e-16 Score=112.63 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=53.9
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
..+++|+.|+.+|..+|+.+|.. ++||+..++..||..+||+..||++||+|+|.|.|+.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 46788999999999999999998 9999999999999999999999999999999997764
No 60
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.63 E-value=4.4e-16 Score=110.44 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=55.3
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 85 KKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 85 ~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
.+++|+.|+..+..+|+.+|.. ++||+..++..||..+||+..||++||+|+|.|.|+..
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 4678899999999999999999 99999999999999999999999999999999988763
No 61
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=106.93 Aligned_cols=58 Identities=24% Similarity=0.335 Sum_probs=52.9
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 87 KKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 87 r~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
+++..|+.+|+.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|+|.++..
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 34455999999999999999 99999999999999999999999999999999976654
No 62
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.62 E-value=3.7e-16 Score=104.02 Aligned_cols=51 Identities=29% Similarity=0.484 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCC
Q 045160 92 LPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWK 145 (166)
Q Consensus 92 ~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk 145 (166)
-+++|+..|+..|.. ++||+..++..||..|||+..||.+||+|+|.|.|+
T Consensus 11 ~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 11 KTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 378999999999999 999999999999999999999999999999999664
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.61 E-value=1.2e-15 Score=116.01 Aligned_cols=61 Identities=20% Similarity=0.453 Sum_probs=54.7
Q ss_pred hccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 83 FSKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 83 ~~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
.+++|+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||++||+|+|.|.|+.
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 356778999999999999999999 9999999999999999999999999999999997763
No 64
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.60 E-value=1.2e-15 Score=117.55 Aligned_cols=60 Identities=23% Similarity=0.390 Sum_probs=54.3
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
+++|+|+.|+..|..+|+.+|.. +|||+..++..||..+||+..||++||+|+|+|.|+.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 46788999999999999999999 9999999999999999999999999999999998774
No 65
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.60 E-value=1.1e-15 Score=118.41 Aligned_cols=63 Identities=22% Similarity=0.385 Sum_probs=51.7
Q ss_pred hccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCC
Q 045160 83 FSKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSE 148 (166)
Q Consensus 83 ~~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~ 148 (166)
.+++|+|+.|+..|+..|+.+|.. +|||+..++..||..+||+..||++||+|+|+|.|+...
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ---------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccCCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 456788999999999999999999 999999999999999999999999999999999887653
No 66
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=100.47 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=50.9
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCC
Q 045160 88 KKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWK 145 (166)
Q Consensus 88 ~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk 145 (166)
.+..+.++|+..|+.+|.. ++||+..++..||..+||+..||++||+|+|+|.++
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4466779999999999998 999999999999999999999999999999999665
No 67
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=1.3e-15 Score=103.03 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=53.4
Q ss_pred CCCCCCCChHHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 86 KKKKGKLPKESRQTLLDWW-NAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 86 kr~r~~~~~~~~~~L~~~f-~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
.++++.++.++..+|+..| .. ++||+..++..||..+||+..||++||+|+|.|.++..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4566778889999999999 77 99999999999999999999999999999999977653
No 68
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.58 E-value=2.3e-15 Score=107.74 Aligned_cols=62 Identities=23% Similarity=0.377 Sum_probs=53.3
Q ss_pred hccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH------------------hC---CChhhhhhhhhhHHh
Q 045160 83 FSKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAES------------------TG---LDQKQINNWFINQRK 141 (166)
Q Consensus 83 ~~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~------------------tg---Ls~~qV~~WF~N~R~ 141 (166)
.+++|.|+.|+..+..+|+.+|.. +|||+..+|..||.. +| |+..||.+||+|+|+
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 356788999999999999999999 999999999999999 88 999999999999999
Q ss_pred hcCCCC
Q 045160 142 RHWKPS 147 (166)
Q Consensus 142 R~kk~~ 147 (166)
+.+...
T Consensus 84 k~k~k~ 89 (99)
T 1lfb_A 84 EEAFRH 89 (99)
T ss_dssp TTSCCC
T ss_pred HHHHhc
Confidence 987664
No 69
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=6.7e-15 Score=98.43 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=57.6
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
.++|.|+.|+.+|..+|+..|..- ++||+.+.++.||.+|||++.+|++||||+|--.+.+.
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~--~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~~ 67 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSG 67 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCCC
Confidence 568899999999999999999985 79999999999999999999999999999999877654
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.58 E-value=5.5e-15 Score=99.30 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=51.5
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
..++..+...|+..|.. ++||+..++..||..+||+..||++||+|+|.|.|+..
T Consensus 9 ~~~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 46789999999999999 99999999999999999999999999999999977764
No 71
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.6e-15 Score=106.70 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=56.9
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh---------------------CCChhhhhhhhhhHHhh
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAEST---------------------GLDQKQINNWFINQRKR 142 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~t---------------------gLs~~qV~~WF~N~R~R 142 (166)
+++|.|+.|++.+..+|+.+|.. +|||+..+|+.||..+ +|+..+|.|||+|+|+|
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 56788999999999999999999 9999999999999999 79999999999999999
Q ss_pred cCCCC
Q 045160 143 HWKPS 147 (166)
Q Consensus 143 ~kk~~ 147 (166)
.++..
T Consensus 82 ~kr~~ 86 (102)
T 2da6_A 82 EAFRQ 86 (102)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 77653
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.55 E-value=2.6e-15 Score=115.11 Aligned_cols=60 Identities=22% Similarity=0.444 Sum_probs=56.2
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
+++|+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||++||+|+|.|.|+.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 56788999999999999999998 9999999999999999999999999999999997764
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.51 E-value=1.6e-14 Score=95.74 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 95 ESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 95 ~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
.+...|+..|..+ ++||+..++..||+++||+..||++||+|+|.+.|+.
T Consensus 10 ~~~~~LE~~F~~~--~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 10 QPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp CHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred hHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 4688999999543 8999999999999999999999999999999996654
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.4e-13 Score=90.51 Aligned_cols=46 Identities=20% Similarity=0.411 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhh
Q 045160 94 KESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKR 142 (166)
Q Consensus 94 ~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R 142 (166)
++++.+|+++|.. ||||+.+++..||..+||+.++|++||+|+|.+
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 6789999999999 999999999999999999999999999999986
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.40 E-value=3.7e-13 Score=108.50 Aligned_cols=57 Identities=23% Similarity=0.437 Sum_probs=53.1
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhHHhh
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTG---------------------LDQKQINNWFINQRKR 142 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tg---------------------Ls~~qV~~WF~N~R~R 142 (166)
+++|.|+.|++.+..+|+.||.. +|||+..+|+.||..+| |+..||.|||+|+|++
T Consensus 141 k~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 141 KMRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp -CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 46788999999999999999999 99999999999999998 8999999999999987
Q ss_pred c
Q 045160 143 H 143 (166)
Q Consensus 143 ~ 143 (166)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.39 E-value=1.4e-13 Score=109.19 Aligned_cols=60 Identities=22% Similarity=0.365 Sum_probs=53.2
Q ss_pred hccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhHHh
Q 045160 83 FSKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTG---------------------LDQKQINNWFINQRK 141 (166)
Q Consensus 83 ~~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tg---------------------Ls~~qV~~WF~N~R~ 141 (166)
.+++|.|+.|++.++.+|+.+|.. +|||+..+|..||..+| |+..||.+||+|+|+
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~ 189 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 189 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhh
Confidence 356788999999999999999999 89999999999999999 999999999999999
Q ss_pred hcCC
Q 045160 142 RHWK 145 (166)
Q Consensus 142 R~kk 145 (166)
+.+.
T Consensus 190 ~~k~ 193 (194)
T 1ic8_A 190 EEAF 193 (194)
T ss_dssp HCC-
T ss_pred hhhc
Confidence 9663
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.33 E-value=1e-12 Score=111.40 Aligned_cols=56 Identities=21% Similarity=0.344 Sum_probs=52.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcC
Q 045160 86 KKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHW 144 (166)
Q Consensus 86 kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~k 144 (166)
++.++.|...++..|+..|.. +|||+..+|..||++|||+.+||++||+|+|+|.|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 455678999999999999999 89999999999999999999999999999999965
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.13 E-value=2.3e-07 Score=54.77 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=22.9
Q ss_pred hhhhhhhhhHHhhcCCCCCCcchhhcccCCCCCCCC
Q 045160 130 KQINNWFINQRKRHWKPSENMHFAVMDNLSGPLFTD 165 (166)
Q Consensus 130 ~qV~~WF~N~R~R~kk~~~~~~~~~~d~~~~~~~~~ 165 (166)
.||.+||+|+|.|.|+....+.........+..|.|
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~~~~~~~q~~~ 36 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDIIQRMHLRQYEL 36 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSSSSTTCCTTSC
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHHHHhccccccc
Confidence 489999999999988776443333323333444443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.69 E-value=0.0012 Score=43.88 Aligned_cols=46 Identities=28% Similarity=0.486 Sum_probs=40.4
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhH
Q 045160 91 KLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 91 ~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~ 139 (166)
..++..+++|+++|.. +....+++...|+.+++|+..||+.||.-+
T Consensus 12 ~~~p~~~e~L~~Yy~~---hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 12 PPPPPDIQPLERYWAA---HQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCCHHHHHHHHH---TCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHH---hcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 3455568899999999 588999999999999999999999999754
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=90.79 E-value=0.78 Score=32.16 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=39.6
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhh
Q 045160 87 KKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKR 142 (166)
Q Consensus 87 r~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R 142 (166)
++|..|+.+.+..+-.++.+ ++.++. ..+|+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~---~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEE---NPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHH---CTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHH---CCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 35778999999877777766 576653 368999999999999999887653
No 81
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=90.41 E-value=0.21 Score=33.41 Aligned_cols=49 Identities=12% Similarity=0.176 Sum_probs=39.7
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 91 KLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 91 ~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
.|+..++.+|...|.+ .| .-.++|+.+|++...|.++....|+++++..
T Consensus 37 ~L~~~~r~vl~l~~~~----g~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR----GW----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999876655 33 2458999999999999999999999987643
No 82
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=88.20 E-value=0.97 Score=27.67 Aligned_cols=48 Identities=10% Similarity=0.269 Sum_probs=33.2
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHH
Q 045160 89 KGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 89 r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R 140 (166)
+.+|+.+.+......+.. .++.......+|+.+|++..+|.+|....+
T Consensus 3 r~~ys~efK~~~~~~~~~----g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN----DNDCKGNQRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH----CTTTTTCHHHHHHHTTSCHHHHHHHHTTHH
T ss_pred CCcCCHHHHHHHHHHHHc----CCCcchHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467898887655555444 232122356899999999999999976443
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=86.27 E-value=1.2 Score=29.42 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=34.5
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHh
Q 045160 85 KKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRK 141 (166)
Q Consensus 85 ~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~ 141 (166)
+++++..|+.+.+......+.. .+ ....+|+.+|++...|..|....+.
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~----g~----s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHD----GE----SKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHH----TC----CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHC----CC----CHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 3456678999886655455543 22 2458899999999999999865443
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=83.22 E-value=0.69 Score=28.60 Aligned_cols=51 Identities=18% Similarity=0.102 Sum_probs=39.1
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCC
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSE 148 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~ 148 (166)
..||+..+.+|...|.. .++ -.++|+.+|++...|.++....+.+.++-..
T Consensus 14 ~~L~~~~r~il~l~~~~----g~s----~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~ 64 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLL----GLS----YADAAAVCGCPVGTIRSRVARARDALLADAE 64 (70)
T ss_dssp TSSCHHHHHHHHHHHTS----CCC----HHHHHHHHTSCHHHHHHHHHHHHHHHHC---
T ss_pred HhCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 35889999998776654 332 3579999999999999999999999887653
No 85
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=83.00 E-value=1.1 Score=29.63 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCCC
Q 045160 91 KLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSEN 149 (166)
Q Consensus 91 ~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~~ 149 (166)
.||+.++.+|...|.-.-..++ .-.++|..+|++...|..+....+++.++....
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~----s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~ 72 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK----TLEEVGQYFNVTRERIRQIEVKALRKLRHPSRS 72 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSS
T ss_pred hCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999877651000122 234789999999999999999999999887654
No 86
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=82.53 E-value=1.3 Score=24.78 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=29.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhH
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~ 139 (166)
..++.+.+..+...+.. .+ ....+|+.+|++...|..|....
T Consensus 4 ~~l~~~~~~~i~~~~~~----g~----s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLL----NV----SLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCCCHHHHHHHHHHHHT----TC----CHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHhhH
Confidence 45777777555444444 33 25589999999999999998643
No 87
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=82.35 E-value=0.97 Score=28.25 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=40.2
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCC
Q 045160 91 KLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSE 148 (166)
Q Consensus 91 ~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~ 148 (166)
.||+..+.+|...|.-.-...+ .-.++|+.+|++...|..+....+++.++...
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~ 58 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 58 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCG
T ss_pred cCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 5888899988776621000122 23579999999999999999999999988754
No 88
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=80.47 E-value=1.1 Score=28.34 Aligned_cols=54 Identities=11% Similarity=-0.024 Sum_probs=40.2
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcC-CCC
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHW-KPS 147 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~k-k~~ 147 (166)
..||+..+.+|...|.-.-..++ .-.++|..+|++...|..+....+++.+ ...
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~ 63 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHES 63 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHhcccCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHh
Confidence 35899999999877651000122 2248999999999999999999999988 554
No 89
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=79.22 E-value=3.8 Score=27.40 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=40.1
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCC
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSE 148 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~ 148 (166)
..|++.++.+|... .+ .+. -.++|+.+|++...|.++..+.+++.+....
T Consensus 26 ~~Lt~~e~~vl~l~-~~----g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 26 SGLTDQERTLLGLL-SE----GLT----NKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp -CCCHHHHHHHHHH-HT----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred hcCCHHHHHHHHHH-Hc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 46899999999875 33 332 2589999999999999999999999987753
No 90
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=77.66 E-value=11 Score=26.94 Aligned_cols=51 Identities=12% Similarity=-0.004 Sum_probs=34.8
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCHHHHHH-HHHH------hCCChhhhhhhhhhHHhh
Q 045160 89 KGKLPKESRQTLLDWWNAHYKWPYPTEADKLQ-LAES------TGLDQKQINNWFINQRKR 142 (166)
Q Consensus 89 r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~-LA~~------tgLs~~qV~~WF~N~R~R 142 (166)
+..++.+....+..++.+ +|.-+..+... |.+. ..++...|..|+...+..
T Consensus 81 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~ 138 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ---NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQ 138 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH---CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHH---CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCC
Confidence 456788888888888887 67666655433 3222 147899999998766554
No 91
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=77.56 E-value=1.1 Score=31.67 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=38.3
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 91 KLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 91 ~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
.||+.++.+|. .+.. .| .-.++|+.+|++...|.++....|+++++..
T Consensus 109 ~L~~~~r~v~~-~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR----GY----SYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHTT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 57888999998 4444 44 2357999999999999999999999887643
No 92
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=74.48 E-value=3.1 Score=26.21 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=37.7
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 91 KLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 91 ~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
.|++..+.+|..+ .. .+. -.++|..+|++...|..+....+++.+...
T Consensus 16 ~L~~~e~~vl~l~-~~----g~s----~~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 16 TLSERERQVLSAV-VA----GLP----NKSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HHCHHHHHHHHHH-TT----TCC----HHHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred hCCHHHHHHHHHH-Hc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 3677788888663 32 332 248999999999999999999999988765
No 93
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=74.08 E-value=8.4 Score=25.21 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=39.0
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
..|++..+.+|..+ .+ .+.. .++|+.+|++...|.++..+.+++.+...
T Consensus 28 ~~Lt~~e~~vl~l~-~~----g~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 76 (91)
T 2rnj_A 28 EMLTEREMEILLLI-AK----GYSN----QEIASASHITIKTVKTHVSNILSKLEVQD 76 (91)
T ss_dssp GGCCSHHHHHHHHH-HT----TCCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCS
T ss_pred hcCCHHHHHHHHHH-Hc----CCCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 35888899998764 33 3333 37999999999999999999999988764
No 94
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=73.63 E-value=2 Score=30.17 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=39.2
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 91 KLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 91 ~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
.||+.++.++...|.. .++ -.++|+.+|++...|.+|....|.+.++.
T Consensus 22 ~L~~~~r~vl~l~y~~----g~s----~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD----DYS----LAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHT----CCC----HHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 5889999998877665 332 35799999999999999999999987654
No 95
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=73.15 E-value=7.2 Score=26.54 Aligned_cols=50 Identities=10% Similarity=0.018 Sum_probs=40.0
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 89 KGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 89 r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
...|++..+.+|..++ + .+. -.++|+.+|++...|.++..+.++|..-..
T Consensus 32 ~~~Lt~re~~Vl~l~~-~----G~s----~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~ 81 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-E----GFL----VTEIAKKLNRSIKTISSQKKSAMMKLGVDN 81 (99)
T ss_dssp SSSCCHHHHHHHHHHH-H----TCC----HHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred cCCCCHHHHHHHHHHH-c----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 5679999999996644 4 222 268999999999999999999999876553
No 96
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=72.93 E-value=5.8 Score=26.23 Aligned_cols=46 Identities=15% Similarity=0.320 Sum_probs=32.0
Q ss_pred CCCCChHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHhCCChhhhhhhhhhHHh
Q 045160 89 KGKLPKESRQTLLDWWNAHYKW-PYPTEADKLQLAESTGLDQKQINNWFINQRK 141 (166)
Q Consensus 89 r~~~~~~~~~~L~~~f~~h~~~-pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~ 141 (166)
|..|+.+.+......+.. . .+ ....+|+.+|++...|.+|....+.
T Consensus 3 r~~ys~e~k~~~v~~~~~---~~g~----s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYEN---SDGA----SLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCCCHHHHHHHHHHHTT---GGGS----CHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHH---cCCC----hHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 357888877655444432 1 22 2568999999999999999875543
No 97
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=71.27 E-value=4.1 Score=26.44 Aligned_cols=49 Identities=12% Similarity=0.059 Sum_probs=39.3
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
..|+...+.+|..+ .+ .+ .-.++|+.+|++...|.++..+.+++.+...
T Consensus 20 ~~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 20 NQLTPRERDILKLI-AQ----GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GGSCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 45889899998763 33 33 3458999999999999999999999988764
No 98
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=70.41 E-value=6.6 Score=28.29 Aligned_cols=50 Identities=12% Similarity=0.235 Sum_probs=39.2
Q ss_pred CCCCCCCChHHHHHHHHHH-HHhcCCCCCCHHHHHHHHH----Hh--CCChhhhhhhhhhHHh
Q 045160 86 KKKKGKLPKESRQTLLDWW-NAHYKWPYPTEADKLQLAE----ST--GLDQKQINNWFINQRK 141 (166)
Q Consensus 86 kr~r~~~~~~~~~~L~~~f-~~h~~~pYPs~~ek~~LA~----~t--gLs~~qV~~WF~N~R~ 141 (166)
+++|..++-+++..+..++ .. +|-.+.. .||+ .. |++...|..|..|+-.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL---QNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS---SSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh---CCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 6788999999999998888 55 6766544 4555 67 7899999999988654
No 99
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=70.26 E-value=7.8 Score=26.79 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=40.3
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCC-CCHHHHH----HHHHHhCCChhhh-hhhhhhHHhhc
Q 045160 85 KKKKKGKLPKESRQTLLDWWNAHYKWPY-PTEADKL----QLAESTGLDQKQI-NNWFINQRKRH 143 (166)
Q Consensus 85 ~kr~r~~~~~~~~~~L~~~f~~h~~~pY-Ps~~ek~----~LA~~tgLs~~qV-~~WF~N~R~R~ 143 (166)
.++.+....++.-..|..|+.+...... |+..... .||..+|++.-.+ ..|+.+..+|+
T Consensus 66 ~kr~r~~~~~~~E~~L~~Wi~~~~~~g~pvs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 66 RKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred hcccCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 4555667788888999999986532232 5666554 4566677764444 55999998886
No 100
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=70.19 E-value=11 Score=25.17 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=34.5
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHhCCChhhhhhhhhhHHh
Q 045160 89 KGKLPKESRQTLLDWWNAHYKWPYPTE-ADKLQLAESTGLDQKQINNWFINQRK 141 (166)
Q Consensus 89 r~~~~~~~~~~L~~~f~~h~~~pYPs~-~ek~~LA~~tgLs~~qV~~WF~N~R~ 141 (166)
+.+|+.+.+......+..+- .-|++. .....+|+.+|++..+|.+|..-.+.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~ 56 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQHER 56 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 45789888764444443310 013332 45678999999999999999876544
No 101
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=69.30 E-value=7.8 Score=23.78 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=40.2
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 88 KKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 88 ~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
.-..|++.++.+|..+ .+ .+ .-.++|+.+|++...|..+....+.+.....
T Consensus 8 ~~~~L~~~e~~il~~~-~~----g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 58 (74)
T 1fse_A 8 SKPLLTKREREVFELL-VQ----DK----TTKEIASELFISEKTVRNHISNAMQKLGVKG 58 (74)
T ss_dssp CCCCCCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Confidence 3467899999998764 33 44 2357999999999999999999999887654
No 102
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=68.91 E-value=2.1 Score=32.18 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=39.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
..||+.++.+|...|.+ .++ -.++|+.+|++...|..+....|+++++.
T Consensus 186 ~~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFYE----ELP----AKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TTSCHHHHHHHHHHHTS----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhc----CCC----HHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 35899999999877654 332 34799999999999999999999998754
No 103
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=68.77 E-value=2.1 Score=31.30 Aligned_cols=49 Identities=10% Similarity=0.014 Sum_probs=39.1
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 91 KLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 91 ~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
.||+.++.+|.-.+.. .++ -.++|+.+|++...|.++....|+++++..
T Consensus 140 ~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 140 SLPEDLRMAITLRELD----GLS----YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HSCHHHHHHHHHHHTT----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHc----CCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4788888888766554 332 247999999999999999999999987654
No 104
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=66.44 E-value=4 Score=29.42 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=40.6
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCCC
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSEN 149 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~~ 149 (166)
..||+.++.+|.-.+.+ .++ -.++|+.+|++...|.+.....|+++++....
T Consensus 92 ~~Lp~~~r~vl~L~~~~----g~s----~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~ 143 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAME----GFS----PEDAAYLIEVDTSEVETLVTEALAEIEKQTRA 143 (157)
T ss_dssp TTSCTTHHHHHTTTSSS----CCC----HHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HhCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 46888888887644333 332 35799999999999999999999999987654
No 105
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=65.73 E-value=2.6 Score=29.38 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=38.9
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 91 KLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 91 ~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
.||+.++.++...|.. .++ -.++|+.+|++...|.++....|++.++.
T Consensus 25 ~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE----DYS----LSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTS----CCC----HHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4889999998776555 332 35799999999999999999999987754
No 106
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=65.15 E-value=1.9 Score=31.38 Aligned_cols=48 Identities=21% Similarity=0.202 Sum_probs=38.5
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 91 KLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 91 ~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
.||+.++.+|.-.+.+. .+| .++|+.+|++...|.++....|+++++.
T Consensus 135 ~L~~~~r~vl~l~~~~g--~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGD--LTH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp TSCHHHHHHHHHHHHSC--CSS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--CCH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 48899999998766653 232 2699999999999999999999987653
No 107
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=64.44 E-value=4.1 Score=25.79 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 56899999999999999998754
No 108
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=63.30 E-value=3.7 Score=24.44 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998753
No 109
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=63.22 E-value=4 Score=23.06 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=27.4
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 045160 91 KLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFIN 138 (166)
Q Consensus 91 ~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N 138 (166)
.++.+....+...+.. .. ....+|+.+|++...|..|+..
T Consensus 5 ~~~~~~~~~i~~l~~~----g~----s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 5 AINKHEQEQISRLLEK----GH----PRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SSCTTHHHHHHHHHHT----TC----CHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHc----CC----CHHHHHHHHCCCHHHHHHHHHH
Confidence 4555555544444444 22 2458999999999999999864
No 110
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=62.57 E-value=17 Score=23.92 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhH
Q 045160 96 SRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 96 ~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~ 139 (166)
....+..+..+|+..+-++. ..||+.+|+++..+...|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~---~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTL---SVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCH---HHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCH---HHHHHHHCcCHHHHHHHHHHH
Confidence 44566788888877655554 468899999999988888654
No 111
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=62.30 E-value=4 Score=24.45 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhH
Q 045160 118 KLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~ 139 (166)
...||+.+|++...|..|..+.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~ 42 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSE 42 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCCCHHHHHHHHcCC
Confidence 4679999999999999999874
No 112
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=61.92 E-value=7.6 Score=23.07 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=26.1
Q ss_pred HHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 119 LQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 119 ~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
.++|+.+|++...|.++..+.+.+.....
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 48999999999999999999999987764
No 113
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=61.42 E-value=4.1 Score=24.69 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhHHh
Q 045160 118 KLQLAESTGLDQKQINNWFINQRK 141 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R~ 141 (166)
...||+.+|++...|..|..+.+.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999987543
No 114
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=59.49 E-value=6.6 Score=26.88 Aligned_cols=55 Identities=11% Similarity=0.081 Sum_probs=41.4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCC
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSE 148 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~ 148 (166)
..||+.++.++.-.|.. +.+ ..-.-.++|..+|++...|++.....++++++...
T Consensus 18 ~~Lp~reR~Vi~Lry~l---~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~ 72 (99)
T 3t72_q 18 AGLTAREAKVLRMRFGI---DMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 72 (99)
T ss_pred HcCCHHHHHHHHHHHhc---CCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 35888899998877653 111 11234579999999999999999999999887753
No 115
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=58.00 E-value=5.3 Score=24.57 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999998754
No 116
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=57.72 E-value=5.2 Score=24.52 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998743
No 117
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=57.41 E-value=2.2 Score=32.06 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcC
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHW 144 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~k 144 (166)
..||+.++.+|...|.. . -.-.++|+.+|++...|..+....|++++
T Consensus 197 ~~L~~~~r~vl~l~~~~----g----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 197 EELDERERLIVYLRYYK----D----QTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp -------------------------------------------------------
T ss_pred HhCCHHHHHHHHHHHhc----C----CCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 35788888888765554 2 23458999999999999999988887754
No 118
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=56.73 E-value=5.6 Score=23.88 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhHHh
Q 045160 118 KLQLAESTGLDQKQINNWFINQRK 141 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R~ 141 (166)
...||+.+|++...|..|..+.+.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999887543
No 119
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=56.68 E-value=5.6 Score=24.50 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46799999999999999997753
No 120
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=55.76 E-value=8.1 Score=24.46 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|..+.+
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998743
No 121
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=55.22 E-value=6.1 Score=24.39 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|..+.+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999998765
No 122
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=55.07 E-value=6 Score=24.39 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhH
Q 045160 118 KLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~ 139 (166)
...||+.+|++...|..|..+.
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4579999999999999999875
No 123
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=54.35 E-value=14 Score=28.79 Aligned_cols=49 Identities=10% Similarity=0.022 Sum_probs=40.4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
..||+.++.+|.-.+ + .++ -.++|+.+|++...|.+...+.|++++...
T Consensus 196 ~~L~~~erevl~L~~-~----G~s----~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 196 NILSEREKEILRCIR-K----GLS----SKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp TSSCHHHHHHHHHHH-T----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHH-c----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 579999999997753 4 332 347999999999999999999999988764
No 124
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=53.67 E-value=7.4 Score=24.86 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999998865
No 125
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=53.63 E-value=6.8 Score=23.82 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhH
Q 045160 118 KLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~ 139 (166)
...||+.+|++...|..|..+.
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4579999999999999999775
No 126
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=53.08 E-value=6.5 Score=24.81 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|..+++
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 45799999999999999997754
No 127
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=51.99 E-value=8.4 Score=23.57 Aligned_cols=19 Identities=16% Similarity=0.529 Sum_probs=17.6
Q ss_pred HHHHHHHhCCChhhhhhhh
Q 045160 118 KLQLAESTGLDQKQINNWF 136 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF 136 (166)
...||+.+|++..-|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4689999999999999998
No 128
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=50.28 E-value=17 Score=24.85 Aligned_cols=43 Identities=9% Similarity=0.021 Sum_probs=31.9
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHH
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R 140 (166)
..++.+.+..+...+.. .+ ....+|+.+|++...|..|+...+
T Consensus 5 ~~~s~~~r~~i~~~~~~----G~----s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL----NV----SLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp CCCCHHHHHHHHHHHHT----TC----CHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred ccCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHccc
Confidence 56788877766665544 33 245789999999999999997654
No 129
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=50.08 E-value=8 Score=25.22 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|..+.+
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 45799999999999999998753
No 130
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=49.44 E-value=8.6 Score=24.03 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998753
No 131
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=49.27 E-value=8.9 Score=24.87 Aligned_cols=23 Identities=4% Similarity=0.099 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|..+.+
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46899999999999999998753
No 132
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=48.73 E-value=8 Score=24.09 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|-.+.+
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45799999999999999987743
No 133
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=48.28 E-value=13 Score=24.00 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChhhhhhhhhh
Q 045160 118 KLQLAESTGLDQKQINNWFIN 138 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N 138 (166)
...||+.+|+++.-|..|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 678999999999999999864
No 134
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=46.41 E-value=11 Score=21.90 Aligned_cols=20 Identities=15% Similarity=0.454 Sum_probs=17.6
Q ss_pred HHHHHHHhCCChhhhhhhhh
Q 045160 118 KLQLAESTGLDQKQINNWFI 137 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~ 137 (166)
..++|+.+|++...|..|+.
T Consensus 34 ~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 34 VQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45799999999999999975
No 135
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=46.39 E-value=23 Score=23.39 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=38.1
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCC
Q 045160 87 KKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKP 146 (166)
Q Consensus 87 r~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~ 146 (166)
.....|+...+.+|.-.. + .+ .-.++|..+|++...|.+...+.++|..-.
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-~----G~----s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-K----GF----TNQEIADALHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp ----CCCHHHHHHHHHHH-T----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccccCCCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 445679999999997554 4 33 245899999999999999999999887654
No 136
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=46.27 E-value=25 Score=23.33 Aligned_cols=44 Identities=7% Similarity=0.114 Sum_probs=32.2
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHh
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRK 141 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~ 141 (166)
..++.+.+..+...+.. .+ + ...+|+.+|++...|..|+...+.
T Consensus 16 ~~~s~~~r~~i~~~~~~----g~-s---~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAAD----GI-R---PCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp SCCCHHHHHHHHHHHHT----TC-C---HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHc----CC-C---HHHHHHHHCcCHHHHHHHHHHHHh
Confidence 35888877766555544 33 2 357899999999999999987654
No 137
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=45.93 E-value=10 Score=23.77 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|-.+.+
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 35799999999999999998753
No 138
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=45.51 E-value=11 Score=24.19 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=18.0
Q ss_pred HHHHHHHhCCChhhhhhhhhh
Q 045160 118 KLQLAESTGLDQKQINNWFIN 138 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N 138 (166)
...||+.+|++...|.+|..+
T Consensus 25 ~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 25 LSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 346999999999999999663
No 139
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=45.21 E-value=11 Score=24.22 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhH
Q 045160 118 KLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~ 139 (166)
...||+.+|++...|..|..+.
T Consensus 33 q~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4689999999999999999874
No 140
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=43.69 E-value=79 Score=21.91 Aligned_cols=49 Identities=8% Similarity=-0.012 Sum_probs=32.5
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCHHHHHH-HHHHh----C--CChhhhhhhhhhHH
Q 045160 89 KGKLPKESRQTLLDWWNAHYKWPYPTEADKLQ-LAEST----G--LDQKQINNWFINQR 140 (166)
Q Consensus 89 r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~-LA~~t----g--Ls~~qV~~WF~N~R 140 (166)
+..++.+....+..++.+ +|.-+..+... |.... | ++...|..|+....
T Consensus 88 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~ 143 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQ---NPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKV 143 (149)
T ss_dssp CSSSCHHHHHHHHHHHHH---CTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHh---CcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHh
Confidence 456888888888888888 66666554322 22211 5 78899999986543
No 141
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=43.52 E-value=12 Score=24.87 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhH
Q 045160 118 KLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~ 139 (166)
..+||+.+|++...|..|..++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~ 61 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNE 61 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4689999999999999999884
No 142
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=43.12 E-value=12 Score=24.27 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|..+.+
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999998754
No 143
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=42.23 E-value=13 Score=23.88 Aligned_cols=41 Identities=12% Similarity=0.036 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHH
Q 045160 93 PKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 93 ~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R 140 (166)
.......|+..-.. .. -+ ...||+.+|++...|..|..+.+
T Consensus 11 ~~~~~~~l~~~r~~---~g-ls---q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 11 TLEVGKVIQQGRQS---KG-LT---QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp CCHHHHHHHHHHHT---TT-CC---HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHH---cC-CC---HHHHHHHHCcCHHHHHHHHcCCC
Confidence 33445555555444 22 22 45799999999999999998753
No 144
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=41.80 E-value=13 Score=23.25 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChhhhhhhhhhH
Q 045160 118 KLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~ 139 (166)
...||+.+|++...|..|-.+.
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHhCcCHHHHHHHHCCC
Confidence 4579999999999999998775
No 145
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=40.81 E-value=14 Score=23.31 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=18.9
Q ss_pred HHHHHHHhCCChhhhhhhhhh
Q 045160 118 KLQLAESTGLDQKQINNWFIN 138 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N 138 (166)
...||+.+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 457999999999999999987
No 146
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=40.63 E-value=14 Score=22.20 Aligned_cols=22 Identities=5% Similarity=0.016 Sum_probs=19.3
Q ss_pred HHHHHHHhC--CChhhhhhhhhhH
Q 045160 118 KLQLAESTG--LDQKQINNWFINQ 139 (166)
Q Consensus 118 k~~LA~~tg--Ls~~qV~~WF~N~ 139 (166)
...||+.+| ++...|..|-.+.
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~ 47 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGD 47 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTC
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCC
Confidence 457999999 9999999999875
No 147
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=40.48 E-value=61 Score=21.23 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhH
Q 045160 96 SRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 96 ~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~ 139 (166)
....+..+...|+..+ ++ ...||+.+|+++..+...|...
T Consensus 3 ~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRP-IT---IEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHTTSC-CC---HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCC-CC---HHHHHHHHCCCHHHHHHHHHHH
Confidence 3455667888876665 44 4568899999999988877654
No 148
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=39.96 E-value=33 Score=23.96 Aligned_cols=44 Identities=9% Similarity=0.119 Sum_probs=32.4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHh
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRK 141 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~ 141 (166)
..|+.+.+......+.. .+ + ...+|+.+|++...|..|+...+.
T Consensus 31 ~~~s~e~r~~iv~~~~~----G~-s---~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQ----GV-R---PCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp SCCCHHHHHHHHHHHHT----TC-C---HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc----CC-C---HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46888887766555543 33 2 457899999999999999987654
No 149
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=38.23 E-value=40 Score=22.25 Aligned_cols=47 Identities=9% Similarity=-0.012 Sum_probs=29.5
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCC-------Chhhhhhhhhh
Q 045160 89 KGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGL-------DQKQINNWFIN 138 (166)
Q Consensus 89 r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgL-------s~~qV~~WF~N 138 (166)
...++.+....+..++.+ +|.-+..+........|+ +...|..|+..
T Consensus 73 ~~~l~~~~~~~i~~~~~~---~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 73 PRIATPEIENRIEEYKRS---SPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CCSSCSTHHHHHHHTTTT---CTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CCcCCHHHHHHHHHHHHh---CcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 356777777777777766 676666554333223374 88889988753
No 150
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=38.22 E-value=16 Score=23.05 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|-.+.+
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45899999999999999998754
No 151
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=37.14 E-value=21 Score=30.87 Aligned_cols=53 Identities=13% Similarity=-0.009 Sum_probs=40.6
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcC-CCC
Q 045160 91 KLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHW-KPS 147 (166)
Q Consensus 91 ~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~k-k~~ 147 (166)
.|+...+.+|...|.-+ .. ....-.+||..+|++...|+......+++++ .+.
T Consensus 375 ~L~ereR~VI~LRygL~--~~--e~~TleEIAe~LgIS~erVRqi~~RAlkKLR~~~~ 428 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLI--DG--REHTLEEVGAYFGVTRERIRQIENKALRKLKYHES 428 (438)
T ss_pred hCCHHHHHHHHHHHhcc--CC--CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHhHh
Confidence 58888999998777521 11 1234568999999999999999999999998 443
No 152
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=36.77 E-value=64 Score=21.39 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhH
Q 045160 96 SRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 96 ~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~ 139 (166)
....+..+...|+..+ ++ ...||+.+|+++..+...|...
T Consensus 8 ~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEANIEEP-LS---TDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHTCSSSC-CC---HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCC-CC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 3445667888876666 44 4568888999998888777643
No 153
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=36.49 E-value=19 Score=32.23 Aligned_cols=56 Identities=9% Similarity=0.089 Sum_probs=43.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCCCC
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPSEN 149 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~~~ 149 (166)
..||+..+.+|...|.......| .-.++|+.+|++...|+++....+++++++...
T Consensus 549 ~~Lp~~er~Vl~Lr~~~~~~e~~----s~~EIA~~lgis~~tVk~~~~rAl~kLR~~~~~ 604 (613)
T 3iyd_F 549 AGLTAREAKVLRMRFGIDMNTDH----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 (613)
T ss_dssp TSSCHHHHHHHHHHHTSSSCCCC----STTGGGTTTSSCSSHHHHHHHHHHTTTTSCSSS
T ss_pred HcCCHHHHHHHHHHhccCCCCCc----CHHHHHHHhCCCHHHHHHHHHHHHHHhhCcchh
Confidence 47899999999888762110122 234799999999999999999999999998753
No 154
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=35.77 E-value=21 Score=21.33 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=18.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhH
Q 045160 118 KLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~ 139 (166)
...+|+.+|++...|..|..+.
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~~ 37 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRAG 37 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4579999999999999999543
No 155
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=35.76 E-value=22 Score=30.33 Aligned_cols=52 Identities=12% Similarity=-0.029 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcC-CC
Q 045160 91 KLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHW-KP 146 (166)
Q Consensus 91 ~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~k-k~ 146 (166)
.||...+.+|...|.-. .. ....-.++|+.+|+|...|+.+....+++++ .+
T Consensus 360 ~L~~rer~Vl~lr~~L~--~~--e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR~~~ 412 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLI--DG--REHTLEEVGAFFGVTRERIRQIENKALRKLKYHE 412 (423)
T ss_dssp SSCHHHHHHHHHHHHTT--CC-------CHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccC--CC--CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhhh
Confidence 58899999998777520 11 1345668999999999999999999999988 44
No 156
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=35.63 E-value=39 Score=23.97 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=31.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHH
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R 140 (166)
..++.+.+..+...+.. .+ ....+|+.+|++...|..|+...+
T Consensus 24 ~~~s~e~r~~ii~l~~~----G~----s~~~IA~~lgis~~TV~rwl~r~~ 66 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQ----GV----RPCDISRQLRVSHGCVSKILGRYY 66 (159)
T ss_dssp CSSCHHHHHHHHHHHHH----TC----CHHHHHHHHTCCSHHHHHHHCCSS
T ss_pred CCCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46888887766666655 22 244789999999999999997543
No 157
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=35.41 E-value=32 Score=26.20 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=39.4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 89 KGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 89 r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
...||+..+.+|. |+.+ .+. -.++|+.+|++...|++...|.++|..-..
T Consensus 173 ~~~Lt~~e~~vl~-~~~~----g~s----~~eIa~~l~is~~tV~~~~~~~~~kl~~~~ 222 (236)
T 2q0o_A 173 KQMLSPREMLCLV-WASK----GKT----ASVTANLTGINARTVQHYLDKARAKLDAES 222 (236)
T ss_dssp GGSCCHHHHHHHH-HHHT----TCC----HHHHHHHHCCCHHHHHHHHHHHHHHHTCSS
T ss_pred cCCCCHHHHHHHH-HHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHhCCCC
Confidence 4579999999985 4444 332 257899999999999999999999976553
No 158
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=35.34 E-value=18 Score=22.45 Aligned_cols=41 Identities=10% Similarity=-0.021 Sum_probs=28.6
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHH
Q 045160 90 GKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R 140 (166)
+.++.+....++.. .. -| ...||+.+|++...|..|=.+.+
T Consensus 9 ~~~~g~~lr~~R~~------~g-lt---q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKK------LS-LT---QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHH------TT-CC---HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHH------cC-CC---HHHHHHHhCcCHHHHHHHHcCCC
Confidence 45666666555533 12 12 45799999999999999988754
No 159
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=35.26 E-value=19 Score=24.10 Aligned_cols=23 Identities=13% Similarity=0.292 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|-.+.+
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999998753
No 160
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=34.96 E-value=74 Score=21.47 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=31.5
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC--CChhhhhhhhhhHHh
Q 045160 89 KGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTG--LDQKQINNWFINQRK 141 (166)
Q Consensus 89 r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tg--Ls~~qV~~WF~N~R~ 141 (166)
...++.+....+... .. +|.-+. ..||..+| ++...|..|+....-
T Consensus 58 ~~~l~~~~~~~i~~~-~~---~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 58 RKALSVRDERNVIRA-AS---NSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CCSSCHHHHHHHHHH-HH---HCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CCcCCHHHHHHHHHH-Hh---CCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 346888887767666 44 455454 35777788 789999999976543
No 161
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=34.91 E-value=22 Score=22.18 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..++.+.+
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998865
No 162
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=34.59 E-value=19 Score=23.71 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|..+.+
T Consensus 34 q~~lA~~~gis~~~is~~e~g~~ 56 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQR 56 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCc
Confidence 46899999999999999998753
No 163
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=34.38 E-value=20 Score=23.64 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChhhhhhhhhh
Q 045160 118 KLQLAESTGLDQKQINNWFIN 138 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N 138 (166)
...||+.+|++...|..|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 457999999999999999987
No 164
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=34.29 E-value=87 Score=22.13 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=37.1
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHH----HHHHh----CCChhh-hhhhhhhHHhhc
Q 045160 84 SKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQ----LAEST----GLDQKQ-INNWFINQRKRH 143 (166)
Q Consensus 84 ~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~----LA~~t----gLs~~q-V~~WF~N~R~R~ 143 (166)
..++.+....++.-..|..|+.+...+.-.|...... +|..+ |.+.-. -+.|+.+.++|+
T Consensus 73 ~~kr~r~~~~~~le~~L~~Wi~~~~~~~~it~~~I~~kA~~i~~~l~~~~~~~~f~~S~GWL~~Fk~Rh 141 (144)
T 1iuf_A 73 DVKRNRPPKYPLLEAALFEWQVQQGDDATLSGETIKRAAAILWHKIPEYQDQPVPNFSNGWLEGFRKRH 141 (144)
T ss_dssp SSSCCCCCSCHHHHHHHHHHHHHTCTTCCCSSHHHHHHHHHHHHHCSSSSCCCCCSCCSHHHHHHHHHT
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCCCCCCcCHHHHHHHHHHc
Confidence 3445555666788889999999832344456555444 44444 333333 345999988885
No 165
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=33.88 E-value=39 Score=26.53 Aligned_cols=50 Identities=8% Similarity=0.150 Sum_probs=39.6
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 89 KGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 89 r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
...|++..+.+|. |+.+ .+ .-.++|+.+|++...|+....|.++|..-..
T Consensus 195 ~~~Lt~re~~vl~-~~~~----G~----s~~eIA~~l~is~~TV~~~~~~~~~kl~~~~ 244 (265)
T 3qp6_A 195 NMPLSQREYDIFH-WMSR----GK----TNWEIATILNISERTVKFHVANVIRKLNANN 244 (265)
T ss_dssp CCCCCHHHHHHHH-HHHT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred cCCCCHHHHHHHH-HHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCCC
Confidence 4579999999995 4444 33 2357999999999999999999999976654
No 166
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=33.70 E-value=23 Score=26.73 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=9.9
Q ss_pred HHHHHhCCChhhhhhhhhh
Q 045160 120 QLAESTGLDQKQINNWFIN 138 (166)
Q Consensus 120 ~LA~~tgLs~~qV~~WF~N 138 (166)
.||+.+|++...|..|..+
T Consensus 35 ~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 35 SVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp HHHHHHTSCHHHHHHHTTT
T ss_pred HHHHHHCcCHHHHHHHHcC
Confidence 4555555555555555543
No 167
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=33.40 E-value=20 Score=24.54 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|-.+.+
T Consensus 28 q~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 45799999999999999998763
No 168
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=33.21 E-value=45 Score=22.49 Aligned_cols=40 Identities=8% Similarity=-0.024 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhh
Q 045160 94 KESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFI 137 (166)
Q Consensus 94 ~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~ 137 (166)
......+..+...|+..+ + ....||+.+|++...+...|.
T Consensus 6 ~~~~~~~~~~i~~~~~~~-~---~~~~lA~~~~~S~~~l~r~fk 45 (120)
T 3mkl_A 6 PNMRTRVCTVINNNIAHE-W---TLARIASELLMSPSLLKKKLR 45 (120)
T ss_dssp CCHHHHHHHHHHTSTTSC-C---CHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC-C---CHHHHHHHHCcCHHHHHHHHH
Confidence 345666778888875554 2 356789999999999988874
No 169
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=33.10 E-value=21 Score=23.87 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|-.+.+
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45899999999999999998743
No 170
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=32.87 E-value=21 Score=22.80 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|-.+.+
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 35799999999999999987754
No 171
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=32.70 E-value=37 Score=25.78 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=39.6
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcCCCC
Q 045160 88 KKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKRHWKPS 147 (166)
Q Consensus 88 ~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R~kk~~ 147 (166)
....||+..+.+|. |+.+ .+ .-.++|+.+|++...|++...|.++|..-..
T Consensus 170 ~~~~Lt~~e~~vl~-~~~~----g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~ 220 (234)
T 1l3l_A 170 DAAWLDPKEATYLR-WIAV----GK----TMEEIADVEGVKYNSVRVKLREAMKRFDVRS 220 (234)
T ss_dssp CCCCCCHHHHHHHH-HHTT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCCHHHHHHHH-HHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCCC
Confidence 45679999999985 4433 33 2357899999999999999999999976543
No 172
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=32.37 E-value=71 Score=22.73 Aligned_cols=50 Identities=18% Similarity=0.068 Sum_probs=35.7
Q ss_pred CCCChHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhh
Q 045160 90 GKLPKESRQTLLDWWNAH-YKWPYPTEADKLQLAESTGLDQKQINNWFINQRKR 142 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h-~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R 142 (166)
-.++.....+|...+..+ -.+++|+.. .||+.+|++..+|.....+--.+
T Consensus 28 LgLs~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 28 LGLNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp HTCCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHHHHC
Confidence 356666665554444422 236999986 59999999999999998876655
No 173
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=32.24 E-value=23 Score=23.25 Aligned_cols=22 Identities=5% Similarity=0.229 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChhhhhhhhhhH
Q 045160 118 KLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~ 139 (166)
...||+.+|++...|..|-.+.
T Consensus 46 q~elA~~lgvs~~~is~~E~G~ 67 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGR 67 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHhCcCHHHHHHHHcCC
Confidence 4579999999999999998764
No 174
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=32.18 E-value=23 Score=24.07 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChhhhhhhhhhH
Q 045160 118 KLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~ 139 (166)
...||+.+|++...|..|-.+.
T Consensus 39 q~elA~~~gis~~~is~~E~G~ 60 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDS 60 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4579999999999999999875
No 175
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=31.77 E-value=23 Score=23.85 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|-.+.+
T Consensus 52 q~elA~~~gis~~~is~~E~G~~ 74 (107)
T 2jvl_A 52 QAELGKEIGETAATVASYERGTA 74 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998754
No 176
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=31.70 E-value=22 Score=23.93 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|-.+++
T Consensus 37 q~elA~~~gis~~~is~~E~G~~ 59 (114)
T 3vk0_A 37 QEELARQCGLDRTYVSAVERKRW 59 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999987754
No 177
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=31.37 E-value=62 Score=21.26 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhH
Q 045160 96 SRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 96 ~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~ 139 (166)
....+..+...|+..+ + ....||+.+|+++..+...|...
T Consensus 6 ~i~~~~~~i~~~~~~~-~---~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 6 IIQNVLSYITEHFSEG-M---SLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHHTTSC-C---CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-C---CHHHHHHHHCcCHHHHHHHHHHH
Confidence 3445667788875554 2 35578888999998888877543
No 178
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=30.19 E-value=25 Score=23.33 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChhhhhhhhhhH
Q 045160 118 KLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~ 139 (166)
...||+.+|++...|..|-.++
T Consensus 44 q~elA~~~gis~~~is~iE~G~ 65 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNS 65 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4589999999999999998775
No 179
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=29.67 E-value=1.1e+02 Score=19.83 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 045160 97 RQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFIN 138 (166)
Q Consensus 97 ~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N 138 (166)
...+..+..+|+.++-++ ...||+.+|++...+..-|..
T Consensus 5 i~~~~~~i~~~~~~~~~~---~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 5 VREACQYISDHLADSNFD---IASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHTSSCSSCC---HHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCC---HHHHHHHHCCCHHHHHHHHHH
Confidence 344567888876533234 446898999999888877764
No 180
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=28.86 E-value=16 Score=26.23 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=21.7
Q ss_pred HHHHHHHHHhCCChhhhhhhhhhHHh
Q 045160 116 ADKLQLAESTGLDQKQINNWFINQRK 141 (166)
Q Consensus 116 ~ek~~LA~~tgLs~~qV~~WF~N~R~ 141 (166)
+-+..+|+.+|++..+++.|....|.
T Consensus 70 ~~~~~va~~lg~~~~~~RlW~~~~Rq 95 (130)
T 2kvr_A 70 EFVQSLSQTMGFPQDQIRLWPMQARS 95 (130)
T ss_dssp HHHHHHHHHHCCCGGGCEEEECCCCB
T ss_pred HHHHHHHHHhCCCcccEEEEEeecCC
Confidence 34678999999999999999886664
No 181
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=28.72 E-value=35 Score=20.95 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=18.4
Q ss_pred HHHHHHHhCCChhhhhhhhhh
Q 045160 118 KLQLAESTGLDQKQINNWFIN 138 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N 138 (166)
..++|+.+|++...|..|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 457999999999999999865
No 182
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=28.31 E-value=27 Score=23.46 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|-.+.+
T Consensus 44 q~~lA~~~gis~~~is~~E~g~~ 66 (117)
T 3f52_A 44 LRELAEASRVSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45899999999999999987764
No 183
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=28.22 E-value=28 Score=23.53 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|-.++|
T Consensus 30 q~eLA~~lGis~~~is~ie~G~~ 52 (104)
T 3trb_A 30 ANQLAKHLAIPTNRVTAILNGAR 52 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998764
No 184
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=27.53 E-value=31 Score=22.43 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhh----hhhhhhhH
Q 045160 118 KLQLAESTGLDQKQ----INNWFINQ 139 (166)
Q Consensus 118 k~~LA~~tgLs~~q----V~~WF~N~ 139 (166)
...||+.+|++... |..|-.+.
T Consensus 17 q~~lA~~~gis~~~~~~~is~~E~g~ 42 (98)
T 3lfp_A 17 QEKLGVLAGIDEASASARMNQYEKGK 42 (98)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCcchhhhHHHHHHCCC
Confidence 45899999999999 99998875
No 185
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=27.43 E-value=35 Score=22.83 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCChhhhhhhhh
Q 045160 116 ADKLQLAESTGLDQKQINNWFI 137 (166)
Q Consensus 116 ~ek~~LA~~tgLs~~qV~~WF~ 137 (166)
--...+|+..|++..+|+.|=.
T Consensus 25 ~gQ~~vAe~~GvdeStISR~k~ 46 (83)
T 1zs4_A 25 LGTEKTAEAVGVDKSQISRWKR 46 (83)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHH
T ss_pred HhhHHHHHHhCCCHHHHhhhhh
Confidence 3456899999999999999744
No 186
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=26.26 E-value=46 Score=24.71 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=30.4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHhCCChhhhhhhhh
Q 045160 89 KGKLPKESRQTLLDWWNAHYKWPYPT-EADKLQLAESTGLDQKQINNWFI 137 (166)
Q Consensus 89 r~~~~~~~~~~L~~~f~~h~~~pYPs-~~ek~~LA~~tgLs~~qV~~WF~ 137 (166)
+++|+.+.+......-..-+..|+.. .-....+|+.+|++...+.+|-.
T Consensus 21 ~r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 35688888776543322211122111 12567899999999999999976
No 187
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=26.15 E-value=26 Score=22.38 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=17.1
Q ss_pred HHHHHHHhCCChhhhhhhhh
Q 045160 118 KLQLAESTGLDQKQINNWFI 137 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~ 137 (166)
..++|+.+|++...|..|-.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35789999999999999944
No 188
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=25.63 E-value=1.1e+02 Score=18.68 Aligned_cols=37 Identities=8% Similarity=0.034 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 045160 99 TLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFIN 138 (166)
Q Consensus 99 ~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N 138 (166)
.+..|..- .-.|+......||..+|++...+.-|+..
T Consensus 41 ~is~~e~g---~~~~~~~~~~~ia~~l~v~~~~l~~~l~~ 77 (80)
T 3kz3_A 41 AVAALFNG---INALNAYNAALLAKILKVSVEEFSPSIAR 77 (80)
T ss_dssp HHHHHHTT---SSCCCHHHHHHHHHHHTSCGGGTCHHHHH
T ss_pred HHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHhHHHHh
Confidence 34444443 45689999999999999999998888754
No 189
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=25.32 E-value=31 Score=21.64 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhhhhhhhhH
Q 045160 118 KLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~ 139 (166)
...||+..|++...|..++.|.
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~~ 33 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMNP 33 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHcCC
Confidence 5789999999999999999875
No 190
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=24.54 E-value=82 Score=23.18 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=29.3
Q ss_pred CCChHHHHHH---HHHHHHhcCCCC-CCHHHHHHHHHHhCCC-hhhhhhhhhhHH
Q 045160 91 KLPKESRQTL---LDWWNAHYKWPY-PTEADKLQLAESTGLD-QKQINNWFINQR 140 (166)
Q Consensus 91 ~~~~~~~~~L---~~~f~~h~~~pY-Ps~~ek~~LA~~tgLs-~~qV~~WF~N~R 140 (166)
.++..+..++ +....+ ..+ || ..+||+.+|++ ...|..|...-.
T Consensus 3 ~lt~~q~~i~~~i~~~~~~---~g~~ps---~~elA~~lgiss~~tv~~~~~~l~ 51 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQ---TGMPPT---RAEIAQRLGFRSPNAAEEHLKALA 51 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHH---HSSCCC---HHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHH---hCCCcc---HHHHHHHhCCCChHHHHHHHHHHH
Confidence 3566655443 444445 455 35 44799999999 899999986433
No 191
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=24.31 E-value=36 Score=24.25 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|..+.+
T Consensus 84 q~elA~~lGis~s~is~~E~G~~ 106 (141)
T 3kxa_A 84 QSELATAAGLPQPYLSRIENSKQ 106 (141)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999998763
No 192
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=24.19 E-value=45 Score=22.50 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.4
Q ss_pred HHHHHHHhCCChhhhhhhhhh
Q 045160 118 KLQLAESTGLDQKQINNWFIN 138 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N 138 (166)
...||+.+|++...|..|=.+
T Consensus 52 Q~eLA~~~gvs~~~is~~E~G 72 (101)
T 4ghj_A 52 QSEVAEIAGIARKTVLNAEKG 72 (101)
T ss_dssp HHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHCC
Confidence 457999999999999999765
No 193
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=24.16 E-value=1e+02 Score=20.94 Aligned_cols=42 Identities=17% Similarity=0.379 Sum_probs=29.7
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 045160 93 PKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFIN 138 (166)
Q Consensus 93 ~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N 138 (166)
.......+..+...|+..+ ++ ...||+.+|++...+..-|..
T Consensus 9 ~~~~i~~~~~~i~~~~~~~-~s---l~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 9 DAITIHSILDWIEDNLESP-LS---LEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp CHHHHHHHHHHHHTTTTSC-CC---CHHHHHHSSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCCC-CC---HHHHHHHHCcCHHHHHHHHHH
Confidence 4455666778888876666 33 456888888888888777754
No 194
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=24.04 E-value=19 Score=21.37 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhh
Q 045160 92 LPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRKR 142 (166)
Q Consensus 92 ~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~R 142 (166)
.+.+.-+.|+.+..+| .-.+.+...+-|.++||...-|..+|...-.|
T Consensus 4 wseeverklkefvrrh---qeitqetlheyaqklglnqqaieqffrefeqr 51 (52)
T 1y66_A 4 WSEEVERKLKEFVRRH---QEITQETLHEYAQKLGLNQQAIEQFFREFEQR 51 (52)
T ss_dssp CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCccHHHHHHHHHHHHhc
Confidence 4566777888888774 54667788889999999999999998765444
No 195
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=23.38 E-value=36 Score=24.75 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCChhhhhhhhhhH
Q 045160 117 DKLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 117 ek~~LA~~tgLs~~qV~~WF~N~ 139 (166)
...+||+.+|++...|..|..+.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g~ 44 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTRG 44 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHSS
T ss_pred CHHHHHHHhCcCHHHHHHHHhCC
Confidence 46689999999999999998754
No 196
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=23.27 E-value=39 Score=23.42 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
..+||+.+|++...|..|..+++
T Consensus 56 Q~eLA~~lGis~~~Is~iE~G~~ 78 (120)
T 2o38_A 56 QAAAAARLGINQPKVSALRNYKL 78 (120)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999988754
No 197
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=22.88 E-value=72 Score=24.00 Aligned_cols=36 Identities=8% Similarity=-0.020 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhh
Q 045160 95 ESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQIN 133 (166)
Q Consensus 95 ~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~ 133 (166)
....+|... +++ ..|.+.+....+|+.+||+..+|-
T Consensus 26 ~li~~L~~~-Q~~--~G~l~~~~~~~iA~~l~l~~~~V~ 61 (181)
T 3i9v_2 26 AIMPLLRRV-QQE--EGWIRPERIEEIARLVGTTPTEVM 61 (181)
T ss_dssp GHHHHHHHH-HHH--HSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHH-HHH--hCCCCHHHHHHHHHHhCcCHHHHH
Confidence 344555444 433 589999999999999999999973
No 198
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=22.43 E-value=41 Score=23.13 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|+.|-.+++
T Consensus 87 q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 44799999999999999998754
No 199
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=22.34 E-value=47 Score=22.43 Aligned_cols=48 Identities=4% Similarity=0.016 Sum_probs=31.1
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHh
Q 045160 87 KKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQRK 141 (166)
Q Consensus 87 r~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~ 141 (166)
..+++++.+.+...-..... . .....++|+..||+..+|..|-.-.+.
T Consensus 28 ~~~rrWs~~~Kl~VV~~~~~----g---~~s~~e~arry~Is~s~i~~W~r~~~~ 75 (95)
T 2jrt_A 28 LDTRRWVASRKAAVVKAVIH----G---LITEREALDRYSLSEEEFALWRSAVAA 75 (95)
T ss_dssp SSCCCCCHHHHHHHHHHHHT----T---SSCHHHHHHHTTCCHHHHHHHHHHTTT
T ss_pred HhhhccCHHHHHHHHHHHHc----C---CCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34455777665533333333 1 233558999999999999999866543
No 200
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=22.31 E-value=81 Score=22.09 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHhCCChhhhhhhhhhHHh
Q 045160 111 PYPTEADKLQLAESTGLDQKQINNWFINQRK 141 (166)
Q Consensus 111 pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R~ 141 (166)
...++.+...|+..++++..+|..||...-.
T Consensus 6 s~l~~~~l~~l~~~~~~~~~~i~~~f~~fd~ 36 (193)
T 1bjf_A 6 SKLRPEVMQDLLESTDFTEHEIQEWYKGFLR 36 (193)
T ss_dssp CCCCHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4567778888888999999999999886644
No 201
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=22.25 E-value=2.9e+02 Score=21.84 Aligned_cols=70 Identities=17% Similarity=0.167 Sum_probs=46.9
Q ss_pred HHhhhcCCccchhhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh-CCChhhhhhhhhhHHhhcC
Q 045160 68 LLRKFGSHIGSLKLEFSKKKKKGKLPKESRQTLLDWWNAHYKWPYPTEADKLQLAEST-GLDQKQINNWFINQRKRHW 144 (166)
Q Consensus 68 l~~~~~~~~~~~~~~~~~kr~r~~~~~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~t-gLs~~qV~~WF~N~R~R~k 144 (166)
|...+...+..++......+....++.+-...+...+..|=.+ =..||+.. +=|..||.+.|.|.++|..
T Consensus 112 L~~~~~~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKD-------W~~IAk~VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 112 LKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRD-------FQAISDVIGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp HHHHSTTTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSC-------HHHHHHHHSSCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHhhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcC-------HHHHHHHcCCCCHHHHHHHHHHHHHHhh
Confidence 3344555555555555556677889999998888888874111 22445444 4699999999888888743
No 202
>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A
Probab=22.18 E-value=98 Score=20.67 Aligned_cols=44 Identities=16% Similarity=0.408 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhH
Q 045160 94 KESRQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQ 139 (166)
Q Consensus 94 ~~~~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~ 139 (166)
.|.=-+|..|+..|+ +--+.++...+..-+.++--.+-+||.++
T Consensus 21 lElDllL~~F~~~~~--~~ls~~el~~f~~LL~~~D~DL~~w~~g~ 64 (91)
T 1x6i_A 21 RELDISIMPFFEHEY--DSLSDDEKRIFIRLLECDDPDLFNWLMNH 64 (91)
T ss_dssp HHHHHHHHHHHHHHG--GGSCHHHHHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHH--hhCCHHHHHHHHHHHcCCCHHHHHHHHCC
Confidence 344457778888874 33689999999999999999999999975
No 203
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=22.01 E-value=45 Score=22.81 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCChhhhhhhhh
Q 045160 115 EADKLQLAESTGLDQKQINNWFI 137 (166)
Q Consensus 115 ~~ek~~LA~~tgLs~~qV~~WF~ 137 (166)
......+|+..|++.++|+.|=.
T Consensus 23 ~~gq~~vA~~iGV~~StISR~k~ 45 (97)
T 1xwr_A 23 MLGTEKTAEAVGVDKSQISRWKR 45 (97)
T ss_dssp HHCHHHHHHHHTCCTTTHHHHHH
T ss_pred HHhHHHHHHHhCCCHHHHHHHHh
Confidence 34556899999999999999844
No 204
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=21.55 E-value=44 Score=20.95 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCChhhhhhhhhh
Q 045160 117 DKLQLAESTGLDQKQINNWFIN 138 (166)
Q Consensus 117 ek~~LA~~tgLs~~qV~~WF~N 138 (166)
.-..+|+.+|++..-|+.|-..
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHh
Confidence 3568999999999999999843
No 205
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=21.52 E-value=1.1e+02 Score=19.10 Aligned_cols=49 Identities=10% Similarity=-0.022 Sum_probs=36.4
Q ss_pred CCCChHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 045160 90 GKLPKESRQTLLDWWNAH--YKWPYPTEADKLQLAESTGLDQKQINNWFIN 138 (166)
Q Consensus 90 ~~~~~~~~~~L~~~f~~h--~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N 138 (166)
..++.+....|...|... -.+.+.+..+-..+....|++..+|..+|..
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~ 69 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQR 69 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHH
Confidence 456677777787777643 2356888888888888888888888888764
No 206
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=21.30 E-value=52 Score=23.19 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHH
Q 045160 97 RQTLLDWWNAHYKWPYPTEADKLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 97 ~~~L~~~f~~h~~~pYPs~~ek~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...-...|.+ ..| . .....||+..|++..-|-..|.|+-
T Consensus 21 l~aA~~lf~~---~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~ 59 (194)
T 2q24_A 21 LAAAVRVFSE---EGL-D-AHLERIAREAGVGSGTLYRNFPTRE 59 (194)
T ss_dssp HHHHHHHHHH---HCT-T-CCHHHHHHHTTCCHHHHHHHCCSHH
T ss_pred HHHHHHHHHh---cCc-C-CCHHHHHHHhCCChHHHHHHcCCHH
Confidence 3344556677 688 5 7888999999999999999998864
No 207
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=21.30 E-value=54 Score=24.07 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCChhhhhhhhhhHHhh
Q 045160 116 ADKLQLAESTGLDQKQINNWFINQRKR 142 (166)
Q Consensus 116 ~ek~~LA~~tgLs~~qV~~WF~N~R~R 142 (166)
.+|..|....||+.+|..++|.-+|+.
T Consensus 11 ~~kqk~~~~yg~~e~q~~~~~~~a~~~ 37 (159)
T 1c05_A 11 QEKQKLRHMYGVNERQFRKTFEEAGKM 37 (159)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 578888999999999999999988765
No 208
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=20.70 E-value=44 Score=24.34 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 045160 118 KLQLAESTGLDQKQINNWFINQR 140 (166)
Q Consensus 118 k~~LA~~tgLs~~qV~~WF~N~R 140 (166)
...||+.+|++...|..|-.+++
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (192)
T 1y9q_A 27 LDATAQLTGVSKAMLGQIERGES 49 (192)
T ss_dssp HHHHHHHHSSCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999988754
Done!